BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine
photolyase [Candidatus Liberibacter asiaticus str. psy62]
         (483 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 483

 Score =  420 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF
Sbjct: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD
Sbjct: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP
Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ
Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS
Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF
Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP
Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ
Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480

Query: 481 SLL 483
           SLL
Sbjct: 481 SLL 483


>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
 gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
          Length = 476

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 305/473 (64%), Positives = 374/473 (79%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ  FI+A+LL
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+++GI   YHQC +F  +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R
Sbjct: 61  QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + IC+SFDDS+LLPPGS+   + +MYK+YTPFRKA IQ L ++D++SLP P  R  G
Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + IP  FDYP    +  FP GE+ AL  LR FC+E+V  Y+EQRD+PAI GTS LS
Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   LL    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WL EL +VP   IH PH W ++    L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
 gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
          Length = 476

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 299/473 (63%), Positives = 366/473 (77%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC +  A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL
Sbjct: 1   MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+ +GI    HQC +F  +++WL +YC Q+RV  LFYNRQYEINE++RD+  ++R
Sbjct: 61  QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +VIC+SFDDS+LLPPGS+     +MYK+YTPFRKA IQ L ++D+RSLP P  R  G
Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  S  P  FDYP       FP GE  AL  LR FC+E+V  Y++QRD PAI GTS LS
Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   +L    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LL AW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   +H PH W +K   +L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
          Length = 472

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 AIDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
 gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
 gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
          Length = 472

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
 gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
 gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
          Length = 472

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
          Length = 472

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-LCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
          Length = 472

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC      Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
          Length = 472

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 248/473 (52%), Positives = 330/473 (69%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026]
 gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
 gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           UMN026]
 gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
          Length = 472

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 MIEPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W ++   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
          Length = 472

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K++
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472


>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 331/475 (69%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E ++  C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL NVP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
          Length = 472

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG++     +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
          Length = 472

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 477

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 363/476 (76%), Positives = 414/476 (86%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL
Sbjct: 1   MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R
Sbjct: 61  QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK  IQNL Q+DLRS+P P IR TG
Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV  + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS
Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYLSIG LSPRQCWNRL  EF D+LIK  SGAFSWLNELIWREFY HL+ FYPS+C GKP
Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+KIEWN D   L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL
Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR
Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            WLPEL NVP QYIH PH+W+D  +    YP PIVDHK+A  HT+++Y  A+KQS+
Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476


>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
 gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180]
          Length = 472

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
 gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
          Length = 472

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
 gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
          Length = 472

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
 gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
          Length = 472

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
          Length = 472

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 247/475 (52%), Positives = 326/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SLDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +P
Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
 gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
          Length = 476

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 287/475 (60%), Positives = 356/475 (74%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN+ALYAAC +  A V+AVFIATP+QWRQH ++ARQ+ FI+A+L 
Sbjct: 1   MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L+Q+GI     QC +F  +++WL  +C    V  LFYNRQYE+NE RRD+ LE+R
Sbjct: 61  QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V C++FDDS+LLPPGS+L+   +MYK+YTPFR+A +  L ++D+ SLP PA R  G
Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P  FDYP   +D  FP GE+ AL  LR FC+++V  Y  QRDIPA+ GTS LS
Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G LSPRQC NRL+ E  D+L  P  GAF WLNELIWREFYRHL+   P++C  +P
Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ WN  +    AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP   +H PH W +K    L+YPLPIVDH +A   TL  + AAK+ +
Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKRGA 475


>gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
          Length = 472

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
 gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
          Length = 472

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 327/473 (69%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL  AC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+  V  Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G  SPRQC +RL  E    L         WLNELIWREFYRHL+ +YP++C  +P
Sbjct: 240 ASLATGGGSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLITYYPTLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470


>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
 gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
          Length = 472

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
 gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
 gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           55989]
 gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI1]
 gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357]
 gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
          Length = 472

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863]
 gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v]
          Length = 472

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 247/473 (52%), Positives = 327/473 (69%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R + 
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSSV 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  +                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 MIEAAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
 gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
          Length = 481

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 265/472 (56%), Positives = 336/472 (71%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI  +L 
Sbjct: 1   MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+ +GI   YHQC++F   +EWL ++C ++RV KLFYN QYE+NE  RD+ LE+R
Sbjct: 61  HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  + +C+ FDDSVLLPPGS+     QMYKVYTPFR A +  L + D   LP P+ R   
Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P         FDYP       +P GE  AL  LR FC +++  Y   RDIPA+  TS+LS
Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L++GVLSPRQC+ RL++ +   L   ++GAF+WLNELIWR+FYRHL+  +P++C  +P
Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FIPWT  + W +D  L  AW  G TG+PI+DAAMRQL   GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR
Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            WLP L +VP  Y+H P+ W D     L+YPLPIVDH KA    L+ Y AAK
Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAK 472


>gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
 gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
 gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FD SV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
 gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
 gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 472

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 247/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
 gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
          Length = 472

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
 gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
           str. REL606]
 gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BL21(DE3)]
 gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli BL21(DE3)]
 gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
          Length = 473

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 492

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 269/471 (57%), Positives = 345/471 (73%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  +L  V
Sbjct: 7   THVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLENLRLV 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK ++ RL 
Sbjct: 67  QQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R     
Sbjct: 127 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDARGEPIN 186

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
               +  F     +     FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GTS+LSPY
Sbjct: 187 NMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 246

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C  +PF 
Sbjct: 247 LALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 306

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+D
Sbjct: 307 AWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW
Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPEL  VP + IH PH W DK+   LNYPLPIVDHK A   TL  + AAK 
Sbjct: 427 LPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAKN 477


>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli W]
 gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11]
          Length = 472

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
 gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
          Length = 472

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+T F+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
 gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
 gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
          Length = 492

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 269/471 (57%), Positives = 343/471 (72%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++  Q+ F+  +L  V
Sbjct: 7   THVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLV 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK ++ RL 
Sbjct: 67  QQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQVKDRLT 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P +R     
Sbjct: 127 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVRGEPIN 186

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                  F     +  +  FP GE+ AL  LR+FC+E+V  Y +QRD PA  GTS+LSPY
Sbjct: 187 NTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGTSKLSPY 246

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C  +PF 
Sbjct: 247 LALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLCKHRPFT 306

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+D
Sbjct: 307 AWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW
Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPEL  VP + IH PH W DK    LNYP PIVDHK A   TL  + AAK 
Sbjct: 427 LPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAKN 477


>gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B]
 gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736]
 gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli]
 gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K12 substr. W3110]
 gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110]
 gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
 gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
 gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
 gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
 gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520]
 gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482]
 gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 326/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 NDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
 gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC      Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
 gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 472

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39]
 gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI39]
          Length = 472

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP +C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPLLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
 gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
          Length = 475

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 301/473 (63%), Positives = 365/473 (77%), Gaps = 1/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC+  DA+V+AVFIATP+QWR+H I+ RQ+  I+ASL 
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L QKGI    HQC +F  SI+WL  YC +Q+VT LFYNRQYE+NE RRD+ +E+R
Sbjct: 61  QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV C+ FDDS+LLPPGS+   + +MYKVYTPFR A I+ L ++D+R LP P  R  G
Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPRA-G 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   + P  F+Y        FP GEQ AL  LR FC+++V  Y+ QRD+PAI GTS LS
Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IG LSPRQC+NRL  E   +L + +SGAF WLNELIWREFYRHLMA YP++C  +P
Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+K+ W  D  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR
Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   IH PH W  K  L LNYPLP+VDH++A   TL  + AAK+
Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQ 472


>gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253]
          Length = 472

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 RRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+  +  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SLDPAPSITLNYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +P
Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472


>gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
 gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
          Length = 472

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/473 (51%), Positives = 326/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 INWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046]
 gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           sonnei Ss046]
 gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
          Length = 472

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGVGSV--WLNELIWREFYRHLITYHPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            I WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 IIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
 gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           ED1a]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK966]
 gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O157:H7 str. TW14359]
 gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           G5101]
 gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
           493-89]
 gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
           2687]
 gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1044]
 gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1125]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 246/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
 gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                F + E+ A+  LR+FC+     Y +QRD PA +GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
 gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           S88]
 gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
 gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
 gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
 gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
 gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
 gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933]
 gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli O157:H7 str. EDL933]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 246/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 497

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 272/472 (57%), Positives = 346/472 (73%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+  +L  
Sbjct: 11  ATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLLENLTS 70

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           VQ +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK ++ RL
Sbjct: 71  VQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRL 130

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++A+   +P P  R    
Sbjct: 131 ADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDARGEPI 190

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                +  F     +     FP GE+ AL  LR+FC+E+V  Y  QRD+PA+ GTS+LSP
Sbjct: 191 HNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPGTSKLSP 250

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C  +PF
Sbjct: 251 YLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPF 310

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
             WT+ ++W + S  L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+
Sbjct: 311 TAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFLVKDLLI 370

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRH
Sbjct: 371 DWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRH 430

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK 
Sbjct: 431 WLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAKN 482


>gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
 gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
          Length = 472

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
 gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
          Length = 472

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99]
 gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99]
          Length = 477

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 273/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  AKVIA+FIATPEQWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGI     QC +FD S+  L ++C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +  + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP P +R  
Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180

Query: 186 GPVTPSNIP-RFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G +     P   F+YP + IDP  FP GE+ A+  LR+FC++ V  Y ++RD+PA  GTS
Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDARV--FVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W +    L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL +VP +YIH PH W  KN  +L+YP P+VDHK+A   TL+ + AA+K+
Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475


>gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
 gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
          Length = 472

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 248/475 (52%), Positives = 329/475 (69%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT+LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 492

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 269/471 (57%), Positives = 344/471 (73%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  +L  V
Sbjct: 7   THVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK ++ RL 
Sbjct: 67  QHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+   + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R     
Sbjct: 127 DSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDARGEPID 186

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
               +  F     +     FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GTS+LSPY
Sbjct: 187 NTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 246

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C  +PF 
Sbjct: 247 LALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 306

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+D
Sbjct: 307 AWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW
Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK 
Sbjct: 427 LPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAKN 477


>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
 gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
          Length = 472

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
 gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
          Length = 472

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 318/475 (66%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L 
Sbjct: 1   MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI   + + ++FD S+E + + C    VT LFYN QYE+NE  RD  +EK 
Sbjct: 61  ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   IC+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +        P  R   
Sbjct: 121 LRKV-ICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V P           Q    +FP+ E+  +  LR+FC++    Y  QRD PA  GTS+LS
Sbjct: 180 AVAPQQKITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM   P++C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEHPQALDGGAGSV--WLNELIWREFYRHLMTRNPALCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  ++   QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FIR
Sbjct: 358 IDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL  VP + IH P  W +   ++L+YP P+VDHK+A   TL  Y AA+K +
Sbjct: 418 RWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472


>gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591]
 gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591]
          Length = 476

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 269/474 (56%), Positives = 343/474 (72%), Gaps = 1/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   YHQC +F  S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE  
Sbjct: 61  CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C  FDDS+LLPPGS++  +  MYKV+TPFR A I+ L Q D+ S+P P  R  G
Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T       FDYP   +   FP+GE  AL  LR+FC+E+  +Y E+RD+PA   TS+LS
Sbjct: 181 EFTLVP-LAPFDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+LSPRQC+NRL+ E  D L +P+SGAF+W NEL+WREFYRHL+ F PS+C  +P
Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSLCKHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT K+ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR
Sbjct: 360 IDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  +P + +H PH W  +    ++YP PIVDHK+A   TL  + AAKK 
Sbjct: 420 RWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKKS 473


>gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
 gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
          Length = 476

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 276/475 (58%), Positives = 347/475 (73%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN+AL+AAC +  A+VIAVF+ATPEQW+QH ++ RQ+ FIY  L 
Sbjct: 1   MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DS+ WL  +C  ++V  LFYN+QYE NE +RD  LE  
Sbjct: 61  ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   VIC +FDDS+LLPPGS++    +MYKVYTPFR+A +  L ++D RSLP P  R   
Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               ++    FDYP   I   F IGE+ A + LR FC+E+V  Y+EQRD+PA+ GTS LS
Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC NRL+ E  D+L K   GAF WLNEL+WREFYRHL+  +P +C  +P
Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F+ WT+ + W      LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD  G FI+
Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL +VP + IH PH W +K+   L+YPLP++DH +A   TL  + AAK +S
Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475


>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
 gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
          Length = 481

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 266/476 (55%), Positives = 345/476 (72%), Gaps = 1/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   Y QC +F  S+ WL  +C +++VT+LFYNRQYE NE +RD  L + 
Sbjct: 61  CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +C+ FDDS+LLPPGS++  + +MYKV+TPFR A I+ L   D+ SLP P  R  G
Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            VT +     FDYP   +   FP+GE  A+  LR+FC+E+V +Y   RD+PA   TS+LS
Sbjct: 181 DVTLAP-LAPFDYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+LSPRQC+NRL+ E  D L +P+ GAF+W NEL+WREFYRHL+ F PS+C  +P
Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           HW+PEL  +P + +H PH W       ++YP PIVDHK+A   TL  + AAK+++ 
Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEAA 475


>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 497

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 270/471 (57%), Positives = 341/471 (72%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            H+VWLRNDLRITDN ALYAAC +  A V+AVFIATP QW +H ++ RQ+ F+  +L  V
Sbjct: 12  THVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 71

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++KGI   YH+C++F  S++WL  +C +Q+ T LFYN QYEINE  RDK ++ RL 
Sbjct: 72  QHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQVKDRLA 131

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P  R     
Sbjct: 132 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDARGEPIN 191

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             + +  F     +     FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GTS+LSPY
Sbjct: 192 NTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 251

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C  +PF 
Sbjct: 252 LALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 311

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WT+ ++W +    L AW+QG TG+PI+DAAM QLN  GWMHNRLRMI ASFLVKDLL+D
Sbjct: 312 AWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVKDLLID 371

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIRHW
Sbjct: 372 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGRFIRHW 431

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPEL  VP + IH PH W DK  + LNYPLPIVDHK A   TL  + AAK 
Sbjct: 432 LPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAKN 482


>gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
 gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
          Length = 476

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 267/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L +K I   Y QC +F   + WL  +C  ++VT+LFYNRQYE NE +RD+ LE+ 
Sbjct: 61  CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C+ FDDS+LLPPGS++  +  MYKV+TPFR A ++ L Q D+ S+P PA R  G
Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +TP++    FDYP   +   FP GE  AL  LR+FC+E+V +Y EQRD+PA+  TS+LS
Sbjct: 181 DITPAS-LAPFDYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + +SGAF+W NEL+WREFYRHL+ F P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR
Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL  +P + +H PH W  +    ++YPLP+VDHK+A   TL  + AAK  +
Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAKNGA 474


>gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167]
          Length = 472

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 321/475 (67%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  + L+YP  IVDHK+A   TL  Y  A+K +
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472


>gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
          Length = 472

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 243/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +M+KV+TPF+ A ++ L +     + VP +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 500

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 250/479 (52%), Positives = 333/479 (69%), Gaps = 4/479 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            + M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A
Sbjct: 25  RSCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISA 84

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +
Sbjct: 85  QLNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAV 144

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           EK L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR
Sbjct: 145 EKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIR 203

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           ++G ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GT
Sbjct: 204 VSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGT 263

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C
Sbjct: 264 SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALC 321

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLV
Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G
Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500


>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
 gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
          Length = 472

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 244/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
 gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
          Length = 474

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 271/476 (56%), Positives = 341/476 (71%), Gaps = 3/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C+ F DSI+ L  +C + +V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P+  + IP F        + +FP GE  AL  LR F  + +  Y  +RD+PA+  TS+L
Sbjct: 181 APLKTTPIPAFDCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YLS GVLSPRQC +R+  E  D L   ++  F+WLNELIWREFYRHL+  YP++C  K
Sbjct: 241 SVYLSTGVLSPRQCLHRVLHEHPDALDNSRA--FTWLNELIWREFYRHLLVAYPALCRHK 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG FI
Sbjct: 359 LIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           RH+LPEL +VP  +IH PH W +KN+  L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 419 RHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
          Length = 472

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 243/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 VSLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W+ K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
 gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
          Length = 471

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 244/472 (51%), Positives = 325/472 (68%), Gaps = 3/472 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L  
Sbjct: 1   TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L
Sbjct: 61  LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G 
Sbjct: 121 RNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + PS                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS 
Sbjct: 180 IEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSA 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +PF
Sbjct: 240 SLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           I WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+
Sbjct: 298 IAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR 
Sbjct: 358 DWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQ 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 WLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469


>gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
 gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
          Length = 472

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 245/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 RWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 473

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 254/474 (53%), Positives = 334/474 (70%), Gaps = 4/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN +YE+NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ   IC+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +P P IR +G
Sbjct: 121 LQSV-ICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E  A+  LR+FC +    Y  +RD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLP L ++P + IH P  W +K  + L+YP PIVDHK+A   TL+ Y AA+K
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARK 471


>gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC
           35469]
 gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia
           fergusonii ATCC 35469]
          Length = 472

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  +                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIETAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
 gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
          Length = 472

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 247/474 (52%), Positives = 326/474 (68%), Gaps = 4/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A V+A++I+TPEQW+ H ++ RQ+  + A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E + + C+Q  V+++FYN QYEINE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +C+ FDDSV+LP G+++    +MYKV+TPF+ A ++ +       +  P +R +G
Sbjct: 121 LPQV-VCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D   FP  E+ A+  LR FC++    Y + RD PAI GTS+L
Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC NRL  E    L         WLNELIWREFYRHLM ++P++C  +
Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQALEDGAGSV--WLNELIWREFYRHLMTYHPALCRYQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FI
Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL +VP + IH P SW +K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 418 RQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471


>gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
          Length = 472

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 243/473 (51%), Positives = 322/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y  A+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470


>gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
 gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
          Length = 475

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 266/477 (55%), Positives = 343/477 (71%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL
Sbjct: 1   MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ SL++KGI     QC +F  S+E L  +C Q  V +LFYN QYE+NE +RD   E+R
Sbjct: 61  DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +I + FDDS+LLPPGS+L    +MYKV+TPF +A ++ L +     +P P  R  
Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P++ +   + FDYP +A D   F  GE+ ALH LR FC++ V  Y + R+IPA+ GTS+
Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +RL  E    L       F WLNELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGLDDS--NVFVWLNELIWREFYRHLLVAWPKLCRY 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT+ ++W      L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD
Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL +VP ++IH PH W D   ++L+YP P+VDHK+A   TL  + AA+KQS
Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475


>gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301]
 gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T]
 gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 301]
 gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 2457T]
 gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
 gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
 gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
 gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
 gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
 gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
          Length = 472

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 243/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703]
 gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703]
          Length = 477

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 274/473 (57%), Positives = 349/473 (73%), Gaps = 1/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+  ++  +L
Sbjct: 1   MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L +KGI   YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + 
Sbjct: 61  QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V  ++FDDS+LL PGS++  + +MYKV+TPFR A I  L+Q    S+P P  R   
Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQ- 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P+ P   P  FDYP   +   FP GE  AL  LR+FC+E+V+ Y E RD+P+   TS+LS
Sbjct: 180 PLPPLTPPAPFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + + GAF W NEL+WREFYRHL+ F+P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W      L AW++G TG+PI+DA MRQL+  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PEL  VP + IH PH W +K    L+YPLPIVDHK+A   TL  + AAKK
Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKK 472


>gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
 gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
          Length = 472

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
 gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
          Length = 471

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 247/473 (52%), Positives = 326/473 (68%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L 
Sbjct: 1   MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI     +  +F  S + +   C + +V+ L+YN QYE+NE RRD  +EK 
Sbjct: 61  DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   +C+ FDDSV+L PGS++    QMYKV+TPF+ A ++ L +     +  P++R  G
Sbjct: 121 LKDV-LCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +           +FP  E++A+  LR+FC+++   Y ++RD PA++GTS+LS
Sbjct: 180 AIKVCQPLKLNYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++GVLSPRQC  RL  E    L         WLNELIWREFYRHLM F+P +C  KP
Sbjct: 240 CCLTVGVLSPRQCLRRLLAECSGALEGGAGSV--WLNELIWREFYRHLMTFHPELCRFKP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+ ++W +D   L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 298 FIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR
Sbjct: 358 IDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H+P  W DK   +++YP PIVDH +A   TL  Y AA+K
Sbjct: 418 RWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470


>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
 gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
          Length = 482

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 270/477 (56%), Positives = 341/477 (71%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP+QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +  + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R +
Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180

Query: 186 GPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G + P   ++  F          +FP GE+ A+  LR+FC++ V  Y +QRD+PA  GTS
Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGLEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W  D   L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL  VPT+YIH PH W  KN  +L+YPLP+VDHK+A   TL+ + AA+K 
Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARKN 475


>gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
 gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
          Length = 480

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 276/475 (58%), Positives = 343/475 (72%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW +  ++ RQ+ F++ +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L+++ I   YHQC  F DSI WLD +C Q ++  LFYN+QYE NE +RD  L  +
Sbjct: 61  QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RVIC SF DS+LLPPGS+L    +MY+V+TPFR+A IQ L+ +D RS+P P  R T 
Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     FDYP Q++D   FP GE+ AL  LR FC+E+V  Y +QRD+PA+ GTS L
Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC NRL+ E  ++  K   GAF WLNELIWREFYRHL+  YP +C  +
Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDL
Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL+ VP   IH P  W  +    L+YP P+VDHK+A   TL  + AAK+ 
Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKRD 475


>gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
           pyrifoliae DSM 12163]
          Length = 504

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 265/475 (55%), Positives = 334/475 (70%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 28  MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 88  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  +     D  LL PPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207

Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V         F          +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 325

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 500


>gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
          Length = 472

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 476

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 269/476 (56%), Positives = 336/476 (70%), Gaps = 2/476 (0%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+  H+VW RNDLRITDN+AL+AAC +  AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L
Sbjct: 1   MTATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L+ K I   YHQC++F  S +WL  +C +  VT LFYNRQYE+NE RRD  + +
Sbjct: 61  QCLVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTE 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L       SFDD++LLPPGS++  + +MYKV+TPFR A +Q L  +D+RSLP P  R  
Sbjct: 121 LLAGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQ 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P  +         +FP GE+ AL  LR FC+E V  Y +QRDIPA+ GTS L
Sbjct: 181 ACEMSEIKPFDYSQ-QGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GVLSPRQC NRL  E  D L   +SGAF WLNEL+WREFYRHL+  +P +C  K
Sbjct: 240 SPYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + W+ D   L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 300 PFIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 360 LINWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP   IH PH W  K    L+YP P+VDH  A   TL  +  AK+++
Sbjct: 420 RRWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475


>gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 473

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 473

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
 gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
          Length = 472

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 473

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 473

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 473

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 473

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 473

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
 gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV HLVW RNDLR+TDNKAL  AC +  A VI V+IATPEQW  H +S RQ  F++ +L
Sbjct: 1   MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++Q +L+++GI    H  + F DS++WL  +  QQ  T L++N QYE+NE  RD+ L +
Sbjct: 61  VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + QH  I  ++DD++LLPPGS+      MY+VYTPFR+A +  L+ +D RS P P  R  
Sbjct: 121 QSQHLNI-LTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +  P F     +   P F  GE  AL  LR+FC E+V  Y   RDIPAI GTSQL
Sbjct: 180 ALAVENTHPLFVHQSVE-TSPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GVLSPRQC NRL  E   +    +SG FSWLNELIWREFY HL+  +P +C  +
Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ I+WN D  +  AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI
Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A   TL  + A K++S+
Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475


>gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 473

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
 gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
          Length = 472

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 251/475 (52%), Positives = 327/475 (68%), Gaps = 4/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+A++IATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  S++ +   CLQ  V++LFYN QYEINE +RD  +EK 
Sbjct: 61  TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ +       +  P  R +G
Sbjct: 121 LPQV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D   FP  E+ A+  LR+FC++    Y ++RD PAI GTS+L
Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC NRL  E    L         WLNELIWREFYRHLM ++P++C  +
Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPALCRHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WTE+++W  +   LQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 298 PFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FI
Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL NVP + IH P SW +    +LNYP PIVDHK+A   TL  Y AA+K+
Sbjct: 418 RQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472


>gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 473

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 473

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
 gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
          Length = 481

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 282/476 (59%), Positives = 345/476 (72%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN ALYAAC +  A+VIAVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F DSI WLD++C QQ+V  LFYN+QYE+NE RRD+    +
Sbjct: 61  LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + I C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D R +P P  R  
Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +    FDYP  + D   FP GE+ AL  LR FC+E+V  Y++QRD PAI GTS 
Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++SPRQC+NRL+ E  DLL +  SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP   IH P  W  +    LNYP P+VDHK A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKRD 476


>gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
 gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
          Length = 474

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 267/476 (56%), Positives = 340/476 (71%), Gaps = 3/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C  F DSI+ L  +C +Q+V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P+  + IP F        + +FP GE  AL  LR F  + V  Y  +RD+PA+  TS+L
Sbjct: 181 SPLKVTPIPAFDYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ GVLSPRQC +R+  E  D L   ++  F+WLNELIWREFYRHL+  YP++C  +
Sbjct: 241 SVYLATGVLSPRQCLHRVLHEHPDALDNSRA--FTWLNELIWREFYRHLLVAYPALCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           RH+LPEL +VP   IH PH W +K+   L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 419 RHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
 gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
          Length = 478

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 264/473 (55%), Positives = 336/473 (71%), Gaps = 2/473 (0%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW  HG+S RQ  F++ +L+++Q
Sbjct: 5   HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+++GI    H  S F DS +WL  Y  QQ+V  LF+N+QYE+NE +RD+ + +  Q 
Sbjct: 65  RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +    D  ++ P G +     +MY+VYTPFR+A +  L+  D RSLP P  R    + 
Sbjct: 125 LNVFSYDDAVLISP-GVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPRSEPIII 183

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            ++ P F   P + I P F  GEQ AL  LR FC+E+V  Y   RDIP+I GTSQLSPYL
Sbjct: 184 DNSQPLFPHTPVE-IAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +IG LSPRQC NRL  E   +   P SG FSWLNEL+WREFY HL+  +P +C  +PFI 
Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT+ I+WN D     AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+DW
Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI  WL
Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A  +TL  + A K+ S+
Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475


>gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 473

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
 gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
           F]
          Length = 487

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 337/476 (70%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475


>gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103]
 gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103]
          Length = 475

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 268/477 (56%), Positives = 333/477 (69%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++GI   +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP   ID   FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS+
Sbjct: 181 TPLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E    L    +    W+NELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALDSGPAAV--WINELIWREFYRHLIVAHPRLCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD
Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK  +
Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475


>gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 473

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
 gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
          Length = 481

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 282/476 (59%), Positives = 348/476 (73%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLRITDN AL+AAC +  AKV+AVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC++F DSI WL  +C QQ+V  LFYN+QYE+NE+RRD+    +
Sbjct: 61  LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D RS+P P  R  
Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                      FDYP Q++D   FP GE+ AL  LR FC+E+V  Y++QRD+PA+ GTS 
Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC+NRL+ E  DLL    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF+ WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP + IH P  W  +    LNYP P+VDHK A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKRD 476


>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
          Length = 477

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 268/479 (55%), Positives = 343/479 (71%), Gaps = 6/479 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVWLRNDLRI DN AL AAC  S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L 
Sbjct: 1   MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL+++GI   +HQC +F  S+++L ++C Q +V  LFYN QYEINE +RD  +EK+
Sbjct: 61  LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + V+C+ FDDS+LLPPGS+   +  M+KV+TPF KA I+ L Q        P  R  
Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV        FDYP +  D   FP GE+ AL  LR+F +++V  Y +QRDIPAI GTS+
Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLSPRQC +R+ +E    L      A  WLNEL+WREFYRHLM  +P++C  
Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQALNNG--SALVWLNELVWREFYRHLMVTFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++   L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD
Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA--STGNDSVPYFRIFNPTIQGKRFDPQG 422
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAA   TG D+ PYFRIFNPT QG+RFD QG
Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR WLPEL +VP   IH PH+W +KN+  L+YP PIV+HK A   TL+ +  A+  +
Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERARSAA 477


>gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 473

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473


>gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 473

 Score =  366 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10]
 gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
 gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
 gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
           pestis KIM 10]
 gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
 gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
 gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
 gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 487

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96]
 gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96]
          Length = 477

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 265/475 (55%), Positives = 334/475 (70%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  +     D  LL PPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V         F          +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473


>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 487

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
           Ejp617]
          Length = 477

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 265/475 (55%), Positives = 333/475 (70%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  +     D  LL PPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V                    +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473


>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           32953]
 gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
           pseudotuberculosis IP 32953]
          Length = 487

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           YPIII]
 gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
           YPIII]
          Length = 487

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
 gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
          Length = 470

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 257/473 (54%), Positives = 330/473 (69%), Gaps = 4/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC   DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L 
Sbjct: 1   MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+SL +KGI   Y + S+F   ++ + + C +  VT LFYN QYE NE +RD+ LE R
Sbjct: 61  ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A I+ L +A    +  PA R   
Sbjct: 121 L-DTVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAARG-E 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P+T      F        + +FP  E+ A+  LR FCK+    Y  QRD PA++GTS+LS
Sbjct: 179 PLTDLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSRLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++GVLSPRQC +RL  E    L         WLNEL WREFYRHLM ++P +C  +P
Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPQALDGA--AGAVWLNELTWREFYRHLMTYHPDLCKHRP 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WTE ++W ++   L+AW+ G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDLL
Sbjct: 297 FIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR
Sbjct: 357 IDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           HWLPELN VP + IH P +W DK  ++L+YP P+VDHK+A   TL  Y AA+ 
Sbjct: 417 HWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAARN 469


>gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
          Length = 475

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 268/477 (56%), Positives = 332/477 (69%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++G    +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP   ID   FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS+
Sbjct: 181 APLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E    L    +    W+NELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALESSPAAV--WINELIWREFYRHLIVAHPRLCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD
Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK  +
Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475


>gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 473

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 480

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 251/473 (53%), Positives = 317/473 (67%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LCDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +P            +F   E+ AL  LR FC++    Y  QRD PA++GTS+LS
Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+P
Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL 
Sbjct: 298 FTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR
Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
 gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
          Length = 481

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 283/476 (59%), Positives = 342/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A V+AVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DSI WL+ +C QQ V  LFYN+QYE+NE  RD+ L  +
Sbjct: 61  LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C  F DSVLLPPG++L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             VTPS     FDYP Q +D   FP GE+ AL  LR+FC+E    Y +QRD PAI GTS 
Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  DLL   + GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKRD 476


>gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 480

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 250/473 (52%), Positives = 317/473 (67%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q + + LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   IC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +P            +F   E+ AL  LR FC++    Y  QRD PA++GTS+LS
Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+P
Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL 
Sbjct: 298 FTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR
Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
          Length = 487

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 337/476 (70%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 484

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 277/474 (58%), Positives = 342/474 (72%), Gaps = 2/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ  L++  I   YH+C +F D+++WL  +C   +V KLFYN QYEINE RRD  LEK+
Sbjct: 61  AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L H+VIC+ F D+VLLPP  +L    QMY+V+TPFR+A ++ L   +L  +PVP  R   
Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V+ S     FDYP    D   FPIGE  A   L +FC  KV  Y   RD+ AI+GTS L
Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC   L+E F +  I+   GAF WLNELIWR+FYRHL+  YP +  G 
Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPE-GIEDHKGAFDWLNELIWRDFYRHLLIAYPRLSKGH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  ++W+    LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL
Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI
Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHWLPELN VP   IH P SW +KN   L+YP PIVDH++A   TL+ +  AK 
Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAKN 473


>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
 gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
          Length = 476

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 250/473 (52%), Positives = 310/473 (65%), Gaps = 1/473 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +LL 
Sbjct: 5   PVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLN 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + + L
Sbjct: 65  LSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR    
Sbjct: 125 AHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQK 184

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                    F  P      MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQLSP
Sbjct: 185 AVSPLSAPLFALPIS-STKMFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG++S RQC+NRL +   D L    S  F W NEL+WREFY+HL+   PS+     F
Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAF 303

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDLL+
Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH
Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           WLPEL +VP +YIH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 424 WLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
 gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
          Length = 479

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 184/476 (38%), Positives = 242/476 (50%), Gaps = 20/476 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN AL AA   S   VI VFI           S  ++ F+  SL  +  
Sbjct: 3   IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTALDG 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+     +     + +  L +   +     + +NR Y    V+RD  +++ L+  
Sbjct: 63  ELRSLGLHLVLRR----GEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRAA 118

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +S+ D+V+     ++  A Q Y VYTP+ K     L    +R   VP +       
Sbjct: 119 GYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAIPLPA 178

Query: 190 PSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +P             P F  GE  A   L  F    +  Y   RD+ AI GTS+LSP
Sbjct: 179 SDPLPALNDLLPTAPTSVPRFATGETAARAALEHFIHNAIANYATARDLVAIAGTSRLSP 238

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  GVLSPRQC    +            G  SW+ ELIWREFY  ++  +P    G  F
Sbjct: 239 YLRFGVLSPRQCVVAARAAPSG------PGPESWIGELIWREFYIQVLYHFPHALRG-SF 291

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  ++I W  D  L  AW+QG TG+PI+DAAMRQL   GWMHNR RMI ASFL KDLL+
Sbjct: 292 KPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTKDLLI 351

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ PYFRIFNP  QG++FDP G ++R 
Sbjct: 352 DWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYVRR 411

Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++PEL  VPT+YIH PH             +  +Y  P+VDH       L  Y +A
Sbjct: 412 YVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLRALELYRSA 467


>gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894]
          Length = 473

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+++GI     +  +F  +++ L ++C +Q+V+ LFYN QYE+NE RRD  +E+R
Sbjct: 61  ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS++    +MYKV+TP+ +A ++ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T       FDYP +  D + FP GE+ AL  LR+FC+     Y E+RD PAI+GTS L
Sbjct: 181 AITDVPGLAPFDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTSLL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+IGVLSPRQC +RL  E    L         WLNELIWREFYRHL+  +P +C  +
Sbjct: 241 SAYLAIGVLSPRQCLHRLLTEHPRALEGG--SGAVWLNELIWREFYRHLIVAWPHLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 419 RRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
 gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
 gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 485

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            PV  S +P  +         +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS L
Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C   
Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKDL
Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  VP   IH P  W ++  L  +YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQHL--DYPVPLVDHKQARLATLAAFEAAKRDS 473


>gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032]
 gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032]
          Length = 473

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 258/475 (54%), Positives = 333/475 (70%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ +GI     +  +F  +++ L ++C +Q+V  LFYN QYE+NE RRD  + +R
Sbjct: 61  ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS +    +MYKV+TP+ +A I+ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T +     FDYP +  D M FP GE+ AL  LR FC+     Y E+RD PAI+GTS L
Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLSPRQC +RL  E    L         WLNELIWREFYRHL+  +P +C  +
Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRALEGG--SGAVWLNELIWREFYRHLIVAWPHLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
 gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 250/473 (52%), Positives = 310/473 (65%), Gaps = 1/473 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +LL 
Sbjct: 5   PVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLN 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + + L
Sbjct: 65  LSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR    
Sbjct: 125 AHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQK 184

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                    F  P      MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQLSP
Sbjct: 185 TVSPLSAPLFALPIS-STKMFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG++S RQC+NRL +   D L    S AF W NEL+WREFY+HL+   PS+     F
Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQIAF 303

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDLL+
Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH
Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           WLPEL +VP + IH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 424 WLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
 gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
          Length = 480

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 251/473 (53%), Positives = 320/473 (67%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   IC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +P            +F   E+ AL  LR FC++    Y  QRD PA++GTS+LS
Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P L+ GVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+P
Sbjct: 240 PCLATGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL 
Sbjct: 298 FIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R
Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
 gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
          Length = 480

 Score =  359 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 251/473 (53%), Positives = 320/473 (67%), Gaps = 3/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   IC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +P            +F   E+ AL  LR FC++    Y  QRD PA++GTS+LS
Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P L+ GVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+P
Sbjct: 240 PCLATGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL 
Sbjct: 298 FIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R
Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
 gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
          Length = 479

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 276/473 (58%), Positives = 345/473 (72%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W R+DLR+TDN AL+AAC +  A+VIAVFIATP+QW  H +S +Q+ FI  +L 
Sbjct: 1   MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ + I   YHQC +FD S  WL ++  +++V KLFYN QYE+NE RRD  LE  
Sbjct: 61  CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ +V C+ + DS+LL PGS+L     MYK+YTPFR+A IQ L+ +D + +P P  R   
Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRARGEP 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T   +  F          +FP GE+ AL  LR+FC+E V  Y +QRD+PAI GTSQLS
Sbjct: 181 ITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IG LSPRQC+NRL+ E  D+L +P SGAFSWLNELIWREFYRHL+  YP +C  +P
Sbjct: 241 PYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ WN D+  LQAW+QG TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDLL
Sbjct: 301 FIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD  G FIR
Sbjct: 361 VDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           HWLPEL  VP   IH P  W  +    L+YPLP+VDHK+A   TL  + AA++
Sbjct: 421 HWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473


>gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 481

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 281/476 (59%), Positives = 337/476 (70%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WL  +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L HR I C  F DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D   FP GE+ AL  LR FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E   +L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRD 476


>gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638]
 gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638]
          Length = 470

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 250/473 (52%), Positives = 320/473 (67%), Gaps = 4/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+AVFIATP+QWRQH ++ RQ+ ++ A L 
Sbjct: 1   MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L+++GI   Y + S+F      +   C Q  VT LFYN QYE NE +RD+ LEK 
Sbjct: 61  GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +     +  PA+R   
Sbjct: 121 L-DGVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               + I   +         +FP  E+ A+  LR FC+     Y  +RD P+I GTS+LS
Sbjct: 180 LPPSAEIEFNYPQ-QDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++GVLSPRQC +RL  E    L   +     WLNELIWREFYRHLM ++P +C  +P
Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHRP 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+ ++W  D  LLQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 297 FIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDLL 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR
Sbjct: 357 IDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFIR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLP L  VP + +H P  W DK  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 417 KWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469


>gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
 gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
          Length = 475

 Score =  356 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 263/477 (55%), Positives = 333/477 (69%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +  A+V+A+FIATP QW+QH ++ +Q+ FIY SL 
Sbjct: 1   MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   Y QC +F  S+E L  +C QQ+V +LFYN QYEINE +RD   EKR
Sbjct: 61  LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + VIC+ FDDS+LL PGS+      M+KV+TPF KA ++ L Q        P  R  
Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP +  D  +FP GE+ AL  LR F ++ V  Y  +RD PA+ GTS+
Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +R+ ++  D L    +  F WLNELIWREFYRHLM  +P++C  
Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDALDGGLA--FVWLNELIWREFYRHLMVAFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W K+   L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD
Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F
Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP  +IH PH W  KN+++L YP PIV+HK A   TL+ +  A+  +
Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475


>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
 gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
          Length = 481

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 278/476 (58%), Positives = 336/476 (70%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A VIAVF+ATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ + I   YHQC +F  SI+WLD +C Q +V  LFYN+QYE+NE  RD  L  R
Sbjct: 61  QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C SF DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D  S+P P  R  
Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                      FDYP Q +D + FP GE+ AL  LR FC+E+V  Y +QRD PAI  TS 
Sbjct: 181 SMEIVPQPLTPFDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPAIAATSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 RPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP   IH P +W  +    L+YPLP+VDHK A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAKRD 476


>gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703]
          Length = 481

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 281/476 (59%), Positives = 340/476 (71%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WLD +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + HR I C  F D+VLLPPGSIL    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D   FP GE+ AL  LR+FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+ 
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRD 476


>gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 470

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 252/473 (53%), Positives = 324/473 (68%), Gaps = 4/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC +  A+V+A+FIATP QW+QH ++ RQ+ ++ + L 
Sbjct: 1   MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL++KGI   Y + S+F   +  +   C Q  VT LFYN QYE NE +RD+ LE+ 
Sbjct: 61  ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELERI 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C+ FDDSV+L PGS++    +MYKV+TPF+ A I+ L +A    +  P+ R   
Sbjct: 121 LGDV-ECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR-GE 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V       F          +FP  E+ A+  LR+FCK     Y  +RD PAI+GTS+LS
Sbjct: 179 CVNDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSRLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++GVLSPRQC +RL  E    L         WLNELIWREFYRHLM ++P +C  +P
Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPELCKHRP 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WTE ++W ++  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDLL
Sbjct: 297 FIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVKDLL 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  GTFIR
Sbjct: 357 IDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGTFIR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           HWLP L  VP + IH P +W DK  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 HWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARK 469


>gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
 gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
          Length = 485

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 279/480 (58%), Positives = 338/480 (70%), Gaps = 6/480 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W RNDLRITDN AL+AAC +  A VIA+FIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ +GI   YHQC +F DSI WLD +C QQ+V  LF+N+QYE+NE  RD  L  R
Sbjct: 61  QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120

Query: 127 LQHRV------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L HR        C  FDDSVLLPPGS+L    +MYKV+TPFR+A IQ L+ ++ R +P P
Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            IR +  V P  +  F        + +FP GE+ AL  LR FC+E+V  Y  QRD+PA+ 
Sbjct: 181 KIRDSVAVMPLPLLPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPAVA 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL++GVLSPRQC+NRL  E   LL     GAF+WLNELIWREFYRHL+  YP 
Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAYPR 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C  +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASF
Sbjct: 301 LCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD 
Sbjct: 361 LVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDS 420

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            G FIR WLPEL  VP   IH P  W  +    L+YPLP+VDHK A   TL  + AAK+ 
Sbjct: 421 NGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAKRD 480


>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
 gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
          Length = 483

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 267/482 (55%), Positives = 335/482 (69%), Gaps = 2/482 (0%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    A   HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ  F
Sbjct: 1   MAKKQA--CHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +L+ ++ SL++  I        +F  + +W+  +  QQ+V  L++N QYE+NE RRD
Sbjct: 59  LHQNLIALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRD 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + L    Q      +FDD++LLPP S+ N   +MY+VYTPFR+A I  LV  D RSLP P
Sbjct: 119 EWLIHHPQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAP 178

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             R             F +    I P FP GE  A   LR+FC+ KV +Y + RDIP+I+
Sbjct: 179 QPRGEALAIDDLSLPLFAHHAVDIVPHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIE 238

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL+IGVLSPRQC NRL  E+  L   P SGAF+WLNELIWREFY HL+  +P 
Sbjct: 239 GTSLLSPYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPR 298

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C  +PFI WT  I+WN      +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASF
Sbjct: 299 LCRHQPFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLL+DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDP
Sbjct: 359 LVKDLLIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           QG FIR WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A   TL  + A K  
Sbjct: 419 QGAFIRQWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSD 478

Query: 481 SL 482
           S+
Sbjct: 479 SV 480


>gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
 gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
          Length = 480

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 266/474 (56%), Positives = 335/474 (70%), Gaps = 2/474 (0%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ  FI+ +L+++
Sbjct: 7   CHLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVEL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q SL++ GI       ++F D+ +W+  Y   Q+   LF+NRQYE NE +RD+ L  +  
Sbjct: 67  QNSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-P 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           H +   +FDD +LLPPGS+     +MY+VYTPFR+A +  L   D RSL  P  R     
Sbjct: 126 HGLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAIN 185

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
               +P F   P +     FP GE++AL  LR+FC  KV  Y   RDIP+I GTSQLSPY
Sbjct: 186 IDKALPLFPHQPIEDFQ-QFPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPY 244

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++GVLSPRQC+NRL+ E   +L  P SGAF+WLNEL+WREFY HL+  +P +C  +PFI
Sbjct: 245 LAVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFI 304

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WT+ I WN  S    AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+D
Sbjct: 305 QWTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLID 364

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHW
Sbjct: 365 WRKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHW 424

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           LPEL  VP +YIH PH W   ++ +LNYP PIVDHK+A   TL  + A K+ SL
Sbjct: 425 LPELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478


>gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
 gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
          Length = 461

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 247/464 (53%), Positives = 312/464 (67%), Gaps = 3/464 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+   IC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +P            +F   E+ AL  LR FC++    Y  QRD PA++GTS+LS
Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+P
Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL 
Sbjct: 298 FTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR
Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
            WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   T
Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461


>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 473

 Score =  349 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 211/475 (44%), Positives = 283/475 (59%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A +  +
Sbjct: 1   MKLIWFRNDLRLADNPALRHAC-AGDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L   C +  VT+L+ N+  EI+E+RRD+ +   L 
Sbjct: 60  GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + + C   +   +LPPG +L  + +M+KV+TPF +A ++ L +        PA R    
Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179

Query: 188 VTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  R F          DP +P+GE  A   L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNELIWREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTLSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P T  + W+ D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL KD
Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL       +YP P+VDH  A    +  + A +K
Sbjct: 420 IRTWVSELADLPAAYLHQPHDWLRLKG-RHDYPAPMVDHAVARVRAIEMFRALEK 473


>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
 gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
          Length = 473

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 213/475 (44%), Positives = 289/475 (60%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHAC-AGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L + C +Q VT+L+ N+  EI+E+RRD  +   L 
Sbjct: 60  GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
            + + C  F+   +LPPG +L  + +M+KV+TPF +A +++L +        P  R   L
Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                              +DP +P+GE  AL  L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNELIWREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVAVLQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPALSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P T  + W+ D     AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL KD
Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL       +YP+P+VDH  A    +  + + +K
Sbjct: 420 IRTWVTELADIPPAYVHQPHDWLRLKG-RQDYPVPMVDHAVARVRAIEMFRSLEK 473


>gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
 gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
          Length = 498

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 235/472 (49%), Positives = 319/472 (67%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HLVW R DLR+TDNKAL AAC + DA V A+F A   QW +HG+S RQ  F++  L ++ 
Sbjct: 12  HLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFMHRHLEKLS 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + GI    H C NFDD+  ++  +C ++++  +F+N QYE+NE RRD+ LE  L  
Sbjct: 72  EGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDRWLEDNLPQ 131

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 +DD +LLPPG+  N   +MY+V+TPF++  ++ L  AD  SLP P  RL     
Sbjct: 132 ETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPERRLHVTRI 191

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +   FF Y   +    +  GE+ A+ +L  FC+EKV+ Y + RD P + GTS++S YL
Sbjct: 192 KGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDGTSRVSAYL 251

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +IGVLSPRQC N L  E  D + + K G   WLNEL+WREFY HL+A +P +C  +PF+ 
Sbjct: 252 AIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRLCRYEPFLE 311

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT++I WN +    +AW +G TG+PI+DAAMR+L   GWMHNRLRMI ASFLVKDLLVDW
Sbjct: 312 WTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFLVKDLLVDW 371

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP  QG++FDP G ++R WL
Sbjct: 372 RKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPAGHYVRRWL 431

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           PEL +VP   IH P  W  KN + L+YP P+VDH++A   TLN + A ++++
Sbjct: 432 PELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483


>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 482

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 191/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QW  H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C + +V  +  N++Y +NE RRD+ +++ L+
Sbjct: 59  EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  +     L   PGSIL      ++V+T F+K     L +A  R +  P  +    
Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           V    IP     F  P +A+  ++P GE  A   +  F  E++ YY   RD PA  GTSQ
Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  +P V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + +H P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQLHDPSSIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 473

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 207/475 (43%), Positives = 281/475 (59%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC  +  +V A+F+ +P QW+QH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K+L+  GI     +   F +    L S   +  V++L+ N+  EI+E RRD  +   L 
Sbjct: 60  GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + + C  F+   +LPPG +L  + +M+KV+TPF +A ++ L +        PA R    
Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179

Query: 188 VTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  R + Y        DP +P+GE  A   L  F +  V  Y E RD PA  GTS 
Sbjct: 180 PWQPLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPAVLDYEETRDFPAQAGTSI 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNEL+WREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTLSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF P T  + W+ D     AW +G TG+PI+DAAMR L+  GWMHNRLRMI ASFL KD
Sbjct: 300 LPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGDF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL        YP P+VDH  A    +  +   +K
Sbjct: 420 IRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALARVKAIEMFRNLEK 473


>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
           VT8]
          Length = 463

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 188/470 (40%), Positives = 255/470 (54%), Gaps = 9/470 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC + +  V A F+ TP+QW +H  SA +  F+      +
Sbjct: 2   TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ G+   +     F D  + L  +C    +  + +N +Y INE RRDK L  RL 
Sbjct: 61  ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I  S      + P   +                  ++ ++    +L      +   V
Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAAIGNAV 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P            A +P+ P GE  A   L  F  E+   Y + RD PA+ GTSQLSPY
Sbjct: 181 KPEQTDTLPAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLSPY 240

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVLS RQC    K+  +        G  +W+NE+ WR+FY H++  YP V MG+ F 
Sbjct: 241 LANGVLSGRQCLIAAKQSGLSGE-----GVETWINEIAWRDFYIHILYHYPRVSMGRAFK 295

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
             TE + WN      +AWK+G TG PI+DAAMRQL   GWMHNRLRMITA FL K+L +D
Sbjct: 296 EETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLFID 355

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE +FM  L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP+G FIR+W
Sbjct: 356 WRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIRNW 415

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL  +  + IH P        +   YP PIVD K++    + ++ A K
Sbjct: 416 VPELAKLDNKRIHDP---SRGGVIPKGYPRPIVDLKESRKEAIARFQALK 462


>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
 gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           K40]
 gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
          Length = 482

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
 gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
          Length = 487

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/484 (35%), Positives = 239/484 (49%), Gaps = 22/484 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN AL+ A   SD +VI +FI            A +  F+ A+L  +  
Sbjct: 4   IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  +G      +      +++ + +   +   T + +NR Y     RRD  +E  L+  
Sbjct: 64  NLRARGSRLVIRR----GRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDL 119

Query: 131 VICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  S  +  V+  P  +     + Y VYTP+R+       Q     L      L  P  
Sbjct: 120 NVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAP 179

Query: 190 ----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK----EKVYYYVEQRDIPAIQG 241
                  +P   D        + P GE +    L  F        +  Y E RD+ A   
Sbjct: 180 EAVADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPA 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFYP 299
           TS+LSPYL  G ++PRQ           +    +      +W+ EL WR+FY  ++  YP
Sbjct: 240 TSRLSPYLRFGCVAPRQALRAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHYP 299

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V   + F P  + + W  D  L  AWK+G TG+PIIDAAM QL    WMHNR RMI AS
Sbjct: 300 HVVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVAS 358

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  QG++FD
Sbjct: 359 FLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFD 418

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P+G ++R +LPEL  VP +YIHAP +            +  +YP PIVDH +     L  
Sbjct: 419 PKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRALAL 478

Query: 474 YYAA 477
           Y A 
Sbjct: 479 YRAV 482


>gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 482

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 482

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 482

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 481

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 194/472 (41%), Positives = 269/472 (56%), Gaps = 6/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L +  +     Q   +D + E L + C Q +V  L+ N +Y INE RRD  ++K L+
Sbjct: 59  EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A        A +    
Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEATHPVRMPAAQQALSI 178

Query: 188 VTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +     +   F  P Q +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQL
Sbjct: 179 TSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   +
Sbjct: 239 SAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHR 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+L
Sbjct: 299 AFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G FI
Sbjct: 359 LIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + WLPEL N+  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 KRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 469


>gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 467

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 191/471 (40%), Positives = 266/471 (56%), Gaps = 5/471 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H  S  +  F+ A    +
Sbjct: 2   TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI   + Q   FDDS+  L+S+C +  VT L +N +Y +NE +RDK L+ R  
Sbjct: 61  AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I         + P   +                  ++ ++     L          V
Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNAV 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +P  I    +    A +P+   GE  A   L +F +++   Y E+RD PAI GTSQ+SPY
Sbjct: 181 SPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISPY 240

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVLS RQC   +           + G  +W+ E+ WR+FY +++  +P V M + F 
Sbjct: 241 LANGVLSGRQCL--IAGRQAQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAFK 298

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P TE +EWN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA +L K+L +D
Sbjct: 299 PETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFID 358

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FIR W
Sbjct: 359 WRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIREW 418

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  + ++ IH P +      +   YP  IVD K++    + ++   K 
Sbjct: 419 VPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELKN 467


>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 482

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K++ +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470


>gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 482

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL  A   ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
 gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
          Length = 477

 Score =  339 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 239/472 (50%), Positives = 315/472 (66%), Gaps = 2/472 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+   ++ RQ+ FI+ +L 
Sbjct: 1   MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+ + I       +++    + +  +C Q + T LF+NRQYE+NE RRD+ L   
Sbjct: 61  CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   + C  FDD++LLPPG++L  A QM+KV+TPF+ A +Q L Q D   LP P  R   
Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAPTRRAYP 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P  +P F          +FP GE  A   L  FC+  +  Y  +RD PA  GTS LS
Sbjct: 179 CAPPPVLPTFDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GV+SPRQC   L+   +D       G  +WLNELIWREFYRHL+  +P +C  +P
Sbjct: 239 PYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHRP 298

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F+PWT +I W  D   L+ W+QG TGFP+IDAAMRQLN  GWMHNRLRM+TASFLVKDLL
Sbjct: 299 FLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDLL 358

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FIR
Sbjct: 359 IDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFIR 418

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            WLP L +VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 419 RWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470


>gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 489

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 214/474 (45%), Positives = 295/474 (62%), Gaps = 9/474 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A  +S   +IA+FIATP QW QH ++A Q  FI+  L  +++
Sbjct: 12  VIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++ I  Q  + ++F +S+  +D  C       +F N+QY INE +RD    + +  +
Sbjct: 71  QLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQRDNSAGELIAKK 130

Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            I  S  D   +  P ++L    +++KV+TPFR A I+    +    +      +T    
Sbjct: 131 GIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVTKDGYIVTSDAV 190

Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   + P            ++P+ E+     L  F + K   Y + RD PAI GTS L
Sbjct: 191 IKLLSVSNPIKAFNYPIIDSVLWPVDEETIAQRLETFFETKAETYHQNRDFPAIDGTSCL 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL+IG LS RQC  +L + F + L I    GAF+WLNE++WREFY HL+  YP +   
Sbjct: 251 SPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFYGHLLHRYPELSQY 310

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF  +T  ++W  D+ LL+AW++G TGFPI+DAAMRQL + GWMHNRLRMITASFL KD
Sbjct: 311 QPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHNRLRMITASFLTKD 370

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL DWR+GE++FM  L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G F
Sbjct: 371 LLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGDF 430

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+ EL +VP +YIH PH W     L  NYPLPIVDHK+A    +  +  AK
Sbjct: 431 IRTWVKELEHVPDKYIHTPHQWASAESL--NYPLPIVDHKEARLIAIESFKQAK 482


>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 482

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 482

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S     D + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFDAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470


>gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 489

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 296/474 (62%), Gaps = 9/474 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A   S   +IA+FIATP QW QH ++A Q  FI+  L  +++
Sbjct: 12  IIWFRSDLRVVDNTALNHAIE-SGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++ I  Q  + ++F +S+  ++  C+      +F N+QY INE +RD  + + L  +
Sbjct: 71  QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130

Query: 131 VICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
            I  S  D   +    + L    +++KV+TPFR A I+    +    + + +  +T    
Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190

Query: 187 -PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   +              ++P+ E+     L  FC+ K   Y + RD PAI GTS L
Sbjct: 191 SKLLSDSSQIKAFNYPIIDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTSCL 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL+IG LS RQC ++L++ F +   I    GAF+WLNE++WREFY HL+  YP +   
Sbjct: 251 SPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELSKH 310

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF  +T+ ++W  D  LL+AW++G TGFPI+DA MRQL   GWMHNRLRMITASFL KD
Sbjct: 311 QPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLTKD 370

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL DWR+GE++FM  L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G F
Sbjct: 371 LLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGDF 430

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+ EL +VP +YIH PH W  +  L  NYPLPIVDHK+A    +  +  AK
Sbjct: 431 IRTWVKELEHVPDKYIHTPHQWASEESL--NYPLPIVDHKEARLIAIESFKQAK 482


>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
          Length = 477

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 179/482 (37%), Positives = 246/482 (51%), Gaps = 17/482 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASL 65
           M+  +VW R DLRI D+ AL  A   +D ++I +FI   +   R+   S     F+  SL
Sbjct: 1   MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  S +  G      +       +E L S   + R   +++N  YE     RD+ ++ 
Sbjct: 60  EALALSYANIGGKLIVRR----GQVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQS 115

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +   +  K+F D V   P  +L    Q Y V+TP++K  +            +  I  
Sbjct: 116 EFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALSGNIPTPQPALTRIST 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +             ++ P+   GE   L  LR F  + +Y+Y E RD PA   TS 
Sbjct: 176 PELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDFPATNATSL 235

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L  G LS R  ++             + G  ++++ELIWREFY  ++  +P V   
Sbjct: 236 LSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEKH 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  E ++W  +    +AWK G TG+PI+DAAMR L   GWMHNRLRMI ASFL KD
Sbjct: 296 -SFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q ++FDP+G F
Sbjct: 355 LLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKGEF 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK---------NDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR ++PEL  VP +YIH P   L K           L  +YP PIV+HK      L  Y 
Sbjct: 415 IRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQREKALRLYK 474

Query: 476 AA 477
           A 
Sbjct: 475 AM 476


>gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 466

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 187/472 (39%), Positives = 266/472 (56%), Gaps = 8/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLRI DN AL AAC     +V A FI TP QW++H  S  +  F+      +
Sbjct: 2   TQLVWFRNDLRIADNAALTAACKQ-QQQVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI   +   + F DS+E L+ +C ++ +  + +N +Y +NE RRDK ++  L 
Sbjct: 61  SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +      + P G+IL    + Y V+TPF +     + +A     P+P   +   
Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKP-VGDT 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P +              +   GE  A   L +F  +    Y   RD+P++ GTS LSP
Sbjct: 180 VEPPHYEGLSKSFDNPPPRLVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLLSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS +QC   +       +   + G  +W NE+ WR+FY +++  YP + M + F
Sbjct: 240 YLANGVLSGKQCL--IAARQNQGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHRAF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P TE ++WN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA FL K+L +
Sbjct: 298 KPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNLFI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FIR 
Sbjct: 358 DWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFIRK 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PE+  +  + IH P        +   YP P+VD K++    + ++ A K 
Sbjct: 418 YVPEIAKLDNKRIHQPWV---GGVIPGGYPRPVVDLKESRKEAIAKFQALKN 466


>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 481

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 193/479 (40%), Positives = 265/479 (55%), Gaps = 8/479 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   L W RNDLR  DN ALYAA   +   ++++IA F+ +PEQWR H ++  +  F+  
Sbjct: 1   MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  +Q  L++  I         FD++   L +   Q + + L +N ++ +NE RRDK +
Sbjct: 61  NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L    +    F D  +LP GSI       Y V+TP+++A      +           
Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPEHIELWPEPAKQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                    ++P       +     +  GE  AL  L  F + KV  Y EQRD PAI G 
Sbjct: 181 PSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDGV 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL++GVLS RQC++   +           G  +W+NELIWR+FY H++  +P + 
Sbjct: 241 SQLSPYLALGVLSGRQCFH-AAQRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRIS 299

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           M K F   TE ++W        AW +G TG PI+DAAMRQLN  GWMHNRLRMI A FL 
Sbjct: 300 MTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFLS 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G
Sbjct: 360 KNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPNG 419

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIRH+ PEL  +  + IH P          L YP+PIVD K +    L  +   K  +
Sbjct: 420 DFIRHYAPELAELSAKLIHQP---PSDVRSRLGYPVPIVDLKASRERALQAFRELKNST 475


>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 476

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 205/479 (42%), Positives = 282/479 (58%), Gaps = 12/479 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLR+ DN AL  AC + +  V+ V+ ATP+ W +H +SA Q+  IY  L  +
Sbjct: 1   MNVVWFRRDLRVEDNTALIEACQSGE-PVVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L +  I   Y +  ++ D +E +         + LF+N+QYE +EV+RD  + + L+
Sbjct: 60  QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + C + +D   LPPGS+LN     +KV+TPF++A +Q +    L  +       T P
Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179

Query: 188 VTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +   R F        P      + +     +  LR+F ++KV  Y E RD P++  T
Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL++G+LS RQC   +        +    G   W +ELIWREFY+HL  F P + 
Sbjct: 240 SILSPYLAVGILSIRQC---MARVMYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F PW E + W      L+AWK G TG+PI+DAAM+QLN  GWMHNRLRMI ASFL+
Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR+GE+YFMS+L+DGD  +NNGGWQW +STG D  PYFRIFNP  QG+RFDP G
Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FI  WLP+L  VP +++H P  W   + L   YP PIVDHK     TL+ Y  AK+ S
Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRASQLK--YPAPIVDHKVQRGITLDLYKQAKEYS 473


>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 483

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 232/484 (47%), Gaps = 19/484 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+TDN AL  A    D +VI V+I  PE+            +++ SL 
Sbjct: 1   MKT-LLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L  +G+     Q      S+E L +   +    ++ +NR YE   + RD  ++++
Sbjct: 58  ALGEDLRARGVDLVIRQ----GASLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQ 113

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPA 181
           L+ + I     ++ L   P ++       YKV+TPF KA +   V          +  PA
Sbjct: 114 LRDQGIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPERIQGPA 173

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               G    S               ++  GE  AL  L +F  E V  Y E R+ P   G
Sbjct: 174 QLPPGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDG 233

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           +S+LSPYL  G + PRQ     +  +          G  S+L E+ WREF  HL+  +P 
Sbjct: 234 SSRLSPYLHFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPR 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    + +      D   L+AW++G TG P++DAAMR L   GWMHNR+RMI AS 
Sbjct: 294 TSDEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASL 353

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L   W  G  +F   L+D DLA N  GWQW A  G D+ PYFR+FNP +QG+RFDP
Sbjct: 354 LTKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDP 413

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R W+PEL  +P +YIH P    +         L  NYP PIVD  ++    L  +
Sbjct: 414 NGDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRRQALEMW 473

Query: 475 YAAK 478
              K
Sbjct: 474 EVIK 477


>gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 482

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPYPVRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDVVPDQVKGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 482

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 270/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P + +  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 452

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 231/453 (50%), Positives = 308/453 (67%), Gaps = 3/453 (0%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           AC NS A+V+A++IATP QW  H +S RQ+  I A L  +Q +L++KGI   + +  +F 
Sbjct: 2   ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            S+E +   C +  VT LFYN QYE+NE  RD  +E+ L++  +C+ FDDSV+LPPG+++
Sbjct: 62  ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV-VCEGFDDSVILPPGAVM 120

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
               +MYKV+TPF+ A ++ L +     +  P +R +G + P+                F
Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHF 180

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           P+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E  
Sbjct: 181 PVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQP 240

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             L         WL+ELIWREFYRHLM +YPS+C   PFI WT++++W  +   LQAW++
Sbjct: 241 QALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQE 298

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+N
Sbjct: 299 GKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAAN 358

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           NGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  
Sbjct: 359 NGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQ 418

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 419 KAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451


>gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 482

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 489

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 220/474 (46%), Positives = 287/474 (60%), Gaps = 9/474 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR  DN AL  A       VIA+F+ATP QW +H ++A Q  FI+  L  +++
Sbjct: 12  IIWFRDDLRTVDNTALNHAIETG-LPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I  Q  QC++F +S++ +  YC Q RV  +F N+QY +NE  RD+ L   L   
Sbjct: 71  QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130

Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I +S  D   +  P +ILN   +++KV+TP+R A I+         +           T
Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAEQSYPVTTNKEVALSDTT 190

Query: 190 P----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +              ++P+ E+  L  L  FC  K   Y +QRD PAI GTS L
Sbjct: 191 SAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTSCL 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SP+L+IG LS RQC  +L + F   L    + GAF+WLNE+IWREFY HL+  YP +   
Sbjct: 251 SPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELSKN 310

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF  +T+ + W  +  LL+AW+ G TGFPI+DAAMRQL   GWMHNRLRMITASFL KD
Sbjct: 311 HPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLTKD 370

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL DWR GE++FM  L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G F
Sbjct: 371 LLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKGDF 430

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+ EL  VP +YIH PH W     L  +YPLPIVDHK+A    +  +  AK
Sbjct: 431 IRTWVKELAKVPDKYIHTPHQWDSSGSL--DYPLPIVDHKEARLLAIEAFKQAK 482


>gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           642]
          Length = 482

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 191/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     + +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHNPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
 gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
          Length = 467

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 193/471 (40%), Positives = 278/471 (59%), Gaps = 4/471 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++  +  F++ +L 
Sbjct: 1   MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L +  I      C  F+D ++ + + C    VT L+ N +Y +NE +RD+ + + 
Sbjct: 61  ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V C    D  + P G +L      Y V++PF++A I+          P P  R   
Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P +         QA+D  +P GE  A++ L  FC++++ +Y  +RD+PA  GTS+LS
Sbjct: 180 AAVPGSEL--LASDKQAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ GV+SPR C +         + + + G  +W++ELIWR+FY H++  YP V M + 
Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    EKI W        AW +G TG+PI+DAAMRQL   GWMHNRLRM+ A FL K LL
Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE +FM  L+DGDL +NNGGWQWAASTG D+ PYFRIFNP  Q ++FD  G FIR
Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++PEL  +  + IH P + L +  L+  YP P+V+ K A    L  + + 
Sbjct: 418 RFVPELRELSDKDIHMP-APLMRQSLASAYPEPVVELKFARERALAAFKSV 467


>gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 482

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K + 
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P+    F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 482

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 269/473 (56%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ + K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A   ++  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P  A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 482

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
 gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
          Length = 488

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 221/474 (46%), Positives = 286/474 (60%), Gaps = 8/474 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLRITDN AL  AC +S   VIA++IATP+QW +H ++  Q   I   LL +Q
Sbjct: 7   QLIWFRSDLRITDNTALIHAC-HSGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLVLQ 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L    I     +  ++    E + +   Q  ++ +F N+Q E NE +RD  + + L  
Sbjct: 66  QQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQALVE 125

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184
           + +  S  D    + PG +       +KV+TPFR+  +      L +A      V    +
Sbjct: 126 KQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLHPI 185

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T  +   +         +     +P+ E +    L+ FC EKV+ Y E RDIPAI GTS 
Sbjct: 186 TSELLAQSATSVSFSYPEKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDGTSC 245

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC + L+ EF   L   + GAF WLNELIWREFYRHL   Y  +   
Sbjct: 246 LSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKLSRN 305

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF  WT KI W      L+ W+QG TGFPI+DAAM+QL   GWMHNRLRMI ASFL KD
Sbjct: 306 QPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFLTKD 365

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP G F
Sbjct: 366 LLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPNGDF 425

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+ EL +VP +YIH PH W   N L  NYP PIVDHK+A    +  +  AK
Sbjct: 426 IRKWIKELKDVPNKYIHTPHLWDGANTL--NYPKPIVDHKQARLLAIETFKQAK 477


>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 472

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 223/478 (46%), Gaps = 26/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL  A  + +  V+ V++   E        A    +++ SL  + +
Sbjct: 8   IVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      S   L   C +     +F+NR+YE   V RD  ++K L   
Sbjct: 67  SLKGLGSRLVLLR----GSSKSALVELCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLTG 186
            +     +  L+     + +               IQNL      A   +L  P     G
Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKHIQNLSTRTPLAKPDALTTPKSLPKG 182

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S             +  +  GE+ A   L  F K     Y + RD P+++G S+LS
Sbjct: 183 ESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSVRGVSRLS 242

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +SP Q W+ L  +              +L ++ WREF  HL+  +      +P
Sbjct: 243 PHLHFGEISPNQIWHALDRKK----------HEPYLRQIAWREFAHHLLFHFKDTP-SEP 291

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P      W ++   L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI +SFLVK LL
Sbjct: 292 LRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASSFLVKHLL 351

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+ G  +F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG+RFD  GT+ R
Sbjct: 352 QPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFDGDGTYTR 411

Query: 427 HWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  +P +Y+  P             DL  NYP+PIVDH KA    L+ Y   +
Sbjct: 412 RWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDAYAEMR 469


>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 494

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 218/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S +L+W R+DLRITDN AL   C+ S   VIA++IATP QW QH ++  Q   I   L  
Sbjct: 13  SHNLMWFRSDLRITDNTALSEVCNQS-LPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  I     +  +FD ++E ++  CL   +  +  N QY +NE  RD+ L   L
Sbjct: 72  LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIR 183
           +   I    +DD   L PGS+LN   + +KV+TP+ KA ++   Q        +      
Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVEPTAMVGNTHKE 191

Query: 184 LTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           L+  +         +  +     Q     +P+ ++  L  L  FC +KV  Y +QRD P+
Sbjct: 192 LSQEIEELLAVCGTVQHYDFQYPQVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRDYPS 251

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           ++GTS LSPYL+IG LS RQC   +++     L I  + G F W+NELIWREFY HLMA 
Sbjct: 252 LEGTSTLSPYLAIGALSVRQCLKAVQQVDPSCLEINKECGGFVWVNELIWREFYHHLMAE 311

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y  +C G+PF  +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL   GWMHNRLRMIT
Sbjct: 312 YKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNRLRMIT 371

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+ W  GE +F+  L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT QG+R
Sbjct: 372 ASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGER 431

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+G FIR W+PEL +VP +YIH PH W   +     YP PI+DHK+A    +  +  A
Sbjct: 432 FDPEGEFIRKWIPELVDVPNKYIHTPHLW---HGDKKGYPAPIIDHKQARLRAIEVFKNA 488

Query: 478 KK 479
           K+
Sbjct: 489 KE 490


>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
 gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
          Length = 491

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 165/490 (33%), Positives = 230/490 (46%), Gaps = 28/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN AL  A   S  +VI +FI              +  F+ A+L  +  
Sbjct: 4   IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +G      +        + L           + +NR Y     +RD+ +E  L+  
Sbjct: 64  SLRARGSRLVVRR----GRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119

Query: 131 VICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +        V++ P  +     + Y VYTP+R+     + Q     L      +  PV 
Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179

Query: 190 --------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   P N         +        G       L       +  Y + R++ A   
Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           TS+LSPYL  G ++PR              +E+  +          +W+ EL WR+FY  
Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V     F P  + +EW  D  L  AWK+G TG+P++DAAMRQLN   WMHNR 
Sbjct: 300 ILWHHPHVLRS-AFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  
Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           QG+ FDP+G ++R +LPEL  VP +YIHAP +            +  +YP P+VDH +  
Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478

Query: 468 HHTLNQYYAA 477
              L  Y A 
Sbjct: 479 ARALALYRAV 488


>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 477

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 236/482 (48%), Gaps = 18/482 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+TD   L AA       V+ VFI  P    +  +      +++ SL  +
Sbjct: 4   TTIFWFRQDLRLTDLPGLCAAAER--GAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q S+  +G      +        + L +   +   + ++ +RQY+      +  L + L 
Sbjct: 62  QASIEARGGELILRR----GAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETLT 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184
              I  K +  ++L  PGS+L      YKV+TPF +A +Q+    + RS+P     +   
Sbjct: 118 DEGIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVR 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  V   N+           + ++  GE+ A   L  F    V +Y + RDIPA   TS+
Sbjct: 178 SESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SPRQ W+   +     L +       +L+E+ WRE + + +         
Sbjct: 238 LSPHLKFGEISPRQIWH-AAQYAKQRLPEAAESIDKFLSEIGWRE-FCYTLLDQFPEMPN 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPF    +   W      L+AW++G TG+PI+DA MR+L   G+MHNR+RMIT SFL K 
Sbjct: 296 KPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL  WR GE +F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++FD  G +
Sbjct: 356 LLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEY 415

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PE+ N+P +YIH P              L   YP PIVDHK A    L  Y   K
Sbjct: 416 VRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYEEVK 475

Query: 479 KQ 480
             
Sbjct: 476 NS 477


>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
 gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
          Length = 484

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 158/484 (32%), Positives = 240/484 (49%), Gaps = 23/484 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RNDLR+ DN AL AA   S  +V+ V+I  P       I   +  +++ SL ++ 
Sbjct: 12  AIVWFRNDLRVNDNAALLAAS--SHKQVVPVYILEPA-ANTRAIGGARKWWLHHSLAKLG 68

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  G      +     D    +     +     +++NR+Y+   +  D  L+  L+ 
Sbjct: 69  EKLADLGAPLMLMR----GDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRA 124

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIR 183
           + I        L   P  +       YKVY+PF +A+      +    A  R   +    
Sbjct: 125 QDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPDRLTALANAP 184

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +  ++   +        + +   +  GE  A   L +F  E+V  Y   RD+P ++ TS
Sbjct: 185 QSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVESTS 244

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L+ G ++P Q    LK    D           +  E+ WREF  HL+   P +  
Sbjct: 245 RLSPHLANGEITPAQIIQALKASDADAS---PKDRTVFRKEVGWREFSYHLLVNEPDLPQ 301

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                   +   W  D   L AW++G TG+PI+DA MR+L   GWMHNR+RM+TASFL K
Sbjct: 302 QNH-NSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFLTK 360

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+VDWR GE +F   L+D D ASN   WQW A +G D+ PYFR+FNP IQG++FDP G 
Sbjct: 361 HLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPDGD 420

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++R ++PEL N+P+++IH P +  D         L   YP+PIVDH++A +  L  Y   
Sbjct: 421 YVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAAYEKI 480

Query: 478 KKQS 481
           K  +
Sbjct: 481 KDAA 484


>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
 gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
          Length = 478

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 190/472 (40%), Positives = 266/472 (56%), Gaps = 7/472 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLR+ DN AL  A +      IA+++ TP+QW++H  +  +  F   +L ++ 
Sbjct: 3   QLMWFRSDLRVQDNTALSQAMNRGAT--IALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K+L++  +     QC ++ D    +   C +  +  +  N +Y INE  RD+ +   L  
Sbjct: 61  KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I        +   PGS+L  +   ++VY+ FRK   + L  A    +  P  +    V
Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180

Query: 189 TPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               IP     F  P +++  ++P GEQ AL  L +F  E+V +Y ++RD PA  GTSQL
Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ G+LSPRQC +               G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W      L AW++G TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FDP G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL  +  + IH P S L        YP PIVD  ++    L  +   
Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAFKNL 471


>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
 gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
          Length = 469

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 283/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL AA  + D  V+AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MRLVWLRRDLRCVDNSALSAAIASGD-PVVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L++  +   Y Q ++F D+ E +       +  ++F NR YE++E +RD   E+RL 
Sbjct: 60  QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
            + I     D   + PPGS+     + +KV+TPF++A +  L Q        PA++    
Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLS-LFQPPTIVKNSPALKGIIP 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +                +     +P+  +   + LR FC+E+V  Y + RD PA  GTS 
Sbjct: 179 SELTDWIWNSEQAFDYERVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMGVLGEGAQVWLSELIWREFYQHLVAREPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F  W   +EW  D    Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL  + + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRGLSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
 gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
          Length = 499

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 167/494 (33%), Positives = 249/494 (50%), Gaps = 28/494 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              L+W R DLR+ DN ALY A      +V+ VF+           + R+  FI  SLL+
Sbjct: 13  PKGLMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLE 71

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q  L                 +++ + +      V  +F NR  E + + RD  +   L
Sbjct: 72  LQAELGALSGGLIVRHSH----AVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGAL 127

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAI 182
            +  I   ++ DS +     +L    Q Y V+TP+++A +       ++         A+
Sbjct: 128 ANAGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADAL 187

Query: 183 RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                     +P   +  F+  +   +          +L +   E++  Y E R+ PA++
Sbjct: 188 VPPPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFFERIDRYDEARNFPAVR 247

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S +  +L  G +S RQ  +   +  +        GA +WL+ELIWR+FY  ++  +P 
Sbjct: 248 GPSYMGVHLRFGTVSIRQVASVAHQLSLQGNA----GAATWLSELIWRDFYFQILTHFPH 303

Query: 301 VCMG---KPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           V      K F P  +KI+W+   H  Q   AW +G TG+P++DAAM Q+N  G+MHNRLR
Sbjct: 304 VHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLR 363

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR GE YF   L D +LASNNGGWQWA+S+G D+ PYFRIFNP  Q
Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQ 423

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            +RFDP+G FIR +LP+L  +    IHAP +            L   YPLP+VDH +A  
Sbjct: 424 SERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEARE 483

Query: 469 HTLNQYYAAKKQSL 482
            TL +Y  A+ ++L
Sbjct: 484 KTLQRYGVARAKAL 497


>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
 gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
          Length = 469

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 249/479 (51%), Gaps = 20/479 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L W R DLR+ D+ ALYAA  +S+ +V+ VF+   +  +      R+  FI+ SL++
Sbjct: 3   TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L   G              ++ + +   +   + ++ +R YE     RD  + +RL
Sbjct: 62  LKEQLCALGSDLVV----VSGRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAVAERL 117

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIR 183
            +H    ++  D V+     +L    + Y V+TP+R A ++ L         S       
Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYLNRL 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                TP        +    +  +           +     +++ +Y + RD PA +G S
Sbjct: 178 ARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDFGQRIEHYQQWRDFPAAKGVS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G +S RQ      ++          GA +WL+ELIWREFY+ L+  YP V +
Sbjct: 238 YLSVHLRFGTISIRQLAQFAWQQGSA-------GATTWLSELIWREFYQQLLWHYPHV-V 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   ++ +  D  L  AW  G TG+P++DAAMRQL   G+MHNRLRM+TASFLVK
Sbjct: 290 EESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRMVTASFLVK 349

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLLVDWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FDP+G 
Sbjct: 350 DLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEGK 409

Query: 424 FIRHWLPELNNVPTQYIHAPHSW---LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR ++PEL  +  + IHAP           L  +YP PIVDH +     L  +   +K
Sbjct: 410 FIRRYVPELAALDNKAIHAPWQAKVLPGGFLLGRDYPRPIVDHAEQRTQALALFGQRQK 468


>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
 gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
          Length = 471

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 238/478 (49%), Gaps = 25/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLR DLR+ D+ A Y A  +S+A V+ VF+             R+  FI+ S   +
Sbjct: 7   TALVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAAL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+Q G                 +     +     +F NR YE     RD  + +RL 
Sbjct: 66  KAELNQLGGDLLIRHGL----PQHEIPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLA 121

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIR 183
            + +  +   D V+     +L  A + + V+TP++ A ++ L      A      + A+ 
Sbjct: 122 EQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALM 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P +  ++      P          G   A   L      ++  Y  QRD P ++G S
Sbjct: 182 PREPQSMPSLADIGFLPSDLASLPVKAGAAGAEA-LFADFAGRIERYKAQRDFPGVKGVS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G LS R+       +  +       GA +WL+ELIWR+FY+ ++   P    
Sbjct: 241 YLSVHLRFGTLSIRRLAAYAWHDGGE-------GAMTWLSELIWRDFYQQVLWHRPDAAK 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  + + +  D     AW++G TG+P++DAAMRQLN  G+MHNRLRM+ ASFLVK
Sbjct: 294 H-AFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASFLVK 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE+YF  +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP G 
Sbjct: 353 DLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPDGR 412

Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           FIR ++PEL  +P + IHAP              L  +YP PIVDH       L  + 
Sbjct: 413 FIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRELALALFK 470


>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
 gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
          Length = 489

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/482 (33%), Positives = 235/482 (48%), Gaps = 19/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ DN AL  A   S   V+ VF+   +             +++ SL  + +
Sbjct: 7   LVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSLASLSR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL+  G      +      +   +     +     + +NR YE     RD  L+  L+  
Sbjct: 66  SLATAGSPLVLRR----GRADVAIGELVRETGAGTVLWNRCYEPWATERDSRLKADLRAA 121

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRL 184
            +  KSF+ S+L  P ++   A + Y+V+TPF +A+         + A  R    P    
Sbjct: 122 GVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTAPA 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           + P+    +          +   +  GE      LR F +     Y E RD P   GTS+
Sbjct: 182 SDPLESWGLLPTTPDWAGGLRQAWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDGTSR 241

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCM 303
           LSPYL  G +SPRQ W   ++  +            S+L EL WREF  +L+  +P    
Sbjct: 242 LSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAESFLRELGWREFCYNLLYHFP-KLP 300

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P  P  E   W  DS  L +W++G TG+PI+DA MRQL T GWMHNR+RMI  SFLVK
Sbjct: 301 ERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVK 360

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+ W+ G+ +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +QG +FDP G 
Sbjct: 361 HLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFDPDGR 420

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++R W+PEL  +P   IH P +   +        L  +YP P ++HK+     L  +   
Sbjct: 421 YVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDRALAAFATL 480

Query: 478 KK 479
           ++
Sbjct: 481 RQ 482


>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
 gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
          Length = 466

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 169/476 (35%), Positives = 235/476 (49%), Gaps = 25/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W+R DLR+ D+ AL  A      +VI VFI      ++   ++++  F+++ L 
Sbjct: 1   MTTILWWIRRDLRLHDHPALEYALQ--KGRVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+ + L ++G      +     + +  L     +    ++     Y     RRD  + + 
Sbjct: 57  QLDEDLRKRGSQLIIRR----GEPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L        F    + PP  +L      Y V+TPF +A       +              
Sbjct: 113 LP----LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAWKALPFASPSVVSLPERFPAVP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +       P       FP GE  AL  L  F       Y + R+     GTS LS
Sbjct: 169 -----DKLVSLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLS 223

Query: 247 PYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PY   G+LSPR   +   K   +      K G  +WLNELIWREFY  ++  YP V    
Sbjct: 224 PYFRFGMLSPRWAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHVLAM- 282

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P    IEW      LQAWK+G TG+P++DAAMRQL   GWMHNR RMI ASFL KDL
Sbjct: 283 AFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDL 342

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++W+ GE++FM  L+DGD A+NNGGWQW A  G D+ PYFRIFNP +Q  +FDPQG +I
Sbjct: 343 LINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYI 402

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           + W+PEL +VPT++IHAP +            +  +YP P+VDH++     L  Y 
Sbjct: 403 KTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEAYR 458


>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 183/480 (38%), Positives = 247/480 (51%), Gaps = 20/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN AL AA   +   V+ VFI      R    S  ++ F+   L  +  
Sbjct: 3   IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAALDA 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+     +     D +  L     +   + + +NR Y    VRRD  +++ L+  
Sbjct: 63  ELRTFGLHLVVRR----GDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALREA 118

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                SF D+V+     +     + Y VYTP+ K     L    +    +P +       
Sbjct: 119 GYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPLPV 178

Query: 190 PSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +P          A  P FP GE  AL  L +F +  +  Y + RD+ A+ GTS+LSP
Sbjct: 179 SEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTSRLSP 238

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL +GVLSPRQC             +   G      ELIWR+FY  ++  +P    G  F
Sbjct: 239 YLRLGVLSPRQCVAAALAAPPGPGPESWIG------ELIWRDFYVQVLYHFPHALRG-SF 291

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P   +I+W  D  L  AW+QG TG+PI+DAAMRQL   GWMHNR RMI ASFL KDLL+
Sbjct: 292 KPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTKDLLI 351

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ P+FRIFNP  QG++FDP+G ++R 
Sbjct: 352 DWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFDPEGAYVRR 411

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           ++PEL NVPT+YIH PH             +  +YP PIVDH       L  Y AA + +
Sbjct: 412 YVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDHATQRTKALELYRAATRHN 471


>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
 gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
          Length = 488

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 192/477 (40%), Positives = 270/477 (56%), Gaps = 7/477 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P+QW++H  +  +  F   +L ++
Sbjct: 8   MQLIWLRSDLRQHDNTALAAAAER--GPSVAVYLLSPQQWQEHDDAPCKIDFWLRNLHKL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            KSL    I        ++D +   L   C Q ++  +  N +Y INE RRD  + K LQ
Sbjct: 66  SKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVAKALQ 125

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   S+ D +L  PGS+L      ++V++ FRK   ++L ++       P  +    
Sbjct: 126 AEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGKQSALN 185

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P  ++  ++P GE  A   L  F   ++ YY  +RD PA  GTSQ
Sbjct: 186 IASDPVPEAIEGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAKPGTSQ 245

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +         K GA +W+NEL+WREFY+H++  YP V   
Sbjct: 246 LSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYPRVSRH 305

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 306 RAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 365

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP  Q ++FD +G F
Sbjct: 366 LLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFDSEGLF 425

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           I+HWLPEL  +  + IH P S      ++ +YP PIV+   +    L  +     +S
Sbjct: 426 IKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAFKNLPSRS 481


>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 481

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 195/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474


>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
 gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
          Length = 469

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 207/473 (43%), Positives = 282/473 (59%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V+AV+IATP QW+QH ++  Q+ FI+  L ++
Sbjct: 1   MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  + E +     +   T++F NR YE++E +RD+  E  L 
Sbjct: 60  QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185
            R I  +  D   L PPG +     + +KV+TPF++A +       +       P    +
Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWLSLFQPPIITKNQPAEPWTLSS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +            +     +P+  +   + LR FC+++V  Y +QRD PA +GTS L
Sbjct: 180 EWASWVWNSAQTFDYPRVDSQSWPVDFETIRNQLRDFCRDQVQNYHQQRDFPAREGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E     +    GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRESSMGALSE--GAQVWLSELIWREFYQHLVAIEPNISKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F  W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDPQG FI
Sbjct: 358 HIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPQGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           RHW+PEL ++   YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RHWVPELRSMSAAYIHQPWTYPAVNSVP--YPARLVDHKQEREVTLRLYKTAK 468


>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
 gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
          Length = 481

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCLALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474


>gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
 gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
          Length = 475

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 209/477 (43%), Positives = 280/477 (58%), Gaps = 8/477 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A  + ++ V A+F+ATP QW++H ++  Q+ FIY  L  +
Sbjct: 1   MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q  ++  + + +  +     V ++  NR YE NE +RD   E+ L 
Sbjct: 60  QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I     D   L  PG +LN   + +KV+TPF++A +       + S P  A+     
Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAVNPLLD 179

Query: 188 VTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +     R      +     +P+  +   H LR+FC++ +  Y +QRD PA +GTS+L
Sbjct: 180 SEHNALWNERQDFAYPRVSSDQWPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG+LS RQC  R+  +    L+    GA  WL+ELIWREFY+HL+ F   +  GK
Sbjct: 240 SPYLAIGMLSVRQCIARMYAQSQSGLLSS--GAEIWLSELIWREFYQHLLVFESKLSKGK 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F  W ++++W+ D      W +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL KDL
Sbjct: 298 AFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DW  GE YFM QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP G FI
Sbjct: 358 HIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPSGQFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R W+PEL +VPT YIH P  W     L   YP P+VDHK A   TL  Y  AK   +
Sbjct: 418 RQWVPELASVPTAYIHTPWKWPGVKSLL--YPSPMVDHKVAREVTLRLYKEAKDNPI 472


>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
 gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
          Length = 480

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 234/490 (47%), Gaps = 25/490 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T+ +   ++W R DLR+ DN AL AA   S   V+AVF+          +      +
Sbjct: 1   MSKTSPI---IMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMRWW 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + K L   G+     +        E +     +     + +NR+Y   E   D
Sbjct: 57  LHHSLKSLTKDLGALGVDLILRRGPG----AEVIFDLAKEVGAENVVWNRRYGDAEQTVD 112

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             ++   +     KS+   ++  P ++       YKVYTPF K   +  +  D    P  
Sbjct: 113 ATIKGDFE--GEAKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQE 170

Query: 181 AIRLTGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                G V   N+  +               ++  GE  A    R F  + +  Y   RD
Sbjct: 171 IAGFGGDVASDNLDEWDLLPTKPDWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDSARD 230

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +P    TS+LSP+L  G +SP + W   ++     L        +W+ EL+WREF  HL+
Sbjct: 231 LPGDDRTSRLSPHLRWGEISPYRLWQMAQD---GRLSAGSKARETWVKELVWREFSYHLL 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +   + F    +   W  D   L+AW++G TG+PI+DA MRQL   GWMHNR+RM
Sbjct: 288 QEWPDLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I  SFLVK LL+DWR GE++F   L+DGD ASN+  WQW A TG D+ P+FRIFNP +Q 
Sbjct: 347 IVGSFLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQA 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           ++FD  G +I+ W+PEL  +P +Y+ +P              L   YP PIVDHK+A   
Sbjct: 407 EKFDKDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARER 466

Query: 470 TLNQYYAAKK 479
            L      ++
Sbjct: 467 ALAALQEMRE 476


>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
          Length = 481

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 195/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474


>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
 gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
          Length = 469

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 171/472 (36%), Positives = 238/472 (50%), Gaps = 19/472 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L WLR DLR+ D+ AL +A   S  +V+ VF+           S R+  FI+ SL ++Q
Sbjct: 6   SLCWLRRDLRLDDHAALSSALQQS-REVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQ 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
             L Q G          +  + E L +   +     +F  +  E   V RD  +  +L Q
Sbjct: 65  ARLQQHGSTLVCR----YGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I     D  L     +L      + V+TP+ +A +  L  AD+   PV         
Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK---FCKEKVYYYVEQRDIPAIQGTSQL 245
            P+               +  +G Q      +        ++  Y E+RD PA+  TS+L
Sbjct: 181 LPAQPLPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLPRLPLYHEERDFPALDATSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LS RQ      +   +       GA +WLNEL+WR+FY  ++   P +  G 
Sbjct: 241 SPHLRFGTLSVRQLVRLATDAGHE-------GAQAWLNELVWRDFYHQVLWHRPQLAQGH 293

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++++W  ++    AW +G TG+P++DAAMRQL   GWMHNRLRMI ASFL KDL
Sbjct: 294 AFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKDL 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE +F   LLD D A+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP G FI
Sbjct: 354 LLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHFI 413

Query: 426 RHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           RH++PEL  +  + IHAP              +YPLP+VDH +     L  Y
Sbjct: 414 RHFVPELARLDAEAIHAPWLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465


>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
 gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
 gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
          Length = 481

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474


>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 216/474 (45%), Positives = 287/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN A  AA  NS+  V+A FIATP+ W QH ++  Q+  I   L ++
Sbjct: 1   MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+  G+   Y + S++  S++ + ++  Q  VT +  N++YEINEVRRD   E+ L 
Sbjct: 60  QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     DD     PGS++N     +KV+TP+++A +Q L Q  ++   V A+     
Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179

Query: 188 VTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                     D  F+        + +  +  L  LR F KE    Y ++RD PAI+GTS+
Sbjct: 180 KVDECDLFSKDCSFRYPTEESQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL             G  +WL+ELIWREFY+HL+ F P +  G
Sbjct: 240 LSPYLAIGALSVRQCMARLL---YQQTAPLSEGRQTWLSELIWREFYQHLLYFEPKLSRG 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+PW   + W      ++AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 297 ESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G F
Sbjct: 357 LQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL ++P + IH P  WL       +YP PIVDHK     TL  Y  AK
Sbjct: 417 VRRWVPELADLPDKQIHQPSKWLSVK--GSSYPAPIVDHKVQREITLANYKNAK 468


>gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
 gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
          Length = 465

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 209/468 (44%), Positives = 284/468 (60%), Gaps = 6/468 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW R+DLR+ D+ ALYAA  + +  + A++  TPEQW++  ++  ++  I   L Q+
Sbjct: 2   TSLVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            ++L+  GI F     +++      L SYC Q  V++LF NR   I E+ RD  ++++  
Sbjct: 61  GEALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCD 120

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  + FD   +  PGS+L  + +M+KV+TPF KA ++ L     +  P P+ R    
Sbjct: 121 ATGIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSAR---- 176

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +         +     +P+GE   L  L+ FC EK+  Y EQRD PA  GTS++SP
Sbjct: 177 GGILSWSSVSIDYPRVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISP 236

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G++S RQC   ++     L  +  +  F WLNELIWREFY+HL+  +P V   K F
Sbjct: 237 YLTLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAF 296

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P T+ I W  D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL KDL +
Sbjct: 297 KPETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHI 356

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFM  L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ 
Sbjct: 357 DWRLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQ 416

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           WLPEL  VP +YIH PH WL   D   +YP PIVDH ++    L  + 
Sbjct: 417 WLPELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSESRTIALALFQ 464


>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
 gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
          Length = 487

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 240/495 (48%), Gaps = 24/495 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++    +VW R+DLR+TDN AL  A   S    + V++   E      +      +
Sbjct: 1   MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLERE--GTRPLGGAARWW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +  SL+  G      +     D  E + +   +     +++NR+Y+      D
Sbjct: 58  LDGALRSLDASLAGHGGRLLVLE----GDERETIAALAEELDAGAVYWNRRYDGIARETD 113

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQA 172
             L++ L+   I  +SF+ ++L  P  +   +   ++V+T + +A +++          +
Sbjct: 114 GALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLAEPS 173

Query: 173 DLRSLPVPA--IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
             R   +PA   R    +    +          +   +   E+ AL +L +F  +K+  Y
Sbjct: 174 TWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPTEEAALELLERFLDKKIRGY 233

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E RD P    TS+LSPYL  G LS RQ W+       +      +    +++EL WREF
Sbjct: 234 GEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P +     +    + + W  D     AW +G TG+P++DA MR+L T GWMH
Sbjct: 294 DTSLLYHFPELPTRN-YRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D+A+N+  WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464
           P  QG++FDP+G ++R W+PEL  +P   IH P              L   YP PIVDH 
Sbjct: 413 PVTQGRKFDPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHD 472

Query: 465 KACHHTLNQYYAAKK 479
            A    L      K+
Sbjct: 473 AARQRALGALELTKR 487


>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
 gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
          Length = 492

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 148/478 (30%), Positives = 229/478 (47%), Gaps = 16/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR+DLR+ DN AL  A    +  ++ + +   E      +      +++ SL     
Sbjct: 20  VVWLRDDLRLDDNPALALAAET-NRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESFAS 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  KG      +    D  ++ ++    +   + LF+NR+Y+      D  + + L  +
Sbjct: 79  SLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDDAIGEALGDQ 134

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLTG 186
           V  + F  ++L  P ++   +   YKV+TPF + + +    + +              + 
Sbjct: 135 VSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDPPDGLKQPDTFPQSD 194

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +    +          I   +  GE+ A      FC + +  Y + R+ P    TS++S
Sbjct: 195 DLEDWELLPTKPDWSGGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDTSRMS 254

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G +SP + W+  +         P     ++L EL+WR+F  HL+  +  +     
Sbjct: 255 PYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLLFHFGPLADKN- 313

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    +   W      L+AW+ G TG+PI+DA MRQL   GWMHNR+RMI  SFL KDLL
Sbjct: 314 FNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFLTKDLL 373

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE +F   L+DGD+ASN   WQW    G D+ P+FRIFNP  Q +RFD  G +IR
Sbjct: 374 IDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKNGAYIR 433

Query: 427 HWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL  +P ++IHAP              L   YP P+VDH +A    L+ Y   K
Sbjct: 434 QFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSAYDEVK 491


>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
 gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
          Length = 481

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474


>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 482

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 245/483 (50%), Gaps = 22/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++ SL  + +
Sbjct: 10  ILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEALNR 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +              +++E L ++  +     +F+NR+Y+   +  D  ++  L+ +
Sbjct: 69  SLQKLNGRLVL----ASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARIKHELEKQ 124

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            I        LL   S L       Y+VYTPF +AL      +  + A  +       + 
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKLRLASQPKS 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +   +P   D+    +D   P GE+ A   L  F ++ +  Y E RD PA   TS 
Sbjct: 185 EVLGSWKLLPTKPDWAGDFVDLWTP-GEEGAQQRLHVFVEDALEGYKENRDYPARPATSM 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L++G +SP + W+  +     +          +  E+ WREF  HL+  +P +   
Sbjct: 244 LSPHLALGEISPARIWDATRGLSQRVPAA---DIVHFREEIAWREFSYHLLFHFPRLASA 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +  EW  +S   +AW++G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KD
Sbjct: 301 NW-NDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG++FDP G +
Sbjct: 360 LMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDGDY 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PEL  +  +YIH P              L   YP PIVDH  A +  L  Y A +
Sbjct: 420 VRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNRALAAYKAIR 479

Query: 479 KQS 481
             +
Sbjct: 480 DAA 482


>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 483

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 218/482 (45%), Gaps = 21/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+AA   S A V+ V++          +      ++  SL  ++ 
Sbjct: 11  IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARWWLAQSLRSLEA 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G +    +      +   L     Q     + +N             L   L   
Sbjct: 70  ELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTMA 125

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184
            I         L+ P +I +   +  +V+TPF + ++        +       P PA+  
Sbjct: 126 GIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPAALRPAPALPG 185

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P   D+         P   + A          ++  Y E RD P    TS 
Sbjct: 186 AQLSDWQLEPTAPDWAGGLRATWRPG--EAAAKTRLADFLARLPGYAEGRDYPDRHVTSG 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +SPRQ W   +    +           +L+EL WREF RHL+A +P +   
Sbjct: 244 LSPYLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSELGWREFCRHLLADHPDLAAR 302

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               P  +   W  D   L AW++G TG+PI+DA M +L   G MHNR+RM+  SFLVK 
Sbjct: 303 N-LQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHNRVRMVVGSFLVKH 361

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +Q ++FD  G +
Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDADGAY 421

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL  +P   IH P +           +L  NYP PIVDHK A    L+ Y   +
Sbjct: 422 IRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKAARQRALSAYSELR 481

Query: 479 KQ 480
           ++
Sbjct: 482 QR 483


>gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
 gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
          Length = 483

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 219/475 (46%), Positives = 281/475 (59%), Gaps = 5/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR+ DN AL  AC + +  VIA++  TP QW+ H ++  Q+  I   L+ +
Sbjct: 1   MKLVWFRRDLRVKDNVALTEACKSGE-PVIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   +     + D  + L   C Q ++  +F  R YE +EV RD  +   L 
Sbjct: 60  RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   FD   +  PG + N A   Y+V+TPF+KA I    Q DL  +  P+   T  
Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +T        +      Q     +PI +   +  LR FC+ +V +Y   RD PAI GTSQ
Sbjct: 180 LTSALLRQPCQIAFRYPQCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG +SPRQC  RL  E  + + K   GA  WL+ELIWREFY+H+ A Y  V  G
Sbjct: 240 LSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDVSKG 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F  WT+ IEWN+D    Q WKQG TGFPI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 300 KAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q K+FDP   F
Sbjct: 360 LHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPNVRF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WL EL +VP   +H PH W +K  + L+YP PIVDHK A    +  +  AK 
Sbjct: 420 IRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAKN 474


>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
 gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
          Length = 503

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 174/492 (35%), Positives = 253/492 (51%), Gaps = 34/492 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65
           M+V LVW R DLR  D+ ALY A    + +V   F+   +        + R+  FI+A++
Sbjct: 24  MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82

Query: 66  LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +++ ++L          G             + E + +      V  ++ NR YE   + 
Sbjct: 83  VELDRALEALSREAGGSGSGLIVRH----GRAQEAIPALAQALGVDAVYVNRDYEPAAIA 138

Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD+ + +RL       + F D V+     +L  A Q + V+TP++ A ++ L    L++ 
Sbjct: 139 RDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAY 198

Query: 178 P--VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVE 232
           P    A RL        +P      F+  D      P G   A   L      ++  Y  
Sbjct: 199 PIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARA-LFGDFCGRIEDYRI 257

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G +  R+       +          GA +WL+ELIWR+FY+
Sbjct: 258 ARDFPAVKGVSYLSTHLRFGTIPVRELAAYAVHQGGA-------GAQTWLSELIWRDFYQ 310

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  +P V   + F P  ++I W+    L  AW++G TG+PI+DA MRQL   G+MHNR
Sbjct: 311 MILWHHPRVVD-QAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMHNR 369

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFNP 
Sbjct: 370 LRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPV 429

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
            Q ++FDP+G FIR ++PEL  VP ++IHAP              +  +YP P+VDH  A
Sbjct: 430 TQSQKFDPEGRFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALA 489

Query: 467 CHHTLNQYYAAK 478
              TL ++   K
Sbjct: 490 RERTLARFAVTK 501


>gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
 gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
          Length = 481

 Score =  326 bits (834), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 190/473 (40%), Positives = 268/473 (56%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       + AV++ TPEQW  H  +  +  F   +L  +
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQR--GPIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +D +   L   C +  V  +  N +Y I+E RRD  + K L+
Sbjct: 59  SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +   S+ D +   PGS+L      ++V++ FRK     L  A  R +  P  +    
Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F+ P QA+  ++P GE  A   L  F  +++ YY ++RD PA  GTSQ
Sbjct: 179 LKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +           GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  + + 
Sbjct: 419 IKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAFRSL 470


>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
 gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
          Length = 483

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 213/482 (44%), Gaps = 21/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+AA   S A V+ V++          +      ++  SL  ++ 
Sbjct: 11  IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +          L     Q     + +N             L   L   
Sbjct: 70  ELRALGGALILRRGPT----AAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVA 125

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184
            I         L+ P +I +   +  +V+TPF + ++        +       P PA+  
Sbjct: 126 GIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAVPT 185

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P   D+         P   + A              Y E RD P    TS 
Sbjct: 186 EQLSDWQLEPTAPDWAGGLRQTWTPG--EAAAQTRLAAFLAMQPGYAEGRDYPDRHITSG 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SPRQ W   +    +           +L+E+ WREF RHL+  +P +   
Sbjct: 244 LSPHLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSEVGWREFCRHLLFDHPDLASR 302

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHNR+RM+  SFLVK 
Sbjct: 303 N-LQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +Q ++FD  G +
Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL  +P   IH P +            L  NYP PIVDHK      L+ Y   +
Sbjct: 422 IRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAYAELR 481

Query: 479 KQ 480
           ++
Sbjct: 482 QR 483


>gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
 gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
          Length = 489

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/486 (30%), Positives = 229/486 (47%), Gaps = 24/486 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R+DLR+TDN AL  A   S   ++ V++   +      +      ++  +L  + 
Sbjct: 12  ALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERD--GTRPLGGAVRWWLDGALRSLD 68

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+ +G      +     D  E + +   +     +++NR+Y+      D  L++ L+ 
Sbjct: 69  AKLAAQGGGLVVLE----GDERETIAALAGELGAGAVYWNRRYDGLARETDAALKRSLKE 124

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV-------QADLRSLPVPA 181
             I     +  L   P  I   +   ++V+T + +A              A  R   +P 
Sbjct: 125 AGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPAKWRFHRLPE 184

Query: 182 IRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                      +      P  A  +   +   E+  L  L  F  +++  Y + RD P  
Sbjct: 185 ALARRATRIDALGLLPVRPDWAGGLREAWEPSEEGGLARLEAFLDKQIRGYGDARDRPDR 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSPYL  G LS RQ W+  +    +      +    +L+EL WREF   L+  +P
Sbjct: 245 PATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELGWREFNTSLLYHFP 304

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            + M   +    + + W  D     AW +G TG+P++DA MR+L   GWMHNR+RM+TAS
Sbjct: 305 ELPMRN-YRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMHNRVRMVTAS 363

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL+K LL+DWR GE +F   L+D D+A+N+  WQW A +G D+ PYFRIFNP +QG++FD
Sbjct: 364 FLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFNPVMQGRKFD 423

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R W+PEL  +P   IH P              L   YP PIVDH  A    L  
Sbjct: 424 PDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARKRALGA 483

Query: 474 YYAAKK 479
             A K+
Sbjct: 484 LEATKR 489


>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
 gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
          Length = 481

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 165/486 (33%), Positives = 248/486 (51%), Gaps = 24/486 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR  D+ ALY A  +S+ +V+  F+   +         R+  FI+ S+ 
Sbjct: 1   MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L ++G             + E + +      V  ++ NR YE   V+RD  + ++
Sbjct: 60  ELKLALQERGGDLLVRH----GKATEEIPALASVLGVECVYCNRDYEPAAVKRDDTVSQQ 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182
           L  + I  KSF D V+     I+  +   + V+TP++ A ++ L                
Sbjct: 116 LGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHH 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  P        +    +  +      +    L +   E++  Y + RD PA++G 
Sbjct: 176 LAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDFSERMPRYRDARDFPALKGP 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +L  G +S R       ++          GA +WLNEL+WR+FY  ++  +P V 
Sbjct: 236 SYLSVHLRFGTVSIRHLARTAWQQGGA-------GAETWLNELLWRDFYFQVLYHHPQVA 288

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F P  E I +     L +AW +G TG+P++DAAMRQ+N  G+MHNRLRM+ A FLV
Sbjct: 289 EGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVAAGFLV 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FDP+G
Sbjct: 349 KDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEG 408

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR ++PEL     + IHAP              +  +YP P+VDH       L+ Y  
Sbjct: 409 KFIRKYVPELQPCDDKEIHAPWLIPPLRQQALGLVIGKDYPAPVVDHAMRREQVLSLYRQ 468

Query: 477 A--KKQ 480
           A  +K+
Sbjct: 469 ASSRKK 474


>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
 gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
          Length = 471

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +     D  E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRK----GDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  R I     +  L   P +I N     +KV+TP+ K   Q  N+    + +     I 
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T                      +  GE+ A   L +F    +  Y  +RD PA   TS
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      L+   ++      +    +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGI 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +  D N +     YP PI+DH++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 492

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 177/498 (35%), Positives = 246/498 (49%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E  +               R+
Sbjct: 1   MQKGLVWLRRDLRLYDNAALHYALKESK-QVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  L Q+ + L ++G          F   +E +        V  +F N  YE + +
Sbjct: 60  VDFIWQGLEQIDEELRKQGGGLIVR----FGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115

Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ ++  L    I    F D V+     IL ++  ++ ++TP++   ++ L + DL +
Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175

Query: 177 LPVPAIR------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               A                       +    I+   P G +     L  F      Y 
Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLPRIDQYQ 235

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           V  RD PAI+G S LS +L  G+LS R          +        GA  WL+ELIWR+F
Sbjct: 236 V-GRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGS----MGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W +      L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL VDWR GE YF   L D +L+SNNGGWQWA+S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIV 461
           IFNP  Q ++FDP+G FIR +LP+LN++  + IHAP              L  +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisA53]
 gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisA53]
          Length = 483

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 223/481 (46%), Gaps = 18/481 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R+DLR++D+ AL AA  +S   V+ +++   +      +      ++  SL  +Q
Sbjct: 9   SLVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQ 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + LS++G      +      + + +     +     ++YN             L   L  
Sbjct: 68  QILSERGATLMLRR----GAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAATLAD 123

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRL 184
             I        +L  P +I     +  +V+TPF K ++     A     P     P    
Sbjct: 124 HGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAKPLPAPTALGPPPAAA 183

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +          +   +  GE  A   L  F    +  Y   RD P   GTS 
Sbjct: 184 SDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRPGTSL 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G + PRQ W+  +                +L+EL WREF RHL+  +  +   
Sbjct: 244 LSPHLRFGEIGPRQIWHAAR-FAAAARPAIAGDVDKFLSELGWREFCRHLLFDHSDLATR 302

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               P  +   W +D   L+AW++G TG+PI+DA MRQL   G MHNR+RM+ ASFLVK 
Sbjct: 303 N-LQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVASFLVKH 361

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +QG++FDP G +
Sbjct: 362 LLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFDPDGAY 421

Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PEL  +P   IH P +            L  NYP PI++H++     L  Y   +
Sbjct: 422 VRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGRERALAAYATVR 481

Query: 479 K 479
           K
Sbjct: 482 K 482


>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/478 (31%), Positives = 225/478 (47%), Gaps = 16/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR+DLR+ DN AL  A  +S   V+ + +   E      +      +++ SL    K
Sbjct: 11  VVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCFGK 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ KG      +      + E +         T L  NR+Y+      D  +E  L   
Sbjct: 70  DLADKGAPLILRR----GKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSD 125

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTG 186
           V  + F  ++L  P  +       YKVYTPF K L ++     +    +   +     + 
Sbjct: 126 VEVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRSD 185

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   ++          I   + +GE  A     +F  E +  Y + RD P    TS++S
Sbjct: 186 RLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPDGRDRPGDDATSRMS 245

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +SP + W+  +         P     ++  EL+WR+ + + +         + 
Sbjct: 246 PHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRD-FNYHLLHNFGPLATQN 304

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +    +   W      L+AW++G TG+PI+DA MRQL   GWMHNR+RMI  SFL KDLL
Sbjct: 305 YNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNRVRMIVGSFLTKDLL 364

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE +F   L+DGD+ASN   WQW   +G D+ PYFR+FNP  Q +RFD  G +IR
Sbjct: 365 IDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPVTQSQRFDGDGDYIR 424

Query: 427 HWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL ++P + +HAP             +L   YP PIVDH  A    L+ Y   K
Sbjct: 425 RFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTARKRALDAYGEVK 482


>gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 172/486 (35%), Positives = 258/486 (53%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR TDN AL+ A      +   +IA++I +P+ +  H  +  +  F+  +L  
Sbjct: 243 VHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVRVDFMLRTLEI 302

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L+   I           +    +     +   + LF N +YE++E+RRD  + + L
Sbjct: 303 LKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDELRRDARMARLL 362

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R  +     D+ ++PPG + + +   Y VYTP+ +  ++++ +       V +     
Sbjct: 363 AKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRHVHENLDLLELVESPTKNP 422

Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             T   +   F+ P               +    ++P GE  A+  L KF  + +  Y +
Sbjct: 423 ESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSKFADQAIGKYQQ 482

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+IP+  GTS LS + + G LS R      +       L     G  +W+ E+ WR+FY
Sbjct: 483 NRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQTWIREVAWRDFY 542

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM KPF P    IEW+ +     AWK+G TGFPI+DAAMRQL ++GW+HN
Sbjct: 543 KHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAMRQLRSMGWVHN 602

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 603 RCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 662

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  V  + IH P+        +   YP  IVDHK A   T
Sbjct: 663 LLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKHIVDHKGARERT 722

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 723 LAAYKK 728


>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
 gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
          Length = 481

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 168/475 (35%), Positives = 246/475 (51%), Gaps = 17/475 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL  A  +S   V+ ++I   E      + A    ++  SL  + +
Sbjct: 16  IVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLDKSLKSLAQ 73

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G      +      + + LD+   +   T + +NR Y+   V RD  ++ RL+  
Sbjct: 74  ELEKLGNRLVLRK----GVAADVLDALIAETGATGVVWNRLYDKASVDRDATIKARLKEA 129

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVPAIRL 184
            + C+SF+  +L  P ++ N + Q YKV+TP+ +A  Q+L       A      +     
Sbjct: 130 GVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVLRCLDKAVR 189

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           + P+   ++        +  D   P GE  A   L  F    +  Y E+RDIP+   TS+
Sbjct: 190 SEPLAAWDLHPTRPDWSKGFDLWTP-GEAGARARLDAFLSGPITGYGEKRDIPSAPATSR 248

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G + PRQ W   +    +    P + A  +L+EL WREF   ++  +P +   
Sbjct: 249 LSPHLHFGEIGPRQVWLAARNA-AEAGDIPTAEADKFLSELGWREFNHSILFHWPQLPAR 307

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  +   W KD    +AW +G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K 
Sbjct: 308 N-FKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKH 366

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE +F   L+D DLA+N G WQW A +G D+ PYFRIFNP  QG++FDP+G +
Sbjct: 367 LMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEKFDPRGDY 426

Query: 425 IRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R W+PEL  VP   IH P              Y  PIVDH KA    L  Y++ 
Sbjct: 427 VRRWVPELKTVPDDVIHKPWERPLHLSPAARRIYAKPIVDHAKARERALEAYHSL 481


>gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
 gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
          Length = 476

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 277/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + +RL+
Sbjct: 59  QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +    
Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHA 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTSQ
Sbjct: 179 LASDPLPDAVPAFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFPALPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF   TE + W +    L+AW+QG TG  IIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +   
Sbjct: 419 IRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 469


>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
 gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
          Length = 485

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/487 (29%), Positives = 220/487 (45%), Gaps = 22/487 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYAS 64
           +  +VW R+DLR++D+ AL AA  ++ A +I +++    +  +HG   + A    ++  S
Sbjct: 6   ATAIVWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAAQWWLANS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L + G      +     D+ E L     +     +F+       E  R + + 
Sbjct: 65  LRALDTDLKKLGQHLVLRR----GDAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVA 120

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L+   +      S LL     + +               ++   +       V  +  
Sbjct: 121 EALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRAQGEPPRPLAAVRKLPP 180

Query: 185 T------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    +    +              +  GE  A   L  F    +  Y E RD P 
Sbjct: 181 PVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAIKGYAEGRDFPG 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSP+L  G +SPRQ ++  +    +           +L+EL WREF RHL+  +
Sbjct: 241 KDHASHLSPHLRFGEISPRQVFHAARFA-AERHPALSRDIEKFLSELGWREFCRHLLFDH 299

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +          +   W +D+  L+AW+QG TG+PI+DA MR+L   G M NR+RM+TA
Sbjct: 300 PDLHRHN-LQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGAMQNRIRMVTA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+DWR GE++F   L+D D  SN G WQW A  G D+ PYFRIFNP +QG++F
Sbjct: 359 SFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           DP G ++  W+PEL+ +P   IH P              L   YP PIVDHK A    L 
Sbjct: 419 DPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVDHKDARERALA 478

Query: 473 QYYAAKK 479
            Y   ++
Sbjct: 479 AYRRTRR 485


>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 474

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 239/482 (49%), Gaps = 24/482 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW+R DLRI D+ AL AA       VI ++I +P++     +      +++ SL  
Sbjct: 3   KVTIVWMRQDLRIEDHPALDAAAQR--GSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKS 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L   G+     +      S++ L     +     +F++R+YE   ++RD  ++ +L
Sbjct: 61  LENDLRSLGLPLIIRK----GKSLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKL 116

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAI 182
               +  KSF  +VL  P SI N   + ++V+T F K  +         +    +    +
Sbjct: 117 SEEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKEQPLAPLSAPIGVKGKIV 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +                 + I   +  G   A   L  F +   + Y E+RD P + G 
Sbjct: 177 EVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPGV 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  G +S R  W+ + ++              +L +L WR+F  HL+  +P   
Sbjct: 237 SRLSPYLHFGEISVRMVWDEIVKKLGFQEA------EPYLRQLGWRDFAYHLLYHFPKTP 290

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P         W ++  LL+ W++G TG+P +DA MRQL   GWMHNR RM+  SFLV
Sbjct: 291 E-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFLV 349

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+ W+ G ++F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  QG++FDP+G
Sbjct: 350 KDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPEG 409

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +++R W+PE+ N+P ++IH P              L   YP PIV+H +A    L  +  
Sbjct: 410 SYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAFEE 469

Query: 477 AK 478
            K
Sbjct: 470 IK 471


>gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 475

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 185/468 (39%), Positives = 271/468 (57%), Gaps = 6/468 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+WLR DLRI DN AL AA  +      A+FIATPEQW+QH ++  Q  FI   L  +
Sbjct: 1   MNLMWLRRDLRIDDNPALIAALQS--GPTQALFIATPEQWQQHDMAPIQVDFIERHLNLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI        N+      L  +C  Q+++++F N++ E   +       + L 
Sbjct: 59  AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVE---LNECIRDRQILA 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++  V++P G++      M+ V+TPFR A ++ L Q  +++   P+  LT   
Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTH-Y 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                 +      +     +P+      H++ +F + K   Y + RD PA++GTS +SPY
Sbjct: 175 QSIRAEKIVLEATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+IG LS +   +++ +    +L   K+  F WLNEL WR+FY+HL+  YP++  G  F 
Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W   +    AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K LLVD
Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE++FM  L+DGD ++NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP G+FIR +
Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           LPEL+NVP +YIH PHS+L     S  Y   IV+H +A    L  Y  
Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQARQIALAFYKQ 462


>gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
          Length = 483

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 215/482 (44%), Gaps = 21/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+AA   S A V+ V++          +      ++  SL  ++ 
Sbjct: 11  IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      +   L     Q     + +N             L   L   
Sbjct: 70  DLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVA 125

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184
            I         L+ P +I +   +  +V+TPF + ++        +       P PA   
Sbjct: 126 GIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAPPS 185

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P   D+         P   + A           +  Y + RD P    TS 
Sbjct: 186 DQLGDWQLEPTAPDWAGGLRQTWTPG--EAAAQARLSDFLAGLPGYADGRDYPDRHITSG 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SPRQ W   +    +           +L+EL WREF RHL+  +P +   
Sbjct: 244 LSPHLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSELGWREFCRHLLFDHPDLATR 302

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHNR+RM+  SFLVK 
Sbjct: 303 N-LQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +Q ++FD  G +
Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PEL  +P   IH P +           +L  NYP PIVDHK      L+ Y   +
Sbjct: 422 IQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALSAYAELR 481

Query: 479 KQ 480
           ++
Sbjct: 482 QR 483


>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 581

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 172/488 (35%), Positives = 251/488 (51%), Gaps = 19/488 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ D++ALYAA          +I +++ +PE W  H  S  +  F   +L +
Sbjct: 94  VHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARVDFTLRTLKR 153

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L +  I                +   C Q     L+ N +YE++E+RR+  L +  
Sbjct: 154 LQQDLGELDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDELRREAKLVRLC 213

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I  +   D+ ++ PG++ +   + Y VYTP+ ++ +  L +               
Sbjct: 214 ADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYLEVSEEPGSNP 273

Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    FFD                 +  + ++P GE  AL  L  F +EK   Y E
Sbjct: 274 GNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNFLEEKGKEYEE 333

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R + + + TS LSPY + G LS R      K      + +   G  +W++EL WR+FY+
Sbjct: 334 TRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWISELAWRDFYK 393

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    IEW  D    QAW  G TGFPI+DAAMRQL    WMHNR
Sbjct: 394 HVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWMHNR 453

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RM+ +SF  KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 454 TRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP+G +I+HWLPEL +V  + IH P++         N YP PIVDH ++    L
Sbjct: 514 RQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIVDHAESRDRAL 573

Query: 472 NQYYAAKK 479
            ++  A K
Sbjct: 574 ERFKKALK 581


>gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
 gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
          Length = 480

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 185/473 (39%), Positives = 266/473 (56%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       V AV++ TPEQWR H  +  +  F   +L ++
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQR--GPVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +      +   C +  V  +  N +Y I+E RRD  + ++L+
Sbjct: 59  SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    + D +L  PGS+L      ++V++ FRK     L  A  R +  P  +    
Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +P+    F+ P   +  ++P GE  A   L  F ++++ YY ++RD PA  GTSQ
Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +           G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  + + 
Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAFRSL 470


>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
 gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
          Length = 477

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 194/474 (40%), Positives = 271/474 (57%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR +DN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLVWFRCDLRTSDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  +   L   C +  +  +  N++Y  NE RRD+ + + L+
Sbjct: 59  QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIR 183
            + +      D +   PGS+L      ++V++ FR+   + L QA      R  P P  R
Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQPRPQPQPPHR 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L       +    F  P   +  ++P GE  A   LR F ++ +  Y EQRD PA+ GTS
Sbjct: 179 LLPGDPLPDAVPGFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDFPALPGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 239 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILVGYPRVSR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 299 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q KRFDP+G 
Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSKRFDPRGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P          ++YP  +VD K +    L  +   
Sbjct: 419 FIRHWLPELAGLERKAIHDPSRLGLFA--GVDYPQSMVDLKASRERALAAFRDL 470


>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 471

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 248/478 (51%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  +I ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +       +E +     Q  +  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRK----GSPLEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  + I     +  L   P +I N     +KV+TP+ K   Q  N+    + +     I 
Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T                      +  GE+ A   L +F    +  Y  +RD PA   TS
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      L+   ++      +    +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASLEHFLSELGWREFSVYLLYHFP-KLD 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +  + + +     YP PI+DH++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDANASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
 gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
          Length = 486

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 204/480 (42%), Positives = 284/480 (59%), Gaps = 12/480 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R+DLR  DN+AL  A   ++A    +IA +IATP+QW +H +SA Q  FI   L  +
Sbjct: 9   VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++  I F+   C +F    E L   C    + +LF NR+Y +NE++RD+ + + L+
Sbjct: 69  QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I    FDD  LL PGS+       YKV+TPF+K   + L +AD+   P   I    P
Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188

Query: 188 VTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +  P             + ++ ++P GE  AL  L  F + ++++Y ++RD P  +G
Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL+IG LSPR                   GA +W++EL+WR+FY+H++  +P V
Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ F P TE I W  D    QAW +G TG PI+DAAMRQL   GWMHNRLRM+TA FL
Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE+YF  QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP  QG+RFD  
Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G FIRH++PEL ++P +Y+H P +  D + L  +YP PIVD K +    +  +  A + S
Sbjct: 429 GAFIRHYVPELKDLPNKYLHEPWTHPDADQL--DYPQPIVDLKLSRQRAIEVFRQASEHS 486


>gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 471

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 164/481 (34%), Positives = 253/481 (52%), Gaps = 27/481 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPEQWRQHGISARQSHFIYASLLQ 67
            +VW R D R+ DN AL AA       VI VF  +  PE  ++  +      ++Y SL+ 
Sbjct: 5   SIVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPE--KEWQLGGASQWWLYYSLIS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+ G+     +    +D ++ L     +     +++NR+YE   ++ D  ++  L
Sbjct: 62  LKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q + I   SF+ ++L  P +I N   + ++V+TPF    ++         +P    +  G
Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKFVG 177

Query: 187 PVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +   +I            + +  ++  G ++A  +L+K     +  Y++ RD+P   GT
Sbjct: 178 QLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHDGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL  G +SPR  W  +KE           GA  +L ++ WREF  HL+  +P   
Sbjct: 238 SLLSPYLHFGEISPRMIWQAVKENSTSK------GAEGYLRQIGWREFAHHLLYHFPETP 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP         W  D   L+AW++G TG+PIIDA MRQL  IGWMHNR+R+I  SFLV
Sbjct: 292 Q-KPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSFLV 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL++ W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG++FDP+G
Sbjct: 351 KDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDPEG 410

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +++ W+PEL N+P +++H P    ++       +L +NYP PIV+H KA    L  Y  
Sbjct: 411 NYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAYSR 470

Query: 477 A 477
            
Sbjct: 471 L 471


>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 483

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 155/483 (32%), Positives = 244/483 (50%), Gaps = 21/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++ SL  + +
Sbjct: 10  ILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLHHSLEALNR 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++             +++E L ++  +     +F+NR+Y+   +  D  ++  L+ +
Sbjct: 69  SLQKRHGRLVL----ASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQ 124

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            I        LL   S L       Y+VYTPF +AL      +  ++A         +  
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAELRLTSQLPT 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +             ++  GE+ A   L  F ++ +  Y E RD PA   TS 
Sbjct: 185 SETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVEDALEGYKENRDYPARPATSM 244

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L++G +SP + W+  +     +          +  E+ WREF  HL+  +P +   
Sbjct: 245 LSPHLALGEISPARIWDATRGLSQRVPAA---DIVHFRKEIAWREFSYHLLFHFPRLASA 301

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  + +EW  DS   +AW++G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KD
Sbjct: 302 NW-NDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG++FDP G +
Sbjct: 361 LMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPNGDY 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++ ++PEL  +  +YIH P              L   YP PIVDH  A +  L  Y A +
Sbjct: 421 VKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRALAAYSATR 480

Query: 479 KQS 481
             +
Sbjct: 481 DAA 483


>gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217]
 gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans
           OS217]
          Length = 497

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 195/488 (39%), Positives = 268/488 (54%), Gaps = 22/488 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              L+W RNDLR+ DN AL AAC        KV AV++ TP+QW+ H ++  Q  FI   
Sbjct: 15  PNSLMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRH 74

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + +SL   GI         FDD+   L  Y  + ++  +F     +  E+   +   
Sbjct: 75  LELLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFA---GKEPEINEQRRDN 131

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +   +         LL PG++LN +  MYKV+TPF K   Q  + A ++ LPVP    
Sbjct: 132 ALIASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQ--IAASMQILPVPVPAP 189

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G       P  FD P ++ +     GE  A  IL +F  + V  Y   RD PA +GTS+
Sbjct: 190 VGSAITQIAPIVFDCPMRSSEAW-QAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSR 248

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++SP+QC   + + F + L+   S A +WLNEL+WREFYRHL+  +P + MG
Sbjct: 249 LSPYLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMG 308

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F    + I+W  D     AW +G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL K 
Sbjct: 309 HNFNALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKH 368

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE+YF  QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P  Q  +FD    F
Sbjct: 369 LLIDWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEF 428

Query: 425 IRHWLPELNNVPTQYIHAPH-------------SWLDKNDLSLNYPLPIVDHKKACHHTL 471
           I+ ++PEL+ V  + IH                +  +    S  YP PIV+H  A    +
Sbjct: 429 IKRFVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAI 488

Query: 472 NQYYAAKK 479
               A KK
Sbjct: 489 EVLSALKK 496


>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
 gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 245/480 (51%), Gaps = 19/480 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++WLR DLR  DN A+  A   S A V+ +++          + A Q  +++ SL   ++
Sbjct: 6   ILWLREDLRFDDNPAMREAA-ASGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G      +        E + +   + + + +F+NR+Y   +   D  ++  LQ  
Sbjct: 65  DLETRGGALILRR----GKETEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQDM 120

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVPAIRL 184
            I   S +  +L  P  I   +   YKVYTP+ K+L Q       +    +    P++  
Sbjct: 121 GIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQKEGPRAALPRTDKLNAPPSLPS 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T  +   N+        +  +P++  GE+ A   LR +       Y + R+ P    TS+
Sbjct: 181 TDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDRTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SP   W+ + +      I    G  S+L+E+ WREF   L+ ++P++   
Sbjct: 241 LSPHLHFGEISPVVLWHSVSDAMEAGDIPKDQG-TSFLSEIAWREFSYQLLYYHPTM-RD 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +P +      EW+ D   L AW++G TG+PI+DA MRQL T GWMHNR+RMI  SFLVKD
Sbjct: 299 QPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR G  +F   L+D D A+N   WQW A  G D+ P+FRIFNPT Q ++FDP G +
Sbjct: 359 LLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPDGAY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PEL ++PT++IH P              L   YP PIVDH       L++Y A K
Sbjct: 419 IRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSRYEAIK 478


>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
 gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
          Length = 476

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 186/475 (39%), Positives = 272/475 (57%), Gaps = 10/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN ALY A       V+AV++       +  I+  +  FI   LL +
Sbjct: 2   TALVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+Q  I  +    +  +     L +   Q  + K F+N +Y ++E+ RD  + + L+
Sbjct: 61  VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +  K   D V++PPG I     + YKV+T F++  +Q ++   L+ L +P  +    
Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPM 180

Query: 188 VTPSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                     +     +  + ++ ++P GE  A   L  F +  + +Y ++RD PA+QGT
Sbjct: 181 PVKPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG LSPRQ  + +   +     +  +GA  W++ELIWREFY+H++  +P VC
Sbjct: 241 STLSPYLAIGSLSPRQAISSVL-CYTQGDWESNAGASCWISELIWREFYQHVVVDFPQVC 299

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +     TE   W KD      W QG TG P++DAAMRQL   GWMHNRLRM+ A FL 
Sbjct: 300 KHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVAMFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L +DWR+GE +FM  L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q +RFDPQG
Sbjct: 360 KNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERFDPQG 419

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            FIR W+PEL +VP +YIH P +  DK+  SL YP P+VD  ++   T+  +   
Sbjct: 420 DFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTIALFSQL 472


>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
 gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
          Length = 471

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 165/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +        E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLCLVLRK----GAPQEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLA 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  R I     +  L   P +I N     +KV+TP+ K   Q  N+    + +     I+
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIK 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T                      +  GE+ A   L +F    +  Y  +RD PA   TS
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      L+   ++      +    +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +  D + +     YP PI+DH++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 495

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 173/491 (35%), Positives = 244/491 (49%), Gaps = 21/491 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R DLR  D+ ALY A      +V  VF+   +       + R+  FI  SL+Q
Sbjct: 8   SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEFIRESLVQ 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL                 + E + +  ++  V  LF N   E   + RD  +  RL
Sbjct: 67  LDASLRDLSGHRHGGLIVRHGVAAEEVPALAVRLGVQALFANHDDEPAALERDDRVRHRL 126

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180
               +   ++ D  +     +L      Y V+TP++ A ++ +    L + PV       
Sbjct: 127 GAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 186

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A R  G            +    +D +           L     +++  Y E RD PA++
Sbjct: 187 APRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFLQRIDQYGEARDFPAVK 246

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS +L  G LSPR+      E           GA +WL+ELIWR+FY  ++A +P 
Sbjct: 247 GPSYLSVHLRFGTLSPRRAARAAHERMRQGST----GAATWLSELIWRDFYFQVLAHHPQ 302

Query: 301 VCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V  G  F P  + I W    +      AW +G TG+P++DAAM Q+N  G+MHNRLRM+ 
Sbjct: 303 VAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVV 362

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++
Sbjct: 363 ASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRK 422

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471
           FDP+G FIR +LP+L  +P +++HAP              L  NYP PIVDH +A   TL
Sbjct: 423 FDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDHDEARQKTL 482

Query: 472 NQYYAAKKQSL 482
            +Y   K ++ 
Sbjct: 483 ARYAVVKSEAA 493


>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
          Length = 635

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 258/486 (53%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI+DN+AL  A      +   +IA++I +P+ +  H  +  +  F+  +L  
Sbjct: 144 VHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSV 203

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           +++ L++  I              + +     +   + L+ N +YE++E  R   +++  
Sbjct: 204 IKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIKDF 263

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++    +   D+ ++PPG +   A + Y VYTP+ K  I ++ +               
Sbjct: 264 AENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPPEKNP 323

Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + F+                 + +  ++P GE  A   L KFC+E++  Y E
Sbjct: 324 DSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIGNYHE 383

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IPA   TS LS +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 384 KRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAWRDFY 443

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQ+NTIG+MHN
Sbjct: 444 KHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIGYMHN 503

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR GE+YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 504 RCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 563

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL ++  + IH P++           YP PIV HK      
Sbjct: 564 LLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDCRERA 623

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 624 LAAYKE 629


>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
 gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
          Length = 482

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 155/485 (31%), Positives = 246/485 (50%), Gaps = 17/485 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+   ++W R DLR+ D  AL AA  +   +V+ ++I   +      +      +++ SL
Sbjct: 1   MTDTVILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGASRWWLHHSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + +  +G    + +      S E L   C     T ++ +R+YE      +K+L +
Sbjct: 60  SALARDIEDQGGKLIFRR----GKSREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHE 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAI 182
            L +  I  K +  ++L  PG+++  +   YKV+TPF +A ++        +  +     
Sbjct: 116 DLGNSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWSTF 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +         + +  +  GE  A   L  F +E V  Y ++RD PA + +
Sbjct: 176 TKSDALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVS 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G LSPRQ W   +++ ++     K     +  E+ WREF  HL+ F+P + 
Sbjct: 236 SRLSPHLHHGELSPRQVWAMCEQKKLETPASEK-AIKKFQAEIGWREFSYHLLHFFPEIP 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F        W  D   L+ W+QG TG+PI+DA MR+L   G MHNR+RM+ ASFL 
Sbjct: 295 E-KAFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVASFLC 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL  WR GE++F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 354 KHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFDKHG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R W+PE+  +P +Y+H P     +        L  +YP PIVDHK+A    L+ Y  
Sbjct: 414 DYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALDAYED 473

Query: 477 AKKQS 481
            K  +
Sbjct: 474 IKGSN 478


>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 474

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 158/484 (32%), Positives = 235/484 (48%), Gaps = 25/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V ++W R DLR+ DN AL AAC     K++ ++I                 +++ SL  
Sbjct: 4   PVSIMWFRQDLRVKDNPALNAACDM--GKIVPIYIFDESAPDGRMPGGASKWWLHHSLKS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
           + K L       Q  +     D    +         + +F+NR YE  ++ RDK + +  
Sbjct: 62  LNKRL---NGHLQIFK----GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPA 181
           L       SF+ S L  P  +L      Y+V+TP+ K     + +          +    
Sbjct: 115 LGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYAD 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +        +            I   +  GE  A   L  F +     Y + RDIP+ +G
Sbjct: 175 VDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP Q W  +K+ F            ++L+EL WREF  +L+  +P++
Sbjct: 235 TSRLSPHLHFGEVSPNQVWYAIKDRF---GTSEDKSIETYLSELGWREFSYYLLFHFPTL 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI  SFL
Sbjct: 292 P-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++FD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R + PELN +  +YIH P             +L  +YP PIVD K +    L+ + 
Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQ 470

Query: 476 AAKK 479
             K+
Sbjct: 471 TLKE 474


>gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride]
          Length = 629

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 170/486 (34%), Positives = 256/486 (52%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR +DN++L  A      +   +I V+I +P+ +  H  S  +  F+  +L  
Sbjct: 138 VHWFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSV 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           ++  L+   I           D    +     +     LF N +YE++E  R  +++ + 
Sbjct: 198 LKDDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQF 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++ +  +   D+ ++PPG + +   + Y VYTP+ +A + ++ +               
Sbjct: 258 AENNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNP 317

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             T       FD P               +    ++P GE  A+  L KFC E V  Y +
Sbjct: 318 GATRRTFKTLFDCPIPDAPKNKQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY
Sbjct: 378 RRNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI+DAAMRQLN +G+MHN
Sbjct: 438 KHVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G D  PYFR+FNP
Sbjct: 498 RCRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  +  + IH P++           YP  IVDHK A    
Sbjct: 558 LLQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERA 617

Query: 471 LNQYYA 476
           L+ Y  
Sbjct: 618 LSAYKD 623


>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
 gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
           CCGE1001]
          Length = 499

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 177/495 (35%), Positives = 255/495 (51%), Gaps = 37/495 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS----AR 56
           +  LVW R DLR TDN ALY A  + + +V  VF+          ++W+          R
Sbjct: 12  NTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQAQDR 70

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  FI  SL ++ ++L  +G          + D  + +     Q +V  +F N  YE   
Sbjct: 71  RVEFILGSLRELDEALRAQGGGLVVL----YGDPADLVPKLADQLQVDAVFINHDYEPAA 126

Query: 117 VRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + RD+ + +RL        +F D V+     +L    + + V+TP++ A ++ L   DL+
Sbjct: 127 IERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTSFDLK 186

Query: 176 SLPVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
             PV        ++          + +    P    +   P G + A  +L  F      
Sbjct: 187 PYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLTRLDS 246

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y  E+RD PA++G S LS +L  G +S R      +      L     GA +WL+ELIWR
Sbjct: 247 YA-ERRDFPAVKGPSYLSVHLRFGTVSIRTL---ARLAHEMSLQPDGRGAATWLSELIWR 302

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNT 345
           +FY  ++A +P +  G  F    +++ W +         AW +G TG+P+IDAAM QLN 
Sbjct: 303 DFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAMLQLNR 362

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAASTG D+ PY
Sbjct: 363 TGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCDAQPY 422

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459
           FRIFNP  Q ++FD  G FI+ +LP+L  +P ++IHAP     +        L  NYP P
Sbjct: 423 FRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAPWLAGAQRLAEFGVALGDNYPAP 482

Query: 460 IVDHKKACHHTLNQY 474
           IVDH +A   TL ++
Sbjct: 483 IVDHAQARARTLARF 497


>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
 gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
          Length = 469

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 205/473 (43%), Positives = 274/473 (57%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185
            + I  S  D   + PPGS+       +KV+TPF++A +               P     
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     +P+  +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 EFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
 gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
          Length = 454

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 152/478 (31%), Positives = 216/478 (45%), Gaps = 28/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   L+W R DLR+ D+ AL  A   +  D  V+ VF+  P  W        +  F+   
Sbjct: 1   MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWG--PSGLPRRQFLLDC 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +       G            D    L     +     +  +         RD  +E
Sbjct: 59  LADL-------GAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVE 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L    + ++     + P G +       ++V++PF +A  ++  +        P    
Sbjct: 112 RALGDVPLVRTGSPYAVTP-GRVTKSDGTPFRVFSPFARAWREHGWRDP-----APRPDA 165

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               T        + P      + P GE  A    R+F  E++  Y   R+ P   GTS+
Sbjct: 166 VPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNTPGSDGTSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  G + PR     L++   D        A S+ NEL WR+FY  ++   P     
Sbjct: 226 LSAYLKYGCVHPRTLLADLEDLDSD-------SADSFRNELAWRDFYADVLWHRPESARE 278

Query: 305 KPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                                 AW +G TG+PI+DA MRQL    ++HNR+RMI ASFLV
Sbjct: 279 PLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRVRMIIASFLV 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDWR G  YFM  L+DGDLASNN GWQW A TG D+ PY+R+FNPT QG+ FDP G
Sbjct: 339 KDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTRQGREFDPDG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++R W+PEL +VP +++H P    D   +   YPLPIVDH +     L +Y   + +
Sbjct: 399 DYVRRWVPELRDVPARHVHEPWLAPD--GVPDGYPLPIVDHAEERRVALERYEQVRDR 454


>gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
 gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
          Length = 486

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/493 (29%), Positives = 234/493 (47%), Gaps = 23/493 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A    +  +VW R+DLR+ DN+AL AA  ++   ++ V+I          +      +
Sbjct: 1   MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + + ++ KG            ++   L +         + + R+Y   E+  D
Sbjct: 60  LHHSLQALGQDIAAKGGRLDLF----CGEARRILPALAEAAGARIICWTRRYGGPEMAVD 115

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADL 174
             L+ + +   +  KSF+  +L  P  I       + VYTP+ +A          + A  
Sbjct: 116 AALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPD 175

Query: 175 RSLPVPAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           R    P  R    T  +    +          +   +  GE  A   L+ F + ++  Y 
Sbjct: 176 RLPAAPIPRGALRTTSIEALALLPEKPDWAGGLRAAWRPGENGAQERLKAFLEGEIASYS 235

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +R+ P+    S+LSP+L  G + PRQ +  ++  + +     + G   +L EL WREF 
Sbjct: 236 LERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAA---QKGGVKFLAELGWREFN 292

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            HL  ++P          + +          L AW++G TG+P+IDA MR+L   G+MHN
Sbjct: 293 YHLSFYHPDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYMHN 352

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+ ASFL+K LL+DWRIGE +F   L D D A+N   WQW A +G D+ PYFRIFNP
Sbjct: 353 RVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIFNP 412

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465
            +QG++FD  G ++R W+PEL  +P ++IH P +           +L  NYP PIVD  +
Sbjct: 413 VLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAE 472

Query: 466 ACHHTLNQYYAAK 478
                L  +   K
Sbjct: 473 GRARALAAFEKVK 485


>gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio furnissii NCTC 11218]
          Length = 475

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 211/473 (44%), Positives = 275/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+   +   Y +   F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185
            + I    FDD  ++PPGS+ N     +KV+TPF++A +       +++     P     
Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +            +     +P+        LR FC+E++  Y +QRD PA  GTS L
Sbjct: 180 ALQSLLWCESQPFTHPRVSSDAWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQDGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  R+  E     +    GA +WL+ELIWREFY+HL+ F P +   K
Sbjct: 240 SPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLSELIWREFYQHLLTFEPKLSKSK 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG++FDPQG FI
Sbjct: 358 HIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  VP  +IHAP +W   N L   YP PIVDHK     TL  Y  AK
Sbjct: 418 RQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468


>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
 gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
          Length = 484

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 173/484 (35%), Positives = 250/484 (51%), Gaps = 18/484 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ D+ AL+AA    D  +I V+I          +  ++ H  ++++  +
Sbjct: 2   TAIVWFRRDLRLHDHAALHAAMLTGD-PIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
             +L Q G      +     +  + L     +    KLF+NR Y  +  +RD+L+ + L 
Sbjct: 61  DDALVQLGGRLLIRR----GEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLS 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-----PVPAI 182
           +H V   +  D VL  PG I+      Y V+TP+R+                        
Sbjct: 117 RHGVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPTEWILFDRLK 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            L     P+      + P      M   GE+ A   L++F    +Y Y E+RD+P +  T
Sbjct: 177 ELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKRDMPGVNAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L+ G LS R  ++R++E       +  +   ++L ELIWREFY+ ++ F+P   
Sbjct: 237 SRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQVLYFHPH-T 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               ++P  E++ W     L   W QG TG+PI+DAAM+QLN  GWMHNRLRMITASFL 
Sbjct: 296 TNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRLRMITASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLLVDWR G  YF  QL+D D A+N GGWQW+ASTG D+ PYFRIFNP  QG++FD  G
Sbjct: 356 KDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDRDG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            F++ +LP L  VP QYIH P    +         +  +YPLP VDH +     +  +  
Sbjct: 416 VFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRRKLAMALFQE 475

Query: 477 AKKQ 480
           AK +
Sbjct: 476 AKDR 479


>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
 gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
          Length = 499

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/483 (33%), Positives = 236/483 (48%), Gaps = 19/483 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ DN AL+AA   S   ++  FI  P+   Q         +++ SL  + +
Sbjct: 11  LVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSR 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+ Q+G      +     D+   L   C +   +++F+NR         D  L  RL  R
Sbjct: 70  SIRQRGGQLVLRR----GDTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADR 125

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185
            +  + F    L  P + LN + + Y+V+TPF KA ++             LP  A+  +
Sbjct: 126 GVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLRAPEPSAALPAPDRLPGAAVTAS 185

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++              +  GE  AL+ L  F   ++  Y + RD P   GTS+L
Sbjct: 186 DNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTSRL 245

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L+ G +SPR  W+ +++           G   +L+EL WR+F  +L   + S    +
Sbjct: 246 SPHLAWGEISPRTIWHTVRDHAERGGSFQ--GGEKFLSELGWRDFAIYLAHHFGS-LRDE 302

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    +   W  +   L AWK+G TG PI+DA MRQL T GWMHNR+RMITASFL+K L
Sbjct: 303 NFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITASFLIKHL 362

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V WR G  +F   L+D DL  N   WQW A +G D+ PYFRIFNP  QG+RFDPQG ++
Sbjct: 363 GVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFDPQGLYV 422

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             W+PEL  +  + +HAP +            L   YP P+ D K      L+ Y   K 
Sbjct: 423 HRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGREQALDAYQTMKA 482

Query: 480 QSL 482
           ++ 
Sbjct: 483 RAA 485


>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
 gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
          Length = 481

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 235/479 (49%), Gaps = 18/479 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R  LR++D+ AL+AA   S A VI  ++   E      +      ++  SL  +Q 
Sbjct: 7   VVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSLRALQD 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+     +      S + +     +   + +++N   +         +E  L   
Sbjct: 66  ELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAI 121

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRLT 185
            +  + F D +L+ P  +     +  +V+TPF K ++          +PV    P+   +
Sbjct: 122 GVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALGDPPKPLPVPVRLSSPSGVAS 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             V    +          +   +  GE+ A   L KF +  V  Y   RD P I+ TS+L
Sbjct: 182 LTVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPDIEATSRL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SPRQ W+  +    +       G   +L+EL WREF RHL+   P +    
Sbjct: 242 SPHLRFGEISPRQIWHAARFA-AEQQPAFARGIDKFLSELGWREFSRHLLFNNPDLATRN 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P  +   W++D+  L+AW++G TG+PI+DA MR+L   G MHNR+RM+ AS LVK L
Sbjct: 301 -LQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG++FD  GT++
Sbjct: 360 LIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDSSGTYV 419

Query: 426 RHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  +P   IH P +            L  +YP P+VDH+      L  Y + +
Sbjct: 420 RRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALAAYASLR 478


>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
 gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB5]
          Length = 487

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 139/498 (27%), Positives = 221/498 (44%), Gaps = 29/498 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55
           M   T   V +VW R+DLR++D+ AL+ A   S   +I +++   +  +        +  
Sbjct: 1   MPNNTPRPV-IVWFRDDLRLSDHPALHQAA-ASGGPLICIYVFDEDSAQLRSPQARPLGG 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
               ++  SL  +  SL ++G      +      +   +     Q   + + +N      
Sbjct: 59  ASRWWLAQSLRALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWNEIEIAP 114

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
                  L + L    I        LL   + +                 +  L      
Sbjct: 115 HRAVADDLAEALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLGDPPKL 174

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------Y 228
              +PA +        +  +   +  +  +P +  G + +        ++ +        
Sbjct: 175 ---LPAPKTLSAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTPGEGAAQDNLTAFLDALP 231

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y E RD P    TS+LSP+L  G +SPRQ W   +    +           +L+EL WR
Sbjct: 232 GYTEGRDRPDCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIAG-DIDKFLSELGWR 290

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF RHL+  +P +          +   W  D+  L AW++G TG+PI+DA MR+L   G 
Sbjct: 291 EFCRHLLHDHPDLAERN-LQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGV 349

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+ ASFLVK LL+DWR GE++F   L+D D  SN   WQW A +G D+ PYFR+
Sbjct: 350 MHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRV 409

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           FNP +QG++FDP G ++R W+PEL ++P ++IH P +            L  NYP PI+D
Sbjct: 410 FNPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIID 469

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H+      L  Y   ++ 
Sbjct: 470 HRVGRERALAAYAKTRQH 487


>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
 gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
          Length = 469

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 275/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +               P     
Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWNVPN 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     +P+  +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 EFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSIL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E     +    GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRESEMSALSE--GAQVWLSELIWREFYQHLVAIEPNISKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468


>gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 471

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 213/476 (44%), Positives = 274/476 (57%), Gaps = 13/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLR DLRI DN AL  A    +  V+ ++ ATPE W +HG++  Q+  IY  L  +
Sbjct: 1   MNLVWLRRDLRIEDNSALVNAVETGE-PVVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   Y +   + +S + +          ++  N++YE+NE RRD  LE  L 
Sbjct: 60  KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182
              I  KS DD  +  PGSI+N     +KV+TPF+KA +  L +        +      +
Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQVRKPQVACSSRL 179

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                         F YP +  D       Q+ +  LR F  + V  Y   RD PAI GT
Sbjct: 180 PEHLSSLLFADDVTFSYPREPSDQFA-ADTQSIIQTLRDFDSQDVEGYASNRDFPAIAGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LS RQC  RL             G   W +ELIWREFY+HL+ F   + 
Sbjct: 239 SQLSPYLAIGALSVRQCMARL---MFGQAPPLSQGREVWQSELIWREFYQHLIYFEAKLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F+ W +++ W  +   ++AWKQG TGFPI+DAAM+QLN  GWMHNRLRMI ASFLV
Sbjct: 296 KGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMIVASFLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDPQG
Sbjct: 356 KDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPQG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F+R WLPEL  VP +Y+H P  W     LS  YP PIVDHK     TL  Y  AK
Sbjct: 416 EFVRQWLPELAQVPDKYLHQPWKWSGVRSLS--YPPPIVDHKVEREVTLRLYKEAK 469


>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
 gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
          Length = 477

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 196/475 (41%), Positives = 271/475 (57%), Gaps = 7/475 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLRI DN AL  A   S    IA+++ TP QW++H  +  +  F   +L  + 
Sbjct: 3   QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+   +     QC +++ +   +   C Q  V  +  N +Y INE  RD+ +   L  
Sbjct: 61  RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I        L   PGSIL  +   ++VY+ FRK   ++L  A    +  P  +   P+
Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180

Query: 189 TPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               IP     F  P + +  ++P GE+ A   L +F  E++ YY ++RD PA+ GTSQL
Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSPRQC +              +G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W +    L AW+QG TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FD +G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLPEL  +  + IH P S L        YP PIVD  ++    L  +    ++
Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAFRNLGQE 474


>gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B]
 gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis
           SB2B]
          Length = 475

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 196/478 (41%), Positives = 268/478 (56%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+  LVW R DLR  DN+AL  AC +++    KV A+FIA+P QW++H +  RQ  F+ A
Sbjct: 1   MNT-LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLA 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDK 121
           +L  + + L+  GI     +   F  +   L ++C +  ++ +F     + +     +  
Sbjct: 60  NLNALGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQAL 119

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L +                 +      +    MY+V+TPF +   +      L  +P PA
Sbjct: 120 LDKGFPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              T PV  +    + D         +P+G+  AL  L +F +  +  Y E RD PAI G
Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL++GV+SPRQC   L E+F D+ +   S A  WLNEL+WREFYRHL+  +P +
Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K F P  + I W  D    +AWK G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP+
Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR +LPEL   PT+ +H   +       S  YP PIV+H +A    L+     KK
Sbjct: 419 GRFIRKYLPELAQWPTRSLHQ--ASGPGLFDSSGYPSPIVEHTQARVRALDVMAVMKK 474


>gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
 gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
          Length = 475

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 217/477 (45%), Positives = 287/477 (60%), Gaps = 11/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VWLR DLR+ DN AL  A   S   V AV+IATP+ W++H ++  Q+  I+  LL +
Sbjct: 1   MKIVWLRRDLRVDDNTALVEAV-MSGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ LS K I   Y +   + D+ + L     Q     +++N QYE++E++RD+ L  +L 
Sbjct: 60  KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----R 183
              I C  FDD  +L PGS++N   + YKV+TPF++A  Q L Q  +    V  +     
Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L+        P+      +     + +  +N +  LR F  EKV  Y  QRD P ++GTS
Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYFVDTKNIIQKLRDFESEKVDAYALQRDFPEMEGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+IG LS RQC   L     +       G   WL+EL+WREFY+HL+ F P +  
Sbjct: 240 QLSPYLAIGALSVRQC---LIRLLCNNPPPIAGGREVWLSELVWREFYQHLIYFEPKLSK 296

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G  F  W + + W  +   ++AWK G TG+PI+DAAM QLN  GWMHNRLRMI ASFLVK
Sbjct: 297 GHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVASFLVK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D  PYFR+FNPT QG++FD + +
Sbjct: 357 DLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFDSEAS 416

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL  VP +YIH P  W +   LS  YP PIVDHK     TL  Y  AK+ 
Sbjct: 417 FIRSWLPELEEVPDRYIHKPWCWPNAKSLS--YPTPIVDHKAEREITLALYKDAKEN 471


>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 482

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 241/482 (50%), Gaps = 19/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W RNDLR+ D+ AL AA H   A ++ ++I      +Q  +      ++  SL  +  
Sbjct: 7   VLWFRNDLRLGDHAALVAAVHTG-APILPLYILDDASPKQWKMGGASHWWLDKSLAALAG 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G      +     DS   L     +     +++ R YE   V  ++ L+ +L   
Sbjct: 66  DLASRGGPLVLRR----GDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKLDDA 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRL 184
            + C+ F   +L  P  +       YKVYTPF +A++++LV A       R   +     
Sbjct: 122 NVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEKQPK 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +        +     +  GE  A   L  F +  +  Y   R+ PA  GTS+
Sbjct: 182 SERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSR 241

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G +SP                   + A ++L EL+WREF   L+  +P +   
Sbjct: 242 LSPHLAFGEISPAA-CWHAAAHAGGKTNGSDNAAETFLKELLWREFSAGLLFHFPELPE- 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P      W+ ++  L+AW+ G TG+PI+DA MR+L   G+MHNR+RMITASFL+K 
Sbjct: 300 EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKH 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++FDP G +
Sbjct: 360 LLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDGDY 419

Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  +P Q IHAP              L  +YP PIV+H +A    L  Y   K
Sbjct: 420 VRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARARALAGYEHIK 479

Query: 479 KQ 480
             
Sbjct: 480 NS 481


>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
 gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
          Length = 472

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 246/480 (51%), Gaps = 24/480 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RNDLR+ DN AL AA   S A +IA+++   E   +  + +    +++ SL  + 
Sbjct: 5   AVVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALA 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L++ G+     +      +   L++         +++NR YE   +RRD  ++ +L+ 
Sbjct: 64  HDLARLGVTLTLRR----GRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRL 184
           R +     +  L   PG + N   + ++V+TPF +A +            + L       
Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPAPKKLTAAPPPA 179

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +          +   +  GE  AL  L +F K++V  Y   RD  A +G S+
Sbjct: 180 SDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMAREGVSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +SP+L  G +SPR+ W  + E   D           +L E+ WREF  HL+   P +   
Sbjct: 240 MSPHLHFGEVSPRRIWAEITEAAGDAGAA-------YLREIGWREFCHHLLVANPQMPE- 291

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +          W +D+  L+AW++G TG+P++DAAMR+L   G MHNR RM+ ASFLVK 
Sbjct: 292 RALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAASFLVKH 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ GE +F   L+D DLA+N+GGWQW A  G D+ PYFR+FNP +QG++FDP+G +
Sbjct: 352 LLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGDY 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PEL  +  ++IH P    ++        L   YP PIVDH KA    L  + A +
Sbjct: 412 LRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRALKAFEATR 471


>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
 gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
          Length = 469

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 203/473 (42%), Positives = 275/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A  + +  V AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +               P     
Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVSN 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     +P+  +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 EFSHLVWHTDQIFDYTRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
 gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
          Length = 499

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 177/494 (35%), Positives = 252/494 (51%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVW R DLR TDN ALY A  + + +V  VF+            W+          R+
Sbjct: 13  TGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGTQAQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI ASL ++ ++L  +G          + D ++ +     +  V  +F N  YE   +
Sbjct: 72  VEFILASLHELDEALRARGGGLVVL----YGDPVDLVPKLAAELEVDAVFANHDYEPAAI 127

Query: 118 RRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + +RL       ++F D V+     +L    + + V+TP++ A ++ L   DL+ 
Sbjct: 128 ERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFDLKP 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV          P  + R           P    +   P G   A  +L  F      Y
Sbjct: 188 FPVETYANRLAPLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLDDFLSRIDSY 247

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             E+RD PA +G S LS +L  G +S R      +      L     GA +WL+EL+WR+
Sbjct: 248 A-ERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAHEMSLQPDGRGAATWLSELVWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW +G TG+P+IDAAM QLN  
Sbjct: 304 FYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLIDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P ++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAGAQRLAEYGVMLGEDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAQARARTLARF 497


>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
 gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
          Length = 472

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 173/479 (36%), Positives = 256/479 (53%), Gaps = 21/479 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  +++ SL 
Sbjct: 1   MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLS 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE R
Sbjct: 56  SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183
           L    + + +  ++L  P  I N +   YK++TPF K +  +L                 
Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +         +      +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      K+    +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGR 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y  
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYKD 467


>gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 475

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 208/475 (43%), Positives = 285/475 (60%), Gaps = 11/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLRI DN+AL +A   S+  V+A++IATPE W++HG++  Q+  I   L+ +
Sbjct: 1   MKLVWLRRDLRIEDNRALCSAIE-SEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+   +   Y Q   +  + + +        +  +++N++YE +E  RD  L++ L 
Sbjct: 60  QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----R 183
           H  I   SFDD   L PGS+LN     +KV+TPF++A +    Q  +  +    I    +
Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L G                     +P+   + ++ LR F   +   Y + RDIP+I+GTS
Sbjct: 180 LHGEQAQLFSDNSSFDYPTESSATYPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+IG LS RQC  RL ++    L     G   W++ELIWREFY+HL+ F   +  
Sbjct: 240 RLSPYLAIGALSVRQCMARLHDQHPKPL---PPGREMWMSELIWREFYQHLIYFESKLSK 296

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           GK F+ W +++ W   S  + AWK+G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL+K
Sbjct: 297 GKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLIK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP G 
Sbjct: 357 DLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDGE 416

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           F+  W+PEL  VP ++IH P  W    +LS  YP PIVDHK     TL+ Y  AK
Sbjct: 417 FVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469


>gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
          Length = 463

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 209/468 (44%), Positives = 288/468 (61%), Gaps = 6/468 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLRNDLR+ DN ALYAAC +  A V AV+IATP+QW QH  SA +  F  A+L  +
Sbjct: 1   MKLVWLRNDLRLDDNPALYAAC-HGTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L++ GI F+  Q S F D  + L  YC +  VT L++NR++ ++E  RD  + +RL 
Sbjct: 60  KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I     ++ LL    I N   Q YKV+TP+ KA ++ L   D   L  P    +   
Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +P+N            D ++P  EQ+AL  L +FC+ ++++Y + RD PAI GTS LSPY
Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G++SPR+C   +++   +     +  A  WL EL WREFYR+LM  +P +  GKPF 
Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++  W ++  LL AW+ G TGFPIIDAAMRQL +  WMHNRLRM+ ASFL K +L+D
Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM QL+DGD  SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR +
Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           LPEL  +  + IH P + L +    L YP PI+D+K A    ++    
Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTARERAISALNK 462


>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
 gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
          Length = 469

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 203/473 (42%), Positives = 274/473 (57%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++A P+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +               P     
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     +P+  +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 EFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468


>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
 gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
          Length = 469

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 169/476 (35%), Positives = 242/476 (50%), Gaps = 19/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+ D  AL+AA     A VI VFI  P++  Q    A  + +++ SL  + +
Sbjct: 6   LVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQSLNE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++ G             S++ L     +   T +++NR YE   V RD+ ++  L+  
Sbjct: 65  ALNKAGSPLVVRAGP----SLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRAD 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185
            +     ++ L + P  +       Y+V+TPF +A +Q  ++         LP P     
Sbjct: 121 GLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQNPLPAPSRLPAPGKPPR 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +               +   +  GE+ A   L +F ++ +  Y + RD P   GTS+L
Sbjct: 181 SLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGTSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SPRQ    L++  V L      G  S++ EL WR+F  H++  +P     +
Sbjct: 241 SPHLHFGEVSPRQVLRALRDAGVSL---DHKGPESFVRELGWRDFAHHVLYHFPH-TTEQ 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P  P  E   W +    L AW+QG TG PI+DAAMRQL   GWMHNRLRM+  SFL K+L
Sbjct: 297 PLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLTKNL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G  +F   L+D DLASN  GWQWA   G D+ PYFRIFNP  QG+++DP G F+
Sbjct: 357 RLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDGRFV 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R +LP L    T+YIHAP         +  YP PIVD K +    L  + A KK S
Sbjct: 417 RSFLPVLKKTETRYIHAP-----GAGGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467


>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
 gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
          Length = 484

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 197/476 (41%), Positives = 275/476 (57%), Gaps = 9/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLRI DN AL AAC       +A++IA+P QW++H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRIDDNTALSAACQ--GGPAVALWIASPGQWQRHDDAACKVDFWLRNLRLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            ++L    I         + +  + L   C + ++  + +N +Y +NE  RD      L+
Sbjct: 59  SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   +  D +L  PGS+L    Q ++V++ F++  +++L ++       P  +    
Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLPARAQRPKRQAPLD 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P Q++   +P GE+ A   L +F  E V  Y + RD+PA  GTSQ
Sbjct: 179 IASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKAGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP+GTF
Sbjct: 359 LLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDPKGTF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR WLPEL  +  + IH P    D    N+ S NY  PIVD   +    L+ +   
Sbjct: 419 IRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAFKGL 474


>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
 gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
          Length = 493

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 170/491 (34%), Positives = 243/491 (49%), Gaps = 21/491 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R DLR  D+ ALY A      +V  VF+           + R+  FI  SL+Q
Sbjct: 6   SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLVQ 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL                 + E + +   +  V  +F N   E   + RD  + +RL
Sbjct: 65  LDASLRALSGHRHGGLIVRHGVAAEEVPALAARLGVQAVFANHDDEPVALERDDRVRRRL 124

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180
               +   ++ D  +     +L      Y V+TP++ A ++ +    L + PV       
Sbjct: 125 GTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 184

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A R  G            +    +D +      +    L     +++  Y E RD PA++
Sbjct: 185 APRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFLQRIDQYGEARDFPAVK 244

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS +L  G LSPR+      E           GA +WLNELIWR+FY  ++A +P 
Sbjct: 245 GPSYLSVHLRFGTLSPRRAARAAHERMRQGST----GAATWLNELIWRDFYFQVLAHHPQ 300

Query: 301 VCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V  G  F P  +     +  +      AW +G TG+P++DAAM Q+N  G+MHNRLRM+ 
Sbjct: 301 VAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMVV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++
Sbjct: 361 ASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRK 420

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471
           FDP+G FIR +LP+L  +P +++HAP              L  NYP P+VDH +A   TL
Sbjct: 421 FDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRTL 480

Query: 472 NQYYAAKKQSL 482
            +Y   K ++ 
Sbjct: 481 ARYAVVKSEAA 491


>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
 gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
          Length = 478

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 162/485 (33%), Positives = 241/485 (49%), Gaps = 25/485 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYAS 64
           M+  LVW R DLRI DN AL+ A  +   +V+ VFI  P       H +      +++ S
Sbjct: 1   MTT-LVWFRQDLRIKDNPALFEAAKS--GRVLPVFILEPADKTGETHPLGGASRWWLHHS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q+ L   G+V          D+   +     +  V  +F+NR YE   + RD  L+
Sbjct: 58  LKALQQDLP--GLVLL------KGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLK 109

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180
             L+      KSF  S+L  P  I   +   YKVY+PF KA  Q  +         L + 
Sbjct: 110 SSLKDDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDDALPAPEKLDIA 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  +   ++        +  + ++  GE  A   L  F +E +  Y + R+ P + 
Sbjct: 170 DYDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDLP 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSP+L  G +SPRQ W+  ++           G     +E+ WREF  +L+  +P 
Sbjct: 230 NVSRLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDGMKFL-SEIAWREFSHNLLYHFPK 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +          ++  W +    L+ W++G TG+PI+DA MR+L   G+MHNR+RMI ASF
Sbjct: 289 LPSENW-RSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+K L + WR GE +F   L+D DLA+N+ GWQW A +G D+ PYFR+FNP  QG++FDP
Sbjct: 348 LIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL  + T+Y+ AP     +        L   YP P+VDH  A    L  Y
Sbjct: 408 DGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALEGY 467

Query: 475 YAAKK 479
            A K+
Sbjct: 468 EAVKQ 472


>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
 gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
          Length = 504

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 165/495 (33%), Positives = 245/495 (49%), Gaps = 26/495 (5%)

Query: 7   MSVHL-----VWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58
           MS  +     VW RNDLR+ DN AL AA   +      VI ++I   E      +   Q 
Sbjct: 12  MSTAIAPPIIVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQR 71

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +++ SL ++    ++ G      +     +    LD+   +     + +NR+Y   +  
Sbjct: 72  WWLHGSLERLATCCARHGSPLVLRR----GEPAAVLDALIAETGAGCVLWNRRYAPAQTA 127

Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  +++ L+ R I  +SF+  +L  P ++ N +   +KV+TPF + L   L        
Sbjct: 128 RDAAIKQGLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRA 187

Query: 178 PVPAIRLT-----GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           P              +    +P         +   +  GE  AL  L  F    V  Y  
Sbjct: 188 PAALKAPATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVGVYAT 247

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD P   GTS LSP+L+ G + PRQ W        +   +  +G   +L E+ WREF  
Sbjct: 248 ERDRPDRHGTSTLSPHLAFGEIGPRQVW-HAARHAAEARPELAAGIDFFLREVGWREFQY 306

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+   P +   +P  P      W +D+  LQAW++G TG+PI+DA MRQL   GWMHNR
Sbjct: 307 HLLHHAPELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNR 365

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFLVKDLL+ W+ GE +F   L+D DLA N G WQW A  G D+ P+FR+FNP 
Sbjct: 366 VRMIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPV 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           +QG++FDP G ++R ++PEL+ +P ++IH P +            L  +YP PI+DH  A
Sbjct: 426 LQGEKFDPDGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILDHGAA 485

Query: 467 CHHTLNQYYAAKKQS 481
               L  Y   K ++
Sbjct: 486 RDRALALYNERKAKA 500


>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
 gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
          Length = 475

 Score =  319 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 211/473 (44%), Positives = 276/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+   +   Y + + F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185
            + I    FDD  ++PPGS+ N     +KV+TPF++A +       +++     P     
Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +            +     +P+        LR FC+E++  Y +QRD PA  GTS L
Sbjct: 180 ALQSLLWCEAQPFTHPRVSSDAWPVDFDTIRRRLRAFCQEQLDDYKQQRDFPAQDGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  R+  E     +    GA +WL+ELIWREFY+HL+ F P +   K
Sbjct: 240 SPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLSELIWREFYQHLLTFEPKLSKSK 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG++FDPQG FI
Sbjct: 358 HIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  VP  +IHAP +W   N L   YP PIVDHK     TL  Y  AK
Sbjct: 418 RQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468


>gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 484

 Score =  319 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 173/495 (34%), Positives = 251/495 (50%), Gaps = 34/495 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65
           MS  LVW R DLR  D+ AL+ A   ++ +V   F+            + R+  FI+ASL
Sbjct: 1   MSSALVWFRRDLRSFDHAALHHALRFAE-RVHCAFVFDTAILDALPARADRRVEFIHASL 59

Query: 66  LQVQKSLSQKGIV-------FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            ++  +L                        + + +     +  V K+F NR YE + + 
Sbjct: 60  AELDAALDAMARAAGGTGGGLIVRH----GRAEDEIPRLAAELGVDKVFANRDYEPDAIL 115

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  + +RL    I  + F D V+     +L    + Y V+TP++ A ++ +  + + S 
Sbjct: 116 RDSRVAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQVSSH 175

Query: 178 PVPA-----IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            V              T   +      P    +   P+G       L      ++  Y  
Sbjct: 176 AVEKYAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGG-KRLFDDFAARIERYKR 234

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G +S RQ     +    +       GA +WL+ELIWR+FY 
Sbjct: 235 ARDFPAVKGVSYLSTHLRFGTVSIRQLAAHARARGGE-------GAETWLSELIWRDFYH 287

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  +P V   + F P  + ++W+    L  AW +  TG+PI+DAAMRQL+  GWMHNR
Sbjct: 288 QILWHHPQVVD-RAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDL VDWR+GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP 
Sbjct: 347 LRMIVASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPV 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
            Q ++FDP+G FIR +LPEL  VP ++IHAP +         +  + ++YP PIVDH  A
Sbjct: 407 TQSEKFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVDHAAA 466

Query: 467 CHHTLNQYYAAKKQS 481
              TL ++   K  +
Sbjct: 467 RERTLQRFGVVKNDA 481


>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
 gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
          Length = 490

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 165/492 (33%), Positives = 245/492 (49%), Gaps = 21/492 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  SL ++
Sbjct: 1   MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +     Q    +      + + +   Q     +F N   E   + RD  + + L+
Sbjct: 60  DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P      +  
Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +  R        +                +    L      ++  Y   RD PA++
Sbjct: 180 ADLPDSERRPIPTAADLGFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPALK 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+FY  ++A  
Sbjct: 240 GPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAHQ 299

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P   + + F P  + IEW   +       AW +G TG+P++DAAMRQLN+ G+MHNRLRM
Sbjct: 300 P-YVVERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 359 VTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHH 469
           ++FDP G FI  ++PE+  +P++  HAP              L  +YPLP+VDH  A   
Sbjct: 419 EKFDPDGKFIARYVPEVAQLPSKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAAREK 478

Query: 470 TLNQYYAAKKQS 481
           TL +Y   KK++
Sbjct: 479 TLARYGILKKEA 490


>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
 gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
          Length = 471

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 165/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +        E +     Q  V  +++NR YE     RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRK----GSPQEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLA 112

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  R I  +SF+ ++L  P +I N     +KV+TP+ K   Q  N+    + +     I 
Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQILNIPSPLMLTKRPRGIE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T                      +  GE+ A   L +F    +  Y   RD PA   TS
Sbjct: 173 ITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPW-VILRALELTKLEQTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W  D  LL  W++G TG+P+IDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 CENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +    + +     YP PI++H++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDASASSIFLGNKYPKPIINHQEARTKALSYYQQIKK 468


>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 471

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L   
Sbjct: 62  ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            I  + F D  +  P ++LN   + +KV+TPF++A +               P+    L 
Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKVLE 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +      F     +     +     + L  LR+F +E+   Y  +RD PAI GTSQL
Sbjct: 182 QLESARFNSSFTFSYPRESSEDWLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471


>gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 480

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 187/479 (39%), Positives = 266/479 (55%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A        I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHASQQ--GPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++    +Q  +  ++ N ++ +NE++RDK ++  L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123

Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180
           +      F D  + P  SI N + Q Y+V+  F+KA    L             +    P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           A               F  P  + +    +P GE  AL  L  F K+ +  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+W+ +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K++L+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480


>gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +   + L         W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 238/495 (48%), Gaps = 34/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR+TD+ ALY A   S  +V  VF+   +             R+  F+ AS+
Sbjct: 7   SLVWFRRDLRMTDHAALYYALSQS-RQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++ ++L   G             ++  + +   +  V  ++ N  YE   V RD  + +
Sbjct: 66  AELDEALRHAGGGLIVLH----GSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQ 121

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L        S+ D V+     +L  + + + V+TP++ A +  L  AD      P    
Sbjct: 122 TLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVE 181

Query: 185 TGPVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                 ++ P    +           P    +   P G   A  +L     +++  Y   
Sbjct: 182 KYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLD-EFLDRIGSYGAA 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA++G S LS +L  G +S R       +          +    WL+EL WR+FY  
Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGA--AVWLSELTWRDFYFM 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++  +P V     F P  + I+W +         AW +G TG+P++DAAM Q+N  G+MH
Sbjct: 299 ILHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMH 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWA+S+G D+ PYFRIFN
Sbjct: 358 NRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFN 417

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P  Q ++FDP G FIR +LP+L  +  + IHAP +            L  NYP PIVDH 
Sbjct: 418 PVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHA 477

Query: 465 KACHHTLNQYYAAKK 479
           +A   TL +Y   KK
Sbjct: 478 QARERTLARYAVVKK 492


>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
 gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
          Length = 479

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 158/481 (32%), Positives = 226/481 (46%), Gaps = 24/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++DN AL AA       VI V+I          +   Q  +++ SL  +  
Sbjct: 9   IVWFRKDLRLSDNLALLAAVE-HGGPVIPVYIREKS---AGPLGGAQEWWLHHSLAALSS 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G            D+   L     +     + +NR+Y+   +  DK L+++L+  
Sbjct: 65  SLEKAGGRLVL----ASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDD 120

Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            +        LL   S L   +   Y+VYTPF +AL                        
Sbjct: 121 GLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWPK 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  ++   +        +    ++  GE  AL  L  F    +  Y E RD PA   TS 
Sbjct: 181 SEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKPATSL 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G +SP   W+  K     +          +  E++WREF  HL+  +P +   
Sbjct: 241 LSPHLAAGEISPAAVWHATKGLSRHIASN---DISRFRKEIVWREFCYHLLFHFPELGEK 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W  D    +AW +G TG+PI+DA MRQL   G MHNR+RMI ASFL+K 
Sbjct: 298 NW-NDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKH 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++F   L+D D ASN   WQW A +G D+ P+FRIFNP +QG++FD  G +
Sbjct: 357 LLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDY 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PEL  +  +YIH P             +L   YPLPIVDH KA    L  Y A K
Sbjct: 417 VRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERALAAYAAVK 476

Query: 479 K 479
           K
Sbjct: 477 K 477


>gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4]
 gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4]
          Length = 478

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 201/482 (41%), Positives = 273/482 (56%), Gaps = 19/482 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  L+WLR D R+ DN AL  A      +  A+FIATP QW+QH ++  ++  I   L 
Sbjct: 1   MS-ALLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLE 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L++ GI       ++F D +  L  YC    V  L  N + E++E  RDK +   
Sbjct: 58  LMAGELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAA 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185
               +  + + +  +LPPGS+LN   +M+KV+TPF+KA ++ +    +  +P PA     
Sbjct: 118 ---GIDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPV 174

Query: 186 ------------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                                             +P  EQ    +L  F ++K+  Y E+
Sbjct: 175 KSIGDAQAASQLPQQPTPQSSSINLDYPLVDSGRWPDSEQVMGQLLPHFWQDKLLNYGER 234

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PAI+GTS LSPYL+IG +S R    +L +   +++   + GAF+WLNELIWR+FY+H
Sbjct: 235 RDFPAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKH 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  YP +  G  F P  E + W  +    QAW +G TG+PI+DAAM+QL   GWMHNRL
Sbjct: 295 LLFHYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRL 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL K LLVDW  GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP  
Sbjct: 355 RMIVASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPIT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FDP+G FIR +LPEL  VP + IH PH +L     +  YP PIVDHK A    L  
Sbjct: 415 QSQKFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAF 474

Query: 474 YY 475
           Y 
Sbjct: 475 YK 476


>gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
          Length = 482

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 163/479 (34%), Positives = 240/479 (50%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A Q+ +++ SL  +  
Sbjct: 10  ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLHHSLEALDG 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++             +++E L S   Q     +F+NR+Y+   +  D  +E  L+ R
Sbjct: 69  SLRKRRGGL----SLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISIDARIEHELEKR 124

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185
            I        LL   S L   +   Y+VYTPF +AL        +    +      +  +
Sbjct: 125 AIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEAEPLDIPSKLQLASKLPGS 184

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +             +   GE+ A   LR F ++++  Y E RD PA   TS L
Sbjct: 185 EKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSML 244

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L++G +SP + W+  +         P +    +  E+ WREF  HL+A +P +    
Sbjct: 245 SPHLALGEISPARIWDATRGL---SKHVPAADIVHFRKEIAWREFSYHLLAHFPRLATAN 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +  EW +     +AW +G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KDL
Sbjct: 302 W-DDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           +VDWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG++FDP G F+
Sbjct: 361 MVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDGDFV 420

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R  +PEL  +  +YIH P              L   YP P+VDH  A    L  Y A +
Sbjct: 421 RAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 479


>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
 gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
          Length = 471

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T +  N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            +   +F D  +  P ++LN   + +KV+TPF++A +Q      V    +   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQKQNELPSEQLA 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     F     +     +     + L  LR F +E+   Y  +RD PAI GTSQL
Sbjct: 182 AVKQDGFDADFTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  G+
Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP ++IH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKFIHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
          Length = 471

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  +  
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYLND 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L    + F Y +  +F D  E +  +      T +  N  YE+NE   D  + + L   
Sbjct: 62  ELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALASH 121

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            I    F D  + PP ++LN   + +KV+TPF++A +               P+ +  L 
Sbjct: 122 DIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQFQMPAVTKPQEQAPLSSKLLE 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     F     +     +     + L  LR+F +E+   Y E+RD PAI GTSQL
Sbjct: 182 QLEPIRFSSDFTFSYPRESSEDWFASTNDVLKQLREFARERSDAYKEERDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLRLFKSAKE 471


>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 471

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 164/478 (34%), Positives = 245/478 (51%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +        E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRK----GSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  R I     +  L   P +I N     +KV+TP+ K   Q  N+    + +     I 
Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFILTKRPRGIE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +                       +  GE+ A   L +F    +  Y   RD PA   TS
Sbjct: 173 IASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      L+   ++      +    +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-HTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGV 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +  D + +     YP PI+DH++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
 gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
          Length = 496

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 169/493 (34%), Positives = 245/493 (49%), Gaps = 21/493 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  SL +
Sbjct: 6   PVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQSLAE 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +     Q    +      + + +   Q     +F N   E   + RD  + + L
Sbjct: 65  LDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQVARSL 124

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P      + 
Sbjct: 125 KSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASK 184

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  R        +                +    L      ++  Y   RD PA+
Sbjct: 185 LADLPDTERRTIPSAADLGFAPDTLAGLRLPTGVSGARRLLADFLPRLPQYKAARDFPAL 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+FY  ++A 
Sbjct: 245 KGPSYLSVHLRFGTVSIRELARLAHEAAHHEDWSAAAREGAATWLSELIWRDFYFQILAH 304

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P   + + F P  + IEW   +       AW +G TG+P++DAAMRQLNT G+MHNRLR
Sbjct: 305 QP-YVVERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYMHNRLR 363

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 364 MVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 423

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACH 468
            ++FDP+G FI  ++PEL  +P +  HAP              L  +YPLP+VDH  A  
Sbjct: 424 SEKFDPEGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAARE 483

Query: 469 HTLNQYYAAKKQS 481
            TL +Y   KK+S
Sbjct: 484 KTLARYGILKKES 496


>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----EEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
 gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
          Length = 476

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 244/480 (50%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTQEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            I+ M+   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLPIVDHK A    L  Y + KK
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKSMKK 474


>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
 gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 166/479 (34%), Positives = 250/479 (52%), Gaps = 21/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A   A   + A VI V+I   +             +++ SL  +  
Sbjct: 9   IVWFRQDLRLADNPA-LQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLASLAS 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q G      +     ++ E LD+   Q     +F+NR YE    +RD+ ++  L+ R
Sbjct: 68  DLQQLGGELALMK----GEAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSLKDR 123

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PVPAIRLT 185
            +  +SF+ S+++ P  I       YKV+TPF K+L  +   A+         + A    
Sbjct: 124 GVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRPDALQLHAHEGG 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++          +   +  GE  A   L +F K  V  Y ++RD+P   GTS+L
Sbjct: 184 LSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSGTSRL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SPRQ W+ +K+           GA ++L+E+ WREF  +L+  +P +    
Sbjct: 244 SPHLHFGEISPRQVWHAVKQSDHARTG----GADTYLSEIAWREFSYNLLYHFPDLPEAN 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    +  EW++    L+AW++G TG+PI+DA MR+L   GWMHNR+RMI ASFL+KDL
Sbjct: 300 -FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR GE++F   L+D DLASN   WQW A +G D+ PYFR+FNP  Q ++FDP+G ++
Sbjct: 359 FIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPKGDYL 418

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL ++P + IHAP +            L   YP PIVDH +A    L  +   K
Sbjct: 419 RKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFEKIK 477


>gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 207/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +   + L         W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 484

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 224/490 (45%), Gaps = 29/490 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+ DN+ L  A       V  +F+   +        A +  ++  +L ++
Sbjct: 1   MQLHWHRRDLRVADNRGLATAAEA--GPVAPLFVFDRDVLD--HAGAPRVRYLLDALAEL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +     D    + +        +  +   Y      RD  +   L 
Sbjct: 57  RGAYQERGSDLLVAR----GDPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +   D++  PPGSI  +A   Y VYT F K                  +     
Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLVDAAT 172

Query: 188 VTPSNIPRFFDY-----------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +  +                           +    + P G + A   L  FC + +Y Y
Sbjct: 173 LESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIYRY 232

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LS  L  G +  R+ +         +  +       + ++L WREF
Sbjct: 233 ADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREF 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y H++  +P+V     +  + E I W  D   L AWK G TG+PI+DA MRQL    +MH
Sbjct: 293 YAHVLRGHPNVVTEN-YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFL KDLL DWR G  +F   L D D A++NGGWQWAASTG D+ PYFRIFN
Sbjct: 352 NRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACH 468
           P  QG+R+DP G +I+ ++PEL++V    IH  H    L++  L+ +YP PIVDH +   
Sbjct: 412 PMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAERRE 471

Query: 469 HTLNQYYAAK 478
             ++ + AA+
Sbjct: 472 RAISMFEAAR 481


>gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 208/473 (43%), Positives = 296/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +   + L        SW ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSSWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 471

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L   
Sbjct: 62  ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            I  + F D  +  P ++LN   + +KV+TPF++A +               P+    L 
Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKVLE 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +      F     +     +     + L  LR+F +E+   Y  +RD PAI GTSQL
Sbjct: 182 QLESARFNSSFTFSYPRESSEDWLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471


>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
 gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
          Length = 468

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 166/477 (34%), Positives = 236/477 (49%), Gaps = 17/477 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVH+ W R DLR TDN +L AA       VI  FI  P        S  +  F+  SL 
Sbjct: 1   MSVHVHWHRRDLRATDNHSLSAAAET--GSVIPAFIFDPAVLE--FASPPRVAFMLESLS 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++    ++G            D  E L     +    ++ +NR Y     +RD+ + + 
Sbjct: 57  ELRAWYRERGGDLVV----ATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I   S DD++L  PGSI     + Y VY+ F K       ++ +     P     
Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVS---APDGEQL 169

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V+  ++P      F   +   P  G + A   L  FC + +Y Y +QRD PA   TS 
Sbjct: 170 ASVSGDSLPSQEALGFDDPEATIPDAGMEAARRRLETFCADPIYRYADQRDDPAADATSG 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSP+L  G +  R  +  L     +   +        + ++L WR FY H++   P    
Sbjct: 230 LSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTVT 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              +  +   I+W  D+  LQAWK G TG+PI+DA MRQL    +MHNRLRMI ASFL K
Sbjct: 290 AN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR G  +F  +L D D AS+ GGWQWA+ TG D+ PYFRIFNP  QG+R DP   
Sbjct: 349 DLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAE 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR ++PEL +VP + IH   +    ++  ++  YP PIVDH       L+ + AA+
Sbjct: 409 YIRTYVPELADVPAETIHEWVALEPDERASVAPEYPDPIVDHAARREAALDMFEAAR 465


>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
 gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
          Length = 476

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 243/480 (50%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTG 186
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +          + 
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +++  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 476

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVNK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126]
          Length = 467

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 235/480 (48%), Gaps = 25/480 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC     K++ ++I                 +++ SL  + K 
Sbjct: 1   MWFRQDLRVKDNPALNAACDM--GKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNKR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130
           L       Q  +     D    +           +F+NR YE  ++ RDK ++K L    
Sbjct: 59  L---NGHLQIFK----GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRLT 185
               S + S+L  P  +L      Y+V+TP+ K            +A    +    +   
Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDND 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                S            I+  +  GE  A   L  F +     Y + RDIP+  GTS+L
Sbjct: 172 SDGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SP Q W  +K++F +   K      ++L+EL WREF  +L+  +P++   K
Sbjct: 232 SPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFPTLP-NK 287

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    +K  W  D+  L+AW++G TG PI+DA MR+L   G+MHNR+RMI  SFLVK+L
Sbjct: 288 NFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 347

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++FD +G ++
Sbjct: 348 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R + PEL  +  +YIH P             +L   YP PIVD K +    L+ +   K+
Sbjct: 408 RKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 467


>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
 gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
          Length = 513

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 169/491 (34%), Positives = 240/491 (48%), Gaps = 26/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----ARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   E             R+  FI  SL
Sbjct: 28  GLVWFRRDLRADDHAALHYALKHC-RQVWCVFVFDREILDPLIARGRKVDRRVEFILRSL 86

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L+  G           D + + +     +     +F N  YE    RRD  + +
Sbjct: 87  EPLRRTLTDAGGGLIVLD----DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAVRQ 142

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L     +  +F D V+     +L    Q + V+ P++ A ++ +   DLR  PV     
Sbjct: 143 ALASDSRVLFTFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLRPYPVDQYLG 202

Query: 185 TGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                P    +              +  +      +    L     +++  Y  +RD P+
Sbjct: 203 ALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFIDRIGDYGYRRDFPS 262

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       +  +    +   GA  WL+ELIWR+FY  ++  +
Sbjct: 263 LRGPSYLSVHLRFGTISIRTLARAALDAVLRGGSESA-GAAVWLSELIWRDFYFMILHHH 321

Query: 299 PSVCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P V  GK F P  +    ++        QAW    TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 322 PRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLRM 381

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFLVKDL VDWR GE+YF  QL D D ++NNGGWQWAASTG D+ PYFRIFNP  Q 
Sbjct: 382 VTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQS 441

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP L  +P QYIHAP +            L  NYP PIV H+ A   
Sbjct: 442 EKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPIVQHEVARKQ 501

Query: 470 TLNQYYAAKKQ 480
           TL +Y A +K 
Sbjct: 502 TLERYAAIRKS 512


>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
 gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
          Length = 471

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A FIATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVACFIATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            +   +F D  +  P ++LN   + +KV+TPF++A +Q      V    R   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     F     +     + +   + L  LR F +E+   Y  +RD PAI GTSQL
Sbjct: 182 AVKQDGFDADFTFSYPRESSEAWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  G+
Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 206/473 (43%), Positives = 294/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +   + L         W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKIGRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
 gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
          Length = 484

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 162/488 (33%), Positives = 240/488 (49%), Gaps = 27/488 (5%)

Query: 6   AMSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           AMS     L+W R DLR+ DN AL AA       V+AV+I   E             +++
Sbjct: 7   AMSNASPTLLWFRRDLRLADNPALTAAVRRG-RPVVAVYILDDEDAGDWASGGASRWWLH 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL ++ +SL  +G      +      +   LD    +     +++NR YE     RD+ 
Sbjct: 66  HSLERLAESLRGRGSRLILRR----GAAAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRS 176
           ++  L+      +SF+ S+L  P  I +     Y+V+TPF KAL        L+    R 
Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRI 181

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             +     +  +    +          +   +  GE  A   L  F       Y ++R+ 
Sbjct: 182 PTLEVAPASDDIDAWALTPSKPDWAFGLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRNF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTS+LSP+L  G + PRQ W+                   +L+E+ WREF  HL+ 
Sbjct: 242 PGTNGTSRLSPHLHFGEIGPRQIWHAA------SFHHTGMATDQFLSEIAWREFSHHLLF 295

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +    P  P     +W+ D   L AW+ G TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 296 HFP-MLPTTPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRMI 354

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDLL+ W++G  +F   L+D DLASN+  WQW A  G+D+ P+FR+FNP++QG 
Sbjct: 355 VASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQGA 414

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           +FDPQGT++R W+PE+  +P   IH P              L  +YPLPI+DH+ A    
Sbjct: 415 KFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDRA 474

Query: 471 LNQYYAAK 478
           L  + + +
Sbjct: 475 LTAFRSLR 482


>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
 gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
          Length = 500

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 220/483 (45%), Gaps = 17/483 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL AA   +   + A+++   +      +      ++  SL  
Sbjct: 24  SPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRA 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  +G+     +        E              F +R           +  + L
Sbjct: 83  LAADLKDRGVPLILRRGPANRVVPEVAALLGAATVA---FNDRAGAAETRVDHAVAARLL 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAI 182
                  SF   +L PPGS+   +  M + ++ F +A ++       + A      V   
Sbjct: 140 SEDRRVLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKARRLDTPLPAPKHLDGVAHP 199

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                +   ++          +   +  GE  A   L  F    +  Y E RD P +   
Sbjct: 200 PEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAEGRDRPDLNHV 259

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SPRQ  + ++    +    P   A  +  EL WREF  HL+A  P + 
Sbjct: 260 SRLSPHLRFGEISPRQILSAVR-HAAEAGAVPLVDADKFEAELYWREFSYHLLAEMPDLA 318

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                    +   W +    L+AW +G TG+P++DA +RQL   GWMHNR+RM+ ASFL 
Sbjct: 319 RSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRVRMVVASFLT 377

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFRIFNP  QG++FDP G
Sbjct: 378 KHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVTQGEKFDPDG 437

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
           T++R ++PEL  +P   IH P +            L   YP P+VDH  A    L  + +
Sbjct: 438 TYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAARERALRAFES 497

Query: 477 AKK 479
            +K
Sbjct: 498 TRK 500


>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
 gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
          Length = 471

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 234/484 (48%), Gaps = 29/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ + W R DLR++DN AL AAC   +  VI ++I   +++          +++Y SL  
Sbjct: 4   SIVIHWFRQDLRLSDNPALSAACEAGE--VIPLYILNDKEYGAREFGGATKNWLYYSLKA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL          +     D    ++S   +     +F+NR YE   V  D  L+  L
Sbjct: 62  LNESLK---GQLLIRR----GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDL 114

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------QNLVQADLRSLPVP 180
           +   I  KSF+ S+L  P  +       YKV+TPF +         +  +    +    P
Sbjct: 115 EENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRKPLPVPDQLRIHP 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                  +   +  GE+ A + L  F ++ +  Y + R+ PA+ 
Sbjct: 175 LNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPALT 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +SP Q W  L         +       + +EL WREF   L+   PS
Sbjct: 235 HTSRLSPHLHFGEISPNQIWWVL------GSHEETRDIDHFRSELGWREFSYSLLFNNPS 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +          +   W  D   L AW++G TG PI+DA MR+L   G+MHNRLRMI  SF
Sbjct: 289 LPKSN-LNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK+LL+DWR+GEE+F   L+D DLA+N+  WQW A  G D+ PYFRIFNP +QG++FD 
Sbjct: 348 LVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDA 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G + R +LPEL ++P +Y+  P              L  NYPLPIVD KK+    L  +
Sbjct: 408 HGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEALRAF 467

Query: 475 YAAK 478
              K
Sbjct: 468 EEIK 471


>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
 gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
          Length = 493

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 172/493 (34%), Positives = 246/493 (49%), Gaps = 35/493 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVW R DLR TD+ ALY A  + + +V  VF+            W+          R+
Sbjct: 7   TALVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRR 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI ASL ++  +L  +G          + D  + +     + RV  +F N  YE   +
Sbjct: 66  VEFILASLRELDDALRAQGGGLIVL----YGDPADLVPKLADELRVDAVFANHDYEPAAI 121

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + +RL      C +F D V+     +L    + + V+TP++ A ++ L    L+ 
Sbjct: 122 ERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLKP 181

Query: 177 LPVP------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            PV       A    G            +    +  +      +    L      ++  Y
Sbjct: 182 YPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVTRIASY 241

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E+RD PA +G S LS +L  G +S R       E     L     GA +WL+ELIWR+F
Sbjct: 242 AERRDFPAARGPSYLSVHLRFGTVSIRTLARLAHEI---SLQPDGRGAATWLSELIWRDF 298

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  +++ +P +  G  F    + + W +         AW +G TG+P+IDAAM QLN  G
Sbjct: 299 YFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLNRTG 358

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFLVKDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ PYFR
Sbjct: 359 YMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQPYFR 418

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           IFNP  Q ++FD  G FI+ +LP+L  +P +++HAP     +        L  +YP PIV
Sbjct: 419 IFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAPWLAGAQKLAAFGVVLGEDYPQPIV 478

Query: 462 DHKKACHHTLNQY 474
           DH +A   TL ++
Sbjct: 479 DHAQARARTLARF 491


>gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL  A   +    +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTAL--ASAMAAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +        ++  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I        L   PGS+L  +   +KV+  FR+A +  L  +    +  PA +    
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           VT    P     FD P   +  ++P GE  A H L  F ++ ++ Y ++RD+PA  GTSQ
Sbjct: 180 VTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M 
Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K+
Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G F
Sbjct: 360 LLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R WLPEL  +  + IH P S         +YP PI+D  ++    L+ +   
Sbjct: 420 LRRWLPELQGLGKREIHNP-SAQRSLFGKADYPAPIIDLGESRARALDAFRNL 471


>gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
 gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
          Length = 473

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 170/479 (35%), Positives = 236/479 (49%), Gaps = 25/479 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            + W R DLR+ D+ ALY A  NS A V  VF+              R+  FI+ SL ++
Sbjct: 7   SICWFRRDLRLDDHAALYHALKNSRA-VHCVFVFDTVILDALSDKHDRRVEFIWHSLYEL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L Q G   Q        + +E +     +  V  +F NR YE   VRRD  +   L 
Sbjct: 66  NALLQQHGSTLQILH----GNPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLS 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRL 184
                  + D V+     IL      Y V+TP++ A ++ L    ++A        ++  
Sbjct: 122 DID-FHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAK 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           + P     +      P +      P G   A   L +    ++  Y E R+ PA++G S 
Sbjct: 181 SAPQAFPALALLGFLPGKLNVQALPTGASGA-ATLFENFVSRIDAYGEARNFPAVKGVSY 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +S R+  +              +G   WL+ELIWR+FY+  +  +P +  G
Sbjct: 240 LSVHLRFGTISIRRVASFAY-------YSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQG 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F      I +  +     AW +  TG+P+IDAAMRQLN  G+MHNRLRM+ ASFLVKD
Sbjct: 293 AAFKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKD 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YF   L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FD  G F
Sbjct: 353 LHIDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRF 412

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR ++PEL   P ++IHAP              +   YPLP+VDH  A   TL  + AA
Sbjct: 413 IRRYVPELAGCPDKWIHAPWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471


>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 483

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 242/483 (50%), Gaps = 21/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN+AL AA H S   +I V+I  P       + A Q+ +++ SL  + +
Sbjct: 10  ILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEALDR 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++             D++E L +   +     +F+NR+Y+ + +  D  +++ L+ +
Sbjct: 69  SLHERQGELVL----ASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 124

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            I        LL   S L       Y+VYTPF +AL      +  ++A  +         
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLASQRPA 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +        +    ++  GEQ A   L  F ++++  Y E RD PA   TS 
Sbjct: 185 SETLKSWKLLPTKPDWAKGFADLWTPGEQGARERLSAFVEDELKGYKENRDYPAKPATSM 244

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L++G +SP + W+  +     +          +  E+ WREF  HL+  +P +   
Sbjct: 245 LSPHLALGEISPARIWDATRGLSNRVPAA---DIVHFRKEIAWREFSYHLLFHFPRLASE 301

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +  +W  D    +AW++G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KD
Sbjct: 302 NW-NDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG+ FDP G +
Sbjct: 361 LMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFDPDGDY 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R  +PEL  +  +YIH P              L   YP PIVDH  A    L  Y A K
Sbjct: 421 VRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRALAAYKATK 480

Query: 479 KQS 481
             +
Sbjct: 481 DAA 483


>gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
 gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 242/467 (51%), Positives = 316/467 (67%), Gaps = 3/467 (0%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC +  A+V+A+++ATP QW    ++ RQ+ FI+ +LL +Q +
Sbjct: 1   MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L   +
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAALT--I 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A QM+KV+TPF++A ++ L+ ADLR LP P+ R  G   P 
Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
              RF     +    +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL++
Sbjct: 179 QAERFNYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLTL 238

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           GVLSPRQC   L+ + + +     SGA +WLNELIWREFYRHL+  +P +C  +PFIPWT
Sbjct: 239 GVLSPRQCLAALQPQAL-VSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            +I W  D   L  W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+DWR+
Sbjct: 298 ARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE
Sbjct: 358 GERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           L +VP   IH P  W  +    L+YP P VDH +A   TL  +  A+
Sbjct: 418 LRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464


>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI]
 gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
           str. CI]
          Length = 476

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 245/481 (50%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97]
          Length = 589

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 251/490 (51%), Gaps = 19/490 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I                +   C      +LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
             + I    +D   +  PG +     + Y VYTP+ ++ +  L Q               
Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +   T  N  + F    +    M+P GEQ A   LR+F  +K   Y  
Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579

Query: 472 NQYYAAKKQS 481
            +Y  A + S
Sbjct: 580 AKYKKAAQGS 589


>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
 gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
          Length = 495

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 163/489 (33%), Positives = 240/489 (49%), Gaps = 29/489 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL+ A      +V   FI       +   + R+  FI+ASL ++  
Sbjct: 8   LVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELDT 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           +L   G             + + +     +  V  +F N  YE   + RD  +   L   
Sbjct: 67  ALRALGGGLIVRHA----RAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALATD 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
               +++ D V+     +L+ + + + V+TP++ A ++ L      AD+ +  +  +R  
Sbjct: 123 GRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLRAH 182

Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               P+N+                 +   P G Q     L     +++  Y   RD PA+
Sbjct: 183 FAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQA-LFDDFIDRMPDYDSTRDFPAV 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S LS +L  G +S R    R  +           GA  WL+EL+WR+FY  ++  +P
Sbjct: 242 KGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGT--GAAVWLSELVWRDFYFMILYQHP 299

Query: 300 SVCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            V   + F P  +            L QAW  G TG+P++DAAM QLN  G+MHNRLRM+
Sbjct: 300 HV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLRMV 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q +
Sbjct: 359 TASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQSE 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           +FDP G FIR +LP+L  +  + IHAP              L  +YP P++ H +A   T
Sbjct: 419 KFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARART 478

Query: 471 LNQYYAAKK 479
           L +Y   KK
Sbjct: 479 LLRYAVVKK 487


>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
 gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
 gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
           CB15]
 gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
          Length = 483

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 171/475 (36%), Positives = 241/475 (50%), Gaps = 17/475 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL  A   S   VI ++I   E      +      ++  SL  +  
Sbjct: 18  IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILD-ETPGIRPMGGASLWWLDKSLKSLAA 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      + E LD    Q     + +NR Y+     RD  ++  L+ R
Sbjct: 76  SLETLGTKLVLRK----GVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDR 131

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIRL 184
            + C+SF+  +L  P ++ N + Q YKV+TP+ +A  ++L       A    +       
Sbjct: 132 GVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPA 191

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +   N+        +  D   P GE  A   L  F K  +  Y +QRDIP ++ TS+
Sbjct: 192 SESLASWNLHPTKPDWSKGFDLWTP-GEAGAHARLDAFLKGPIKGYGDQRDIPGVEATSK 250

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G + PRQ W        D    P + A  +L+E+ WREF   ++  +P +   
Sbjct: 251 LSPHLHFGEIGPRQVW-LATRSAADQGDIPLAEADKFLSEIGWREFNHSILYNWPHMPSA 309

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  +   W KD   L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K 
Sbjct: 310 N-FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKH 368

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE +F   LLD DLA+N G WQW A +G D+ PYFRIFNP  QG++FDP+G +
Sbjct: 369 LMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDPKGDY 428

Query: 425 IRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R W+PEL NV    IH P +            Y  PIVDH  A    L  Y+  
Sbjct: 429 VRRWVPELRNVSDDVIHKPWTKPLHLPAGAKRLYSRPIVDHAMARARALEAYHGL 483


>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
          Length = 630

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 259/486 (53%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR++DN+AL  A      +   +IA++I +P+ +  H  S  +  F+  +L  
Sbjct: 139 VHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEV 198

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           ++  L++  I              + +     Q     L+ N +YE++E  R   ++   
Sbjct: 199 IKHDLAKLDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDELRREASMIRDF 258

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADLRSLP 178
            ++    +   D+ ++PPG +   A + Y VYTP+ ++ + ++ +              P
Sbjct: 259 AENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPPEKNP 318

Query: 179 VPAIRLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A ++   +    IP             + +  ++P GE  A   L KFC+E +  Y +
Sbjct: 319 SSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIGNYQK 378

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IPA  GTS +S +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 379 KRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAWRDFY 438

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQLN +G+MHN
Sbjct: 439 KHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLGYMHN 498

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI A FL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 499 RCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 558

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL ++  + IH P++    +    N YP PIV HK      
Sbjct: 559 LLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDCRDRA 618

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 619 LAAYKE 624


>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
 gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
          Length = 476

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 244/480 (50%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     + +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
 gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
          Length = 493

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 168/491 (34%), Positives = 235/491 (47%), Gaps = 20/491 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V LVWLR DLR+ D+ ALY A      +V  VFI   +       + R+  FI  SL  
Sbjct: 6   PVGLVWLRRDLRLADHAALYHALRQC-RQVHCVFIFDDDILAPLPCADRRVEFICQSLSG 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L Q                 E +     Q     +F N   E + + RD  + + L
Sbjct: 65  LDDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQAL 124

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQADLRSLPV 179
               +   SF D ++     +L  A   + V+TP++ A ++ +         ++      
Sbjct: 125 AAEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPER 184

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A R  G   P        +    +D +           L      ++  Y + RD PA+
Sbjct: 185 LAPRPEGERRPVPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLPRLPRYKQARDFPAV 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S LS +L  G +S R+      E+          GA +WL+ELIWR+FY  ++A +P
Sbjct: 245 KGPSYLSVHLRFGTVSIRRLARLAWEQT-QSQPHDAEGAATWLSELIWRDFYFQILAHHP 303

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            V     F P  + I W+          AW +G TG+P++DAAMRQLNT G+MHNRLRM+
Sbjct: 304 HVVHA-SFKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMV 362

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q +
Sbjct: 363 AASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 422

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHT 470
           +FD    FI  ++PEL  +P    HAP              L  +YP P+VDH  A   T
Sbjct: 423 KFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAARERT 482

Query: 471 LNQYYAAKKQS 481
           L +Y   K+ S
Sbjct: 483 LARYGVVKQAS 493


>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
 gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
          Length = 481

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 255/480 (53%), Gaps = 18/480 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR++DN AL AAC     +++ +F+      R H   +    F+   L +++
Sbjct: 3   GLVWFRRDLRLSDNPALSAACQEC-REIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELR 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL+  G+           D +E +       +V  +++NR YE   + RD+ +++RL  
Sbjct: 62  RSLALHGVSL----AWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREVQQRLAQ 117

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP- 187
           +    ++F D V+     +   +   ++ Y+ +R         A    L +P+    G  
Sbjct: 118 QGRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKA 177

Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P   D  ++++      GEQ A   L+ F +  V+ YV  R++PAI GTS+L
Sbjct: 178 STPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +S R   +             ++  F+W++EL+WREF++ ++A +P V  G 
Sbjct: 238 SPHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGP 297

Query: 306 PFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                             +   AW QG TG+PI+DA MRQLN  GWMHNR+RM+ ASFLV
Sbjct: 298 FKAKPGLPEPRPAGPERDRLFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFLV 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++  +RIFNP IQ ++FD +G
Sbjct: 358 KDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAEG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R ++PEL +VPT++IH PH             +  +YP PIVDH++A    L+   A
Sbjct: 418 EYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLDLGKA 477


>gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 467

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 209/472 (44%), Positives = 284/472 (60%), Gaps = 6/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LV    DLR+TDN AL  A  + +  VIA F+ATPEQW+ H +S  Q+  I+  L  +
Sbjct: 1   MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L Q  +   Y +  ++  +  WL   C Q  V ++F NR YEINE  R + L +   
Sbjct: 60  QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++FDD  +L PGS+LN     +KV+TPF+KA ++ + +  +R   V A+      
Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSALVTAPAN 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +    F YP +     + +     +  LR F  +K   Y  +RD PA+  TS LSPY
Sbjct: 180 LLFDSSSSFSYPTRDSS-GWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTSMLSPY 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+IG +S RQC  RLK  +        +GA +WL+ELIWREFY+HL+ F P +C    ++
Sbjct: 239 LAIGAISARQCVARLK--YDAANTSLSTGAETWLSELIWREFYQHLIYFEPKLCKHHGYL 296

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            W + ++W       + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL KDL +D
Sbjct: 297 SWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTKDLHID 356

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE+YFM+QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FD  G FIR W
Sbjct: 357 WRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGEFIRTW 416

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +PELN+VP ++IH P  W +  ++  +YP PIVDHK     TL  Y  AK Q
Sbjct: 417 IPELNSVPNKFIHKPWLWNEFENV--DYPQPIVDHKIQRDITLALYKDAKDQ 466


>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 512

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 167/493 (33%), Positives = 244/493 (49%), Gaps = 21/493 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  SL +
Sbjct: 22  PVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQSLTE 80

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +     Q    +      + + +   Q     +F N   E   + RD  + + L
Sbjct: 81  LAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSL 140

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P      + 
Sbjct: 141 KSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASK 200

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  R        +                +    L      ++  Y   RD PA+
Sbjct: 201 LADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPAL 260

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+FY  ++A 
Sbjct: 261 KGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAH 320

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P   + + F P  + IEW   +       AW +G TG+P++DAAMRQLN+ G+MHNRLR
Sbjct: 321 QP-YVVERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLR 379

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 380 MVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 439

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDP G FI  ++PEL  +P +  HAP              L  +YPLP+VDH  A  
Sbjct: 440 SEKFDPDGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGITLGRDYPLPVVDHAAARE 499

Query: 469 HTLNQYYAAKKQS 481
            TL +Y   KK++
Sbjct: 500 KTLARYGILKKEA 512


>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
 gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
          Length = 499

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 181/493 (36%), Positives = 248/493 (50%), Gaps = 37/493 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQS 58
            LVW R DLR TD+ ALY A  + + +V  VF+            W+          R+ 
Sbjct: 14  GLVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRI 72

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            FI ASL ++  +L   G          + D  E +     + RV  +F N  YE   + 
Sbjct: 73  DFILASLAELDDALRANGGGLVVL----YGDPAELVPKLAAELRVDAVFANHDYEPVAIE 128

Query: 119 RDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  + +RL  +     +F D  +     +LN   + + V+TP++ A ++ L   DL+  
Sbjct: 129 RDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKPY 188

Query: 178 PVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           PV        A+          + +    P    D   P G   A  +L  F      Y 
Sbjct: 189 PVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLTRIDSYA 248

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E+RD PA +G S LS +L  G +S R      +  +   L     GA +WL+ELIWR+F
Sbjct: 249 -ERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAYEMSLQPDGKGAATWLSELIWRDF 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G PF P  E + W           AW  G TG+P++DAAM QLN  G
Sbjct: 305 YFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNHTG 364

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFL KDL VDWR+GE YF   L D D ++NNGGWQWAASTG D+ PYFR
Sbjct: 365 YMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPYFR 424

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           IFNP  Q ++FDP G FI+ +LP+L  +P ++IHAP     +        L  NYP PIV
Sbjct: 425 IFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAPWLAGAERLAEYGVVLGGNYPEPIV 484

Query: 462 DHKKACHHTLNQY 474
           DH +A   TL +Y
Sbjct: 485 DHAQARERTLIRY 497


>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
 gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris HaA2]
          Length = 487

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 152/487 (31%), Positives = 224/487 (45%), Gaps = 26/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYASL 65
           +VW R+DLR++D+ AL+AA   S + +I +++   +  +        I      ++  SL
Sbjct: 10  IVWFRDDLRLSDHPALHAAA-ASGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQSL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   L Q+G      +      +   +     Q     + +N             L +
Sbjct: 69  RALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWNEIEIAPHRAIADDLAE 124

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPV 179
            L    I        L + P  I     +  +V+TPF + ++        + A       
Sbjct: 125 TLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLGDPPKPLPAPAMLRAG 184

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P I    P T    P   D+         P   + A H L     +++  Y   RD P  
Sbjct: 185 PDIASDDPATWQLEPTAPDWAGGLRASWTPG--ERAAHDLLTAFLDRLPGYAADRDRPDR 242

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LSP+L  G +SPRQ W               +    +L+EL WREF RHL+  +P
Sbjct: 243 DATSLLSPHLRFGEISPRQLW-YAARFAAAKRPAIAADIDKFLSELGWREFCRHLLHDHP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +          +   W +D   L AW++G TG+PI+DA MRQL   G MHNR+RM+ AS
Sbjct: 302 DLAERN-LQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVVAS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR+GEE+F   L+D D  SN G WQW A +G D+ PYFR+FNP +QG++FD
Sbjct: 361 FLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R W+PE+  +P ++IH P +            L  NYP PIVDHK      L  
Sbjct: 421 PAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARALAA 480

Query: 474 YYAAKKQ 480
           Y   ++ 
Sbjct: 481 YAELRQS 487


>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
 gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
          Length = 480

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 190/479 (39%), Positives = 265/479 (55%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A        I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHASQQ--GPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK ++  L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123

Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180
           +      F D  + P  SI N + Q Y+V+  F+KA    L             +    P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           A               F  P  + +    +P GE  AL  L  F K+++  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480


>gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
 gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
          Length = 471

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 190/477 (39%), Positives = 282/477 (59%), Gaps = 14/477 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W+R DLRI DN AL +A  N  +  IAVFI+TP++W QH ++  ++ FI+  L 
Sbjct: 1   MS-DILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLK 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L+  GI   + + ++FDD  + L     Q     +F N + E   V      ++ 
Sbjct: 58  QLEAELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPE---VDEQARDQQL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--------LP 178
           +   +  +  D  V+LP GS+LN   +M+KV+TPF+ A ++ +    ++           
Sbjct: 115 ISSGINLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNN 174

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A+      T      +           +P+ +    +++  F   KV  Y   RDIP+
Sbjct: 175 AKALLPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPS 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+HLM  +
Sbjct: 235 VKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHH 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G  F      ++W +D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+ A
Sbjct: 295 PKLVKGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVA 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE +FM  L+DGD ++NNGGWQWA+STG D+ PYFRIFNP  Q ++F
Sbjct: 355 SFLTKHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G FIR ++PEL N+P +++H PH ++ KN ++  Y  PIV+HK+A    L  + 
Sbjct: 415 DPKGIFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEARLRALAFFK 471


>gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155]
 gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155]
          Length = 505

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 196/493 (39%), Positives = 280/493 (56%), Gaps = 21/493 (4%)

Query: 6   AMSV------HLVWLRNDLRITDNKALYAACHNSDAKVI---AVFIATPEQWRQHGISAR 56
           +MS+       L+W R DLR+ DN+AL AAC  + A  +   A++IATP QW++H ++  
Sbjct: 17  SMSIKVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPI 76

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           Q  FI   +  + + L+  GI F+  Q   F D   ++  YC QQ ++++F        E
Sbjct: 77  QLDFIERHINLLAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFA---GSEPE 133

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           +   +  +  +Q  +     D+  LL PG++LN +  MYKV+TPF +   +  + A    
Sbjct: 134 INEQQRDQACIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAI 191

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             +P     GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD 
Sbjct: 192 FLLPVPAPLGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDF 251

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+ 
Sbjct: 252 PAIDGTSSISPYLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLV 311

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+
Sbjct: 312 AFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMV 371

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q +
Sbjct: 372 VASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSE 431

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHH 469
           +FDP G+FIR +LPEL +   + +H P +    +       ++   YP  IV+H  A   
Sbjct: 432 KFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARAR 491

Query: 470 TLNQYYAAKKQSL 482
            L      KK + 
Sbjct: 492 ALTVLGVLKKAAA 504


>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
 gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
          Length = 482

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 238/482 (49%), Gaps = 17/482 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+   ++W R DLRI D  AL AA  +   KV+ ++I   +             +++ SL
Sbjct: 1   MTDTVVLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGASRWWLHHSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + +   G    + +      ++  L   C       ++ +R+YE    + ++ L K
Sbjct: 60  TALAQDIDHLGGTLIFRK----GKTLSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYK 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAI 182
            L    I  K F  S+L  PGS+L      +KV+TPF +A  +N     A+  S+     
Sbjct: 116 ALDSDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEKPSVAWAEG 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +         + +  +  GE  A   L  F  + V  Y ++RD+P++  T
Sbjct: 176 IQSDTLDAWKLLPRDPDWAASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVDAT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++S +L  G +SPRQ W   +++ ++      +    +  EL WREF  HL   +    
Sbjct: 236 SRMSAHLHHGEISPRQIWAMCEQKKLE-QPHSDTAINKFQAELGWREFSYHL-LHFFPHL 293

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              PF        W  +   LQAW++G TG+PI+DA MR+L   G MHNR+RM+ ASFL 
Sbjct: 294 PETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASFLC 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL  WR GE++F   L+D DLASN   WQW A +G D+ PYFRIFNP  QG++FD QG
Sbjct: 354 KHLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R W+PE+  +  +Y+H P     +        L  +YP PIVDH++A    L+ Y  
Sbjct: 414 DYVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQAALDAYEH 473

Query: 477 AK 478
            +
Sbjct: 474 IR 475


>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  316 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 247/481 (51%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
 gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
          Length = 469

 Score =  316 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SALAELVWHPEQTFGYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
 gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
          Length = 476

 Score =  316 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 248/481 (51%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
 gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + KK
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKK 474


>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
 gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
          Length = 472

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 173/479 (36%), Positives = 255/479 (53%), Gaps = 21/479 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  ++Y SL 
Sbjct: 1   MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLS 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE R
Sbjct: 56  SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183
           L    + + +  ++L  P  I N +   YK++TPF K +  +L                 
Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +         +      +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      K+    +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGK 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++  TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y  
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYKD 467


>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
           A2012]
 gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CDC 684]
 gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A1055]
 gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Vollum]
 gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Australia 94]
 gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Ames]
 gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
 gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
          Length = 476

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
 gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
          Length = 480

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 192/476 (40%), Positives = 275/476 (57%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AAC       +A+++A+P QW+ H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRVNDNTALSAACER--GPAVALWLASPGQWQAHDDAACKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + L   C Q ++  + +N +Y INE  RD+     L+
Sbjct: 59  RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   ++ D +L  PGS+L  +   ++V++ F+K  +++L ++     P    +    
Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHLHRSLPSQAPRVKRQAPVG 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    FD P +A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P +         +Y  PIVD   +    L  +    + 
Sbjct: 419 IRHWVPELRGLDEKSIHQP-TQNKDLFADNSYHRPIVDLSSSRQRALEAFKGLSRS 473


>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans
           CH34]
 gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
           metallidurans CH34]
          Length = 513

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 172/491 (35%), Positives = 242/491 (49%), Gaps = 26/491 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYA 63
           +  LVWLR DLR  DN AL+ A  +   +V  VF+   E           + R+  FI  
Sbjct: 25  TRGLVWLRRDLRTDDNAALHYALKHC-RQVWCVFVFDREILAPLLARGLHADRRVEFILR 83

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  ++++L   G        +    + + +     +  V  +F N  YE     RD+ +
Sbjct: 84  SLEPLRRALEDSGGGLIVLDGT----ARQAIPRLAAELEVEAVFANHDYEPAANDRDEAV 139

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + L     +  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+   
Sbjct: 140 RRTLAADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIEKH 199

Query: 183 RLTGPVTPSNIPRFFD------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + T    P              +    +  +      +  H L      ++  Y  +RD 
Sbjct: 200 QETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLSRIGDYGRRRDF 259

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA++G S LS +L  G +S R       +  +      + GA  WL+ELIWR+FY  ++ 
Sbjct: 260 PAVRGPSYLSVHLRFGTISIRTLARAAHDTMLRGGAASE-GATVWLSELIWRDFYFMILH 318

Query: 297 FYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V  GK F    + + W           AW    TG+P+IDAAM Q+   G+MHNRL
Sbjct: 319 HHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSGYMHNRL 378

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ PYFRIFNP  
Sbjct: 379 RMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPVT 438

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           Q ++FDPQG FIR +LP L  +P +YIHAP +            L  +YP PIV H  A 
Sbjct: 439 QSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVAR 498

Query: 468 HHTLNQYYAAK 478
             TL +Y   K
Sbjct: 499 KETLERYGVVK 509


>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
 gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
          Length = 469

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
 gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 243/480 (50%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTG 186
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +          + 
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +++  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
 gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
          Length = 476

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
 gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
          Length = 480

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 196/484 (40%), Positives = 271/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKIGFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L             +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +       P  + +    +P+GEQ AL  L +F +E V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQGTS+LSPYL+IG+LS RQC   L             G   WL+EL+WREFY+H
Sbjct: 239 RDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRI 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
 gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
          Length = 469

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 208/474 (43%), Positives = 281/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            T       P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 STLAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 471

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            +   +F D  +  P ++LN   + +KV+TPF++A +Q      V    R   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +    F     +     +     + L  LR F +E+   Y  +RD PAI GTSQL
Sbjct: 182 AVKQDAFDADFTFSYPRESSKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  G+
Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+ +VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
 gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
          Length = 476

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
 gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
          Length = 476

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L   G      +      + E + S   Q R+T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRK----GRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISKVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
           4136]
          Length = 475

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 238/481 (49%), Gaps = 13/481 (2%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V L W R DLR+TDN AL+AA   +  +VI  ++ +  +         + HF+  +
Sbjct: 3   TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + K+L   G            +++  ++    +   T L+ NR  +      +  + 
Sbjct: 62  LESLAKNLEAIGSRLIIRS----GETVSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PA 181
                  +   +  D+VL  P  +L      Y+V+TP+ K  +       L  +     A
Sbjct: 118 ALCNKLGVAFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLGDA 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   P      +  P        P  +     +       ++  Y E R+ P++ G
Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPG 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299
           TSQLSP L  G++S R+ ++R ++       +P  +SG  +++ EL WRE +   +  + 
Sbjct: 238 TSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWRE-FYMAVLHFY 296

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +   F P    + W++D   L AWK+G TGFP++DA MRQL   GWMHNR+RMI + 
Sbjct: 297 PEVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSM 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL V W  GE +FM  L+DG++ASNNGGWQW+A TG D+ P+FRI NP  Q KR+D
Sbjct: 357 FLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G +I+ W+PEL +VP +   AP +      L+  YPLPIVDH      TL ++  A K
Sbjct: 417 PEGKYIKTWVPELKDVPAEMFFAPPTNGLP--LAKGYPLPIVDHATERDRTLQRFKVATK 474

Query: 480 Q 480
           +
Sbjct: 475 R 475


>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
 gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
          Length = 469

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 279/474 (58%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAINSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
 gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
          Length = 469

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
 gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
          Length = 469

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 584

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 172/489 (35%), Positives = 251/489 (51%), Gaps = 19/489 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A       +  +IA++I +P+    H +S  +   I  +L Q
Sbjct: 94  VYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARVDLILRTLHQ 153

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ LS+  I           +  + +   C Q     L+ N +YE++E+RR+  L +  
Sbjct: 154 LKRDLSELDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVRLC 213

Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----------- 175
               I         ++PPG + +   + Y VY+P+ +  +  L +               
Sbjct: 214 AKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCLELSEEPGSNP 273

Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +         +  +   Q +  ++P GE  AL  L  F +EKV  Y E
Sbjct: 274 GDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRLEAFLEEKVRDYAE 333

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R++ + Q TS LSPY + G+LS R      +      L     G   W+ E+ WREFYR
Sbjct: 334 ARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHWIGEVAWREFYR 393

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +PS+CM K F P    +EW  D      W +G TGFPI+DAAMRQ+    WMHNR
Sbjct: 394 HVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMRQVKQDKWMHNR 453

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 454 TRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR W+PEL ++    IH P++     +   N YP P+VDH K+    L
Sbjct: 514 RQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPMVDHSKSRDLAL 573

Query: 472 NQYYAAKKQ 480
           ++Y  A K 
Sbjct: 574 HRYKRACKN 582


>gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 490

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 169/498 (33%), Positives = 242/498 (48%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E  +               R+
Sbjct: 1   MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  + Q+   L  +G          F +  E +     +  V  +F N  YE + +
Sbjct: 60  VDFIWQGIKQIDDQLRAQGGGLIVR----FSNPTECIPQLASELGVNAVFANHDYEPSAI 115

Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+++  +L+   I   +F D V+     IL ++  ++ ++TP++    + L + DL +
Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175

Query: 177 LPVPAIR------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                              P        +    I+   P G +     L  F      Y 
Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLTRIDQYQ 235

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +  RD PAI+G S LS +L  G+LS R          +        GA  WL+ELIWR+F
Sbjct: 236 I-SRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGS----MGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W        L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL +DWR GE YF   L D +L+SNNGGWQW +S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIV 461
           IFNP  Q ++FDP+G FI+ +LP+L  +  + +H P              L  +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 476

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++   +      +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEDFL----MGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474


>gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4]
          Length = 469

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 202/473 (42%), Positives = 277/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRGFCRERVQDYHQARDFPAREGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] -
           Buchnera sp. (strain APS)
 gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +   + L         W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 480

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 194/484 (40%), Positives = 270/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKIGFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L             +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F +E V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIT 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
 gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
          Length = 476

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 246/481 (51%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
 gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL  A   +    +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTAL--ASAMAAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +         +  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I        L   PGS+L  +   +KV+  FR+A +  L  +    +  PA +    
Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179

Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P +  R FD P   +  ++P GE  A H L  F  + ++ Y ++RD+PA  GTSQ
Sbjct: 180 VASDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M 
Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K+
Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G F
Sbjct: 360 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R WLPEL  +  + IH P +         +YP PI+D  ++    L+ +   
Sbjct: 420 LRRWLPELQGLGKREIHNPSTQRSLFG-KADYPAPIIDLGESRARALDAFRNL 471


>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
 gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
          Length = 475

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 238/479 (49%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D R+ DN AL+ A    +  V+ V+I     + +  + +    +++ +L   + 
Sbjct: 6   IVWIRKDFRLVDNPALFHAAK--EGMVVPVYIHDD--YEESSMGSASKWWLHHALNDFKT 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+ +        +     +  + L     +     +++N +YE + ++RDK L+     +
Sbjct: 62  SIKKIEGTLIVQK----GNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQ 117

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186
            I     +  L   P  I       YKV+T + KA  ++ V + ++    +   +  +  
Sbjct: 118 QINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVES 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                          + I   +   E+ A+ + + F K K+ +Y + RD PA    S LS
Sbjct: 178 LSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFLS 237

Query: 247 PYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYL+ G LS R  ++ L+ +         +  A  ++ +LIWR+F   L+  +P     +
Sbjct: 238 PYLATGQLSARVLYHYLRTKAEKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTT-E 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RM+ ASFLVK L
Sbjct: 297 PLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLVKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q ++FD +G +I
Sbjct: 357 LIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + WLPEL ++P+ YIH P              L+  YP PIVDHK A    L  Y   K
Sbjct: 417 KKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARERALEHYQHIK 475


>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
 gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
          Length = 480

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 192/479 (40%), Positives = 272/479 (56%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ AC       I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHACQQ--GPSIGLVILSPEQWKIHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L +  I         + D  +++     Q  +  ++ N +  +NE++RDK +++ L  
Sbjct: 64  KELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQ 123

Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
           +      F D  + P  SI N + Q Y+V+  F+KA    L +    +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNP 183

Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + SNI        +A            ++P GE  AL  L  F +  +  Y  +RD P 
Sbjct: 184 ESDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL++G+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIANEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKETRMKAIETFKSI 480


>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
          Length = 478

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/489 (31%), Positives = 228/489 (46%), Gaps = 27/489 (5%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYAS 64
           M++  LVW R+DLR+ DN AL AA  +S A VI  ++        H  +      ++  S
Sbjct: 1   MTIPVLVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + +S++Q+G      +     +++  +     +     LF NR Y ++ +R D L  
Sbjct: 60  LTSLAESIAQRGGRLVLRR----GEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFM 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLP 178
                 +  + FD  +L  P ++     + ++V+TPF K L   L         D     
Sbjct: 116 VLRVAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPV 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +  +   ++          +   +  GE  A   L  F    V  Y   RD P 
Sbjct: 176 DDPPPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPD 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LSP+L  G +SPRQ W   +            G  ++L EL WREF  HL+   
Sbjct: 236 KPLTSKLSPHLRFGEISPRQVWTAARHHPPGG------GMDAFLRELGWREFCHHLLFQA 289

Query: 299 PSVCMGKPFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P++        +      E  +    L AW+ G TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 290 PTMAEEPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMI 349

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDLL+ W+ GE +F   L+D   A+N  GWQW A  G D+ P+FRIFNP  QG+
Sbjct: 350 AASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGE 409

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           RFDP+G ++R WLPEL ++P+  IH P              L   YP P++DH  A    
Sbjct: 410 RFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHARVRA 469

Query: 471 LNQYYAAKK 479
           L       +
Sbjct: 470 LEALAVVNR 478


>gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60]
          Length = 471

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 237/467 (50%), Positives = 310/467 (66%), Gaps = 3/467 (0%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW    ++ RQ+ FI+ +L  +Q++
Sbjct: 1   MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L    
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A  M+KV+TPF++A ++ L  ADLR LP P+ R      P+
Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
            + R           +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL++
Sbjct: 179 PVARVDYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLTL 238

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           GVLSPRQ      +        P SGA +WLNELIWREFYRHL+  +P +C  +PFIPWT
Sbjct: 239 GVLSPRQ-CLAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            +I W  D   LQ W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+DWR+
Sbjct: 298 ARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE
Sbjct: 358 GERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           L  VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 418 LREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464


>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
 gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
          Length = 471

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 205/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLQHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I     +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            +   +F D  +L P ++LN   + +KV+TPF++A +Q      V    R   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSEQLE 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     +     +     +     + L  LR F +E+   Y  +RD PAI GTSQL
Sbjct: 182 AVKQDGFDADYTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  G+
Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+  VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 420 RHWVPEIKRVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
 gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
          Length = 476

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPES 175

Query: 190 PSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S               I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
 gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
          Length = 469

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SAFAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
 gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
          Length = 469

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 279/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+L ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
 gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
          Length = 589

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 172/486 (35%), Positives = 256/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   +  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L++K I           +    +   C +     +F N +YE++E+RR+  L +  
Sbjct: 160 LKSELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLC 219

Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
             + I   + DD+ ++ PG++     + Y VYTP+ ++ +  L Q               
Sbjct: 220 AEQAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANA 279

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +      +  +  +   Q    M+P GE  A+  LRKF  EK   Y +
Sbjct: 280 GDARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHD 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      K+   + L    +G  +W++E+ WR+FY+
Sbjct: 340 KRDFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASNNGGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKAL 579

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 580 ERYKKA 585


>gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
 gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
          Length = 480

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 191/484 (39%), Positives = 273/484 (56%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ AC       I + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHACQQ--GPSIGLVILSPEQWKQHDDAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++QK L+   I         ++D+ +++  +  +  +  ++ N +   NE++RDK ++
Sbjct: 59  LKELQKELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQ 118

Query: 125 KRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L         F D  + P  SI N + Q Y+V++ F+KA    L  + L        +
Sbjct: 119 DSLNKESKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHK 178

Query: 184 LTGPVTPSNIPR----------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                      +          F     +    ++P+GE  AL  L +F ++ V +Y  +
Sbjct: 179 QNEISLEFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P + GTS+LSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H
Sbjct: 239 RDFPHVHGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   T+KI+WN +   L+AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPYVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIS 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FDP G +IR W+ EL ++  + IH P+S  +K +LSLNYP PIVD K+     +  
Sbjct: 419 QSQKFDPNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKHI 480


>gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
 gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
          Length = 500

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 197/483 (40%), Positives = 276/483 (57%), Gaps = 15/483 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLL 66
            L+W R DLR+ DN+AL AAC  + A  +A   ++IATP QW++H ++  Q  FI   + 
Sbjct: 22  ALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI F+  Q   F D   ++  YC QQ + ++F        E+   +  +  
Sbjct: 82  LLAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFA---GSEPEINEQQRDQAC 138

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +Q  +     D+  LL PG++LN +  MYKV+TPF +   +  + A    LP+P     G
Sbjct: 139 IQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV     P FF++  +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +S
Sbjct: 197 PVLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSIS 256

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGV+SPRQC   L   F ++++   S A +WLNEL WREFYRHL+  +P +     
Sbjct: 257 PYLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHN 316

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL
Sbjct: 317 FNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR
Sbjct: 377 IDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGSFIR 436

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS-------LNYPLPIVDHKKACHHTLNQYYAAKK 479
            +LPEL +   + +H P +    +            YP  IV+H  A    L      KK
Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARALTVLGVLKK 496

Query: 480 QSL 482
            + 
Sbjct: 497 ATA 499


>gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102]
          Length = 587

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 250/486 (51%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN+AL  A      +   +I ++I +P+ +  H  S  +  FI  +L  
Sbjct: 96  VHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEI 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L+   I              + +     Q     LF N +YE++E+RR+  L   L
Sbjct: 156 LKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELRREANLVHDL 215

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---------LVQADLRSL 177
                  +   D+ ++PPG + + +   Y VY+P+ ++ + +         L     ++ 
Sbjct: 216 AENGKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAHIHADLELLELFDPPNKNP 275

Query: 178 PVPAIRLTGPVTP-----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +             +  +      +    ++P GE  A   L KFC+EKV  Y  
Sbjct: 276 GTARKQFKDLFECAVPEAPSNKQLTKEEKRRFHSLWPAGESAAKERLEKFCEEKVGGYSN 335

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
            R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY
Sbjct: 336 NRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGIRVWISEVAWRDFY 395

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KP+ P    I W+ +     AW +G TGFPI+DAAMRQLN  G+MHN
Sbjct: 396 KHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDAAMRQLNHNGYMHN 455

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 456 RCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 515

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHT 470
            +Q ++FDP+G +IR W+PEL ++ ++ IH P+            YP PIV+HK      
Sbjct: 516 LLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYPKPIVNHKDCRDRA 575

Query: 471 LNQYYA 476
           L+ Y  
Sbjct: 576 LDAYKE 581


>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
 gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
          Length = 469

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  ++  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWGVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +P  GA  WL+ELIWREFY+HL+A  P++    
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSKSL 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
 gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
          Length = 481

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 153/481 (31%), Positives = 226/481 (46%), Gaps = 19/481 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R+DLR+ D   L AA       VI VF+          +      +++ SL  + 
Sbjct: 5   SLYWFRHDLRLADLPGLIAAAKA--GTVIPVFVWDEALGGDWSLGGASQWWLHHSLQSLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
             L+  G      +     ++ + +     +     +F +RQY+      +  ++   + 
Sbjct: 63  ADLNGLGSRLILRR----GETSKVIAKLLEETGAQNVFASRQYQPWAADTENAVKAVTES 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRL 184
                K +  ++L  P +I       +KV+TPF +A ++       + +P          
Sbjct: 119 AGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQ 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +           + ++  GE  A   LR F    V  Y   RD PA   TS+
Sbjct: 179 SDALNTWQLCPKTPNWATGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTSR 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +SPRQ W    +          S    +L+E+ WREF  HL+A +P++   
Sbjct: 239 LSPYLKFGEISPRQIW-WTAQNTKQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMPD- 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K + P  E   W      L AW+QG TG+PIIDA MR+L   G+MHNR+RM+ ASFL K 
Sbjct: 297 KAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTKH 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ WR+GE++F   LLD DLASN   WQW   +G D+ PYFRIFNP  QG++FD  G +
Sbjct: 357 LLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGMY 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            R W+PEL  +P +Y++ P    +        +L   YP PIVDH+ A    L  Y   K
Sbjct: 417 TRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATLK 476

Query: 479 K 479
            
Sbjct: 477 N 477


>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 476

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
 gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
          Length = 470

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 171/490 (34%), Positives = 248/490 (50%), Gaps = 29/490 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           MK        LVW R DLR  D+ A  +A      +V   F+   E          R+ H
Sbjct: 1   MKKEK----ALVWFRRDLRDHDHAA-LSAALAEAQQVYCAFVFDSEILDPLPTRHDRRVH 55

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI  SL+++  +L  +G             +++ + +   +  V+ +F NR YE +  RR
Sbjct: 56  FIRESLVELDAALRARGGGLIIRH----GQAVDEIPALARRLGVSAVFTNRDYEPSAKRR 111

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + ++L++  I      D  +     +L  A + + V+TP++ A ++ L  AD  + P
Sbjct: 112 DAQVARQLRNDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWP 171

Query: 179 VPAIRLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +            P    +     G   A  +   F ++++  Y   RD P
Sbjct: 172 CDGRLAGQELAGIPTLEEIGFTPTDLAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S RQ   +      D          +WL+ELIWR+FY  ++  
Sbjct: 232 AVKGVSYLSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDH 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V  G  F P  + I+W        AW +G TG+P++DAAMRQLN  GWMHNRLRM+ 
Sbjct: 282 FPHVA-GHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVV 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL +DWR+GE+YF  QL D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++
Sbjct: 341 ASFLTKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEK 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD +G FIR ++PEL  V  +YIHAP              +  +YP PIVDH  A   TL
Sbjct: 401 FDAEGKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETL 460

Query: 472 NQYYAAKKQS 481
            +Y   KKQ+
Sbjct: 461 ARYAVVKKQA 470


>gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23]
          Length = 587

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 253/486 (52%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN+AL  A   +      +I ++I +P+ +  H  S  +  FI  +L  
Sbjct: 96  IHWFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEI 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  I              + +     Q     LF N +YE++E+RR+  +   L
Sbjct: 156 LKRDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREANMVHDL 215

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---------LVQADLRSL 177
                  +   D+ ++PPG + + +   Y VY+P+ ++ + +         L     ++ 
Sbjct: 216 AENGKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPNKNP 275

Query: 178 PVPAIRLTGPVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                R       +      +        +    ++P GE  A   L KFC+E++  Y +
Sbjct: 276 GTARKRFKDLFDCAVPEAPSNKELTKEEKRRFHSLWPAGENAAKERLDKFCEERIGGYSD 335

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
            R+IPA  GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY
Sbjct: 336 NRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEVAWRDFY 395

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KP+ P    I W+ +    +AW +G TGFPI+DAAMRQLN  G+MHN
Sbjct: 396 KHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNHNGYMHN 455

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 456 RCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 515

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470
            +Q ++FDP+G +IR W+PEL ++  + IH P+            YP PIV+HK      
Sbjct: 516 LLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHKDCRDRA 575

Query: 471 LNQYYA 476
           LN Y  
Sbjct: 576 LNAYKE 581


>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 483

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 149/485 (30%), Positives = 228/485 (47%), Gaps = 24/485 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+TD   L+AA   S   VI  FI   E   +  +      +++ SL  + K
Sbjct: 8   IYWFRRDLRLTDLPGLHAAL-ASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTK 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S++++G      +     D+   L++   +     ++ +  YE +    +K L + L   
Sbjct: 67  SVAEQGGNLLVRR----GDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKS 122

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
                    ++   P  + N +   +KV+TPF +  +Q L    L               
Sbjct: 123 GAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPSMPLPQKTTFTTNSFLQHS 182

Query: 187 ----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                     +              +  GE  A   L++F    +  Y + RD PA   +
Sbjct: 183 LTGLSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARDAS 242

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +   G +SPRQ W  + +         +     +L+EL WR+F  HL+  +P + 
Sbjct: 243 SRLSAHFHWGEISPRQAWAAVNKAP----GSNEKDQHKFLSELGWRDFNHHLLFHFPHIA 298

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF P   ++ W       +AW +G TG+PI+DA MR+L   G+MHNR+RMI ASFL 
Sbjct: 299 D-RPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMICASFLT 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G  +F   L+D DLA+N+GGWQW A  G D+ P+FRIFNP +QGK+FD  G
Sbjct: 358 KHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKKFDGDG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R WLPEL  +  + +  P              L  +YP PIVDHK+A    L+ Y A
Sbjct: 418 EYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEARVAALDAYDA 477

Query: 477 AKKQS 481
             K S
Sbjct: 478 VSKAS 482


>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 478

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 160/487 (32%), Positives = 251/487 (51%), Gaps = 25/487 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M++    +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ 
Sbjct: 1   MTMQKKIIVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSAAKWWLHH 54

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +++ VQK L   G  F          + E + S   Q  +T +++N  Y+ + ++ ++ +
Sbjct: 55  AIIDVQKQLKALGSTFIIRN----GKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKM 110

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  L+ + +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +     
Sbjct: 111 KMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKW 170

Query: 183 RLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             + P +                 I+ ++   E+ A    +KF   K+  Y E RD P  
Sbjct: 171 GSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 230

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFY 298
              S L+PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  Y
Sbjct: 231 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  A
Sbjct: 291 P-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++F
Sbjct: 350 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472
           D  G +IR W+PEL ++P +YIH P    +        +L   YPLP+VDHK A    L 
Sbjct: 410 DKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALC 469

Query: 473 QYYAAKK 479
            Y + K+
Sbjct: 470 AYKSMKE 476


>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
 gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
          Length = 469

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 206/474 (43%), Positives = 281/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    P       +     +    +     LR+FC+E+V  Y + RD PA +GTS 
Sbjct: 179 SALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLREFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL       + +   GA +WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWAYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS
           112818]
          Length = 589

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 171/490 (34%), Positives = 249/490 (50%), Gaps = 19/490 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I                +   C      +LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
             + I    +D   +  PG +     + Y VYTP+ ++ +  L Q               
Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +   T  N  +      +    M+P GEQ A   LR+F  +    Y  
Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579

Query: 472 NQYYAAKKQS 481
            +Y  A + S
Sbjct: 580 AKYKKAAQGS 589


>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 469

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 245/477 (51%), Gaps = 22/477 (4%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K L 
Sbjct: 2   FQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKKQLE 55

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VI 132
             G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+ +I
Sbjct: 56  ALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--- 189
           CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+   
Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                         ++ ++   E+ A    ++F   K+  Y E RD P     S L+PYL
Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           S G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     KP  
Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YKPLN 290

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK LL+ 
Sbjct: 291 KSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIP 350

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +IR W
Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKW 410

Query: 429 LPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 411 VPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467


>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
 gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
          Length = 476

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 159/490 (32%), Positives = 248/490 (50%), Gaps = 27/490 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+    M       + D R+ DN AL+ A  + +  V+ V++          I +    +
Sbjct: 1   MQNKIIMM-----FQKDFRLYDNPALFEAAQSGE--VVPVYVQDETF----SIGSASKWW 49

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +++ VQK L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ +
Sbjct: 50  LHHAIIDVQKQLEALGSTLIIRK----GNTQEEILSLIEQLNITAVYWNSCYDPDRLKSN 105

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + ++  L+ + +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +  
Sbjct: 106 QKMKIVLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQR 165

Query: 180 PAIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                + P +                 I+ ++   E+ A    +KF   K+  Y E RD 
Sbjct: 166 IKGGSSLPASLSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDF 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLM 295
           P     S L+PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+
Sbjct: 226 PNENAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH P    +         L   YPLP+VDHK A   
Sbjct: 405 EKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
 gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
          Length = 476

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----PMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRK----GNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKSMKE 474


>gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 465

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 196/469 (41%), Positives = 269/469 (57%), Gaps = 5/469 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR+ DN AL A+         AV+      W +H +S  +   I   L ++
Sbjct: 1   MNLMWFRADLRVADNPALCASMQA--GPTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L+   +      CSNF      L S+  +  ++ +++N ++EINE    K +   LQ
Sbjct: 59  ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   SF+D   + PG +   +   YKV+TPF+K  +           P P  +   P+
Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           T S  P            ++P GE  A   L +F K+ +  Y E RD PA+ GTS LSPY
Sbjct: 179 TSSIAPLQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSPY 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G +S RQC +   ++      +   GA +WL+EL+WR+FYRHL+  YP +C  K F 
Sbjct: 239 LAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQ 298

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
             TE++ W  DS LL AW++G TGFPI+DAAM+QL   GWMHNRLRMITA FL K L VD
Sbjct: 299 QNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFVD 358

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE++FM  L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH+
Sbjct: 359 WRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHY 418

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           LPEL N+  + IH+P     +   S  YP PIVDH  A   T   +   
Sbjct: 419 LPELKNLSNKAIHSPSVIEAE---SCGYPKPIVDHSTAVKQTKAWFKEL 464


>gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
 gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
          Length = 499

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 170/494 (34%), Positives = 249/494 (50%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVW R DLR TDN ALY A  + + +V  VF+            W+          R+
Sbjct: 13  TGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQPQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
              I  +L ++ ++L   G          + D  + +     +  V  +F N  YE   +
Sbjct: 72  IELILGALGELDEALRANGGGLIVL----YGDPADLVPKLADELGVDAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + + L        +F D V+     +L    + + V+TP++ A ++ L   DL+ 
Sbjct: 128 ARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLTAFDLKP 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV +        PS + R           P    +   P G   A  +L      ++  
Sbjct: 188 YPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLD-DFATRIDS 246

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++RD PA +G S LS +L  G +S R      +      L     G+ +WL+ELIWR+
Sbjct: 247 YKDRRDFPAAKGPSYLSIHLRFGTVSIRTL---ARLAHEMSLQPDGEGSTTWLSELIWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN  
Sbjct: 304 FYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAEARARTLARF 497


>gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
 gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
          Length = 473

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 223/483 (46%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN +LY A       V+ V+I          +      +++ SL  + +
Sbjct: 7   IHWFRQDLRLEDNPSLYYAAL--KGSVLPVYILDDRNAGDFRMGGANRWWLHHSLESLNR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +  +          D +E L +       TK+++NR YE   + RD  L+ +L+ +
Sbjct: 65  SLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLREQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +S++ S+L  P  +       YKV+TPF +    +     +       +    P  
Sbjct: 118 GITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAASPRMPLPLPVKLDCPSPPE 177

Query: 190 PSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            S               + ++P + IGE  AL  L  F K  +  Y E RD PA    S+
Sbjct: 178 ESLPLEALGLLPRIRWDRQLEPHWTIGENGALERLAIFLKHGLPGYREGRDFPARPNVSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP L  G +SP Q W+                   + +EL WREF   L+   P +   
Sbjct: 238 LSPSLHFGEISPNQAWHGAIAAGSG------IDLDHFQSELAWREFSYSLLYHNPGLPEK 291

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  ++  W ++   L  W+QG TG+PI+DA MR+L   G+MHNR+RM+  SFLVK+
Sbjct: 292 N-LQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAGSFLVKN 350

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W  GE +F   L D DLA N+  WQW A  G D+ PYFRIFNP  QG++FD  G++
Sbjct: 351 LLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKFDADGSY 410

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            R +LPEL  +P +Y+ +P                  YP PIVD K +    L  Y   +
Sbjct: 411 TRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSRRQALEAYALTR 470

Query: 479 KQS 481
             S
Sbjct: 471 NHS 473


>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
 gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
          Length = 482

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 160/479 (33%), Positives = 240/479 (50%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++ SL  +  
Sbjct: 10  ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++             +++  L S   Q     +F+NR+Y+   +  D  +E  L+ +
Sbjct: 69  SLRKRRGGLLL----ASGEALGVLRSLIRQSDADAVFWNRRYDPPGISIDAHIEHELEKQ 124

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLT 185
            I        LL   S L   +   Y+VYTPF +AL +++         +      +  +
Sbjct: 125 AIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSKLQLASKLPGS 184

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +             ++  GE+ A   LR F ++++  Y E RD PA   TS L
Sbjct: 185 EKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSML 244

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L++G +SP + W+  +     L          +  E+ WR+F  HL+A +P +    
Sbjct: 245 SPHLALGEISPARIWDATRGLSKHLPAA---DIVHFRKEIAWRDFSYHLLAHFPRLATAN 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 ++ EW        AW +G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KDL
Sbjct: 302 W-DDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           +VDWR GE +F   L+D D A+N   WQW A +G D+ P+FR+FNP +QG++FDP G F+
Sbjct: 361 MVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFV 420

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R  +PEL  +  +YIH P              L   YP P+VDH  A    L  Y A +
Sbjct: 421 RSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 479


>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
 gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474


>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
 gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
          Length = 475

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 238/479 (49%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D R+ DN AL+ A    +  V+ V+I     + +  + +    +++ +L   + 
Sbjct: 6   IVWIRKDFRLVDNPALFHAAK--EGMVVPVYIHDD--YEESSMGSASKWWLHHALNDFKN 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+ +        +     +  + L     Q     +++NR+YE + ++RDK L+     +
Sbjct: 62  SIEKIQGTLIVQK----GNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQ 117

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186
            I     +  L   P  I       YKV+T + KA  ++ V + ++    +   +  +  
Sbjct: 118 QINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVES 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                          + I   +   E+ A+ + + F K K+ +Y + RD PA    S LS
Sbjct: 178 LSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFLS 237

Query: 247 PYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PY + G LS R  ++ L+ +         +  A  ++ +LIWR+F   L+  +P     +
Sbjct: 238 PYFATGQLSARVLYHYLRTKAEKVSSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTT-E 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RMI ASFLVK L
Sbjct: 297 PLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLVKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q ++FD +G +I
Sbjct: 357 LIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + WLPEL ++P+ YIH P              L+  YP PIVDHK A    L  Y   K
Sbjct: 417 KKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARERALEHYQHIK 475


>gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
 gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
          Length = 498

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 193/486 (39%), Positives = 271/486 (55%), Gaps = 17/486 (3%)

Query: 5   TAMSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           T MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F  
Sbjct: 17  TCMSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYL 74

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK 
Sbjct: 75  RQLRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKT 134

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQAD 173
           ++  L  H      F D  + P  SI N + Q Y+V++ F+KA    L            
Sbjct: 135 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 194

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYV 231
            +   VP   L G     +          + +    +P+GEQ AL  L +F ++ V +Y 
Sbjct: 195 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYK 254

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY
Sbjct: 255 VERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFY 314

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHN
Sbjct: 315 QHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHN 374

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP
Sbjct: 375 RVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNP 434

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +
Sbjct: 435 IAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAI 492

Query: 472 NQYYAA 477
             +   
Sbjct: 493 ETFKNI 498


>gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
 gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
          Length = 595

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 249/486 (51%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN AL  A     ++   +IA++  +P+ W  H  +  +  F   SL  
Sbjct: 104 VHWFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEV 163

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  I        +     + + S   +   + L+ N +YE++E+RR+  L + L
Sbjct: 164 LRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLL 223

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +   D+ ++PPG +     + Y VY+P+ +A +++L        P+       
Sbjct: 224 AENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNP 283

Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     FD                 Q +  M+P GE  A   L  F K ++  Y  
Sbjct: 284 ASAREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAA 343

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291
           +R+ PA  GTS +S +L+ G LS R   +   +      L     G  +W++E+ WR+FY
Sbjct: 344 KRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFY 403

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQL   GWMHN
Sbjct: 404 KHVLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHN 463

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KD L+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR+FNP
Sbjct: 464 RCRMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNP 523

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  +  + IH P+      +     YP P+VDHK      
Sbjct: 524 LLQSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERA 583

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 584 LKAYKE 589


>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----QEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB102]
 gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
          Length = 476

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ VQK
Sbjct: 6   IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ ++++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTQEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            I+ ++   E+ A    +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIRWTSHIELIWEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LL  D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         +   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
 gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
          Length = 477

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 236/479 (49%), Gaps = 23/479 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC   +  +I V+I   +   Q  +      +++ +L  +  S
Sbjct: 1   MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADLNAS 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q   ++Q        D++  L     Q     + +NR YE   + RD  ++  L+   
Sbjct: 59  LKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESG 111

Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-----T 185
           +     +  L   P  +L      YKV+TP+ +    + V       P   +++      
Sbjct: 112 LDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVDSGD 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +          +++   + I E  A   L +F   ++  Y E R+ PA Q  S+L
Sbjct: 172 SLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNVSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G +SP   W R  E      I  +    ++++EL WREF  +L+  +P +    
Sbjct: 232 SPYLHFGQISPNSAWYRAAEA--GAFINNEQSLDTFMSELGWREFSYYLLYHWPKLPTEN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               +      N     L AW+QG TG+P++DA MR+L + G+MHNR+RM+  SFLVK+L
Sbjct: 290 LQTRFDLFPWANNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVKNL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W  GEE+F   L+D DLASN+  WQW A  G D+ P+FRIFNP  Q ++FD QG++I
Sbjct: 350 LIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSYI 409

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL ++P +YIHAP     +       ++ +NYP P+VD K +    L  +   K
Sbjct: 410 RRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALEAFAVTK 468


>gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
 gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
          Length = 499

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 193/482 (40%), Positives = 276/482 (57%), Gaps = 14/482 (2%)

Query: 10  HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q  FI   + 
Sbjct: 22  ALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI+F+  Q   F D   ++  YC QQ ++++F        E+   +  +  
Sbjct: 82  LLAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPEINEQQRDQAC 138

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +Q  +     ++  LL PG++LN +  MYKV+TPF +   +  + A    LP+P     G
Sbjct: 139 IQVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P+I GTS +S
Sbjct: 197 PVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPSIDGTSSIS 256

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     
Sbjct: 257 PYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHN 316

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL
Sbjct: 317 FNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR
Sbjct: 377 IDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIR 436

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LPEL +   + +H P +    +           YP  IV+H  A    L      KK 
Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRALTVLGVLKKA 496

Query: 481 SL 482
           + 
Sbjct: 497 AA 498


>gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
 gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
          Length = 473

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 194/476 (40%), Positives = 278/476 (58%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        +A+++ +P QWR H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATER--GPTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  I     +   +D + + +   C Q +V  + +N +Y INE RRD    K L+
Sbjct: 59  RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PG+IL  +   ++V++ F+K  +++L ++          +    
Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAALK 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    F+   +A+   +P GE +A   L +F  E +  Y++ RD+PA+ GTSQ
Sbjct: 179 IHSDPIPQDIDGFEKTPRALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPAMPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRFDPEGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHWLPEL ++  + IH P    D      +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWLPELRDIDEKTIHGPMKSTDLF-AGNSYHNPIVDLGSSRQRALEAFKGLPRR 473


>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
 gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
          Length = 476

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
 gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
          Length = 469

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 202/473 (42%), Positives = 277/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 511

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 184/481 (38%), Gaps = 27/481 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  L AA H  +  +I ++I  PE W+Q  ++ R  HF +  L+ + K
Sbjct: 7   IVWFKRDLRVQDHAPLLAASHT-NRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G             +++ +     +     LF + +          +    L   
Sbjct: 66  DLTDLGQPLII----AVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAGLCSD 121

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +           P   ++              + +   +     + +P P          
Sbjct: 122 LE----IPFHEYPSNGVVRRLKSRDVWSRIRNERMADRISPKPTKLVPFPKCASAPLPPK 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSPY 248
            +      +       +   G   A+  L+ F   +   Y+     P       S+LS +
Sbjct: 178 HD----PIFGAALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEMYCSRLSAH 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L++G LS R+    + +    L             ++ + + WR  +   +   PS+   
Sbjct: 234 LALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKIEDQPSIETC 293

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +    E   +    QAW  G TG+P IDA MR L + GW+  R+R +  SF    
Sbjct: 294 CMHPAFEGIREDEHNDAYFQAWAAGQTGYPFIDACMRNLVSEGWITFRMRAMLVSFASYH 353

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWRI  ++      D +   +    Q    +G   +   R++NP  Q +  DP G F
Sbjct: 354 LWLDWRITGKHLARVFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSQEHDPTGKF 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL  VP ++IH P  W        + +L  +YP PI+DH+ A      +    +
Sbjct: 412 IRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAARQAKKRISDVR 471

Query: 479 K 479
           K
Sbjct: 472 K 472


>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
 gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
          Length = 501

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 188/479 (39%), Positives = 266/479 (55%), Gaps = 9/479 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLRNDLR+ DN AL+AA       VIAV++       +  I+  +  F    L  +
Sbjct: 2   TALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++  I  Q  + +   +    L        ++  F+N +Y ++E+ RD+ + + L+
Sbjct: 61  TTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLR 120

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +  K   D V++PPG + N A   YKV+TP+++  +Q      LR +  PA +   P
Sbjct: 121 AQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALP 180

Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++             + +   +P GE  A   L++F  + + +Y  QRD+PA+ GTS
Sbjct: 181 CPSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG LSPRQ    +            +G  +W++ELIWREFY+HL+  YP VCM
Sbjct: 241 GLSPYLAIGALSPRQALAAVLSRT-GGDWNANAGVSTWISELIWREFYQHLVVDYPQVCM 299

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +     TE   W +       W+QG TG PIIDAAMRQLN  GWMHNRLRM+ A FL K
Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP  Q +RFDP+G 
Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           FIR W+PEL  +  + IHAPH  L  +     YP P+VD   +   T+  + +  +   
Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVDLGASRKATIALFASLGQAPA 476


>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 586

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 167/489 (34%), Positives = 255/489 (52%), Gaps = 19/489 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A       +  +I ++I +P+    H  S  +      +L Q
Sbjct: 96  VHWFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQ 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  I           D  + +   C +  V  +F N +YE++E+RR+  L +  
Sbjct: 156 LKRDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMC 215

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I  ++  D+ ++ PG++ +   + Y VY+P+ +A + +L +               
Sbjct: 216 AQNGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNP 275

Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +  + F              D   +    ++P GE  AL  L KF +E+V  Y +
Sbjct: 276 GNARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYAD 335

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R++   Q TS LSPY + G LS R      ++     L +   G  SW++E+ WR+FY+
Sbjct: 336 ARNMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYK 395

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D +   AW +G TGFPI+DAAMRQ+    WMHNR
Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNR 455

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 456 ARMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR WLPEL  +    +H P++         N YP PI++H K+    L
Sbjct: 516 RQSERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQAL 575

Query: 472 NQYYAAKKQ 480
            ++  A + 
Sbjct: 576 ERFKRASEN 584


>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
 gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
          Length = 481

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 191/473 (40%), Positives = 270/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL A         +AV++ +PEQW  H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNTALSA--AAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + ++ + + L   C Q +V  L +N++Y I+E RRD  + + LQ
Sbjct: 59  STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           H  I        L   PGS+L  +   ++V++ FRK     L  A    +  P  +L   
Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P+    F  P QA+  ++P G+  A   L KF  E+++YY  +RD PA  GTSQ
Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +               GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLP+L  +  + IH P +      +   YP PIVD  ++    L  + A 
Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKAL 470


>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 485

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 239/487 (49%), Gaps = 18/487 (3%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  ++W R DLR+TDN AL AA  NS   +I V++          +      ++  S
Sbjct: 2   SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYLRETGAGAPREMGGASRWWLNKS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G             + + + +   +     +F+NR+Y + E   D  ++
Sbjct: 61  LASLGASLEAIGGKLTLRTGP----AEKIIPALVEETGAAAVFWNRRYGLPERETDAAIK 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP 180
           K L+   + C+SF+  +L+ P  +   +   YKV+TPF +AL                  
Sbjct: 117 KTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYKPPAFIPSPKKIAG 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A   T  +    +          I   +  GE  A   L  F    V  YV  R++P + 
Sbjct: 177 ASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPGVS 236

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G + P Q W  ++   ++     +  A  +L+E+ WREF   L+ + P
Sbjct: 237 TGTSRLSPHLRFGEIGPAQIWRAVRAR-LEAQQADEDSARVFLSEIAWREFSYTLLYYNP 295

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++     +     ++ W KD     AW +G TG+PI+DA MR+L   GWMHNR+RMI AS
Sbjct: 296 ALATEN-YNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIVAS 354

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+ W+ GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP  QG++FD
Sbjct: 355 FLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQKFD 414

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
             G ++RHW PEL  +P +Y+HAP           +  L  +YP PI+DH       L+ 
Sbjct: 415 EDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRALDA 474

Query: 474 YYAAKKQ 480
           Y A K++
Sbjct: 475 YKAMKEE 481


>gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 446

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 230/433 (53%), Positives = 306/433 (70%), Gaps = 4/433 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQ 438
           R WLP L ++P +
Sbjct: 418 RQWLPALRDMPWK 430


>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
 gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
          Length = 476

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YI+ P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474


>gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
 gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
          Length = 471

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 203/475 (42%), Positives = 278/475 (58%), Gaps = 10/475 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE  RD+ L  R
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIR 183
           L    +     +D  +  PG +LN     +KV+TPF+KA +++ +   +       P + 
Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFIPPQIIKTSAAQPVVL 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +     +      +     + +  Q     LR+FC E+V  Y EQRD PA  GTS
Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEAWSVDSQQIRETLRRFCHEEVDRYHEQRDFPATAGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG +S RQC  RL            +G   WL+ELIWREFY HL+ F P +  
Sbjct: 240 VLSPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+ F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 GQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGE 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           F++HWLPEL  VP++++H P  WL    L  +YP P+VDHK+    TL+ Y  AK
Sbjct: 416 FVKHWLPELAEVPSKFVHQPWKWLGHMRL--DYPAPMVDHKQEREITLSLYTQAK 468


>gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
 gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
          Length = 503

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 196/492 (39%), Positives = 278/492 (56%), Gaps = 20/492 (4%)

Query: 6   AMSV------HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISAR 56
           +MS+       L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  
Sbjct: 17  SMSIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPI 76

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           Q  FI   +  + + L+  GI F+  Q   F D   ++  YC QQ ++++F        E
Sbjct: 77  QLDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPE 133

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           +   +  +  +Q  +     ++  LL PG++LN +  MYKV+TPF +   +  + A    
Sbjct: 134 INEQQRDQACIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAI 191

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           LP+P     GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD 
Sbjct: 192 LPLPVPAPLGPVLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDF 251

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+ 
Sbjct: 252 PAIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLV 311

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+
Sbjct: 312 AFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMV 371

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q +
Sbjct: 372 VASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSE 431

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH------APHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           +FDP G+FIR +LPEL +   + +H       P  +         YP  IV+H  A    
Sbjct: 432 KFDPDGSFIRKYLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARA 491

Query: 471 LNQYYAAKKQSL 482
           L      KK + 
Sbjct: 492 LTVLGVLKKAAA 503


>gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 476

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQ+
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVQR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     + +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEAVGSTLIIRK----GNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I CK F+  +LL P  I       YKV+TPF  A  + +V   +  +       + P +
Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L ++  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
 gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
          Length = 468

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 276/475 (58%), Gaps = 14/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR+DLR+ DN+AL AA        +A+++ +P QWR H  +  +  F   +L ++ 
Sbjct: 3   QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+  G+     +   +D++   L   C +Q + ++  N +Y ++E RRD  +E+ LQ 
Sbjct: 61  HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + +  +   D +LL P S+   +   ++++  FR+A    L  +      +P  +    V
Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180

Query: 189 TPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             + +P     F  P +++  ++P GE  A   L +F + ++  Y E RD PA  GTS+L
Sbjct: 181 VGNAVPAALEGFATPPESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSPRQC + +           +  A +W +EL+WREFY+H++A +P V MG+
Sbjct: 241 SPYLAAGVLSPRQCLHAVLR----TGGFDRPEASAWFDELLWREFYKHILAGHPRVSMGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                TE + W      L AW+QG TGFP+IDAAMRQL   GWMHNRLRM+ A FL K+L
Sbjct: 297 ALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSKNL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q +RFDP+G FI
Sbjct: 357 LIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGRFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL ++  + IHAP   L        YP PIVD   +    L  + A +++
Sbjct: 417 RQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRR 467


>gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
          Length = 474

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 158/487 (32%), Positives = 236/487 (48%), Gaps = 32/487 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC   + K+I ++I          +    + +++ SL  +   
Sbjct: 1   MWFRQDLRVKDNPALNAACD--EGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQHR 130
           L       +  +     D    + +         +++NR YE  ++ RDK + ++ L + 
Sbjct: 59  L---NGHLKVFK----GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               S + S+L  P  +L      Y+V+TP+ +    N+        P   I        
Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171

Query: 191 SNIPRFFDY------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                                        +  GE  A   L+ F +     Y + RDIP+
Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LSP+L  G +SP Q W  +K+ F     K      ++L+EL WREF  +L+  +
Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFETSEDK---SIDTYLSELGWREFSYYLLYHF 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++     F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI  
Sbjct: 289 PTIPTKN-FNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL+ W+ GE +F   L+D DLASN  GWQW A TG D+ PYFRIFNP +QG++F
Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D QG ++R + PEL ++P +YIH P              L   YP PIVD K +    L+
Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALD 467

Query: 473 QYYAAKK 479
            + A K+
Sbjct: 468 AFQALKE 474


>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
          Length = 480

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 185/479 (38%), Positives = 264/479 (55%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ AC       I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHACQQ--GPSIGLIILSPEQWKIHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK++++ L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQ 123

Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +      F D  + P  SI N + Q Y+V++ F+KA    L  + L        +     
Sbjct: 124 QSKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYP 183

Query: 189 TPSNI----------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +             F     +    ++P GE  AL  L  F  + + +Y  +RD P 
Sbjct: 184 QSFSNIKSLGLEDIEAFFDSSIPKEQQDLWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL++G+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+ I+W  +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+     +  +   
Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKETRIKAIETFKNI 480


>gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
 gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
          Length = 589

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 20/485 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR++DN +L  A     ++   +IA++I +P+ +  H  +  +  F   +L  
Sbjct: 97  VHWFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAHLTAPIRVDFTLRTLEI 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           ++  L++  I              + +     +   T LF N +YE++E  R  KL+   
Sbjct: 157 LKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANMEYEVDELRREAKLVRTF 216

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  ++  D+ ++PPG +     + Y VYTP+ ++ ++++ +   R           
Sbjct: 217 ADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDRLELFDHPNKNP 276

Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     F                  +    +FP GE  A   L KFC   +  Y +
Sbjct: 277 SSAKERFGNLFASEIPEEVPNKTLGAEEKKRFRALFPAGEHAARERLDKFCDGSISSYAD 336

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP   GTS LS +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 337 RRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGNGGIQTWISEVAWRDFY 396

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI+DAAMRQ+  +GWMHN
Sbjct: 397 KHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPIVDAAMRQMIHVGWMHN 456

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR+GE +FM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 457 RCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 516

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  V  + IH P+            YP PIV HK      
Sbjct: 517 LLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKKGYPEPIVAHKDVRERA 576

Query: 471 LNQYY 475
           L +Y 
Sbjct: 577 LTEYK 581


>gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 486

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 193/492 (39%), Positives = 281/492 (57%), Gaps = 29/492 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L 
Sbjct: 1   MS-DILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLK 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q +  L++ GI   + + ++F+D    L + C Q   T ++ N + E   V      ++ 
Sbjct: 58  QFESQLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPE---VDEQLRDKRL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180
           +   +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +     P      
Sbjct: 115 IATGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGS 174

Query: 181 -----------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                                           +     +     +P+ +     ++  F 
Sbjct: 175 AQAGSSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFL 234

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             KV  Y   RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLN
Sbjct: 235 ANKVNDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLN 294

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           ELIWR+FY+HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL
Sbjct: 295 ELIWRDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQL 354

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ 
Sbjct: 355 VETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQ 414

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFRIFNP  Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+H
Sbjct: 415 PYFRIFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEH 474

Query: 464 KKACHHTLNQYY 475
           K+A    L  + 
Sbjct: 475 KEARLRALAFFK 486


>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
 gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
          Length = 518

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 169/489 (34%), Positives = 242/489 (49%), Gaps = 29/489 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           + R+  FI AS+
Sbjct: 20  GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKADRRVEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     Q  V  +F N   E +   RD+ + K
Sbjct: 79  EELRGALREAGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182
            L Q       F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPYFG 194

Query: 183 ----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                      P+       +    +  +      +    L    +E++  Y  +RD PA
Sbjct: 195 ALARPPEALAQPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPA 254

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R    R     +        GA +WL+EL+WR+FY  ++   
Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHAAMLRGS----RGAATWLSELVWRDFYFMILHHR 310

Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRM 370

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL +DWR GE+YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 430

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +YIHAP +            L   YPLPIVDH  A   
Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARAA 490

Query: 470 TLNQYYAAK 478
           TL++Y   K
Sbjct: 491 TLDRYAVTK 499


>gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
 gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
          Length = 473

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 165/479 (34%), Positives = 236/479 (49%), Gaps = 23/479 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S  LVW R DLR  D+ ALY A   S  +V  VF+   +   Q    + R+  FI+ S+ 
Sbjct: 4   STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L Q+G             +   +       +   +F N  YE + + RD  + ++
Sbjct: 63  ELKTALQQRGSDLIVLH----GSAQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQ 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAI 182
           LQ   I    + D  +     +L  A + Y V+TP++ A ++ +                
Sbjct: 119 LQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPVEHYLNK 178

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  P      F +    +  +      +    L     E++ +Y E RD PA++G 
Sbjct: 179 LAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFIERIKHYKEARDFPAVKGV 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +L  G +S RQ      +           GA +WL+ELIWR+FY  ++   P + 
Sbjct: 239 SYLSVHLRFGTISIRQLARTAMQIGG-------FGAETWLSELIWRDFYFQILHHNPQLE 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK F    E I +   + L  AW +G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLV
Sbjct: 292 AGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YF   L+D D ++NNGGWQWAASTG D+ P+FRIFNP  Q +RFD  G
Sbjct: 352 KDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDGHG 411

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
            FIR ++ EL     + IHAP     +        +  NYP PIVDH       L+ Y 
Sbjct: 412 KFIRKYVAELAQCNDKEIHAPWLMSAQRQSSINTVIGQNYPKPIVDHATQRERVLSLYK 470


>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 484

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 20/475 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  ++  +  LV  R DLR+ D+ AL AA     A V+ V+I   E   +  +      +
Sbjct: 1   MPLSSRAAPALVLFRRDLRLADHPALSAAAETG-APVLPVYILDDETPGRWRMGGASRWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +Y SL  +   L  +G            ++   L     +     + + R YE  +   +
Sbjct: 60  LYQSLRSLGADLEARGSRLVLRH----GETKRVLGELIEETGARSVLFTRGYEPYQRALE 115

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174
             L+  L+ R +  + F   +L+ P SI N A + ++V+TPF +AL Q       + A  
Sbjct: 116 GRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPATPLPAPQ 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +     +   +  +    +          I   +  GE  A   L  F +  +  Y  +R
Sbjct: 176 KLAAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFIEAALPSYRTRR 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P I GTS+LSP+L+ G + PRQ W+ ++           + A ++L E+ WREF  HL
Sbjct: 236 DEPGIDGTSRLSPHLAFGEIGPRQIWHAVQ--AAAEAAGDHAAADAYLREVGWREFSYHL 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +    PF P      W  D+  L+AW++G TG+PI+DA MRQL   GWMHNR+R
Sbjct: 294 LFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVR 352

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL+K LL  W+ G ++F   L+D DLA+N   WQW A +G D+ PYFRIFNP +Q
Sbjct: 353 MIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           G++FDP+G ++R ++PEL  +P   IH P +            L   +P PIVDH
Sbjct: 413 GEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIVDH 467


>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 511

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/485 (35%), Positives = 231/485 (47%), Gaps = 27/485 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR DLR+ D+ AL+ A  ++  KV   FI           + R+  FI+  ++++ 
Sbjct: 33  ALVWLRRDLRLDDHAALHHALRSAK-KVWCAFIFDTTILDALPRADRRVEFIHHGIVELD 91

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G            D ++ + +      V  +  NR YE   V RD  +   L H
Sbjct: 92  GLLRAHGSGLIVRH----GDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVRGALAH 147

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   S  D V+     IL  A   + V+TP++ A ++ L          P  R  G +
Sbjct: 148 AGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDG--YYLRAYPVQRHIGAL 205

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK-------FCKEKVYYYVEQRDIPAIQG 241
            P         P        P      LH              E++  Y + RD PAI+G
Sbjct: 206 APVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFLERIDRYADTRDFPAIKG 265

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +L  G +S RQ      E  V        GA  WL+ELIWR+FY  ++  +P V
Sbjct: 266 PSYLSVHLRFGTVSIRQLARLAHERMVGGS----RGAEVWLSELIWRDFYHQILHHHPRV 321

Query: 302 CMGKPFIPWT--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   +             L  AW +G TG+PIIDAAM QLN  G+MHNRLRM+ AS
Sbjct: 322 VTHCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNRLRMVVAS 381

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ PYFRIFNP  Q  RFD
Sbjct: 382 FLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPISQSLRFD 441

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            +G FIR +LP+L ++    IHAP              L  +YP+P+V+H +A   TL +
Sbjct: 442 AEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKLGRDYPMPVVEHAEARELTLAR 501

Query: 474 YYAAK 478
           + A K
Sbjct: 502 FAAVK 506


>gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
 gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa]
 gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
          Length = 642

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/498 (34%), Positives = 253/498 (50%), Gaps = 33/498 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  
Sbjct: 138 VHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEV 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L   GI           +    +         + LF   +YE++E+RR+  L K L
Sbjct: 198 LKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLL 257

Query: 128 QHRVICKSF-----DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                 +        D+ ++ PG++ + +   Y VY+P+ +A I+++ +           
Sbjct: 258 AEGEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLEIYEKP 317

Query: 183 RLTGPVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVY 228
               P T       F                       ++P GE  AL  L KFC E + 
Sbjct: 318 GPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIG 377

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIW 287
            Y E+R+IPA+QGTS LS + + G LS R      ++      L     G   W++E+ W
Sbjct: 378 KYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAW 437

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+H++  +P VCM KPF P    IEW+ +     AW QG TGFPIIDAAMRQ+ + G
Sbjct: 438 RDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTG 497

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRMI ASFL KDLLVDWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR
Sbjct: 498 YMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 557

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVP------TQYIHAPH----SWLDKNDLSLNYP 457
           +FNP +Q ++FDP G +IR W+ EL ++P         IH P+      + K      YP
Sbjct: 558 VFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGYP 617

Query: 458 LPIVDHKKACHHTLNQYY 475
            PIV+H  A    L+ Y 
Sbjct: 618 RPIVEHSGARDRALDAYK 635


>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
 gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
          Length = 476

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
 gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
          Length = 476

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEAF----SMGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   +  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL    I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            I+ M+   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FAVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYKSMKE 474


>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
 gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
          Length = 499

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/494 (35%), Positives = 249/494 (50%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVWLR DLR TDN ALY A  + + +V  VF+            W           R+
Sbjct: 13  TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A+L ++ ++L   G          + +  E +     +  V  +F N  YE   +
Sbjct: 72  IEFILAALGELDEALRADGGGLIVL----YGNPAELVPKLADELGVDAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  + +RL        +F D V+     +L    + + V+TP+R A ++ L   DL+ 
Sbjct: 128 ERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLKP 187

Query: 177 LPVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV        A+          + +    P    +   P G   A  +L  F      Y
Sbjct: 188 YPVETYAKRLAALPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDFMTRIDSY 247

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             ++RD PA +G S LS +L  G +S R      +      L     G+ +WL+ELIWR+
Sbjct: 248 A-DRRDFPAAKGPSYLSIHLRFGTVSIRTL---ARLAHEMSLQPDGQGSATWLSELIWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN  
Sbjct: 304 FYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLADCGVVLGKDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAEARARTLARF 497


>gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
 gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
          Length = 471

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 203/475 (42%), Positives = 276/475 (58%), Gaps = 10/475 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE  RD+ L  +
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIR 183
           L    I     +D  +  PG +LN     +KV+TPF+KA +++ V   +       P + 
Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVL 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +     +      +     + +  Q     LR FC E+V  Y EQRD PA  GTS
Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEEWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG +S RQC  RL            +G   WL+ELIWREFY HL+ F P +  
Sbjct: 240 VLSPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+ F+ W + + W         W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 GQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGE 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           F++HWLPEL  VP++++H P +W     L  +YP P+VDHK+    TL+ Y  AK
Sbjct: 416 FVKHWLPELVEVPSKFVHQPWNWPGHMQL--DYPAPMVDHKQEREITLSLYTQAK 468


>gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
 gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
          Length = 481

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 164/485 (33%), Positives = 240/485 (49%), Gaps = 26/485 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62
           M+     LVW R DLR  D+ ALY A       V   F+   +        + R+  FI+
Sbjct: 1   MTTSSYALVWFRRDLRDFDHAALYHALKAH-THVYCAFVFDTDILDALPDRADRRVEFIW 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+ ++Q++L  +G             + E + +  ++ +   ++ NR YE + V RD  
Sbjct: 60  ESVRELQQALRSQGGDLIVLHAC----AKEAIPALAVKLKANAVYSNRDYEPDAVARDAK 115

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLP 178
           +  +L    I    + D V+     +L  A + Y V+TP++ A ++ L            
Sbjct: 116 VAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDR 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                     T         +    +  M      +    L    +E++  Y + RD PA
Sbjct: 176 YRQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEFQERMARYKDARDFPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       ++          GA +WLNELIWR+FY  ++  +
Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQHNA-------GAETWLNELIWRDFYFQVLHHH 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHNRLRM+TA
Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++F
Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D QG FIR ++PEL     + IHAP              +  +YP P+V+H       L+
Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALS 468

Query: 473 QYYAA 477
            Y  A
Sbjct: 469 LYKNA 473


>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
 gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
          Length = 518

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 170/489 (34%), Positives = 243/489 (49%), Gaps = 29/489 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           S R+  FI AS+
Sbjct: 20  GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKSDRRVEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     Q  V  +F N   E +   RD+ + K
Sbjct: 79  EELRGALRETGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180
            L Q       F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPYFG 194

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A        P+       +    +  +      +    L    +E++  Y  +RD PA
Sbjct: 195 ALAKPPEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPA 254

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R    R     +        GA +WL+EL+WR+FY  ++   
Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHASMLRGS----RGAATWLSELVWRDFYFMILHHR 310

Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRM 370

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQS 430

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +YIHAP +            L   YPLPIVDH  A   
Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARAA 490

Query: 470 TLNQYYAAK 478
           TL++Y   K
Sbjct: 491 TLDRYAVTK 499


>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
 gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
          Length = 505

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 165/494 (33%), Positives = 227/494 (45%), Gaps = 31/494 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK        LVWLR DLR  DN ALY A   +  +V  VF+  PE       + R+  F
Sbjct: 1   MKNGID--NALVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEF 57

Query: 61  IYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           I  S++ V   L          G              ++ +           ++ +   E
Sbjct: 58  IRDSVVGVDAELRALAASHGIDGAGLIVRH----GRPLQEIPRLAAALGAQAVYASHDDE 113

Query: 114 INEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  +   L    I      D V+     +L      + V+TP+R A ++ L   
Sbjct: 114 PEALARDARVRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDF 173

Query: 173 DLRSLPVP----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
            L S PV     A+                +    +  +           L     E+V 
Sbjct: 174 YLSSYPVERHAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFLERVD 233

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +Y + RD PA++G S L P+L  G +S R+      +           GA  WL+EL+WR
Sbjct: 234 HYADWRDFPAVKGPSYLGPHLRFGTVSIRRLAREAHQRLTAGS----RGAEVWLSELVWR 289

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +FY  L+  +P V  G     +      +      L  AW +G TG+PI+DAAM QL   
Sbjct: 290 DFYHQLLHHHPRVVGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRT 349

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRMI+ASFL KDL +DWR GE +F   L D DLASNNGGWQWAASTG D+ PYF
Sbjct: 350 GYMHNRLRMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYF 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPI 460
           RIFNP  Q +RFDP+G FIR +LP+L  +P   +HAP              L  +YP P+
Sbjct: 410 RIFNPVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYPAPV 469

Query: 461 VDHKKACHHTLNQY 474
           V H++A   TL ++
Sbjct: 470 VAHEEARERTLARF 483


>gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans
           DMS010]
 gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans
           DMS010]
          Length = 464

 Score =  312 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 191/472 (40%), Positives = 272/472 (57%), Gaps = 10/472 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              LVWLRNDLR+ DN A+  A    D  +  VFIATP+QW+QH  SA +     AS+  
Sbjct: 3   PTQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++ G+ F   +   F D  + L ++C Q+ +  +++N++  ++E RRD  +   L
Sbjct: 61  INQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +     D+ L+    +L    + +KV+TP+ +  +Q L +      PVP  +    
Sbjct: 121 EGFGVNCHALDADLIVTVPVLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEAI 180

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                 P +        D ++P  E + L  L +FC+ KV  Y + RDIPA  GTS LSP
Sbjct: 181 AVDLLKPGW---SDDYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLSP 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YLSIG + PR+    ++    +  +  +     WL EL WR+FYR L+  +P + M KPF
Sbjct: 238 YLSIGRIGPRRLLASIQYHCSEQGLHWQDND--WLRELAWRDFYRQLLLHFPRLSMEKPF 295

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P T+ + W  D     AW +G TGFPI+DAAMRQL   GWMHNRLRMITASFL K LL+
Sbjct: 296 KPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLLI 355

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE++FM  LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR 
Sbjct: 356 DWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIRR 415

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  +  + IH P    D+      YP+PI+D+K A    ++ +   K 
Sbjct: 416 FVPELKKLSGKQIHNP---SDQLRTETGYPMPIIDYKPARQTAIDAFADLKN 464


>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 476

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 478

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 235/484 (48%), Gaps = 25/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQ-HGISARQSHFIYAS 64
           M+  +VW R DLR++DN AL+ A       V+ V+I   P+Q    H +      +++ S
Sbjct: 1   MTT-IVWFRQDLRVSDNPALHEATRR--GPVLPVYILETPDQSGDEHPLGGASRWWLHHS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +++ L                 +   +     +     +++NR YE + + RD  L+
Sbjct: 58  LAALKEDLPGL--------VFLRGSARHLIPELVQETGADAVYWNRCYEPHAIERDSALK 109

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVP 180
           + L+  +I  KSF  S+L  P  +       YKVY+PF KA  +  V   L     +   
Sbjct: 110 ESLKTDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISVPDPLPAPAEINFT 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A      ++   +        +  + ++  G   A   L +F    +  Y ++R+ P + 
Sbjct: 170 AYDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLP 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSP+L  G +SP+Q W+  +            G     +E+ WREF  HL+  YP 
Sbjct: 230 NVSRLSPHLHFGDISPKQVWSATQHATARKSSLSSDGHKFL-SEIAWREFSYHLLYHYPQ 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +   W +    L+ W+ G TG+P++DA MR+L   G+MHNR+RM+  SF
Sbjct: 289 LPEKNW-RPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK L + W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  QG +FDP
Sbjct: 348 LVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R W+PEL  +PT+++ +P              L   YP PIVDH KA    L+ Y
Sbjct: 408 DGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGY 467

Query: 475 YAAK 478
              K
Sbjct: 468 EDVK 471


>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
 gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
          Length = 476

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474


>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
           CJ2]
 gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
           naphthalenivorans CJ2]
          Length = 477

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 163/487 (33%), Positives = 238/487 (48%), Gaps = 28/487 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL+ A  + + +V   F+           + R+  FI  SL+ + + 
Sbjct: 1   MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59

Query: 72  LSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           L++  +         +    +++ L +   +  V  +F N   E   + RD  ++  L  
Sbjct: 60  LAKLALPAGLLIRHGT----ALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLLEC 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182
             V   +F D V+     +L  A Q Y V+TP++KA ++ +    L+  PV         
Sbjct: 116 AGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASALAA 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           R               +    +  +           L     +++ +Y + RD PA++G 
Sbjct: 176 RPADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFLDRMPHYADTRDFPAVKGP 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S L  +L  G +S R+       +          GA +WL+ELIWR+FY  ++A +P   
Sbjct: 236 SYLGVHLRFGTISIRKITLNALAQQQTGSE----GAATWLSELIWRDFYAQILANFPHAA 291

Query: 303 MGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               F P  + I W +        QAW +G TG+P++DAAM QLN  G+MHNRLRM+TAS
Sbjct: 292 -SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTAS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDL +DWR GE YF  +L D DLASNNGGWQWAASTG D+ PYFRIFNP  Q ++FD
Sbjct: 351 FLVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSEKFD 410

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
             G FIR +LP L  +P   +H+P              L  NY  P+V H +A   TL +
Sbjct: 411 ADGKFIRKYLPVLAKLPKAALHSPWLASPMERAAASVALGSNYARPVVAHAEARALTLQR 470

Query: 474 YYAAKKQ 480
           Y   KK 
Sbjct: 471 YALVKKS 477


>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 482

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 234/480 (48%), Gaps = 19/480 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQVQ 69
           LVW R DLR +D+ AL  A      +V   F+   E        + R+  FI  SL+++ 
Sbjct: 5   LVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESLVELD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L  +G             +   +        V  +F NR YE    +RD  +   L+ 
Sbjct: 64  AALRTRGGALLVRH----GWATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSAALKA 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF D  +L    +L+ A + Y V+TP+R A ++ L   D       +  L    
Sbjct: 120 DGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGSGVLAATP 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLS 246
               +P      F   D              +       ++  Y +QRD PA++G S LS
Sbjct: 180 AADGVPPLAKIGFSGTDLRRLGIVPGMRGGRQLLADFLGRIGRYRQQRDFPAVKGVSYLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--G 304
            +L  G +S R      K        +   GA +WL+EL+WR+FY  ++  +P V     
Sbjct: 240 VHLRFGTVSVRDLV--AKAIAAGAFREGGEGAATWLSELVWRDFYFMILDRFPHVVERAF 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KP           +      AW  G TG+P++DAAMRQLN+ G+MHNRLRM+ ASFL KD
Sbjct: 298 KPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVASFLTKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+GE YF  QL D DL++NNGGWQWAASTG D+ PYFRIFNP  Q +RFDP G F
Sbjct: 358 LGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERFDPAGKF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR +LPEL NVP ++IHAP              +    P P+VDH +A   TL +Y   K
Sbjct: 418 IRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLERYAIVK 477


>gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
          Length = 499

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 193/482 (40%), Positives = 274/482 (56%), Gaps = 14/482 (2%)

Query: 10  HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q  FI   + 
Sbjct: 22  ALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI F+  Q   F D   ++  YC QQ ++++F        E+   +  +  
Sbjct: 82  LLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPEINEQQRDQAC 138

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +Q  +     ++  LL PG++LN +  MYKV+TPF +   +  + A    LP+P     G
Sbjct: 139 IQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +S
Sbjct: 197 PVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSIS 256

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     
Sbjct: 257 PYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNYN 316

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL
Sbjct: 317 FNRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE  F  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR
Sbjct: 377 IDWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIR 436

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LPEL +   + +H P +    +           YP  IV+H  A    L      KK 
Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKA 496

Query: 481 SL 482
           + 
Sbjct: 497 AA 498


>gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 481

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 193/487 (39%), Positives = 281/487 (57%), Gaps = 24/487 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L 
Sbjct: 1   MS-DILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLK 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q +  L++ GI   + + ++F+D    L + C Q   T ++ N + E   V      +  
Sbjct: 58  QFESQLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPE---VDEQLRDKHL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180
           +   +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P      
Sbjct: 115 IASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTPVHSTGS 174

Query: 181 ------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
                                      +     +     +P+ +     ++  F   KV 
Sbjct: 175 AQAGSSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVN 234

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   RDIP+++GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR
Sbjct: 235 DYSRLRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWR 294

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +FY+HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GW
Sbjct: 295 DFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGW 354

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRI
Sbjct: 355 MHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRI 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP  Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A  
Sbjct: 415 FNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEARL 474

Query: 469 HTLNQYY 475
             L  + 
Sbjct: 475 RALAFFK 481


>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
 gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
          Length = 471

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 199/474 (41%), Positives = 275/474 (58%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F++TPEQW++H ++  Q+  I   L+ + +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVAGFVSTPEQWQEHNMAPMQADLIARRLVHLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I   Y +   F +  E +  + L      +  N  YE+NE   D+ +   L   
Sbjct: 62  ELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLAKS 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            +  ++F D  +  P ++LN   + +KV+TPF++A +                +P   + 
Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPEPQAEIPQEAIQ 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     + +   + +H LR+F +E+   Y E+RD+P++ GTSQL
Sbjct: 182 PLEADRYHADVPFTYPRESSDQWYVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--HTDLTDGKATWLSEIIWREFYQHLLVFEPKLVKGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  GTF+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R+W+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 420 RYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
 gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
          Length = 475

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 146/484 (30%), Positives = 238/484 (49%), Gaps = 26/484 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L W R DLR++DN AL +A   SD   IA+FI      ++  + +    +++ SL+++
Sbjct: 1   MNLCWFRQDLRLSDNPALRSAL--SDNSAIALFILEETDTQRP-MGSACKAWLHESLIRL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L   G+     +     D+ + +       ++  +++NR+Y+  +V  D+ L + L+
Sbjct: 58  QSDLEAIGVPLVLRR----GDARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113

Query: 129 HRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185
              +      +     P       A   YKV++PF KA ++  V A   ++P        
Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPTKIQSKPQ 173

Query: 186 ------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   +   ++             ++  GE  A    ++F +  +  Y + RD+P+ 
Sbjct: 174 LDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPSK 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LSP+L  G +SP Q W+ +         +     + +L E+ WRE + H + FY 
Sbjct: 234 NHTSCLSPHLRFGEISPLQIWHGVHAH---SGGEVDKDGYKFLAEVGWRE-FSHSILFYA 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  +    +   W +D + L AW+ G TG+P++DA MR+L   G++HNR+RM+ AS
Sbjct: 290 DNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVAS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL+K L +DWR GE +F   L+D   A+N   WQW A +G D+ P+FRIFNP +Q ++FD
Sbjct: 350 FLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G++IR W+PEL N+  + IH P              L  NYP PIVDHK A    L  
Sbjct: 410 PKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALAA 469

Query: 474 YYAA 477
           Y   
Sbjct: 470 YKDM 473


>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
 gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
          Length = 446

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 229/476 (48%), Gaps = 32/476 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA   ++ +V+ +F+  P        S R+   + ASL 
Sbjct: 1   MTTSLMWFRRDLRLGDHPALQAAA--AEGQVVPLFVLDPRLAG----SGRRWERLLASLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++   +        Q     D  E +     +   +++  + +      RRD  +E+R
Sbjct: 55  ALRE---ETDGALVIRQ----GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I          + PG + N +   Y+V+TPF +A  ++  +A             
Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAP------------ 155

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +            GE+ ALH    FC E +  Y E RD P +  TS+L
Sbjct: 156 AGDPEVEWMTKLESDPLPSHSDQEAGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G + PR     L         +       ++ EL WREFY  ++   P     +
Sbjct: 216 SVALKYGEIHPRTLLADLGTHGTGASGE---DVERFVAELAWREFYADVLWHDPGSA-WR 271

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 + + +  D  LL+AWK G TG+P +DA MRQL   GWMHNR+RM+ ASFLVKDL
Sbjct: 272 DLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 331

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W +G  +FM  LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP  QG RFDPQG ++
Sbjct: 332 HMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQGDYV 391

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W+PEL ++P    H P    +   L+  YP P+VDH +     L++    K+ +
Sbjct: 392 RRWVPELRHLPGAAAHEPWRHSE--GLAHGYPEPVVDHAEERREALDRLAELKEST 445


>gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
 gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
          Length = 589

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/486 (34%), Positives = 248/486 (51%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A       +  +I ++I +PE    H  S  +   I  +L+ 
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C       LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
             + I    +D   +  PG +     + Y VY+P+ ++ +  L Q               
Sbjct: 220 ATQGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +      N  +  +   +    M+P GEQ A   LR+F  +K   Y  
Sbjct: 280 GNARKHFKNLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR+W+PEL +V    IH P+          N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERAL 579

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 580 EKYKKA 585


>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
 gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
          Length = 476

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPTS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS   +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 478

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 204/467 (43%), Positives = 268/467 (57%), Gaps = 10/467 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R DLR+ DN AL+ A  N   + IA +    +QW +H +S RQ   I   L  + +S
Sbjct: 7   VWFRRDLRVHDNPALFHAMKN--GQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLEDLTQS 64

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L+  G+       ++F    +   S   Q  V +LF N +YE+NEV   K + + LQ + 
Sbjct: 65  LAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEALQQQD 124

Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           I C  + D  L+ PG I+N   Q YKV+T F+KA +  L        P+P  +    V  
Sbjct: 125 IKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPKKQQAPKVKT 184

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                            +   EQ AL  L +FCK+++  Y   RDIP++ GTS LSPYL+
Sbjct: 185 DISALQSIAQVDIDP--WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTSTLSPYLA 242

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           IG LS RQCW   ++           G  +W +ELIWR+FYRHL+ F+P VC  K F   
Sbjct: 243 IGSLSVRQCWQMSQQVSPSGSKPE--GIATWQSELIWRDFYRHLIYFFPHVCQYKAFKQE 300

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T+ + W KD  L QAW  G TG+P++DAAMRQLN  GWMHNRLRM+ A FL K L +DWR
Sbjct: 301 TDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLFIDWR 360

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP  Q +RFD +GTF+R ++P
Sbjct: 361 LGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLRQYVP 420

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           EL ++  + IH P     K    L YP PIVDHK+A   T   +   
Sbjct: 421 ELASLDDKRIHNPDPITVK---KLGYPAPIVDHKQAVVQTKQWFKEL 464


>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
           NSW150]
 gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
           longbeachae NSW150]
          Length = 472

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 161/481 (33%), Positives = 248/481 (51%), Gaps = 15/481 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ DN A   AC +    VI ++I      +   +   Q+ ++Y SL 
Sbjct: 1   MTTALVWFRFDLRLNDNPAFIEACSHHQF-VIPLYIYDE---KNSVLGGAQAWWLYHSLT 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL+Q+G+     +     D +E +        ++ +++NR YE   + RDK ++  
Sbjct: 57  SLSNSLAQRGLNLILRK----GDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
           L  R I     +  L   P +I N +   +KV+TP+ K   Q  N+ +          + 
Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   +                   +  GE  A   L++F +  +  Y   RD P    TS
Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDFPIKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      ++   ++      + A  +L+EL WREF  +L+  +P    
Sbjct: 233 RLSPHLHFGEISPWTILRAIELAKLN-PNCDLASAEHFLSELGWREFSVYLLYHFP-KLP 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W+ D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FD  G+
Sbjct: 351 GLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDADGS 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +IRHW+PEL+ + +Q IHAP      ++  L+  YP PI+DH +A    LN Y   K+  
Sbjct: 411 YIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQLKRND 470

Query: 482 L 482
           L
Sbjct: 471 L 471


>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
 gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
          Length = 481

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 165/490 (33%), Positives = 242/490 (49%), Gaps = 26/490 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62
           M+     LVW R DLR  D+ ALY A       V   F+   +        + R+  FI+
Sbjct: 1   MTTSSYALVWFRRDLRDFDHAALYHALKAH-THVYCAFVFDTDILDALPDRADRRVEFIW 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+ ++Q++L  +G             + E + +  ++ + + ++ NR YE + V RD  
Sbjct: 60  ESVRELQQALRSQGGDLIMLHAC----AKEGIPALAVKLKASAVYSNRDYEPDAVARDAE 115

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLP 178
           +  +L    I    + D V+     +L  A + Y V+TP++ A ++ L            
Sbjct: 116 VAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDR 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                     T         +    +  M      +    L    +E++  Y + RD PA
Sbjct: 176 YRQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEFQERMARYKDARDFPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       ++          GA +WLNELIWR+FY  ++  +
Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQHNA-------GAETWLNELIWRDFYFQVLHHH 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHNRLRM+TA
Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++F
Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D QG FIR ++PEL     + IHAP              +  +YP P+V+H       L 
Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALA 468

Query: 473 QYYAAKKQSL 482
            Y  A   +L
Sbjct: 469 LYKNASSTAL 478


>gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
 gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
           baumannii 1656-2]
 gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
          Length = 480

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA         +        +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F +E V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440]
 gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440]
          Length = 480

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 268/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   S  D +   PG++L  +   ++V++ F+K  +++L ++          +    
Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    F     A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWVPELQELDEKAIHQPIKSTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLPRR 473


>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
 gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
          Length = 476

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 248/490 (50%), Gaps = 27/490 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+    M       + D R+ DN AL+ A  + +  V+ V++          I +    +
Sbjct: 1   MQNKIIMM-----FQKDFRLYDNPALFEAAQSGE--VVPVYVQDETF----SIGSAAKWW 49

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +++ VQK L   G  F   +      + E + S   Q  +T +++N  YE + ++ +
Sbjct: 50  LHHAIIDVQKQLKALGATFIIRK----GKTQEEILSLIEQLDITAVYWNICYEPDRLQSN 105

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + ++  L+ + +ICK F+  +LL P  I       YKV+TPF  A  +  +      +  
Sbjct: 106 QKMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQAIPKPTSKVQS 165

Query: 180 PAIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                + P +                 ++ ++   E+ A    +KF   K+ +Y E RD 
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDF 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLM 295
           P     S L+PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+
Sbjct: 226 PNQNVHSMLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH P    +         L   YPLP+VDHK A   
Sbjct: 405 EKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 471

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 202/474 (42%), Positives = 278/474 (58%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A F+ATPEQW++H ++  Q+  I   L  +++
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHLEE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  +   Y +   F D  E +  + L   V  +  N  YE+NE   D+ + + L + 
Sbjct: 62  ELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLANS 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            +  ++F D  +  P ++LN   + +KV+TPF++A +                +    L 
Sbjct: 122 EVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAELSKEVLQ 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     +     + +  LR+F +E+   Y  +RD+PA+ GTSQL
Sbjct: 182 AVEADRYHADVPFSYPRESSERWHASTTDIVQQLREFARERSDAYQAERDLPAVDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E    L     G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--LPDLTEGKATWLSEIIWREFYQHLLVFEPKLVRGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FIPW EKI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL KDL
Sbjct: 300 GFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  GTF+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 420 RHWVPEIKEVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 191/478 (39%), Positives = 274/478 (57%), Gaps = 8/478 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+      + IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GQTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   S+ D +   PG++L  +   ++V++ F+K  +++L ++          +    
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    F     A+   +P GE  A   L +F  + +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGQF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA-AKKQS 481
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +   A++Q+
Sbjct: 419 IRHWVPELQELDEKAIHQPIKPTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLARRQN 475


>gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 464

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 195/471 (41%), Positives = 271/471 (57%), Gaps = 10/471 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   + 
Sbjct: 1   MNT-LFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L+  GI        +F D    L S+C    +  +  N +YE+NEV RDK +  +
Sbjct: 58  YLQEQLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQ 117

Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              R I  +  +   + P GSI N + +MYKV+TPF++A ++            P  +  
Sbjct: 118 CDKRSITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQNP 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +  S                +P+ ++  L ++  F  +K+  Y +QRDIP+I+GTS L
Sbjct: 178 IKIEKSQHLES-----DGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G++SP+Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A YP +  G+
Sbjct: 233 SPYLALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGE 292

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F      +EW K      AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K L
Sbjct: 293 NFNEKYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHL 352

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP G FI
Sbjct: 353 LIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFI 412

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           R +LPEL NVP ++IH PH++L         Y   IVDHK A    L  + 
Sbjct: 413 RKYLPELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAFK 463


>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 476

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNLALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
           37]
          Length = 453

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 269/471 (57%), Gaps = 19/471 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HLVW RNDLR +DN ALY AC      V  ++  TP QW+ H ++  Q+ FI  +L  +
Sbjct: 1   MHLVWFRNDLRTSDNSALYYACL--KGPVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     + ++F      L        +  +  N + EINE  RD+ ++K   
Sbjct: 59  AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKA-- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    +    +L  GS+L     MYKV+T FR A ++ + Q DL  LP PA ++    
Sbjct: 117 -GLPLVLYQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +     +Y  +     +P GE  AL  LR F  + +  Y   RDIP++ GTS LS Y
Sbjct: 176 VSWSKNISVNYDKK-SSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLSAY 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  GV+S ++C   +   F D L    S  FSW+NE++WREFYRHLM F P +C GK F 
Sbjct: 235 LKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFN 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I W+ +    +AW +G TG+ ++DAAMRQLN  GWMHNRLRM+TASFL K LL+D
Sbjct: 295 KLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLLID 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF   L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR +
Sbjct: 355 WRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIRKY 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + ELN    + IH P +              IV+HK+A  + L++Y   KK
Sbjct: 415 VKELNGFDNKKIHFPVNA-------------IVEHKQARLNALDRYSVLKK 452


>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 476

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + +
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYR 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL  +P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056]
 gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059]
          Length = 480

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 191/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA         +        +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F ++ V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
          Length = 471

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 202/474 (42%), Positives = 277/474 (58%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F++TPEQW++H ++  Q+  I   L+ + +
Sbjct: 3   LVWFRRDLRTLDHTALKAALDTGQ-PVVAAFVSTPEQWQEHNMAPMQADLIARRLVHLDE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I   Y +   F D    +  + L      +  N  YE+NE   D+ +   L   
Sbjct: 62  ELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLAKS 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  ++F D  +  P ++LN   + +KV+TPF++A +       +      A  L     
Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAEILQEATQ 181

Query: 190 PSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P    R+         +     + +   + +H LR+F +E+   Y E+RD+P++ GTSQL
Sbjct: 182 PLEADRYHADVPFTYPRESSEQWFVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  GK
Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--HTDLTDGKATWLSEIIWREFYQHLLVFEPKLVKGK 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGAFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R+W+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 420 RYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae]
          Length = 624

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 245/486 (50%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I      D+ ++PPG + +   + Y VY+P+ ++    L+                
Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312

Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     F              D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF+P 
Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 552

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR W+PEL  +    IH P+     +    N YP PIVDH       L
Sbjct: 553 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 612

Query: 472 NQYYAA 477
           ++Y  A
Sbjct: 613 DRYKKA 618


>gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
 gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
          Length = 477

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 256/480 (53%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR  DN+AL  AC++    +I ++I       Q  + A Q  +++ SLL
Sbjct: 1   MSTAIVWFRQDLRCNDNQALAEACNHHQY-IIPLYIY-----SQESLGAAQHWWLHHSLL 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L ++G+     Q      ++  +       ++  +++NR YE   ++RDK ++  
Sbjct: 55  ALQKELKKQGLDLCLKQ----GQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI 182
           L+ + +     +  L   P ++ N     +KV+TP+ K  I+   Q+ +      P P  
Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPPPLT 170

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  ++   +              +  GE  A++ L  F +  +  Y E R+ P+   T
Sbjct: 171 STSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKTAT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L+P+L  G +SP Q WN ++E  +         A  +L EL WREF  +L+  +P + 
Sbjct: 231 SRLAPHLHFGEISPWQVWNAIEEAKLQPK-CDLRSADHFLAELGWREFSYYLLYHFPELP 289

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F    +   W +D   L+ W+ G TGFPI+DA MR+L   G+MHNR+RMI ASFL+
Sbjct: 290 -NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRMIVASFLI 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL++DWR G  +F + LLD DLA+N+  WQW A TG DS PYFRIFNPT+Q ++FDPQG
Sbjct: 349 KDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQSEKFDPQG 408

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +I+ W+PEL+ VP Q+IH P     +     L  +YP P+VDH       L  Y + +K
Sbjct: 409 EYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIALQHYQSLRK 468


>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
 gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
          Length = 493

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 162/487 (33%), Positives = 236/487 (48%), Gaps = 25/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL+ A   S  +V  VFI           + R+  FI+ASLL++ +
Sbjct: 8   LVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELAQ 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G             +   +    ++  V  +F N  YE   + RD  +   LQ  
Sbjct: 67  ALRALGGGLIVQHAW----AETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQAA 122

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181
                +F D V+     +L  A + + V+TP++ A ++ L      +   P         
Sbjct: 123 GRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYADR 182

Query: 182 -IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            + L     P        +    +  +           L     +++  Y + RD PA++
Sbjct: 183 FVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFADRMQRYDQTRDFPALK 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS ++  G +S R    R  +           GA  WL+EL+WR+FY  ++  +P 
Sbjct: 243 GPSYLSVHVRFGTVSIRALARRALDAMRTGTGGN--GAAVWLSELVWRDFYFMILFQHPH 300

Query: 301 VCMGKPFIPWT--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           V        +        +    L QAW  G TG+P++DAAM QLN  G+MHNRLRM+TA
Sbjct: 301 VVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRMVTA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q ++F
Sbjct: 361 SFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQSEKF 420

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D QG FIR +LP+L  +  ++IHAP             ++  NYP P+V H +A   TL 
Sbjct: 421 DQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEARARTLQ 480

Query: 473 QYYAAKK 479
           +Y   KK
Sbjct: 481 RYAVVKK 487


>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
 gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
          Length = 476

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 153/483 (31%), Positives = 217/483 (44%), Gaps = 27/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D+  L  A     A+V+ VF+  P   R    S  ++ F+   L +
Sbjct: 4   STAIVWFRRDLRLHDHPPLVRALAAH-ARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L ++G      +          L +   +     + +        + RD+ +   L
Sbjct: 63  LDADLRERGSGLVVRE----GRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSAL 118

Query: 128 QHRVICKSFDD---SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                  +      + +   G     A   Y V+TPF +A  Q   +   R+  V     
Sbjct: 119 AAAQPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLP 178

Query: 185 TGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            G      PS                   GE+ A     ++    +  Y    D  A  G
Sbjct: 179 AGLRRGALPSLAALGLTDELSPTARAVEPGERAARRAAERWLDGHLGDYARDHDRLAG-G 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL  G LS R+C  R      +       GA +++ +L WR+FY H++  +P  
Sbjct: 238 TSALSPYLHHGCLSARECEQRAVRRGGE-------GAEAFVRQLAWRDFYAHVLLHHPED 290

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +        + W +D  LL AW+ G TGFP++DA MRQL   GWMHNR R++T SFL
Sbjct: 291 VRREH-QERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGSFL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420
            KDL +DWR GE +FM  LLDGD+ASNNG WQW AS G D  P F RI NP +Q +R DP
Sbjct: 350 TKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRRHDP 409

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R W+PEL  VP   +  P    ++        +  +YP PIVDH       L +Y
Sbjct: 410 DGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDHAHERRRALERY 469

Query: 475 YAA 477
            AA
Sbjct: 470 RAA 472


>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           B4264]
 gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
          Length = 476

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTA-YK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y   K+
Sbjct: 415 RRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474


>gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900]
          Length = 480

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 194/484 (40%), Positives = 272/484 (56%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L             +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F +E V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQGTS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIKT 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
 gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
          Length = 476

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVSK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL+++P +YIH P              L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1]
 gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1]
          Length = 475

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 192/476 (40%), Positives = 270/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   S+ D +   PG++L  +   ++V++ F+K  +++L ++          +    
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    F     A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +               G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWVPELQALDEKAIHQPIKSTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLPRR 473


>gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
 gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058]
 gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
          Length = 480

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 192/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L             +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F ++ V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  
Sbjct: 419 QSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 504

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 240/491 (48%), Gaps = 26/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D  AL+ A   S   V  VFI   +  +      R+  F++ASL ++ 
Sbjct: 14  SLIWFRRDLRVFDQAALHHALRQS-RTVFCVFIFDSDILQHLPEQDRRIEFLHASLTELH 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + G             ++E + +   +  V  +F N  YE   + RD  +   LQ 
Sbjct: 73  EELVKLGGALIVRHA----RAVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQ 128

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   S  D V+     +L+ A + + V+TP++ A ++ L                   
Sbjct: 129 HDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLAD 188

Query: 189 TPSNIPRFFDYP--------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +  P     P              +      +    L     E++  Y + RD PAI+
Sbjct: 189 RFAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFMERIDKYKQTRDFPAIK 248

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS +L  G +S R    R  E           GA +WL EL+WR+FY  ++  +P 
Sbjct: 249 GPSYLSVHLRFGTVSIRHLARRACEAARIAADAS--GANTWLAELVWRDFYFMILQHHPR 306

Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V  G  F P  + I+W          QAW  G TG+P++DAAM Q+N  G+MHNRLRM+T
Sbjct: 307 VVHG-AFKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVT 365

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL+KDL +DWR GE YF  +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++
Sbjct: 366 ACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEK 425

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471
           FD  G FIR +LP+L  +  + IHAP             +L +NYPLP+V H  A   TL
Sbjct: 426 FDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQTL 485

Query: 472 NQYYAAKKQSL 482
            +Y   KK ++
Sbjct: 486 ARYAVVKKVAV 496


>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
 gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
          Length = 486

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 159/494 (32%), Positives = 245/494 (49%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQS 58
           M    A    +VW R DLR+ DN ALY A    +  VI VFI            I A   
Sbjct: 1   MSNRVAFMTSIVWFRQDLRVADNAALYHAAQ--EGPVIPVFIWDDAAPLTNSQAIGAAGK 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +++ SL  +++ L          +     D    L    L+ +   + +NR Y+   + 
Sbjct: 59  WWLHHSLTALREQL----GDLVVLR----GDPATVLQELALETKAEAVRWNRAYDEYGIE 110

Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RDK ++  L+   +  KSF  +VL  P  I   +   YKVY+ + +A+    V A L   
Sbjct: 111 RDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAAPLPVP 170

Query: 178 PVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               +    ++  +   ++        +  + ++  GEQ A   L  F  + +  Y E R
Sbjct: 171 DKIELAVGWVSLGIEALDLLPRDPNWAEGWENVWTPGEQGARERLCVFLDQGLNGYGELR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P +   S+LSP+L  G +SP Q W   +    D+  +  + A  +L+E++WREF  HL
Sbjct: 231 NRPDLPNVSRLSPHLRFGEISPTQIWATTQMH-ADVHPEHATDADKFLSEIVWREFSYHL 289

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +          +   W +++  L+AW++G TG+PI+DA MR+L   G+MHNR+R
Sbjct: 290 LFHFPDLPEKNW-KVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRVR 348

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVK L + W+ GE +F   LLD D+A+N+  WQW + TG D+ PYFRIFNP  Q
Sbjct: 349 MIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYTQ 408

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDP G +IR W+PEL ++    + AP              L   YPLP+VDH+ A  
Sbjct: 409 AQKFDPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTARK 468

Query: 469 HTLNQYYAAKKQSL 482
             L+ Y A K ++ 
Sbjct: 469 KALDGYEAVKAENA 482


>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 500

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 165/487 (33%), Positives = 235/487 (48%), Gaps = 26/487 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S  L+W R DLR  DN AL+ A  + + +V  VF+            + R+  FI+ S +
Sbjct: 21  SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNKADRRVEFIWESCM 79

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L   G          +D +   +     +  V  +F N+ YE   + RD  + K 
Sbjct: 80  ALKTKLQGFGGDLHL----MYDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRDITVGKT 135

Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----A 181
           LQ + I         +     +L  A + + V+TPF+ A ++ L    L   P      +
Sbjct: 136 LQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPSEARVGS 195

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +     +T  ++          +D + P  E           +   Y     RD PAI+G
Sbjct: 196 LAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFLNRMDKYKV--ARDFPAIKG 253

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +   G +S R+     K  +         GA  WLNELIWR+FY  ++   P  
Sbjct: 254 VSYLSVHNRFGTISIRRL---AKAAYDRFKFDGSEGAMGWLNELIWRDFYFQIIYHRPDA 310

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              K F P  ++I+W+ D    +   AW +G TG+P++DAA RQLN  G+ HNRLRM+TA
Sbjct: 311 AE-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNRLRMVTA 369

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL +DWR GE+YF   L D DL++NNGGWQWAAS+G D+ PYFRIFNP  Q ++F
Sbjct: 370 SFLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPYSQSEKF 429

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D  G FIR + PEL  +  +YIH P              L   YP P+V+H  A   TL 
Sbjct: 430 DADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVARKKTLE 489

Query: 473 QYYAAKK 479
           +Y   KK
Sbjct: 490 RYSVVKK 496


>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
 gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
          Length = 479

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 227/482 (47%), Gaps = 25/482 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR+ D+ AL+ A   S   +I ++I        H + A    ++  +L  ++
Sbjct: 9   AIVWFRDDLRMADHPALHEAA-ASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLR 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L ++G             + + L     Q     + ++ +    E  +D  + + L+ 
Sbjct: 68  RNLEKQGGTLLTLS----GSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEE 123

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-------SLPVPA 181
           +     +   +VL+ P ++       YKV   F KAL  + V   L             +
Sbjct: 124 QECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEAPSRLSFHAIPAS 183

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +     +   ++              +  GE      L  F K  V  Y   RD  A +G
Sbjct: 184 VLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAEEG 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL+ G +SPRQ W  L++           G   +L+EL WREF R+ +   P +
Sbjct: 244 TSRLSPYLASGAVSPRQVWAALQKHGA-----HTDGPRIFLSELGWREFARYTLYHLPKL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P    + W + +  L+AW++G TG PI+DA MRQL   GWMHNR RMI  SFL
Sbjct: 299 PFEN-LSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGSFL 357

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DW+ G+ +F   L+D D A+N   WQW A TG ++ P+FRIFNPT Q ++FDP 
Sbjct: 358 TKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFDPN 417

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
           G +IR W+PEL  +  + +  P +  D+        L  +YP PIVD K+     L  + 
Sbjct: 418 GDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRALQAFR 477

Query: 476 AA 477
           + 
Sbjct: 478 SL 479


>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 476

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 248/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ ++I          I +    +++ +++ ++K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPIYIQDETF----SIGSAAKWWLHHAIIDIKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPTSKVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A  + +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +  +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
 gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
          Length = 469

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 201/473 (42%), Positives = 275/473 (58%), Gaps = 10/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+   I   Y +  ++  S   + ++  Q  V+++ +NR+YE+NE  RD+ L  +L 
Sbjct: 60  AEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLA 119

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185
              +     +D  +  PG +LN     +KV+TPF+KA +++ V   +       P +   
Sbjct: 120 SSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVLPE 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                    +      +     + +  Q     LR FC E+V  Y EQRD PA  GTS L
Sbjct: 180 ALQPSLWHEQAPFSYPRESSEAWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTSVL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG +S RQC  RL            +G   WL+ELIWREFY HL+ F P +  G+
Sbjct: 240 SPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVKGQ 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 296 GFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F+
Sbjct: 356 HVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFV 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +HWLPEL  VP++++H P +W     L  +YP P+VDHK+    TL+ Y  AK
Sbjct: 416 KHWLPELAQVPSKFVHQPWNWPGHMQL--DYPAPMVDHKQEREITLSLYTQAK 466


>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
 gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
          Length = 476

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+V+HK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKSMKE 474


>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
 gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
          Length = 487

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 145/482 (30%), Positives = 211/482 (43%), Gaps = 21/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQV 68
           +VW RNDLR++D+ A  AA   + A +I +FI      Q  +  + A    ++  SL  +
Sbjct: 12  IVWFRNDLRLSDHAA-LAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLANSLRTL 70

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L ++G      +     D+   L     + +   +F+       E    + +   L 
Sbjct: 71  DRELRKRGQRLILRR----GDTATILVQIAQEAKAKAVFWLDSEIPAEAACARQVITALH 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT--- 185
              +      S LL   S++ +               ++ L         +  +  +   
Sbjct: 127 EIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALGDPPPPLPAMKKLPPSVAS 186

Query: 186 ---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                +    +          +   +  GE  A   L  F  + +  Y   RD  A   T
Sbjct: 187 VESESIEDWQLEPLHPDWAGGLRARWKPGEAGARKKLDAFLDDAIDGYASGRDDLARDQT 246

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +L  G +SPRQ ++                   +L+EL WREF RHL+   P   
Sbjct: 247 SHLSAHLRFGEISPRQVFH-ATRFAAAHNPALSHDVEKFLSELGWREFCRHLLFDQPD-L 304

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P  +   W  D   L AW+QG TG+PI+DA MR+L   G MHNR+RM+ ASFLV
Sbjct: 305 HRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAASFLV 364

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE +F   L+D D  SN G WQW A  G D+ PYFRIFNP +QG++FDP G
Sbjct: 365 KHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKFDPDG 424

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++  W+PEL  +P + IH P              L   YP PIVDHK A    L  Y  
Sbjct: 425 AYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAARERALAAYRK 484

Query: 477 AK 478
            +
Sbjct: 485 MR 486


>gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
 gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
          Length = 473

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 190/470 (40%), Positives = 258/470 (54%), Gaps = 9/470 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R+DLR  DN+AL AA       VIAVF+ +  QW++H   A +  F    +  +++ 
Sbjct: 7   VWFRSDLRTLDNRALSAAAER--GPVIAVFLTSIPQWQRHDHGANKIDFWLRGVAALREH 64

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           LS   I     +   +D++ + L     Q   T L +NR+Y +NE RRD  +E+      
Sbjct: 65  LSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFHDAG 124

Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           I  +     +   PG +L    + Y V+TPF KA  + L    L     PA +    +  
Sbjct: 125 IAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLAIEA 184

Query: 191 SNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              P                +P G++ A   L +F + +  +Y  QRD PA+ GTS+LSP
Sbjct: 185 DPAPSRELPDACDTPLDASRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGTSELSP 244

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G+LS RQC   +  +    L    +G  +W NELIWREFY H+ A +P +   +PF
Sbjct: 245 YLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDISRHRPF 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P T  + W  D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL K LL+
Sbjct: 305 QPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLSKHLLI 364

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE +FM  L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G FI H
Sbjct: 365 DWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEGRFIAH 424

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           WLPEL  +  +    P    +       Y LPIVDHK A    L+ + + 
Sbjct: 425 WLPELAPLAVKSRFFP---SEAQRRDTGYTLPIVDHKAARQRALDAFKSL 471


>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
 gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
          Length = 476

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                            ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y   K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474


>gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
 gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
          Length = 607

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 161/487 (33%), Positives = 242/487 (49%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN AL  A   +    I +   +I +P+ +  H  +  +  FI  +L  
Sbjct: 114 VHWFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDI 173

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L++  I                +     +   +  + N +YE++E+RR+  + +  
Sbjct: 174 LKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRAC 233

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + IC        +  PG + +   + Y VYTP+ K+ +  + +         A     
Sbjct: 234 VEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNP 293

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + F+                 +    M+P GE  A   L KF  EK+  Y +
Sbjct: 294 SSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQD 353

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
            R+ P++  TS LS + + G LS R      ++      L     G  +W++E+ WR+FY
Sbjct: 354 HRNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 413

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    IEW  +    QAW +G TG+PI+DAAMRQLN  G+MHN
Sbjct: 414 KHVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHN 473

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI  SFL K LL+DWR+GE YFM  L+DGD ASNNGGW + ASTG D  PYFRIFNP
Sbjct: 474 RSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 533

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469
            +Q ++FD +G +IR W+ EL  V  + IH P+   +   ++    YP  IV+HK +   
Sbjct: 534 LLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDKEAAKIAKKSGYPERIVEHKVSRER 593

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 594 CLKRYKE 600


>gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
 gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
          Length = 499

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/494 (35%), Positives = 250/494 (50%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVWLR DLR TDN ALY A  + + +V  VF+            W           R+
Sbjct: 13  TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A+L ++ ++L   G          + +  + + +   +     +F N  YE   +
Sbjct: 72  IEFILAALGELDEALRTDGGGLIVL----YGNPADLVPTLADELGADAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + ++L        +F D V+     +L    + + V+TP+R A ++ L   DL+ 
Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV          PS + R           P    +   P G   A  +L  F      Y
Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMTRIDSY 247

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             ++RD PA +G S LS +L  G +S R       E     L     G+ +WL+ELIWR+
Sbjct: 248 A-DRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEL---SLQPDGQGSATWLSELIWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN  
Sbjct: 304 FYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLAECGVVLGKDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAEARARTLARF 497


>gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
           33331]
          Length = 459

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 208/474 (43%), Gaps = 18/474 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA  +SD +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     +  E +     +     +           RR++ L + 
Sbjct: 60  DLDSGLRDRGGRLVVRE----GEVAEEVRRIVSETEAGVVHMAAGISGYAQRREERLREA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L       S  D+V+              + +        +      LRS      ++  
Sbjct: 116 LSSVGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPYFRRWSGEGLRSPFGAPRKVRV 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245
           P  P +         + + P    G +     L    +       E R D  A   TS+L
Sbjct: 176 PEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDDMAGDATSRL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LSP +  +R +            GA +++ ++ WR+F+  ++A  P+V    
Sbjct: 236 SPHLHFGTLSPTELVHRARA-------TGGPGAEAFVRQVCWRDFHHQVLATRPAVSRSD 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                              AWK+G TG+P++DAAMRQL   GWMHNR R++TASFL K L
Sbjct: 289 YRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRLLTASFLAKTL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            VDWR G  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP  Q KR+DP+G ++
Sbjct: 349 YVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRP-NRVLNPVTQAKRYDPEGAYV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL  +P   +H P     ++    +YP P+V         L ++  A++
Sbjct: 408 RRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVVGLSDG----LARFKEARR 457


>gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
 gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
          Length = 477

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 236/495 (47%), Gaps = 34/495 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK        + W R DLR+ DN AL+ A    +  V+ V+I          + +    +
Sbjct: 1   MKRK----TVICWFRQDLRLEDNPALFVAAE--EGYVLPVYILDDSSPGTWQMGSATRCW 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL+ + +S   K  +F+        + +E L +   Q +  K+ +NR YE   ++RD
Sbjct: 55  LHHSLVSLNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRD 107

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI------QNLVQAD 173
           + ++  LQ   I  S  +  L   P  +L      Y+V+TPF +         +  + A 
Sbjct: 108 QGIKATLQAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAP 167

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            R L    I  +  V   N+     +  Q I   + +GE +A   L +F  + +  Y E 
Sbjct: 168 QRMLMADTIDNSISVQDLNLLPSIPWDSQLIS-HWSVGENSARQSLLRFLDQGLNGYKEG 226

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P     S+LSP L  G LSP   W   K                +L+EL WREF   
Sbjct: 227 RDFPGQNHVSRLSPALHFGELSPNTVWYEAKRCGSG------QDLDHFLSELGWREFAYT 280

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+     +          +   W  +   L  W+QG TG+P++DA MR+L   G+MHNR+
Sbjct: 281 LLYHNHDMPEKN-LQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRV 339

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMIT SFLVK+LL+ W  G+++F   LLD DLA+N+ GWQW A  G D+ PYFR+FNP  
Sbjct: 340 RMITGSFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVR 399

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           QG++FDP GT+   ++PEL  +P +Y+  P              L   YP PIVD   + 
Sbjct: 400 QGEKFDPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISR 459

Query: 468 HHTLNQYYAAKKQSL 482
           +  L+ Y + +K+ +
Sbjct: 460 NRALSAYASIRKKKI 474


>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
 gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
          Length = 459

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 230/473 (48%), Gaps = 20/473 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+TDN+ L      +    + VF+           +  +  F+  +L  +
Sbjct: 1   MDLCWHRRDLRVTDNRML------AGRNALPVFVLDEAVLE--HAAPPRVAFMLDALESL 52

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++G      +     D    + +   +  V  + +N  Y      RD+ +   L 
Sbjct: 53  REAYRERGGNLLIER----GDPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108

Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I        V+  PGSI       Y V+T F K  +       + +       ++ P
Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLDRDKPDPVSAPES----VSDP 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             P  IP   D  F+A +   P  G   A + L  FC   +  Y E RD P+  GTS+LS
Sbjct: 165 DDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTSRLS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R+ +   +    +   K + G    + ++L WREFY  ++ ++P+V    
Sbjct: 225 VDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVVTKN 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +  +IEW  D     AW +G TG+PI+DA MRQL    WMHNR+RM+ A+FL KDL
Sbjct: 285 -YKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLTKDL 343

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G ++F   L+D D  ++ GGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 344 LVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 403

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL  V  + IHA H   D+    + YP PIVDH       +  +  A+
Sbjct: 404 REYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDHAIRREVAIETFERAR 456


>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
 gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
          Length = 469

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 189/467 (40%), Positives = 264/467 (56%), Gaps = 6/467 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLRI+D +A   A       V+AVF     QW++H ++A +  F+  +L  +
Sbjct: 1   MNLVWLRNDLRISDQRA-LGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127
           +  L   GI      C +F    E L          +LF+N +Y      R   +     
Sbjct: 60  RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++ +  +   D V++P G + +   + Y+V+TPF+KA ++ +V+      P P +     
Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P +           +  ++P GE  A   L+ F    +  Y   RD PAI+GTS LSP
Sbjct: 180 PFPGDGAALPTDIPHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIEGTSALSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS RQC +   E           GA  WL+ELIWREF++H++  +P V   + F
Sbjct: 240 YLACGVLSIRQCVSAALELANGGSE----GARVWLSELIWREFFQHILRAFPRVSTNRAF 295

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              TE + W  D     AW +G TG+PI+DAAM QL++ GWMHNRLRMI A FL KDLL+
Sbjct: 296 QEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMFLTKDLLI 355

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFM  L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP G FIRH
Sbjct: 356 DWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDPHGQFIRH 415

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +LP+L  +  +YIH PH        +++YP P+VDHK A    ++ +
Sbjct: 416 FLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462


>gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
 gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
          Length = 475

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 177/479 (36%), Positives = 264/479 (55%), Gaps = 14/479 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W R DLRI D+ AL+ A  +    ++A+ I +P+QW  H  +A +       L  +
Sbjct: 1   MNIIWFRQDLRIHDHAALWHASQH--GPMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL+Q  I         + D    L S C   +V K+F N +  +NE++RD  +++ L 
Sbjct: 59  KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  +        P  SI N + + Y+V+  F+K   + L     +  P+P+ +    
Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178

Query: 188 VTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +                        I   +P  E  AL +L  F   KV  Y ++RD P 
Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TSQLS YL++G++S RQC N L        +   +G  +WL+EL+WREFY+H++  +
Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T++I W      L AW+QG TG PI+DA MRQL   GWMHNR+RMI A
Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q ++F
Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D  G +IR WLPEL ++  + IH P++   + ++ L+YP PIVD K +    +  +   
Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSSRVRAIEAFKGL 475


>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
          Length = 487

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 236/494 (47%), Gaps = 28/494 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            + ++W R+DLR+ DN ALY A   +     V+ +FI          +      +++ SL
Sbjct: 4   PLVIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSL 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  S    G   Q  Q     D +  ++S   Q   T + +NR YE  ++ RD  ++ 
Sbjct: 64  ASLSAS---TGQHLQLFQ----GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKA 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----------LIQNLVQADLR 175
            L+  V   S +  +L  P  +L      YKV+TP+ +                      
Sbjct: 117 TLKDCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPWA 176

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +                        +  I   +  GEQ A   L  + +E    Y E R+
Sbjct: 177 TRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRN 236

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +PA++GTS LSP+L  G +S    W  +K+ F D        A ++L+EL WREF  +L+
Sbjct: 237 LPAVKGTSLLSPHLHFGEISVNTVWYAIKDAFKD--DPENEHADTYLSELGWREFSHYLL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     + F        W      L+AW+ G TG PI+DA MR+L   G+MHNR+RM
Sbjct: 295 FHFPH-IQTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I  SFLVK+LL+DWR GE +F   LLD D+A+N+  WQW A +G D+ PYFRIFNP +QG
Sbjct: 354 IVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPILQG 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469
           ++FD QG +++H+ PEL  +P ++IH P              L  NYP PIVD K +   
Sbjct: 414 EKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSRQR 473

Query: 470 TLNQYYAAKKQSLL 483
            L+ +   K+ + +
Sbjct: 474 ALDAFAVTKEANSI 487


>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
 gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
          Length = 525

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 170/491 (34%), Positives = 242/491 (49%), Gaps = 28/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR TD+ AL+ A  +   +V  VF+   +             R+  FI ASL
Sbjct: 36  GLVWFRRDLRSTDHAALHYALKHC-REVWCVFVFDRDILDPLLARGLKGDRRVDFIRASL 94

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++  +L   G           D +   + +   +  V  +F N  YE + V RD  +  
Sbjct: 95  IELDATLRAAGGGLIVMN----DSAASAIPALARELGVQAVFANHDYEPDAVARDAAVRD 150

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L     +  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+     
Sbjct: 151 SLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEPYLH 210

Query: 185 TGPVTPSNIPRFF-------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                PS               P    +   P G       L +    ++  Y  +RD P
Sbjct: 211 ALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQA-LFEEFTSRMGDYGRRRDYP 269

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R          +        GA +WL+EL+WR+FY  ++  
Sbjct: 270 ALRGPSYLSVHLRFGTVSIRTLARAAHGAVLRGGADSA-GAATWLSELVWRDFYFMILHH 328

Query: 298 YPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V  G+ F P  + I W          ++W+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 329 HPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLR 388

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL VDWR GE YF  QL D D A+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 389 MVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQ 448

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L  NYP P+V H  A  
Sbjct: 449 SEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARK 508

Query: 469 HTLNQYYAAKK 479
            TL +Y   K+
Sbjct: 509 ETLERYAVVKE 519


>gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
          Length = 497

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 161/488 (32%), Positives = 236/488 (48%), Gaps = 27/488 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYA 63
            + LVWLR DLR+ DN AL+AA    D KV   F+   +      Q G+ + R+  FI A
Sbjct: 18  PLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRVEFILA 76

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++ ++  +L + G        S    + E + +   +     +F  R  E   + RD  +
Sbjct: 77  AVAEIDAALREHGAALIVRHAS----AREAIPALAAELGAQTVFCGRDDEPEALARDAAV 132

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179
           E+ L+      ++  + ++     +L    + Y V+TP+R A +        + +     
Sbjct: 133 ERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQPVDSAVT 192

Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               A        P        +    +  +      +    L      ++  Y + RD 
Sbjct: 193 SARLAALPAALRQPLPTLSELGFAPSNLHALKLPLGASGAAALVDDFSRRIDDYDQARDY 252

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +G S LS +L  G +S R+                  GA  WL+EL+WR+FY  ++ 
Sbjct: 253 PARKGPSYLSVHLRFGTVSVRELVAMAWARQQAGSE----GARVWLSELVWRDFYFQILF 308

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V +   F P  ++I+W  D     AW +G TG+P++DAAMRQ+N  G+MHNRLRM+
Sbjct: 309 HHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMV 367

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YF   L D DLA+NNGGWQWAAS+G D+ PYFRIFNP  Q +
Sbjct: 368 VASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSE 427

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470
           +FD  G FIR ++PEL    ++ IHAP              L   YP+PIV H  A   T
Sbjct: 428 KFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRHDLARAET 487

Query: 471 LNQYYAAK 478
           L +Y   K
Sbjct: 488 LERYAVVK 495


>gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
 gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
          Length = 465

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 212/465 (45%), Positives = 289/465 (62%), Gaps = 12/465 (2%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R  DN AL AA  + +  VIA F+ATP+ WR+H ++  Q+  I   L++++  LS+  I 
Sbjct: 2   RTIDNTALNAAIESGE-PVIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNIP 60

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFD 137
             Y +  ++  S++ + S+  Q  VT +  N++YE+NEV RD   E +L    +    +D
Sbjct: 61  LIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRYD 120

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----RLTGPVTPSNI 193
           D     PGS++N     +KV+TP+++A +Q L Q  ++   V       R   P      
Sbjct: 121 DKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQH 180

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
              F YP +  D ++P+     L +LR F  E+   Y   RD P+I+GTS+LS YL+IG 
Sbjct: 181 DMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIGA 239

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           LS RQC  RL     + ++    G  +WL+ELIWREFY+HL+ F P +  G+ F+PW   
Sbjct: 240 LSVRQCMARLL---YEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGRH 296

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           + W  D   +QAWK+G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL+KDL VDWRIGE
Sbjct: 297 LTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIGE 356

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           +YFMS+L+DG+ ++NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G F+RHW+PEL 
Sbjct: 357 DYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPELK 416

Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           NVP +YIH P  W +     ++YP PIVDHK     TL  Y  AK
Sbjct: 417 NVPDKYIHQPSKWANAK--GVSYPSPIVDHKAQREITLANYKNAK 459


>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 189/482 (39%), Positives = 261/482 (54%), Gaps = 14/482 (2%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+M+  L+W R DLR+ DN AL AAC    ++   V AV+  TP QW QH ++  Q  FI
Sbjct: 2   TSMN-SLMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  + ++L+  GI        +FD+    L +Y  Q  +  ++   + E   +   +
Sbjct: 61  QRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPE---INERR 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                +   V     D   +L  G + N A  MYKV++PF K       Q  +  + VPA
Sbjct: 118 RDRALIDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPA 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                  TP+ +       ++     +P GE  A  IL +F   +V  Y  +RD PA++G
Sbjct: 178 PIAAVLATPNEV---VFNCYKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L+IGV+S RQC   +   +   L++    A +WLNELIWREFYRHL+  +P +
Sbjct: 235 TSRLSPFLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRL 294

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M   F    + I W  +     AW  G TG+PIIDAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 295 SMNHNFNELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFL 354

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LLVDWR GE YF  +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP  Q  +FDP 
Sbjct: 355 TKHLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPD 414

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +FI+ ++ EL+      IH P +     L        YP PIV+HK A    +    A 
Sbjct: 415 ASFIKRYVSELSAWSLADIHQPKTINVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSAL 474

Query: 478 KK 479
           K+
Sbjct: 475 KR 476


>gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 511

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/482 (23%), Positives = 189/482 (39%), Gaps = 27/482 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLR  D+  L AA   S++ VI ++I  PE W+Q   S R  HFI+  L+ + 
Sbjct: 6   SIVWFKRDLRNHDHAPLLAASQ-SNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCLVDLN 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L+  G            D  + L     Q  V  ++ + +   +      L   +L  
Sbjct: 65  IALTDLGQPLIVR----VGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVGKLCL 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                    S   P   ++                + +N+       +P    +      
Sbjct: 121 DR----NISSHEFPTNGVVRRLRSRDDWSKIRNVRMAENITAKPNNLVPTLGCQSDSLPE 176

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSP 247
             +      +    I  +   G   A+  L+ F   +   Y+     P++     S+LS 
Sbjct: 177 KDD----PMFGNTPIGKVQKGGRTQAVADLQSFLNHRCQKYLHHISAPSLSDVHCSRLST 232

Query: 248 YLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L+ G LS R+  + + +    L             ++ + L WR  +   +   P +  
Sbjct: 233 HLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFGSRLAWRCHFVQKIEDQPEIET 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +    E+  +    QAW  G TG+P +DA MR L   GW+  R+R +  SF   
Sbjct: 293 HCMHPAFEGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITFRMRAMLVSFASY 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q    DP G 
Sbjct: 353 QLWLDWRVSGDHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSLEHDPTGA 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR W+PEL NVP ++IH P +W          +L  +YP PIV+H  A +    +  A 
Sbjct: 411 FIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSFAANAAKQKIAAV 470

Query: 478 KK 479
           +K
Sbjct: 471 RK 472


>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
 gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
          Length = 500

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 245/499 (49%), Gaps = 23/499 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALMRAV-ASGRPLVCVYVDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLATLDAALARHGGRLLLLR----GDARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174
             L+  L+      +S + S+L  P  ++  A   ++V+T + +A+ ++      + A  
Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVAAPLPAPE 175

Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           R    P       R     T +  P   D+     D      E  A   L  F    +  
Sbjct: 176 RIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + I W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH
Sbjct: 415 NPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDH 474

Query: 464 KKACHHTLNQYYAAKKQSL 482
             A    L+      K S 
Sbjct: 475 DGARRRALDALATLPKPSA 493


>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 497

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 162/488 (33%), Positives = 235/488 (48%), Gaps = 27/488 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYA 63
            + LVWLR DLR+ DN AL+AA    D KV   F+   +      Q G+ + R+  FI A
Sbjct: 18  PLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRVEFILA 76

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++ ++  +L ++G        S    + E +     +     +F  R  E   + RD  +
Sbjct: 77  AVAEIDAALRERGAALIVRHAS----AREAIPVLAAELGAQAVFCGRDDEPAALARDAAV 132

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179
           E+ L+       S  + ++     +L    + Y V+TP+R A +        + +     
Sbjct: 133 ERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQPVDSAVT 192

Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               A        P        +    +  +      +    L      ++  Y + RD 
Sbjct: 193 SARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDFSRRIDDYDQARDY 252

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +G S LS +L  G +S R+                  GA  WL+EL+WR+FY  ++ 
Sbjct: 253 PARKGPSYLSVHLRFGTVSVRELVAMAWARQQAGSE----GARVWLSELVWRDFYFQILF 308

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V +   F P  ++I+W  D     AW +G TG+P++DAAMRQ+N  G+MHNRLRM+
Sbjct: 309 HHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMV 367

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YF   L D DLA+NNGGWQWAAS+G D+ PYFRIFNP  Q +
Sbjct: 368 VASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSE 427

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470
           +FD  G FIR ++PEL  + ++ IHAP              L   YP PIV H  A   T
Sbjct: 428 KFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRHDLARAET 487

Query: 471 LNQYYAAK 478
           L +Y   K
Sbjct: 488 LERYAVVK 495


>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
 gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
          Length = 459

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 185/472 (39%), Positives = 245/472 (51%), Gaps = 23/472 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN AL AA   S   V+ V+I  P        S  +S F+ A L  +  
Sbjct: 3   IHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALDA 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+           + +  L     +   + + +NR Y     RRD+ +E  L   
Sbjct: 63  QLQHHGLRLIVRH----GEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAA 118

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +   D  + PP  IL      Y VYTP+ +     L  ADLR +  P ++    + 
Sbjct: 119 GCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCRDLP 178

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S+       P     P+ P GE  A  IL +F +  +  Y  QRD+PA+ GTS+LSPYL
Sbjct: 179 VSHAIPDLLAPH----PLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTSRLSPYL 234

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G+++ RQC    +            GA +W+ EL WR+FY  ++  +P V  G  F P
Sbjct: 235 RFGMIAVRQCLAVAQAHPG-------PGADTWIAELAWRDFYIQVLFHHPHVLRG-AFKP 286

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + + W  D  L  AW  G+TG+P++DAAMRQL   GWMHNR RMI ASFL KDLL+DW
Sbjct: 287 QYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTKDLLIDW 346

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YFM  LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G +IR +L
Sbjct: 347 RWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGDYIRRYL 406

Query: 430 PELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           PEL  VP   IH PH             +  +YP P+VDH +     L  Y 
Sbjct: 407 PELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIYR 458


>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
 gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
          Length = 483

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 232/481 (48%), Gaps = 21/481 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR+ DN+A   A   +   VI ++I  PE+     +   Q+ +++ SL+ 
Sbjct: 7   SPTILWFRKDLRLDDNRA-LLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +        + L     +     + +NR+Y+ + +  D  L+  L
Sbjct: 66  LDQSLQSYGSRLVLRRGP----PGQVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAAL 121

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPA 181
           +       S    +L  P  +   +   ++VYTPF +AL +       V+          
Sbjct: 122 RSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDPPPPVERPKTLHNPAH 181

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +  +    +        +    ++  GE  A   L +F    +  Y  QRD PA+  
Sbjct: 182 WPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPALPH 241

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L++G +SP + W+       D+          +  EL+WREF  HL+  +  +
Sbjct: 242 TSGLSPHLALGEISPARIWHATIGLGDDVSTD---DYVHFRKELVWREFSYHLLFHFADL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   + +   W K++  L AW++G TG+PI+DA MRQL   G MHNR+RMI ASFL
Sbjct: 299 ASQNWNDRFNDF-PWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASFL 357

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +KDL++DWR GE +F   L+D D ASN   WQW A +G D+ P+FRIFNP  Q ++FDP 
Sbjct: 358 IKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKFDPD 417

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475
           G +IR ++PEL  +P   IH P              L   YP P+VDHK+A    L  Y 
Sbjct: 418 GDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALEAYK 477

Query: 476 A 476
           +
Sbjct: 478 S 478


>gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 513

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 226/479 (47%), Gaps = 18/479 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW RNDLR++DN AL  A   S   V+ +F+  P+  R+H + A    ++   L  +  
Sbjct: 33  IVWFRNDLRLSDNPALSHAV-ASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHA 91

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G V          D++  +     Q    ++ +NR+Y+      D  ++  L+H 
Sbjct: 92  DLARMGAVLHV----ACGDALALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHA 147

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            VI  SF   VL  P ++   A   ++V+T + +A   +         P        P  
Sbjct: 148 GVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRAARASGEPLPPLPAPGHVHAAVSPGA 207

Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                  +   +  GE  A   L  F    +  Y + RD P + 
Sbjct: 208 WEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGYADARDRPDLP 267

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFY 298
            TS+LSP L  G +SPRQ W+                     +L+EL WR+F   L+   
Sbjct: 268 ATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWRDFAVSLLYAQ 327

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +     F    + + W  D+  L AW+QG TG+PI+DA MRQL   GWMHNR+RMI A
Sbjct: 328 PELVSCN-FRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHNRVRMIVA 386

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL DWR+GE +F   L+D D+ASN   WQW A  G D+ PYFR+FNP +Q +RF
Sbjct: 387 SFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNPVLQARRF 446

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP GT++R W+PEL  VPT  +HAP +        + YP PIVD +      L  +   
Sbjct: 447 DPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVDLQGGRARALAAWKGL 505


>gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus
           Af293]
 gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus Af293]
 gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus A1163]
          Length = 586

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 166/486 (34%), Positives = 254/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A       +  +I ++I +P+    H +S  +   I  +L Q
Sbjct: 96  VFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARVDLILRTLHQ 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ LS+  I           +  + +   C Q     L+ N +YE++E+RR+  L +  
Sbjct: 156 LKRDLSELDIPLYMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVRLC 215

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
               I  ++  D+ ++PPG + +   + Y VY+P+ +  +  L +               
Sbjct: 216 AKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCLEVSEEPGSNP 275

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +         +  +   Q +  ++P GE  AL  L  F +EK   Y E
Sbjct: 276 GDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAFLEEKGRDYAE 335

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +R++ + Q TS LSPY + G+LS R      +      L     G   W+ E+ WREFYR
Sbjct: 336 ERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWIGEVAWREFYR 395

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  +     AW++G TGFPI+DAAMRQ     WMHNR
Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQAKQDKWMHNR 455

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 456 TRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
           +Q +RFDP G +IR W+PEL ++    IH P++       + N YP P+++H ++    L
Sbjct: 516 LQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPMLNHSQSRDLAL 575

Query: 472 NQYYAA 477
           ++Y  A
Sbjct: 576 HRYKRA 581


>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
 gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 522

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 152/494 (30%), Positives = 230/494 (46%), Gaps = 32/494 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+D R+ DN AL  A       V+ V++  P         A    +++ SL  +  
Sbjct: 24  VVWFRDDQRLADNPALEYATATGH-PVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNA 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G        S      + ++++ +     K+ +NR+Y   +   D  ++  L+ R
Sbjct: 83  ALVALGGELTVLHGSES----QAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKER 138

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIRL 184
            I     +  L   P ++     + ++V++ + +A            A  R    P    
Sbjct: 139 GIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPDN 198

Query: 185 TG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G       ++   +          +   +  GEQ     L  F    +  Y   RD+PA
Sbjct: 199 IGVAARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPA 258

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------SGAFSWLNELIWREF 290
           +Q TS+LSPYL  G LS RQ W+                      SG   +L+EL WREF
Sbjct: 259 MQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWREF 318

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +L+           F    + + W  D+  L+AW+ G TG+P++DA MR+L   GWMH
Sbjct: 319 SYYLLYHCA-PLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGWMH 377

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+TASFLVK LL++WR GE +F   L+D D ASN   WQW A +G D+ PYFRIFN
Sbjct: 378 NRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFN 437

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P +QG++FDPQG ++R W+PEL  VP+  +HAP              L  +YPLP+V H+
Sbjct: 438 PVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQ 497

Query: 465 KACHHTLNQYYAAK 478
           +A    L      +
Sbjct: 498 QARERALKAMEHMR 511


>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 479

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 243/479 (50%), Gaps = 23/479 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            LVW R DLR  D+ ALY A  +S  KV  VF+       Q +  + R+  FI+ S+ ++
Sbjct: 13  SLVWFRRDLRDYDHAALYHALKSSK-KVYCVFVFDTAILNQLNDKADRRVEFIWESVREL 71

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL + G            ++ + +        V  +F N  YE + + RD  + ++L 
Sbjct: 72  KTSLQKHGSDLIVLH----GNAGDEIPKLANTLLVNAVFTNHDYEPSAITRDAHVAEQLN 127

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I    + D V+     +LN + + Y V+TP++   ++ +     ++ PV        
Sbjct: 128 KSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDNHLNNLA 187

Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +P        +    +  M           L     E++  Y + RD PAI+G S 
Sbjct: 188 KTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFIERMSRYKDARDFPAIKGVSY 247

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +S R       +          +GA +WL+ELIWR+FY  ++   PSV  G
Sbjct: 248 LSVHLRFGTISIRHLAREAMQSAN-------TGAQTWLSELIWRDFYVQILHHNPSVAAG 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + +    E +++  D+ L QAW  G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLVKD
Sbjct: 301 RAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +L+D DL++NNGGWQWAASTG D+ P+FRIFNP  Q +RFD QG F
Sbjct: 361 LLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDAQGKF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR ++PEL     + IHAP              +  +Y  P+VDH       L  Y   
Sbjct: 421 IRKYVPELTKCNDKEIHAPWLIPLLRLQELNLSIGKDYAAPVVDHATQRLQALALYKNI 479


>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 597

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 252/486 (51%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI+DNKAL  A      +   +IA+FI +P+ +  H  +  +  F+  +L  
Sbjct: 105 VHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAV 164

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           +++ L++  I           +  + +     +   + ++ N +YE++E  R   ++   
Sbjct: 165 LKEDLAKLDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIRDF 224

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++    ++  D+ ++PPG +   A + Y VYTP+ +A + ++ +               
Sbjct: 225 AENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEKNP 284

Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232
                   + FD                       +P GE  A   L KFC+E +  Y +
Sbjct: 285 ASARKTFKKLFDIDIPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIGNYHK 344

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP+  GTS LS +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 345 KRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVAWRDFY 404

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQ+  +G+MH+
Sbjct: 405 KHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHLGYMHS 464

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI A FL KDLL+DWR GE +FM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 465 RCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 524

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL +   + +H P++         N YP  IV+HK      
Sbjct: 525 LLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKGCRERA 584

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 585 LEAYKE 590


>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
 gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
          Length = 503

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 156/494 (31%), Positives = 234/494 (47%), Gaps = 21/494 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            +++ +   LVWLR DLR+ DN AL+ A      ++I V+I   +   +         ++
Sbjct: 1   MSSSKIPCTLVWLRQDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGKRRTGQACLWWL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           Y SL  ++  LSQ  I           D+   L           +++NR YE  E  RD 
Sbjct: 59  YHSLKSLRNQLSQWNIPLIVKSGK---DAFTILKELLDSYNADAIYWNRCYEPFEYNRDC 115

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADL 174
            +E++L    V  +++ D VL  P +I        ++Y  F           +   +   
Sbjct: 116 SIEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLPQPRKPYDKPKF 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           ++      +   P     + +        +   +  GE+ A+  L+ F K  +  Y E+ 
Sbjct: 176 KNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKS 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYR 292
               +  TS LSPYL  G +SP   W+ ++                  +L  L WRE+  
Sbjct: 236 QCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTC 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  YP +   K F    E+++   D   LQ+W+QG TG+P++DA MRQL+  G M NR
Sbjct: 296 HLLFHYPDLPQ-KCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL+K LLV W+ GEE+F S+L+D DLA N   WQWAA +G ++ PYFR+FNP 
Sbjct: 355 LRMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPI 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
            QG++FD  G ++R W+PEL  +P  YIH P              L   YP PIV HK A
Sbjct: 415 TQGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAA 474

Query: 467 CHHTLNQYYAAKKQ 480
               L  +   K++
Sbjct: 475 RELALATFGQTKRK 488


>gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
 gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
          Length = 480

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/480 (36%), Positives = 261/480 (54%), Gaps = 14/480 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLR+ D  AL+ A  N     IA+ I +PEQW++H  +  +  F    LL+
Sbjct: 4   TYQLIWFRQDLRVRDQAALWHARQN--GPCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I         +DD  E+      +     ++ N ++  NE++RD  +++ L
Sbjct: 62  LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             +             P  SI   +   Y+V+  F+K+  Q L     +  P+P  + T 
Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181

Query: 187 PVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                             + D         + +GE++A ++L +F ++++  Y   RD P
Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +++GTSQLS YL+IG++S RQC            +    G  +WLNEL+WREFY+H++  
Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSEGQQTWLNELLWREFYQHILFD 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V    PF   T+ ++W  DS   + WK+G TG PI+DA MRQL + GWMHNR+RMI 
Sbjct: 302 FPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMIC 361

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++
Sbjct: 362 AMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQK 421

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G +IR W+PEL  +  + IH P++      L L+YP PIVD K +    +  + A 
Sbjct: 422 FDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQAL 479


>gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
 gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
          Length = 583

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 173/489 (35%), Positives = 255/489 (52%), Gaps = 19/489 (3%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL+ A       +  +I ++I +PE    H  S  +      +L Q
Sbjct: 94  VHWFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVDLTLRTLAQ 153

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L++  I                +   C +     LF N +YE++E+RR+  L +  
Sbjct: 154 LQRDLNESDIPLYMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRREARLIRLC 213

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I      D+ ++PPGS+ +   + Y VY+P+ +A +  L +               
Sbjct: 214 AKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEVSEEPGANS 273

Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +    FD                 + +  ++P GE  ALH L  F KEK   Y E
Sbjct: 274 GDARKHFAELFDSEVPQAPANKQLSDSQKEHLSALYPAGEHEALHRLETFLKEKAVEYDE 333

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+I A Q TS LSPY + G LS R    + +    +LL + + G  SW++E+ WR+FY+
Sbjct: 334 DRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWISEVAWRDFYK 393

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D    QAW +G TG P++DAAMRQLN   WMHNR
Sbjct: 394 HVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQLNHDAWMHNR 453

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +S+L KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 454 ARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTL 471
            Q +RFD +G +IRHW+PEL  +    IH P+     +      YP  +VDH ++ +  L
Sbjct: 514 RQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVDHSQSRNRAL 573

Query: 472 NQYYAAKKQ 480
            +Y  A ++
Sbjct: 574 ERYKRASQK 582


>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
 gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
          Length = 469

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
            + I  S  D   + PPGS+     + +KV+TPF++A +       +      A+    +
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   P       +     +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL       + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40]
          Length = 588

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 245/486 (50%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 97  VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 157 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 216

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I      D+ ++PPG + +   + Y VY+P+ ++    L+                
Sbjct: 217 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 276

Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     F              D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 277 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 336

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 337 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 396

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 397 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 456

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF+P 
Sbjct: 457 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 516

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR W+PEL  +    IH P+     +    N YP PIVDH       L
Sbjct: 517 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 576

Query: 472 NQYYAA 477
           ++Y  A
Sbjct: 577 DRYKKA 582


>gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
 gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
          Length = 518

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 163/489 (33%), Positives = 241/489 (49%), Gaps = 29/489 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           + R+  FI AS+
Sbjct: 20  GLVWFRRDLRHFDHAALHYALRHC-REVYCVFVFDRDILDALLARGLQADRRIEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     +  +  +F N   E +   RD+ + K
Sbjct: 79  EELRSALREAGGDLMVVH----DHPRHAIPEIARKLNIEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182
            L Q       F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 VLAQQPCAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPYLG 194

Query: 183 ----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                      P+       +    +  +      +    L    ++++  Y  +RD PA
Sbjct: 195 ALARPPEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEFEDRMDDYHARRDFPA 254

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R    R     +        GA +WL+EL+WR+FY  ++   
Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHAAMLRGS----RGAATWLSELVWRDFYFMILHHR 310

Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLRM 370

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQS 430

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +YIHAP +            L   YP PI+DH  A   
Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGARAA 490

Query: 470 TLNQYYAAK 478
           TL++Y   K
Sbjct: 491 TLDRYAVTK 499


>gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 567

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 169/498 (33%), Positives = 255/498 (51%), Gaps = 24/498 (4%)

Query: 3   ATTAMSVH---LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISAR 56
              AM+ +   + W ++DLR+ DN+AL  A          +I ++I +PE    H  S  
Sbjct: 67  QQNAMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPA 126

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +      +L Q+++ L +  +       +   D    + + C +     LF N +YE++E
Sbjct: 127 RVDLTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDE 186

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174
           +RR+  L +      I  ++  D  ++PPG + +   + Y VY+P+ ++ +  L +    
Sbjct: 187 LRREAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEY 246

Query: 175 --------------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                         R           P TP N           +   FP GE   L  L 
Sbjct: 247 LEVSEDPTSNPGDARRYFKELFECPVPATPENKRFDDVEKADRVRRAFPAGEHEGLRRLE 306

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
               EK   Y ++R+  + + TS+LSPY + G LS R    + +E     + + ++G  S
Sbjct: 307 -EFLEKATAYDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYIS 365

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W++E+ WR+FY+H++  +P +CM K F      I+W+ ++   +AW  G TG+P++DAAM
Sbjct: 366 WISEVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAM 425

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL+   WMHNR RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG 
Sbjct: 426 RQLHATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGV 485

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
           D  PYFRIFNP  Q +RFDP G FIR W+PEL  V    IHAP+     +    N YP P
Sbjct: 486 DPQPYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEP 545

Query: 460 IVDHKKACHHTLNQYYAA 477
           IVDH +     L +Y  A
Sbjct: 546 IVDHARQRGVALRKYKDA 563


>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
 gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
          Length = 477

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 180/475 (37%), Positives = 262/475 (55%), Gaps = 12/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W RNDLR+ D+ AL+ A        IA    +P QW+QH  +  +  F    L Q++
Sbjct: 3   QLIWFRNDLRLNDHAALWHATQA--GSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+   I         + D    + S   +  +  ++ N +  INE+ RD  +++ L  
Sbjct: 61  QELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-------VQADLRSLPVPA 181
                         P GSI N +   Y+V+TPF+K   + L            +    P 
Sbjct: 121 IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPE 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           I       PS     +    Q I   +PIGE  AL++L  F ++K+  Y E RD PA  G
Sbjct: 181 IAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL+IG+LS RQC   + ++          G   WLNEL+WREFY+ L+  +P +
Sbjct: 241 TSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +PF   T+ I WN++    +AW QG TG PI+DA MRQL   GWMHNR+RMI A FL
Sbjct: 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE++FM  L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP  Q ++FDP+
Sbjct: 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G F++ W+PEL ++ +++IH P+++  K +L  NYP PI+D K    + +  +  
Sbjct: 421 GVFLKKWIPELKHLDSKHIHDPYAYQHKTEL--NYPKPIIDLKATRKNAIEVFKK 473


>gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407]
          Length = 584

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 173/492 (35%), Positives = 254/492 (51%), Gaps = 25/492 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR  DN+AL  A      +   +I +++ +P+ W  H  +  +  F+  +L  
Sbjct: 89  VHWFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAV 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L++ GI                + S   +     LF N +YE++E+RR+  + ++ 
Sbjct: 149 LQRDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQC 208

Query: 128 QHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +    D  V+ P       + + Y VYTP+ +A  Q++   +    P+   +  
Sbjct: 209 AAQGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQ 268

Query: 186 GPVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                       D P                +    ++P GE  A+  L  FC E+V  Y
Sbjct: 269 AKTKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADY 328

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWRE 289
            ++RD PA++ TS LSPYL+ GVLS R      ++      L     G   W++E+ WR+
Sbjct: 329 SDERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRD 388

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FYRH++  +P VC  KPF      I W+ +     AW +G TG+PI+DAAMRQLN  GW+
Sbjct: 389 FYRHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWL 448

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI ASFL KDLL+DWR+GE YFM  L+DGD ASN+GGW ++AS G D  PYFRIF
Sbjct: 449 HNRCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIF 508

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465
           NP +Q +RFDP GT+IR W+PEL +      + IH P+         +  YP PIV HK+
Sbjct: 509 NPILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQ 568

Query: 466 ACHHTLNQYYAA 477
           A    L  Y  A
Sbjct: 569 AREAALEAYKKA 580


>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 477

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 154/483 (31%), Positives = 232/483 (48%), Gaps = 24/483 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ + W R DLR+ DN +L AA    D  V+ +FI   +    H   A    +++ +L  
Sbjct: 4   SIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHALNA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL  K        C    D ++ +     +   + +F+NR YE   + RDK+L+  L
Sbjct: 62  LNMSLDGKL-------CVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNL 114

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  I     +  L   P ++L      Y+V+TPF +    N     L      A++L  
Sbjct: 115 TNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQLVA 174

Query: 187 PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               S                 +   + IGE  A+  L  F +  +  Y + R+ PA   
Sbjct: 175 DPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPARPH 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS +L  G +SP   W    E+         +    +L+EL WREF   L+  +P +
Sbjct: 235 TSRLSAHLHWGEISPNMAWYAAIEKRDQAG--FDNDIDVFLSELGWREFSHSLLYHFPHL 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P  +   W  D + L+AW+QG TG+PIIDA MR+L   G+MHNR+RMI  SFL
Sbjct: 293 PRQN-LQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGSFL 351

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+ W  GE +F   L+D DLA+N+ GWQW A  G D+ PYFR+FNP  QG +FD  
Sbjct: 352 VKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFDAD 411

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G++ R ++PEL  +P +Y+ +P              L  +YP PIVD K++    L  + 
Sbjct: 412 GSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAAFA 471

Query: 476 AAK 478
             +
Sbjct: 472 TTR 474


>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
 gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
          Length = 479

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 149/481 (30%), Positives = 232/481 (48%), Gaps = 17/481 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R+DLR+ DN AL+AA   S   ++ +++   E      +      ++  +L  
Sbjct: 4   SPALVWFRDDLRLADNPALHAA-QRSGRPLVLLYLLDEESEGIRPLGGAARWWLGRALAS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +++  KG      +      + E + +   + +   +++NR+Y   E+  D  L+  L
Sbjct: 63  VTEAIEAKGGQLILRR----GKAGEVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALKTEL 118

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183
             + +     +  L   P ++   +   +KV+ PF +   Q+ ++   R           
Sbjct: 119 AQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHDIRRPARVGSHWHFAETP 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +    +          +   +  GE      L  F    +  Y   RD P ++ TS
Sbjct: 179 AGDELRDWKLEPTTPDWAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRDRPDMEHTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP+Q    ++    D      +    +++EL WREF  HL+  +P +  
Sbjct: 239 RLSPYLRFGHLSPQQVLAAVR-HAADAGEVRGTDVEKFVSELYWREFSYHLLFHFPDLAQ 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  EWN+D+ + +AW++G TG+P+IDA MRQL   GWMHNR+RM+ ASFL+K
Sbjct: 298 VN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVAASFLIK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
             LVDWR GE +F   L+D D A+N   WQW A +G D+ PYFRIFNP  QG++FDP G 
Sbjct: 357 HALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGEKFDPDGA 416

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++R ++PEL  +P   IH P              L   YP PIVDH  A    L +Y   
Sbjct: 417 YVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRRALERYQRI 476

Query: 478 K 478
           +
Sbjct: 477 R 477


>gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 478

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 222/483 (45%), Gaps = 21/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHN--------SDAKVIAVFIATPEQWRQHGISARQSHF 60
           + L W R+DLR  DN+ L  A           +D  +I VFI              +  +
Sbjct: 1   MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADG-IIPVFIFDDNALE--HDGNARVQY 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+ +++     +       +     D +  L        V ++ +NR+Y      RD
Sbjct: 58  MLESIAELRSWYRDRDSDLLIAR----GDPVSILPELASTHDVDRVVWNREYSGFAQSRD 113

Query: 121 KLLEKRLQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + +   L    I        +   PGSI  +  + Y VYT F K        A + +   
Sbjct: 114 QQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDAPDA 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   +  S          +    + P G   A + L  FC + +Y Y + RD P+ 
Sbjct: 174 DMFVPDEGIGDSLPTIDSLGFEEPTADIQPAGTNAARNRLSDFCADGIYRYDDDRDYPSR 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              S+LS  LS G +  R          E   +          + ++L WREFY H++ F
Sbjct: 234 DAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTHVLYF 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P V     +  +   I+W  D   LQAWK G TG+PI+DA MRQL +  +MHNRLRMI 
Sbjct: 294 NPEVVTEN-YKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIV 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR G  +F   L D ++A+NNGGWQWAASTG D+ PYFRIFNP  QG+R
Sbjct: 353 ASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGER 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +DP   +I+ ++PEL  VP   IH  H     ++  L  +YP PIVDH K     L  + 
Sbjct: 413 YDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKALEMFE 472

Query: 476 AAK 478
            A+
Sbjct: 473 TAR 475


>gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 481

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 195/487 (40%), Positives = 279/487 (57%), Gaps = 24/487 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W+R DLRI DN AL AA  N      AVFI+TP+QW+QH ++  ++  IY  L 
Sbjct: 1   MS-DILWIRRDLRIHDNPALVAAVENGVTT--AVFISTPQQWQQHHLAPIKADLIYRHLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L++ GI   + +  +FDD    L     Q   T ++ N + E   V      ++ 
Sbjct: 58  QLESQLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPE---VDEQLRDKRL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P      
Sbjct: 115 IASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKL 174

Query: 187 PVTPSNIP------------------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
             TP                       +     +     +P+ +     ++  F   KV 
Sbjct: 175 QQTPLQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVN 234

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR
Sbjct: 235 DYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWR 294

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +FY+HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GW
Sbjct: 295 DFYKHLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGW 354

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRI
Sbjct: 355 MHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRI 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP  Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A  
Sbjct: 415 FNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEARL 474

Query: 469 HTLNQYY 475
             L  + 
Sbjct: 475 RALAFFK 481


>gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
 gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
          Length = 480

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 191/484 (39%), Positives = 269/484 (55%), Gaps = 17/484 (3%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L             +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233
              VP   L G     +          + +    +P+GEQ AL  L +F ++ V +Y  +
Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H
Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+
Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  
Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FD +G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  
Sbjct: 419 QSKKFDLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476

Query: 474 YYAA 477
           +   
Sbjct: 477 FKNI 480


>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
          Length = 464

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 238/475 (50%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+ W R DLR+ DN+AL        + V+ VF+           +  +  F+ ++L  +
Sbjct: 1   MHVHWHRRDLRVADNRALSR-----GSPVLPVFVFDGAVLS--HAAPPRVSFMLSALESL 53

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++S  ++G      +     D  E +          ++ +NR Y      RD  +   L 
Sbjct: 54  RESYRERGGDLLVLR----GDPREEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I +      LL  PGSI  +    Y VYT F K        A   +     +     
Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                IP   D  F+  +   P  G + A  +L  FC++ VY Y + RD PA + TS+LS
Sbjct: 170 EEGIEIPTLADLGFEDPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARESTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           P+L  G +  R+ W   +        +        +  +L WREFY H++   PSV +  
Sbjct: 230 PHLKFGTVGIREVWEATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDTPSVVVEN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I W  D   ++AWK G TG+PI+DA MRQL    W+HNR+RMI ASFL KDL
Sbjct: 290 -YKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G +++  +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RFDP   +I
Sbjct: 349 LVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPDAEYI 408

Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL +VP + +H        ++ +L+ +YP PIVDH +     +  +  A+
Sbjct: 409 KRFVPELADVPPKTVHEWTELDPDERRELAPDYPDPIVDHSERREMAITMFENAR 463


>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 484

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 155/484 (32%), Positives = 225/484 (46%), Gaps = 15/484 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I  P +  Q    A    + 
Sbjct: 8   RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R    +S + ++L  P ++     + YKV+TPF +  +  L   D    P  
Sbjct: 123 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRS 182

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +   ++            Q     +  GE  A  +L  F    +  Y E RD 
Sbjct: 183 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+ 
Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQRSARNGADIDG---YIRQLGWRDFAYHLLH 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P          +        D   L AW++G TG PI+DA +RQL   GWMHNR+RMI
Sbjct: 300 HFPDTTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMI 359

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q +
Sbjct: 360 VASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQY 474
           +FDPQ T+I  W+PEL  +P +   AP         L+  YP  PI+   +     L  Y
Sbjct: 420 KFDPQATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAY 479

Query: 475 YAAK 478
              +
Sbjct: 480 AGTR 483


>gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans]
          Length = 811

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 171/488 (35%), Positives = 253/488 (51%), Gaps = 22/488 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN  L  A      ++  VI V+I +P+ W  H +S  +  F   S+  
Sbjct: 317 IHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKCDFELRSVEA 376

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           + K L++  I       S   +    +     +  V  ++ N +YE +E  R ++L+   
Sbjct: 377 LSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELRREERLVRLM 436

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ  +      D  ++PPGS+     + Y VY+P+ ++ + +L                 
Sbjct: 437 LQKGINFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWLAHLHAHPHLLNERTMPEKNP 496

Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + FD                 +    ++P GE  A+  LR+F  EKV  Y +
Sbjct: 497 SGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAIERLRRFLTEKVAKYND 556

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ P +  T ++S + + G L+ R      ++      L   K G   W++E+ WR+FY
Sbjct: 557 TRNFPNLNSTGRVSAHHAAGTLAARTSVRLARDMNTSKKLDGGKDGIKVWISEVAWRDFY 616

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      IEW  +    ++W QG TG+PI+DAAMR LN   +MHN
Sbjct: 617 RHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYPIVDAAMRSLNQTAYMHN 676

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 677 RLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 736

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSL--NYPLPIVDHKKACH 468
            +Q ++FD +G FIR W+PEL  V    IH P++   K   ++    YP PIV+HK A  
Sbjct: 737 WLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIAKKNRYPEPIVEHKFARE 796

Query: 469 HTLNQYYA 476
             L +Y A
Sbjct: 797 RCLARYKA 804


>gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 591

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 172/485 (35%), Positives = 253/485 (52%), Gaps = 20/485 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN++L  A      +   +IA+FI +P+ +  H  +  +  F+  +L  
Sbjct: 99  VHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRVDFMLRTLHT 158

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L++  I              + +     Q   + LF N +YE++E+RR+  + +  
Sbjct: 159 LRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELRREAKMVRMF 218

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R +  +   D+ ++PPG + + + + Y VYTP+ +A ++++                 
Sbjct: 219 ADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLELCHPPAKNP 278

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           P T       FD                 +    +FP GE  A   L KFC+EKV  Y  
Sbjct: 279 PSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKFCEEKVGQYHN 338

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY
Sbjct: 339 KRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIEGIRVWISEVAWRDFY 398

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KP+ P    IEW+ D    +AW  G TGFPI+DAAMRQ++ +GWMHN
Sbjct: 399 KHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDAAMRQMHAMGWMHN 458

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI A FL KDLL+DWR+GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 459 RCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 518

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  +  + IH P+            YP  IVDHK      
Sbjct: 519 LLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYPQQIVDHKGCRERA 578

Query: 471 LNQYY 475
           L  Y 
Sbjct: 579 LAAYK 583


>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
          Length = 478

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 153/486 (31%), Positives = 234/486 (48%), Gaps = 24/486 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW R DLR+ DN AL  A   S  +V+ ++I   +      +      ++  SL  
Sbjct: 5   TKSIVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWWLNESLRS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S          ++     D +  ++    +  ++ +F+NR YE  +V RDK ++  +
Sbjct: 63  LNES---MNGALCLYR----GDPLGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEV 115

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +      +SF+  +L  P  I       YKV+TPF K         +     V  IR   
Sbjct: 116 RKFGAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYVSKIRFVS 175

Query: 187 PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               +           +     +   +  GE+    +L+ F +  +  Y   RD P  + 
Sbjct: 176 NSKKNREIDSLNLLNENDWSTEMASRWTPGERGGEQVLKLFLERGLCNYKIGRDFPDKEA 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSPYL  G LSP   W+  K     +L   ++ A  +  EL+WRE + + +  Y   
Sbjct: 236 VSRLSPYLHFGELSPNYVWH--KVNNFAVLENIETQAEHFHRELVWRE-FSYSLIHYFPD 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +      +   W K+   ++ W+ G TG+P+IDA MR+L + G+MHNR+RMITASFL
Sbjct: 293 LTYRNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRVRMITASFL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+DWR G E+F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  Q K+FDP 
Sbjct: 353 VKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVTQSKKFDPD 412

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
             +IR W+ EL   P +YIH P S  +         L   YP  IVD K +    L  Y 
Sbjct: 413 AKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSREAALRAYQ 472

Query: 476 AAKKQS 481
           + K +S
Sbjct: 473 SLKGRS 478


>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 478

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 218/483 (45%), Gaps = 22/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VWLR+DLR+ DN AL AA       +  V+I   +      + +    +++ SL  +
Sbjct: 7   TSIVWLRDDLRLDDNPALAAAVDLG-LPLTVVYILDEDSEGVRPLGSASRWWLHHSLASL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      +      +   L           LF+NR+Y + E   D  ++    
Sbjct: 66  ASSLEASGSRLLLQRGP----AEPILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAG 121

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I   S+  ++L  P +I   A   YKV+TPF +A + +    D  S P         
Sbjct: 122 ENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAG 181

Query: 186 --------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     +    +          +   +  GE+ A   L  F +     Y   R+IP
Sbjct: 182 KTGSGPAGDALETWRLFPSSPDWSGGLAKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            ++GTS+LSP+L  G +SP + W  ++  F   +    +    + +EL WREF  HL+  
Sbjct: 242 GVEGTSRLSPHLRFGEVSPFRVWREIRGRFPREV---PADVGIFRSELGWREFCWHLLYT 298

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +        +            L AW+QG TG+P +DA MRQL   GWMHNR+RM  
Sbjct: 299 NPDLATRNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMAA 358

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK+LL DWR GE +F   L+D D ASN   WQW A +G D+ PY+RIFNP  Q K+
Sbjct: 359 ASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSKK 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G ++R ++PEL  +  + IH P    D       YP P+VD   +    L  Y   
Sbjct: 419 FDAAGNYLRQYIPELAGLEAKAIHEPWKAADGL---HGYPRPLVDLPGSRERALAAYQKL 475

Query: 478 KKQ 480
           K  
Sbjct: 476 KDS 478


>gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 466

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 225/478 (47%), Gaps = 17/478 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR TDN  L AA   +D+ V+ VF+           +  +  F+  +L  +
Sbjct: 1   MRIHWHRRDLRTTDNAGLAAA--TADSPVVPVFVFDDAVLD--HAAPPRVAFMLDALDSL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +     +G            D    +           + +   Y    + RD  + + L 
Sbjct: 57  RAQYRDRGSDLVIAH----GDPTAEIPRLAEAFGADGVTWGEAYSGLGIERDIAVRQALD 112

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + +      +   PG I  +    Y V+T F +       +        P       
Sbjct: 113 DVGVEREAVTDSVHHRPGEITTNDGDPYSVFTYFGRKWHDREKEDPY---DAPGPDELAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V+   +P   D  F+      P  G + A  +L  FC++ +Y Y ++RD PA   TS+LS
Sbjct: 170 VSGDPLPSVGDLGFEEPQAEIPPAGTEPARELLDAFCEDDIYRYEDRRDYPADDCTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            +L  G +  R+ + R          + +      + ++L WREFY  ++    SV    
Sbjct: 230 AHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYTQVLFANRSVVTDN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   ++W  D   LQAWK G TG+PI+DA MRQL    ++HNR+RMI ASFL KDL
Sbjct: 290 -YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNRVRMIVASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 349 LIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 408

Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           + ++PEL +     IH     S   + + +  YP PIVDH +     L  +  A+ +S
Sbjct: 409 KTYVPELRDAEPSVIHEWPDLSLTQRRNAAPEYPDPIVDHSERRDQALEMFETARGES 466


>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 473

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 233/482 (48%), Gaps = 24/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW+R D RI  N+AL  A  N +  V A++I  P+ + +      Q  ++  SL  + 
Sbjct: 5   AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKR--EAQKWWLSKSLENLS 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +  I  +        D +E L     +  VT  +          +  K+ +  +++
Sbjct: 62  IDLKKLNITLEVQ----LGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKN 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAIRL 184
            +  K F  ++L+    +       YKV+TPF K   Q+ +             +  I +
Sbjct: 118 EIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINI 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                            +  +  +   E+ A   L++    K+  Y + RDIP + GTS+
Sbjct: 178 FKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSK 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +     W + ++  V        G   ++NEL WREF   L+ ++P +  G
Sbjct: 238 LSPFLKFGQIHVETIWKKCQDIKVKK-----IGYRKYINELGWREFSHSLINYFPQMLKG 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+RMI ASFLVK 
Sbjct: 293 N-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVKH 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +QG++FD  G +
Sbjct: 352 LRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKDGIY 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
            + W+PEL N+P ++++ P     K        + +NYP PI+DH +A +  L+ +   K
Sbjct: 412 TKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEARNAALDAFKTIK 471

Query: 479 KQ 480
           K 
Sbjct: 472 KN 473


>gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
 gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
          Length = 479

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 189/481 (39%), Positives = 260/481 (54%), Gaps = 15/481 (3%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV  LVW R DLRI D+ AL+ A        IA+   +P QWRQH  +  +       L
Sbjct: 1   MSVYQLVWFRQDLRIVDHSALWHARQT--GPCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L Q  I         + +  E+L   C    V ++  + +  INE +RD+  ++
Sbjct: 59  KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178
            L    I  +        P GSI N   Q Y+V+  F+KA    L  A  +         
Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178

Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +PA+       P           ++I  ++P  E +A  +L +F +  + +Y  +RD
Sbjct: 179 PITLPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA  GTSQLS YL+IGVLS RQC   L        +  + G   WL+EL+WREFY+H++
Sbjct: 239 FPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHIL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P+V    PF      I W  D   L AW+QG TG PI+DA MRQL   GWMHNR+RM
Sbjct: 299 YLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITA FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP  Q 
Sbjct: 359 ITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++FDP+G +IR W+PEL ++  + IHAP+       L  +YP PIVD K +    ++ + 
Sbjct: 419 RKFDPEGQYIRTWIPELAHLDAKTIHAPYESKTVQQL--DYPKPIVDLKYSRARAIDHFK 476

Query: 476 A 476
            
Sbjct: 477 Q 477


>gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
 gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
          Length = 469

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 187/473 (39%), Positives = 274/473 (57%), Gaps = 11/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W+R DLR  DN AL  A  N      A+FI+TP+QW  H  +  +  FI   LLQ+
Sbjct: 1   MVLLWIRRDLRCFDNPALMDAVANGCR--YALFISTPQQWDLHHEAPIKLDFIRRHLLQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L + G+   +   ++F    E L  +C +  + ++  N + E       +     L 
Sbjct: 59  EQQLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPE---FNEQQRDRSLLS 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  + +D  V+ P G +LN + +M+KV+TPF+KA ++++ +  +  +  P        
Sbjct: 116 SGLDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQGLSKPLS 175

Query: 189 TP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            P                  ++   +P+ ++    ++  F   KV  Y E+RD PAI+GT
Sbjct: 176 PPARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG LSPR  + +L   +  L+      AF WLNELIWR+FY+HL+  YP + 
Sbjct: 236 SGLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F+    K +W        AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL 
Sbjct: 296 KQTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G
Sbjct: 356 KHLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            FIR +LPELN++PT+YIH PH ++ K+ +S  Y  P+V+HK A    +  Y 
Sbjct: 416 DFIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAARLRAIAFYK 468


>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 184/467 (39%), Positives = 263/467 (56%), Gaps = 9/467 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+  N+AL  A +N      A+F  + +QW+QH  +  Q   +   +  +Q 
Sbjct: 4   LFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQS 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  GI     +  +F D    L ++C    V  +  N +YE+NEV RDK +       
Sbjct: 62  QLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDEL 121

Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +   + P G++ N + +MYKV+TPF++A ++            P         
Sbjct: 122 SITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQWPLT-----SD 176

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           P                 +P+ ++    ++  F  +K+  Y +QRDIP+++GTS LSPYL
Sbjct: 177 PIEFDESDLLKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGLSPYL 236

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++G++S +Q    +++ + D+L   KS  F+W+NEL+WREFYRHL+A +P +  G  F  
Sbjct: 237 ALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGDNFNE 296

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               + W K     +AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K LL+DW
Sbjct: 297 KYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLIDW 356

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR +L
Sbjct: 357 REGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFIRKYL 416

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           PEL NVP ++IH PH++L         Y   IVDHK A    L  + 
Sbjct: 417 PELENVPDKHIHFPHTYLAATGKDKECYWPAIVDHKAARERALAAFK 463


>gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
 gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
          Length = 475

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 191/476 (40%), Positives = 270/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + +   C Q +V  + +N +Y INE +RD      L+
Sbjct: 59  RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I        L   PG+IL  +   ++V++ F+K  +++L ++          +    
Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVERQAPLQ 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    F+ P +A+   +P GE  A   L +F  E +  Y + RD+PA  GTSQ
Sbjct: 179 IQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKHGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHWLPEL ++  + IH P    D    + +Y  P+V    +    L  +    ++
Sbjct: 419 IRHWLPELRDMDEKTIHEPMK-SDDLFANNSYHRPMVILGSSRQRALEAFKGLPRR 473


>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
 gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
          Length = 497

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 170/495 (34%), Positives = 233/495 (47%), Gaps = 38/495 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR  D+ ALY A   +  +V   F+   E       + R+  FI  SL+ + 
Sbjct: 12  ALVWCRRDLRAHDHAALYHALRAA-RRVWVAFVFDTEILDPLPRTDRRVEFIRDSLVDLD 70

Query: 70  KSLSQKG-------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L   G       +            + + +        V  ++ N  YE   V RD  
Sbjct: 71  AQLHTLGRSHGTEGVGLIVRH----GRARDEIPRLAAALHVQAVYANTDYEPAAVARDAQ 126

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +   L    I      D V+     +L  A   Y V+TP++ A ++ L          P 
Sbjct: 127 VRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKL--EPFYLQAYPV 184

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP---------IGEQNALHILRKFCKEKVYYYVE 232
            R  G + P         P  A     P          G      +L  F  E++  Y +
Sbjct: 185 GRHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERIDRYDQ 244

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G LS R+      +           GA  WL+ELIWR+FY 
Sbjct: 245 TRDFPAVKGPSYLSVHLRFGTLSIRELARLAWDRARAGS----RGAEVWLSELIWRDFYH 300

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++  +P V + + F P  +KI+W    H      AW +G TG+P++DAAM Q+N  G+M
Sbjct: 301 QVLHHHPQV-VERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAMLQINQTGYM 359

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIF
Sbjct: 360 HNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGCDAQPYFRIF 419

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP  Q ++FD QG FIR +LP+L  +P   +HAP              L  +YP PIV H
Sbjct: 420 NPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGRDYPEPIVRH 479

Query: 464 KKACHHTLNQYYAAK 478
           + A   TL +Y   K
Sbjct: 480 ELARERTLARYAVVK 494


>gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
 gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
          Length = 502

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/473 (39%), Positives = 267/473 (56%), Gaps = 7/473 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R+DLR+ DN AL AA   S+  V+AVF+ +  QW +HG  A +  F +  +L
Sbjct: 1   MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   GI   +    +F  + + L +   +    +L +N +Y +NE RRD  +   
Sbjct: 59  ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   +      D V   PG +       Y ++TPF KA  + +    L    +PAI+ +
Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV     P           P  +P GE  A   L +F + +  +Y E+RD PA  GTS 
Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++S RQC      E    L +  +G  +W+NELIWREFY+H++  +P VC  
Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W  D+   +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL K 
Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +F+  L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP  Q +RFDP G F
Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I  WLPEL ++P +  H P     +   +  YP+PIV+H+ A    L  +   
Sbjct: 419 IAEWLPELADLPAKERHDP---SPEQRAARRYPMPIVEHRAARARALEAFKGL 468


>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 473

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 148/482 (30%), Positives = 233/482 (48%), Gaps = 24/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW+R D RI  N+AL  A  N +  V A++I  P+ + +      Q  ++  SL  + 
Sbjct: 5   AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKR--EAQKWWLSKSLENLS 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +  I  +        D +E L     +  VT  +          +  K+ +  +++
Sbjct: 62  IDLKKLNITLEVQ----LGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKN 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAIRL 184
            +  K F  ++L+    +       YKV+TPF K   Q+ +             +  I +
Sbjct: 118 EIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINI 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                            +  +  +   E+ A   L++    K+  Y + RDIP + GTS+
Sbjct: 178 FKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSK 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +     W + ++  V        G   ++NEL WREF   L+ ++P +  G
Sbjct: 238 LSPFLKFGQIHVETIWKKCQDIKVKK-----IGYRKYINELGWREFSHSLINYFPQMLKG 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+RMI ASFLVK 
Sbjct: 293 N-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVKH 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +QG++FD  G +
Sbjct: 352 LRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGIY 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
            + W+PEL N+P ++++ P     K        + +NYP PIVDH +A +  L+ +   K
Sbjct: 412 TKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEARNAALDAFKTIK 471

Query: 479 KQ 480
           K 
Sbjct: 472 KS 473


>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
 gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
          Length = 488

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 223/476 (46%), Gaps = 18/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN ALY A       ++ VFI   +        A    ++  SL  +  
Sbjct: 12  VLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDP--DRPAGAASLWWLDKSLRALDD 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++G      +     DS+  L S         LF NR +E     RD  +   L+  
Sbjct: 69  SLRERGSRLILRR----GDSLTQLQSLIEDTGADALFMNRLFEPAAFARDAEIAHELKSA 124

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +     +  LL     + +               +    +    +     I     V  
Sbjct: 125 GVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRIATPDAVQT 184

Query: 191 SNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            +I  +  +P ++       +  GE  A   L  F    +  Y + RD PA+  TS+LSP
Sbjct: 185 ESIDDWRLHPTRSDWSKGFDWTPGEAGADAALSDFLARGLKTYAKGRDHPALPTTSRLSP 244

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +SP +   +      D    P   A  ++ EL WR+F  HL+  +P     + F
Sbjct: 245 HLHWGEISPWR-AAQRARGAADAGAVPAGEADKFVAELGWRDFSAHLLHHFP-TITDRAF 302

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  E + W  D   L+AWK+G TG+P++DA MRQL T GWMHNR+RM+ ASFLVK LL+
Sbjct: 303 RPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVVASFLVKHLLI 362

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE +F   L+D DLASN   WQW A +G D+ PYFRIFNP  QG++FD  G ++R 
Sbjct: 363 DWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEKFDATGGYVRR 422

Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PEL  +P +++ +P +            L  +YP PI+DH +A    L+     
Sbjct: 423 WVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARALDALKTV 478


>gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina
           98AG31]
          Length = 578

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 164/497 (32%), Positives = 241/497 (48%), Gaps = 24/497 (4%)

Query: 3   ATTAMSVHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58
                 + + W+R  DLR+ DN+AL AA   +    A +I + I +P  +  H  SAR+ 
Sbjct: 60  KNDKKPIVVYWMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRI 119

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L+ ++  L +  I              + +        VT++F N ++E++E+R
Sbjct: 120 DFVLRNLIDLRLRLRELNIPLYTISIEKRKTIPKRVVELLNAWEVTRIFANIEHEVDELR 179

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RD  L      + I         L     +              +    N++ +DL +  
Sbjct: 180 RDIELINLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNWANIINSDLSNHL 239

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233
             A  + G    +         F+   P F  G +      ++           +     
Sbjct: 240 DAAPEIKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTI 299

Query: 234 -------RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAF 279
                  R+ P + GTS+LS YL+ G++SPR C     E+             +  +G  
Sbjct: 300 LEEYSTLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIG 359

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            W +EL WR+FY+H++A +P V MG+ F    + + W KD   L+AWK G TGFP IDA 
Sbjct: 360 MWQSELGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDAC 419

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL  +G+MHNR RM  A FL KDLL+DWRIGE++FM  L+DGDL SNNGGWQW++STG
Sbjct: 420 MRQLLEMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTG 479

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPL 458
            DS PYFRIF P  Q ++ DP G FIR ++PELN++  + IH P+  L  +      YP 
Sbjct: 480 CDSQPYFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPK 539

Query: 459 PIVDHKKACHHTLNQYY 475
           PIVDH       L +Y 
Sbjct: 540 PIVDHSVVRKRALVRYK 556


>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
 gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
          Length = 484

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 140/486 (28%), Positives = 214/486 (44%), Gaps = 19/486 (3%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     ++W R+DLR+ DN A  AA   S  +V+A+++   +      +      ++  
Sbjct: 1   MSAAGTAVIWFRDDLRLADNPA-LAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAG 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  ++  L Q G+     +     ++   +           + +N +    E   D+ +
Sbjct: 60  SLRALKAELGQHGVPLVLRR----GEAGRIVPDVARAAGADLVAFNWRAGKAEQAVDEAV 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL----QMYKVYTPFRKALIQNLVQADLRSLPV 179
            + L    +        LL     +        + +  +               +  L  
Sbjct: 116 ARHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKGRDIGRTLPVPRLNG 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A      +    +          +   +  GE  A   L  F  + +  Y E RD P  
Sbjct: 176 AAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDRPDQ 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S+LSPYL  G +SPRQ          D    P      +  EL WREF  HL+   P
Sbjct: 236 THVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFAVP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +          +   W +    L+ W++G TG+PI+DA MRQL   GWMHNR+RMI AS
Sbjct: 295 DLARRN-LQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+ W+ GE +F   L+D DLA+N   WQW A +G D+ PYFRIFNP +QG++FD
Sbjct: 354 FLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFD 413

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQY 474
           P+GT++R ++PEL +VP + IH P S   +       L  +YP P+V+H  A    L  +
Sbjct: 414 PEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRALRAF 473

Query: 475 YAAKKQ 480
              +K 
Sbjct: 474 EHTRKD 479


>gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 462

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 210/473 (44%), Gaps = 23/473 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ D     AA  +  A  +A+F+  P           +  F+Y  L  + 
Sbjct: 5   SVVWFRRDLRVRDQPIFLAAADSGPAA-LALFVLDPALLD--PSGPARRTFLYGCLRALD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            +L   G      +     D  + +           +     +     RRD+ +E+ L  
Sbjct: 62  DAL---GGRLLVVR----GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAV 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                        + PG +       ++V+TPFR+   +   +    +       +    
Sbjct: 115 DGRELVRTGSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAATVRWIDPSD 174

Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             S          + +D   P  GE  A    + F  + V  Y E R+ P ++GTS++S 
Sbjct: 175 EGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMSV 234

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G + PR   + L              A ++  EL WREFY  ++   P        
Sbjct: 235 YLKWGCIHPRTMLHDLSRHRSG-------SAETYRTELAWREFYADVLFRRPDSARHNYD 287

Query: 308 IPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +         +   L  AW++G TGFPI+DA MRQL    WMHNRLRMI ASFLVKDL
Sbjct: 288 RAFDALPSASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASFLVKDL 347

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G  +FM  L+DGDLASN  GWQW A +G D  PYFRIFNP  QG+RFDP G ++
Sbjct: 348 HLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDPDGDYV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL +VP + +H P    D   +   YP PIVDH+      L +Y   K
Sbjct: 408 RRFVPELADVPGRAVHQPWKLPD--GVPDGYPQPIVDHRAERDEALARYERVK 458


>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
 gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
          Length = 472

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 215/475 (45%), Gaps = 19/475 (4%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           WLR DLR+ DN AL AA       V+A+F+      R       +  F+Y  L  + + L
Sbjct: 3   WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCR--PAGPVRLAFLYRCLRDLDRRL 58

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           +          C    D  + + +   +     +     +     RRD+ + + L     
Sbjct: 59  A-------GRLCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111

Query: 133 C-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             +    +  + PG ++      Y+V+TPF +A   +     +   P     L       
Sbjct: 112 ELRRTGSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAHGWPEPVAPAPTEPDWLDPASLSG 171

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
                   P      + P GEQ A   L  F +  +  Y   RD PA   TS+LSPYL  
Sbjct: 172 GSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADVTSRLSPYLKW 231

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           G + PR   + ++            GA      + +E+ WREFY  ++A  PS       
Sbjct: 232 GCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAANPSSARSD-L 290

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                ++ +       +AWK G TG+PI+DA MRQL   GW+HNR+RMI ASF+ KDL V
Sbjct: 291 SETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLHV 350

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP  QG+RFDP G +IR 
Sbjct: 351 HWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFDPDGEYIRR 410

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+PEL  +P + +H P               PIVDH       L ++  A+  S 
Sbjct: 411 WVPELRGLPAELVHEPWKCPGGPPNGYP--GPIVDHAVERRDALARHAQARNASA 463


>gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 468

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/471 (39%), Positives = 269/471 (57%), Gaps = 6/471 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   + 
Sbjct: 1   MNT-LFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRIT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI         F D    L  +C    V  +  N +YE+NEV RDK +  +
Sbjct: 58  YLHQQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAK 117

Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                I  +  +   + P GS+ N + +MYKV+TPF++A ++  ++        P   ++
Sbjct: 118 CDELSITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHVS 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G    S           + +   P+ ++    ++  F  +K+  Y + RDIP+I+GTS L
Sbjct: 178 GGAQLSKNETNLLKGDSSSEKW-PVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGL 236

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G++S +Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A +P +  G 
Sbjct: 237 SPYLALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGD 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F      + W       +AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K L
Sbjct: 297 NFNEKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FI
Sbjct: 357 LIDWRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           R ++PEL NVP ++IH PHS+L     S + Y   IVDHK A    L  + 
Sbjct: 417 RKYIPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAFK 467


>gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
 gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
          Length = 527

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/491 (22%), Positives = 168/491 (34%), Gaps = 29/491 (5%)

Query: 1   MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M   + M   V +VW + DLR  D+  L  A       V+ +++  P+ W Q  +S R  
Sbjct: 1   MGDRSNMRAPVQIVWFKKDLRTYDHAPLLKAAQA--GPVLPLYVIEPKLWMQPDMSGRHF 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL+ ++  L   G+          DD I  L     +  +  L+ + +       
Sbjct: 59  AFLKESLVDLRDDLQGLGVRLVL----KVDDIIHVLTDLKSRHAIAALWSHEETGNGWTF 114

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                             +         +        +  T              +   P
Sbjct: 115 ARDKRVSAWCRASGVHWHELRQTGVVRRLKGRTGWARQWDTVMGD---------PIAHRP 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                +  P  P                    G Q AL  L  F   +   Y      P 
Sbjct: 166 QNIAAVLEPSDPFPSQHELGLNPDPCPYRQTGGRQAALATLDSFLTRRGRPYQCAMSSPV 225

Query: 239 --IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S+LSP+++ G LS R+      +    L   P  G  SW + +       H   
Sbjct: 226 TAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAMRSFSGRLHWHC 285

Query: 297 FYPSVC-------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            +                  +        D  L QAWK G TG P +DA MR L+  GWM
Sbjct: 286 HFMQKLEDEPRLEFENLHQAYDGLRPSVPDETLFQAWKAGETGLPFVDACMRALSATGWM 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           + R+R +  +     L +DWR    +      D +   +    Q    +G   +   RI+
Sbjct: 346 NFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIHWP--QVQMQSGTTGINTVRIY 403

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH 468
           NP  QG   DP G F+R W+PEL ++  Q+IH P    +    L   YP P+VDH  A  
Sbjct: 404 NPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEPWKADNAGRVLGKRYPFPVVDHLSAAK 463

Query: 469 HTLNQYYAAKK 479
               + +A +K
Sbjct: 464 EAREKVWAIRK 474


>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 465

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 156/474 (32%), Positives = 228/474 (48%), Gaps = 16/474 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR TDN  L AA  +    V+ VFI              +  F+  +L  +
Sbjct: 1   MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLD--HAGPPRVAFMLDALDSL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++    KG      +     D    L     Q    K+ + + Y      RD  + + L 
Sbjct: 57  REWYRDKGSDLVVAE----GDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + +    + +   PG I  +    Y V+T F +        A       P+      
Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDREKAAPY---DPPSADTLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V    +P   D  F+  +   P  G + A  +L  F  E VY Y E+RD PA + TS+LS
Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +  R+ ++R +          +     + ++L WREFY  ++  +P V     
Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +  +   IEW  D  LLQAWK G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL
Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+ +DP   +I+
Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408

Query: 427 HWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL +   + IH  +  S   +   +  YP P+VDH +     L  +  A+
Sbjct: 409 EYVPELRDAAPEIIHDWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462


>gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 499

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/482 (24%), Positives = 198/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  V  ++ + +   N   +  +  ++  
Sbjct: 59  NTELTKLGQSLII----MVGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++       K    + K + + L++A      +   +   P 
Sbjct: 115 K----QNNITWHQPYQNGVVRCLADRDKWALLWHKRMSEKLIKAPTELKFICENQTKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             +    +              G   AL IL  F  E+   Y ++   P       S+LS
Sbjct: 171 AENLGLEY-----DNSYKRQKGGRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ +    +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWRI   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRITSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR W+PEL NV  + IH P          ++YP PIVD K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWVPELENVTDENIHTPWLEKHNA---VDYPDPIVDEKQARKFAADNVYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 NS 462


>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
 gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Frankia alni ACN14a]
          Length = 451

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 223/475 (46%), Gaps = 26/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + WLR DLR++D+ AL AA   +D  V+ +F+       +      +  F+Y  L 
Sbjct: 1   MTVSVCWLRRDLRLSDSPALCAAVDGADD-VLVLFVLDDAL--RRPAGPVRLAFLYRCLR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L   G      +     D ++ +          ++  +  Y     RRD  +E+ 
Sbjct: 58  ELDDRL---GGRLCVRR----GDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+              + PG +       ++V+TPF +A  ++  +  +         L 
Sbjct: 111 LRAGGRELVRTGSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWRRPVAEPVGARWALL 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                         P      +   GE+ A   L +F    +  Y E+RD+P    TS+L
Sbjct: 171 AS------DGIPADPDLGGTRLPAAGERAARERLAEFLAGSLTGYAERRDVPGQDTTSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G + PR     L              A  + +EL WREFY  ++A  P+     
Sbjct: 225 SPYLKYGCIHPRTVLAELDRATS------PRDAEKFRSELAWREFYAEVLAANPASARAD 278

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   ++      +AWK G TGFPI+DA MRQL   GW+ NR+RMI ASF+ KDL
Sbjct: 279 LTGALADM-AYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V W  G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNP  QG R+DP GT++
Sbjct: 338 HVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTYV 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+P+L +VP   +H P +          YP P+VDH      +L +Y AA+++
Sbjct: 398 RRWIPQLRDVPAAKVHEPWTLPGGPPAG--YPAPVVDHATERRESLARYEAARRR 450


>gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88]
 gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger]
          Length = 584

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 250/486 (51%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+ L  A          ++ ++I +PE    H  SA +   +  +L  
Sbjct: 95  VHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLEL 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ LS+  I          +D  + +   C +   T LF N +YE++E+RR+  L +  
Sbjct: 155 LRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVRLC 214

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++ +  ++  D+ ++ PG +++   + Y VY+P+ +A    L +               
Sbjct: 215 ARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEPGSNP 274

Query: 187 PVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +    F                       ++P GE  AL  L  F +EK   Y +
Sbjct: 275 GDARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALRRLEAFLEEKANDYDD 334

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  A + TS LSPY + G LS R    + +++    L + ++G  SW++E+ WR+FY+
Sbjct: 335 LRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEVAWRDFYK 394

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    + W+ +     AW +G TG+PI+DAAMRQ+    WMHNR
Sbjct: 395 HVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKHAAWMHNR 454

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 455 TRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 514

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP+G +IR W+PEL  +    +H P+     +    N YP PIVDH ++    L
Sbjct: 515 RQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHSESRDRAL 574

Query: 472 NQYYAA 477
             Y   
Sbjct: 575 ENYKKV 580


>gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
 gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
          Length = 469

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 180/475 (37%), Positives = 267/475 (56%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W R DLRI D+ AL+ A        IAV + +PEQW+ H  +  +  F    L  +
Sbjct: 1   MQLIWFRQDLRIHDHAALWHATQQ--GSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L+Q  I         + D    + S C + ++  L  N +  +NE++RD  +++ L+
Sbjct: 59  KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAI 182
            + I           P  SI N + Q Y++Y+ F+K   + L+Q             P  
Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQNIPGCYPDIQAQDPVE 178

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 +        +Y       ++P  +  AL +L  F ++K+ +Y  +R++PA+ GT
Sbjct: 179 LPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPAVDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+IG+LS RQC   L ++    +     G  +WL+EL+WREFY H +  +P V 
Sbjct: 239 SRLSPYLNIGILSIRQCMQTLFKDSYFQIDDI--GQQTWLDELLWREFYLHTLFDFPRVS 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF   T+ I+W      L AW+QG TG PI+DA MRQ+   GWMHNR+RMITA FL 
Sbjct: 297 RHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMITAMFLC 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR+GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FDP G
Sbjct: 357 KNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQKFDPNG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +IR W+PEL ++  + IH P++     DL+L+YP PIVD K +    +  +   
Sbjct: 417 DYIRQWVPELTHLNAKSIHEPYA--KNPDLALDYPKPIVDLKASRVRAIEAFKQI 469


>gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
          Length = 520

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 155/484 (32%), Positives = 224/484 (46%), Gaps = 15/484 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I  P +  Q    A    + 
Sbjct: 44  RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWR 102

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD 
Sbjct: 103 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 158

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R    +S + ++L  P ++       YKV+TPF +  +  L   D    P  
Sbjct: 159 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRS 218

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +   ++            Q     +  GE  A  +L  F    +  Y E RD 
Sbjct: 219 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 278

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+ 
Sbjct: 279 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQRSARNGADIDG---YIRQLGWRDFAYHLLH 335

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P          +        D   L AW++G TG PI+DA +RQL   GWMHNR+RMI
Sbjct: 336 HFPDTTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMI 395

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q +
Sbjct: 396 VASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 455

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQY 474
           +FDPQ T+I  W+PEL  +P +   AP         L+  YP  PI+   +     L  Y
Sbjct: 456 KFDPQATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAY 515

Query: 475 YAAK 478
              +
Sbjct: 516 AGTR 519


>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 471

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 199/474 (41%), Positives = 266/474 (56%), Gaps = 10/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F++TPEQWR+H +S  Q+  I   L+ +++
Sbjct: 3   LVWFRRDLRTLDHTALKAALETGQ-PVVAGFVSTPEQWREHNMSPMQADLIARRLVLLEE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I   Y +   F D  + +  + +   V  +  N  YE+NE   D+ +   L   
Sbjct: 62  ELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLNES 121

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            I         +  P ++LN   + +KV+TPF++A +       V        +    L 
Sbjct: 122 SITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWKPEPQAALSKEVLQ 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                           +     + +     L  LR F +E+   Y  +RD PA+ GTSQL
Sbjct: 182 AVKADRYHVDVSFSYPRESSERWHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC  RL  E          G  +WL+E+IWREFY+HL+ F P +  G+
Sbjct: 242 SPYLAIGALSPRQCIARLHAENP--HTDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGQ 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            FI W +KIEW+ D    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 300 GFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  GTF+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHDGTFV 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHW+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 420 RHWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 490

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 152/495 (30%), Positives = 224/495 (45%), Gaps = 28/495 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIA--------TPEQWRQHGISAR 56
           M+  +VW R DLR+ D+ AL AA         +I V+I         T +  +     A 
Sbjct: 1   MTT-IVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAA 59

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
              + + SL  + + L+  G      Q     + +  L     + +  ++ +NR+ E   
Sbjct: 60  ARWWRHHSLRSLAERLASCGSRLIIRQ----GEPLAELQRLIHETKANRVVWNRRMEPAA 115

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
              D  ++  L+   I     +      P +I N   + +KV+TP+ KA++   +     
Sbjct: 116 RAEDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTY 175

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVE 232
             P     +   +    I      P  A D  F    Q          ++    +  Y E
Sbjct: 176 PEPDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLPLIDEYAE 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+     G S+LS +L  G +SPRQ    L +      +    G   ++ EL WREF  
Sbjct: 236 ARNHLIGTGVSKLSAHLHFGEISPRQIVRYLLD--TRGSVLEPRGIEHFVRELGWREFGA 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +L   YP   +  P        +W      L+AW++G TG P++DAAMR L   GWMHNR
Sbjct: 294 YLAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL K+LL+DWR G  +FM  L+D D  SN  GWQW A TG D+ PYFRIFNP 
Sbjct: 353 ARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPV 412

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           +Q ++FDP GTFIR W+PEL  +  +Y+ AP +  +         L   YP PI D K +
Sbjct: 413 LQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVS 472

Query: 467 CHHTLNQYYAAKKQS 481
               L  +   K+ +
Sbjct: 473 RQRALVHFDQIKQNT 487


>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
 gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
          Length = 462

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 219/469 (46%), Gaps = 24/469 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66
            + L   R DLR+ DN +L  A  + + +VI  FI    Q + +   S     F+ A L 
Sbjct: 16  KIGLHIFRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLK 74

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L Q      + +        + ++S      +  +F N+ Y     +RD  ++  
Sbjct: 75  ELNDQLHQLNARLYFFEGLT----AKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAI 130

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   +       VLL   + +     M  +         + +   + +           
Sbjct: 131 CERERVDFKEHFDVLLHEPTEVLKDNGMPYIKFTDFLKKSKKIDVREPQKNKFKNYFTEE 190

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +        + +             +       K+  Y E R+ P+I GT++LS
Sbjct: 191 ISSSIALQVDKFPQNENLILKG----GRKEGLSYIERIVKLKNYSETRNTPSIDGTTKLS 246

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S R+ + ++ E F +            + +L WR+F+ H++  +P V  G  
Sbjct: 247 PHLKFGTVSVREVYGKVNENFGNE--------HEIITQLHWRDFFTHILYHFPHVL-GNS 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F     +I+W  D    +AW  G TG+PI+DA MRQLN  GWMHNR+RMIT SFLVKDL 
Sbjct: 298 FKEKYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDLH 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF  +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+  +I+
Sbjct: 358 IDWRWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIK 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            WLPEL N+  + IH            ++YP PIVDHK A       Y 
Sbjct: 418 TWLPELTNLNLEQIHT-----LNIPKDIDYPTPIVDHKVASEKAKKLYK 461


>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
 gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
          Length = 475

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 224/483 (46%), Gaps = 23/483 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR++DN AL AA    D  V+ ++I   +   +  +      +++ SL  
Sbjct: 4   PLVIHWFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL+        ++     + +E L     +  VT + +NR YE   ++RD+ +++ L
Sbjct: 62  LDASLTA---CLNLYK----GEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTL 114

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181
           +   I     ++ L   P  I       YKV+TPF +                       
Sbjct: 115 KEIGIQVQSYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEMPRQPLPRPDNQAVYL 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               G               +    ++ IGE  A     KF +E +  Y E R+IP+   
Sbjct: 175 KDDKGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKPF 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            ++LSP++  G +SP Q W  ++    +  +           E  + + + +        
Sbjct: 235 VTRLSPHIHFGEISPNQLWYGVQSVADNEHVDHFCS-ELGWREFSYSQLFVNPSL-PTHN 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K       + + +    LL+AW+QG TG P++DA MR+L   G+MHNR+RMI ASFL
Sbjct: 293 LQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRMIVASFL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+L + W  GE +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP +QG+RFD +
Sbjct: 353 VKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQGQRFDAE 412

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G +I+ ++PE++ +P +Y+ +P    +         L   YP PI+D K +    L  + 
Sbjct: 413 GDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREAALEAFK 472

Query: 476 AAK 478
           + K
Sbjct: 473 SLK 475


>gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 771

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 167/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+AL  A   +   +  ++ ++I +P+    H  S  +  F   +L  
Sbjct: 278 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 337

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L
Sbjct: 338 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 397

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q    +L V       
Sbjct: 398 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 457

Query: 187 PVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             +  +                        Q  + M+P GEQ A   L +F   +V  Y 
Sbjct: 458 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 517

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           ++R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY
Sbjct: 518 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 577

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HN
Sbjct: 578 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 637

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 638 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 697

Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469
            +Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +   
Sbjct: 698 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 757

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 758 ALKRYKE 764


>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
 gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
           CN-32]
          Length = 493

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%)

Query: 4   TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55
              M+       L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++ 
Sbjct: 5   KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAP 64

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            Q  FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EIN
Sbjct: 65  IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E  RD+         V     D+  LL PG++LN + +MY+V+TPF +   +   +  + 
Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L VPA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD
Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA+ GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+
Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM
Sbjct: 299 VAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q 
Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468
           ++FDP G+FIR +LPEL +   + +H P++                 YP  IVDH +A  
Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478

Query: 469 HTLNQYYAAKKQSLL 483
             L+     KK S L
Sbjct: 479 RALSVLGVLKKASAL 493


>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
 gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
          Length = 493

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%)

Query: 4   TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55
              M+       L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++ 
Sbjct: 5   KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAP 64

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            Q  FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EIN
Sbjct: 65  IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E  RD+         V     D+  LL PG++LN + +MY+V+TPF +   +   +  + 
Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L VPA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD
Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA+ GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+
Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM
Sbjct: 299 VAFPDLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q 
Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468
           ++FDP G+FIR +LPEL +   + +H P++                 YP  IVDH +A  
Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478

Query: 469 HTLNQYYAAKKQSLL 483
             L+     KK S L
Sbjct: 479 RALSVLGVLKKASAL 493


>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
 gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
          Length = 467

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 176/481 (36%), Positives = 248/481 (51%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  +I +F   PEQ+ +   S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++     Q      F + IE L     +     K+F+NR        RD+      
Sbjct: 57  QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +   A + YK++TP+ K   + + +  L+    P      
Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+   +F +       P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS
Sbjct: 172 SLFPNYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++E          G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD-FYNMIYVSFPKQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    + W+ G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
 gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
          Length = 474

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 145/485 (29%), Positives = 220/485 (45%), Gaps = 22/485 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VWLR+DLR+ DN AL  A       +  V+I   E      +      +++ SL+
Sbjct: 1   MPSTIVWLRDDLRLDDNPALADAAAMGH-PLTVVYILDEESPGVRPLGGAAKWWLHHSLV 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G      + S        +     +   T L +NR+Y   E   D  ++  
Sbjct: 60  SLAGGLEAAGSRLVLRRGSAAG----IIQELAAETGATHLRWNRRYGGPERSIDAGVKAW 115

Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQ----------ADLR 175
              + +  +   +  +  P ++   A   YKV+TPF +A +++                 
Sbjct: 116 AGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPA 175

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                    +  +    +          +   +  GE  A   L+ F    V  Y   RD
Sbjct: 176 GHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRD 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P ++GTS+LSP+L  G +SP + W+ L+E F        +    + +EL WREF   L+
Sbjct: 236 RPGVEGTSRLSPHLRFGEISPFRIWHALRERFPRQA---PADVGIFRSELGWREFCWQLL 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +        +            L+AW+QG TG+P++DA MRQL   GWMHNR+RM
Sbjct: 293 YENPELASRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 352

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK+LL DWR+GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP  Q 
Sbjct: 353 AAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQS 412

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           K+FD  G ++R ++PE+ N+  + IH P    +   L+  YP P+V   ++    L  Y 
Sbjct: 413 KKFDAAGRYLREFIPEIANLSEKEIHEPWKAPE---LAAGYPEPLVGLPESRERALETYQ 469

Query: 476 AAKKQ 480
             K  
Sbjct: 470 KLKDS 474


>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
 gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
 gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 138/495 (27%), Positives = 223/495 (45%), Gaps = 34/495 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL  
Sbjct: 3   ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ SL + G      +     D++  L         T++FYN  Y+   + RD  +++ L
Sbjct: 61  LELSLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGL 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R I     +  L   P  + +   Q + VY  F K  +    + +     +P  RLTG
Sbjct: 118 SQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPL--LPPRRLTG 175

Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR--- 234
           P+         +   +          +   +  G   A   L  F +  +  Y   R   
Sbjct: 176 PIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKA 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
           D  +   TS LSP+L  G LS R+ ++ +++       +     ++    +L  L +RE+
Sbjct: 236 DGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW H
Sbjct: 296 SRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI N
Sbjct: 355 NRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIEN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P ++G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+  
Sbjct: 415 PEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIG 474

Query: 465 KACHH---TLNQYYA 476
            A      +L + + 
Sbjct: 475 AARERLQASLAEMWE 489


>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 246/480 (51%), Gaps = 19/480 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+TDN AL  A       VIAV++  PE+  Q+   A    +++ SL  +  
Sbjct: 6   LVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALGP 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           +L+Q GI     +      ++  L +         +++NR YE + V RD+ +++ L+  
Sbjct: 65  ALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            + C+SF  ++L  P ++ N A + Y+ +TPF +A  +    A     P    R    V 
Sbjct: 121 GLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVE 180

Query: 190 PSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++      P    D      +  GE  AL  L  F  +++  Y + RD PA  GTS L
Sbjct: 181 GLDLAALGLLPRTPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGTSGL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L  G LSPRQ W ++       +  P+    ++L+EL WREF  HL+  +P +    
Sbjct: 241 SPALHFGELSPRQVWWQVMAAREAGV--PEDACETFLSELGWREFAHHLLWSHPDLGDAP 298

Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               +               AW+ G TG P++DA M +L   GWMHNR+RM+T SFLVK 
Sbjct: 299 VDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLVKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ GE +F   L+D D ASN  GWQW A  G D+ PYFRIFNP  QG+RFDPQG +
Sbjct: 359 LRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQGRY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R WLP L N+P +YIHAP +  +         L  +YP P++D +      L+ + A K
Sbjct: 419 VRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQALSAFQAIK 478


>gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
          Length = 493

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%)

Query: 4   TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55
              M+       L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++ 
Sbjct: 5   KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAP 64

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            Q  FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EIN
Sbjct: 65  IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E  RD+         V     D+  LL PG++LN + +MY+V+TPF +   +   +  + 
Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L VPA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD
Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA+ GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+
Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM
Sbjct: 299 VAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q 
Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468
           ++FDP G+FIR +LPEL +   + +H P++                 YP  IVDH +A  
Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478

Query: 469 HTLNQYYAAKKQSLL 483
             L+     KK S L
Sbjct: 479 RALSVLGVLKKASAL 493


>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
 gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
          Length = 433

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 160/472 (33%), Positives = 228/472 (48%), Gaps = 47/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
            + + W R DLR+ DN ALY A    +  V+ +FI   E        S  + +FI+  L 
Sbjct: 3   KISIFWFRRDLRLYDNTALYYAIQE-NIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLT 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L + G               E   S   +  +  +F NR YE   + RD+ ++  
Sbjct: 62  EINDQLKKIGSGVLIKH----GKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNI 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ + I    F D V+     IL    + YKV+TPF+   ++ L    +    +      
Sbjct: 118 LQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAEN 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  IP   +  F+  D   P          +++ +  +  Y ++RD PA  GTS+L
Sbjct: 178 FFQFEPEIPTLDEIGFRESDVPIP---------KKEYEESTIQKYDQERDFPAKNGTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G +S R+     ++              +WLNELIWR+FY  ++A +P V    
Sbjct: 229 GIHLRFGTISIREAVAHAQKLN-----------DTWLNELIWRDFYSMILANFPHVVK-N 276

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I W       Q W  G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K L
Sbjct: 277 AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKHL 336

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD +LASNNGGWQWAA TG D+ PYFRIFNP  Q  +FD    +I
Sbjct: 337 LIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAYI 396

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PE+N                   + +YP P+VDHKKA    L+ Y +A
Sbjct: 397 KKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429


>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
 gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
          Length = 470

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 230/475 (48%), Gaps = 13/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + + W R DLR+ DN+AL       +D +V+ VF+  P           +   +  ++  
Sbjct: 1   MRIHWHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVLE--HAGPARVVALLDAVAA 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++  ++G            D +  L +         + +NR+Y      RD  +   L
Sbjct: 59  LREAYRERGSDLVL----ASGDPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRASL 114

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I +      +   PG+I  +    Y+V+T F +        A +      ++    
Sbjct: 115 DDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPIAPPDADSLGDVT 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             TP       D   +    +  +    A   L  FC   +Y Y ++RD PA   TS+LS
Sbjct: 175 DDTPVPTWADLDV-EEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTSRLS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            +L  G +  R  +   +           ++    + ++L WREFY  ++ F PSV    
Sbjct: 234 HHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVVTEN 293

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F  +   IEW  D   LQAWK G TG+PI+DA MRQL T  +MHNR+RMI ASFL KDL
Sbjct: 294 -FKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLTKDL 352

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 353 LIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAAYI 412

Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL+ VP   IH+ H      +   + +YP PIVDH       L  +  A+
Sbjct: 413 REYVPELDGVPADVIHSWHELDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467


>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
          Length = 727

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 138/495 (27%), Positives = 222/495 (44%), Gaps = 34/495 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL  
Sbjct: 3   ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ SL + G      +     D +  L         T++FYN  Y+   + RD  +++ L
Sbjct: 61  LELSLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGL 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R I     +  L   P  + +   Q + VY  F K  +    + +     +P  RLTG
Sbjct: 118 SQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPL--LPPRRLTG 175

Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR--- 234
           P+         +   +          +   +  G   A   L  F +  +  Y   R   
Sbjct: 176 PIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKA 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
           D  +   TS LSP+L  G LS R+ ++ +++       +     ++    +L  L +RE+
Sbjct: 236 DGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW H
Sbjct: 296 SRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI N
Sbjct: 355 NRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIEN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P ++G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+  
Sbjct: 415 PEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIG 474

Query: 465 KACHH---TLNQYYA 476
            A      +L + + 
Sbjct: 475 AARERLQASLAEMWE 489


>gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
 gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
          Length = 488

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 165/486 (33%), Positives = 238/486 (48%), Gaps = 31/486 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68
            LVWLR DLR  D+ ALY A    + +V  VF+   +          R+  FI+AS+  +
Sbjct: 5   ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTRCDRRVEFIHASVCAL 63

Query: 69  QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            + L          G        +    +++ +        V ++  NR YE   + RD+
Sbjct: 64  DEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDYEPAALARDR 119

Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175
            +   L    I  S     +L   G +LN   Q Y V+TP+++  +Q L         + 
Sbjct: 120 RVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDAFQTKPYPVE 179

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                            +      P    D   P+G + A  +L+ F      Y +  RD
Sbjct: 180 RHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLPRMAAYKL-ARD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P  +G S LS +L  G +S RQ  +    +          GA +WL+EL WR+FY  ++
Sbjct: 239 FPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQG----CQGAQTWLSELAWRDFYFMIL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P V   + F P  ++++W+      QAW    TG+P++DAAMRQL   G+MHNRLRM
Sbjct: 295 WHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 354 VVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           ++FDP G FIR +LPEL  VP +++H P              L ++YPLP+VDH  A   
Sbjct: 414 QKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPVVDHASARER 473

Query: 470 TLNQYY 475
           TL +++
Sbjct: 474 TLMRFH 479


>gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
 gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
          Length = 513

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 154/498 (30%), Positives = 231/498 (46%), Gaps = 25/498 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            +++ +   LVWLR DLR+ DN AL+ A      ++I V+I   +   +         ++
Sbjct: 1   MSSSKIPCTLVWLRRDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGKRRTGQACLWWL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           Y SL  ++  LSQ  I           D+   L     +     +++NR YE  E  RD 
Sbjct: 59  YHSLKSLRNQLSQWNIPLIVKSGK---DAFTILKKLLDRYNADAIYWNRCYEPFEYNRDY 115

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +EKR   R I        +   P  + N   Q ++++  +    +           P  
Sbjct: 116 SIEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLPQPRKPYDKPKF 175

Query: 181 AIRLTGPVTPSNIPRFFDY---------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            +   G V                        +   +  GE+ A+  L++F K  +  Y 
Sbjct: 176 TVHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYS 235

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWR 288
           E+RD   +  TS LSPYL  G +SP   W+    ++      +  P      +L EL WR
Sbjct: 236 EKRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKRYLTELGWR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  HL+  YP +   K F     +++   D   L AW+ G TG+PI+DA MRQL+  G+
Sbjct: 296 EFTCHLLFHYPDLPE-KSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGF 354

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR+RMI ASFL+  LL+ W+ GEE+F ++L+D DLA +   WQW A  G D  PYFR+
Sbjct: 355 MPNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRM 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           FNP IQG++FD +G ++R W+PE+  +P  Y+  P              L   YP PIV+
Sbjct: 415 FNPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVE 474

Query: 463 HKKACHHTLNQYYAAKKQ 480
           HK A    L  Y   K++
Sbjct: 475 HKVARELALATYSQLKRK 492


>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 514

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 150/515 (29%), Positives = 217/515 (42%), Gaps = 52/515 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + L W R DLR+ DN  L AA     +       VF+  P+       S  +   +   L
Sbjct: 1   MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLD--HASDVRVRRLLDGL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++     +G      +          L          ++ +NR Y      RD  +  
Sbjct: 59  AALRDDYRDRGSDLLVAR----GAPETVLPELAAALDAERVVWNRDYSGLARERDAGVRT 114

Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I +      +L  P SI  +A   Y VY+ + K     +      +     +  
Sbjct: 115 ALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDLVD 174

Query: 185 TGPVTP----------------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
            G +T                                  +    + P G + A   L  F
Sbjct: 175 AGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRLDDF 234

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--------- 273
             E V+ Y  +RD PA + TS++S +L  G +  R+ +   K+       K         
Sbjct: 235 LSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDEGGD 294

Query: 274 --------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                   P +    +  +L WREFY  ++   P V     +  + E I W  D   + A
Sbjct: 295 HEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVTEN-YKEYEEGIAWRDDPDEIAA 353

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           WK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL DWR G +YF   L D D 
Sbjct: 354 WKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLADHDT 413

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+++GGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I+ ++PEL  +    IH  H 
Sbjct: 414 ANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHEWHE 473

Query: 446 WL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                + + + NYP PIVDH +     L  Y  A+
Sbjct: 474 LSPTQRANAAPNYPAPIVDHSERREEALAMYKRAR 508


>gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 487

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 166/486 (34%), Positives = 241/486 (49%), Gaps = 29/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S  LVWLR DLR  D+ ALY A      +V   F+       +      R+  FI+ASLL
Sbjct: 3   STALVWLRRDLRCDDHAALYHALRRYP-RVYCAFVFDTGILDELPSRQDRRVEFIHASLL 61

Query: 67  QVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           ++ + L Q        G             ++E +     +  V ++  NR YE   + R
Sbjct: 62  ELHQGLQQLAARSGAPGGGLIVRHGP----ALECIVQLAQELGVQEVLANRDYEPQAIAR 117

Query: 120 DKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL- 177
           D+ + + L    I  S     +L     +L    + Y V+TP+++A +Q L    L+   
Sbjct: 118 DQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPYP 177

Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                  +                +    +  +      +    L +    ++  Y E R
Sbjct: 178 VDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPLPSGMSGAQRLLQDFVPRMAAYQEAR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY  +
Sbjct: 238 DYPGRKGVSYLSVHLRFGTVSIR----QLAALAAKQAAEGCGGAQTWLSELAWRDFYFMI 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P V   + F P  ++++W++   L QAW +  TG+P++DAAM QL   G+MHNRLR
Sbjct: 294 LWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHNRLR 352

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ PYFRIFNP  Q
Sbjct: 353 MVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPITQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
            +RFDP GTFIR +LPEL  VP  +IH P +            L ++YP+P+VDH +A  
Sbjct: 413 SQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHARARQ 472

Query: 469 HTLNQY 474
            TL ++
Sbjct: 473 RTLMRF 478


>gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
 gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
          Length = 499

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 204/482 (42%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ N++   N   +  +  ++  
Sbjct: 59  NTELTKLGQSLTI----MLGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++       K    + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIAWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P         SL+YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 522

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 182/482 (37%), Gaps = 27/482 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLRI D+  L AA    +A +I ++I  PE W+Q   S R  HFI+  L  +  
Sbjct: 18  IVWFKRDLRINDHAPLLAASRT-NAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCDLDS 76

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G            DS + +    L   V+ ++ + +          +  ++L   
Sbjct: 77  GLAELGQHLVV----KVGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQKLCQN 132

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                       P   ++                + + ++         P          
Sbjct: 133 H----GIALHEAPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNALNSFPPCSSDTLPDK 188

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPY 248
           ++      +    I  +   G + A+  LR F   +   Y+     P       S+LS +
Sbjct: 189 ND----PIFGNVPIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAH 244

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMG 304
           L+ G LS R+    + +    L             ++ + L WR  +   +   P +   
Sbjct: 245 LAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH 304

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +        +    QAW  G TG+P +DA MR L   GW+  R+R +  SF    
Sbjct: 305 CMHPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQ 364

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+  E+      D +   +    Q    +G   +   R++NP  Q    DP+GTF
Sbjct: 365 LWLDWRVTGEHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTF 422

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +VP ++IH P  W           L  +YP P+VD   +      Q  A +
Sbjct: 423 IRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIR 482

Query: 479 KQ 480
           + 
Sbjct: 483 QN 484


>gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
 gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
          Length = 464

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 182/471 (38%), Positives = 272/471 (57%), Gaps = 10/471 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W R DLR+  N+AL  A +N     I  F    +QW QH  +  Q   +   + 
Sbjct: 1   MNT-LFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L++ GI     +   F D    L  +C Q  +  +  N++YE+NE  RDK ++ +
Sbjct: 58  YIREKLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQ 117

Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              + I  + ++  ++ P GS+     +MYKV+TPF++A ++         +  P     
Sbjct: 118 CDQQQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPL---- 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P +I              +P+ +     ++  F  +K+  Y + RDIP+++GTS L
Sbjct: 174 -SSNPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GV+S +Q    +++++ D+L   KS  F+W+NELIWREFY+HL+A +P +  G 
Sbjct: 233 SPYLALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGA 292

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + + W  +    + W +G TG+P++DAAM+QL   GWMHNRLRM+ ASFL K L
Sbjct: 293 NFNEKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHL 352

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE++FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FI
Sbjct: 353 LIDWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFI 412

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           R +LPEL  VP ++IH PH++L     S + Y   IVDHK A    L+ + 
Sbjct: 413 RKYLPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAFK 463


>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
 gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
          Length = 475

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 157/484 (32%), Positives = 238/484 (49%), Gaps = 22/484 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR+        A   +   VI +FI  P         A    +++ SL  
Sbjct: 4   SPAILWFRRDLRLD--ANPALAAAMARGPVIPLFILDP----ADRPGAASRWWLHGSLEA 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL++ G      +        E L +   +     +F+NR YE + + RDK L+  L
Sbjct: 58  LGESLARLGAPLILRR----GSPSEILPALTAETDARAIFWNRLYEPHLIGRDKALKSAL 113

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183
             + I     +  L   P  +   +   YKV+TPF ++L Q    A   +       +  
Sbjct: 114 TAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFPAPHPAPKKCAGLSPL 173

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +  +   ++          +   +  GE+ A   L  F  + +  Y E RDIPA +GTS
Sbjct: 174 PSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDIPAAEGTS 233

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP + W+ ++          ++G  ++L EL WR+F  HL+  +P +  
Sbjct: 234 RLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAG-RAFLRELAWRDFAHHLLFHWPDIAR 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                   +   W +D+    AW +G TG+PI+DA MRQL   GWMHNR+RMI ASFLVK
Sbjct: 293 ENW-KSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMIAASFLVK 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+VDWR G E+F + L+D DLA N   WQW A +G D+ PYFRIFNP +QG++FD  G 
Sbjct: 352 HLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGEKFDGDGA 411

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++R ++PEL  +  ++IH P +  D         L   YP P+VDH  A    L  Y   
Sbjct: 412 YVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARALAAYEQI 471

Query: 478 KKQS 481
           + +S
Sbjct: 472 RNES 475


>gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
 gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
          Length = 466

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 225/482 (46%), Gaps = 24/482 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + ++W R DLR++D+ AL AA    D +V+ VF+  P    +   +  ++  + AS+ 
Sbjct: 1   MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSR---AGARADRMAASIA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +       G            D    +          ++  +R+      RRD  +   
Sbjct: 57  ALS---GDIGGALVVRT----GDPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+              + PG +LN + + Y+V+TPF +A  ++      R          
Sbjct: 110 LEADGRRLVETGSPYAVGPGRVLNGSGRPYQVFTPFSRAWREHGWPEPGRRPRDDPWAAM 169

Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                P    +                  GE  AL   R F ++ + +Y +QRD P +  
Sbjct: 170 PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALARWRAFLEDDLEHYGQQRDRPDLDT 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L  G + PR     L             GA  ++ EL WREFY  ++   P  
Sbjct: 230 TSRLSAPLKYGEIHPRTILADLAAHPAADGE----GARRFVTELAWREFYADVLWHQPRS 285

Query: 302 CMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +         + + L++AW++G TGFP +DA MRQL   GWMHNR+RM+TAS
Sbjct: 286 AWRDLRDALSGMPYDRGPEVNDLVEAWRRGRTGFPFVDAGMRQLVAQGWMHNRVRMVTAS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDL V W +G  +F+  LLDGDLASNN GWQW A TG D+ P+FR+FNP  QG+RFD
Sbjct: 346 FLVKDLHVWWPVGARHFLDHLLDGDLASNNHGWQWVAGTGTDASPFFRVFNPVTQGQRFD 405

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G +IR W+PEL ++P    H P  W D +D    YP  IVDH +     L +Y   + 
Sbjct: 406 PDGDYIRRWVPELRHLPGAAAHEPWLWPDGHDHG--YPERIVDHAEERLEALRRYDVVRN 463

Query: 480 QS 481
            S
Sbjct: 464 GS 465


>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 528

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 190/485 (39%), Gaps = 27/485 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VW + DLRI D+  L AA   S   ++ +++  P+ W++   S R  HFI+  L  
Sbjct: 23  TINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIHDCLTD 81

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  ++S  G            D    +++      V  ++ + +       +  +  +++
Sbjct: 82  LNTAVSSLGQPLVI----KVGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRDINVRKI 137

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  +       P   ++              K +++ + +      P+        
Sbjct: 138 CE----LNNIPIHEYPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQRYISDKL 193

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQL 245
               +      +  + +  +   G   A+  LR F   +   Y+     P +     S+L
Sbjct: 194 PPKDD----PMFGEEFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSAVYCSRL 249

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S +L+ G LS R+    +K+    L      +      ++ + L WR  +   +   PS+
Sbjct: 250 SAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKIEDQPSI 309

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +    E + +    QAW  G+TG+P IDA MR L   GW+  R+R +  SF 
Sbjct: 310 ETHCMHPAFEGLRENDHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMRAMLVSFA 369

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q    DP 
Sbjct: 370 SYQLWLDWRVIGDHLARLFTDFEPGIHYS--QLQMQSGVTGINAMRVYNPVKQSIEHDPN 427

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G +IR W+PEL ++P ++IH P +W           L   Y  PIVD+  A      +  
Sbjct: 428 GDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAAKDAKEKLA 487

Query: 476 AAKKQ 480
             +K 
Sbjct: 488 EIQKS 492


>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 457

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 224/475 (47%), Gaps = 24/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G               + + +   +    ++           RR++LL   
Sbjct: 60  DLDASLRERGGRLVVRSGP----VAQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTV 115

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+ R   +        ++ PG++       Y V+TP+ +   Q  ++   R+     +  
Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPV-- 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTS 243
             PVT    P         I P  P G ++A        +       + Q D  A   TS
Sbjct: 174 --PVTMHGEPLPSRDAVPRISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLAGDMTS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP +          +      +GA +++ +L WR+F+  +MA  P+  +
Sbjct: 232 RLSPYLHFGALSPLELVR-------EASAHGGTGAEAFVRQLCWRDFHHQVMAARPASSV 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                        +  +  + AWK+G TGFP++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  YF+ +L+DGD+ +N   WQW A TG D+ P+ R+ NP +QGKRFDP+G 
Sbjct: 345 TLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKRFDPRGE 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +P   +H P          L+YP P++D  +     L ++  A+
Sbjct: 404 YVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLIDLAEG----LARFKHAR 454


>gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 519

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 166/480 (34%), Gaps = 23/480 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +H+VW + DLR+ D++ L  A       V+ +++  P+ W Q  +SAR   F+   L  
Sbjct: 4   PIHIVWFKKDLRVFDHEPLKRASLQ--GPVLPLYVIEPDLWDQPDMSARHYAFLSECLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS+ G               + L     + R+  L+ + +       +        
Sbjct: 62  LDQELSRLGKPLLLRT----GSVTDVLTYISERYRIAGLWSHEETGNGWTYQRDKAVAAW 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +         + +      +      +  I       L  L    +     
Sbjct: 118 CRANSVPWTECRQTGVIRRLNSRNGWAGQWDRFMAEQPIDPPALRPLSGLTSGPLPKAAD 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +  +  P         +  +  +                         + A +  S++SP
Sbjct: 178 LGLAADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATP-------VKAFEACSRMSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC----- 302
           YL+ G +S R+          +L      G  +W   +       H    +         
Sbjct: 231 YLTFGTISMREVAQATWARQAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQKLEDEPR 290

Query: 303 --MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    +        D+  LQAW++G TG P +DA MR L   GWM+ R+R +  + 
Sbjct: 291 LEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRMRAMLTAV 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +DWR    +      D +   +    Q    +G   +   RI+NP  QGK  DP
Sbjct: 351 ASYHLWLDWRQPGLHLARLFTDYEPGIHWSQIQ--MQSGTTGINTIRIYNPVKQGKDQDP 408

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            G F++ W+PEL ++    I+ P         L   YP P+VD+  A     ++ +A +K
Sbjct: 409 DGIFVKRWVPELKDIDPALINEPWKAENAGKVLGKTYPFPVVDYLSAAKEARDKVWAVRK 468


>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
 gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
          Length = 479

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 203/472 (43%), Positives = 269/472 (56%), Gaps = 11/472 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R+DLR  DN AL AA  N      A+FI +  QW++H  +  Q   I   L++++  
Sbjct: 10  VWFRHDLRTIDNPALQAAVDN-QQPTFALFIYSESQWKKHNKAPIQIDLIKRRLVELKNE 68

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q  I         F +    + +   +  V  LF N++YE +E  RD  + + L +  
Sbjct: 69  LEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESLLNTN 128

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT-- 189
            C  FD   +LP G+I+N   Q YKV+TPF+KA   +  Q            L  P    
Sbjct: 129 -CYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTGKSVLCDPKLIK 187

Query: 190 --PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               N    F +        +P+  +  + ILR+FC++KV  Y   RD P IQGTSQLSP
Sbjct: 188 KLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSP 247

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG +S +QC        ++   +   G   WL+ELIWREFY HL+ FYP++   + F
Sbjct: 248 YLAIGAISAKQC---ALRLHLEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAF 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           + + + IEW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +
Sbjct: 305 LSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHI 364

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+FD   TFI+H
Sbjct: 365 DWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKH 424

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPEL  +  + IH P+        S NYP  IVDH +     +  Y  AK+
Sbjct: 425 WLPELKALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 474


>gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3]
          Length = 470

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 182/474 (38%), Positives = 266/474 (56%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+    DLR+ DN AL  A  + ++   AV I + EQW+ H  S  +  F    L  V
Sbjct: 1   MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L Q  I         ++D    L ++  + +VT +  N +  +NE+ RD  ++  L+
Sbjct: 59  ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  + + D  + P GSI N   Q Y+V   +++A  + L  + L+ L VP ++    
Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178

Query: 188 VTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   +          YP   +   +P+GE  AL +L KF  E +  Y +QRD P I  TS
Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL++G++S RQC   +             G  +WL+EL+WREFY+H++  +P +  
Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   T  + W      L AWK G TG PI+DA +RQ+   GWMHNR+RMI A FL K
Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FD QG 
Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL ++  + IH P++     +L LNYP PIVD K +    L  + +A
Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA--KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470


>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
           borinquense DSM 11551]
 gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
           borinquense DSM 11551]
          Length = 469

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 231/475 (48%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W R DLR++DN  L  A    D  V+ VF+   +        A +  F+  +L ++
Sbjct: 1   MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLA--HAGAARVRFMLDALARL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++       +     D  E L     +     + +N+ Y      RD+ + + L 
Sbjct: 57  RETYRERDSDLVVVR----GDPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112

Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +        +   PGSI  +A   Y VYT F K                P       
Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKWRNRNKADPFS---PPEADSLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V+ +++P   +  F   D      G + A   L  FC++ +Y Y   RD P    TS+LS
Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R+ +   +E   +            + ++L WREFY H++ F P V    
Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVTQN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I W +D   L AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDL
Sbjct: 290 -YKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G  +F + L D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP  T+I
Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408

Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL +     IH   +    ++  ++  YP PIV+H K     ++ + AA+
Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463


>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 483

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 186/481 (38%), Positives = 275/481 (57%), Gaps = 9/481 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN     A   +    +AV++ +PEQWR H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNT--ALAAAAAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L++  I       +++  + + L   C +  V  +  N +Y +NE RRD  + + L 
Sbjct: 59  SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +   S  D +L  PGS+L      ++V++ FRK     L  +    +  PA +    
Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P     F  P +A+  ++P GE  A   L  F  + +  Y  +RD PA  GTSQ
Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +   +          +GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W K    L+AWKQ  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA--AKKQSL 482
           I+ WLPELN++  Q +H+P++       +++YP PIVD +++    L  +    A++ + 
Sbjct: 419 IKRWLPELNDLDKQQVHSPNTQGGLFG-AVDYPAPIVDLRQSRARALAAFRNLPARQDAT 477

Query: 483 L 483
           +
Sbjct: 478 V 478


>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 471

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 220/482 (45%), Gaps = 27/482 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P              +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDP----AAETGGASRWWLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFAARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I       +++  P  I      +Y VYTPF +A             P       
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAG 170

Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P    +    +          +   +  GE  A   L  F  +    Y  QRD+P + G
Sbjct: 171 DPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGVAG 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L  G ++    W            +       +L ELIWREF  +L+   P +
Sbjct: 231 TSGLSPHLHWGEIAIDAVWRAAVAAPGRDAARQT-----FLKELIWREFAAYLLWHTPDL 285

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P       + W + +  L AW+ G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 286 AT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG++FDP 
Sbjct: 345 VKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R ++PE+ N+P +Y+HAP    +         L  +YP PIVD  +     L  + 
Sbjct: 405 GAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERALAAFA 464

Query: 476 AA 477
           A 
Sbjct: 465 AI 466


>gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
 gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
          Length = 463

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 152/479 (31%), Positives = 224/479 (46%), Gaps = 27/479 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +     M   ++W R DLR+ DN AL AA       V+ + +     W   G   R + F
Sbjct: 11  LDRMRIMGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLWG-PGAGVRTACF 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
                 ++     ++             D +  +           +     +     RRD
Sbjct: 70  -----ARLLAEFDERIGGLHVVH----GDPVAEVVRVARAVDAGTVHVAAAHTPYGARRD 120

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +E+ L    +       +  + PG +       Y+VYTPF +A   +  +A       
Sbjct: 121 AAVERALADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWRAP-----A 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           PA+R    + P                  P   + A     +  KE+V  Y + RD+P +
Sbjct: 176 PAVRSVPWLRPGGRTHRIPEVAVPEGVTLPPLGEEAARRRWRDWKEQVTQYDDVRDLPGV 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS++S +L  G + PR           DL      G  S++ E+ +REFY  ++   P
Sbjct: 236 DRTSRMSVHLKWGTIHPRTLLA-------DLDGHDSDGVRSYVREIAFREFYADVLHHRP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G  + P   ++E+++    L AW+ G TG+PI+DA MRQL   GWMHNR+RMI AS
Sbjct: 289 DSAHG-YYNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVAS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDL V+W  G  +FM +L DGDLASN  GWQW A  G D+ PY+R+FNPT QGK+FD
Sbjct: 348 FLVKDLHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P GT++R W+PEL +VP +++H P +     D    YP PIVDH +     L +Y A +
Sbjct: 408 PDGTYVRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463


>gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
          Length = 467

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 175/481 (36%), Positives = 247/481 (51%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY A    D  +I +F   PEQ+ +   S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++     Q      F + IE L     +     K+F+NR        RD+  +   
Sbjct: 57  QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I         L     +   A + YK++TP+ K   + + +  L+    P      
Sbjct: 112 ADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS
Sbjct: 172 SLFPKYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++E          G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD-FYNMIYVSFPKQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    + W++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 528

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 103/470 (21%), Positives = 171/470 (36%), Gaps = 17/470 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W + DLR+ D+ AL  A       +I ++I  PE W +   S RQ  FI   L  ++ 
Sbjct: 38  ILWFKRDLRVQDHPALSHAARL--GPIIPLYIVEPEAWAEPDASERQYAFICECLESLRS 95

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G+           D++  L++    Q V  L  + +                   
Sbjct: 96  DLAALGLSLVLR----VGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVA----- 146

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +         P S +   L     +   R  +++  V   ++     A+      +P
Sbjct: 147 EWARGQGVRWHEMPQSGVVRRLSSRDAWQGARDRVMRAPVLGAVQGARGAAVASDDLPSP 206

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             +      P +        G            + + Y       +   +  S++SP+L+
Sbjct: 207 EALGLMEACPLRQKGGR---GAGVRALTSFVSTRGESYQRAMSSPLHGARACSRISPHLA 263

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LS R+                     S+   L WR+ +   +   P +        +
Sbjct: 264 FGTLSLREAVQAGAAAPTGRGPDWARSMRSFQARLAWRDHFMQKLEDEPEIERRCLHPAY 323

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                   D+  L AW +G TG P +DA MR L   GW++ R+R +  +     L +DWR
Sbjct: 324 EGLRPRVADAVRLAAWSKGETGLPFVDACMRSLRATGWLNFRMRSMLMAVASYHLWLDWR 383

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
                      D +   +    Q    +G   +   RI+NP  QG   DP G F R WLP
Sbjct: 384 STGPVLARAFTDYEPGIHWP--QVQMQSGTTGMNTIRIYNPVKQGLDQDPSGEFTRRWLP 441

Query: 431 ELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           EL +VP  Y+  P +W +    L   YP PIVD  +A        +A ++
Sbjct: 442 ELAHVPDAYLQRPWAWSEAEALLGRGYPAPIVDPVEAARVAREAVWACRR 491


>gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 507

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 107/480 (22%), Positives = 176/480 (36%), Gaps = 33/480 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW + DLR  DN+ L  AC +    V+ ++I  PE WRQ   SARQ  F   SL  ++
Sbjct: 9   QLVWFKRDLRTVDNRPLLEACAH--GPVLPLYIVEPEYWRQPDASARQWEFCRESLEHLR 66

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  G            +++  L+       +  ++ + +                  
Sbjct: 67  RELAALGQPLVVR----CGEAVTVLERARRSLGIAAIWSHEETGNGFTYDRDRAVLAWTR 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                            +        +          + + +      P         + 
Sbjct: 123 DRGIPWIQIPQFGVTRGLKRREGWARR--------WEERMAEPLAPEPPKLLPLSDLALG 174

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSP 247
                                G ++ L  L  F   +V  Y      P +     S+LSP
Sbjct: 175 EIPTAEALQLSPDPCPLRQRGGRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRLSP 234

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ G LS R+                  G  S+ + L W   +   +   P++     F
Sbjct: 235 YLTWGCLSMREVVQ-------ASRTLTGRGVSSFGSRLHWHCHFIQKLESEPAIEFHD-F 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P+   I         QAWK+G TG P +DA MR L   GW++ R+R +  SF    L +
Sbjct: 287 HPFMRGIRPMDS-ERFQAWKEGRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHLWL 345

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR    +   Q +D +   +    Q    +G+ ++   RI+NP  QG+  DP G FIR 
Sbjct: 346 PWRESGLHLARQFVDYEPGIHWS--QCQMQSGSTAINTIRIYNPVKQGQDHDPNGRFIRE 403

Query: 428 WLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W PEL ++P  Y+H P     +        L ++YP P+VD   A     ++ +  ++ +
Sbjct: 404 WCPELASLPNVYLHEPWKLDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRRAA 463


>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
          Length = 475

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 168/476 (35%), Positives = 247/476 (51%), Gaps = 17/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S +K++ +F   P     + ++  +  ++   L ++++
Sbjct: 6   LFWHRRDLRISDNMGLAAARKQS-SKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S S+ G      +     + IE +    +  +VT +F+++  E     RD  +E+ L  +
Sbjct: 65  SYSKIGSQLLIVR----GEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183
            I  +     L  PP  IL  + + Y VYTPF K   Q            ++ L    I+
Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180

Query: 184 LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +       ++P   D  +    + +   GE  A   L +F +  +  Y EQR+ PA++GT
Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  GV+  R  W    E   +   +       +W  EL WREFY+H +  +P  
Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQ- 299

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P+    +   W+ +    QAW +G TG+P++DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 300 LTVEPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D  P  RIFNP  Q K+FDP+
Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           G +IR WLPEL+++ T+Y+       D      +YP PIVDH         +Y   
Sbjct: 419 GEYIRQWLPELSSIDTEYLVR-GKIPDDERERCDYPQPIVDHNLRQREFKRRYKEL 473


>gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 593

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 167/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+AL  A   +   +  ++ ++I +P+    H  S  +  F   +L  
Sbjct: 100 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L
Sbjct: 160 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q    +L V       
Sbjct: 220 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 279

Query: 187 PVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             +  +                        Q  + M+P GEQ A   L +F   +V  Y 
Sbjct: 280 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 339

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           ++R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY
Sbjct: 340 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 399

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HN
Sbjct: 400 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 459

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 460 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 519

Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469
            +Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +   
Sbjct: 520 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 579

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 580 ALKRYKE 586


>gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
          Length = 499

 Score =  299 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 200/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    Q  +  ++ +++   N   +  +  ++  
Sbjct: 59  NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++ H     K    + K + + +V+A  +   +   +   P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ G +S R+ +    +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G F R WLPEL NV  + IH P          ++YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFTRRWLPELENVSNENIHTPWLEKHNA---IDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 699

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 218/488 (44%), Gaps = 24/488 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VWLR DLR+ DN AL AA    +  V+ VFI +PE+ RQ         ++  SL+Q
Sbjct: 4   PCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSLIQ 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL   G+     + +   D++  L         T++FYN  Y+   + RD  +++ L
Sbjct: 62  LDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQGL 118

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     +  L   P  +LN   + +  +  + +  +    + D   LP   +    
Sbjct: 119 TQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTSIA 178

Query: 187 PVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              P+  P       +        +   +  G  NA   L  F    +  Y   R     
Sbjct: 179 GSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKIDG 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSP++  G +S R+ ++ ++        D     +   + ++  + +RE+ R+L 
Sbjct: 239 PTTSLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRYLS 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW+HNR+R+
Sbjct: 299 FNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRV 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+ NP  +G
Sbjct: 358 IVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQTEG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
            + DP G ++R WLPEL  +PT++IH P             +L  NYP PIV+   A   
Sbjct: 418 YKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAARER 477

Query: 470 TLNQYYAA 477
                   
Sbjct: 478 LRQAVAQM 485


>gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
 gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
          Length = 488

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 165/486 (33%), Positives = 238/486 (48%), Gaps = 31/486 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68
            LVWLR DLR  D+ ALY A    + +V  VF+   +          R+  FI+AS+  +
Sbjct: 5   ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVEFIHASVCAL 63

Query: 69  QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            + L          G        +    +++ +        V ++  NR YE   + RD+
Sbjct: 64  DEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDYEPAALARDR 119

Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175
            +   L    I  S     +L   G +LN   Q Y V+TP+++  +Q L         + 
Sbjct: 120 RVADGLAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDAFQTKPYPVE 179

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                            +           D   P+G + A  +L+ F      Y +  RD
Sbjct: 180 RHAHHLAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPHMAAYKL-ARD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P  +G S LS +L  G +S RQ  +    +          GA +WL+EL WR+FY  ++
Sbjct: 239 FPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQG----CEGAQTWLSELAWRDFYFMIL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P V   + F P  ++++W+      QAW    TG+P++DAAMRQL   G+MHNRLRM
Sbjct: 295 WHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 354 VVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           ++FDP G FIR +LPEL  VP +++H P S            L ++YPLP+VDH  A   
Sbjct: 414 QKFDPDGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPVVDHASARER 473

Query: 470 TLNQYY 475
           TL +++
Sbjct: 474 TLMRFH 479


>gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549]
          Length = 499

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/482 (23%), Positives = 205/482 (42%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   N   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++       K    + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV ++ IH P         SL+YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSSENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 508

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 147/490 (30%), Positives = 232/490 (47%), Gaps = 24/490 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWLR+DLR+ DN AL+AA    +  ++ +++   E      +      +++ SL ++ 
Sbjct: 24  SIVWLRDDLRVADNPALHAAVERGE-PIVVLYVLDEESDGIRPLGGAARWWLHMSLSRLA 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL + G      +      + + +D    +     + +NR+Y   E+  D  ++K L  
Sbjct: 83  ESLRELGSDLVLRR----GKAADVVDDLVREIGAGAVLWNRRYGGAEIAVDTAIKKDLGD 138

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIR 183
           R +        L + P ++ N   + ++VYTPF KA  +       + A           
Sbjct: 139 RGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREEPRKPLPAPKELDAPREAP 198

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +  +    +          +      GE   L  L  F   ++  Y  QRD PA   TS
Sbjct: 199 RSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTS 258

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL  G +SP Q W+R++      +   +  A  +L+EL WREF  HL+   P +  
Sbjct: 259 RLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPDLAT 318

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +            L AW++G TG P++DA MR L   G +HNR+RM+ ASFL+K
Sbjct: 319 RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASFLIK 378

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP +QG++FDP G 
Sbjct: 379 NLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDPSGE 438

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLPIVDHKKACHHT 470
           +IR ++PEL + P   +H P   +     S               YP PIVD K++    
Sbjct: 439 YIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAYPAPIVDLKESRQRA 498

Query: 471 LNQYYAAKKQ 480
           L  Y   K +
Sbjct: 499 LAAYDEIKDR 508


>gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 468

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 189/469 (40%), Positives = 263/469 (56%), Gaps = 7/469 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R+DLRI DN A+++AC + D   +A+F    E W+ H  +  +  FI+ +L  +Q+ 
Sbjct: 5   IWFRSDLRILDNPAVFSAC-HGDEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L++KGI  Q      F      L S+C + ++ ++  N +Y ++E RRD      L +  
Sbjct: 64  LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123

Query: 132 IC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           I   S   ++L+ PG +       YK +TPF +   Q L +          +++      
Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEK----TYSEPLQIKSYSRV 179

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +          +     +  GEQ  L  L +F    V  Y + RD+PA  GTSQLS YL+
Sbjct: 180 TAKGLPECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYLA 239

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            GV+ P+     L +   +      SGA +WL EL WREFY+HLM F P +  G+ F   
Sbjct: 240 QGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQSE 299

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T+ I+W +D    Q W  G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDWR
Sbjct: 300 TDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDWR 359

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +FM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR W+ 
Sbjct: 360 KGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWVE 419

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           EL  VPT+YIH PHSWL +   S NY  P+V+HK A    L  +   K 
Sbjct: 420 ELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVKN 467


>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 479

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/482 (33%), Positives = 242/482 (50%), Gaps = 19/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+D+K L AA     ++V+ VF   P    Q  ++  +  ++   L ++QK
Sbjct: 6   LFWHRRDLRISDHKGL-AAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q          +           +++N   E     RD+ + + L+  
Sbjct: 65  QYEKVGSQLLILQ----GQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120

Query: 131 VICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I            P       A + YKVYTP+     +   Q  + +       LT   
Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180

Query: 189 TPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                   + +   GE+ A + L +FC   ++ Y EQR+ PA  
Sbjct: 181 LKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFPAND 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYP 299
           GTSQLS  L  GV+S R  W +  E   +      ++   +W  EL WREFY+  M  +P
Sbjct: 241 GTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMYHFP 300

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +  G P+    +   W+++    QAW +G TG+PI+DAAMRQLN IGWMHNR RMI A+
Sbjct: 301 ELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVAN 359

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNPT Q +++D
Sbjct: 360 FLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQKYD 418

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G +IR WLPEL+++ T+Y+        K+  + +YP PIVDHK+      + Y   K+
Sbjct: 419 PEGEYIRQWLPELSSLDTEYLVT-GKISSKDREACDYPEPIVDHKQQQQQFKSLYKEQKE 477

Query: 480 QS 481
            S
Sbjct: 478 AS 479


>gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
           F2-208]
          Length = 467

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F + S+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FTSVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR        RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
 gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
          Length = 554

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 149/461 (32%), Positives = 219/461 (47%), Gaps = 10/461 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++  P++       A    +++ SL 
Sbjct: 79  MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSLT 137

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L Q+G      +     D    +           +++ R+YE   +  D  L+  
Sbjct: 138 SLDRALRQQGAQLHVME----GDPTIAVPMLARAVGAQAVYWTRRYEPTAIACDTALKTT 193

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I   S   ++   P ++   A Q Y+V+TPF + L  +L          P   LT
Sbjct: 194 LRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWLT 253

Query: 186 GPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +          P +    +   +  GE  A   L +F  E +  Y + RD PA  GT
Sbjct: 254 ADGSIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMGT 313

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +L  G ++P Q    L+E         +     +L EL WREF  HL+  +P   
Sbjct: 314 SRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHHLLYHFPHTT 373

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +        D   L  W+QG TG P++DA MRQL   GWMHNR+RM  ASFL 
Sbjct: 374 DANFDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVASFLT 433

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  RFDP  
Sbjct: 434 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFDPDA 493

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            +++ WLPEL+ +P   +H P        +   YP P++D 
Sbjct: 494 AYLKRWLPELSGLPADVLHRPWKHPAALAV-CGYPAPMIDL 533


>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 505

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 152/492 (30%), Positives = 231/492 (46%), Gaps = 31/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+D R+ DN AL  A   S   V+ V++  P    +  +   Q  +++ SL ++  
Sbjct: 14  VVWFRDDQRLGDNPALCHAV-ASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKLDD 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +LS  G      +     D  E +  + +     K+ +NR+Y       D  +++ L  R
Sbjct: 73  ALSALGGSLIVLR----GDEHEAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLVGR 128

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  S  +  L   P ++L      Y+V++ + +A  ++ +           I       
Sbjct: 129 GIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPVPH 188

Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                                   +   +  GE+ A   L  F +  +  Y + RD+PA 
Sbjct: 189 NVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADMRDLPAA 248

Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             TS+LSPYL  G +S RQ W           +    DL          +L+E+ WREF 
Sbjct: 249 HATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWREFS 308

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            HL+  +P       F    + + W  D + L+ W+ G+TG+P++DA MR+L   GWMHN
Sbjct: 309 YHLLYHFP-PLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWMHN 367

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW + +G D+ PYFRIFNP
Sbjct: 368 RVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNP 427

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
            +QG++FDPQG + RHW+PEL+ +  + IHAP +   +        L   YP PIVDH+ 
Sbjct: 428 VLQGQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDHQA 487

Query: 466 ACHHTLNQYYAA 477
           A    L      
Sbjct: 488 ARTRALESVKRV 499


>gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 499

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/482 (23%), Positives = 204/482 (42%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   +   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++       K    + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICESQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + D            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +    
Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQR 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV ++ IH P         SL+YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSSENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 499

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 203/482 (42%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   +   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++            + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYL--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P         SL+YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 474

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/479 (34%), Positives = 239/479 (49%), Gaps = 24/479 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            + +VW RNDLR+ D+ A+  A     + D K++ VF    + +        +  + + +
Sbjct: 4   PLTVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSHLHT---RHDYFFQT 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L      L  + I  ++     + +  E   S   +    +  +  +   +         
Sbjct: 61  LRHFSDDLKSRNIAIRFL----YGEVTEAFASLLKEYSGVQAVFASKDYTSFATERDRTV 116

Query: 125 KRLQHRVICKSF--DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           + L      +      + L  P SI+      YKVYTP+ K  ++  V+  L +     +
Sbjct: 117 RTLFEERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRG-LLAGHEKKL 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           R        N  +  D+   +      +GE +A   L +F  +++ +Y E RD PA+ GT
Sbjct: 176 RERTCEVAMNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  GVLS  Q ++     F        +    ++ EL WR+FY  +   +    
Sbjct: 236 SRLSPYLKTGVLSVAQVYHAAYPLFEKGDDAAVT----FIKELAWRDFYTMIHYHF-ENL 290

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F      + WN+D  LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL 
Sbjct: 291 RNQEFQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLT 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KD  +DWR GE YF  +L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q KRFDP+G
Sbjct: 351 KDYRIDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEG 410

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           TFIR ++PEL +VP   IH P    +         +  +YPLP VDH +A    +  + 
Sbjct: 411 TFIRQYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFE 469


>gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
 gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
          Length = 459

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 181/476 (38%), Positives = 253/476 (53%), Gaps = 20/476 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSH 59
           M+      ++LVW RNDLR+ DN AL+ A       VI ++   P EQ   H  +  +  
Sbjct: 1   MRKN----INLVWFRNDLRVGDNPALFYAAEQ--GAVIGIY-LEPVEQREAHDDAPCKIG 53

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FIY S+ +++K L++  I     +  ++  S+E +     Q     +++N +Y  NE  R
Sbjct: 54  FIYDSVNELRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNR 113

Query: 120 DKL-LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D    +  L      K FD  V++PP S+     + YKV+TP++K+     ++       
Sbjct: 114 DDELEKVLLGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSW----IEFHKTQGI 169

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            P    +           +D+       ++P GE  A   L+     K  YY E RDIPA
Sbjct: 170 SPLPIPSKQDFKIEKQHDYDFGHDYRKDLWPAGELAAQDRLK-EFLPKAGYYKEHRDIPA 228

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTS LSPYL++G +S +QC   L E       +      +WL+E+IWREFYR ++   
Sbjct: 229 VKGTSMLSPYLTVGAISAKQCIESLLE--WYEGDQEAFYLDTWLSEIIWREFYRQIIIDN 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +    PF    +++ WN    L + W Q  TGFP+IDAAMRQL   GWMHNRLRM  A
Sbjct: 287 PQISYHLPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K  L+DWR GE +FM  L+DGD ASNNGGWQW +STG D  PYFRI +P  Q +RF
Sbjct: 346 MFLNKLCLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           DPQG FIR  +PEL ++  + IH P S   K    L YP PI+D+K+A    L   
Sbjct: 406 DPQGKFIRKLVPELASLNNKDIHFPTSQQRKE---LGYPEPIIDYKEARKAALALL 458


>gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
          Length = 427

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 226/430 (52%), Positives = 298/430 (69%), Gaps = 4/430 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D   FP+ E   +  LR+FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFY
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHLM +YP++C  +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHN
Sbjct: 238 RHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHN 297

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP
Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL
Sbjct: 358 TTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417

Query: 472 NQYYAAKKQS 481
           + Y AA+K +
Sbjct: 418 SAYEAARKGA 427


>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisB18]
 gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB18]
          Length = 483

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 207/473 (43%), Gaps = 18/473 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A     + LVW R+DLR++D+ AL  A   S A V+ +++   E      +      ++
Sbjct: 1   MANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L+ +G V    +      +   +     +    ++ +N            
Sbjct: 60  AQSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVAD 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L  RL    +        LL   + +                 +  L           A
Sbjct: 116 DLAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLALGDPPQPLTAPKA 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +     +    +  +   P +          +  GE  A   L+ F    +  Y  +RD 
Sbjct: 176 LCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIAGYATERDR 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS LSP+L  G +SPRQ W+              +    +L+EL WREF RHL+ 
Sbjct: 236 PDRVATSTLSPHLRFGEISPRQVWH-AARFAAAERPAIAADVDKFLSELGWREFCRHLLF 294

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +       P  ++  W  D   L+AW++G TG+P++DA MR+L   G MHNR+RM+
Sbjct: 295 DNPDLATRN-LQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRVRMV 353

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFR+FNP +QG+
Sbjct: 354 AASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPILQGE 413

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           RFD +G ++R ++PE+  +  + IH P +            L   YP PIVDH
Sbjct: 414 RFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVDH 466


>gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 474

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 162/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    +Q  Q   S  QS  + AS+L  
Sbjct: 2   VSVMWFRRDLRIEDQKALARAI-ASQSPTLCVFQFNQKQLSQPP-SRNQSA-VVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L ++GI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKERGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + I         L     I N + + YKV+TP+ +       +  +         L+ 
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               + +           + +  +  + A   L  F   ++  Y   RD P+  GTS LS
Sbjct: 175 KTPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G++S R  +  + +           G   +L EL WR+ + H++           
Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL KDL 
Sbjct: 286 IQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTKDLQ 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G FIR
Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGDFIR 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L +VP +Y++ P    +         +  +YP P+VDH +     + +Y  AK++
Sbjct: 406 SYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465

Query: 481 S 481
           +
Sbjct: 466 A 466


>gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 499

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 201/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    Q  +  ++ +++   N   +  +  ++  
Sbjct: 59  NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++ H     K    + K + + +V+A  +   +   +   P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ G +S R+ +    +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSIYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FI+ W+PEL NV  + IH P          ++YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIKRWIPELENVSNENIHTPWLEKHNA---VDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 DS 462


>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 679

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 142/497 (28%), Positives = 231/497 (46%), Gaps = 27/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T ++  +VW R DLRI DN AL AA       V+ VFI +PE+  Q         +
Sbjct: 1   MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRA--GPVLPVFIWSPEEEGQFLPGRVSRWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ + +SL+  G      + S   + +  L         T++FYN  Y+   + RD
Sbjct: 59  LKQSLVHLNESLTILGAPLVMRRAS---NVLAALLEIKKATGATQVFYNHLYDPVSLVRD 115

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ L    I  +  ++ L   P  + +   Q +  ++ F    +    + + + LP 
Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175

Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             I +  GP    +I                +   +  G  NA   L  F    +  Y  
Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWR 288
            R       TS LSP+L  G +S R+ ++ ++ +      +  ++ +     +L  + +R
Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW
Sbjct: 296 EYSRYLSFNFP-FTHERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGW 354

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HN++R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI
Sbjct: 355 LHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRI 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
            NP I+G +FDP G ++R WLPEL+ +PT++IH P             +L  NYP PIV+
Sbjct: 415 DNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVE 474

Query: 463 HKKACHH---TLNQYYA 476
              A       L + +A
Sbjct: 475 IAAARERLEQALAEMWA 491


>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 484

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 213/479 (44%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            +S + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I     +  L   P  +       YKV+TPF +  +  L        P     L 
Sbjct: 128 LRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLP 187

Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +      +          Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 ASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  N L+               +++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIANTLETHRTARNGAEI---DAYIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
             +I  W+PEL  +  +   AP         L+  YP  PI+   +     L  Y   +
Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRTPIIGLAEGRDAALAAYAKTR 483


>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
 gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
          Length = 475

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 174/477 (36%), Positives = 251/477 (52%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S   V+ +F   P+   +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSTARQRSP-HVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  Q G      +        + +       +   +F+N   E     RD+ +   LQ +
Sbjct: 65  NYQQAGSQLLILK----GKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183
            I  + F D +L  PG IL  + + YKVYTPF +   Q L ++ +++L          I 
Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQIS 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L       ++P   D  +   +P+    GE  A   L++FCK  +  Y EQRD+PAI GT
Sbjct: 181 LAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W    E + +      +    +W  EL WREFY+H M F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+     +  W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 ADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q +++DP 
Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKYDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR W+PEL ++ T+Y+               YP PIVDHKK       +Y   K
Sbjct: 419 GEYIRQWIPELKSLDTEYLVT-GKIPTSELRQCGYPEPIVDHKKRQAEFKQRYKEVK 474


>gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 484

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 218/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +         + + SL 
Sbjct: 13  MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGGASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALEDALRALGSGLVIR----AGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGSLPPLP 187

Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    +          Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP 
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
            T+I  W+PEL  +P +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 425 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 483


>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 487

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 164/476 (34%), Positives = 233/476 (48%), Gaps = 15/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN AL+ A   S ++V+ VFI  P+  R+  ++  +  F+  +L ++Q+
Sbjct: 6   LLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQELQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q GI   +       D    L    +      +F+N   E   ++++  ++  L   
Sbjct: 65  RYAQMGIPLIWR----LGDPSVELRCLAIDLGARAVFWNADGEPFALQQESRVQASLAAA 120

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I       +LL  PG +L  A + Y V+TPF +                          
Sbjct: 121 GIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWASLPKPDPYPIPKGLQPVSGLKAQ 180

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           P        +      P        AL          +  Y   R+ PA  GTS LSP+L
Sbjct: 181 PLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILD-YERARNFPAEPGTSLLSPHL 239

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFI 308
             G +  RQ W   +E   ++  +    +     + L WREFY+H++A +P V  G  + 
Sbjct: 240 CWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETG-AYR 298

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL KDLL+D
Sbjct: 299 RAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLID 358

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YFM +L+DGDLA+NNGGWQW+AS G D  P  RIFNP  Q  R+DP+G +IR +
Sbjct: 359 WRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEYIRRY 417

Query: 429 LPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPEL  + T  +      P  +W  +   S  YP PIVDHK        +Y A ++
Sbjct: 418 LPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473


>gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 499

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 115/482 (23%), Positives = 200/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  P+ W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    Q  +  ++ +++   N   +  +  ++  
Sbjct: 59  NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++       K    + K + + +V+A  +   +   +   P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALVWHKRMSEKIVEAPNKLKFICENQTKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + +            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ +    +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 NIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P          ++YP PI+D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHNA---VDYPDPIIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 NS 462


>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 484

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 220/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   G            DS + LD+   Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 187

Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    +          Q     +  GE  A  +L  F    +  Y + RD P   G
Sbjct: 188 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP 
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
            T+I  W+PEL  +P +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 425 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 483


>gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2]
 gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2]
          Length = 484

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 174/484 (35%), Positives = 254/484 (52%), Gaps = 17/484 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFI 61
           ++LVW RNDLR+  +  L+AA   S         + +AV+     QW +H ++  +  ++
Sbjct: 1   MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL ++ +SL+ +GI         F+   E L  +   Q VT L+ NR+Y +NE +RD 
Sbjct: 61  LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L+ +RL+ + I     D  +L P + L              K            ++    
Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180

Query: 182 IRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +     T                 +A+   +  GE+ A   L +F +  +  Y   RD 
Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVPEALTQQWAPGEEAAWQQLDQFMERSLADYRRNRDF 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS LS  LS G LS   C+    +   D   +   GA  W++EL WR+FYR +MA
Sbjct: 241 PDLSGTSGLSVALSAGTLSVASCFRAATQAMADAGSRD--GAACWIDELAWRDFYRQIMA 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V  G+ F P T+ +EW  D  L  AW +G TG+P++DAAMRQL   GWMHNRLRM+
Sbjct: 299 QFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMV 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP  QG+
Sbjct: 359 TAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQGQ 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFD +G FI HW+P+L ++ ++ IH P        L+ +YP P+V H          + A
Sbjct: 419 RFDSEGRFIAHWVPQLRDLDSKQIHEPWKQPL---LARDYPPPVVPHAGVRERVTVAFKA 475

Query: 477 AKKQ 480
           AK +
Sbjct: 476 AKSR 479


>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 474

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q   S  QS  + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQPP-SRNQSA-VVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +KGI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKEKGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + I         L     I N + Q YK++TP+ +       +  +         L+ 
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + +           + +  +  + A   L  F   ++  Y   RD P+  GTS LS
Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G++S R  +  + +           G   +L EL WR+ + H++           
Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL KDL 
Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G FIR
Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L +VP  Y++ P    +         +  +YP P+VDH +     + +Y  AK++
Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465

Query: 481 S 481
           +
Sbjct: 466 A 466


>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 472

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 220/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   G            DS + LD+   Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 116 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 175

Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    +          Q     +  GE  A  +L  F    +  Y + RD P   G
Sbjct: 176 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 293 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP 
Sbjct: 353 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 412

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
            T+I  W+PEL  +P +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 413 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 471


>gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
 gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
          Length = 456

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 183/468 (39%), Positives = 265/468 (56%), Gaps = 21/468 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R+DLR+ D+ AL+AA    +  V+A++IA+P+QW+ H    R++ + YA++  +
Sbjct: 1   MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L+  GI     +C +FDD    L + C +  +  +  +    +NE   ++ L  +L 
Sbjct: 60  REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNERALEQKLADQLP 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V    + D+ L+   +I      +Y+V+TPF +   Q +        P P        
Sbjct: 120 --VPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPEPQAAQPPLQ 177

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                        + +D ++P GEQ A   L +FC++++  Y + RD PA  GTS LSPY
Sbjct: 178 ADDAWS-------ETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALSPY 230

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            + GVLSPRQ  + L ++          GA SWLNEL+WREFYR+L+  +  +       
Sbjct: 231 FAAGVLSPRQAAHALSQQADGE------GAQSWLNELLWREFYRYLLYHHARLSRHDALF 284

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P  E   W  +   L+ W+QG TGFP++DA MRQLN  GWMHNR+RM+ ASFLVKDL +D
Sbjct: 285 PAKEA-RWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLHID 343

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE YFM QL+DGDLASNNGGWQWAA  G D+ PYFR F+P  Q +RFDP G +IR W
Sbjct: 344 WRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIRQW 403

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +PEL  VP + +H          L+ +YP P+VDHK        Q+  
Sbjct: 404 VPELAEVPARQLHK----GGPFLLAPDYPAPMVDHKAQTARFTAQFKQ 447


>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 637

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 225/489 (46%), Gaps = 27/489 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR+ DN AL AA       V+ +FI TPE+  Q         ++  SL+
Sbjct: 1   MACTIVWFRRDLRVEDNPALVAAVRA--GTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125
           Q+ +SL+  G      +  +   +I  L     Q   T++F+N  Y+    VR  K+ ++
Sbjct: 59  QLHQSLTSLGSPLIMRRAQS---AISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPV 179
            LQ  V   +F+  +L  P  I +   + +  +  F    +   ++         R    
Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175

Query: 180 PAIRLTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P I  T P+    +    +      +   +  G  NA   L  F    +  Y   R    
Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVD 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSP+L  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L
Sbjct: 236 SATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYL 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    + W+QG TG+P++DA MR+L   GW+HNR+R
Sbjct: 296 CFNFP-FTHERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIR 354

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D    +RI NP ++
Sbjct: 355 VIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLE 414

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G R+DP G ++R WLPEL+ +P+++IH P             +L  NYP PIV+   A  
Sbjct: 415 GYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARE 474

Query: 469 H---TLNQY 474
                L + 
Sbjct: 475 RLEQALAEM 483


>gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
 gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
          Length = 446

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 217/474 (45%), Gaps = 32/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+              +  F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHT-VSESGARALGLFVLDDRLL--TTSGGARRDFLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D ++ +     +    ++  +  Y      RD      
Sbjct: 58  ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDA----A 106

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   +      + PG +     + Y+V+TP+ +  +++  +A + +          
Sbjct: 107 VAEHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGSA----TVE 162

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+++        +      P GE  AL    +FC + +  Y + RD P +  TS++S
Sbjct: 163 WLDPNDVKARRVAIPEPESDGCPAGEAAALQRWAEFCDDDLAGYEDARDRPGLDATSRMS 222

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR     L            + A  +  +L WR+FY  ++   P    G  
Sbjct: 223 VYLKYGNIHPRTMLRDLARRRS-------TSAEQYRRQLAWRDFYADILFQRPDSARGNY 275

Query: 307 FIP--WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       +       AW +G TGFPI+DA MRQL    WMHNR+RMI ASF VKD
Sbjct: 276 DRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIVASFFVKD 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++FDP G +
Sbjct: 336 LHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGEY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  +P + +HA      K+    +YP PIVDH       L +Y   K
Sbjct: 396 VRRWVPELRGIPGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444


>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
 gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
          Length = 501

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 173/488 (35%), Positives = 258/488 (52%), Gaps = 30/488 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV------IAVFIATPEQWRQHGISARQSHFIY 62
           ++LVW RNDLR+  +  L AA   S  +       +AV+     QW +H ++  +  ++ 
Sbjct: 1   MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+ ++ ++L+++GI     +   F    E L  +  +  VT L+ NR+Y +NE +RDK 
Sbjct: 61  ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120

Query: 123 LEKRLQHRVICKSFDDS------------VLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           + +RL+ + +     D                P      +  +          A+     
Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           ++D R   V A  +   +   ++P       +A+   +  GE+ A   L +F ++ +  Y
Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-------EALTQQWLPGEEAAWQQLDQFVEQALAGY 233

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             QRD P I GTS LS  LS G LS   C+    +   D   +   GA  W+ EL WR+F
Sbjct: 234 RRQRDFPDIAGTSGLSAALSAGALSVASCYRAASQAMADAGSRD--GATCWIGELAWRDF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           YR +MA +P V  G+ F P T+ ++W++D     AW +G TG+P++DAAMRQL   GWMH
Sbjct: 292 YRQIMAQFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FN
Sbjct: 352 NRLRMVTAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QG+RFD +G FI  W+PEL  + ++ IH P        L+ +YP PIV H       
Sbjct: 412 PVRQGQRFDSEGRFIARWVPELRGLDSKQIHEPWKQPL---LAPDYPPPIVPHAGVRERV 468

Query: 471 LNQYYAAK 478
              + AAK
Sbjct: 469 TTAFKAAK 476


>gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 449

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 216/482 (44%), Gaps = 47/482 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           ++ L W R DLR+ DN  LY A   S+  V+ +FI   E   +       +  F++  + 
Sbjct: 3   AITLFWFRRDLRLQDNAGLYHALK-SNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q  L   G          +    E          V +++ N  YE   ++RD+ ++  
Sbjct: 62  ELQAELEHLGSSMLVR----YGKPAEVWPEILQDYLVAEVYTNHDYEPRAIQRDEAVQNL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + I        ++     +                + +N + + + ++    I    
Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSRMWKNCLASQMETIQENGIEQVI 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--------YYYVEQRDIPA 238
                  P    YP        P+   +A+                     Y + RD P 
Sbjct: 178 SFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPPTTVSRGLIKQYDKTRDFPY 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+L  +   G +S R+   R  E              ++LNELIWR+FY  ++  +
Sbjct: 238 LNGTSRLGIHFRFGTISIREKARRALELN-----------ETFLNELIWRDFYAQILFNF 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V   + F P  ++IEW  D    + W  G TG+PI+DA +R+LN  G+MHNR+RMITA
Sbjct: 287 PHVAQ-RSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYMHNRVRMITA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD DLASNNGGWQWAA  G D+ PYFR+F+P  Q ++F
Sbjct: 346 SFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVFSPAAQQEKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAA 477
           DP+  ++R W+PE                       + YP PIVDHK A    L  Y AA
Sbjct: 406 DPEYKYVRKWVPE--------------------YGTDAYPKPIVDHKFARERCLEVYKAA 445

Query: 478 KK 479
            K
Sbjct: 446 LK 447


>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 518

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 163/486 (33%), Positives = 244/486 (50%), Gaps = 19/486 (3%)

Query: 5   TAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           ++M+   + W R DLR++DN  L  A  +S +K++ +F    +   Q  ++  +  ++  
Sbjct: 41  SSMTNSVIFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLG 99

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +++S  Q G      Q     +  + +       +V  +F+N   E    +RD  +
Sbjct: 100 CLQDLRESYQQLGGQLLIFQ----GNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQV 155

Query: 124 EKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLR 175
            + LQ R I            P   +       YKVYTPF ++ ++            L 
Sbjct: 156 IEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLE 215

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQR 234
           SL    I     +   ++P   D  +    P+    GE  A   L  FC   +Y Y EQR
Sbjct: 216 SLSEEEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQR 275

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P I GTS LSP    GV+  R+ W   L         + +    +W  E+ WREFY+H
Sbjct: 276 NYPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQH 335

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            M F+P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR 
Sbjct: 336 CMYFFPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 394

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 395 RMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 453

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +++DP G +IR W+PE++++ T+Y+            S  Y  PIVDHK+       +
Sbjct: 454 QAQKYDPDGEYIRLWVPEISSLDTEYLVT-GKIPPLEAHSCGYLQPIVDHKQQQREFKER 512

Query: 474 YYAAKK 479
           Y   K 
Sbjct: 513 YKQIKN 518


>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 484

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 217/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +         + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGVASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L  +G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YK++TPF +  +  L        P     L 
Sbjct: 128 LRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRSLPPLP 187

Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +      +          Q        GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 AALKTDALDTLQLVPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLEARRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478
            T+I  W+PEL  +  +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 425 ATYITRWVPELGKLAVKERFAPWLHPLSLARFASEYPRAPIIGLAEGRDAALAAYAKSR 483


>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
 gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
          Length = 467

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 236/480 (49%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G   +  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462


>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
           JF-5]
          Length = 471

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 27/482 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P              +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDP----AAETGGASRWWLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFTARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I       +++  P  I      +Y VYTPF +A             P       
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAG 170

Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P    +    +          +   +  GE  A   L  F  +    Y  QRD+P I G
Sbjct: 171 DPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGIAG 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L  G ++    W            +       +L ELIWREF  +L+   P +
Sbjct: 231 TSGLSPHLHWGEIAIDAVWRAAVAAPGRDAARQT-----FLKELIWREFAAYLLWHTPDL 285

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P       + W + +  L AW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 286 AT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG++FDP 
Sbjct: 345 VKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R ++PE+ N+P +Y+HAP    +         L  +YP P+VD  +     L  + 
Sbjct: 405 GAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERALAAFA 464

Query: 476 AA 477
           A 
Sbjct: 465 AI 466


>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 479

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 247/480 (51%), Gaps = 17/480 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ L+W R DLR+ DN AL+ A   S  +V+ VF+  P+  ++  ++  +  F+  +L +
Sbjct: 3   SLVLLWHRRDLRLGDNTALHGAAQRSP-QVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+  +Q GI   + +     D    L     +     +F+N   +    +++  +   L
Sbjct: 62  LQERYAQMGIPLLWRR----GDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I       +LL  PG +L  A + Y V+TPF +      +          +++   
Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSS--LPKPDPFPIPKSLQAVS 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245
            +    +P   D  F     +   GE  A  +L  FC+  +++ Y   RD PA QGTS L
Sbjct: 176 SLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSLL 235

Query: 246 SPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SP+L  G +  R+ W    + E      + +S   +W  EL WREFY+H++  +P V  G
Sbjct: 236 SPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVESG 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +    + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM +L+DGDLA+NNGGWQW+A  G D  P  RIFNP  Q  R+DP+G +
Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGEY 413

Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR +LPEL  + T  +      P  SW  +      YP PIVDHK        +Y A ++
Sbjct: 414 IRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQQ 473


>gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 474

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q   S  QS  + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQPP-SRNQSA-VVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +KGI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKEKGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + I         L     I N + Q YK++TP+ +       +  +         L+ 
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + +           + +  +  + A   L  F   ++  Y   RD P+  GTS LS
Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G++S R  +  + +           G   +L EL WR+ + H++           
Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL KDL 
Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G FIR
Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L +VP  Y++ P    +         +  +YP P+VDH +     + +Y  AK++
Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKEK 465

Query: 481 S 481
           +
Sbjct: 466 A 466


>gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 485

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 184/472 (38%), Positives = 263/472 (55%), Gaps = 7/472 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVWLR+DLR+ DN     A   +     A+F A P QW+ HG +A +  F   +L+
Sbjct: 12  MNT-LVWLRSDLRLHDNP--ALAAAAAQGHTHALFFAAPGQWQSHGDAAIKIDFWRRNLV 68

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L++ G         ++ ++ + L  +C Q R+  +  N ++ INE RRD    +R
Sbjct: 69  ALHQALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQR 128

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I  +      LLPPGS+ N     Y+V+TP+ +A  + L  A    +  P  +  
Sbjct: 129 LQAEGIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKLRVAPPAPVRAPKAQGP 188

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                ++P GE  A   LR F  + +  Y E+RD+PA+ GTS L
Sbjct: 189 AFAPAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSAL 248

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSP QC           +   ++G   W+ E++WREFY+HL+A YP++ M +
Sbjct: 249 SPYLACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMHQ 308

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P  P T  + W        AW+ G TG PI+DAA RQL   GWMHNRLRMI+A FL K+L
Sbjct: 309 PMRPETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKNL 368

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP  Q ++FDP G F+
Sbjct: 369 LIDWRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVFL 428

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R WLPEL N+ ++ IH P     +      YP  IVD K +    +  +   
Sbjct: 429 RRWLPELANLDSKSIHEPSDAQRRASA---YPKAIVDLKSSRLRAIEAFSRL 477


>gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
 gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
          Length = 493

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 200/468 (42%), Positives = 268/468 (57%), Gaps = 17/468 (3%)

Query: 10  HLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI   +
Sbjct: 12  ALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQIDFIQRHV 71

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L+  GI F+  Q  +F +   +L SYC +  V ++F        E+   K  + 
Sbjct: 72  NLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQA 128

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
            L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA    
Sbjct: 129 CLDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAVPAPLGP 188

Query: 184 -LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            L  P   S   RF           +  GE  A  IL  F K+KV  Y + RD PA+ GT
Sbjct: 189 MLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDRDFPALDGT 248

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL++GVLSPRQC   L   F D+++   S   +WLNELIWREFYRHL+  +P + 
Sbjct: 249 SVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLS 308

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 309 KGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 368

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G
Sbjct: 369 KHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDG 428

Query: 423 TFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           +FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 429 SFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476


>gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 219/485 (45%), Gaps = 29/485 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA       V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAA--HQGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I     +  L   P  I     + +  ++ + K  +   +++ +   P   I
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T  V         +   +              +  G  NA  IL +F  +++ YY + 
Sbjct: 176 PITAAVEAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
            +      TS LSPYL  G +S R+ +   + +      D   + +     +L  +  RE
Sbjct: 236 SNKVVGNATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP IQG +FDP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 490

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 163/462 (35%), Positives = 230/462 (49%), Gaps = 17/462 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN AL  A H +   V+ V+I       +    A    ++  SL  +  
Sbjct: 13  ILWFRRDLRLADNPALNKA-HATGRPVVPVYIHDEGTAVRP-AGAASLWWLDKSLRALAG 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL+++G      +     DS   L     Q     +F NR +E     RD  +   L+  
Sbjct: 71  SLAERGATLILRR----GDSETELRRLIDQTGADTVFLNRLFEPEAWTRDADIAHGLKTD 126

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +     +  LL  PGS+LN +   YKV+TPF KAL          + P       G  +
Sbjct: 127 GVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGPRQLGAAPGLES 186

Query: 190 PSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                       P  +    +  GE  A   L +F    +  Y   RD PA   TS+LSP
Sbjct: 187 DDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPAEPATSRLSP 246

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +SP + W   ++   D        A  ++ ELIWR+F  HL+  +P++   K F
Sbjct: 247 HLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAELIWRDFSAHLLHHFPTLPD-KAF 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  + + W  D     AW +G TG+PI+DA MR+L   G MHNR+RMI ASFL+KDLL+
Sbjct: 305 RPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVASFLIKDLLI 364

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE +F   L+D DLASN+  WQW A +G D+ PYFRIFNP  QG++FD +  +++ 
Sbjct: 365 DWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKFDAEARYVKR 424

Query: 428 WLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           W+PEL  VP ++IHAP +   +        L   YP PIVDH
Sbjct: 425 WIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIVDH 466


>gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
 gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
          Length = 493

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 268/468 (57%), Gaps = 17/468 (3%)

Query: 10  HLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI   +
Sbjct: 12  ALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHV 71

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L+  GI F+  Q  +F +   +L SYC +  V ++F        E+   K  + 
Sbjct: 72  NLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQA 128

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA    
Sbjct: 129 CLDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAPLGP 188

Query: 186 GPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               P  I     +PF         +  GE  A  IL  F ++K   Y + RD PA++GT
Sbjct: 189 MLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEGT 248

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +P + 
Sbjct: 249 SVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLS 308

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 309 KGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 368

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G
Sbjct: 369 KHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDG 428

Query: 423 TFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           +FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 429 SFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476


>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 476

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 155/484 (32%), Positives = 235/484 (48%), Gaps = 19/484 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+ + + W R DLR++DN  L  A   S +K++ +F   P   ++  I+  + +++   L
Sbjct: 1   MTNIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q+S  + G      Q        + +       +V  + +N   E     RDK +++
Sbjct: 60  RNLQESYQKLGGQLLIFQ----GQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKE 115

Query: 126 RLQHRVICKSFDDSVLLP---------PGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            LQ + I        LL                     ++ +    KA I   ++     
Sbjct: 116 ALQEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSL 175

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                  +                   I  +  +GE  A   L  FC   +Y Y EQR+ 
Sbjct: 176 SDEEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRNF 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLM 295
           PAI GTS+LSP    GV+  R+ W    E + +      +    +W  E+ WREFY+H +
Sbjct: 236 PAIDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHCL 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F+P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RM
Sbjct: 296 YFFPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 355 IVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +++DP G +IR W+PE++++ T+Y+            S  YP PIVDHK        +Y 
Sbjct: 414 QKYDPDGEYIRLWVPEISSLDTEYLVT-GKIPPLEAHSCGYPQPIVDHKHQQREFKERYK 472

Query: 476 AAKK 479
             K 
Sbjct: 473 QIKN 476


>gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
 gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
          Length = 467

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 173/480 (36%), Positives = 240/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY A    D  +I +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++            F D +E L           K+F+NR        RD   ++  
Sbjct: 57  QQELAK-----TARLQIMFGDPMECLQQLKEAVPTWNKVFFNRDETGYGASRDAAAQQFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R I         L     +     + YK++TP+ K   + + +  L+    P      
Sbjct: 112 DERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEMKEMPLKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GEQ A   L  F KE +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEIVHDL--PVSDAGEQAANARLASFIKEDLTDYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++           G  ++  EL WR+FY  +   +P     +P
Sbjct: 230 RYLRTGEISIRTIWQALQQTEA------TEGRATFEKELCWRDFYNMIYVSFPDQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW       + W++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPAGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +K        +  +YPLPIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRKLAIARYEFSKEH 462


>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 470

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 170/481 (35%), Positives = 247/481 (51%), Gaps = 26/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLRI DNKALY A   +D  +I +F   PEQ+     S     F ++S+   
Sbjct: 2   TSVMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQFISG--SPSHQAF-FSSVANF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           +K + +     Q      F + IE L           K+F+N+       +RDK      
Sbjct: 57  KKEIDK-NAHLQI----MFGEPIELLKRLKDAIPAWDKVFFNQDETGYGAKRDKAARAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           ++  I         L     +   + + YK++TP+ K   + + +   +S+  P   +  
Sbjct: 112 EYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKK 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F        +    + GE+ A   L+ F K  +  Y + RDIP    TS L
Sbjct: 172 ELFPHDEEQFEKLIQDLPELDLKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQTSHL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G +S R  W  L++       KP  G   +  EL WR+ + +++         +
Sbjct: 232 SRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRD-FYNMIYVSFPNQKNE 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P       IEW  +    + W++G TG+P++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 285 PIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 344

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN  GWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 345 LIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++ EL+N+P ++IH P    +         L  +YPLPIVDHK+     +++Y  +K+
Sbjct: 405 RKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYEFSKE 464

Query: 480 Q 480
           Q
Sbjct: 465 Q 465


>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
 gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
          Length = 560

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 65  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 123

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 124 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 179

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178
            L +       F D V+     +LN   + Y V+TP++ A +  +   D         L 
Sbjct: 180 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 239

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A    G    +       +    +  +      +    L      ++  Y  +RD PA
Sbjct: 240 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDFATRMDDYHARRDYPA 299

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++   
Sbjct: 300 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 355

Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 356 PDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 415

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 416 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 475

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A   
Sbjct: 476 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARAA 535

Query: 470 TLNQYYAAK 478
           TL +Y  AK
Sbjct: 536 TLERYAPAK 544


>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
 gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
           T118]
          Length = 492

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 163/490 (33%), Positives = 234/490 (47%), Gaps = 28/490 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN A       +  ++  VF+   +       + R+  FI ASL ++ 
Sbjct: 8   GLMWFRRDLRVIDNAA-LCLALAACRQLHCVFVFDRDILDTLPRADRRVEFIRASLCELD 66

Query: 70  KSLSQK----GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +L Q     G+            + E + +     +V  +F    YE   + RD  +  
Sbjct: 67  VALGQLSGKAGVGLIVRHAV----ASEEIVTLAKTLQVQAVFAAHDYEPQALARDARVRG 122

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--- 181
            L H  I   +  D V+     IL+     Y V+TP++   +  +    LR         
Sbjct: 123 ALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVAQ 182

Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               R  G   P        +    +  +      +    L +   E++  Y E RD+PA
Sbjct: 183 ALVPRPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFFERMDSYHETRDLPA 242

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S L  +L  G +S RQ      +  +        GA  WL ELIWR+FY  ++A +
Sbjct: 243 VKGPSYLGVHLRFGTVSVRQLAATALQRQIQGS----RGAAVWLGELIWRDFYFSILANF 298

Query: 299 PSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P V     KP     +         L QAW +G TG+P++DAAM Q+N  G+MHNRLRM+
Sbjct: 299 PHVAQGAFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMV 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFLVKDL +DWR GE+YF   L D DLA+NNGGWQW +S+G D+ PYFRIFNP  Q +
Sbjct: 359 AGSFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSE 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470
           +FD  G FIR +LP+L  +P++ IHAP +       ++   L  NYP PIV H  A   T
Sbjct: 419 KFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALT 478

Query: 471 LNQYYAAKKQ 480
           L +Y   KK 
Sbjct: 479 LQRYAVVKKH 488


>gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
 gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
          Length = 491

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 165/485 (34%), Positives = 241/485 (49%), Gaps = 29/485 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            LVWLR DLR  D+ ALY A      +V   F+   +        S R+  FI+AS+L++
Sbjct: 9   ALVWLRRDLRCDDHAALYHALRR-FGRVYCAFVFDTDILDALPTRSDRRVEFIHASVLEL 67

Query: 69  QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            + L++        G             + E +        V ++  NR YE   + RD+
Sbjct: 68  HQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAIERDR 123

Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRS 176
            + + LQ   I  S      L     +L    + Y V+TP+R+A +Q L          +
Sbjct: 124 RVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTPYPVA 183

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                +            +   +    +  +           L +    ++  Y E RD 
Sbjct: 184 SHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQQLLQDFMPRMAAYHEARDY 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY  ++ 
Sbjct: 244 PGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFYFMILW 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQL+  G+MHNRLRM+
Sbjct: 300 HHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMV 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q +
Sbjct: 359 VASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470
           +FDPQG FIR +LPEL  VP  +IH P +            L ++YPLP+VDH +A   T
Sbjct: 419 KFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERT 478

Query: 471 LNQYY 475
           L +++
Sbjct: 479 LMRFH 483


>gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
          Length = 476

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/482 (33%), Positives = 251/482 (52%), Gaps = 21/482 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + +VW RNDLR +DN AL AA    +A ++ VFI       +  + A    +++ SL +
Sbjct: 4   PLAIVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESLKR 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             +S +  G    +       DS+  L +   +   T +++NR+YE +   +D  +++ L
Sbjct: 63  FAQSWNSCGGDLIFRN----GDSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKREL 118

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAI 182
                  KS++ S+L  P +I N   + YKVYTP+ KA+    V   +      +  P  
Sbjct: 119 FEDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFPDE 178

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                   +      +  ++  +  +   E+ A   + +F   +V  Y   RD P + GT
Sbjct: 179 LPQSLALDALDLLPSNQWYRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRPDLDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL  G + PRQ  + L+          + G F +L E+ WREF  +++  +P   
Sbjct: 239 SALSPYLHFGQIGPRQLVHELELR----ADLEEQGPFIFLKEIYWREFAYNVLYHFPRTA 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              P  P  E   W +++ LL  WK+G TG+PI+DA MRQL   GWMHNR+RMI +S LV
Sbjct: 295 ES-PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRMIVSSLLV 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL DW+ G  +F   L+D DLASN  GWQW+   G D+ PYFRIFNP IQGK+FDP+ 
Sbjct: 354 KHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQGKKFDPEA 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R ++PEL+ +P +YIH P    D+       +L ++YP P+V+H       L+ Y +
Sbjct: 414 LYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQRALSAYES 473

Query: 477 AK 478
            +
Sbjct: 474 FR 475


>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 486

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 164/492 (33%), Positives = 235/492 (47%), Gaps = 24/492 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V + W R DLR+TD++ALYAA   S   VI VFI          + A       A L 
Sbjct: 1   MPV-ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLE 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L Q+G              +  L     + + + +++NR Y    ++RD  ++  
Sbjct: 60  ALDHDLQQRGSRLIVRH----GQPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHW 115

Query: 127 LQHRVICKSFDDS---------VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           L+ + +                                K ++       + LV A  + +
Sbjct: 116 LREQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFV 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P+   + P+ PS     F+           I +Q       +  K  V  Y + R++P
Sbjct: 176 APPSDLASLPI-PSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMA 296
           A  GTSQLS  L +G +S RQC  +  +   + L  + + G  +WL EL WR++Y  L+ 
Sbjct: 235 AEAGTSQLSVDLRMGTISIRQCLKQAVDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLIY 294

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P   +     P  ++I W  D     AW+QG TG+PI+DA  RQLN + WMHNR+RMI
Sbjct: 295 HNP-YMLNGSLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRMI 353

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG 415
           +ASFL+KDLL+DWR GE YFM QL DGD  +NNGGWQWAA  +G  + PYFRIFNP  Q 
Sbjct: 354 SASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           K+ DP G +IR ++PEL NVP  YIH P +            +  +YP P+V+H  A   
Sbjct: 414 KKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARER 473

Query: 470 TLNQYYAAKKQS 481
            L  Y  A + +
Sbjct: 474 ALAAYRTALQTN 485


>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera]
 gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera]
          Length = 696

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 223/488 (45%), Gaps = 28/488 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VI VFI +PE+  Q         ++  SL+ +  
Sbjct: 6   IVWFRRDLRVEDNPALVAAARA--GIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDS 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      +     D++  L     Q   T++FYN  Y+   + RD  +++ L  H
Sbjct: 64  SLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIH 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            +   +F+  +L  P  + +   Q +  +  F    +    + +   L    +    P  
Sbjct: 121 NIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGR 180

Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                         +       +   +  G  +A   L  F K  ++ Y   R       
Sbjct: 181 ISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNAN 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           TSQLSP+L  G +S R+ ++  + +      +     +     +L  + +RE+ R+L   
Sbjct: 241 TSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIGFREYSRYLSFN 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P     +  +   +   W  D +  ++W+QG TG+P++DA MR+L   GW+HNR+R++ 
Sbjct: 301 FP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRVVV 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     R+ NP I+G +
Sbjct: 360 SSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEGYK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC---H 468
           FDP+G ++R WLPEL+ +PT++IH P             +L  NYPLPIVD   A     
Sbjct: 420 FDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSARDQLQ 479

Query: 469 HTLNQYYA 476
            +L + + 
Sbjct: 480 QSLAEMWE 487


>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 476

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 240/485 (49%), Gaps = 23/485 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +V  RNDLR+ D+ AL+ A       V+ V++    +       +    +   SLL+
Sbjct: 4   PTTIVLFRNDLRLADHPALWYAAQR--GPVLPVYL----RHAADSYGSAWRWWHGESLLK 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q +L+Q+G+       +    +   L           +++NR+Y+ + +  D+ L+   
Sbjct: 58  LQAALAQRGLPLLLRSGT----AKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLF 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAI 182
           +   +        LL          Q Y+V+TPF KA++        +          AI
Sbjct: 114 KELGVEARSFPGNLLVEPWEHLREGQPYRVFTPFWKAMLARHRFPQPLAEPESYRAPTAI 173

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +               +   + +GE+ A   LR F  E + +Y E R++P     
Sbjct: 174 PASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGKPFV 233

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+ G +SPRQ W  L     +     +    ++L EL WREF  HL+  +P + 
Sbjct: 234 SRLSPYLAHGEISPRQIWWHLSRLAEEQGAWRR-NVDAFLRELGWREFSWHLLYHFPDLP 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P  P  ++  W +D   L+AW +  TG+PIIDA MR+L   GWMHNR+RMI ASFLV
Sbjct: 293 R-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W+ GE +F   L+D DLA+N+  WQW A  G D+ PYFR+FNP +Q ++FDPQG
Sbjct: 352 KDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQKFDPQG 411

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R WLP+L  +P  +IHAP              L   YP P+VDH +A    L  + A
Sbjct: 412 DYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEAREAALAAWEA 471

Query: 477 AKKQS 481
            ++++
Sbjct: 472 IRREN 476


>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
 gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
          Length = 531

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/471 (30%), Positives = 228/471 (48%), Gaps = 23/471 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR+TD  AL  A   S   ++ VFI          +      +++ SL ++ 
Sbjct: 49  AIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWWLHGSLARLD 107

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L++ G      +     D+   ++          +++NR+Y   +   D  L+  L+ 
Sbjct: 108 TALARHGGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKA 163

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIR 183
           R +     +  L   P  +L  +   Y+V+T + +A  ++      + A  R    P  +
Sbjct: 164 RGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPERIAFHPWPQ 223

Query: 184 -----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                       +  P   D+     D      E  AL  L  F    +  Y + RD P 
Sbjct: 224 AVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPD 283

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF   L+  +
Sbjct: 284 RPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREFSYTLLYHF 343

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMHNR+RM+ A
Sbjct: 344 PALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVA 402

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFNP  QG++ 
Sbjct: 403 SFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKC 462

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           DP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 463 DPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 513


>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
           ferrodiazotrophum]
          Length = 468

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 226/476 (47%), Gaps = 21/476 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R++LR++DN+ L  A    +  V+ V++  P           +  +   SL ++ 
Sbjct: 3   SIVWFRHNLRLSDNRPLSLAAK--EGAVLPVYVHDPTLSLFPD--RVRQRWRKRSLWELD 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL + G             S E L     + R  +++  R     +   ++ LE  L+ 
Sbjct: 59  RSLRKLGNRLHVFS----GSSCEILLKVATRVRAERVYAFRGLTGEDRALEERLENELRK 114

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +         L PP          +K++TP+ +   Q+ +       P     L    
Sbjct: 115 AGVSLHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPEHPLPAPSRVDSLPSLA 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +                  F  GE  A+H LR+F +  +  Y  +RD PA +GTS+LSP+
Sbjct: 175 SLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLSPH 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S R+   RL+E       +       +L EL WREF  HL+ F+P +    P  
Sbjct: 235 LASGEISVREIVQRLQESDAPGKDR-----EKFLEELGWREFSAHLLFFHPEML-VDPLK 288

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR-QLNTIGWMHNRLRMITASFLVKDLLV 367
                +EW  D     AWK+G TGFP++DA M  +L   GWMHNR+RM+ ASFLVK+L V
Sbjct: 289 KEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLVKNLGV 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+ G  +F  +LLD D A+N   WQW A  G D+ PYFRIFNP +QG+R+DP G ++R 
Sbjct: 349 SWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHGKYVRR 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSL-----NYPLPIVDHKKACHHTLNQYYAAK 478
           +LPEL+ +P + IH P       D         YP PIVD  ++    L +Y   +
Sbjct: 409 FLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIVDLSESREAALRRYRRFR 464


>gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
 gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
          Length = 632

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 167/488 (34%), Positives = 257/488 (52%), Gaps = 22/488 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  +   +I +++ +P+ W  H +S  +  F   S+  
Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVEL 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           +QK LS+  I           +  + L     +  V  +F N +YE +E  R ++L+   
Sbjct: 198 LQKELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  +    + D  ++PPGS+   A + Y VY+P+ +A I +L       +  P      
Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNP 317

Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232
                   + F++   ++                 +P GE  A+  L +F  EK+  Y +
Sbjct: 318 TNFRDKFSKLFEFSVPSLPECKALTPEEKERFSRLWPAGEAAAVDRLERFLVEKIVKYKD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+ WR+FY
Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      I W  ++    AW +G TG+PI+DAAMR LN  G+MHN
Sbjct: 438 RHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNHTGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 498 RLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKNDLSLNYPLPIVDHKKACH 468
            IQ ++FD  G FIR W+ EL+ V  + +H P++      +    + YP P+V+H+ A  
Sbjct: 558 WIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVEHRVARE 617

Query: 469 HTLNQYYA 476
             L +Y  
Sbjct: 618 RCLKRYKE 625


>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 484

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 213/479 (44%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            +S + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I     +  L   P  +       YKV+TPF +  +  L        P     L 
Sbjct: 128 LRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLPPLP 187

Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +                 Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 ASLKTDALDMLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLETHRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478
             +I  W+PEL  +  +   AP         ++  YP  PI+   +     L  Y  ++
Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYPRAPIIGLAEGRDAALAAYTKSR 483


>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
 gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
          Length = 512

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 197/514 (38%), Positives = 272/514 (52%), Gaps = 44/514 (8%)

Query: 7   MSVH--------LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGIS 54
           MSV+        L+W R DLR+TDN+A  AAC     +  AK+ A++IATP QW QH I+
Sbjct: 1   MSVNQNRSGKHALMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIA 60

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             Q  FI   +  + + L   G+ F+  Q  +F D   +L SYC +  + ++F     + 
Sbjct: 61  PIQLDFIQRHVNLLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFA---GQE 117

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            E+   K  +  ++  +     D+  LLPPG++LN +  MY+V+TPF +   +   +  +
Sbjct: 118 PEINEQKRDQACVEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAI 177

Query: 175 RSLPVPAI----------------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
             L VPA                             +                  +  GE
Sbjct: 178 LPLGVPAPLGSILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGE 237

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             A  +L +F ++KV  Y + RD PAI GTS +SPYL+IGVLSPRQC   L + F ++++
Sbjct: 238 GQAKRLLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIV 297

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
              S   +WLNELIWREFYRHL+  +P +  G  F    + + W  +     AW +G TG
Sbjct: 298 DDTSPGRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTG 357

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+DWR GE YF   L+DGDLA+NNGGW
Sbjct: 358 YPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGW 417

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QW+A  G D+ PYFRIFNP  Q ++FDP G FIR +LPEL +     +H P+     +  
Sbjct: 418 QWSAGCGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLF 477

Query: 453 S-------LNYPLPIVDHKKACHHTLNQYYAAKK 479
                    +YP  IV+H  A    L      KK
Sbjct: 478 EAPLFASQADYPNAIVEHNAARARALTVLGVLKK 511


>gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
 gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
          Length = 453

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/470 (31%), Positives = 223/470 (47%), Gaps = 24/470 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLR+ DN AL  A   +D  V+ +F+  P  W      A +  ++ ASL  + 
Sbjct: 7   AVLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWG--PAGAARRAYLGASLRALD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
            SL ++G      +     D    +          ++     +     RRD  +E+ L  
Sbjct: 63  ASLRERGTRLSVVR----GDPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQALTG 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                        + PG + N A   Y+V+TPF +A  ++  +  +          TG +
Sbjct: 119 AGAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRGPVGV-----PEGTGWL 173

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             +        P        P   + A         ++V  Y E RD PA+ GTSQ+S +
Sbjct: 174 RLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTSQMSAH 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR     L             GA ++  EL WREFY  ++   P     +   
Sbjct: 234 LKWGEIHPRTMLADLARRRGA-------GAATYRKELAWREFYADVLHARPETAR-QYLR 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P   ++ +++    L AW+ G TGF ++DA MRQL   GWMHNR+RMITASFLVKDL ++
Sbjct: 286 PEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVKDLHLE 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W++G  +F+  L+DGDLASN  GWQW A  G D+ PYFR+FNPT QG+RFDP+G ++R W
Sbjct: 346 WQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGEYVRRW 405

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL +     +  PH        ++ YP PIVDH       L ++   +
Sbjct: 406 VPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRWERIR 453


>gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 491

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 166/485 (34%), Positives = 242/485 (49%), Gaps = 29/485 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            LVWLR DLR  D+ ALY A      +V   F+   +        S R+  FI+AS+L++
Sbjct: 9   ALVWLRRDLRCDDHAALYHALRR-FGRVYCAFVFDTDILDALPTRSDRRVEFIHASVLEL 67

Query: 69  QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            + L++        G             + E +        V ++  NR YE   + RD+
Sbjct: 68  HQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAIERDR 123

Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRS 176
            + + LQ   I  S      L     +L    + Y V+TP+R+A +Q L          +
Sbjct: 124 RVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTPYPVA 183

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                +            +   +    +  +          +L +    ++  Y E RD 
Sbjct: 184 SHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQLLLQDFMPRMAAYHEARDY 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY  ++ 
Sbjct: 244 PGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFYFMILW 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQL+  G+MHNRLRM+
Sbjct: 300 HHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMV 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q +
Sbjct: 359 VASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470
           RFDPQG FIR +LPEL  VP  +IH P +            L ++YPLP+VDH +A   T
Sbjct: 419 RFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERT 478

Query: 471 LNQYY 475
           L +++
Sbjct: 479 LMRFH 483


>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
 gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
          Length = 501

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 155/498 (31%), Positives = 237/498 (47%), Gaps = 30/498 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---------- 56
           M+  L+W R DLR+ DN AL+AA       VI V++            AR          
Sbjct: 1   MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59

Query: 57  --QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
                +++ SL  +  ++ ++G      +     D +  L           +++NR+YE 
Sbjct: 60  AASRWWLHHSLEALDAAVRERGGRLILRR----GDPLAELQEIVRATGAKGVYWNRRYEP 115

Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
               RD  ++  L    +  K+F+ ++L  P +ILN     ++V++ + +  +   V A 
Sbjct: 116 AARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAP 175

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYY 229
            +    P           ++      P  A D      +  GE +A   + +F    +  
Sbjct: 176 RKLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDR 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWR 288
           Y E+RD P   GTS LS  L  G +SPRQ W  ++    +  + P  +GA  +L EL WR
Sbjct: 236 YDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGVFPPSNGARIFLAELGWR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           EF  HL+  +P          +       + +   L+AW++G TG+PI+DA MRQL   G
Sbjct: 296 EFAYHLLWHFPHTIEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQLWQTG 355

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RMI ASFLVK L + W  G  +F   L+D DLA+N  GWQW+A  G D+ PYFR
Sbjct: 356 WMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAPYFR 415

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIV 461
           IF P +QG++FD  G ++R W+PEL  +P +++HAP              L  NYP P+V
Sbjct: 416 IFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPRPVV 475

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH  A    L  +   ++
Sbjct: 476 DHAAARAEALAAFRQLRE 493


>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
 gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
          Length = 477

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/483 (30%), Positives = 231/483 (47%), Gaps = 19/483 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVWLR DLR+ D  AL  A   ++ ++  V+I  P + R   + A    +++ SL 
Sbjct: 1   MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETR-PTVGAASCWWLHHSLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L+  G       C +   S E L  +        ++     E    +++  + + 
Sbjct: 59  ALDAELASAGSRL----CLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEA 114

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +  +   D +L  P ++ N +   Y+ +TPF +++   L        P       
Sbjct: 115 LAAIGVRLEVLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGLPE 174

Query: 186 GPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               P  +            + + P +  G   A   L +F       Y E+RD PA  G
Sbjct: 175 AIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +S R  W+ +++    +         ++L EL WREF  HL+   P +
Sbjct: 235 TSRLSPHLHFGEISIRAVWHAVRDA-QQMQPAAADALDTFLAELGWREFAYHLLWQQPEL 293

Query: 302 CMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                   ++      + D  LL AW++G TG P++DA MR+L   GWMHNR+RM+  SF
Sbjct: 294 HRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGSF 353

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK+L + W+ GE +F   L+D DLASN+ GWQW +  G D+ PYFRIFNP  QG+RFDP
Sbjct: 354 LVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFDP 413

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
            G ++RHW+PE+  +P  +IH P +            L  +YP P+VD   +    L  +
Sbjct: 414 DGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEALAAF 473

Query: 475 YAA 477
           +A 
Sbjct: 474 HAL 476


>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 472

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 222/480 (46%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHDP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDDTLRALGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRN 115

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180
           L+ R I     ++ L   P  +       YKV+TPF +  +  L     V A     P+P
Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A   T  +    +    D+     +   P GE  A  +L  F    +  Y E RD P   
Sbjct: 176 ATLETVALESLALLPRLDWDHGFWEHWQP-GEAGAHEMLEIFIDGALDGYRENRDRPDRV 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+  +P 
Sbjct: 235 GTSQLSPHLHFGEIAPWRIASTLEAQRNARNAAEIDG---YIRQLGWRDFSYHLLHHFPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI AS 
Sbjct: 292 TTNQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
           Q T+I  W+PEL  +  +   AP         L+  YP  PI+   +     L  Y   +
Sbjct: 412 QATYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRSPIIGLAEGRDAALAAYAKTR 471


>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
 gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
          Length = 483

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 236/490 (48%), Gaps = 34/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L+WL N+LR++DN AL+AA    +++ +V+  +I          I    + +++ SL   
Sbjct: 4   LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTA--NPWPIQGAAAWWLHHSLAAF 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             S+  KG V    +     D    +     Q ++  ++ ++ +E  EV+    + K  +
Sbjct: 62  TNSIKNKGGVLSLFE----GDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWCK 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180
              I CK F   +LL P + LN   + ++V+TP+ KA            + ++L  +   
Sbjct: 118 QHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWAA 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                   +  +  GE+ A   LR+  ++K+  Y   RD PA+ 
Sbjct: 178 KKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAVD 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR---HLMAF 297
           GTS LS +L  G +SPRQ W ++                 +L +L+WR+F     H    
Sbjct: 238 GTSLLSAHLRFGEISPRQIWQQV------ATQMDGEQCAPFLRQLMWRDFSYALLHHWPH 291

Query: 298 YPSVCMGKPFIPW-TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P     + F  +  +K      +  L AW+ G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 292 IPQQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRMI 351

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L + W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP +QG+
Sbjct: 352 VASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQGE 411

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN--YPLPIVDHKKACH 468
           +FD QG +I+ W+PEL  +P ++IHAP              L  N  YPLPIVDHK A  
Sbjct: 412 KFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDHKYARE 471

Query: 469 HTLNQYYAAK 478
             L  Y   K
Sbjct: 472 AALAAYQQLK 481


>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
 gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
          Length = 428

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 217/470 (46%), Gaps = 45/470 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A ++++  V+ +FI   E   Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLEDNVGLFHALNSTED-VLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++ G              IE       +  +T ++ N  YE    +RDK + +   
Sbjct: 60  QSELNKIGKSLAVFH----GKPIEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   +  D V+     ++      Y VYTPF K   +N  +  L             
Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKLVHYTSEDKLDKVA 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D  F+  +                  +  +  Y   R+ PA+  TS L  
Sbjct: 176 KHSYPFLSLTDIGFEKSNIKVSA---------FDVSENLIQNYEATRNFPALNKTSYLGI 226

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +S R+   +   E  D          ++ NELIWREF+  ++  +P       F
Sbjct: 227 YLRFGAVSIRKMIAKAIAEKND----------TFWNELIWREFFMQILWHFPH-TYNSSF 275

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  + I WN +  L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K LL+
Sbjct: 276 RPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKHLLI 335

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD    +I+ 
Sbjct: 336 DWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PEL    T+Y                YP PIVDHK+A    L  Y  A
Sbjct: 396 WIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426


>gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 470

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 172/480 (35%), Positives = 244/480 (50%), Gaps = 24/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ DN AL+ A  +S+ +++ VF   PEQ  +      QS F +AS+L  
Sbjct: 2   VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKST-VNQSAF-FASVLYF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  L ++GI         + D  +   S   +      +F+N         RD+      
Sbjct: 59  KNKLKKQGINLNI----MYGDINDCFASLKQKLPDWHDIFFNFDERGFGRNRDQKSVAFF 114

Query: 128 QHRVICKSFDDSVLLPPG--SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + ++  K+         G   +   +   YKV+TP+ K  I+    A +  +    I+  
Sbjct: 115 EDKLKVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKRIKSA 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             + P N      +       +    G + A  +L +F  E +  Y E+RD PA   TS 
Sbjct: 175 RLLFPENEQLLETFIDDRFSFIKKDLGSETAKKVLNRFINESLDQYDEERDFPANDSTSH 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  G +S R  W  + +           G  +++ EL WR+FY  +   YP+    
Sbjct: 235 LSRYLRTGEISIRTVWRAIDQ------SPDSDGKSTFMKELCWRDFYNMIYVMYPNQN-V 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +        ++W  +    +AW+ G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 288 ESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKD 347

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FD  G F
Sbjct: 348 LLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDSNGLF 407

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ ++PEL NV  + IH P    +         +  NYP PIVDH  A    ++ Y ++K
Sbjct: 408 IKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARKRAISIYESSK 467


>gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 468

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 179/471 (38%), Positives = 258/471 (54%), Gaps = 7/471 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR  DN AL AAC N    V A+F+     W+ H  +  +    +  L + +
Sbjct: 3   AVVWFRSDLRTVDNPALDAACLNHK-HVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFK 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+ KGI F       F  S   +  +C + +V  ++ NR+Y ++E+ RDK      + 
Sbjct: 62  QELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQ 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  + FD ++L+PP ++       YKV+TPF +A      +    S   P        
Sbjct: 122 RDIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWR---TEVAKISDWTPESWRVENT 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S+         +     +P+G Q  +  L +F + +V  Y  +RD P++ GTS +S Y
Sbjct: 179 VASSTELPQCPLERKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSAY 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
             +G ++P+     L     +     + GA +WL E+ WREFY+HLM   P +  G+ + 
Sbjct: 239 FEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENYQ 298

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
             T+ + W       QAW  G TGFPI+DA MRQLN  GWMHNRLRMI A+FLVKDLL+D
Sbjct: 299 TETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLID 358

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YFM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR W
Sbjct: 359 WRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRTW 418

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + EL +VP+++IH PHS+L        Y  PIVDH +A    L+ +   K 
Sbjct: 419 IKELADVPSKHIHWPHSYLK--QHKTGYVSPIVDHSEARERFLSTFKQVKN 467


>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
          Length = 467

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/481 (34%), Positives = 237/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHVQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTVWQALQETKA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP   FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
 gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
          Length = 493

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 196/467 (41%), Positives = 268/467 (57%), Gaps = 17/467 (3%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI   + 
Sbjct: 13  LMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI F+  Q  +F +   +L SYC +  V ++F        E+   K  +  
Sbjct: 73  LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQAC 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA     
Sbjct: 130 LDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAPLGPM 189

Query: 187 PVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P  I     +PF         +  GE  A  IL  F ++K   Y + RD PA++GTS
Sbjct: 190 LPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEGTS 249

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +P +  
Sbjct: 250 VISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLSK 309

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K
Sbjct: 310 GHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK 369

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+
Sbjct: 370 HLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGS 429

Query: 424 FIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 430 FIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476


>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 475

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 173/477 (36%), Positives = 243/477 (50%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AAC  S  KVI VF   P+   +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             ++ G            +  + + +         + +NR  E     RD+ ++  L+ +
Sbjct: 65  RYAEAGSQLLILH----QNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEK 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAIR 183
            I        L   PG I  ++   YKVYTPF K        A   SL            
Sbjct: 121 GIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQD 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   V    +P   +  F   + +    GE+ A   L +FC   +  Y  QR++PAI GT
Sbjct: 181 VVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W   +         + + G  +W  EL WREFY+H + F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    E   W+ +  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 ASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q +++DP 
Sbjct: 360 TKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR WLPEL+++ T+ +       D+   S  YP PIVDHKK       +Y   K
Sbjct: 419 GEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKKRQKEFKQRYQQQK 474


>gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 474

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 227/474 (47%), Gaps = 14/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERSP-KIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      +        + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYRQKGSQLLIIR----GKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I        L   PG +L  +   Y VYTPF K   Q           +  +       
Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGEK 180

Query: 190 PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +                 P     GE+ A   L +FC+  +  Y E R+ PA+ GTS+L
Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPAVDGTSRL 240

Query: 246 SPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S  L  G +  R  W   L+        + K    +W  EL WREFY+H + F+P + +G
Sbjct: 241 SAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+G +
Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL +V T+Y+               YP PIVDH +        Y   K
Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471


>gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
 gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
          Length = 448

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 226/474 (47%), Gaps = 29/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W R DLR+ D   L AA  ++  + + +F+   +     G S RQ+  ++A+L 
Sbjct: 1   MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLGPAG-SPRQNQ-LFANLS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D  + +          ++  +  Y     RRD      
Sbjct: 58  ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDA----A 106

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  +V   +      + PG +       YKV+TP+ +  +++  +    +     +R   
Sbjct: 107 VAEKVELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPASTDVG-TVRWFD 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P      PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S
Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L  G + PR     L +   D       GA ++  +L WR+FY  ++   P       
Sbjct: 226 IPLKYGTIHPRTMLADLSKRLGD-------GAQAYRRQLAWRDFYADILFQRPDSARKNY 278

Query: 307 FIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +                AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVKD
Sbjct: 279 DDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  YFMSQL+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT+
Sbjct: 339 LHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL +VP + +H       K    ++YP PIVDH       L +Y   K
Sbjct: 399 VRRWVPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 447


>gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 427

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 224/430 (52%), Positives = 296/430 (68%), Gaps = 4/430 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D   FP+ E   +  LR FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFY
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHN
Sbjct: 238 RHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHN 297

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP
Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL
Sbjct: 358 TTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417

Query: 472 NQYYAAKKQS 481
           + Y AA+K +
Sbjct: 418 SAYEAARKGA 427


>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
 gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
          Length = 467

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++N        +RD+  +   
Sbjct: 57  KQEIDK-----NAHVQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIWKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQELQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP   FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K++
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKER 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
 gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
          Length = 632

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 166/487 (34%), Positives = 250/487 (51%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  K   +I V+I +P+ W  H +S  +  F   S+  
Sbjct: 139 IHWFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVEL 198

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           ++K L +  I           +  + L     +  V  +F N +YE +E  R  +L+E  
Sbjct: 199 MKKELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELM 258

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ +      D  ++PPG++     + Y VY+P+ ++ + +L          P      
Sbjct: 259 LENGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNL 318

Query: 187 PVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     FD                      ++P GE  A+  L +F  EK+  Y  
Sbjct: 319 AGFREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQA 378

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R      +       L     G  +W++E+ WR+FY
Sbjct: 379 TRNFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFY 438

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      IEW  +     AWK+G TG+PI+DAAMR L    +MHN
Sbjct: 439 RHVLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHN 498

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 499 RNRMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 558

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469
            +Q ++FD +G FIR W+ EL+ V  + +H P++     +++    YP P+V+HK A   
Sbjct: 559 WLQSEKFDEEGDFIRLWVEELSGVQGKAVHNPYADKKAAEVARKNGYPKPVVEHKFARER 618

Query: 470 TLNQYYA 476
            L +Y A
Sbjct: 619 CLARYKA 625


>gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
 gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
          Length = 446

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 216/474 (45%), Gaps = 32/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+      +       +  F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHT-VAESGARALGLFVLDDRLLKTS--GGARRDFLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  + +V +        D ++ +     +    ++  +  Y      RD      
Sbjct: 58  ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDA----A 106

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   +      + PG +     + Y+V+TP+ +  +++  +A + +          
Sbjct: 107 VAEHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTG----PDTVE 162

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P ++        +     +  GE  AL    +FC++ +  Y + RD P +  TS++S
Sbjct: 163 WMDPDDVKTRRVTIPEPESDGYAAGEAAALERWAEFCEDDLAGYEDARDRPGLDATSRMS 222

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR     L              A  +  +L WR+FY  ++   P    G  
Sbjct: 223 VYLKYGNIHPRTMLRDLARRRSK-------SAEQYRRQLAWRDFYADILFQRPDSARGNY 275

Query: 307 FIP--WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                               AW +G TGFPI+DA MRQL    WMHNR+RMI ASF VKD
Sbjct: 276 DRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIVASFFVKD 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++FDP G +
Sbjct: 336 LHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGEY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  +  + +HA      K+    +YP PIVDH       L +Y   K
Sbjct: 396 VRRWVPELRGISGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444


>gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 496

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 167/470 (35%), Gaps = 17/470 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W + DLR+ D+ AL  A       ++ ++I  P  W +   S RQ  FI   L  +++
Sbjct: 6   ILWFKRDLRVQDHPALTHAARL--GPILPLYIVEPGLWAEPDASGRQYAFICECLESLRE 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G+           D++  L+       V  L  + +                   
Sbjct: 64  DLAGLGLTLVVR----VGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVA----- 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +         P S +   L     +   R  +++  V   ++ +   A+       P
Sbjct: 115 EWARGQGVRWEEMPQSGVVRRLGSRDAWQGARDRVMRAPVLGPVQGVRGLAVASDDLPAP 174

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           + +      P +        G            + + Y       +   +  S++SP+L+
Sbjct: 175 ATLGLKDACPLRQKGGR---GAGMRALQSFLSTRGESYQRAMSSPLHGARACSRISPHLA 231

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LS R+                     S+   L WR+ +   +   P +        +
Sbjct: 232 FGTLSLREAVQTGAMAPGGRGADWARSMRSFQARLAWRDHFMQKLEDEPEIERRCLHPAY 291

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                   D+  L AW  G TG P +DA MR L   GW++ R+R +  +     L +DWR
Sbjct: 292 EGLRPREADALRLAAWSTGETGLPFVDACMRSLLATGWLNFRMRSMLMAVASYHLWLDWR 351

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
                      D +   +    Q    +G   +   RI+NP  QG   DP G F R WLP
Sbjct: 352 STGPVLAQAFTDYEPGIHWP--QVQMQSGTTGMNTIRIYNPVKQGLDQDPTGEFTRRWLP 409

Query: 431 ELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           EL  VP  Y+  P  W +    L   YP PIVD  +A        +A ++
Sbjct: 410 ELAQVPDAYLQRPWDWPEAERLLERGYPAPIVDPVEAARVAREAVWACRR 459


>gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 499

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 202/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   +   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++            + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQHMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + D            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P         SL+YP P +D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459]
 gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816]
          Length = 467

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
 gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220]
 gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
           A]
          Length = 467

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
 gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
          Length = 504

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 172/500 (34%), Positives = 247/500 (49%), Gaps = 38/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---------QHGIS---ARQ 57
            LVW R DLR  DN ALY A  + + +V   F+      +                   +
Sbjct: 14  GLVWFRRDLRTGDNAALYYALRHCE-RVWCAFVFDTTILQPLINWAHRRNAHAGKVQDAR 72

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI AS+ ++ +SL + G            D ++ +     Q  V  +F N  YE + +
Sbjct: 73  IEFILASVEELDRSLEEGGGALIVLH----GDPVDAIPKLAAQLPVDAVFTNHDYEPSAI 128

Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ +  RL+       +F D V+     +LN   + + V+TP++ A ++ L   DL+ 
Sbjct: 129 ERDETVADRLRADGRRLLTFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFDLKP 188

Query: 177 LPVPA-------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV            T       + +    P +  +     G   A   L  F      Y
Sbjct: 189 YPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDFLTRIDSY 248

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             E+RD+PA +GTS LS +L  G +S R      +      L     GA +WL+ELIWR+
Sbjct: 249 A-ERRDLPAARGTSHLSVHLRFGTVSIRTL---ARLAHEMSLRPGGQGAATWLSELIWRD 304

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +   + F    + + W           AW  G TG+P++DAAM QLN  
Sbjct: 305 FYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDAAMLQLNRT 364

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL +DWR GE YF  +L D D ++NNGGWQWAASTG D+ P+F
Sbjct: 365 GFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDAQPWF 424

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FD QG FI+ +LPEL  VP ++IHAP      +       L  +YP P+
Sbjct: 425 RIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAPWQADPDDLEDWGVVLGKDYPHPV 484

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H KA   TL +Y   + +
Sbjct: 485 VEHAKARQQTLARYGVLRSR 504


>gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980]
 gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 595

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 161/475 (33%), Positives = 241/475 (50%), Gaps = 21/475 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN AL+ A          ++A++I +P+ +  H  +  +  FI  +L  
Sbjct: 112 VHWFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFILRTLEI 171

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  +                +     +   + L+ N +YE++E+RR+  + +  
Sbjct: 172 LKRDLAELDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREARMVRDC 231

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R I      D+ ++ PG + +   + Y VYTP+ KA I ++ +         A     
Sbjct: 232 AERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDAPGKNP 291

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + F+                 +    M+P GE  A   L KF  EK+  Y E
Sbjct: 292 ASAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKINKYEE 351

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
            R+ P +  TS LS + + G LS R      ++      L     G  +W++E+ WR+FY
Sbjct: 352 HRNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 411

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W  ++   QAW +G TG+PI+DAAMRQL   G+MHN
Sbjct: 412 KHVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHCGYMHN 471

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI  SFL K LL+DWR+GE +FM  L+DGD ASNNGGW + ASTG D  PYFRIFNP
Sbjct: 472 RCRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 531

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHK 464
            +Q ++FD +G FIR W+PEL +V  ++IH P              YP  IV+HK
Sbjct: 532 LLQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFGDKVAAGVARKNGYPERIVEHK 586


>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
 gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
          Length = 479

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 228/472 (48%), Gaps = 8/472 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW R DLR+ DN AL+ A      +V+AVFI  P    +   +  + +F+  S+L+
Sbjct: 3   SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK+    G            + ++ L +         +++N   E     RD    + L
Sbjct: 62  LQKAYRTIGGRLAVR----VGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I       +LL P   +  A                +             +     
Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEAPTV 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              S           A + +   GEQ+ L  L  F +E +Y Y E+RD+P   GTS+LS 
Sbjct: 178 EEQSFPELAQLGRPFAGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGTSRLSA 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           +L  G +  R  W R  + +      + ++G   W  EL WREFY++ +   P +  G+P
Sbjct: 238 HLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQLA-GRP 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    E  +W++D    + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL KDLL
Sbjct: 297 FRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFLTKDLL 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + +  GE YFM +L+DGDL++NNGGWQWAAS G D  P  RIFNP+ Q  R+DP+  FIR
Sbjct: 357 LPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPKAVFIR 415

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            WLPEL  V T  +               Y  PIV+HK+       +Y A +
Sbjct: 416 RWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVR 467


>gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae]
          Length = 634

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 171/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W + DLR+ DN  L  A   + +K   ++AV+I +P+ W  H +S  +  F   S+  +
Sbjct: 141 HWFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLL 200

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127
           ++ L +  I           +  + L    L+  V  +F N +YE +E  R ++L+   L
Sbjct: 201 KQELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMML 260

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +      D  ++PPGS+     + Y VYTP+ +A I  L                  
Sbjct: 261 EKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPT 320

Query: 188 --------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                             +         +    ++P GE  A+  L +F  EKV  Y + 
Sbjct: 321 GFREKFTKLFDSRVPDLPDCKSLTAEEKERFHHLWPAGEAAAIDRLERFLTEKVIKYKDT 380

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYR 292
           R+ PA+  T ++S + + G L+ R      ++      L   K G   W+ E+ WR+FYR
Sbjct: 381 RNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEVAWRDFYR 440

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P VCM KPF      IEW  +    +AW QG TG+PI+DAAMR L   G+MHNR
Sbjct: 441 HVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKHTGYMHNR 500

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PYFRIFNP 
Sbjct: 501 LRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPW 560

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSL--NYPLPIVDHKKACHH 469
            Q ++FD QG FIR W+ EL +V    IH P+    +   ++    YP PIV+HK A   
Sbjct: 561 TQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVEHKFARER 620

Query: 470 TLNQYYA 476
            L +Y A
Sbjct: 621 CLARYKA 627


>gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1]
          Length = 464

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 210/475 (44%), Gaps = 23/475 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D     AA   +D  +   F+  P         A + +F+Y  L +
Sbjct: 4   STAVVWFRRDLRVADQPTFLAAADAADRALAL-FVLDPALLD--PSGAARRNFLYGCLRE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L   G      +     D  + +           +     Y      RD+ +EK L
Sbjct: 61  LDSAL---GGRLLVVK----GDPADVVPRVATAVGADTVHVAADYGPYGRERDEQVEKAL 113

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                          + PG +       +KV+TPF +A  ++  +A   +       +  
Sbjct: 114 TDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWMDP 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                          +  D   P  GE  A      F  E V  Y  QRD+PA +GTS +
Sbjct: 174 SGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGTSGM 233

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G + PR           DL  +      ++  E+ WREFY  ++   P      
Sbjct: 234 SPYLKYGCVHPRTLLA-------DLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSARRN 286

Query: 306 P--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                              L+ WK G TGFPI+DA MRQL    WMHNR+RM+ ASFLVK
Sbjct: 287 YDTGFDHLPLRTDEAAYDDLERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMVVASFLVK 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFRIFNP  QG+RFDP G 
Sbjct: 347 DLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGERFDPDGD 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL +VP + +H P     K+ L   YP  +V+HK      L +Y A K
Sbjct: 407 YVRRWVPELADVPGKAVHQPWKL--KDGLPDGYPERMVEHKAEREEALARYEAVK 459


>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 467

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 237/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC  +D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQSLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum
           SL003B-26A1]
 gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 480

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 155/484 (32%), Positives = 226/484 (46%), Gaps = 24/484 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65
           M+  LVW R DLRI DN AL+ A   +   V+ VF+         H + A    +++ SL
Sbjct: 1   MTT-LVWFRQDLRIADNPALFEAA--ARGSVLPVFVLDEGPGDNTHPLGAASRWWLHHSL 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L                D    +        V  + +NR YE + VRRD  L+ 
Sbjct: 58  EALARDL----GRLVLLH----GDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKA 109

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182
            L    +     ++ L   P  +       +KV++P+ +A +   V   L   P   I  
Sbjct: 110 ALIAAGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAA 169

Query: 183 -RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +    +    +             ++  GE  A   L  F +  +  Y   RD P +  
Sbjct: 170 GQAGDRLDDWRLRPTAPDWAAGWRDLWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSH 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP+L  G +SPRQ   R +          +  A  +L E+ WREF  HL+  +P +
Sbjct: 230 VSRLSPHLHFGEVSPRQVVARTRFA-AGRTPGLERDADKFLAEIGWREFSHHLLYHFPRL 288

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                     +   W   S  L  W++G TG+P++DA MR+L   G+MHNR+RM+ ASFL
Sbjct: 289 PERNW-KSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK L +DWR+GE +F   L+D DLA+N  GWQW A +G D+ PYFRIF+P  QG+RFDP 
Sbjct: 348 VKHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPG 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R W PEL  +P  ++HAP             +L   YP PIVDH  A    L  Y 
Sbjct: 408 GAYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALAGYE 467

Query: 476 AAKK 479
           A ++
Sbjct: 468 AVRR 471


>gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
 gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
          Length = 565

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 231/486 (47%), Gaps = 43/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +  FI  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C       LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I    +D   +  PG +     + Y VYTP+ ++ +  L Q       V A  +  
Sbjct: 220 TTQGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 187 PVTPSNIPRFFDY--------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +    FD                 +    M+P GEQ A   LR+F  EK   Y  
Sbjct: 280 GDARKHFEDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRS 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R                        L  L+  +   
Sbjct: 340 KRDFMSSQITSVLSPYFSCGALSARTA---------------PFIEAMKLCGLVITDVSS 384

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                     M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 385 ---------SMNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 556 EKYKKA 561


>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 432

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/479 (32%), Positives = 234/479 (48%), Gaps = 52/479 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           MK      + + W R DLR+ DN  LY A    +  V+ +FI            +  +  
Sbjct: 1   MKK-----LSVFWFRRDLRLEDNTGLYYALQQ-ETDVLPLFIFDRTILDDLEDKTDARVS 54

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI+  +  +++ L +KG          +    E       +  +  ++ NR YE    +R
Sbjct: 55  FIHDQIQNLKEELEKKGSTLLV----KYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKR 110

Query: 120 DKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D+ +EK  + + I   +F D V+  PG ILN + + YKV+TPF +  +    + ++ +L 
Sbjct: 111 DRAIEKLAEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALS 170

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               +      P  +    +  F+           +         +E + YY + R+ PA
Sbjct: 171 YFHWKNLYQTKPEPLISLKEMGFER---------SSISIPSSNPNEEIIKYYDKTRNFPA 221

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+L  +L  G +S RQ   +                 ++LNELIWREFY  ++ + 
Sbjct: 222 ENGTSRLGIHLRFGTISIRQLALKAASLN-----------ETYLNELIWREFYMMILDYN 270

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V   K F P  ++I W  +    +AW +G TG+PI+DA MR+LN  G+MHNR+RMI A
Sbjct: 271 PQVVD-KAFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVA 329

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++F
Sbjct: 330 SFLTKHLLIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKF 389

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D    +I+ W+PE                     +  YP PIVDHK A    L+ Y  A
Sbjct: 390 DKDLKYIKKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429


>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
 gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
          Length = 481

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 243/482 (50%), Gaps = 17/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G    + Q     +    +           +F+N   E    RRD+ + + L+ +
Sbjct: 65  TYQKLGSNLLFIQ----GEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120

Query: 131 VICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183
            I        LL   G I+  + + YKVYTPF K        +      +L  L    + 
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLTQTELE 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               V   ++P   +  ++   P+    GE  A   L  FC   +  Y EQR+ PAI+GT
Sbjct: 181 QAKTVKIIDLPTVKELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLSP L  GV+  R  W    +   +      +    +W  EL WREFY+H + F+P +
Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W+ +  L QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP 
Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +IR WLPEL ++ T+ +           LS  YP PIV+H +       +Y   K+  
Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQTK 477

Query: 482 LL 483
            +
Sbjct: 478 SV 479


>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161]
 gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
 gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
          Length = 467

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G   +  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15]
          Length = 538

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 179/486 (36%), Gaps = 23/486 (4%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
              M+  +VW + DLR  D+  L AA    +  VI +++   + W+    S RQ  FI  
Sbjct: 25  RIHMTT-VVWFKRDLRTRDHAPLVAAASLGE-PVIPLYVIEDDYWQLPDTSGRQWAFIRD 82

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + + L + G      +        + L     +Q + ++F +++   +        
Sbjct: 83  SLDDLDRQLRKAGSQLLVIR----GSVTDALKKLQARQGIDRIFCHQETGGHWTFERDRA 138

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                     +  + +       + +  +         R+ +++                
Sbjct: 139 VIGWCSENQVEFREWNQFGVVRRLSDRDVWDRAWTELMRQPVLEAPTAIPTSD------- 191

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-- 241
            T     +           +       G      +L  F   +   Y      P      
Sbjct: 192 -TLKTDWAADNGQGFEVPDSCPDRQKGGSARGEKLLESFLDRRCVGYQYNISSPNTAVRA 250

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            S+LSP+++ G +S R+ +   K      + L + K    S+ + L W   +   +   P
Sbjct: 251 CSRLSPHIAYGTVSLREIYQEAKATGNHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEP 310

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +                 DS  LQ W++G TG+P++DA+MR L   GW++ R+R +  +
Sbjct: 311 ELEFRAMHREMEALKTGPNDSERLQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMA 370

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
                L + WR    +      D +   +    Q    +G   +   RI+NP +Q ++ D
Sbjct: 371 IASYQLWLHWRDPALHLARLFTDFEPGIHYS--QTQMQSGLTGINALRIYNPVLQSQKLD 428

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYA 476
           P+G FIR W+PEL  VP++ IH P               Y  P+ DH++A          
Sbjct: 429 PEGEFIRRWIPELAGVPSEMIHTPWLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGD 488

Query: 477 AKKQSL 482
            +KQS+
Sbjct: 489 FRKQSV 494


>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 220/484 (45%), Gaps = 23/484 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ V+I  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAK--EGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++  L       + TK+ +N  Y+   + RD  ++++L  +
Sbjct: 65  SLKSLGSRLVLIKTHS---TVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +  L   P  + + + + +  +  F K  +   +       P   I   G V 
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKVE 181

Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                               +   +  G +NA   L +F ++ +  Y ++R       TS
Sbjct: 182 ECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDSTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +   + +      +     +     +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                K  +   +   WN D+ + + W+QG TGFP++DA MR+L   GW+HNR+R+I +S
Sbjct: 302 -FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +FD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A    +  
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIEA 480

Query: 474 YYAA 477
            +  
Sbjct: 481 IFKM 484


>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
 gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
          Length = 477

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 242/480 (50%), Gaps = 17/480 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN AL  A   S AKV+ +F   P    +  ++  +  ++ A L ++ +
Sbjct: 6   LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      Q     + +E L       +V  +++N   E    +RD  +   L+  
Sbjct: 65  NYQKAGSQLLIFQ----GNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQV 120

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183
               ++F D +L  PG +   + + Y VY+PF K   Q    A        + L     +
Sbjct: 121 GAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQK 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L   +    +P   D  F    P   P+GE  +L  L +F +  +  Y   R+ PA  GT
Sbjct: 181 LAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPATDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W   +         + ++G  +W  EL WREFY+H + F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W  D    QAW  G TG+PIIDAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL++DWR GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +IRHWLPEL+ + TQ +              +YP PIV+H+         Y   K ++
Sbjct: 419 ADYIRHWLPELSGLDTQVLLTGQIPRLLCQ-QHDYPEPIVEHRVRQREFKRLYKLVKDKA 477


>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
 gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
          Length = 467

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQGF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
 gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
          Length = 472

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 221/480 (46%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            +S + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDGALRALGSGLVIRS----GNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRD 115

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180
           L+ R I     ++ L   P  +       YKV+TPF +  +  L     + A  R  P+P
Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A   T  +    +     +     +   P GE  A  +L  F    +  Y E RD P   
Sbjct: 176 ASLKTDALDTLQLVPGLQWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRDRPDRV 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSP+L  G ++P +  + L+               +++ +L WR+F  HL+  +P 
Sbjct: 235 GTSQLSPHLHFGEIAPWRIASTLETHRTARNGAEI---DAYIRQLGWRDFAYHLLHHFPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASF
Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
           Q  +I  W+PEL  +  +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRNPIIGLAEGRDAALAAYAKSR 471


>gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 500

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 221/480 (46%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 29  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 87

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 88  ALDGALRALGSGLVIRS----GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 143

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180
           L+ R I     ++ L   P  +       YKV+TPF +  +  L     + A  R  P+P
Sbjct: 144 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A   T  +    +     +     +   P GE  A  +L  F    +  Y E RD P   
Sbjct: 204 ASLKTDALDTLQLVPGLQWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRDRPDRV 262

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  HL+  +P 
Sbjct: 263 GTSQLSPHLHFGEIAPWRIASTLEAHRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPD 319

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASF
Sbjct: 320 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 379

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 380 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 439

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
             T+I  W+PEL  +  +   AP          +  YP  PI+   +     L  Y  ++
Sbjct: 440 HATYITRWVPELGKLAVKERFAPWLHPLALARFAPEYPRNPIIGLAEGRDAALAAYAKSR 499


>gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 426

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 224/428 (52%), Positives = 294/428 (68%), Gaps = 4/428 (0%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE 
Sbjct: 2   PRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEF 61

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           NE +RD  +EK L    IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +   
Sbjct: 62  NERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIP 120

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQ 233
             +P P IR++G ++    P   +YP QA D   FP+ E   +  LR FC +    Y  +
Sbjct: 121 PCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASR 180

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFYRH
Sbjct: 181 RDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRH 238

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           LM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRL
Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT 
Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ 
Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418

Query: 474 YYAAKKQS 481
           Y AA+K +
Sbjct: 419 YEAARKGA 426


>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
          Length = 467

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 167/481 (34%), Positives = 235/481 (48%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR        RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISIRTIWQSLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum IPO1609]
 gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
           [Ralstonia solanacearum IPO1609]
          Length = 522

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178
            L +       F D V+     +LN   + Y V+TP++ A +  +   D         L 
Sbjct: 142 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A    G    +       +    +  +      +    L      ++  Y  +RD PA
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDFATRMDDYHARRDYPA 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++   
Sbjct: 262 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 317

Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 318 PDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 378 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A   
Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARAA 497

Query: 470 TLNQYYAAK 478
           TL +Y  AK
Sbjct: 498 TLERYAPAK 506


>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
          Length = 452

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 161/445 (36%), Positives = 239/445 (53%), Gaps = 15/445 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  +++ SL 
Sbjct: 1   MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLS 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE R
Sbjct: 56  SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183
           L    + + +  ++L  P  I N +   YK++TPF K +  +L                 
Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +         +      +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      K+    +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGK 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD 448
           +I+ W+PEL  VP++YIH P    D
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPD 433


>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
 gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL
           R2-561]
 gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
          Length = 467

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G   +  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
 gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
          Length = 472

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 194/472 (41%), Positives = 273/472 (57%), Gaps = 10/472 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLR DLR  DN     A       V A+F+A P QWR HG +  +  F   +L 
Sbjct: 1   MNT-LLWLRTDLRAHDNP--ALAAAAEAGTVTALFLAAPGQWRLHGDAPTKVDFWLRNLR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + L + GI  +     ++ ++ + L  +C    + ++  N ++ +NE RRD  +  R
Sbjct: 58  ELSRELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAAR 117

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   +  +      L  PG++L    + Y+VYTP+ +A  + L  A LR+LP P  +  
Sbjct: 118 LQALGVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTP 177

Query: 186 GPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            P     +P  F+    P   +  ++P GE  A   L  F    +  Y EQRD P++  T
Sbjct: 178 PPWPADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPAT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+ GVLSP Q            +   K GA +W+NEL+WREFY+HL+A +PS+ 
Sbjct: 238 SCLSPYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLS 297

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           M +P  P T  + W      L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL 
Sbjct: 298 MHQPMKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLS 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q ++FDP G
Sbjct: 358 KNLLIDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            F+R WLPEL ++ ++ IH P            YPL IVD  ++    L  +
Sbjct: 418 VFLREWLPELAHLDSRAIHDPSPMERAQ---AGYPLAIVDLAQSRLRALEAF 466


>gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
 gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
          Length = 470

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 283/473 (59%), Gaps = 13/473 (2%)

Query: 11  LVWLRNDLRITDNKALYA-----ACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYA 63
           L+WLRNDLR  DN AL+      A    D+ V A  +F    +QW+QH  S  +  FI  
Sbjct: 2   LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
               + K L+   I  +  +  NF     +L SYC    +T++  N + E NE +RDK L
Sbjct: 62  HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121

Query: 124 EKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              L+   I  +  +  V++P G +LN +  MYKV+TPF++A +  + Q     L   ++
Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           + +      N          +I   +P+       IL KF ++K+  Y   RDIP+I+GT
Sbjct: 182 KSSAVNKADNQEE----DQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL+ GV+SPR     L  +  DLL+   S  FSWLNE+IWREFYRHL+     +C
Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +    +++ W+ D+ L  AW QG TG+P++DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR+GE+YFM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP+G
Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            FIR ++PELNN+  + IH PH ++  N+L++ +P  IV+HK+A    L  Y 
Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWPA-IVEHKEARLKALAFYK 469


>gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 508

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 145/489 (29%), Positives = 229/489 (46%), Gaps = 24/489 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR+DLR+ DN A++AA    +  ++ +++   E      +      +++ SL ++ +
Sbjct: 25  IVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLHMSLSRLGE 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      + + +D    +     + +NR+Y   E+  D  ++K L  R
Sbjct: 84  SLRGLGSPLVLRR----GKAADVVDDLVREVGAGAVLWNRRYGGAEIAVDTAIKKDLGDR 139

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            +        L + P +++N   + ++VYTPF K        +    A            
Sbjct: 140 GLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPDALEAPRKAPR 199

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +          +      GE   L  L  F   ++  Y  QRD PA   TS+
Sbjct: 200 SDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTSR 259

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  G +SP Q W+R++      +   +  A  +L+EL WREF  HL+   P +   
Sbjct: 260 LSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPDLATR 319

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +            L AW++G TG P++DA MR L   G +HNR+RM+ ASFL+K+
Sbjct: 320 NFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASFLIKN 379

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP +QG++FDP G +
Sbjct: 380 LLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDPSGEY 439

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLPIVDHKKACHHTL 471
           IR ++PEL + P   +H P         S               YP PIVD K++    L
Sbjct: 440 IRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAAYPSPIVDLKESRQRAL 499

Query: 472 NQYYAAKKQ 480
             Y   K +
Sbjct: 500 AAYDEIKDR 508


>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 484

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 151/485 (31%), Positives = 226/485 (46%), Gaps = 17/485 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I    +  +    A    + 
Sbjct: 8   RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDALHEEGEWTPGAASRTWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L  +G            DS + LD    Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175
            +++ L+ R I  +S + ++L  P  +       YKV+TPF +  +  L     V A   
Sbjct: 123 QIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRS 182

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             P+PA   T  +    +    ++     +   P GE  A  +L  F    +  Y E RD
Sbjct: 183 LPPLPAALKTDALDTLQLVSSLNWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRD 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P   GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  +L+
Sbjct: 242 RPDRVGTSQLSPHLHFGEIAPWRIASTLEAH---RTARNCAEIDGYIRQLGWRDFAYYLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P          +        D   L AW++G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 299 HHFPDTTNQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q 
Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQ 473
           ++FDPQ T+I  W+PEL  +  +   AP          +  YP  P++   +     L  
Sbjct: 419 EKFDPQATYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRTPVIGLAEGRDAALAA 478

Query: 474 YYAAK 478
           Y  ++
Sbjct: 479 YAKSR 483


>gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 464

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 236/488 (48%), Gaps = 34/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       V + W R DLR+ DN ALY A    +   I +FI    Q     I      +
Sbjct: 1   MSKK----VAIHWFRQDLRLADNPALYHASQADET--ITIFILDENQ----DIGGASKLW 50

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + +SL+ K     ++      + +E +     + +VT  ++NR Y+   + RD
Sbjct: 51  LHHSLNNLNRSLNDK---LNFYN----GNPLEIIKKLIKENKVTDFYWNRCYDKYSINRD 103

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ LQ + I  +  +  L + P          YKVYTPF K LI+           V
Sbjct: 104 TQIKQFLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAV 163

Query: 180 PAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +  +    + +        P   +Q I   + +GE+ A  +L +F   K+  Y   RD 
Sbjct: 164 FSRLIKLASSDTLDSLKLLEPKLTWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIARDY 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   TS LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + 
Sbjct: 224 MSTDATSTLSPYLHFGEISPNQIFNAV-----QSLDSIGNNEEHFIKELVWRDFSYYQIY 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +YP     K      +   W+ ++ LL+ W++G TG PI+DA MRQL   G+MHNR+RMI
Sbjct: 279 YYPE-LHNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q +
Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +F+    +IR ++PEL  +P + I  P    +         L  NYP PIVD K +    
Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSRDKA 456

Query: 471 LNQYYAAK 478
           L  +   K
Sbjct: 457 LQLHNQIK 464


>gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 220/475 (46%), Gaps = 13/475 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL 
Sbjct: 1   MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            DS+  L +   Q     +F+NR+YE     RD  +++ 
Sbjct: 60  ALDAYLRSRGSSLVLRS----GDSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIR 183
           L+ + I  +S + S+L  P  I     Q YKV+TP+ + ++ +            + A  
Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +                       +  GE  AL  L  F    +  Y EQRD+P   GTS
Sbjct: 176 VDSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SP+L  G ++P +  + L+            G   +L +L WR+F  HL+  +P    
Sbjct: 236 RMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPT 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +         +  L  W++G TG PI+DA +R+L   G+MHNR+RMI AS+L K
Sbjct: 293 ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLCK 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ  
Sbjct: 353 HLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQAR 412

Query: 424 FIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPL-PIVDHKKACHHTLNQYYA 476
           +I  W+PEL  +P +   AP    L     +  YP  P+VD        L  Y  
Sbjct: 413 YISRWVPELAALPVKARFAPWQHPLLLAAHAPGYPRTPLVDLAVGRDAALAAYRQ 467


>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
 gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
          Length = 467

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 163/479 (34%), Positives = 243/479 (50%), Gaps = 21/479 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W+R DLR+ DN+A  AA      +++ +F+  P        S R++ F++A+L 
Sbjct: 1   MTTVVWWVRRDLRLHDNQA-LAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L ++G               + L +   +   T +           RRD+     
Sbjct: 60  SLDAALRRRGSRLIVR----AGRPEQVLPTVVRESGATLVMAEADGSPYARRRDE----A 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V  +  + S L P GSI     + Y+VY+ FR+A  +  + +    LP        
Sbjct: 112 VARSVPLQLVEGSTLRPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSPQDILPA---PPRL 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P  P            A+   F   E  A   L+ F  + +  Y  +R+     G+SQLS
Sbjct: 169 PPVPRLASEPIPESPLAVPERFAPSEDAARQRLQHFLAQGLASYHLRRNALDGSGSSQLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY   G+LS R+ W        +       GA +WL+EL+WREFY+HL+A +P       
Sbjct: 229 PYFRFGLLSVREAWCAAARYLDEPDAAA--GARAWLDELLWREFYQHLLAAWPESARMSM 286

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P    + W   +  L  W++G TGFP++DAAMRQL + GWM NR RMI ASFL K LL
Sbjct: 287 -QPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSKLLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR GE +F  +L+DGDLA+N GGWQW+A TG D+ PYFRIFNP +QG++ DP G+++R
Sbjct: 346 VDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHDPNGSWVR 405

Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL NVP +Y+ AP              +  +YP PIV+++ A    L  + + ++
Sbjct: 406 TWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYPAPIVEYESARARALEWFRSVRQ 464


>gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea]
          Length = 619

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/484 (28%), Positives = 223/484 (46%), Gaps = 28/484 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLTQSLKALGSELTLIKTH---NTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  +S++  +L  P  I     + +  +  + K  +   V++ +   P   I
Sbjct: 116 KEKLVERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLI 175

Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            LT   T                      +   +  G  NA  IL +F ++++  Y +  
Sbjct: 176 PLTAAETVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNS 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
                  TS LSPYL  G +S R+ +   + +      D   + +  A  +L  +  R++
Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMH
Sbjct: 296 SRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ N
Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD  
Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDID 474

Query: 465 KACH 468
            A  
Sbjct: 475 TARE 478


>gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067]
          Length = 471

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 163/476 (34%), Positives = 231/476 (48%), Gaps = 25/476 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  +I +F   PEQ+     S     F ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +       H    F + +  L+    +     K+++NR       +RD+   +  
Sbjct: 58  KQKLDK-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
               I               +   A   YKV+TP+ K   + + +  L        +  T
Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                   +GEQ A + L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E          +G  ++  EL WR+ + +++         +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           R ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + +Y 
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461


>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
 gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
          Length = 519

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 233/479 (48%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 29  SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 88  HGSLAGLDAALARHGGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQQQRDADA 143

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175
            L+  L+ R +     +  L   P  +L  +   Y+V+T + +A  ++      + A  R
Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203

Query: 176 SLPVPAIR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P  +            +  P   D+     D      E  AL  L +F    +  Y
Sbjct: 204 IAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGY 263

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELGWREF 323

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 443 PVAQGQKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVEH 501


>gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 221/490 (45%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L   
Sbjct: 66  SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   +   G  +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182

Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +           +  +     +   +  G +NA  +L +F    +  Y +        
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R+L  
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A    
Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481

Query: 469 -HTLNQYYAA 477
             +++  +  
Sbjct: 482 DDSISTMWQL 491


>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 464

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       + + W R DLR+ DN ALY A    +   I +FI    Q     I +    +
Sbjct: 1   MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLW 50

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  SL  K             + +E +     +  +T  ++NR Y+   + RD
Sbjct: 51  LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176
             +++ LQ   I  +  +  L + P          YKVYTPF      + +        +
Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                         S       + +Q I   + IGE  +  IL +F   KV  Y   RD 
Sbjct: 164 FSYLRKLNNSENLDSLKLLEPKHSWQNIIKQWQIGESASHQILEEFLNNKVKEYKTARDF 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   TS+LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + 
Sbjct: 224 MSTDSTSKLSPYLHFGEISPSQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +YP     K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI
Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q +
Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +F+    +IR ++PEL  +P + I  P    +         L  NYP PIVD KK+    
Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456

Query: 471 LNQYYAAK 478
           L  +   K
Sbjct: 457 LQLHNQIK 464


>gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 480

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 147/495 (29%), Positives = 211/495 (42%), Gaps = 42/495 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR++D  +L AA   +++  +AVF+      R     A ++ F+   L  
Sbjct: 3   SPAIVWFRRDLRLSDLPSLSAAADRAESA-LAVFVLDDALVR--PSGAPRTTFLAGCLEA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L   G            D ++ +        V  +  +  +      RD+ +E  L
Sbjct: 60  LDADL---GGRLLV----VSGDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V          + PG +   A   Y+V+TPF++A + +   +   + P     L   
Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHSPALTGPDTVDWLDPD 172

Query: 188 VTPS-------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                             +         A+               R     ++  Y + R
Sbjct: 173 SILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTSELDRYADDR 232

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P +  TS+LSPYL  G L PR   + L+    D       GA +  +EL WR+FY  +
Sbjct: 233 NRPDLDATSRLSPYLKFGCLHPRTILHDLRARTDD-------GATTLRSELAWRDFYADV 285

Query: 295 MAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +   P              E            AW +G TG+PI+DA MRQL   GWMHNR
Sbjct: 286 LFHRPETARTGVDAKFDQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQLLAEGWMHNR 345

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDL + W  G  YFM+ L+DGDLASN  GWQW A  G D+ PYFR+FNP 
Sbjct: 346 VRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPV 405

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----------WLDKNDLSLNYPLPIVD 462
            QG+RFDP G ++R W+PEL  +  + +H P              D  D    YP PIVD
Sbjct: 406 SQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDGDRGYPPPIVD 465

Query: 463 HKKACHHTLNQYYAA 477
           H +     L +Y   
Sbjct: 466 HAEERVVALARYRDL 480


>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
 gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
          Length = 502

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 238/483 (49%), Gaps = 23/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+ DN ALYAA  N+   VI V++  P +          S +++ SL  +  
Sbjct: 28  LVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLL-PNRNDDWFPGGAASWWLHHSLDALTT 85

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           +L ++              +   +       +   +F+NR YE  +  RD+    +L Q 
Sbjct: 86  NLHKRHHQLILRS----GSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADKLAQA 141

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIRL 184
               +SF  S+L+ P ++       Y+V+TPF KA          + A            
Sbjct: 142 GYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPESLKTPDQWPD 201

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +    D+  +  +   P GE  A    +KF  + +  Y  +RD+P+  GTS+
Sbjct: 202 SEELADWKLLPTLDWADEFPERWKP-GEDAAHAAWQKFLDDNIAEYGTERDVPSHHGTSR 260

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSP+L  G +SPRQ +    E+           +     +L+E+ WREF  H++  +P  
Sbjct: 261 LSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSEIGWREFGYHVLYHFPHT 320

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               P         W      L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI ASFL
Sbjct: 321 PE-NPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNRVRMIVASFL 379

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL + W  G ++F   L+D DLA+N  GWQWA+  G D+ PYFR+FNPT Q ++FDP+
Sbjct: 380 TKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPTRQSEKFDPK 439

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R W PEL ++P +Y+H P    +         L  +YP PIVDH +     L ++ 
Sbjct: 440 GNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIVDHAEQRDAALAEWE 499

Query: 476 AAK 478
             K
Sbjct: 500 KVK 502


>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 464

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       + + W R DLR+ DN ALY A    +   I +FI    Q     I +    +
Sbjct: 1   MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLW 50

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  SL  K             + +E +     +  +T  ++NR Y+   + RD
Sbjct: 51  LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176
             +++ LQ   I  +  +  L + P          YKVYTPF      + +        +
Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                         S       + +Q I   + IGE  +  IL +F   KV  Y   RD 
Sbjct: 164 FSYLRKLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   TS+LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + 
Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +YP     K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI
Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q +
Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +F+    +IR ++PEL  +P + I  P    +         L  NYP PIVD KK+    
Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDRA 456

Query: 471 LNQYYAAK 478
           L  +   K
Sbjct: 457 LQLHNQIK 464


>gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
 gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
          Length = 481

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 164/482 (34%), Positives = 235/482 (48%), Gaps = 17/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        Q+ I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G    + Q     +    +           +F+N   E    RRD+ + + L+ +
Sbjct: 65  TYQKLGSNLLFIQ----GEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120

Query: 131 VICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPVPAI 182
            I        LL   G I+  + + YKVYTPF K        +   +             
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +                       +   GE  A   L  FC   +  Y EQR+ PAI+GT
Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLSP L  GV+  R  W    +   +      +    +W  EL WREFY+H + F+P +
Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W+ +  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP 
Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +IR WLPEL ++ T+ +           LS  YP PIV+H +       +Y   K+  
Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQTK 477

Query: 482 LL 483
            +
Sbjct: 478 SV 479


>gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 221/490 (45%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L   
Sbjct: 66  SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   +   G  +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182

Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +           +  +     +   +  G +NA  +L +F    +  Y +        
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R+L  
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A    
Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481

Query: 469 -HTLNQYYAA 477
             +++  +  
Sbjct: 482 DDSISTMWQL 491


>gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
 gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
          Length = 429

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 213/473 (45%), Gaps = 51/473 (10%)

Query: 7   MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS  + + W R DLRI DN AL  A  + +  V+ VFI       +      +  FI+ +
Sbjct: 1   MSDKISVFWFRRDLRIEDNTALCNALKSGN-PVLPVFIFDENILNELDADDARVTFIHKT 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +  +L +          +                 V ++F+N+ YE     RD+ + 
Sbjct: 60  ISAINLTLKEYNSGVLCLHTT----PELAWKKIVSTYNVERVFFNKDYEPYARERDQKIT 115

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L  + I  KS  DSV+     +L +    Y VYTP++   +                 
Sbjct: 116 SFLNDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFTP------------ 163

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +              +  +G   +   +  +  E +  Y E+RD P+   T+
Sbjct: 164 DLIEDKKCDFKGKLLEFNVDFPSLENLGFSASNITVEPYNLEHLDIYAEKRDFPSDDITT 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L P+L  G +S R+    L                 +L+EL+WREF+  ++  +P V  
Sbjct: 224 YLGPHLRFGTVSVRKLIRGLDGLES-----------VFLSELVWREFFTQILFHFPKVVT 272

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RMITA FL K
Sbjct: 273 QN-FRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCK 331

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DW+ GE YF  +LLD +LASNNG WQWAA TG D+ PYFRIFNP  Q K+FD    
Sbjct: 332 HLLIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFK 391

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +++HW+PEL+                     NYP P+V+HK A    L  Y  
Sbjct: 392 YVKHWIPELD-------------------GFNYPQPMVEHKAARERALKVYKE 425


>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
 gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
          Length = 476

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 220/481 (45%), Gaps = 14/481 (2%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKA    SV LVW R DLR+ DN AL AA   +  +V+ V+I  P +  +    A    +
Sbjct: 1   MKAMHV-SVALVWFRRDLRLQDNPALQAALE-AGHEVVPVYIHAPHEEGEWVPGAASDAW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            + SL  +   L  +G            DS+  L +   Q     +++NR+YE     RD
Sbjct: 59  RHRSLAALDADLRSRGSSLVLRH----GDSLATLQALVEQIGAEAVYWNRKYEPATQPRD 114

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSL 177
             +++ L+   I  +S + S+L  P  I     Q YKV+TP+ + ++ +           
Sbjct: 115 AEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAAPK 174

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            + A +  G                     +  GE  AL  L  F    +  Y EQRD+P
Sbjct: 175 ALTAHKADGLALDELRLAPTLDWDSGFWQHWRPGEAGALEALSVFEDGALRGYREQRDLP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              GTS++SP+L  G ++P +  + L+            G   +L +L WR+F  HL+  
Sbjct: 235 DRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHH 291

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P          +            L  W++G TG PI+DA +R+L   G+MHNR+RMI 
Sbjct: 292 FPKTPTDNLNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 351

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 352 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 411

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKACHHTLNQYY 475
           FDPQ  +I  W+PEL  +P +   AP          +  YP  P+VD        L  Y 
Sbjct: 412 FDPQARYISRWVPELAALPVKARFAPWQHPQLLAAHAPGYPRTPLVDLAVGRDAALQAYR 471

Query: 476 A 476
            
Sbjct: 472 Q 472


>gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
 gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
          Length = 522

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 160/488 (32%), Positives = 232/488 (47%), Gaps = 29/488 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178
            L +       F D V+     +LN   + Y V+TP++ A +  +   D         L 
Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A    G    +       +    +  +      +    L      ++  Y  +RD PA
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAKALLDDFATRMDDYHARRDYPA 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++   
Sbjct: 262 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 317

Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W +         AW+   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 318 PDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 378 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A   
Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPQPIVEHAAARAA 497

Query: 470 TLNQYYAA 477
           TL +Y  A
Sbjct: 498 TLERYAPA 505


>gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171]
          Length = 471

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 163/476 (34%), Positives = 231/476 (48%), Gaps = 25/476 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  +I +F   PEQ+     S     F ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +       H    F + +  L+    +     K+++NR       +RD+   +  
Sbjct: 58  KQKLDK-----IAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
               I               +   A   YKV+TP+ K   + + +  L        +  T
Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                   +GEQ A + L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E          +G  ++  EL WR+ + +++         +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           R ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + +Y 
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461


>gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
 gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
          Length = 469

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 173/483 (35%), Positives = 243/483 (50%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +K L  +GI         + D +   +    Q    T +++N         RD+   +  
Sbjct: 59  RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         L     I+N + Q YKV+TP+ +       +  ++        L  
Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +     +  +    +       A   L +F ++++  Y   RD PA  GTS+LS
Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP     +P
Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL
Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+
Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK++
Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AKI 468


>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
 gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
          Length = 505

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 247/497 (49%), Gaps = 23/497 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYLDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLAALDAALARHGGRLLLLR----GDAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174
             L+  L+ R    +S + S+L  P  ++  A   ++++T + +A+ ++      +    
Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRDRTVAAPLPEPE 175

Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           R    P       R     T +  P   D+     D      E  A   L  F    +  
Sbjct: 176 RIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFLVK LL+DWR+GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L+L+YP PIVDH
Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIVDH 474

Query: 464 KKACHHTLNQYYAAKKQ 480
             A    L+      K+
Sbjct: 475 DGARRRALDALATLPKR 491


>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
 gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
 gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           AU 1054]
 gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           HI2424]
          Length = 519

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 230/479 (48%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 29  SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++        +     D+   ++          +++NR+Y   +   D 
Sbjct: 88  HGSLAGLDAALARHDGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 143

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175
            L+  L+ R +     +  L   P  +L  +   Y+V+T + +A  ++      + A  R
Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203

Query: 176 SLPVPAIR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P  +            +  P   D+     D      E  AL  L  F    +  Y
Sbjct: 204 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 263

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 323

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           P  QG++ DP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 443 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 501


>gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 135/497 (27%), Positives = 225/497 (45%), Gaps = 32/497 (6%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+     +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MTTDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G    + +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTFIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  ++ + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PITAAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH---HTLNQYYAA 477
           + A       +++   A
Sbjct: 475 ETARELLARAISRTREA 491


>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
 gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
          Length = 476

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 157/484 (32%), Positives = 245/484 (50%), Gaps = 19/484 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+ + + W R DLR++DN  L  A   S +K++ +F        +  I+  + +++   L
Sbjct: 1   MTNIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +QKS  + G      Q     +  + +        V  +F+N   E     RDK +++
Sbjct: 60  QHLQKSYQKLGSQLLIFQ----GEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKE 115

Query: 126 RLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---- 179
            L+ + I            P   +       YKVYTPF ++ ++      + S+      
Sbjct: 116 ALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESL 175

Query: 180 --PAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDI 236
               I     +   ++P   D  +    P+    GE  A   L  F    +Y Y EQR++
Sbjct: 176 SDEEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRNL 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           PAI  TS+LSP    G++  R+ W   ++        + +    +W  E+ WREFY+H +
Sbjct: 236 PAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCL 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F+P +  G P+    ++  W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RM
Sbjct: 296 YFFPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 355 IVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +++DP G +IR W+PE++++ T+ +            S  YP PIVDHK+       +Y 
Sbjct: 414 QKYDPDGEYIRLWVPEISSLDTECLVT-GKIPPLEAHSCGYPQPIVDHKQQQREFKERYK 472

Query: 476 AAKK 479
             K 
Sbjct: 473 RIKN 476


>gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group]
          Length = 651

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 223/490 (45%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L   
Sbjct: 66  SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  I + +   +  +  + +  ++  + A     P   + + G  +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182

Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +           +  +     +   +  G +NA  +L +F    +  Y +        
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R+L  
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A    
Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481

Query: 469 -HTLNQYYAA 477
             +++  +  
Sbjct: 482 DDSISTMWQL 491


>gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S]
          Length = 467

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 233/480 (48%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G   +  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 EYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462


>gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
 gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
          Length = 591

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 163/486 (33%), Positives = 237/486 (48%), Gaps = 47/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN++L+ A     N D  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAI 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L ++ I           D  + +   C Q    ++F N +YE++E+RR+  + +  
Sbjct: 160 LKSDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLC 219

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  +I  + DD+ ++ PG +     + Y VYTP+ ++ +  L++       V A     
Sbjct: 220 ARQGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPTRNA 279

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +    F                  Q    M+P GE  A   L++F  ++   Y E
Sbjct: 280 GDARKHFEELFHSQVPEAPTYMQLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYHE 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD  + Q TS LSPY S G LS R      +E                           
Sbjct: 340 NRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEAN------------------------- 374

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                +P +CM K   P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 375 ---VHWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHNR 431

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR+GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 432 TRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 491

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL N+    IH P+    +     N YP PIV+H ++    L
Sbjct: 492 RQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKAL 551

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 552 ERYKKA 557


>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
 gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
          Length = 478

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 169/483 (34%), Positives = 234/483 (48%), Gaps = 23/483 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW+R D RI DN AL AA  NSD+ V+ VFI  PEQ      S  QS F +AS   
Sbjct: 3   KVSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETT-ASLNQSAF-FASAKA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            Q +L+ + I     + +      E L +   +       ++ +    +  +      + 
Sbjct: 60  FQANLANENIHLLVLKGTPESQ-FEKLTAALPEISDLYFNFDERGYGRQRDQQVAHHCQT 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   ++ D  L     I       Y+++TP+ K  I       +++           
Sbjct: 119 TLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQGKQMA 178

Query: 188 VTPSNIPRFFDYPFQAIDPMF------PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                           I+          +GE  AL  L+ F +  +  Y  QRD+P +  
Sbjct: 179 NIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLPFLDA 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS YL  G ++ R  +  +  E          G  +++ EL WR++Y  + A  P  
Sbjct: 239 TSHLSRYLRTGEIAIRTIYQAVINEPESE------GQQTFIKELAWRDYYNMIYAMNPQQ 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P  +KI W  + +    W+ G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 293 NT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR GE+YF  QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FDP 
Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FI+ ++PEL+ +    IH P    D         L  +YP P+V HK+A    +  Y 
Sbjct: 412 GKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYE 471

Query: 476 AAK 478
            +K
Sbjct: 472 QSK 474


>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
 gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
          Length = 479

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 166/487 (34%), Positives = 238/487 (48%), Gaps = 19/487 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS + L W R DLRI DN  L AA   S +KV+ VF   P    +  ++  +  ++  SL
Sbjct: 1   MSDLVLFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q+   Q G            D ++ +           +F+N   E     RD+ +  
Sbjct: 60  QELQQRYVQAGSQLLILH----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILD 115

Query: 126 RLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            L+ + I       D +L  P  I + +   Y VYTPF K          + +L      
Sbjct: 116 ILKDKGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGL 175

Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                  +        P       F   D +   GE  A   L +F  + +  Y EQR+ 
Sbjct: 176 TESEQELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNF 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           PA+ GTSQLS  L  GV+  R  W   L+        +  +   +W  EL WREFY+H M
Sbjct: 236 PAVDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAM 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +  G  +    +   W  +    QAW++G TG+PI+DAAMRQ+N  GWMHNR RM
Sbjct: 296 YNFPELADG-AYRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRM 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 355 IVASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++FDP   +IR W+PEL ++ T+Y+            ++ Y  PIVDH+K       +Y 
Sbjct: 414 QKFDPDAEYIRRWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQ 472

Query: 476 AAKKQSL 482
             K  SL
Sbjct: 473 QQKATSL 479


>gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 217/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPV 179
           +++L    I     +  L   P  I     + +  ++ + K  +   +++         +
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175

Query: 180 PAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P       V   +I                +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PISTAAEAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   +    A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
           Manfredo]
 gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           str. Manfredo]
          Length = 469

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 172/483 (35%), Positives = 241/483 (49%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +K L  +GI         + D +   +    Q    T +++N         RD+   +  
Sbjct: 59  RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         L     I+N + Q YKV+TP+ +       +  ++        L  
Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +        +    +       A   L +F ++++  Y   RD PA  GTS+LS
Sbjct: 175 ETPDDVLRTVESIKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP     +P
Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL
Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  Q KRFDP+G FI+
Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK++
Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AKI 468


>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
 gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
          Length = 519

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 181/494 (36%), Gaps = 28/494 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK T   ++++VW + DLR  D+  L  A    +  ++ +++  P+ W+    S +  HF
Sbjct: 1   MKRTLD-AINIVWFKRDLRTNDHAPLLNASQQ-NTPILPIYVVEPDYWKTESSSRKHWHF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           IY  L+ +   L+  G            D ++          +  ++ + +         
Sbjct: 59  IYDCLVDLNNELNDLGQPLIVQT----GDVVDIFIQISEIFDIKNIYSHEETGNMWTYER 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                        K+       P   ++              K + + +           
Sbjct: 115 DKRV----QVWCKKNAIGQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPD----YI 166

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                   +         +    I  +   G   A+  L+ F  E+   Y+     P   
Sbjct: 167 NPIKKNVYSTIPNKDDELFGTPIIGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKS 226

Query: 241 --GTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREFYRHL 294
               S+LS +L+ G LS R+    +K+       D          ++ + L WR  +   
Sbjct: 227 EKYCSRLSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQK 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P++        +    + + D +   AW +G TG+P +DA MR L + GW+  R+R
Sbjct: 287 IESQPNIETHCMHSAFESLRKIDPDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMR 346

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   R++NP  Q
Sbjct: 347 AMLVSFASYQLWIDWRLSGNYLAKLFTDFEPGIHFS--QLQMQSGVTGINAMRVYNPIKQ 404

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACH 468
               D  G FI+ W+PEL ++P ++IH P  + +         +  +YP PIVDH+    
Sbjct: 405 SIEHDINGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEAR 464

Query: 469 HTLNQYYAAKKQSL 482
               +    +K  L
Sbjct: 465 IAKQKISNVRKNEL 478


>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
 gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
          Length = 473

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 162/485 (33%), Positives = 248/485 (51%), Gaps = 28/485 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A     ++ +++ VF    +Q+     S     + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLPDAPS---HDYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123
           +    +++ ++ +       +      E  D         ++L++N        +RD  +
Sbjct: 58  VAHFIEAVKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGYGRKRDLYI 113

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ ++ + +     +      P  +       YK +TP+ K  IQ       +       
Sbjct: 114 KELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEK 173

Query: 183 RLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  P               +  D    +GE  A   L+ F ++++  Y + RD+P+
Sbjct: 174 AAHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPS 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I+GTS+LSP+LS G +S R+ W   +       + P +G  ++L EL WR+ + H++ F 
Sbjct: 234 IKGTSRLSPFLSFGQISIRKVWAACQ------GMPPSTGKATFLKELAWRD-FYHMIYFT 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     ++W KD      W+ G TG+PIIDAAMRQLN  GWMHNRLRMI A
Sbjct: 287 HPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+F
Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D +GT+I+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH +A    L+
Sbjct: 407 DKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALD 466

Query: 473 QYYAA 477
            Y   
Sbjct: 467 LYSKI 471


>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
 gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
          Length = 465

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 162/476 (34%), Positives = 244/476 (51%), Gaps = 23/476 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQK 70
           +W R DLR+ DN AL+ A   SD  V  VFI              ++  FI+ +L +++ 
Sbjct: 1   MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL+               D I  +     +     LF+N+ YE    +RD  + + +Q  
Sbjct: 60  SLNSLSSDITVIH----GDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQS 115

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
                 F D+VL     IL+ A + Y V++P++   +  L Q  +        + +    
Sbjct: 116 SADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAKI 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +          +    +  +      +    L    ++++  Y  +RD P  +G S LS
Sbjct: 176 KIEKLLSLDSLGFTKTNLSKLAIPTGSSGGRSLLLDFEKRIDQYKLKRDYPGKKGVSYLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +   G +S R+       + +  + K   G+  WLNELIWR+FY  +++ +P +  GK 
Sbjct: 236 VHNRFGTISIRE-------QALIAINKQSEGSLVWLNELIWRDFYFQILSNFPHINDGKS 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P   ++ +  +    +AWK G TGFPIIDAAM QLN  G+MHNRLRMI ASFLVKDLL
Sbjct: 289 FKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLRMIVASFLVKDLL 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q ++FDP+G FI+
Sbjct: 349 IDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQSEKFDPEGLFIK 408

Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
            +LP+L  +  + IH PH + +K+       L  +YP PI+DH       L+ Y A
Sbjct: 409 KYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQKALSMYQA 464


>gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
 gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           SSI-1]
          Length = 469

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 173/483 (35%), Positives = 243/483 (50%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNNEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +K L  +GI         + D +   +    Q    T +++N         RD+   +  
Sbjct: 59  RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         L     I+N + Q YKV+TP+ +       +  ++        L  
Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +     +  +    +       A   L +F ++++  Y   RD PA  GTS+LS
Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP     +P
Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL
Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+
Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK++
Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AKI 468


>gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
 gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
          Length = 486

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 219/481 (45%), Gaps = 16/481 (3%)

Query: 7   MSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M + L+     DLR+ +N AL AA       ++ +FI      R     A +  +++ SL
Sbjct: 1   MPITLLLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   L ++G            D  E L        V  L +N     +E R    +  
Sbjct: 60  AALDAELQRRGSRLILRVAE---DPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAP 116

Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPV 179
            L+ R I         L     +   +  +Y+V+TPF KAL Q  +         R    
Sbjct: 117 VLRRRSIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYIPPAPFLPPARIPAP 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +   +  +    +    D+  + I   +  GE  A   LR F    + +Y   RD    
Sbjct: 177 SSWPDSDTLESLALLPRPDWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQ 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + TS+LSPYL+ G +SP   W  + E     +        ++  +L WREF  +L+  +P
Sbjct: 237 EATSKLSPYLANGEISPHLLWRVVGEAQRAGVSSK--AVEAFRRQLAWREFGYYLLYHFP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P  P      W  ++  L+AW+ G TG P+IDAAMRQL   GWMHNR R++ AS
Sbjct: 295 E-TTHRPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L K+L + W  G E+F   L+D DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FD
Sbjct: 354 LLTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFD 413

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAA 477
           P+G +IR WLPEL  +P   IHAP       ++   + YP PIV    +    L  Y   
Sbjct: 414 PEGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALYENW 473

Query: 478 K 478
           K
Sbjct: 474 K 474


>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
          Length = 489

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 150/493 (30%), Positives = 222/493 (45%), Gaps = 22/493 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52
           M A     + L W R DLR TDN+ L AA          +    V AVF    E      
Sbjct: 1   MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--H 58

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            +  +  F+  +L  +++     G            D    L +       T++ +N  Y
Sbjct: 59  AAPPRVAFMLDALAALRERYRDLGSDLIVRH----GDPAAVLPAVANDLDATRVVWNHDY 114

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKAL---IQN 168
                 RD  +   L    +  +     +   PG I  +A   Y VYT F +      +N
Sbjct: 115 SGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKN 174

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
               +     + A       +P    +   +                  +        +Y
Sbjct: 175 PPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIY 234

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIW 287
            Y ++RD P  + TS+LSP+L  G +  R  +   +    D      +    +++ +L W
Sbjct: 235 RYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAW 294

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFY  ++ F     + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL    
Sbjct: 295 REFYAQVLYFN-QNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEA 353

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNR+RMI A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYFR
Sbjct: 354 YMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFR 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKK 465
           +FNP  QG+R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH +
Sbjct: 414 VFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQ 473

Query: 466 ACHHTLNQYYAAK 478
                +  +  A+
Sbjct: 474 RREDAIAMFERAR 486


>gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 515

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 112/487 (22%), Positives = 188/487 (38%), Gaps = 36/487 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+VW + DLR+ D+  L AA       V+ +++  P  W Q  +S R   F+  +L  +
Sbjct: 1   MHVVWFKKDLRVWDHAPLVAASAA--GAVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---LLEK 125
            +SL++ G     +      D    L     +  +T L+ + +                 
Sbjct: 59  DESLTKLGQPLVIY----AGDMPSVLAGIHQKYGITALYSHEETGNGWTYARDLAVQEWC 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +  H    +     V  P  S    A +  K+          +L    ++ +P+P+    
Sbjct: 115 KDHHCPWHEFAQYGVHRPLRSRRGWAGKWDKMMQADVVPAPDHLSSVGIKGVPLPSASAL 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243
           G V                +     G   A+ +L+ F   +   Y  +   P       S
Sbjct: 175 GLVD------------DECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVTAADSCS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L+ G +S R+ +   +   + +         +W N L   E   H    +     
Sbjct: 223 RLSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCHFMQKLE 282

Query: 304 GKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +P I +       +      A        W +G TG+P++DA MR L   GW+  R+R 
Sbjct: 283 DEPAIEFRPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWLTFRMRA 342

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +T SF    L +DWR    +     +D +   +    Q    +G   +   RI+NP  Q 
Sbjct: 343 MTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYS--QCQMQSGITGINTIRIYNPIKQS 400

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +  DPQG FIR W+PEL ++    IH P    D+     +YP PIVD K A      Q +
Sbjct: 401 QDQDPQGIFIRRWVPELRHISDNLIHTPWIRPDQA---PDYPAPIVDEKIARKSASQQMH 457

Query: 476 AAKKQSL 482
             +K S+
Sbjct: 458 DIRKSSM 464


>gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 499

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/482 (23%), Positives = 201/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I   E W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   +   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++            + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + D            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ GV+S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P         SL+YP P +D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3
           [Canis familiaris]
          Length = 613

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
 gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
          Length = 505

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 141/492 (28%), Positives = 220/492 (44%), Gaps = 31/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+D R+ DN AL  A       V+ V++          +   Q  +++ SL ++  
Sbjct: 14  VVWFRDDQRLADNPALTHALDTGH-PVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDD 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      + +      E +  +        + +NR+Y   +   D  +++ L  R
Sbjct: 73  ALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLIDR 128

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  S  +  L   P ++       ++V++ + +A  ++     +       IR      
Sbjct: 129 GIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPA 188

Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +                      +   +  GEQ A   L  F +  +  Y   RD PA 
Sbjct: 189 HATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAA 248

Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + TS+LSPYL  G +S RQ W               V  +         +L+E+ WREF 
Sbjct: 249 RATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKFLSEIGWREFS 308

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            HL+  +        F    + + W  D+  L+ W+ G TG+P++DA MR+L   GWMHN
Sbjct: 309 YHLLYHFA-PLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHN 367

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW + +G D+ PYFRIFNP
Sbjct: 368 RVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNP 427

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465
            +Q ++FDP G + R W+PEL  +    +HAP +            L  +YP+PIVDH+ 
Sbjct: 428 VLQAQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQC 487

Query: 466 ACHHTLNQYYAA 477
           A    L      
Sbjct: 488 ARARALESVKRL 499


>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
 gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
          Length = 480

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 171/490 (34%), Positives = 245/490 (50%), Gaps = 25/490 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + M V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 7   RKGSVM-VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120
             S+L  +K L  +GI         + D +   +    Q    T +++N         RD
Sbjct: 64  T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +   +  +   I         L     I+N + Q YKV+TP+ +       +  ++    
Sbjct: 119 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 178

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L        +     +  +    +       A   L +F ++++  Y   RD PA 
Sbjct: 179 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP
Sbjct: 237 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI AS
Sbjct: 291 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL DWR+GE++F  QL+D D ASN GGWQWAASTG D+VPYFR+FNP  Q KRFD
Sbjct: 350 FLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +
Sbjct: 410 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAK 469

Query: 474 YYAAKKQSLL 483
           Y  AK+++ +
Sbjct: 470 YEWAKEKAKI 479


>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
 gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
           pseudofirmus OF4]
          Length = 479

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 165/477 (34%), Positives = 236/477 (49%), Gaps = 25/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R D R+ D+ AL  A         K +A F   P   +   +      + + +++Q 
Sbjct: 10  VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L   G        +      + L ++     +  ++ N     +   RD+  E  L 
Sbjct: 67  KQMLKTNGGDLYIITGTIEGALSKLLQAF---PEIDAVYANDDRVGDGRLRDEAAEHFLA 123

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     +      P  +L      YKV+TP+ KA  +   +          +     
Sbjct: 124 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 183

Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            T  +      +     +       IGE++A+  L+ F K+++  Y   RD P+I GTS+
Sbjct: 184 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  G +S R  +  +     D        A ++L EL WR+FYR +  + P  C  
Sbjct: 244 LSPYIKTGAVSSRSIYYHILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKD 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KD
Sbjct: 298 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+
Sbjct: 358 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR ++PELN+VP  YIH P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 418 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 474


>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
 gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
          Length = 473

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 165/485 (34%), Positives = 245/485 (50%), Gaps = 28/485 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A      +  ++ VF    +Q+     S     + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPS---HDYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123
           +    K+  ++ +       +      E  D         ++L++N        +RD  +
Sbjct: 58  VAHFIKAAKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGFGRKRDLYI 113

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ ++ + I     +      P  +       YK +TP+ K  IQ       +       
Sbjct: 114 KELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEK 173

Query: 183 RLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            +     P               +  D    +GE  A   L+ F ++++  Y + RDIP+
Sbjct: 174 SVHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPS 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I+GTS+LSP+LS G +S R+ W   +       +   +G  ++L EL WR+ + H++ F 
Sbjct: 234 IKGTSRLSPFLSFGQISIRKVWAACQ------GMPSSTGKATFLKELAWRD-FYHMIYFS 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     ++W K+   L  W+ G TG+PIIDAAMRQLN  GWMHNRLRMI A
Sbjct: 287 HPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+F
Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D  GTFI+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH +A    L+
Sbjct: 407 DKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALD 466

Query: 473 QYYAA 477
            Y   
Sbjct: 467 LYSKI 471


>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 462

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 156/475 (32%), Positives = 231/475 (48%), Gaps = 21/475 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN+ L  A      + + +F+           +  +  F+  +L  +
Sbjct: 1   MRIHWHRRDLRVADNRGLADA----PGRPVGLFVFDEAVLD--HAAPPRVAFLLDALSSL 54

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +   +G      +     D    L +      V  + +NR Y      RD  +   L 
Sbjct: 55  RAAYRDRGSELFIRR----GDPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADVLD 110

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  + F D++  PPG+I  +A   Y VY+ F K                P   L   
Sbjct: 111 EVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKWRDREKDDP-----YPVPALADA 165

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              + +P   D  F       P  G   A   L  F ++ +Y Y E RD PA + TS+LS
Sbjct: 166 TDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R    +++E          +  A  + ++L WREFY H++AF P V    
Sbjct: 226 ADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVTEN 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I+W  D  LL AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDL
Sbjct: 286 -YKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTKDL 344

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G  +F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 345 LIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL+ V    IH+ H      + + +  YP P+VDH +     L+ +  A+
Sbjct: 405 REYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459


>gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 674

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 223/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 492 SQMWQL 497


>gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 482

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 179/479 (37%), Positives = 266/479 (55%), Gaps = 14/479 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  LVWLR DLR + N A+  A  + ++ V AV+  T +QW ++ ++  +   IY  L+
Sbjct: 1   MS-ALVWLRTDLRSSWNSAIDYAVASHES-VSAVYFVTQKQWSKYNMANSKIALIYQRLV 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L ++ I  Q      ++   E L   C++  VT ++ N +YE +E +RD  ++  
Sbjct: 59  SLQEELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNS 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +  +      L   + + +     YKV+TP+ K  ++  ++         +   T
Sbjct: 119 LNKMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQLPGVPEKCSANDT 178

Query: 186 GPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           G     +  ++ +      +         P +P         +  F  E    Y + RDI
Sbjct: 179 GLKHSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNRDI 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+I+GTS++SPYLSIG LSPRQC   + +E+ +  + P+ GA++W+ E+ WR+FYR++M 
Sbjct: 239 PSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYVMF 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V  G PF    +  +W  +     AWK G TG+PI+DAAM  L   GWMHNRLRMI
Sbjct: 299 HFPHVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLRMI 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASF  K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +
Sbjct: 359 VASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSE 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           RFDPQG FI+ WLP+L ++  + +H P    D   L   Y LPIV+HK +   T  Q+ 
Sbjct: 419 RFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQRLG--YALPIVEHKASVARTKAQFK 475


>gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T     +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         +
Sbjct: 1   MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD
Sbjct: 54  MKQSLAHLSQSLKALGSDLTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P 
Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
             + +T            +   +          +   +  G  NA  +L +F ++++  Y
Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
            +         TS LSPYL  G +S R  +   + +      D   + +  A  +L  + 
Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            RE+ R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   
Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWAT 349

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     
Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PI
Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469

Query: 461 VDHKKACH 468
           VD   A  
Sbjct: 470 VDIDTARE 477


>gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
 gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
          Length = 500

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 23/496 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      +
Sbjct: 1   MSAKSSVAPAIVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +L  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGALAALDAALARHGGRLLLLR----GDAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174
             L+  L+ R    +S + S+L  P  ++  A   ++V+T + +A+ ++      +    
Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175

Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           R    P       R     T +  P   D+     D      E  A   L  F  E +  
Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH
Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474

Query: 464 KKACHHTLNQYYAAKK 479
             A    L+      K
Sbjct: 475 DGARRRALDALATLPK 490


>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
 gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
          Length = 518

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 232/479 (48%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 28  PAKSSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGDGAGRALGGAARWWL 86

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 87  HGSLAGLDAALARHGGRLLLLR----GDAQREIERVVHDTGAEAVYWNRRYAQPQRDADA 142

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175
            L+  L+ R +     +  L   P  +L  +   Y+V+T + +A  ++      +    R
Sbjct: 143 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAVPLPEPER 202

Query: 176 SLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P  +       +       P   D+     D      E  A   L  F    +  Y
Sbjct: 203 IAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGY 262

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD+P    TS+LSP+L  G LSPRQ W+ ++           + A  +L+EL WREF
Sbjct: 263 ADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELGWREF 322

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 323 SYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 381

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 382 NRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 441

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 442 PVAQGQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLVEH 500


>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
 gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
          Length = 467

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++N        +RD+  +   
Sbjct: 57  KQEVDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPENIWKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G   +  EL WR+ + +++         +P
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana]
 gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana]
 gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana]
 gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana]
 gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa]
 gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 24/487 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +  +   ++  L         T++ +N  Y+   + RD  ++++L
Sbjct: 62  LGQSLKSLGAELVLIKTHS---TVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     +  L   P  I +     +  +  +    +   ++      P   +   G
Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAG 178

Query: 187 PVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   +                 +   +  G  NA   L +F ++ +  YVE R +    
Sbjct: 179 TVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESR-LKVGT 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ +  ++ +      +  +  K     +L  +  RE+ R+L  
Sbjct: 238 STSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCF 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +   +   WN +    +AW+QG TG+P++DA MR+L   GW+HN++R+I
Sbjct: 298 NFP-FTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 356

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ + +  D+    R+ NP IQG 
Sbjct: 357 VSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGS 416

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           +FDP+G ++R WLPEL  +P ++IH P             +L +NYP PI+D   A    
Sbjct: 417 KFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERL 476

Query: 471 LNQYYAA 477
           +   +  
Sbjct: 477 MEAIFKM 483


>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
 gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
 gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TX1467]
          Length = 477

 Score =  289 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa]
 gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  289 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 219/492 (44%), Gaps = 28/492 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   DS+  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     ++ L   P  + +   + +  +  F    +      +   LP   I
Sbjct: 116 KEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 ISGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  D   + RI NP  
Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A 
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474

Query: 468 ---HHTLNQYYA 476
                 L++ + 
Sbjct: 475 VRLEEALSEMWQ 486


>gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1
           [Canis familiaris]
          Length = 606

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland
           1988]
          Length = 467

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 236/480 (49%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +  L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDF--PILDSGEKTANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E           G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 660

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 492 SQMWQL 497


>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
 gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
          Length = 455

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 142/477 (29%), Positives = 215/477 (45%), Gaps = 26/477 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++W R DLR++D+ AL AA  +S   V+ VF+  P         +R+   +  SL 
Sbjct: 1   MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDPRLLETGQPRSRR---LITSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL                + ++ +     +     +   R+       RD  +E  
Sbjct: 57  ALADSLDGH---LVVRT----GNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109

Query: 127 LQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ          +     PG ++  +   Y+V+TPF +A   +           P +R+ 
Sbjct: 110 LQSEGRRLVATGTPYAAGPGLVVTQSGAPYRVFTPFARAWRAHGSPPPA----APPLRIP 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                            L    + ++  Y E RD P +  TS++
Sbjct: 166 WFDGDVGGLALPAVAAAGGPGGIAGEAAARTRWLDFLAEGRLGRYAEDRDRPDLDATSRM 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G + PR     +             GA +++ EL WREFY  ++   P     +
Sbjct: 226 SVPLKYGEIHPRTLLADIASHPDGRTG----GAATFVTELAWREFYADVLWHRPESA-WE 280

Query: 306 PFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              P   ++ ++      +   AW++G TG+PI+DA MRQL   GWMHNRLRMITASFL 
Sbjct: 281 DLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGEGWMHNRLRMITASFLT 340

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL V W +G  YF+ QLLDGD+ASN+ GWQW A TG D+ PYFR+ NP  Q  RFDP+G
Sbjct: 341 KDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYFRVLNPLRQAHRFDPEG 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            ++R W+PEL ++    +H P      N  +  YP  +VDH       L +Y  +++
Sbjct: 401 DYVRRWVPELGHLAGPAVHEPWDHP--NGYAHGYPGRVVDHDAERREALARYELSRR 455


>gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 510

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 180/485 (37%), Gaps = 20/485 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR+ D+  LY A       ++ ++I  P        S R  +FI  SLL +
Sbjct: 16  VNIVWFKRDLRLHDHLPLYNALQEGQ-PLLLLYILEPSLEVDPHYSDRHFNFIKESLLNL 74

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-L 127
           QK L               D+ +          ++  +F +++  +       L  +   
Sbjct: 75  QKELKAFNTKILIIH----DEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLALEAYA 130

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +  I    +    +   +         +V             Q   +      + +   
Sbjct: 131 NNLKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSIEDI 190

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +  +       A  P    G   A+          +   Y     +   A +  S+
Sbjct: 191 NALEDNFKKVSLQTSASSPFQKGGTTMAMRYLTSFLHDNRYLNYAKHISKPSLARKSCSR 250

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY++ G +S RQ +   + +      K K     + + L W+  +        S+   
Sbjct: 251 LSPYIAWGNVSIRQVYQ--EAKHFRESSKNKRAIDGFTSRLRWQAHFIQKFEMEDSMEFV 308

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                + +  +        +AWK+G TG+P++DA MR L   G+++ R+R +T SF   +
Sbjct: 309 SVNKGYHKLSKNVNV-KYQKAWKEGKTGYPLVDACMRCLCETGYLNFRMRAMTLSFFTHN 367

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L   W+    +   Q LD +   +    Q  A  G   +   RI+NP       D  G F
Sbjct: 368 LWQPWQDATYHLAQQFLDFEPGIHYPQIQMQA--GETGINMLRIYNPVKNSYEHDEDGEF 425

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PEL NVP  YIH P +            +  +YP PI+D KK   H  +  +  K
Sbjct: 426 IKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIKKTAKHAGDVLWKLK 485

Query: 479 KQSLL 483
             +++
Sbjct: 486 DDNMV 490


>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
 gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
          Length = 477

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
 gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
          Length = 445

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 220/473 (46%), Gaps = 31/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+ D  AL  A    D +V+A ++  P          R+  +++ +L 
Sbjct: 1   MPT-LLWFRRDLRLHDLPALVDAAQ-GDGQVLACYVLDPRL--HRSAGPRRLQYLHDALR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L  + +V             + + +       + ++ +  +     RRD  + K 
Sbjct: 57  DLRDQLDGRLLV-------TRGRPEQRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKA 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  S    ++ P G +       YKV++PF  A  ++  +A        +     
Sbjct: 110 LGEVPLQPSGSPYLVSP-GRVTKGDGTPYKVFSPFFDAWRRHGWRAP-AQSGPDSATWID 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   +      + P        P GE+ A    R F  +++  Y + R+ P +  TS++S
Sbjct: 168 PADLTGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMS 227

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VCMG 304
            +L  G + PR   + L             GA ++L EL +R+FY  ++  +P       
Sbjct: 228 AHLKFGTIHPRTMVDDLGR---------GKGAQAYLRELAFRDFYAAVLHEWPRSVWWNW 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     E         AWK+G TGFPI+DA MRQL  IGWMHNR+RMI ASFLVKD
Sbjct: 279 NTGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ P+FR+FNP+ QG +FDP GT+
Sbjct: 339 LHLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R W+PEL  V    +H        +D   +YP PIVDH       L +Y   
Sbjct: 399 VRRWVPELKGV--ADVHK-----MGDDRPADYPAPIVDHAAERAEALRRYAEI 444


>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
 gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1
 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
 gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
 gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
 gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
          Length = 606

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 197/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + L+  +   ++ +  + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
              +TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 484

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 216/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            +S + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +     L        P     L 
Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLPPLP 187

Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +      +          Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 ASLKTDALDTLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLETHRTARNGAEIDG---YVRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASFL
Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNY-PLPIVDHKKACHHTLNQYYAAK 478
             +I  W+PEL  +  +   AP         ++  Y   PI+   +     L  Y  ++
Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYRRAPIIGLAEGRDAALAAYAKSR 483


>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
          Length = 641

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 135/497 (27%), Positives = 229/497 (46%), Gaps = 26/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M++ +     +VW R DLRI DN AL AA  N    V  VFI +P++  Q         +
Sbjct: 1   MESNSK---TIVWFRRDLRIEDNPALAAAARN--GSVFPVFIWSPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +  +   ++  L         TK+ YN  Y+   + RD
Sbjct: 56  LKQSLIHLEQSLKSLGAELVLIKAQS---TLSALLDCIEAVGATKVVYNHLYDPVSLVRD 112

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L    I     +  L   P  + +   +++  +  + +  ++   +      P 
Sbjct: 113 HNIKQKLGELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPW 172

Query: 180 PAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             I   G V   +                 +   +  G  NA   L +F + ++  Y + 
Sbjct: 173 KLIPAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKD 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
           R       TS LSPYL  G +S R+ +N ++ +      +        A  +L  +  RE
Sbjct: 233 RLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +   +   WN D    +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYICFNFP-FTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN++R+I ASF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG  +DP+G ++RHWLPEL  +P ++IH P             +L +NYP PI+D 
Sbjct: 412 NPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDV 471

Query: 464 KKACHHTLNQYYAAKKQ 480
             A    +   +  +++
Sbjct: 472 DVARDRLMQAIFIMREK 488


>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
 gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 481

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 148/485 (30%), Positives = 220/485 (45%), Gaps = 22/485 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + L W R DLR TDN+ L AA          +    V AVF    E       +  +  F
Sbjct: 1   MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--HAAPPRVAF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +++     G            D    L +       T++ +N  Y      RD
Sbjct: 59  MLDALAALRERYRDLGSDLIVRH----GDPAAVLPAVANDLDATRVVWNHDYSGLATDRD 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKAL---IQNLVQADLRS 176
             +   L    +  +     +   PG I  +A   Y VYT F +      +N    +   
Sbjct: 115 AGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEP 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             + A       +P    +   +                  +        +Y Y ++RD 
Sbjct: 175 ADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDY 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLM 295
           P  + TS+LSP+L  G +  R  +   +    D      +    +++ +L WREFY  ++
Sbjct: 235 PHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F     + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL    +MHNR+RM
Sbjct: 295 YFN-QNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYFR+FNP  QG
Sbjct: 354 IVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQG 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH +     +  
Sbjct: 414 ERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIAM 473

Query: 474 YYAAK 478
           +  A+
Sbjct: 474 FERAR 478


>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
 gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
          Length = 465

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 216/477 (45%), Gaps = 29/477 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A  +    VI +++  P         +    +++ +L  ++ 
Sbjct: 8   IMWFRDDLRLADNPALSDAAAS--GPVICLYVHDPALA----PGSAARWWLHGALTALED 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G          +    + +     Q     + +NR+Y     + D  ++  L+  
Sbjct: 62  DLRARGGRLCIMAGPAW----QCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALKDM 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +S   ++L  P  +       ++VYTP+ +A+           +P        P  
Sbjct: 118 GVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALPPA 177

Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +                  Q +   +  GEQ A   L  F   ++  Y   RD+PA  
Sbjct: 178 VEDGLVSLSALGLQPTRPDWAQGLRDTWQPGEQAAHARLATFMATRLPGYARLRDLPARP 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LSP L  G +SPRQ W+ ++ +           +     +      + H   F   
Sbjct: 238 ATSGLSPCLRFGHISPRQIWHAVEAQGDVDADGMCFLSEVGWRD------FAHATLFDCP 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +   P  +++ W  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI ASF
Sbjct: 292 DMATRSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIVASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFNP +QG++FDP
Sbjct: 352 LTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQGEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +G ++R W+PE+ ++  + +H P  +     +   YP P+VD        L  +   
Sbjct: 412 EGDYVRRWVPEIAHLAGRAVHTPWKFPH---VHRGYPAPVVDLADGRARALAAWKTL 465


>gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1
 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
          Length = 620

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    +    +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
          Length = 477

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 238/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D+A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
 gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
          Length = 477

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEVI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
 gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
          Length = 476

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 264/475 (55%), Gaps = 12/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A        +A+ I +PEQ + H  +  +  F    L Q+Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHATQT--GPTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L    I         + D  +          + +++ N +  +NE++RD  ++K L  
Sbjct: 64  IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +      F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++    +
Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQPINI 183

Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P      F             +   +P+GE  AL +L +F  +++  Y   RD PA  G
Sbjct: 184 DPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQAG 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS YL+IG LS RQC   L  +     +    G  +WL+EL+WREFY+H++  YP V
Sbjct: 244 TSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIESEGQQTWLDELLWREFYQHILFDYPRV 303

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A FL
Sbjct: 304 SKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAMFL 363

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++FDP 
Sbjct: 364 SKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFDPN 423

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G ++R W+PEL ++  + IH P+++   + L  NYP+PIVD K +    +  +  
Sbjct: 424 GDYLRQWIPELAHLDAKSIHEPYAYKMNSSL--NYPIPIVDLKSSRARAIAAFKE 476


>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
           DSM 6242]
 gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
           6242]
          Length = 467

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 216/473 (45%), Gaps = 20/473 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFIYASLLQ 67
            L   R D+R+ DN AL AA   SD  VI  FI  P      G +  +    F+  SL  
Sbjct: 8   SLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFLLESLYD 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +                   +        +  +F N  Y    ++RD  +    
Sbjct: 67  LKGQLEKVNGRLYLFSGLPEG----VIGQLLENLEIDAVFVNHDYTPFSIKRDMQIASIC 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +    F D +L  PGSI       YKV+T F +   +  V                
Sbjct: 123 TDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFREASKRDVAVPSMFSGGSFFTGDC 182

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V   +   F        +    +    A  +       +   Y  +RD+P+++GT+ LS
Sbjct: 183 GVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSLSQFVNYDTERDLPSVKGTTGLS 242

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +  +G +S R+ +  + +E             + +NEL WR+F+  +   +P V     
Sbjct: 243 AHNKLGTISIREFYYSVIDELGRG--------HTLINELYWRDFFTQISFEFPDV-FKHA 293

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + + W+ D     AW  G TGFPI+DA MR+LNT G+MHNR+RMI ASFLVKDL 
Sbjct: 294 FKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVASFLVKDLH 353

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW+ GE YF S+L+D D   NNG WQWAASTG DS PYFRIFNP +Q K+FD    +I+
Sbjct: 354 IDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKFDKDCKYIK 413

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PEL ++  Q IH        +     YP PIVDH K     L  + AA +
Sbjct: 414 KWIPELEDIEPQRIH---KLEKGDMDIPGYPAPIVDHSKEREVALFMFKAASQ 463


>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
          Length = 621

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +   TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +         K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQMYQQ 490


>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
 gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
          Length = 474

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 227/474 (47%), Gaps = 14/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERSP-KIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      +     +  + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYHQKGSQLLIIR----GNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLTG 186
            I        LL     +    +               L +A  ++      +       
Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGEK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                N+P   +  F   +P+    GE+ A   L +FC+  +  Y E R+ PA  GTS+L
Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRL 240

Query: 246 SPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S  L  G +  R  W   L+        + K    +W  EL WREFY+H + F+P + +G
Sbjct: 241 SAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+G +
Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL +V T+Y+               YP PIVDH +        Y   K
Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471


>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
          Length = 484

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 168/475 (35%), Positives = 241/475 (50%), Gaps = 21/475 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSHFIYASLLQV 68
            LVWLRNDLRI DN AL AA       + AV++     + R  G + R   ++  SL  +
Sbjct: 21  ALVWLRNDLRINDNPALDAAAETG-GHITAVYVHETVAEIRAPGCAVR--WWLDQSLEAI 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L+ +GI           D  + L     +  VT+LF+NR+Y   E   D  L+ +L+
Sbjct: 78  RKQLADRGIELLIET----GDPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLK 133

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +     LL  P  +   +   Y+V+TPF KAL  + +   L             
Sbjct: 134 ESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHHHIPRPLSRRQWDIKPTQET 193

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               N+P +     +  D ++ IGE  A   L +F +  +  Y E RD+P I GTS+LSP
Sbjct: 194 CYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSP 249

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S RQ W        +       G   +L+ELIWR+F  H +     +      
Sbjct: 250 HLRFGEISARQAWYATLAFMDEHHSARAGG-EKFLSELIWRDFNYHQLYHRRDISRHDM- 307

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I W  D    +AW++G TGFPIIDA MRQL   GWMHNR+RM+ ASFL K+LL+
Sbjct: 308 RDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLI 367

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GEE+F   L+DGD+ASN G WQW A  G D+ PYFR+FNP +QG++FD +G ++RH
Sbjct: 368 DWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEGQYVRH 427

Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           W+PEL+ +  +++H P              L   YP PI+D + +      +  +
Sbjct: 428 WVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKRLNS 482


>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
 gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
          Length = 477

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + M V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 4   RKGSVM-VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120
             S+L  +K L  + I         + D +   +    Q    T +++N         RD
Sbjct: 61  T-SVLAFRKLLKCESIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +   +  +   I         L     I+N + Q YKV+TP+ +       +  ++    
Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L        +     +  +    +       A   L +F ++++  Y   RD PA 
Sbjct: 176 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP
Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI AS
Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466

Query: 474 YYAAKKQSLL 483
           Y  AK+++ +
Sbjct: 467 YEWAKEKAKI 476


>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
 gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
          Length = 450

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 216/478 (45%), Gaps = 36/478 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+  + W R DLR+ DN AL +A        ++V+ +F+     W      + +  ++ A
Sbjct: 1   MTT-IHWFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWG--PSGSPRRDYLLA 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +S    G      +        E L +   +     +     +E     RD+ +
Sbjct: 58  SLRALDES---MGGRLVVRR----GAPTEVLPAVAREVGARTVHVAESFEPFGRARDEEV 110

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           E  L    +  +    +  + PG +L      Y+V+TPFR A + +      +       
Sbjct: 111 ETALAEDDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDHGWCGPAQ------- 163

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                          D P    +P+ P GE+ A         E V  Y + R+ P +  T
Sbjct: 164 --DPGEVDWAELPSEDLPEADGEPLRPAGEEAA-LERWHEFLEDVAGYDDDRNRPDLDLT 220

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L  G + PR     LK    +       GA S+ +EL WREF+  ++   P   
Sbjct: 221 SRLSVPLKWGEIHPRTLLADLKNLRDE-------GAASFRSELAWREFHADVLFHSPEAA 273

Query: 303 M--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +  +P       ++     +AW +G TG+P++DA MRQL   GWMH R+RM+  SF
Sbjct: 274 TLSIREVMPDDAWTPRSQADRWFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W+ G  +FM  LLD D + N   WQW A TG D+ PYFRIFNP  QG +FDP
Sbjct: 334 LVKDLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDP 393

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G ++R W+PEL  +P + +H P       +   +YP  +VDH +    +L+ Y   K
Sbjct: 394 DGEYVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAYARFK 448


>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marinobacter aquaeolei VT8]
          Length = 505

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 187/481 (38%), Gaps = 24/481 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +VW + DLR+ D+  LYAA   S   V+ +++  PE W+Q   S RQ  F+  SL 
Sbjct: 1   MAV-VVWFKRDLRVEDHGPLYAAVQ-SGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++K L + G            + I  LD    Q  +T++F +++   +   +       
Sbjct: 59  SLRKQLKRLGSDLLIAH----GEVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIA 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                    +  S  +         +    V           ++++     P        
Sbjct: 115 ---------WCQSQQIEFREWQGFGVVRRLVNRDDWDQHWNRIIKSTRLPAPEGIRSPDT 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244
              P ++P                G + A+ +L  F + +   Y      P       S+
Sbjct: 166 SGWPQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSSPLTAPRACSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           LSP+L+ G +S R  + + KE     + L + K    S+ + L W   +   +   P + 
Sbjct: 226 LSPHLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELE 285

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                           +S  L  W++G TG+P++DA MR L   GW++ R+R +  +   
Sbjct: 286 FRAMHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGWINFRMRAMLMAVAS 345

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L + WR    +      D +   +    Q    +G   +   RI+NP +Q ++ DP+G
Sbjct: 346 YQLWLHWRDPALHLARLFTDFEPGIHYP--QAQMQSGLTGINALRIYNPVLQSQKLDPEG 403

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FIR W+PEL  VP + IH P               Y  P+ DH++A           +K
Sbjct: 404 EFIRRWIPELAGVPAEMIHTPWLMTPAQKQRFGGNTYISPVCDHEQAARVARKAVGEFRK 463

Query: 480 Q 480
           +
Sbjct: 464 R 464


>gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 481

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 162/481 (33%), Positives = 232/481 (48%), Gaps = 18/481 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA      KV+ VF   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNTGL-AAAKRRSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G            D ++ + +         +F+N   E     RD+ +   L+ +
Sbjct: 65  RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120

Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182
            I     +       P  I       Y VYTPF K  I       + +L           
Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        +P   D  F   +  +   GE  A   L +F  + +  Y EQR+ PA+ G
Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPAVDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W   ++        +      +W  EL WREFY+H M  +P 
Sbjct: 241 TSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  F    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR RMI ASF
Sbjct: 301 LADG-AFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL++ ++GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP
Sbjct: 360 LTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQTQKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +G +IR W+ EL +V T+Y+            ++ YP PIVDHK   +    +Y   K  
Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNT 477

Query: 481 S 481
           S
Sbjct: 478 S 478


>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
          Length = 464

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 153/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       + + W R DLR+ DN ALY A    +   I +FI    Q    GI      +
Sbjct: 1   MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----GIGGASKLW 50

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  SL  K             + +E +     +  +T  ++NR Y+   + RD
Sbjct: 51  LHYSLNSLNSSLDNKL-------NFYSGNPLEIIRKIIKENNITDFYWNRCYDKYSIDRD 103

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176
             +++ LQ   I  +  +  L + P          YKVYTPF      + +        +
Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                         S       + +Q I   + IGE  +  IL +F   KV  Y   RD 
Sbjct: 164 FSYLRKLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   TS+LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + 
Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +YP     K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI
Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q +
Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +F+    +IR ++PEL  +P + I  P    +         L  NYP PIVD KK+    
Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456

Query: 471 LNQYYAAK 478
           L  +   K
Sbjct: 457 LQLHNQIK 464


>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
 gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
          Length = 477

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|746118|prf||2017201A DNA photolyase
          Length = 486

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 165/477 (34%), Positives = 234/477 (49%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R D R+ D+ AL  A         K +A F   P   +   +      + + +++Q 
Sbjct: 16  VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 72

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L   G        +     +  L        +  ++ N     +   RD+  E  L 
Sbjct: 73  KQMLKTNGGDLYIITGTIEGGQLSKL--LQAFPEIDAVYANDDRVGDGRLRDEAAEHFLA 130

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     +      P  +L      YKV+TP+ KA  +   +          +     
Sbjct: 131 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 190

Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            T  +      +     +       IGE++A+  L+ F K+++  Y   RD P+I GTS+
Sbjct: 191 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 250

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  G +S R  +  +     D        A ++L EL WR+FYR +  + P  C  
Sbjct: 251 LSPYIKTGAVSSRSIYYHILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKD 304

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KD
Sbjct: 305 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 364

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+
Sbjct: 365 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 424

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR ++PELN+VP  YIH P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 425 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 481


>gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light
           photoreceptor
 gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana]
 gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana]
 gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana]
 gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana]
 gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana]
 gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana]
 gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana]
 gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana]
 gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana]
 gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana]
 gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana]
 gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana]
 gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana]
 gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana]
 gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana]
 gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana]
 gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana]
 gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana]
          Length = 612

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas
           atlantica T6c]
          Length = 481

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 185/478 (38%), Positives = 257/478 (53%), Gaps = 13/478 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  LVWLR DLR   N A+  A  N D  V AV+  T EQW  + +S+ +   IY  L+
Sbjct: 1   MS-ALVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLV 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + K L+++ I  Q  + S +      L   C +  VT ++ N +YE +E +RD  ++  
Sbjct: 59  NLHKELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNI 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I  +      L   + + +     YKV+TP+ K  +   +Q             T
Sbjct: 119 LKKIDIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQLPGVPDNHKASDT 178

Query: 186 GPVTPSNIP--------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           G    +N                 +     +P         L  F  E    Y + RDIP
Sbjct: 179 GLSQSANDSIQIDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNRDIP 238

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           ++ GTS++SPYLSIG LSP QC   + +E+ D  +  + GA++W+ E+ WR+FYR++M  
Sbjct: 239 SVDGTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYVMYH 298

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V  G PF    +  +W  + H   AWK G TG+PI+DAAM  L   GWMHNRLRMI 
Sbjct: 299 FPHVSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLRMIV 358

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF  K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +R
Sbjct: 359 ASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSER 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           FDP+G FI+ WLPEL ++  + IH P    D   +   Y LPIV+HK +   T  Q+ 
Sbjct: 419 FDPKGEFIKTWLPELEHLSPKQIHEPSKHCDVQRIG--YALPIVEHKASVMRTKEQFK 474


>gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649]
 gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649]
          Length = 455

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 230/473 (48%), Gaps = 20/473 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++WLR DLR  D+ AL AA   +  +++  ++  P  W   G  A +  ++ A+L   
Sbjct: 2   TSVLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWA--GAGAVRRAWLAAALEAT 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++     G+         + D  E + +   +   T +   R+      RRD+ +   L 
Sbjct: 60  REEFDD-GLTLL------WGDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLA 112

Query: 129 HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I      +       ++ + +   YKV+TPF KA   +             +R    
Sbjct: 113 AQGIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGHGWPDPAPRPSELPLRHVRN 172

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +            +  +   GE+ A+   R+FC+  +  Y   RD+PA  GTS+LSP
Sbjct: 173 DAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDLPATDGTSRLSP 232

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL +GV+ PR     L     +       GA +++NEL WREFY  ++   PS    K  
Sbjct: 233 YLKLGVVHPRTLLADLAGRRGE-------GAQTYINELGWREFYADVLWHNPSSA-WKDL 284

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 + +++ +  ++AW+ G TG+PI+DA MRQL   GWMHNR+RMITASFL KDL V
Sbjct: 285 RDPLAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMITASFLTKDLHV 344

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W +G  +F+  L+DGD+ASNN GWQW A TG D+ PYFR+FNP  QG++FD  G ++R 
Sbjct: 345 WWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGEKFDVDGDYVRE 404

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           W+PEL ++  +  H P    D       YP  IVDH +     L +    K  
Sbjct: 405 WVPELAHLAGKAAHQPWEHPDGYAHG--YPQRIVDHAEERREALRRLGELKDS 455


>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
 gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
          Length = 477

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + M V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI
Sbjct: 4   RKGSVM-VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120
             S+L  +K L  +GI         + D +   +    Q    T +++N         RD
Sbjct: 61  T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +   +  +   I         L     I+N + Q YKV+TP+ +       +  ++    
Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L        +     +  +    +       A   L +F ++++  Y   RD PA 
Sbjct: 176 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP
Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI AS
Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466

Query: 474 YYAAKKQSLL 483
           Y  AK+++ +
Sbjct: 467 YEWAKEKAKI 476


>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
 gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1
 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
          Length = 621

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    +    +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and
           cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs
           gb|W43661 and gb|Z25638 come from this gene [Arabidopsis
           thaliana]
 gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T     +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         +
Sbjct: 1   MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD
Sbjct: 54  MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P 
Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
             + +T            +   +          +   +  G  NA  +L +F ++++  Y
Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
            +         TS LSPYL  G +S R  +   + +      D   + +  A  +L  + 
Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            RE+ R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   
Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     
Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PI
Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469

Query: 461 VDHKKACH 468
           VD   A  
Sbjct: 470 VDIDTARE 477


>gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
 gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
          Length = 477

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + M V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI
Sbjct: 4   RKGSVM-VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120
             S+L  +K L  +GI         + D +   +    Q    T +++N         RD
Sbjct: 61  T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +   +  +   I         L     I+N + Q YKV+TP+ +       +  ++    
Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L        +     +  +    +       A   L +F ++++  Y   RD PA 
Sbjct: 176 QDRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP
Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI AS
Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466

Query: 474 YYAAKKQSLL 483
           Y  AK+++ +
Sbjct: 467 YEWAKEKAKI 476


>gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana]
 gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana]
 gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana]
 gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana]
 gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana]
 gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana]
 gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana]
 gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana]
 gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 219/485 (45%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  S  +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
 gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
          Length = 629

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 139/487 (28%), Positives = 219/487 (44%), Gaps = 26/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +    D ++  L       + TK+ +N  Y+   + RD  ++++L   
Sbjct: 65  SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V 
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181

Query: 190 PSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +I                +   +  G  NA   L +F  +++  Y + R       TS
Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +   + +      +     K     +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +       WN D    + W+QG TG+P++DA MR+L   GWMHNR+R+I +S
Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+ G +YF   LLD DL  +  GWQ+ +    D     R+ +P I G +FD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGAKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470
           P+G ++R WLPEL  +PT++IH P +           +L  NYP PI+D   A       
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREKLTQA 480

Query: 471 LNQYYAA 477
           + + +  
Sbjct: 481 IFKMWEI 487


>gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 219/488 (44%), Gaps = 31/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T     +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         +
Sbjct: 1   MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD
Sbjct: 54  MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L  R I  S  +  L   P  I     + +  +  + K  +   +++ +   P 
Sbjct: 111 HTVKEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
             + +T            +   +          +   +  G  NA  +L +F ++++  Y
Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
            +         TS LSPYL  G +S R  +   + +      D   + +  A  +L  + 
Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            RE+ R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   
Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     
Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PI
Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469

Query: 461 VDHKKACH 468
           VD   A  
Sbjct: 470 VDIDTARE 477


>gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
 gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
          Length = 448

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 229/478 (47%), Gaps = 47/478 (9%)

Query: 3   ATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60
            T  M  + LVWLR DLR+ D  ALY A  N +  V+ +FI              R+  F
Sbjct: 12  NTITMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKFDRRVDF 70

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I+  L  ++K L              + D I+       +  +  ++ NR YE   + RD
Sbjct: 71  IHQVLSDMKKELDAINSSLLV----EYGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARD 126

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + ++K ++ + I  K+F D  +     I+      Y ++TP+ +     L         +
Sbjct: 127 ESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLND-----FYL 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +               F +P                 +L +        Y + RD PA+
Sbjct: 182 KSYPCKKYYHHFYQGDDFKFPDLESLGFSKTDIVYNKFVLSREIVRH---YDKTRDFPAL 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+ S +L  G +S R+      +              ++LNELIWR+FY  ++  YP
Sbjct: 239 KGTSRASMHLRFGTISIRKLARYALDYN-----------ETYLNELIWRDFYMMILYHYP 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +     F    +KI W  +    +AW +G TG+PI+DA MR+LNT G+MHNR+RMI AS
Sbjct: 288 KIVRH-SFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTTGFMHNRVRMIVAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L D DL++NNGGWQWAAS+G D+VPYFRIFNP  Q K+FD
Sbjct: 347 FLTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYFRIFNPEEQTKKFD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P   +IR W+PEL+++                   +YP PIV+HK A    LN Y  A
Sbjct: 407 PNRAYIRKWIPELDSL-------------------DYPKPIVEHKFARERALNVYKKA 445


>gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1
 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
          Length = 620

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    +    +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP        Y   +++            ++P GE  AL  L +  + K      +
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
 gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
          Length = 470

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 183/473 (38%), Positives = 257/473 (54%), Gaps = 11/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIA-TPEQWRQHGISARQSHFIYASL 65
            HLVWLRNDLR  DN ALY A   ++   + IAV +  TP+QW QH  S  ++      +
Sbjct: 4   THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + K+L+  GI     +   FD   + +  +CL   +  L++NR   I+E +RD+ + +
Sbjct: 64  KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +LQ   I      + ++    +L+     +KV+TPF    +  L Q D+  LP P  +  
Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P     +       +   +P     A   L +FC  K  +Y E RD P    TS L
Sbjct: 184 ALPEPCLNLTWEKPFRDDL---WPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G L PRQC   +         + +     WL EL WR+FYR LM+ +P +C  +
Sbjct: 241 SPYLALGALGPRQCLEAIFYTCNQEERRWQDSI--WLKELAWRDFYRQLMSHFPFLCKSR 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF P T  + W ++    QAW +G TGFPI+DAAMRQLN  GWMHNRLRM+ ASF  K +
Sbjct: 299 PFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKLM 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D  G FI
Sbjct: 359 FADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL  +  + IH P     K     +YP PI+D+K A    +  +   K
Sbjct: 419 RRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPARLAAIAAFDELK 468


>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
 gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
          Length = 455

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 204/473 (43%), Gaps = 23/473 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S H+VW R DLR+ D  AL AA       V+ V+I   E      +   Q  +++ SL  
Sbjct: 3   SPHIVWFRQDLRLHDQPALLAAAEA--GPVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K L   G      +      ++E L +   +     +   R YE    + +  L  RL
Sbjct: 61  LAKDLKALGSRLILRR----GRAVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELGDRL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                       ++   GS     +              ++ ++A            +  
Sbjct: 117 CLYDGNHLARPELVT-TGSGKPFRIYSAFWKGLQGHMPPEHPLEAPDALTAPDRWPASDK 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +   ++           D  +  GE  A          K   Y   R++P+ +G+S+LSP
Sbjct: 176 LADWDLLPTKPDWSTGFDADWTPGEATARE-RMADFVAKAAAYDTARNMPSEEGSSRLSP 234

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +SPR  W+ L  +             ++  EL WR+F   ++   P        
Sbjct: 235 HLHFGEVSPRAVWHALDRKAE---------TETFRKELAWRDFTDGVVMAIPDYADRNGR 285

Query: 308 IPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + +       +    L+AW+ G+TG+PI+DA MRQL T GWMHNR+RMITASFL+K L
Sbjct: 286 EAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMITASFLIKHL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +F   L+D D  +N+  WQW A TG D+  + RI  P  Q ++FD  G +I
Sbjct: 346 LIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSEKFDA-GDYI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL ++    IH P     +     +YP  I+ H++     L    + +
Sbjct: 405 REWVPELKDLSDAAIHDPDEAGCR---PKDYPAKIIGHREGRERALAAGKSVR 454


>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
 gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
          Length = 494

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 229/479 (47%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 4   PAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 63  HGSLAGLDAALARHGGRLLLLR----GDAQREIERLVRDTGAAAVYWNRRYAQPQRDADA 118

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQAD------- 173
            L+  L+ R +     +  L   P  +L  +   Y+V+T + +A  ++   A        
Sbjct: 119 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQ 178

Query: 174 ---LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                       R       +  P   D+     D      E  A   L  F    +  Y
Sbjct: 179 IVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGY 238

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 239 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGWREF 298

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 299 SYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 358 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 417

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 418 PVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLVEH 476


>gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 219/485 (45%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  S  +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
          Length = 457

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 216/474 (45%), Gaps = 22/474 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D  AL AA   +DA V+ +F+           +  ++ F+   L 
Sbjct: 1   MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G            D +E +     +    ++           RR++ L + 
Sbjct: 60  DLDHSLRERGGRLVIRS----GDLVEEVCRVVTEADADEVHLAEGVSAFARRREERLREA 115

Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         + V    PPG++   +   + V+TP+ +   +  ++  L     P    
Sbjct: 116 LESEGRRLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHPL---GAPRTVR 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S               +   GE      L  + +     Y +Q D  A   TS+
Sbjct: 173 VPDGIGSEKVPARGDVRGVSAGLAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAGDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LS  +  +R + +          GA +++ +L WR+F+  ++A  P     
Sbjct: 233 LSPHLHFGTLSAAELVHRARRKEGA-------GATAFVRQLCWRDFHHQVLAARPDASHA 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                              +AW++G TG+PI+DAAMRQL   GWMHNR R++ ASFL K 
Sbjct: 286 DYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAASFLSKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR G ++F+S L+DGD+A+N   WQW A TG D+ P+ R+ NP  Q  R+DP G +
Sbjct: 346 LYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRYDPDGAY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  V  + +H P +    +   ++YP P+V   +     L+++  A+
Sbjct: 405 VRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVVGLSEG----LDRFRRAR 454


>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
 gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
 gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
          Length = 654

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 129/490 (26%), Positives = 214/490 (43%), Gaps = 28/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ +FI  P  + Q+        ++  SL  + K
Sbjct: 8   VVWFRRDLRIHDNPALAAAAK--EGSVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLGK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +    D ++  L         T++ YNR Y+   +  D  ++  L   
Sbjct: 66  SLELLGCPLVLIRAE--DSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNELSAH 123

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +  L   P  + +   Q +  +  + +  +   ++      P   +   G   
Sbjct: 124 GISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPGLAN 183

Query: 190 PSNIPRFF---------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                            +     +   +  G +NA ++L +F    +  Y +        
Sbjct: 184 VRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVGGT 243

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ +  +         +   + +     +L  + +RE+ R+L  
Sbjct: 244 TTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYLCF 303

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     + F+   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 304 NFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 362

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 363 VSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 422

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +PT++IH P S           +L  NYP PIV+   A    
Sbjct: 423 KYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARECL 482

Query: 469 -HTLNQYYAA 477
              ++  +  
Sbjct: 483 DDAISTMWQL 492


>gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus]
 gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus]
          Length = 680

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 224/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+
Sbjct: 11  CSIVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 69  DSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALT 125

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  KSF+  +L  P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 126 AEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 185

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                    F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 186 SKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 245

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S R+ ++ L+ +      +     +     +L  +  RE+ R++   +
Sbjct: 246 SFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 305

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 306 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 364

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 365 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 424

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP PIV   +A      
Sbjct: 425 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHE 484

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 485 ALSQMWQL 492


>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
 gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
 gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
 gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 471

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 163/476 (34%), Positives = 236/476 (49%), Gaps = 25/476 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  +I +F   PEQ+     S     F ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + +  L+    +     K+++NR       +RD+   +  
Sbjct: 58  KQKVDE-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I               +   A   YKV+TP+ K   + + +  L     P      
Sbjct: 113 AKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKERPLPISINPEKVNNT 172

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F +   +        +GE  A   L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E          +G  ++  EL WR+ + +++         +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           R ++ EL  +P ++IH P    ++        +  +YP PIVDHK+     + +Y 
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461


>gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
 gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
          Length = 565

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 165/486 (33%), Positives = 232/486 (47%), Gaps = 43/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C     + LF N +YE++E+RR+  L +  
Sbjct: 160 LKSGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLC 219

Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173
             + I    +D   ++ PG +     + Y VYTP+ ++ +  L Q               
Sbjct: 220 ATQGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                    +  +      N  +  +   +    M+P GEQ A   LR+F  EK   Y  
Sbjct: 280 GDARKHFKDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHS 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R                        L  L+  +   
Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTA---------------PFIEAMKLCGLVITD--- 381

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                  S  M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 382 ------DSSSMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 556 EKYKKA 561


>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG]
 gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
          Length = 477

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DIARE 479


>gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus]
          Length = 618

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 139/484 (28%), Positives = 218/484 (45%), Gaps = 28/484 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLTQSLKALGSEPTLIKTH---NTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   V++ +   P   I
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLI 175

Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            LT   T                      +   +  G  NA  IL +F ++++  Y +  
Sbjct: 176 PLTAAGTVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNS 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
                  TS LSPYL  G +S R+ +   + +      D   +    A  +L  +  R++
Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRDY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMH
Sbjct: 296 SRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ N
Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD  
Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDID 474

Query: 465 KACH 468
            A  
Sbjct: 475 TARE 478


>gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 476

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 149/461 (32%), Positives = 224/461 (48%), Gaps = 10/461 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L ++G      Q     D    + +         +++ R+YE   + RD  L+  
Sbjct: 60  SLDRALREQGGRLLAMQS----DPTIAVPALARAVDAQGVYWTRRYEPAAIARDAALKST 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + I   S+  ++   P ++   A Q Y+V+TPF + L  +L          P   +T
Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMT 175

Query: 186 GPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +    +            +   +  GE  A   L +F  E +  Y + RD PA  GT
Sbjct: 176 TDDSTAVEALGLLPRIRWDAGLADAWRPGEGGAWERLEQFVDEALAEYGDARDAPARLGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +L  G ++P Q    L+E         +     +L EL WREF  HL+  +P   
Sbjct: 236 SRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLYHFPHTT 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +        D   L  W+QG TG P++DA MRQL   GWMHNR+RM+ ASFL 
Sbjct: 296 DANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  +FDP  
Sbjct: 356 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            +++ WLPEL+ +P   +H P         +  YP P+VD 
Sbjct: 416 AYLKRWLPELSRLPADVLHRPWKHSA-ALAACGYPTPMVDL 455


>gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
           10712]
          Length = 457

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 204/472 (43%), Gaps = 18/472 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA    + +V+ +F+  P   R    +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L ++G            +    +           +                    
Sbjct: 60  ALDSALRERGGRLVVRSGDPVAEVCAVVRE--ADADEVHMAAGCSGFARRREDRLRRALE 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              R +         LP G++       Y V+TP+ +   +  ++  L     P +  T 
Sbjct: 118 ADGRRLYVHDAVVTALPTGAVTPGGSDHYAVFTPYFRRWSRERLREPLA---APRVVRTP 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S               +   GEQ     L  +  E V  Y E+ D  A   TS+LS
Sbjct: 175 RGIRSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDDLAGDATSRLS 234

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G +S  +  +R +            GA +++ +L WR+F+  ++A  P       
Sbjct: 235 PYLHFGAVSAAEAVHRARSRGGA-------GAEAFVRQLCWRDFHHQVLAARPDAASDDY 287

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                      +    L+AW++G TG+P++DAAMRQL   GWMHNR R++TASFL K L 
Sbjct: 288 RTRHDRWRRGTEAEADLRAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLTASFLTKTLY 347

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G  +F+  L+DGDLA+N   WQW A TG DS P  R+ NP  Q KR+DP+G ++R
Sbjct: 348 IDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRP-NRVLNPVTQAKRYDPEGAYVR 406

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  +    +H P     +     +YP P+V+        L ++  A+
Sbjct: 407 RWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVELADG----LARFRRAR 454


>gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 458

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 219/475 (46%), Gaps = 24/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V +V   +DLR+ D+  L AA  ++   V+ +F+           +  +  F+   L 
Sbjct: 1   MHVSVVLFTSDLRLRDHPPLRAALDSAGT-VVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G            D +E +     +    ++     +     RR+  L + 
Sbjct: 60  DLDSSLRERGGRLVV----CSGDLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115

Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         D+V +  PPG +       + V+TP+ +   Q    A LR +     R+
Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQ----ARLRDVVAAPRRV 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P      P         I P  P  GE      +  + +  +  Y + RD  A   TS
Sbjct: 172 PVPEHVKGEPLPARDDVPGISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAADSTS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L  G LSP +  +R +            GA + + +L WR+F+R ++A  P    
Sbjct: 232 RLSAHLHFGTLSPVELIHRARRHGG-------PGAEALVRQLAWRDFHRQVLAARPDAAH 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                              ++AW+QG TG+P+IDAAMRQL   GWMHNR R++TASFL K
Sbjct: 285 TDYRTQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLLTASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q KR+DP GT
Sbjct: 345 TLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGT 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +    +H P      +  +L+YP P+V   +     L+++  A+
Sbjct: 404 YVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVVPLSEG----LDRFRRAR 454


>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera]
          Length = 691

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I   SF+  +L  P  + +     +  ++ F    +      +   LP   I
Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T     +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         +
Sbjct: 1   MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +     ++I  +         TK+ +N  Y+   + RD
Sbjct: 54  MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P 
Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
             + +T            +   +          +   +  G  NA  +L +F ++++  Y
Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
            +         TS LSPYL  G +S R  +   + +      D   + +  A  +L  + 
Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            RE+ R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   
Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+R+I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     
Sbjct: 350 GWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PI
Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469

Query: 461 VDHKKACH 468
           VD   A  
Sbjct: 470 VDIDIARE 477


>gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/486 (31%), Positives = 236/486 (48%), Gaps = 23/486 (4%)

Query: 16  NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D R +DN  L AA   +   +  ++ +++   +    HG+S  Q  +   SL  +++ L
Sbjct: 121 RDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREEL 180

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           +QK I   +       + +  +     Q +++ LF N +YE++E+RR   L K L    I
Sbjct: 181 AQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADI 240

Query: 133 CKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                +     +P   +       + V+TP+ +A   +L +                   
Sbjct: 241 SFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFR 300

Query: 191 SNIPRFFDYPFQA--------------IDPMFPIGEQNALHILRKFCKEKVYYYVE-QRD 235
                 FD                    +     GE  A   L+ F            R+
Sbjct: 301 QRNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHL 294
            P++ G S++S + + G ++ R     L +  +   +     GA  W  ++ WR+FYRH+
Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL+ +G++HNR+R
Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNRVR 480

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP  Q
Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540

Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
            ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    L 
Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600

Query: 473 QYYAAK 478
           +Y  AK
Sbjct: 601 RYKEAK 606


>gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
 gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
          Length = 471

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 161/476 (33%), Positives = 240/476 (50%), Gaps = 25/476 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DN ALY AC ++D ++I +F   PEQ+     S     F ++S+   
Sbjct: 2   TSVMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQFITK--SPSHQAF-FSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--QRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + +       H    F + I  L+    +        F   +      R +  L   
Sbjct: 58  KQQVDK-----IAHLQIMFGEPINLLEKLKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q  +   +FDD+ L    ++     + YK++TP+ K   + + +  ++    PA     
Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F              +GE  A + L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEDEEQFVQMAQALPMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G LS R  W  +++           G  ++  EL WR+ + +++         +
Sbjct: 233 SRFLRTGELSIRTVWQAVQKAEP------TDGRTTFEKELCWRD-FYNMIYVSFPNQKNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  + +  Q W+QG TG+P++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FI
Sbjct: 346 LIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           R ++ EL N+P ++IH P     K        L  +YP PI++H++     + +Y 
Sbjct: 406 RKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYE 461


>gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 490

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/477 (24%), Positives = 187/477 (39%), Gaps = 33/477 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D++ L  A       V+ ++I  PE W Q   SARQ  F   SL 
Sbjct: 1   MTLQLVWFKRDLRLVDHQPLARALAR--GPVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++ +  G            D+++ L+    Q  V+ L+ + +               
Sbjct: 59  DLQQACAALGQPLIIRS----GDAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +       LP   ++            +   + + +  A     P+P I    
Sbjct: 115 ----WARERGIPWHELPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGIAPGD 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244
             T   +                 G   AL  L  F   +V  Y      P     G S+
Sbjct: 171 LPTSEALALRS----DPCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFNGCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS Y++ G LS R+   R ++           G  S+ + L W   +   +   P     
Sbjct: 227 LSAYITWGCLSMREVLQRSRDLKGR-------GVSSFTSRLHWHCHFIQKLEDQP-PIEW 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P+   I    D     AW +G TG P +DA MR L   GW++ R+R +  SF   +
Sbjct: 279 EDFHPFMRGIRSL-DHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYN 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DP+GTF
Sbjct: 338 LWLPWRETGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPEGTF 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR W PEL +VP  ++H P S      L    P PIVD  ++      + +  ++ S
Sbjct: 396 IRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEIRRSS 446


>gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum]
 gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum]
          Length = 635

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 141/503 (28%), Positives = 229/503 (45%), Gaps = 31/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M++       +VW R DLRI DN AL AA  N    V+ VFI  P++  Q         +
Sbjct: 1   MESNYK---TIVWFRRDLRIEDNPALAAAARN--GSVLPVFIWCPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +  +   ++  L         TK+ YN  Y+   + RD
Sbjct: 56  LKQSLIHLKQSLKSLGAELVLMKAQS---TLSALTECVDAVGATKVVYNHLYDPVSLVRD 112

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             ++++L    I     +  LL             KV+T F     ++L   +     +P
Sbjct: 113 HNIKQKLGDLGISVQSYNGDLL--NEPWEVYDDDGKVFTTFDAYWEKSLSIQNEPVSQLP 170

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYV 231
             RLT       +    +   +          +   +  G  NA   L +F +  +  Y 
Sbjct: 171 PWRLTQAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYS 230

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIW 287
           + R       TS LSPYL  G +S R+ +N ++ +      +     K  A  +L  +  
Sbjct: 231 KDRLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGL 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R++   +P     +  +       WN D    +AW+QG TG+P++DA MR+L   G
Sbjct: 291 REYSRYICFNFP-FTHERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HN++R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 350 WVHNKIRVIVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELER 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           + NP +QG  +DP+G ++RHWLPEL  +P ++IH P             +L +NYP PI+
Sbjct: 410 LDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPII 469

Query: 462 DHKKACHHTLNQYYAAK-KQSLL 483
           D   A    +      + K++ +
Sbjct: 470 DVDVARDRLMQAIIIMREKEAAV 492


>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
 gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
 gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS8232]
 gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
          Length = 469

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 172/483 (35%), Positives = 242/483 (50%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +K L  +GI         + D +   +    Q    T +++N         RD+   +  
Sbjct: 59  RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         L     I+N + Q YKV+TP+ +       +  ++        L  
Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +     +  +    +       A   L +F ++++  Y   RD PA  GTS+LS
Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP     +P
Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL
Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+
Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK++
Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AKI 468


>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
 gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
          Length = 474

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 163/476 (34%), Positives = 230/476 (48%), Gaps = 17/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ VF   P    +  I+  +  ++   L Q+Q+
Sbjct: 6   LFWHRRDLRISDNVGLAAAFELSP-KLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G            D  + + +         + +N   E     RD+ +   L+ +
Sbjct: 65  GYRQAGSQLLILH----QDPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKEK 120

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPVPAI 182
            I        LL  PG I   +   Y VYTPF K          + +         +   
Sbjct: 121 GIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNWQGQSKAEPVATLTRVESLTEIEQD 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                                 + + P GE+ A  IL +FC   +  Y EQR+ P + GT
Sbjct: 181 NALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNFPGVDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  GV+  R+ W   +  +      + +    +W  EL WREFY+H M F+P +
Sbjct: 241 SKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G     + +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AQGPYRQKFQDF-PWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q K+FDP 
Sbjct: 360 TKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           G +IR WLPEL++V T+Y+ +     +       YP PIVDH +        Y   
Sbjct: 419 GEYIREWLPELSSVDTEYVVS-GKIPESGREMCGYPAPIVDHNQQQRRFKELYKEL 473


>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Cupriavidus taiwanensis LMG 19424]
          Length = 519

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 168/490 (34%), Positives = 239/490 (48%), Gaps = 26/490 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR TD+ AL+ A  +  A+V  VF+   +           + R+  FI  SL
Sbjct: 23  GLVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSL 81

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124
           +++  +L+  G           D +   + +         +F N  YE     R + + +
Sbjct: 82  VELAGTLAAAGGGLIVLH----DRAQTAIPALARALDAEAVFANHDYEPAANARDEAVRQ 137

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIR 183
                     +F D  +     ILN   + + V+TP++ A ++     D       P + 
Sbjct: 138 ALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPYLP 197

Query: 184 LTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              PV      P        +    +  +      +    L +    ++  Y  +RD PA
Sbjct: 198 ALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEFTGRMGDYGRRRDYPA 257

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       E  +        GA  WL+ELIWR+FY  ++  +
Sbjct: 258 LRGPSYLSVHLRFGTISIRTLARVAHEAMLRGGADSA-GAAVWLSELIWRDFYFMILHHH 316

Query: 299 PSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P V  G  F P  + I W           AW+   TG+P+IDAAM Q+   G+MHNRLRM
Sbjct: 317 PRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNRLRM 376

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 377 VTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 436

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           ++FDPQG FIR +LP+L  +P +Y+HAP +  +         L  NYP P+V H  A   
Sbjct: 437 QKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVARQQ 496

Query: 470 TLNQYYAAKK 479
           TL +Y A K+
Sbjct: 497 TLRRYEAVKQ 506


>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
          Length = 587

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    +    +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 227/489 (46%), Gaps = 26/489 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  SL+ 
Sbjct: 5   SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL   G      +  +   +IE L         TKL YN  Y+   + RD  ++++L
Sbjct: 63  LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  +S++  +L  P  I +     +  +  +    +   ++      P   +   G
Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAG 179

Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   +I                +   +  G  NA   L +F ++ ++ Y ++R      
Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGN 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+  + ++ +      +     +     +L  +  RE+ R+L  
Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+HNR+R+I
Sbjct: 300 NFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG 
Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469
            +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++   A    
Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478

Query: 470 --TLNQYYA 476
              +   + 
Sbjct: 479 TEAIFMMWE 487


>gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 684

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 492 SQMWQL 497


>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
 gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
          Length = 478

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 164/475 (34%), Positives = 231/475 (48%), Gaps = 15/475 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLRNDLR+ DN AL AA       VI ++I   E      +      ++  SL  +  
Sbjct: 10  IVWLRNDLRLADNPALIAAAATG-RPVIPLYILD-ETPGVRPMGDASLWWLDKSLAALDA 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      +   L+          + +NR Y+   + RD  L+  L+  
Sbjct: 68  ALRATGSRLILRRGP----ARAVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDE 123

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            + C+SF+  +L  P ++ N + Q YKV+TP+ +A    L    V+   ++L  PA    
Sbjct: 124 GVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAPAHWPH 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G              +     ++  GE  AL  L  F    V  Y  +RD P ++ TS+L
Sbjct: 184 GDALEDWTLHPALLDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATSRL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G + PRQ W        +    P      +L+E+ WRE + H + F+       
Sbjct: 244 SPHLHFGEIGPRQVW-AAARHAAEAGDAPAGQVEKFLSEIGWRE-FNHSILFHNPDLPHT 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  +   W K+    +AW +G TG+PI+DA MR+L   G+MHNR+RMI ASFLVK L
Sbjct: 302 SFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASFLVKHL 361

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +F   L+D DLASN G WQW A  G D+ PYFRIFNP  QG++FDP G ++
Sbjct: 362 LIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDPAGAYV 421

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  +P   IH P           +  YP PIV H  A    L  Y   K
Sbjct: 422 RRWVPELAKLPDALIHEPWKASPDPGAAAARIYPEPIVGHPAARERALEAYRGLK 476


>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
          Length = 477

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 151/486 (31%), Positives = 235/486 (48%), Gaps = 23/486 (4%)

Query: 16  NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D R +DN  L AA   +   +  ++ +++   +    HG+S  Q  +   SL  +++ L
Sbjct: 121 RDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREEL 180

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           +QK I   +       + +  +     Q +++ LF N +YE++E+RR   L K L    I
Sbjct: 181 AQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADI 240

Query: 133 CKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                +     +P   +       + V+TP+ +A   +L +                   
Sbjct: 241 SFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFR 300

Query: 191 SNIPRFFDYPFQA--------------IDPMFPIGEQNALHILRKFCKEKVYYYVE-QRD 235
                 FD                    +     GE  A   L+ F            R+
Sbjct: 301 QRNSHLFDLKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHL 294
            P++ G S++S + + G ++ R     L +  +   +     GA  W  ++ WR+FYRH+
Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL  +G++HNR+R
Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNRVR 480

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP  Q
Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540

Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
            ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    L 
Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600

Query: 473 QYYAAK 478
           +Y  AK
Sbjct: 601 RYKEAK 606


>gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ ++  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I     +  L   P  I     + + +++ + K  +   +++ +   P    
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVMLPPPWRLR 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +              +  G  NA  IL +F  +++ YY + 
Sbjct: 176 PITAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   + +     +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP IQG  FDP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
 gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
          Length = 470

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 233/479 (48%), Gaps = 24/479 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WLRND R+ DN+AL     + +      F+       ++   + Q  ++Y +L    K
Sbjct: 6   IYWLRNDFRLNDNEALSYLLSSENND----FVFFSYDKEKYKFRSAQKWWLYKTLKIFDK 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            LS+ G+ F       +     +L+     +++T++ +N+ +   E+  +  + K L+  
Sbjct: 62  KLSEIGVKFIVENDLEY----SFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLEKN 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLTG 186
            I      S LL                        + +   + +     +         
Sbjct: 118 NIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKKNLIKSKKSLKNN 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +           ++  +  +  GE  AL  ++ F  EK+ +Y + RD P+I+GTS+LS
Sbjct: 178 NQSKIETILPKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGTSKLS 237

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G +SP++ ++   +           G   +LNE+ WREF  HL+  +P +     
Sbjct: 238 PHLAFGEISPKKIYDECTKIKNKK-----IGVTKFLNEIGWREFAYHLINHFPIMLKKN- 291

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                +K  W+++   L  WK+G TG+PI+DAAM+QL   GWMHNRLRM+  SFLVK L 
Sbjct: 292 LRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFLVKHLR 351

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++W  GE+YF   LLD D A+N  GWQW A  G D+ PYFRIFNP  QG++FDP G F++
Sbjct: 352 INWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDPNGEFVK 411

Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +W+P L  VP ++IH P    ++       +L  +Y  PIVDHK A    L  +   KK
Sbjct: 412 YWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALKAFEFTKK 470


>gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 499

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 200/482 (41%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G            D++E  +    +  +  ++ +++   +   +  +  ++  
Sbjct: 59  NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++           ++            + + + + +++A  +   +   ++  P 
Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
             S    + D            G   AL IL  F  ++   Y ++   P       S+LS
Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PY++ G +S ++ + +  +   ++         K  S   S+L+ L W   +   +   P
Sbjct: 226 PYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+        + +      +    +AWK   TG+P+IDA MR L   GW++ R+R +  S
Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMRAMLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    D
Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FIR WLPEL NV  + IH P         SL+YP P +D K+A     +  Y  +K
Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460

Query: 480 QS 481
            S
Sbjct: 461 SS 462


>gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 681

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I   SF+  +L  P  + +     +  ++ F    +      +   LP   I
Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
 gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
          Length = 515

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 162/490 (33%), Positives = 235/490 (47%), Gaps = 28/490 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              L+W R DLR+ DN ALY A      +V+ VF+             R+  FI  SL++
Sbjct: 13  PKGLMWFRRDLRVDDNAALYHALRAC-RQVVCVFVFDRAILDPLPRIDRRVEFIRESLVE 71

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L                 +IE + +      V  +F NR  E + + RD  +   L
Sbjct: 72  LEEELRALSGGLIVRHAH----AIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGAL 127

Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNL------VQADLRSLPVP 180
            +  +         +     +LN   Q Y V+TP+++A +  +                 
Sbjct: 128 ANAGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADAL 187

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A       TP+       +    +  +           L +   +++  Y   R+ PA++
Sbjct: 188 APPPAAHRTPAPSLEDLGFGRSNLSELGIPTGSQGAAALFEDFFQRIDRYDAARNFPAVR 247

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S L  +L  G +S RQ      + F+        GA +WL ELIWREFY  ++  +P 
Sbjct: 248 GPSYLGVHLRFGTVSIRQLAGVAHQLFLQGDA----GAAAWLGELIWREFYFQILVHFPH 303

Query: 301 VC---MGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           V      K F P  +KI+W+   H  Q   AW QG TG+P++DAAM Q+N  G+MHNRLR
Sbjct: 304 VHSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLR 363

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR GE YF   L D +LASNNG WQWA+S+G D+ P+FRIFNP  Q
Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQ 423

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            +RFDP+G FIR +LP+L  +    IHAP +            L   YP P+VDH +A  
Sbjct: 424 SERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEARE 483

Query: 469 HTLNQYYAAK 478
            T+ +Y A +
Sbjct: 484 QTMRRYAAVR 493


>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L  +
Sbjct: 65  SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +  L   P  + + + + +  +  F K  +   +       P   I   G + 
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIE 181

Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +                 +   +  G +NA   LR+F +  + +Y ++R     + TS
Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +S
Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +FD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470
           P+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A       
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480

Query: 471 LNQYYA 476
           + + + 
Sbjct: 481 IFKMWE 486


>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
 gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
          Length = 477

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 464

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 226/488 (46%), Gaps = 34/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       + + W R DLR+ DN ALY      +   I +FI    Q     I +    +
Sbjct: 1   MSKK----IAIHWFRQDLRLADNPALYQVSQADET--ITIFILDKNQ----DIGSASKLW 50

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  SL  K             + +E +     +  +T  ++NR Y+   + RD
Sbjct: 51  LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176
             +++ LQ   I  +  +  L + P          YKVYTPF      + +        +
Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                         S       + +Q I   + IGE  +  IL +F   KV  Y   RD 
Sbjct: 164 FSYLRKLNNSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   TS+LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + 
Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +YP     K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI
Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q +
Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +F+    +IR ++PEL  +P + I  P    +         L  NYP PIVD KK+    
Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456

Query: 471 LNQYYAAK 478
           L  +   K
Sbjct: 457 LQLHNQIK 464


>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia]
          Length = 681

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I   SF+  +L  P  + +     +  ++ F    +      +   LP   I
Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera]
          Length = 681

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 142/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   D I  L         T LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I   SF+  +L  P  + +     +  ++ F    +      +   LP   I
Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
 gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
          Length = 587

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 522

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 184/492 (37%), Gaps = 41/492 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLR+ D++ L+ A       V+ ++I  P     + I+     FI  SL  + 
Sbjct: 7   SIVWFKRDLRVHDHRPLFEASRL--GPVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL + G     H+ +    + E   S        +LF + +       R          
Sbjct: 65  TSLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTK 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +  +         +        + +          + Q        P ++   P  
Sbjct: 121 TQRIQWIEYPQNGVIRRLTTRDGWADRWHERM------KVEQISAPKHIAPILKSQSPTD 174

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247
              + R           +   GE  A   L  F +E+   Y ++   P    TS   LSP
Sbjct: 175 FPKVLRTPPAN----PSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLK---------------EEFVDLLIKPKSGAFSWLNELIWREFYR 292
           YL+ G +S +                      E+             S+L+   W   + 
Sbjct: 231 YLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCHFI 290

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +   PS+                 +   L+AW+ G+TG+P +DA +R LNT  W++ R
Sbjct: 291 QKLEDQPSIEFKPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWINFR 350

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R +  SF   DL +DWR  +++     LD +   +    Q    +G   +   RI+NP 
Sbjct: 351 MRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYSQIQ--MQSGTTGINTLRIYNPI 408

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
            QG+  DP+G FI+ W+PEL  +P +++H P +            L  +YPLPI+DH +A
Sbjct: 409 KQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDHAEA 468

Query: 467 CHHTLNQYYAAK 478
                 ++ A +
Sbjct: 469 IRKARVKFKALR 480


>gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
 gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
          Length = 476

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 225/461 (48%), Gaps = 10/461 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L Q+G      Q    +D    + +         +++ R+YE   +  D  L+  
Sbjct: 60  SLDRALRQQGGRLLVMQ----NDPTIAVPALARAVGAQCVYWTRRYEPAAIACDAALKSA 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + +  +S+  ++   P  +   + Q Y+V+TPF + L  +L          P   +T
Sbjct: 116 LRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMT 175

Query: 186 GPVTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              + +               +   +  GE  A   L +F  E +  Y + RD PA  GT
Sbjct: 176 TDDSTAVEAIGLLPRVRWDAGLAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPARMGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +L  G ++P Q    L+E       + +     +L EL WREF  HL+  +P   
Sbjct: 236 SRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAHHLLYHFPHTT 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +        D+  L  W+QG TG P++DA MRQL   GWMHNR+RM+ ASFL 
Sbjct: 296 DANFDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  +FDP  
Sbjct: 356 KNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            +++ WLPEL+ +P   +H P         +  YP  +VD 
Sbjct: 416 AYLKRWLPELSALPANVLHQPWKHPAALS-ACGYPASMVDL 455


>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
 gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
          Length = 477

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
 gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
          Length = 486

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/483 (22%), Positives = 188/483 (38%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+ D++AL+ A   S  K + ++I  P   +    S R   FI  SL  +
Sbjct: 1   MKVVWFKRDLRLHDHEALHEALSTS-GKTLLLYIFEPSLMKDIHYSQRHFDFIKQSLEAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK L +        Q     +++           + +++ +++  I       L   +L 
Sbjct: 60  QKELQKYHTQILIIQ----GEAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLL 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +         I N        Y    K     L         V  I +    
Sbjct: 116 KEKGIIWNEYITNGVIRGIKNRKNWKEDWYDYMDKDC---LPFNPTPRSFVKYIEIEELE 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
              ++P                G   AL  +  F +E+V  Y      P    +G S+LS
Sbjct: 173 NAFDVPSIKTVHNPNF---QKGGVPTALRYMNSFFEERVQNYSNHISKPELGRKGCSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++ G +S RQ + +  E       K +   F+  + L W+  +        ++     
Sbjct: 230 PYIAWGNISIRQVYTKAWEMHQQGKFKRQISNFA--SRLRWQAHFIQKFEMESTMEFIAV 287

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +    +    +AW  G TG P++DA MR LNT G+++ R+R +  SF    L 
Sbjct: 288 -NKGYRNLIQRVNEKYHKAWITGKTGVPLVDACMRCLNTTGYLNFRMRALVVSFYTHHLF 346

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+    +   Q LD +   +    Q  A  G   +   R++NP       D  GTFI+
Sbjct: 347 QPWQNCSPHLAQQFLDFEPGIHYPQIQMQA--GVTGINTLRVYNPVKNSYEHDADGTFIK 404

Query: 427 HWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  +P ++IH P         L   ++  +YPLPIV+ ++A   + + +++ +K 
Sbjct: 405 KWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKFSSDFFWSMRKN 464

Query: 481 SLL 483
             +
Sbjct: 465 ESV 467


>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
          Length = 589

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +   TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +         K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQMYQQ 490


>gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
          Length = 477

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIV++  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQTLFLYEASKE 466


>gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
          Length = 634

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALTAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L  +
Sbjct: 65  SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +  L   P  + + + + +  +  F K  +   +       P   I   G + 
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIE 181

Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +                 +   +  G +NA   LR+F +  + +Y ++R     + TS
Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +S
Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +FD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470
           P+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A       
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480

Query: 471 LNQYYA 476
           + + + 
Sbjct: 481 IFKMWE 486


>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa]
          Length = 588

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 474

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 157/477 (32%), Positives = 231/477 (48%), Gaps = 16/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A       V+ +F       ++  I++ +  ++   L  +QK
Sbjct: 6   LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G              IE +           +++N   E    +RD+ +++ L+  
Sbjct: 65  RYKQIGSQLLI----MSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPAIRL 184
            I        LL     +  + +             Q       L    L+ L    ++ 
Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T  +   ++P      F   + +    GE  AL  L KF    +  Y EQR+ P++ GTS
Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           QLS  L  G +  R  W + +E   +    +      +W  E+ WREFY+++M  YP + 
Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELE 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G P+    +   W  +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDL +NNGGWQW+AS+G D  P  RIFNP  Q +++DP+G
Sbjct: 360 KDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYDPEG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +IR W+ EL +V TQY+        +   ++ YPLPIVDHKK      + Y   K 
Sbjct: 419 EYIRQWVCELRSVDTQYLVT-GKIPAEEREAIGYPLPIVDHKKQQQLFKDLYREQKN 474


>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
 gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
          Length = 475

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 217/483 (44%), Gaps = 29/483 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN AL  A       VI ++I   E      + A    +++ SL  + +
Sbjct: 10  IMWFRQDLRLHDNPALLTATRL--GPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQ 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L     +F+         +   L+          + +NR YE   + RD++++++LQ  
Sbjct: 68  QLDGHLQLFR-------GPADTLLEQLVQHYDCRTVTWNRCYEPWRINRDRIIKEKLQGL 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184
            I    D+  L   P  +L      Y+++TPF +        ++ +              
Sbjct: 121 GITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVRSPLPRPAEIALAAVTPY 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +         R        +   +  GE  A    + F +E++  Y E RD+PA    S+
Sbjct: 181 SALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPHVSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP +  G +S  Q W+  +    +  +        +  +L WREF    +  +P +   
Sbjct: 241 LSPAIHWGEISVHQLWHDAQAIGHEDALA-------FQRQLAWREFSVTQLFHHPDMDRI 293

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                      W+ D+  L  W+QG TG P +DA MR+L   G MHNR+RM+  SFLVK+
Sbjct: 294 N-LDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVGSFLVKN 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP  QG++FDP G +
Sbjct: 353 LGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKFDPHGDY 412

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            RH++PEL  +P +Y+  P              L   YP P+VD K +    L+ Y   +
Sbjct: 413 TRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALDAYAHMR 472

Query: 479 KQS 481
           + +
Sbjct: 473 QAT 475


>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
 gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
          Length = 435

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 219/479 (45%), Gaps = 49/479 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       V++ W R DLR+ DN  L AA    D  V+ +FI   E   +      +  F
Sbjct: 1   MSKK----VNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTF 55

Query: 61  IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           I+  L +++ +L +  G          +    +   +      + K+F NR YE     R
Sbjct: 56  IFEELQEMRSTLQEDHGSSIAIF----YRTPEKVFKNLISDYEIEKVFTNRDYEPYAKER 111

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D+ + K L    I  + F D V+     ++      Y VYTP++    +   + DL    
Sbjct: 112 DQKIAKILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDLDFHY 171

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                                       +     +    +++         Y ++RD PA
Sbjct: 172 TTRYMDNFYQNSRLPNLSLADIGFKKSSLKVPDYKVTPGLIKD--------YKDKRDYPA 223

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTS+L P+L  G +S RQ      EE             ++L+EL+WREF+  ++  +
Sbjct: 224 VEGTSRLGPHLRFGTVSVRQMIRDADEESNK----------TFLDELVWREFFMQILFHF 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     + F    ++IEW  +    + WKQG TG+P++DA MRQLN  G+MHNR+RM+  
Sbjct: 274 PDTVT-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVG 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++F
Sbjct: 333 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D    +I+ W+PE                     + +YP  +VDHK+A    L  Y  A
Sbjct: 393 DKDKEYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432


>gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 507

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 110/480 (22%), Positives = 187/480 (38%), Gaps = 29/480 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D+ AL  A       V+ ++I  PE W+Q  +S RQ  F+ A L ++
Sbjct: 1   MNVVWFKRDLRLSDHTALARAAKQ--GPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +     + I F         +++E L S   +  +T L+ +++              R  
Sbjct: 59  KTVAQDRSIHFVI----KVGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   + +       + N +    + Y           ++  +  LP     +  P 
Sbjct: 115 QYHHIPWHEPAQHGVVRRLANRSGWAARWYRQ---------MKQPIAELPPVIHSIDEPS 165

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
                P    +       +   G   AL +L  F  E+   Y      P    +  S+LS
Sbjct: 166 DSWPSPADLGWVNAETAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEE-------FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           P+L+ G +S R+ +  ++                  S   S+   L W   +   +   P
Sbjct: 226 PHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDEP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +        +    E   +    +AW+ G TG+P++DA MR L   GW++ R+R +  S
Sbjct: 286 RIEFCNLHPAYEGLRESEFNPAFFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAMVMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L + WR    Y      D +   +    Q    +G   +   RI+NP  QG   D
Sbjct: 346 FASYHLWLHWRQPALYLARMFTDYEPGIHYS--QAQMQSGTTGINTLRIYNPIKQGIDHD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G FIR W+PEL ++   +IH P           NYP PIVD  +A      + Y  +K
Sbjct: 404 PEGVFIRRWVPELMDLDRTWIHTPWLAPSP---PTNYPRPIVDEVQARKAAAEKIYQLRK 460


>gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum]
          Length = 597

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 135/490 (27%), Positives = 226/490 (46%), Gaps = 26/490 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL+
Sbjct: 3   MNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL   G      +    D +++ L       + TK+ +N  Y+   + RD  ++++
Sbjct: 61  HLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEK 117

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + +     +  L   P  I + +   +  + PF    +   ++      P   I   
Sbjct: 118 LVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQ 177

Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           G V   +I               ++   +  G   +   L +F +  + +Y   R     
Sbjct: 178 GKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGG 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPY+  G LS R+ +   + +      +  I  +  A  +L  + +RE+ R+L 
Sbjct: 238 DSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLC 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R+
Sbjct: 298 FSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRV 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + G
Sbjct: 357 IVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLG 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH- 468
           +++DP G +IR WLPEL  +P ++IH P             +L  NYP PI+D   A   
Sbjct: 417 RKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQ 476

Query: 469 --HTLNQYYA 476
               + + + 
Sbjct: 477 LTQAIFKMWE 486


>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309B]
 gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309A]
          Length = 477

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa]
 gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 136/492 (27%), Positives = 220/492 (44%), Gaps = 28/492 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   DS+  L         T+L +N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     ++ L   P  + +   + +  +  F +  +      +   LP   I
Sbjct: 116 KEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    ++   F+   +      +   +  G  NA   L  F    +  Y   R   
Sbjct: 176 ISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     ++  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 LSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  
Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A 
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474

Query: 468 ---HHTLNQYYA 476
                 L++ + 
Sbjct: 475 VRLEEALSEMWQ 486


>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
 gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
 gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
          Length = 477

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
          Length = 642

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALTAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L  +
Sbjct: 65  SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +  L   P  + + + + +  +  F K  +   +       P   I   G + 
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDIVSVVPPWQLIPAEGKIE 181

Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +                 +   +  G +NA   LR+F +  + +Y ++R     + TS
Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGESTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +S
Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +FD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470
           P+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A       
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480

Query: 471 LNQYYA 476
           + + + 
Sbjct: 481 IFKMWE 486


>gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      Q     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIQTH---NTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
           JL354]
          Length = 467

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 230/482 (47%), Gaps = 30/482 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ DN ALYAA       +I VF+   E+            +++ SL  
Sbjct: 3   SPQIVWLRRDLRLADNPALYAAAQA--GPIIPVFVLDDERTGDRKYGDASRWWLHHSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S  +        +     DS+  L     +   + +  NR YE    +    L+K L
Sbjct: 61  LARSFGRHNASLILRR----GDSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182
                 +  D + L+P G+    +   YK+YTPF + +   +       A         +
Sbjct: 117 PEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRDDLPAPETISQPGDL 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +   ++          +   + IGE  A   L     + V  Y E R++P++  T
Sbjct: 177 PPSDDLADWSLLPTNPDWSTEMAKFWSIGEDAAHERLDW-WADHVGEYDEGRNLPSVDQT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQ+SP+L  G +SP Q W+R+K++  D       G  ++ +ELIWR++ ++++  +P   
Sbjct: 236 SQMSPHLHWGEISPVQIWHRMKDKRSD-------GWRTYESELIWRDYAQNVLCQFPRYP 288

Query: 303 MGKPFIP------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                        W      +     L+AW+ G TG+PI+DA MRQL  IGWMHNR+RMI
Sbjct: 289 EESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAIGWMHNRVRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K LL+DWR GE +F   L+D D ASN   WQW A TG DS  + RI  P  Q +
Sbjct: 349 AASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLSQSE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD   ++IR W+PEL ++P   IH P      N    +YP  I+ HK+A    L  Y A
Sbjct: 409 KFDA-ASYIREWVPELADLPDSEIHDPSDKCRPN----DYPAKIIGHKEARERALEAYRA 463

Query: 477 AK 478
            K
Sbjct: 464 MK 465


>gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 511

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 107/464 (23%), Positives = 183/464 (39%), Gaps = 27/464 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLRI D+  L  A   S+A +I ++I  PE W+Q   S R  HFI+  L  +  
Sbjct: 7   IVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCLCDLDS 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++ G            D+ E +    L+  V+ ++ + +       +  +  ++L   
Sbjct: 66  ALAEMGQNLIV----KVGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVEKLCLN 121

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                       P   ++                + + ++         P+ R       
Sbjct: 122 D----GIALHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCRSDVLPAK 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPY 248
           +            I  +   G + A+  LR F   +   Y+     P +     S+LS +
Sbjct: 178 NGPIFCDIP----IGTVQKGGRKQAVADLRSFLNYRSREYLYHISAPDLSEFHCSRLSAH 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMG 304
           L+ G LS R+    + +    L    K        ++ + L WR  +   +   P +   
Sbjct: 234 LAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFGSRLAWRCHFVQKIEDQPEIETH 293

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +    E   +    QAW +G TG+P +DA MR L   GW+  R+R +  SF    
Sbjct: 294 CMHPAFEGLREDEHNDLHFQAWARGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQ 353

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q    DP G+F
Sbjct: 354 LWLDWRVTGDHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPSGSF 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           IR W+PEL NVP ++IH P  W           L  +YP PI++
Sbjct: 412 IRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455


>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
 gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
          Length = 587

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 448

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 205/466 (43%), Gaps = 22/466 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +     DLR+ DN  L AA      +V+ +F+   +  R    S R++ F+  SL 
Sbjct: 1   MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L   G      +       ++ +     +    ++          +RR   L + 
Sbjct: 59  DLDENLRGLGGRLVLRR----GALVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEA 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +       D V+              K +       ++  ++   R       RL  
Sbjct: 115 LSAQRRELRCHDEVVTVLAPGRVTPGGADKDHFTVFTPYLRRWLETGKRPPAAKPRRLRL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   S  PR         D  +P GE        ++    V  Y E+ D  A   TSQLS
Sbjct: 175 PSRLSIGPRPAGGS---ADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLAADATSQLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS R+  +R              G  +++ +L WR+ + H +       + + 
Sbjct: 232 PYLHFGCLSARELADRAGR---------GEGPEAFVRQLAWRD-FHHQVLAARPEAVHED 281

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           + P  +   W++D+  L+AWKQG TG PI+DA MRQL  +GWMHNR R+IT SFL K L 
Sbjct: 282 YRPRGD--RWHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITGSFLTKSLY 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G  +F   L+DGD+A+N   WQW A TG D+ P  R+ NP  Q  R+D  G ++R
Sbjct: 340 LDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRP-NRVLNPLRQADRYDAGGDYVR 398

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            W+PEL  +    +H P    D     L YP PIVD  +A    L+
Sbjct: 399 RWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444


>gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD]
 gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria
           AMMD]
          Length = 525

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 241/495 (48%), Gaps = 23/495 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      ++
Sbjct: 27  SAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWWL 85

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + +L  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 86  HGALAALDAALARHGGHLLLLR----GDAQREIERIVHDTGAAAVYWNRRYAQPQRDADA 141

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175
            L+  L+ R    +S + S+L  P  ++  A   ++V+T + +A+ ++      +    R
Sbjct: 142 ALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVMAPLPEPER 201

Query: 176 SLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P       R       +  P   D+     D      E  A   L  F    +  Y
Sbjct: 202 IAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGY 261

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WREF
Sbjct: 262 ADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELGWREF 321

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWMH
Sbjct: 322 SHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMH 380

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 381 NRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFN 440

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHK 464
           P  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH 
Sbjct: 441 PVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHD 500

Query: 465 KACHHTLNQYYAAKK 479
            A    L+      K
Sbjct: 501 GARRRALDALATLPK 515


>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 455

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 210/472 (44%), Gaps = 20/472 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L          D+V+                +  F     +   +    +L  P      
Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S+     D        +   GE+    ++  +    +  Y +  D  A   TS+LS
Sbjct: 176 DGVASDPLPDRDSVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S  +  +R +E+          G  +++ +L WR+F+  ++A  P       
Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                    W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASFL K L 
Sbjct: 289 ---RPRHDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD +G ++R
Sbjct: 346 VDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  V    IH P      +  +L+YP P+VD  +A      ++  A+
Sbjct: 405 RWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEAR----ARFERAR 452


>gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
           Paraca]
          Length = 474

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 165/476 (34%), Positives = 237/476 (49%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++NR  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184
            I        +L     +   + + YKVYTP+ +  IQ       + L    +     + 
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +P   D  F   +P     GE  A   L  FC   +Y Y E R+ PAI GTS
Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  EL WREFY+  +  +P++ 
Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIMALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473


>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
          Length = 477

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
          Length = 477

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 234/478 (48%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y   RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R     L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIRQELASAPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
 gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
          Length = 477

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
          Length = 456

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 20/471 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV +V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  
Sbjct: 3   SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  +G      +     +          Q     +           +R++ + + L
Sbjct: 62  LDTGLRDRGGRLIVRRGGTAREV----KRVVEQTGADSVHIAAGVSGYAAQREERIREAL 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                     D+V+                +  F     +   +    +L  P       
Sbjct: 118 AGTGCELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAPRTVRVPD 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +     D        +   GE+    ++  +    +  Y +  D  A   TS+LSP
Sbjct: 178 GVSGDALPDRDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSP 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S  +  NR +E+          G  +++ +L WR+F+  ++A  P        
Sbjct: 238 HLHFGTVSAAELANRAREKG-------GPGGEAFVRQLAWRDFHHQVLAARPDASWSDY- 289

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                   W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TASFL K L V
Sbjct: 290 --RPRHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYV 347

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFDP G ++R 
Sbjct: 348 DWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRR 406

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  V    +H P      +   ++YP P+VD  +A     +++  A+
Sbjct: 407 WVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEAR----SRFERAR 453


>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
          Length = 587

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    +    +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP        Y   +++            ++P GE  AL  L +  + K      +
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 455

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 210/472 (44%), Gaps = 20/472 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L          D+V+                +  F     +   +    +L  P      
Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S+     D        +   GE+    ++  +    +  Y +  D  A   TS+LS
Sbjct: 176 DGVASDPLPDRDSVKNLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S  +  +R +E+          G  +++ +L WR+F+  ++A  P       
Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                    W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASFL K L 
Sbjct: 289 ---RPRHDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD +G ++R
Sbjct: 346 VDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  V    IH P      +  +L+YP P+VD  +A      ++  A+
Sbjct: 405 RWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEAR----ARFERAR 452


>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 530

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 122/492 (24%), Positives = 200/492 (40%), Gaps = 31/492 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V + W R  LR+ DN AL AA  NS A++  +FI  P   +   +S  +  F+  SL  +
Sbjct: 4   VSIHWFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLKDL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL +        +        E       + +VT+L +    E    R  +++    +
Sbjct: 63  DESLKKLNSRLFVVR----GRPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAE 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           H V         L     I+        +     + L+ +L              +    
Sbjct: 119 HGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPKLEDMKDCC 178

Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQ----NALHILRKFCKEKVYYYVEQ 233
           TP       +Y   + +            ++P GE          +++      +   E 
Sbjct: 179 TPVKEDHDLEYGTPSYEELGQDPKTAGPHLYPGGETEALARLDLHMKRTSWVCNFKKPET 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                   T+ LSPY+  G LS R  W +L E +            S   +L+WREF+  
Sbjct: 239 HPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGRK--HSDPPVSLHGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             A  P+    +   P   +++W+ +   L+AW++G TG+P IDA M QL T GW+H+  
Sbjct: 297 AGAGIPNFDRMEN-NPVCVQVDWDNNQEYLRAWREGQTGYPFIDAIMTQLRTEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N   WQW +++      +FR+++P 
Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQWLSASAFFHQ-FFRVYSPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L      YI+ P              +  +YP PIV+H+K 
Sbjct: 415 TFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEKV 474

Query: 467 CHHTLNQYYAAK 478
               L +  AA 
Sbjct: 475 YKRNLERMKAAY 486


>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 428

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 210/470 (44%), Gaps = 45/470 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A  NSD  ++ +FI       Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK L +KG          +    E  +    + +V  ++ N  YE    +RDK L +   
Sbjct: 60  QKKLQEKGKSLAVF----YGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFA 115

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  I   +  D V+     +     + Y VYTP+     +   Q  L++           
Sbjct: 116 NHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENYLDKIV 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P          F+                     +  +  Y   R+ P++  TS L  
Sbjct: 176 THPYPFLSLESIGFETSK---------ITVASYDISENLIDNYEATRNFPSLNKTSFLGI 226

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +S R+      +   +          ++  ELIWREF+  ++  +P     K F
Sbjct: 227 YLRFGAVSVRKMMQEAIKSKNE----------TFFKELIWREFFMQILWHFPHTI-NKSF 275

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I W     L Q W QG TG+P +DA MR+LN  G MHNR+RMI ASFL K LL+
Sbjct: 276 KEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLI 335

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD    +I+ 
Sbjct: 336 DWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PEL                    + +YP PIV+HK A    L  Y  A
Sbjct: 396 WIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426


>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
 gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
          Length = 478

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 237/482 (49%), Gaps = 21/482 (4%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS   ++W R DLR++DN AL  A  NSD K++ VF    +Q  +      QS F +AS+
Sbjct: 1   MSKTSVMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQPT-VNQSSF-FASV 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q++KSL ++ I           D    +       R      +      E  +      
Sbjct: 58  QQLKKSLKKQNINLYVFYGE-LKDMFNHIKKQLPHWRDLYFNRDEHGYGGERDQVITKYC 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + +  +   +  D  L     I       Y+V+TP+ K  +  +    +        +  
Sbjct: 117 QEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTNISQEH 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             V+        D              IGE  A  IL  F + K+  Y + RD+P++  T
Sbjct: 177 LTVSTLEQDSMLDALIDEKHSYAYVDQIGEDKARKILSDFIENKLTQYDQNRDVPSLDAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  +  +K+           G  +++ EL WR++Y  + A +P   
Sbjct: 237 SHLSRYLRTGEISIRVVYEGIKQAPDS------DGRSTFIKELCWRDYYNMIYATHPQQN 290

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                 P   +I W  D      W+ G+TGFPI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 291 ES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRLRMIVASFLT 349

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL++W+ GE YF  +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FDPQG
Sbjct: 350 KDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDPQG 409

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FI+ ++PEL  +P   IH P+     +       +  +YP PIV+HK A  + +  Y  
Sbjct: 410 LFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTARINAIAAYEK 469

Query: 477 AK 478
           +K
Sbjct: 470 SK 471


>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
 gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
           87.22]
          Length = 453

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 205/468 (43%), Gaps = 21/468 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V    DLR+ D+  L AA   S  +V+ +F+   +       +  +  F+   L 
Sbjct: 1   MNVSVVLFTCDLRLHDHPPLRAALDGS-RQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLE 124
            +   L ++G            D +E +     +    ++    +               
Sbjct: 60  DLDTGLRERGGRLVVRS----GDVVEEVCKVAAEADADEVHLAADVSAYAQRREERLRRA 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +   +      +  + PG++L  +   + V+TP+     +  ++    +   P    
Sbjct: 116 LEAEGVRLHVHATVTSAVDPGAVLPASTDHFAVFTPYFGHWSRQRLR---EASAAPRAVH 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S               +   GE         + +  +  Y ++ D  A   TS+
Sbjct: 173 VPDGVGSEELPSRAGLSGVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRHDDLAGDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LSP +  +R +            GA +++ +L WR+F R ++A  P+    
Sbjct: 233 LSPHLHFGTLSPVELVHRSRRAGG-------PGAEAFVRQLAWRDFNRQVLAARPAAAKA 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W       +AW+ G TG+P++DAAMRQL   GWMHNR R++TASFL K 
Sbjct: 286 DY---RAKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKT 342

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  RI NP  Q KR+DP G +
Sbjct: 343 LYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRP-NRILNPVTQAKRYDPDGEY 401

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           +R W+PEL ++    +H P      +  +L+YP P+V+  +     L 
Sbjct: 402 VRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVELAEGRERFLR 449


>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2050

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/480 (26%), Positives = 195/480 (40%), Gaps = 33/480 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +   ++  VFI  P       +   +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALMAALRDCK-ELYPVFILDPH-LHNKSVGINRCRFLIGALRDLD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL          +        E       Q +VTKL Y    E   + RD+ +    + 
Sbjct: 63  LSLRNLNSRLFVVR----GKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEE 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +   +  S  L     +          T      I   +    R +  P++     V+
Sbjct: 119 SGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGVS 178

Query: 190 PSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              +                  P    +  FP GEQ AL  L    K+  +    ++   
Sbjct: 179 TPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQT 238

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +       T+ LSPY++ G LS R  W RL + +        +   S   +L+WREF+  
Sbjct: 239 SPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGKK--HSAPPVSLHGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +++W+ DS  L AW++  TGFP IDA M QL   GW+H+  
Sbjct: 297 ASVGIPNFNKMAD-NPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLDGD A N G WQW +++      +FR+++P 
Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ-FFRVYSPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P QYI+ P              +  +YP PIV H++ 
Sbjct: 415 AFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKHEEE 474


>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
          Length = 477

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 652

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 227/489 (46%), Gaps = 26/489 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  SL+ 
Sbjct: 5   SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL   G      +  +   +IE L         TKL YN  Y+   + RD  ++++L
Sbjct: 63  LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  +S++  +L  P  I +     +  +  +    +   ++      P   +   G
Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAG 179

Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   +I                +   +  G  NA   L +F ++ ++ Y ++R      
Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGN 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+  + ++ +      +     +     +L  +  RE+ R+L  
Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+HNR+R+I
Sbjct: 300 NFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG 
Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469
            +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++   A    
Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478

Query: 470 --TLNQYYA 476
              +   + 
Sbjct: 479 TEAIFMMWE 487


>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
 gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
          Length = 479

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/483 (33%), Positives = 235/483 (48%), Gaps = 19/483 (3%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS + L W R DLRITDN  L  A  +S +KV+ VF   P    +  ++  +  ++  SL
Sbjct: 1   MSDLVLFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q+   Q G      +     D ++ +           +F+N   E     RD+ +  
Sbjct: 60  QELQQRYVQAGSQLLILR----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIA 115

Query: 126 RLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            L+ + I       D +L  P  I + +   Y VYTPF K          + +L      
Sbjct: 116 TLKDKGIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGL 175

Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                  +        P       F   D +   GE  A   L +F  + +  Y EQR+ 
Sbjct: 176 TEAEQELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNF 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           P + GTSQLS  L  GV+  R  W   L+        +  +   +W  EL WREFY+H M
Sbjct: 236 PGVNGTSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAM 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +  G  +    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR RM
Sbjct: 296 YNFPELADG-AYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRM 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 355 IVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++FDP   +IR W+PEL ++ T+Y+            ++ Y  PIVDH+K       +Y 
Sbjct: 414 QKFDPDAEYIRQWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQ 472

Query: 476 AAK 478
             K
Sbjct: 473 QQK 475


>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 474

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 164/476 (34%), Positives = 238/476 (50%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184
            I        +L     +   + + YKVYTP+ +  IQ       + L    +     + 
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +P   D  F   +P     GE  A   L  FC   +Y Y E R+ PAI GTS
Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  EL WREFY+  +  +P++ 
Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIIALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 IG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473


>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
          Length = 587

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +T+L      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii]
          Length = 586

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +    +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      Q     ++I  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSDLTLIQTH---NTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +  L   P  I     + +  +  + K  +   +++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  +L +F ++++  Y + 
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP +QG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACH 468
             A  
Sbjct: 475 DTARE 479


>gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/488 (26%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA M++L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
          Length = 477

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 235/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKA   A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 716

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica]
 gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica]
 gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica]
 gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica]
 gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica]
 gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica]
 gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 PKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
 gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
          Length = 477

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSTC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
          Length = 641

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 226/489 (46%), Gaps = 26/489 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  SL+ 
Sbjct: 5   SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL   G      +  +   +IE L         TKL YN  Y+   + RD  ++++L
Sbjct: 63  LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  +S++  +L  P  I +     +  +  +    +   ++      P   +   G
Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEFVSLLPPWRLVPAAG 179

Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   +I                +   +  G  NA   L +F ++ ++ Y + R      
Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXRLKVEGN 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+  + ++ +      +     +     +L  +  RE+ R+L  
Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+HNR+R+I
Sbjct: 300 NFPS-THERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG 
Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469
            +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++   A    
Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478

Query: 470 --TLNQYYA 476
              +   + 
Sbjct: 479 TEAIFMMWE 487


>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
 gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
          Length = 473

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L      L         ++  EL WR+ + +++         +   
Sbjct: 233 LRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
          Length = 586

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
          Length = 616

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/498 (24%), Positives = 197/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R           T+ LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+ +  A            P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FF-YTAATNNPCFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 541

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/479 (20%), Positives = 174/479 (36%), Gaps = 24/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR++D+ AL  A       V+ +++  PE W+Q   SARQ +F+  ++ ++
Sbjct: 38  MQVVWFKRDLRVSDHPALAQASE--VGPVLPLYVVEPELWQQPDASARQWNFVAETIAEL 95

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L + G            +    L     +  +  L+ + +   +   +         
Sbjct: 96  RSDLGELGQPLIVR----VGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQVAAWC 151

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAIRLTG 186
                +  +         +        +        +     L   D     +P  R  G
Sbjct: 152 RDHGVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALKHIDTEPGYIPTGRDLG 211

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 + R        +D +     +      R+            R          LS
Sbjct: 212 LRDDQCVGRQAGGRAAGLDRLNSFLTRRGERYQREMSSPLEGAVACSR----------LS 261

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIK---PKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           PYL+ G LS R+ W   + +   L       +    S+   L W   +   +   P +  
Sbjct: 262 PYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLEDEPRIEF 321

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +        D+ LL AW  G TG+P +DA MR L   GW++ R+R +  +    
Sbjct: 322 ENLHRLYDGLRPRAPDAELLGAWSNGETGYPFLDACMRSLQATGWLNFRMRAMVMATASY 381

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR   E+      D +   +    Q    +G   +   RI+NP  QG   DP+G 
Sbjct: 382 HLWLDWRAPGEHLARMFTDYEPGIHWS--QVQMQSGTTGINTVRIYNPVKQGYDQDPEGL 439

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL  +  Q++H P    +  D+    YP  + DH  A      + +  ++ +
Sbjct: 440 FIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERVFDHLAAAKAARERVWGVRRSA 498


>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
 gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
          Length = 473

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L      L         ++  EL WR+ + +++         +   
Sbjct: 233 LRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
 gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
          Length = 473

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L      L         ++  EL WR+ + +++         +   
Sbjct: 233 LRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 442

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 157/481 (32%), Positives = 238/481 (49%), Gaps = 49/481 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           M   T   + + W R DLR+ DN  LY A   S   V+ +FI            +  +  
Sbjct: 1   MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI+ ++ +++++L QK           +    +  ++      + +++ N  YE     R
Sbjct: 60  FIHKAVSEIRQALRQKEADIMV----EYGFPEKIWENLVAGHDIAEVYTNTDYEPYATDR 115

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           DK + + L+ + I  K+  D V+     IL+     Y V+TP+ +A  Q L    L+S P
Sbjct: 116 DKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLKSYP 175

Query: 179 VPAI-RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                R       S +P   +  F+  D  FP                 +  Y ++RD P
Sbjct: 176 TKKYFRHFHQWHGSALPSLREMGFEKTDYDFPP---------ADVDDTLLKNYAKERDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++ TS++  +L  G +S R    + +               ++LNELIWR+FY+ +++ 
Sbjct: 227 AMEATSRIGVHLRFGTVSIRDLARQARAHS-----------DTFLNELIWRDFYQQILSN 275

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V  G  F    + I+W  D    + W +G TG+P++DA MRQLN IG+MHNR+RM+T
Sbjct: 276 FPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVRMVT 335

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR+GE YF  +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP  Q ++
Sbjct: 336 ASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQAEK 395

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYA 476
           FDP+  +I+ W+PE                       + YP P+VDHK+A    L  Y  
Sbjct: 396 FDPKMEYIKKWVPE--------------------FGTDEYPEPMVDHKEARERCLQAYKT 435

Query: 477 A 477
           A
Sbjct: 436 A 436


>gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 465

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 145/482 (30%), Positives = 218/482 (45%), Gaps = 47/482 (9%)

Query: 1   MKATTAMS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57
           +   T MS   V++ W R DLR+ DN     A    D  V+ +FI   E   +      +
Sbjct: 24  LSYATTMSSNKVNIFWFRRDLRLDDNVGFLEALK-GDLPVLPIFIFDKEILDKLPKDDAR 82

Query: 58  SHFIYASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
             FI+ +L +++ +L  +            +D   +          +  +F NR YE   
Sbjct: 83  VTFIFETLQKMRSTLQDEHASSL----AMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYA 138

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RD+++   L+   I  K+F D V+     ++      Y VYTPF+    +        
Sbjct: 139 KERDEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDL 198

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           ++   +  L   +  S +P               +                +  Y + R+
Sbjct: 199 TIHYTSQHLNNLIEHSRLPNLSLSDMGFEKSSIEV-------PEYDVTPTLIQNYEDTRN 251

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA  GTS L P+L  G +S R+   +   E  +           + +ELIWREF+  ++
Sbjct: 252 FPAQDGTSHLGPHLRFGTVSVRKMMKKAIAETNE----------IFWSELIWREFFMQIL 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     K F    ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+RM
Sbjct: 302 FHFP-HTKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVRM 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K LL+DWR GE YF  +LLD +++SN G WQWAA +G D+ PYFRIFNP  Q 
Sbjct: 361 LVASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQV 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            +FD Q  +I  W+PE         H           + NYP  +VDHK+A    L  Y 
Sbjct: 421 DKFDKQKEYISKWIPE---------HD----------TDNYPEKMVDHKEARERCLKTYK 461

Query: 476 AA 477
            A
Sbjct: 462 EA 463


>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus]
          Length = 587

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + RL + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum]
 gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum]
          Length = 598

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/490 (27%), Positives = 226/490 (46%), Gaps = 26/490 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL+
Sbjct: 3   MNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL   G      +    D +++ L       + TK+ +N  Y+   + RD  ++++
Sbjct: 61  HLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEK 117

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + +     +  L   P  I + +   +  + PF    +   ++      P   I   
Sbjct: 118 LVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQ 177

Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           G V   +I               ++   +  G   +   L +F +  + +Y   R     
Sbjct: 178 GKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGG 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPY+  G LS R+ +   + +      +  I  +  A  +L  + +RE+ R+L 
Sbjct: 238 DSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLC 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R+
Sbjct: 298 FSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRV 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + G
Sbjct: 357 IVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLG 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH- 468
           +++DP G +IR WLPEL  +P ++IH P             +L  NYP PI+D   A   
Sbjct: 417 RKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQ 476

Query: 469 --HTLNQYYA 476
               + + + 
Sbjct: 477 LTQAILKMWE 486


>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 488

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 165/487 (33%), Positives = 239/487 (49%), Gaps = 17/487 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +   + L+W R DLR+ D+ AL  A     AK++ VF    +  +   ++  +  +
Sbjct: 10  MSDQSDHPLILLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVAY 68

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +Q    + G      Q     D ++ L           + +    E    +RD
Sbjct: 69  LLGCLQSLQDHYQRLGSELLVFQA----DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124

Query: 121 KLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178
             + + L+ R +  + +    +  PG +L  A   Y VYTPF K   Q    + + +   
Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKD 184

Query: 179 -----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVE 232
                        P+ P  IP+  D  F    P+    GE+ A   L  F    +  Y +
Sbjct: 185 LQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQ 244

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFY 291
            R+ PA+ GTSQLS  L  GV+SPR  W    E +     +       +W  EL WREFY
Sbjct: 245 NRNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFY 304

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H +  +P++  G P+    ++  W ++    QAW +G TG+PIIDAAM QLN  GWMHN
Sbjct: 305 QHCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHN 363

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL+KDL+++W+ GE YFM  L DGDLA+NNGGWQW+AS+G D  P  RIFNP
Sbjct: 364 RCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNP 422

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q ++FDP+G +IR WLP+L    T  +         +  S+NYP PIVDH +      
Sbjct: 423 HTQAQKFDPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFK 481

Query: 472 NQYYAAK 478
            +Y   K
Sbjct: 482 RRYQLVK 488


>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
 gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
          Length = 616

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/498 (24%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R           T+ LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P         P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMD-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 510

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/473 (24%), Positives = 179/473 (37%), Gaps = 32/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + LVW + DLR+ D+ AL AA       V+ ++I  P        +AR   FI   L+
Sbjct: 1   MYIQLVWFKRDLRLHDHPALSAAAAR--GPVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L++ G            +++E LD       +  ++ + +             +R
Sbjct: 59  ELRANLARLGQPLVVR----VGEAVEVLDHLVSTWPIEAIWAHEETGNLLSYARDRAVRR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                    +  +  +P   +  + +          +A  +  + A     P     L  
Sbjct: 115 ---------WARARGIPFHELPQNGVVRRLPSRDEWQARWEERMAAAQAQPPSALPPLAI 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGTSQ 244
                        P   +    P GE  AL  L  F   +   Y       + A +G S+
Sbjct: 166 DPGTIPTADELSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGCSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ G LS R      +    +L   P      W+  L   E   H    +      
Sbjct: 226 LSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKLED 285

Query: 305 KP-------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P          +    E N    LL AW  G TG+P +DA MR L   GW++ R+R + 
Sbjct: 286 EPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRAML 345

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF+  DL   WR        + +D +   +    Q     G       RI+NP  QG  
Sbjct: 346 VSFVAYDLWQHWREPALILARRWIDYEPGIHYS--QMQMQAGTSGNRTIRIYNPVKQGID 403

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464
            DP+G FIR W+PEL +VPT YIH P              +  +YP PIVDH+
Sbjct: 404 HDPEGIFIRRWVPELAHVPTPYIHTPWLLDRHGQERAGCRIGRDYPAPIVDHE 456


>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
 gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1
 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 588

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + L+  +   ++ +  + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
          Length = 586

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
 gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
          Length = 475

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 226/482 (46%), Gaps = 23/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLR+DLR+ DN AL  A H   A +  V++   E      +      +++ SL  +
Sbjct: 7   TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRL 127
              L  KG      +      + + + S   Q     LF+NR+Y   E   D    E   
Sbjct: 66  AAVLEAKGSRLVLRR----GKAADVISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEWAA 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184
            + +   SF  ++L  P +I   A   YKVY+PF +A +      D   +P         
Sbjct: 122 GNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDIPKDLPEPAAS 181

Query: 185 ------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +  +    +          +   +  GE+ A+  L  F    +  Y   R+IP 
Sbjct: 182 GRGLPASDSLGSWKLLPTSPDWSGGLAETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +GTS+LSPYL  G +SP + W  ++        +  +    + +EL WREF  HL+   
Sbjct: 242 TEGTSRLSPYLRFGEVSPFRVWREIRRRHPR---QVPADVGIFRSELGWREFNWHLLYHN 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        + +    +     L AW+QG TG+P++DA MRQL   GWMHNR+RM  A
Sbjct: 299 PELATRSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMAAA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL DWR+GE++F   L+D D A+N   WQW A +G D+ PY+RIFNP  Q K+F
Sbjct: 359 SFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQSKKF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G ++R ++PE+  +  + IH P +          YP P+V+  ++    L+ Y   K
Sbjct: 419 DAGGDYLRRFIPEIAGLEGKAIHEPWTAE-----PDGYPQPLVELPESRERALDAYQKLK 473

Query: 479 KQ 480
             
Sbjct: 474 DS 475


>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
          Length = 1043

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/493 (23%), Positives = 189/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL      +      VF+  P       +   +  F+   L  + +
Sbjct: 109 VHWFRKGLRLHDNPALREGVRGA-TSFRCVFVIDPWFAGSSNVGINKWRFLLQCLDDLDR 167

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 168 NLRKLNSRLFVIR----GQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCKEL 223

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     +A+I ++         +    + G  T
Sbjct: 224 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGGATT 283

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 284 PLYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 343

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 344 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 401

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+++S  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 402 ATKNPTFDKM-AGNPICVQIPWDRNSEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 460

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 461 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 519

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A 
Sbjct: 520 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIAS 579

Query: 468 HHTLNQYYAAKKQ 480
              + +     + 
Sbjct: 580 RANMERIKQVYQH 592


>gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/
           protein homodimerization/ protein kinase [Arabidopsis
           thaliana]
 gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor; AltName: Full=Protein BLUE LIGHT
           UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL
           4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2
 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana]
 gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana]
          Length = 681

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
          Length = 586

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
 gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
          Length = 434

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 139/471 (29%), Positives = 213/471 (45%), Gaps = 43/471 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV++ W R DLR+ DN+ L  A   +   V+ +FI   E          +  F++  L +
Sbjct: 4   SVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRLQE 62

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  + + +G     +        +E          V ++F NR YE     RD+ + + 
Sbjct: 63  LRSRMQENQGSSLAIYH----GKPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQVGQW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + I        ++     +        V         + + +    +    A +L  
Sbjct: 119 LSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATFDSAGQLGN 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  S +P      F       P+              + +  Y + R+ PA +GTS+L 
Sbjct: 179 LIAHSRLPNPDLADFGFERSAIPV-------PDYDMGGKLIDAYEDNRNYPAREGTSRLG 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S RQ   +  E              ++ NELIWREF+  ++  +P     + 
Sbjct: 232 PHLRFGTISIRQALGKALES----------SNETFWNELIWREFFMQILWHFPRTVH-EA 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    ++I W  D    + W++G TGF ++DA MRQLN  G+MHNR+RM+TASFL K LL
Sbjct: 281 FRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASFLCKHLL 340

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNP  Q  +FD   ++IR
Sbjct: 341 IDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKSYIR 400

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+PE                     + +YP  +VDHK A    L  Y AA
Sbjct: 401 EWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432


>gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
 gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
          Length = 444

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 145/469 (30%), Positives = 220/469 (46%), Gaps = 29/469 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R DLR+ D   L AA  ++  + + +F+         G S RQ   ++A+L  +   
Sbjct: 2   VWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLGPAG-SPRQDQ-LFANLTALDHQ 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  K +V +        D  + +          ++  +  Y     RRD      +  +V
Sbjct: 59  LDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDA----AVAEQV 107

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              +      + PG +       YKV+TP+ +  +++  +    +     +R   P    
Sbjct: 108 ELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPASTD-AQTVRWFDPSDKE 166

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S  L  
Sbjct: 167 GGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLKY 226

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR     L +   D       GA ++  +L WR+FY  ++   P          + 
Sbjct: 227 GTIHPRTMLADLSKRLGD-------GAQAYRRQLAWRDFYADILFQRPDSARKNYDDKFD 279

Query: 312 EKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                          AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVKDL + W
Sbjct: 280 RLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHIPW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +FMS L+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT++R W+
Sbjct: 340 WRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRRWV 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           PEL +VP + +H       K    ++YP PIVDH       L +Y   K
Sbjct: 400 PELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 443


>gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2
           [Canis familiaris]
          Length = 587

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
 gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
 gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1
 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
 gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
 gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
 gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
 gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
 gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
 gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
          Length = 586

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 496

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/478 (23%), Positives = 188/478 (39%), Gaps = 34/478 (7%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS + +VW + DLR  D++ L+ A       V+ +++  PE W+Q   S+RQ  F   SL
Sbjct: 1   MSALQIVWFKRDLRTVDHRPLFEASKC--GPVLPLYVVEPELWQQPDSSSRQWLFCRESL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +Q++L++ G      +     D  + L+    Q  +  L+ + +   +   +      
Sbjct: 59  IDLQRALAEFGQPLVVRR----GDVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVA 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               +      +         + +      +  T   + + Q L      +   P     
Sbjct: 115 AWAKQHGIPWTEIPQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALPRLADLDPGAIPD 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ- 244
            P                       G +      R F  ++V  Y      P    T   
Sbjct: 175 LPHGSMAPDPCPHRQL--------GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCS 226

Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS YL+ G LS R+                  G  S+ + L W   +   +   PS+  
Sbjct: 227 RLSAYLTWGCLSMREVLQ-------QSRTMQGRGVNSFGSRLHWHCHFIQKLEDEPSIEF 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I  + +   LQAW +G TG P +DA MR L   GW++ R+R +  SF   
Sbjct: 280 -QDFHPLMRGIRDS-NQDHLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG+  DP+G 
Sbjct: 338 NLWLPWRQSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGRDHDPEGR 395

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIRHW PEL  VP  YIH P       +L    P PIVD   +     ++ +A ++ +
Sbjct: 396 FIRHWCPELREVPAIYIHEPW------ELGGGMPAPIVDVTTSMQAAKDRIWAVRRSA 447


>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
 gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
          Length = 431

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 220/473 (46%), Gaps = 48/473 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V   W R DLR+ DN  L+ A   SD  VI +FI   +       +  +  FIY S
Sbjct: 2   TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++   L+         +      +     S   +  +  +F+N+ YE   ++RD  + 
Sbjct: 61  LQKINNELNTFESSILIKK----GKTTAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAIC 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L+   + C SF D V+     I       Y VYTP++   ++              + 
Sbjct: 117 SLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEK----------YHFLG 166

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  S++   F     +   +  IG + +   +      ++  Y E RD PA+  TS
Sbjct: 167 TVPECDSSSMHSNFAKTKFSFPDLTEIGFKRSTIKVLPHNLTQIANYKETRDFPALDSTS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S R+  N    +             ++L+ELIWREF+  ++  +P+   
Sbjct: 227 YLSPHLRFGTVSIRKLVNWANRKNQ-----------TFLSELIWREFFIQILFSFPNCVN 275

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RM+ ASFL K
Sbjct: 276 HN-FKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVASFLCK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL++W+ GE YF  +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+FD +G 
Sbjct: 335 HLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKGE 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +IR W+PE                        Y  P+VDH  A   T+  Y A
Sbjct: 395 YIRKWIPE--------------------FDFGYAEPMVDHAFARDRTIATYKA 427


>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
 gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
          Length = 621

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 195/487 (40%), Gaps = 23/487 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67
            ++W R  LR+ DN AL  AC  + A V  VFI  P   +Q  + +   + +F+  SL  
Sbjct: 7   SILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRD 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  S   +G      +        E       + R+T+L +    E     RD  ++   
Sbjct: 66  LDASFRSRGSRLLVLR----GKPEEVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLA 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +      S  L  G   +     +           +       R  P      +  
Sbjct: 122 DEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRGPACENAPSTD 181

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL------RKFCKEKVYYYVEQRDIPAIQG 241
              + +P + +  F         G +                                  
Sbjct: 182 AATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADFKKPDTDPAAFERPA 241

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPY+  G LSPR    RL E +       +    S   +L+WREF+  + A  P+ 
Sbjct: 242 TTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQPPV-SLRGQLLWREFFYTVGAHTPNF 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P  ++I+W+ D  LL AW++  TGFP IDA M QL   GWMH+  R   A FL
Sbjct: 301 -HRMDGNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWMHHLARHSVACFL 359

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G + F   L+D D   N   W W +++   S  YFR+++P   GK++DP
Sbjct: 360 TRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPISFGKKYDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIR +LP L ++P++YI+ P +            +  +YP P+VDH       + + 
Sbjct: 419 EGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRAGCVIGRDYPHPVVDHALVSKQNIARM 478

Query: 475 YAAKKQS 481
            AA + +
Sbjct: 479 AAAYRSN 485


>gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus]
          Length = 455

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 206/472 (43%), Gaps = 20/472 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +     F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L          D+V+                +  F     +   +    +   P      
Sbjct: 116 LADSGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVP 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S+     D        +   GE+    ++  +    +  Y +  D  A   TS+LS
Sbjct: 176 DGVASDPLPDRDCVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S  +  +R +E+          G  +++ +L WR+F+  ++A  P       
Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                    W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASFL K L 
Sbjct: 289 ---RPRHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD +G ++R
Sbjct: 346 VDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  V    IH P      +   L+YP P+VD  +A      ++  A+
Sbjct: 405 GWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEAR----ARFERAR 452


>gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 690

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 135/487 (27%), Positives = 224/487 (45%), Gaps = 25/487 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 14  NIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 72  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I     ++ L   P  + +   + + ++  F +  +      +   LP   I      
Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 188

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 189 KCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 309 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FD
Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470
           P G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       
Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEA 487

Query: 471 LNQYYAA 477
           L+Q +  
Sbjct: 488 LSQMWQL 494


>gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK]
 gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
           PYR-GCK]
          Length = 449

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 229/475 (48%), Gaps = 30/475 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   ++W R DLR+ D  AL AA    D  V+A ++  P         +R+  ++Y +L 
Sbjct: 1   MP-AVLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATG--GSRRLQYLYDALR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++SL  + ++          D +  +         + +  +  +    +RRD+ +   
Sbjct: 57  DLRESLDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDA 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G +       YKV+TPF  A  Q+  +    S   P+     
Sbjct: 110 LGDVELVATGSPYLVSP-GRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESG-PPSAHWLD 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   +  P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S
Sbjct: 168 PADVAGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMS 227

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     L             GA ++L EL +R+FY  ++A +P       
Sbjct: 228 AHLKFGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRSTWWNW 278

Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  E  +        +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKD
Sbjct: 279 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G +
Sbjct: 339 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 398

Query: 425 IRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++ W+ EL +V  +  +H         D   +YP PIVDH +     L +Y + +
Sbjct: 399 VKRWVEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 448


>gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
 gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
          Length = 434

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 134/473 (28%), Positives = 204/473 (43%), Gaps = 47/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   + A   ++  V+ +FI   E   +   +  +  FI+ +L  
Sbjct: 4   TVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETLQN 62

Query: 68  VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++++L  +            +   I+   S      +  ++ N  YE     RD  ++  
Sbjct: 63  MRQTLQDENNSSL----AMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQSF 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I  K++ D V+     ++    + Y VYTP+ K         DL+          
Sbjct: 119 LEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTFLNN 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                                    +  Y   R+ PA   TS+L
Sbjct: 179 LIENTRLPNLSLSDIGFKKSSQD--------IKDYTVTPTLIQEYEATRNFPAKDTTSRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E  +           +  ELIWREF+  ++  +P      
Sbjct: 231 GPHLRFGTVSVRKMVKKATAENNE----------IFWQELIWREFFMQILWHFPD-THKD 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I+W  ++   +AW  G TG+P++DA MRQLN  G+MHNR+RM+  SFL K L
Sbjct: 280 AFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L D D+ASN G WQW A +G D+ PYFRIFNPT Q  +FD    +I
Sbjct: 340 LIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDKKYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAA 477
           + W+PE                       + YP  IVDHK+A    L  Y  A
Sbjct: 400 KQWIPE--------------------FGTDKYPEKIVDHKEARERCLKVYKDA 432


>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
 gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
          Length = 464

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 196/465 (42%), Positives = 261/465 (56%), Gaps = 11/465 (2%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R  DN AL AA  N      A+F+ +  QW++H  +  Q   I   L++++  L Q  I 
Sbjct: 2   RTIDNPALQAAVEN-QQPTFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNIP 60

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
                   F +    + +   +  V  LF N++YE +E  RD  + + L +   C  FD 
Sbjct: 61  LIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESLLNTN-CSFFDA 119

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
             +LP G+I+N   Q YKV+TPF+KA   +  Q            L  P     +    D
Sbjct: 120 KCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNND 179

Query: 199 YPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
             F  +          +    + ILR+FC++KV  Y   RD P IQGTSQLSPYL+IG +
Sbjct: 180 DSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGAI 239

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           S +QC        ++   +   G   WL+ELIWREFY HL+ FYP++   + F+ + + I
Sbjct: 240 SAKQC---ALRLHLEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKYI 296

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           EW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE+
Sbjct: 297 EWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQ 356

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+FD   TFI+HWLPEL  
Sbjct: 357 YFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELKA 416

Query: 435 VPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +  + IH P+        S NYP  IVDH +     +  Y  AK+
Sbjct: 417 LSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 459


>gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 681

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
 gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
          Length = 459

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 214/473 (45%), Gaps = 18/473 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ D+  L+AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            + ++ +     +    ++        +  RR++ L + 
Sbjct: 60  DLDAGLRDRGGRLVIRS----GEIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L          D+V+              K +        ++  Q  LR+       +  
Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFAVFTPYFRSWSQVGLRTPFGAPRAVRM 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245
           P  P++ P         +      G +          + +     E R D  A   TS+L
Sbjct: 176 PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRRQGLGRYEDRHDDLAGDATSRL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LSP +  +R +            GA +++ +L WR+F+  ++A  P+     
Sbjct: 236 SPHLHFGTLSPTELIHRARSAGGA-------GAEAFVRQLCWRDFHHQVLAARPAASHAD 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                         +  ++AWK+G TG+P++DAAMRQL   GWMHNR R++TASFLVK L
Sbjct: 289 YRTRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNRGRLLTASFLVKTL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            VDWRIG  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP +Q KR+D  G ++
Sbjct: 349 YVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRP-NRVLNPVVQAKRYDTDGAYV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  +    +H P     +   +L+YP P++D  +     L ++  A+
Sbjct: 408 RRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLDLSEG----LARFKDAR 456


>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
 gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
          Length = 468

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 159/477 (33%), Positives = 239/477 (50%), Gaps = 23/477 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   +VW R D R+ D+ AL  A         K++  F   P   ++         + + 
Sbjct: 4   MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDPYFAKERTY---HHEYFFQ 60

Query: 64  SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           ++ Q ++ L    GI           D  +       +  +  +F+N+        RD+ 
Sbjct: 61  TVEQFRQMLRHLYGIHVHILH----GDIDDVFVRLISRTHMNAIFFNKDEVGRGKERDEY 116

Query: 123 LEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--- 178
           +   LQ   I     D   L     +L      YKVYTP+ +A  +   +  L       
Sbjct: 117 VRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDLL 176

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +    P++  +      +  Q         EQ+ALH+L++F    + YY  QRDIPA
Sbjct: 177 RAHMLQITPLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDIPA 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LSP+L  G LS R  ++ + ++F +          +++ EL WR+ + H++  +
Sbjct: 237 VSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNG---YDEAVETYIKELAWRD-FYHMIYAH 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 + FI     + W++D    +AWK+G TGFP++DA MRQL   GWMHNRLRMI A
Sbjct: 293 FPFTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAA 352

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KD L+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q K+F
Sbjct: 353 SFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKF 412

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP GT+IR ++ EL + P+ YIH P     K+++  +YP P VDH+      +  + 
Sbjct: 413 DPDGTYIRTYVQELASFPSLYIHEPW----KSNIQTDYPAPTVDHQLQRQRAIALFR 465


>gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1
 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
          Length = 586

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKRNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica]
 gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1
 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
          Length = 587

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLLVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + + +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL   DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
 gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
          Length = 437

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 148/484 (30%), Positives = 221/484 (45%), Gaps = 50/484 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           MK     +V + W R DLR+ DN  LY A       V+ +FI   E   Q       +  
Sbjct: 1   MKQ----TVSIFWFRRDLRLDDNAGLYYALK-GGHPVLPLFIFDTEILNQLEDREDARVT 55

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FIY ++  +   L ++       + ++   +    +    +  +  ++ N  YE     R
Sbjct: 56  FIYQTIEALNNELREQQSSSILIKYNSTGQA---WNEVLAEYDIAAVYTNHDYEPYARHR 112

Query: 120 DKLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSL 177
           D  L++    + I         +   G ++    + Y V+TP+++     L         
Sbjct: 113 DAELKELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLKPYP 172

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +      +P  +P      F      FP           K  K  +  Y EQRD P
Sbjct: 173 TRKYLDNISKTSPFQLPTLKSMGFAESKTHFPD----------KQYKTIIAGYHEQRDFP 222

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           AI+GTS +  +L  G +S RQ                 +   +WLNELIWREFY  ++  
Sbjct: 223 AIKGTSHIGLHLRFGTVSIRQL----------ATDAYGAEEKTWLNELIWREFYMMILYH 272

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P       F P  ++I W  +    +AW +G TG+P++DA MR+LN  G+MHNR+RM+ 
Sbjct: 273 FPQTADH-AFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVV 331

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+
Sbjct: 332 ASFLSKHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKK 391

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+  +++ W+PE  +                     YP PIVDH  A    L  +  A
Sbjct: 392 FDPKLQYVKKWVPEYADFSK------------------YPEPIVDHAFARERCLKVFKEA 433

Query: 478 KKQS 481
             +S
Sbjct: 434 LSKS 437


>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 536

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 187/490 (38%), Gaps = 30/490 (6%)

Query: 6   AMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +MS VH++W + DLR+ D+ A  AA   S A ++ ++I  P  W     S RQ  F+  S
Sbjct: 6   SMSGVHVIWFKRDLRVHDHAA-LAAAVASGAPILPLYIFEPGYWALPEHSRRQFDFVRDS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++  +L  +G             +I+   +   +  +  +  + +  +          
Sbjct: 65  LEELDAALKARGTKLVIR----MGSAIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAV 120

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +R          +        ++ +      +          +  ++      P      
Sbjct: 121 RRWARNAGISLREQPQNGVQRALQSRDGWANQW---------EAFMRRPRLVAPEALKPS 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGT 242
                   +P+ F             G   A+  LR F + +   Y +    P       
Sbjct: 172 AADSEEWPLPQDFGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAADAC 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFY 298
           S+LSP+L+ G +S R+ W   ++   +      +G      S+++ L W   +   +   
Sbjct: 232 SRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSFISRLQWHCHFIQKLEDQ 291

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            S+        +               AW +G TGFP +DA MR L   GW++ R+R + 
Sbjct: 292 TSIESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFRMRAMV 351

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
             F    L +DW+   E+  +   D +   +    Q    +    +   RI+NP  Q + 
Sbjct: 352 MGFASHHLWLDWKQPAEHLAALFTDFEPGIHYP--QAQMQSATTGMNTPRIYNPVKQSQD 409

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
            DP G FIR W+PEL+ +P +++HAP              L   YP+ IVDH  A     
Sbjct: 410 QDPDGAFIRRWVPELSGLPAEWLHAPWEAPASVRARAGIVLGQTYPMRIVDHMAAAEEAR 469

Query: 472 NQYYAAKKQS 481
           ++ +A +K++
Sbjct: 470 SRIFAVRKRA 479


>gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha
           proteobacterium H17925_38M03]
          Length = 466

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/476 (29%), Positives = 223/476 (46%), Gaps = 19/476 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + L WLR+D R   N  L  A    + +V+  ++     +        Q  ++  SL  
Sbjct: 4   KIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLSN 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +K L++  IV +  + ++F     + D+   ++     +            + LL    
Sbjct: 60  FKKKLNELNIVLEIVETNSFKI---FFDALIKKKDFXIYWNKVYEPDYLKFDEYLLNIFK 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAI 182
            + +  K F  + L     I       +KV+TPF +   +   +                
Sbjct: 117 NNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKNKT 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                             F+  + ++   EQ+A   L+KF KE++  Y E R+ P+I+GT
Sbjct: 177 NFFKNSISVEKILPEKDWFKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSIKGT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP++  G L     WN   ++    +   K        E      + H +  +    
Sbjct: 237 SKLSPFIKFGQLHVETIWNECIKKKPKKIGTSKFLTEIGWRE------FNHSLINHFPHM 290

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +   +    +K  W K+S  L  WK+G TG+PI+DA MR+L + GWMHNR+RMI  SFLV
Sbjct: 291 LKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGSFLV 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DW+ GE+YF + LLD   ASN  GWQW A  G D+ PYFRIFNP +QG++FD  G
Sbjct: 351 KHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFDKDG 410

Query: 423 TFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +++ W+PEL N+  ++IH P  +  +K  L  +YP PIV H++A    LN +   
Sbjct: 411 EYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAFKKI 466


>gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
          Length = 477

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L         ++  EL WR+ + +++         +  
Sbjct: 236 FLRTGELSIRTIWQELASASSSLSK------ETFKKELAWRD-FYNMIYSTFPQQKEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 478

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 203/475 (42%), Positives = 298/475 (62%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++   IY +++
Sbjct: 1   MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++K +++ GI+F Y++ +++ +S  ++  +C   +VT +F+N +YE  E +RDK+++K+
Sbjct: 61  ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I  +     + + PGSI N   +MYK ++ F+   I+ L        P P  +  
Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180

Query: 186 GPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 +   P F  Y  +    +FPIGE      L+ F K     Y   ++I  +  TS
Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +LSIGV+SPRQC   L +E+ D  I  K     W+NEL+WREFY+HL+ FYP++  
Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPD--IIHKLEECKWINELLWREFYQHLLYFYPNIGQ 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +    W  +I+W+ + + L  WKQG TG+PIIDA MRQL  +GW+ NRLRMITASFLVK
Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD    
Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR ++PEL+NV T  IH P      N +   YP PI+++  +   TL  +  AK
Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYYHSKKKTLLVFKHAK 473


>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
 gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
          Length = 434

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 139/470 (29%), Positives = 214/470 (45%), Gaps = 45/470 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   Y A    +  V+ +FI   E   +      +  FI+ +L  
Sbjct: 4   TVNIFWFRRDLRLDDNVGFYEALK-GNHPVLPIFIFDSEILSKLPKDDARITFIHETLQN 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++L      ++     ++    E          +  ++ N  YE     RD  ++  L
Sbjct: 63  IRQTLQD---NYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVL 119

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLT 185
               I  K++ D V+     I+      YKVYTP+ ++  +     D +     A  +  
Sbjct: 120 AEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAYFKNI 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       D  F+  + + P  E ++  I               R+ PA   TS+L
Sbjct: 180 FQEINLPNLSLSDIGFETSNQLIPPYEVSSKLIQNYE---------ATRNFPAQNSTSRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E  ++ +           ELIWREF+  ++  +P      
Sbjct: 231 GPHLRFGTVSIRKMVKKAITETNEIFLH----------ELIWREFFMQILWHFPHTAKD- 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++IEW  +    +AW +G TG+P +DA MRQLN  G+MHNR+RM+  SFL K L
Sbjct: 280 AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L D D++SN G WQW A +G D+ PYFRIFNPT Q  +FD    +I
Sbjct: 340 LIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLEYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           + W+P+   +                    YP PIVDHK+A    L  Y 
Sbjct: 400 KKWVPDFQEL-------------------TYPQPIVDHKEARERCLKTYK 430


>gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
 gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
          Length = 452

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 151/477 (31%), Positives = 221/477 (46%), Gaps = 38/477 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR  D+ A+  A    DA V+A ++  P          R+  ++Y +L 
Sbjct: 1   MPT-LLWFRRDLRCADHPAVLDAAQ-GDADVLACYVLDPRLTGSS--GDRRLAYLYGALR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L   G               + +           +  +  +    +RRD+ +   
Sbjct: 57  DLREQL---GGKLLV----TRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAA 109

Query: 127 LQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           L                L+ PG I       Y+V+TPF +A   +  +A   S P  A  
Sbjct: 110 LADLPGDVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSAR- 168

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               + PS +P   + P    D   P GE  A    R F +E +  Y   R+ P +  TS
Sbjct: 169 ---WIDPSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++S +L  G + PR     L+            GA ++L EL +R+FY  ++  +P    
Sbjct: 226 RMSAHLKFGTIHPRTMAADLER------DGAGDGAAAYLRELAFRDFYAAVLHHWPDSAW 279

Query: 304 GKPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                     E  E      L  AWK G TGFPI+DA MRQL   G++HNR+RMI ASFL
Sbjct: 280 WNWNRTFDAIETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFL 339

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ PYFR+FNPT QG++FDP 
Sbjct: 340 VKDLHLPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPD 399

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQY 474
           G +IR W+PEL +        P +  D + +      +YP PIVDH +     L +Y
Sbjct: 400 GVYIRRWVPELAD--------PATVPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448


>gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
 gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
          Length = 443

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 212/473 (44%), Gaps = 33/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ D   L AA   +    + +F+              +  F+Y SL 
Sbjct: 1   MTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLS 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L  + +V +        D +E +          ++  +  Y      RD      
Sbjct: 55  ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDA----A 103

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  RV   +      + PG +       YKV+TP+ K  + +  +A   +       +  
Sbjct: 104 VAERVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +  R       A  P    GE  AL     FC + +  Y  +RD P +  TS++S
Sbjct: 164 DDVDVSKARNAIPAPDASGPA--AGEAAALERWSAFCDDDLIRYDAERDRPDLDTTSRMS 221

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR     L  +          GA  +  ++ WR+FY  ++   P       
Sbjct: 222 VYLKFGNIHPRTMLADLARKRS-------HGAEQYRRQVAWRDFYADILFQRPDSARRNY 274

Query: 307 FIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +             +  AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVKD
Sbjct: 275 DAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLVSEGWMHNRVRMIVASFLVKD 334

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FNPT QG++FDP G +
Sbjct: 335 LHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGDY 394

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +R W+PEL  V  + +H       K+     YP PIVDH +     L +Y A 
Sbjct: 395 VRRWVPELRGVRGKAVHT-----LKDARPEAYPDPIVDHAEERREALARYGAL 442


>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis]
 gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis]
          Length = 640

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 223/492 (45%), Gaps = 28/492 (5%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS +  +VW R DLRI DN AL AA    D  ++ VFI  P++  Q         ++  S
Sbjct: 1   MSSNKTIVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQS 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      +  +   ++  L         TK+ +NR Y+   + RD  ++
Sbjct: 59  LAHLGHSLKSLGAELLLIKTHS---TLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIK 115

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++L    I  +S++  +L  P  I + +   +  +  +    +   ++      P   + 
Sbjct: 116 EKLVELGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVP 175

Query: 184 LTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               V   +                 +   +  G  NA   L +F ++ +  Y ++R   
Sbjct: 176 AAETVNSCSVEELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEV 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 GGNSTSLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     + F+       WN +    +AW+QG TG+P++DA MR+L   GW+HN++
Sbjct: 296 LCFNFP-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R+I +SF VK LL+ WR G +YF   LLD D+ S+  GWQ+ +    D     R+ +P I
Sbjct: 355 RVIVSSFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEI 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           QG +FD  G ++R WLPEL  +PT++IH P             +L  NYP PIV+   A 
Sbjct: 415 QGSKFDADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLAR 474

Query: 468 HH---TLNQYYA 476
                 + + + 
Sbjct: 475 ERLTEAIFRMWE 486


>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
 gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
          Length = 468

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 232/477 (48%), Gaps = 17/477 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  + W R DLRITDN AL AA    D +V+ V+I +  +       A +  F+   L 
Sbjct: 1   MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L  KG      Q      +   L     Q     +++NR  +      ++ L K 
Sbjct: 60  SLARNLEAKGGRLIIRQ----GRADAVLKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   I    + D  L     +L      +KV+TP+ KA ++  +     +  +  +   
Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLK--LDKPEPTRAISKLSTP 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +P    +       +   GE  A   L  F    +++Y  +RD+PA +GTS+L
Sbjct: 174 PHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEEGTSRL 233

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G LS R+ + +            +     ++NELIWREFY  ++  +P V   +
Sbjct: 234 SQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQVLDHE 293

Query: 306 PFIPW-------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                         + E        Q W +G TGFPI+DA MRQL   G+MHNR+RMI A
Sbjct: 294 FQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNRVRMIVA 353

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL V W  GE +FM  L+DG++ASNNGGWQW+ASTG D+ PYFRI NP  Q KRF
Sbjct: 354 MFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPWSQSKRF 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +I+ W+PEL +VP   + AP    +   L+ +YPLP+VDH +     L  + 
Sbjct: 414 DPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHARERDVALEMFR 468


>gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina]
          Length = 681

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 224/488 (45%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 59  DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     ++ L   P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               + P  F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 236 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAA 477
            L+Q +  
Sbjct: 475 ALSQMWQL 482


>gi|738308|prf||1924377A blue light photoreceptor
          Length = 681

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
 gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
          Length = 455

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 199/469 (42%), Gaps = 20/469 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +  ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D +  +          ++            R   L   
Sbjct: 60  GLDAGLRERGGRLVVR----AGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTA 115

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+     + +       L PG ++      + V+TP+ +      ++  L     P    
Sbjct: 116 LEGTGAELVEHEAVVTALQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLA---APRALT 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S+              +   GE     +L  + ++ V  Y E  D  A  GTS+
Sbjct: 173 VPSGVRSDAVPRRADVEGVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R++                ++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHRVRAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHK 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                               AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K 
Sbjct: 286 DYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G  +F+  L DGDLA+N   WQW A TG D+ P  R+ NP  Q +++DP+G +
Sbjct: 346 LYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +R W+PEL  +  + +H P            YP P+VD  +        
Sbjct: 405 VRRWVPELRGIEGRAVHEPWKRPAGEREG--YPRPLVDLAEGRDRFRRA 451


>gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
 gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
          Length = 494

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 175/476 (36%), Gaps = 24/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI D+ AL+ A       V+ V+I  PE WRQ   S RQ  F+   L  +++
Sbjct: 2   ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G+           D++E LD          L  + +                   
Sbjct: 60  DLARAGLSLVLR----VGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRV----AG 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                      +P   ++       +  +     +    +   +    V A     P   
Sbjct: 112 WARSQGVVWHEVPQCGVVRRLATRDRWQSGRDGFMRAPQLGVPVGLHGVEAPSDDLP--- 168

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPY 248
                       +       G +     L+ F  ++   Y      P    Q  S++SP+
Sbjct: 169 ---DAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRGQTYRRAMSSPLEGAQACSRISPH 225

Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           L+ G LS R+           +            S+ + L WR+ +   +   P++    
Sbjct: 226 LAFGTLSVREAVQAGAARAAAVKGGRDGWSGSMRSFQSRLAWRDHFMQKLEDEPALEYRC 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               +        D+  LQAW +G TG P +DA MR L   GW++ R+R +  +     L
Sbjct: 286 LHPAYEGLRPQTPDATRLQAWSKGETGLPFVDACMRSLAATGWLNFRMRSMVMAVASYHL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DW+           D +   +    Q    +G   +   RI+NP  QG   DP G F 
Sbjct: 346 WLDWKATGPVLARLFTDYEPGIHWS--QVQMQSGTTGMNTIRIYNPVKQGHDQDPTGAFT 403

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLPEL +VP  Y+  P +W      L   YP P+VD  +A      Q +A +++
Sbjct: 404 RHWLPELADVPDAYLQTPWAWGGAGRLLGRRYPEPLVDVARAAKTAREQVWAVRRR 459


>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 486

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 128/492 (26%), Positives = 216/492 (43%), Gaps = 31/492 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHF 60
           M+V L+W R DLR+ D++ L  AC    + +I ++   P Q+ +         S  +  F
Sbjct: 1   MTV-LLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +++ L  +G      Q        + + +   +  V  ++ + +    E    
Sbjct: 59  LLESLADLRQQLRSRGSDLVIRQ----GQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVA 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +E+ L+   I    D    L     L   L          +  ++             
Sbjct: 115 AAVERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPS 174

Query: 181 AIRLTGPVTPSNIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              L   + P  +P             P             +A      +  +++  Y E
Sbjct: 175 IPPLPSGLDPGPLPTLASLGLSSPARDPRARFTYTGGSTAAHARLQTYFWDLDRLRIYKE 234

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +S+LS +L++G +SPR  +  +K    + +       +  + EL+WR+++
Sbjct: 235 TRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERV--RNESTYWLVFELLWRDYF 292

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R ++A + +       I     I W +D    QAW +G TG+P++DA MR+L   G+M N
Sbjct: 293 RFILAKHGAKLFRPSGIQGI-PIPWQQDWPRFQAWCRGETGYPLVDANMRELAATGFMSN 351

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   ASFL K+L +DWR+G E+F S L+D D+ASN G W + A  GND+   FR F+ 
Sbjct: 352 RGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHI 410

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465
             Q + +DP+G ++RHWLPEL  +P   IH P+             L ++YP P+VD +K
Sbjct: 411 PKQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQFGVRLGVDYPRPLVDLEK 470

Query: 466 ACHHTLNQYYAA 477
           +       Y AA
Sbjct: 471 SLAANRRVYEAA 482


>gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio]
          Length = 659

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 191/496 (38%), Gaps = 31/496 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 3   PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +        +                + ++++L +    E     RD  ++K  
Sbjct: 62  LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +      S        I+        +     + LI  +   ++    +    +  
Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177

Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            VTP +      Y   +++            ++P GE  AL  + +  + K +    +R 
Sbjct: 178 CVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237

Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+
Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H+
Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  + 
Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P   G+R DP G FIR +LP L   P +YI+ P +         K  + ++YP P+V+H 
Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474

Query: 465 KACHHTLNQYYAAKKQ 480
           +A    + +     +Q
Sbjct: 475 EASRLNIERMKQIYQQ 490


>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 467

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 161/471 (34%), Positives = 230/471 (48%), Gaps = 14/471 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L AA      +V+ VF+  P +     ++  +  F+  SL ++Q+
Sbjct: 5   LFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLRELQQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +     + +E L     Q     + +NR  E    +RD+ L   L+  
Sbjct: 64  RWRQAGSQLLLLE----GNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAI 119

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + D   L +PP  +       Y+VY P+ ++  +      + +       L   ++
Sbjct: 120 GVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKPVPAPSELKALLKPDLS 179

Query: 190 --PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P       +    A       GE  AL  L  F    + +Y E R++P  +GTS LS 
Sbjct: 180 GLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGRNLPGDEGTSTLSA 239

Query: 248 YLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            L  G LSPR  W    + +      + +     W  EL WREFY+  +  +P +  G P
Sbjct: 240 ALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFHFPELADG-P 298

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           + P   +  W  D   L+AW+ G TG PI+DAAMRQL   G+MHNR RMI ASFLVKDL+
Sbjct: 299 YRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIVASFLVKDLI 358

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR GE +FM+  +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +FDP+ T+IR
Sbjct: 359 CDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASKFDPEATYIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            WLPEL ++ T+ +    S          YP PIV+HK+        Y A 
Sbjct: 418 RWLPELAHINTKDL---ISGDIGALERRGYPEPIVNHKQQQARFKALYAAL 465


>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 484

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 125/487 (25%), Positives = 212/487 (43%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D+  L+ A   S+A VI  +   P Q+ Q           ++ F+  S+
Sbjct: 4   LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  K       Q          L       +V  +++NR+    E+  +  L  
Sbjct: 63  ADLRQSLRGKQSDLILRQ----GHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRS 118

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    I      S  L     L   ++         +  ++   +         ++   
Sbjct: 119 ALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTPQSLSTL 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRD-I 236
             + P  +P+  D+   + +P                A      + ++++  Y E R+ +
Sbjct: 179 PDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKETRNGM 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +++ SP+L++G +SPR    ++K    D +       +  + ELIWR+++R + A
Sbjct: 239 LQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRVKNN--STYWLIFELIWRDYFRFICA 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +         +     + W  +    + W+ G TGFP+IDA MR+L   G+M NR R  
Sbjct: 297 KHGKRVFRVSGL-QGLALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFMSNRGRQN 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W++G E+F S L+D D+ SN G W +AA  GND+   FR FN   Q K
Sbjct: 356 VASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG-FRFFNIVKQAK 414

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DPQG ++RHWLPEL +VP   +  P              +  +YP P+VD  ++    
Sbjct: 415 DYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPEPMVDLWQSAKVN 474

Query: 471 LNQYYAA 477
              Y   
Sbjct: 475 EQIYNRV 481


>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
 gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio]
          Length = 658

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 191/496 (38%), Gaps = 31/496 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 3   PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +        +                + ++++L +    E     RD  ++K  
Sbjct: 62  LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +      S        I+        +     + LI  +   ++    +    +  
Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177

Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            VTP +      Y   +++            ++P GE  AL  + +  + K +    +R 
Sbjct: 178 CVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237

Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+
Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H+
Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  + 
Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P   G+R DP G FIR +LP L   P +YI+ P +         K  + ++YP P+V+H 
Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474

Query: 465 KACHHTLNQYYAAKKQ 480
           +A    + +     +Q
Sbjct: 475 EASRLNIERMKQIYQQ 490


>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 196/501 (39%), Gaps = 37/501 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK        + W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F
Sbjct: 1   MKHN-----SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  + ++L +        +        E       + +VT+L +    E    +RD
Sbjct: 55  LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +EK      +      S        I+        +     + ++ +L          
Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVP 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224
               +    T         Y    ++ +           +P GE          +++   
Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              +   E         T+ LSPY+  G LS R  W R+ E +            S   +
Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGKK--HSDPPVSLHGQ 288

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P+    +       +++W  +   LQAW +G TG+P IDA M QL 
Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++     
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            +FR+++P   GK+ D  G +I+ +LP L   P +YI+ P              +  +YP
Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIV+H  A    + +  AA 
Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487


>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
 gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
          Length = 655

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 190/496 (38%), Gaps = 31/496 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 3   PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +        +                + ++++L +    E     RD  ++K  
Sbjct: 62  LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +      S        I+        +     + LI  +   ++    +    +  
Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177

Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            VTP        Y   +++            ++P GE  AL  + +  + K +    +R 
Sbjct: 178 CVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237

Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+
Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H+
Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  + 
Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P   G+R DP G FIR +LP L   P +YI+ P +         K  + ++YP P+V+H 
Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474

Query: 465 KACHHTLNQYYAAKKQ 480
           +A    + +     +Q
Sbjct: 475 EASRLNIERMKQIYQQ 490


>gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
 gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
          Length = 453

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 216/472 (45%), Gaps = 28/472 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66
           S  L   R DLR+ DN AL  A   S  +VI  FI  P Q   H   S     F+  S+ 
Sbjct: 5   STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L   G     +         + +     QQ++  +F NR Y     RRD  L   
Sbjct: 64  DLQQQLQSAGGKLALYHAL----PEQVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   I   +  DS+L  P   +      YKV+T F     Q  V           +  +
Sbjct: 120 CKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPVALP------EVLVKS 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +  ++            +P    G + AL IL +      Y  +  RD PA+  TS+L
Sbjct: 174 NFLAAASEFTIDQLDLSVTEPAIKGGRKQALAILDRLGDYVDY--LNTRDFPALDATSKL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G  S R+ +  + E+               + +L WR+F+ H+   +P V  G+
Sbjct: 232 SAHLKFGTCSVREVFYAITEQLG--------SEHPLIRQLYWRDFFTHIAYHFPQV-FGR 282

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+     + W+ +    QAW  G TGFPI+DA MR+LN  G+MHNR+RMITASFLVKDL
Sbjct: 283 AFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITASFLVKDL 342

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YF   L+D D   NNG WQW ASTG D+ PYFRI NP +Q  +FD    +I
Sbjct: 343 HIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKFDQDCRYI 402

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             WLPEL   P + IH              YP PI+DH +    +  ++  A
Sbjct: 403 YRWLPELQAFPPKTIHQWDKKHSACS----YPAPIIDHARESQLSKARFKEA 450


>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
 gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
          Length = 474

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 235/476 (49%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   P       I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I        +L     +   + + YKVYTP+ +  IQ        +L    +       
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180

Query: 190 PSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                       + +  ++        GE  A   L+ FC   +Y Y + R+ PAI GTS
Sbjct: 181 AREAGAIALPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  E+ WREFY+  +  +P++ 
Sbjct: 241 LLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLETAHLVT-GKISSSDRQACGYPQPIVDHNQQQKLFKSIYSQLK 473


>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
 gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
          Length = 477

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 235/480 (48%), Gaps = 25/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  R DLR+ DN A  AA       V+A++I          + A    +++ SL  +  
Sbjct: 10  IVLFRRDLRMGDNAA-LAAAAERGVPVVALYILDETTKGLRAMGAASRWWLHHSLAALGD 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G           D   + +D+         +F+NR+Y+ +EV  D  L+  L+ +
Sbjct: 69  LLRKAGANLFLAHGRTEDAVAKAIDA----SGANCVFWNRRYDPSEVAVDARLKAALREK 124

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188
                SFD ++L  P  +   +   YKV+TPF KA+   +   D    P       G + 
Sbjct: 125 GLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQIDGWRGELG 184

Query: 189 ----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  ++          +   +  GE+ A   L +F +  +  Y  QRD P    TS+
Sbjct: 185 GLRLDELDLLPSKPDWAYGLRETWTPGEKGAQARLGQFIEHGLANYERQRDYPGQPSTSR 244

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G ++P Q +  L+            G   +  E+ WREF  HL+   P    G
Sbjct: 245 LSPHLTFGEITPFQIFAALRRSKSS-------GTSKFRAEIGWREFSYHLLFHNPD-LSG 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P  + + W  D   L+ W++G TG+PI+DA MR+L   GWMHNR+RMI ASFL+KD
Sbjct: 297 RNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASFLIKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR GE++F   L+D D A+N   WQW A +G D  PYFRIFNP +QG++FDP G +
Sbjct: 357 LMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHGDY 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R  +PE++ +P +YIH P              L   YP PIVDH  A    L  Y + K
Sbjct: 417 VRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERALIVYQSLK 476


>gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 508

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 175/479 (36%), Gaps = 30/479 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW + DLR+ D++ L  A       V+ + +  PE WRQ   SARQ  F   SL  
Sbjct: 3   PVQVVWFKRDLRVADHQPLLQASFL--GPVLPLMVVEPELWRQSDASARQWDFCAESLED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++L+  G               E L+    +  +  L+ +++                
Sbjct: 61  LRRALAGLGQPLVVR----IGTVEEVLERARCRFGIAGLWSHQETGNGWTYARDRRV--- 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             R         + +P   ++            +   + + +V       P+  +     
Sbjct: 114 -ARWAKSHSIPWIEIPSFGVIRRLGSRNGWARRWEARMAEPMVPPPEALQPLAGLDPGAI 172

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            + S +    D            G+      L              R   A +  S+LSP
Sbjct: 173 PSASELGLAPDPCPGRQVGGRQQGQAVLESFLNGRGARYHRELSSPR--TAFESCSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L+ G LS R+     +      +         +   L W   +   +   P +   +  
Sbjct: 231 HLAWGTLSMREVVQLSRRRGAAPVG--------FEARLHWHCHFIQKLESQPDLEFRELH 282

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                      D   L AW +G TG P +DA MR L   GW++ R+R +  S     L +
Sbjct: 283 PLTAGLRSS--DPERLAAWAEGRTGLPFVDACMRALIATGWINFRMRAMLMSVASYHLWL 340

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR    +     +D +   +    Q    +G   +   RI+NP  QG+  DP G FIR 
Sbjct: 341 PWRESGLHLARLFVDYEPGIHWS--QCQMQSGTTGINTIRIYNPIKQGQDHDPGGDFIRQ 398

Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           WLPEL  VP  ++H P +            L L+YPLPIV+  +A      + +A +++
Sbjct: 399 WLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPLPIVEPNQAAREARVRIWAQRQE 457


>gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus]
          Length = 543

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 488

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 186/499 (37%), Positives = 259/499 (51%), Gaps = 42/499 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS--------------DAKVIAVFIATPEQWRQHGIS 54
             LVW RNDLR            ++                 V A FI T EQW  H  S
Sbjct: 2   TQLVWFRNDLR----------AADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWS 51

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           A + H +      + + L++ GI   + + ++F+ S+  L+++C   +++++ +N +Y +
Sbjct: 52  AAKVHLMLDHADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGV 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           NE RRDK L+ R     +  S       +P G +L    + Y V+TPF +       +  
Sbjct: 112 NERRRDKALKPRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQ 171

Query: 174 LRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRKFCKE 225
              L VP      L G    ++          A+    P      GE  A   L+ F +E
Sbjct: 172 PALLAVPKKVGEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQE 231

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD------LLIKPKSGAF 279
           +   Y   RD PAI+GTS+LSPYL+IG LS RQC     +               + G F
Sbjct: 232 RAGDYKNDRDFPAIEGTSKLSPYLAIGALSGRQCVQAAWQLKQSMGSSFGKAANDEEGFF 291

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           +W  EL WR+FY H++   P V M + F P TE ++WN      +AWK G TG P++DAA
Sbjct: 292 TWETELAWRDFYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAA 351

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLN   WMHNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG
Sbjct: 352 MRQLNETSWMHNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTG 411

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+ PYFR+FNP  QG+RFD  G FIRHW+PEL  + ++ IH P        +   YP P
Sbjct: 412 TDASPYFRVFNPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRP 468

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVD K++    + ++ A +
Sbjct: 469 IVDLKESRKEAIARFQALR 487


>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 555

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + L+  +   ++ +  + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
 gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
          Length = 587

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 476

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 184/475 (38%), Positives = 266/475 (56%), Gaps = 12/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A      + +A+ I +PEQW+ H  +  +  F    L Q+Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHATQT--GRTVALVILSPEQWQLHDDAPIKIDFYLRQLQQLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L    I         + D  +          + +++ N +  +NE++RD  ++K L  
Sbjct: 64  IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +      F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++    +
Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQPINI 183

Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P      F             +   +P+ E  AL +L +F  +++  Y   RD PA  G
Sbjct: 184 DPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQAG 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQ+S YL+IG+LS RQC   L  +     +    G  +WL+EL+WREFY+H++  YP V
Sbjct: 244 TSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESEGQQTWLDELLWREFYQHILFDYPRV 303

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A FL
Sbjct: 304 SKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAMFL 363

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++FDP 
Sbjct: 364 SKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFDPN 423

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G ++R W+PEL ++  + IH P+++   + L  NYP+PIVD K +    +  +  
Sbjct: 424 GDYLRQWIPELAHLDAKSIHEPYAYKMNSSL--NYPIPIVDLKSSRARAIAAFKE 476


>gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
          Length = 618

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP        Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 EKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R           T+ LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
 gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
          Length = 515

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 134/494 (27%), Positives = 228/494 (46%), Gaps = 31/494 (6%)

Query: 6   AMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQS 58
            MS    L+W RNDLR+ D++ L+ A   + A++I V+   P Q+ +           ++
Sbjct: 22  KMSDKRVLIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRA 80

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++ SL + G          +D     +     Q  + +++Y R+    E+ 
Sbjct: 81  QFLLESVTDLRNSLRKLGSDLIVR----YDFPETVIPELVKQLGIDEVYYYREVTSEELA 136

Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QA 172
            +  LEK L    +  KS+  + L     +     ++ +V+T FRK + +N         
Sbjct: 137 VETTLEKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPT 196

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YY 230
             R   +P I +    T   +        Q     F  GE   +  L  +  E+     Y
Sbjct: 197 PQRLPILPQIEVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRLTDYIWEQDCLKDY 256

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            + R+ +     +S+ SP+L++G LSPR  ++ +++     +       +  + EL+WR+
Sbjct: 257 KQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHVQDYEEQRVKND--STYWLVFELLWRD 314

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           ++R +   + +       +     I W +D    + W+ G TGFP++DA MR+L   G+M
Sbjct: 315 YFRFICLKHGNKIFRLSGL-QGVSIPWKEDWERFECWRTGTTGFPLVDANMRELAATGFM 373

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND+   FR F
Sbjct: 374 SNRGRQNVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYF 432

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           N   Q K +D  G +++HWLPEL  +P   +H P              L ++YP P+VD 
Sbjct: 433 NIPKQAKDYDSNGDYVKHWLPELAALPASKVHEPWMLQPVEQKRFGVKLGVDYPNPVVDL 492

Query: 464 KKACHHTLNQYYAA 477
            K+       Y AA
Sbjct: 493 MKSVQSNKKSYEAA 506


>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
          Length = 742

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/491 (25%), Positives = 194/491 (39%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++      VFI  P       +   +  F+   L  + K
Sbjct: 32  VHWFRKGLRLHDNPALREGLVDA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 90

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 91  NLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCREV 146

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +   S        I+        +     +ALI ++         +    L   VT
Sbjct: 147 GIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISLETLNRAVT 206

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +      +    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 207 PISDNHDERFGVPTLEELGFDTEGLKPPIWIGGENEALLRLERHLERKAWVASFGRPKMT 266

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +      + LSPYL  G LS R  + +L E +    IK +    S   +++WREF+   
Sbjct: 267 PESLLSSQTGLSPYLRFGCLSTRLFYYQLSELY--KRIKQERPPLSLHGQILWREFFYCA 324

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L+ W  G TGFP IDA M QL   GW+H+  R
Sbjct: 325 ATRNPNFDRME-GNPICVQIPWEKNQEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLAR 383

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 384 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 442

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YP+PIVDH KA 
Sbjct: 443 FGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQKSIRCIIGKDYPMPIVDHTKAS 502

Query: 468 HHTLNQYYAAK 478
              L +     
Sbjct: 503 EINLERIKQVY 513


>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/501 (23%), Positives = 195/501 (38%), Gaps = 37/501 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK        + W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F
Sbjct: 1   MKHN-----SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  + ++L +        +        E       + +VT+L +    E    +RD
Sbjct: 55  LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +EK      +      S        I+        +     + ++  L          
Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVP 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224
               +    T         Y    ++ +           +P GE          +++   
Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              +   E         T+ LSPY+  G LS R  W R+ + +            S   +
Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGKK--HSDPPVSLHGQ 288

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P+    +       +++W  +   LQAW +G TG+P IDA M QL 
Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++     
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            +FR+++P   GK+ D  G +I+ +LP L   P +YI+ P              +  +YP
Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIV+H  A    + +  AA 
Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487


>gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum]
 gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum]
          Length = 583

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 221/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL AA       VIAVFI  PE+   +        +I  
Sbjct: 1   MSSGGCSIVWFRRDLRLEDNPALAAAVRA--GSVIAVFIWAPEEEGYYCPGRVSRWWIKK 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL + G      + +   DS+  L         T++F+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLKKLGTSLITKRSN---DSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L    +     ++ L   P  +++   + +  ++ F +  +      +   LP   I
Sbjct: 116 KETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 ISGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP L  G +S R+ ++R++ +      +     +     +L  +  REF R+
Sbjct: 236 DSATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  ++P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 MSFYHP-YSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + W  G +YF   LLD DL S+  GWQ+   T  D   +  I NP  
Sbjct: 355 RVVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYP PIV+   A 
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAK 474

Query: 468 HH---TLNQYYAA 477
                 L+Q +  
Sbjct: 475 ERLEEALSQMWQL 487


>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
          Length = 524

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/503 (24%), Positives = 190/503 (37%), Gaps = 35/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQ 57
           M       V + W R  LR+ DN AL  A      S  ++  VFI  P   +   +   +
Sbjct: 1   MNNK---PVVIHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNR 57

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  SL  +  +L + G      +        E       +  V KL +    E    
Sbjct: 58  WRFLVQSLQDLDDNLKKIGSRLFILK----GSPTETFKKVFKEWNVKKLTFEVDIEPYAK 113

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA--------LIQNL 169
            RD+ ++K   H  +      S  +     +  A       T  +            + L
Sbjct: 114 TRDEEIKKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKAL 173

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKE 225
                       + L+       +             ++  GE          + +    
Sbjct: 174 NAPGKLPKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYRGGETEALARMEKYMSQQDWV 233

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             +   +         T+ LSPYL  G LSPR  ++RL E          S   S   ++
Sbjct: 234 CKFSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDGRK--HTSPPTSLTGQM 291

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +WREFY    A+ P+        P  ++I W  + +     AWK G TG+P IDA M QL
Sbjct: 292 LWREFYYTCGAYTPNFNRM-VGNPVCKQIPWKVDPEDEHFVAWKNGRTGYPFIDAIMIQL 350

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            T GW+H+  R   A FL + DL V W +G++ F   LLD D A N G W W +++    
Sbjct: 351 RTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAGNWMWLSASAFFH 410

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
             YFR+++P   GK+ D  G +I+ +LP L   PT+YI+ P              +  +Y
Sbjct: 411 S-YFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPLSVQQTAGCIIGKDY 469

Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479
           P  IVDH       L +   A +
Sbjct: 470 PKRIVDHDVVMKENLAKMKKAYQ 492


>gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
 gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
          Length = 494

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 179/491 (36%), Gaps = 25/491 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  + +  + + W + DLR+ DN+ L+ A  +S+  VI ++I  P        S R  +F
Sbjct: 1   MSKSKS-HITVHWFKRDLRLQDNENLWQALQHSE-PVILLYIFEPSLLDDEHYSERHFNF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  SL  +Q  L          Q     + I           + +++ + +  I +    
Sbjct: 59  IKESLQDLQSRLENYDTKILVVQ----GEVIPVFKKLQQHYTIKRVYSHVETGIRKTYDR 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +  K  Q     +           S+ N    +                Q         
Sbjct: 115 DIAFKVYQQSQDIRWIQFINNGVRRSLSNRVGWVQGWE------WWMTEPQRIFVPQSGD 168

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
            +                            G    L     F ++++  Y      P  A
Sbjct: 169 LVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSFLRDRIKNYNAHISKPLLA 228

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +  S+LSPY++ G LS R+ W R K+         K     + + L W   +       
Sbjct: 229 RKSCSRLSPYIAWGNLSVREVWQRAKKLRQA--SPYKRQIDGFTSRLRWSAHFIQKFEME 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            ++        +    + +      +AW++G TG+P++DA MR L   G+++ R+R +T 
Sbjct: 287 DTMEFVSVNRGFHSLKKVSNPV-YAKAWQEGKTGYPLVDACMRCLVETGYLNFRMRALTL 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF   +L   W+    +   Q LD +   +    Q  A  G   +   RI+NP       
Sbjct: 346 SFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQA--GETGINMLRIYNPVKNSYEH 403

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP+G FI+ W+PEL  VP  YIH P +            +  +YP PIV+ K+   +  +
Sbjct: 404 DPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNTTIGKDYPAPIVNIKETQKYATD 463

Query: 473 QYYAAKKQSLL 483
             +  K++  +
Sbjct: 464 TMWKYKERPAV 474


>gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
 gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
          Length = 502

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 178/477 (37%), Gaps = 20/477 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR +D+ AL  A       V+ +++  P+ W+Q   S RQ  F+  +L ++
Sbjct: 1   MQVVWFKRDLRCSDHAALTRAAQ--VGPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  +G      Q       +E L+    Q R++ L+ + +       +         
Sbjct: 59  RDDLKLRGQPLVVRQ----GSVVEILEGLMRQGRLSALWSHEESGNGWTFQRDCRVAAWC 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +         + +      +      +        A +  +P          
Sbjct: 115 RDNGIPWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPVDIVPGSIPTARDLG 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S++        +        G            + + Y       +      S+LSPY
Sbjct: 175 LGSDVSPGRQSGGR--------GAGLERLESFLNQRGEHYQRAMSSPLEGTSACSRLSPY 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           L+ G +S R+           LL      +    S+   L W   +   +   P +    
Sbjct: 227 LAWGAVSMREVAQANAARQRALLPAEKSWRKSLRSFSGRLHWHCHFIQKIEDEPRIEFEN 286

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +      D+  LQAW++G TG+P +DA MR L + GW++ R+R +  +     L
Sbjct: 287 LHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGWLNFRMRAMLMAVAAYHL 346

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR   ++      D +   +    Q    +G   +   RI+NP  QG   DP G FI
Sbjct: 347 WLDWRAPGQHLARMFTDYEPGIHWS--QVQMQSGTTGINTVRIYNPVKQGFDQDPTGIFI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL  +P +++H P +  +  + +  +YP  I DH  A      + +  +++ 
Sbjct: 405 RIWLPELAQIPDRHLHEPWAADNSAEVIGRHYPERIFDHMAAAKAAREKIWEVRRRP 461


>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
 gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
          Length = 461

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 236/458 (51%), Gaps = 15/458 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLRNDLR+ DN AL+AA     A + A+F+      +     A    ++  SL  + 
Sbjct: 5   ALVWLRNDLRLADNPALHAAFKLGGA-ITALFVHE-SNPQLRDPGAAVRWWLEQSLDLLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL+++ I           +++  ++    +     +F+NR+Y   E   D +++  L+ 
Sbjct: 63  RSLNERNIELIV----ADGEALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +    +SF  ++L+ P  I +     Y+V+TP+ K+L Q+ V   L          T   
Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPLPDRSVETTTVKH 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           TP           + +  ++ IGE  A+  L  F    +  Y   RD P + GTS+LS +
Sbjct: 179 TPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKLSAH 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +SPRQ W+      +D       G   +L+ELIWR+F+ H + + P +       
Sbjct: 239 LRFGEISPRQVWH-ATVSLMDQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDIAEIDM-R 296

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  W  +S  + +W++G TG PIIDA MRQL   GWMHNR+RM+ AS L K++ +D
Sbjct: 297 DTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCKNMQID 356

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE++F   L+D D+ASN G WQW A  G D+ PYFR+FNP +QG++FD +G ++R W
Sbjct: 357 WREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGVYVRKW 416

Query: 429 LPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           +PE+  +P  +IH P +            L   YPLPI
Sbjct: 417 VPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPI 454


>gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
 gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
          Length = 490

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/481 (23%), Positives = 178/481 (37%), Gaps = 19/481 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ +VW + DLR+ D+  L AA       ++ V+I  PE  +      R  HFI  SL 
Sbjct: 1   MSLSVVWFKRDLRLADHAPLSAAVALGQ-PMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G      +     D I    +    QR+  LF   +  +            
Sbjct: 60  DLNHQLQPHGTKVWVLE----GDPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                     +           +     ++        L+    +  + +          
Sbjct: 116 WAKSQGVCWQEFPTNGVQRGRKHRKGWNHRWG-----KLMAAPAETIIPAQLNALRSDLP 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244
                 + +             P GEQ A   L  F   +   Y      P    Q  S+
Sbjct: 171 EDLKGALCQRLGGWLPQHPNFQPGGEQQAHQTLEDFLTHRAGGYQRHISKPEGSRQHCSR 230

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G LS RQ    LKE            AF   + L W   +        ++   
Sbjct: 231 LSPHLAWGNLSIRQVQQALKERQSKGGWARPLSAFE--SRLHWHCHFIQKFESECTMEF- 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +           +++SHL+ AW +G TGFP +DA MR L   G++H R R +  SFL   
Sbjct: 288 ESINRGFLNYPRDQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRARAMLVSFLTHH 347

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWR+G  +  S  LD +   +    Q     G   +   RI+NP  Q    DP  +F
Sbjct: 348 LWQDWRLGVTWLGSLFLDFEPGIHYP--QMQMQAGVTGINTIRIYNPVKQSLEHDPTASF 405

Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           IR W+PE+ ++PT  +H P   S L+     ++YP PIV+   +     +  +  K   +
Sbjct: 406 IRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRARDVLWELKSDPM 465

Query: 483 L 483
           +
Sbjct: 466 I 466


>gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767]
 gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii]
          Length = 555

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 161/483 (33%), Positives = 232/483 (48%), Gaps = 20/483 (4%)

Query: 16  NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D R  DNK L  A   +      +I   I   E++  H +S  +  ++  SL  ++K L
Sbjct: 72  RDFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGSLDVLKKDL 131

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +  I     Q     D    +  +  Q   + +F N +YE++E+R    L   L  + I
Sbjct: 132 REMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLVCFLLDKHI 191

Query: 133 CKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
             +      +  P           Y V+TP+ KA    L   D   +  P        + 
Sbjct: 192 SFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRPHANESFSD 251

Query: 191 SNIPRFFDYPF------------QAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDIP 237
            N     + P             +  D  +  GE  A          +K   Y E R+  
Sbjct: 252 PNKLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKFKKYDESRNEI 311

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           + +  S++S  +S G++S R     + E      I        W+ ++ WR+FYRH++  
Sbjct: 312 SEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGTGWIRQIAWRDFYRHILCN 371

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P VCM KPF+   + + W  +S     W QG TGFPI+DAAMRQLN  G++HNR RMI 
Sbjct: 372 WPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQTGYLHNRCRMIV 431

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DW+ GE YFM  L+DGD ASNNGGW +++STG D  PYFRIFNP +Q +R
Sbjct: 432 ASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYFRIFNPWLQSER 491

Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           FD +GT+IR W+PEL ++  +  IH P+     +    N YP PIVDHK      LN++ 
Sbjct: 492 FDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKNGYPKPIVDHKYCRERALNRFK 551

Query: 476 AAK 478
            AK
Sbjct: 552 DAK 554


>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 498

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 122/492 (24%), Positives = 217/492 (44%), Gaps = 29/492 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           ++W RNDLRI D++ LY A    +A++I ++   P Q+ Q           ++ F+  S+
Sbjct: 7   ILWYRNDLRIHDHEPLYKALK-VNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESI 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G      Q    D     +     Q     +F++++    EV+ ++L+ +
Sbjct: 66  ADLRNNLQKLGSNLVIFQ----DKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQ 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L+   +         L     L   ++         +  ++     +        +   
Sbjct: 122 ALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPKKLSSL 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRD-I 236
             +    +P   D   +                           + ++ +  Y E R+ +
Sbjct: 182 PKIDVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYLKVYKETRNGM 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L++G LSPR  +  +KE     +       +  + ELIWR+++R +  
Sbjct: 242 LGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRVKNQ--STYWLIFELIWRDYFRFICQ 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +    K  +     I W +D    + W+ G TGFP++DA MR+L   G+M NR R  
Sbjct: 300 KHGNKIFHKSGLQGI-AIPWQEDWEKFRKWQAGQTGFPLVDANMRELLATGFMSNRGRQN 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN   Q K
Sbjct: 359 VASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIPKQAK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G +++HWLPEL  VP   +H P   L          + ++YP PI+D  ++    
Sbjct: 418 DYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPIIDLWQSVKEN 477

Query: 471 LNQYYAAKKQSL 482
             +Y  A + +L
Sbjct: 478 EKKYNRALQMTL 489


>gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
 gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
          Length = 436

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 210/472 (44%), Gaps = 44/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V + W R DLR+ DN     A    D  V+ +FI   E   +      +  FIY  L +
Sbjct: 5   KVTIFWFRRDLRLDDNVGFLEALK-GDYPVLPIFIFDKEILDKLPEDDARVTFIYNELQK 63

Query: 68  VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ +L ++          +      +          V  +  NR YE   + RDK +   
Sbjct: 64  MRDTLQAEHDSSLAMFYST----PEQIFKELIADYDVQAVITNRDYEPYALERDKKIASL 119

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I   +F D V+     I+      Y VYTPF+        +     +   +  L 
Sbjct: 120 LEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYTSQYLD 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +  S +P               +                +  Y + R+ PA  GTS+L
Sbjct: 180 NLIDHSRLPNVTLVDMGFKKSSIEV-------PDYDVTPTLIENYEDTRNFPAQDGTSRL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   +  ++          + +ELIWREF+  ++  +P     K
Sbjct: 233 GPHLRFGTVSVRKMVKKAIAQTNEV----------FWSELIWREFFMQILYHFPH-TKDK 281

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++I+W  +    + WK G TG+ ++DA MR+LN  G+MHNR+RM+TASFL K L
Sbjct: 282 AFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTASFLCKHL 341

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD D++SN G WQWAA +G D+ PYFRIFNP  Q  +FD Q  +I
Sbjct: 342 LIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYI 401

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             W+PEL  +                    YP  +VDHK+A    L  Y  A
Sbjct: 402 NKWVPELQELS-------------------YPDKMVDHKEARERCLKTYKEA 434


>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
 gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
          Length = 469

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 245/480 (51%), Gaps = 28/480 (5%)

Query: 12  VWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           +W R DLR+ DN AL  A     ++ +++ VF    +Q+     S     + ++++    
Sbjct: 2   MWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPS---HDYFFSAVAHFI 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++  ++ +       +      E  D         ++L++N        +RD  + + ++
Sbjct: 59  EAAKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGYGRKRDLYITELVE 114

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   SF+D  L  P  +       YK +TP+ K  IQ       +            
Sbjct: 115 QKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHALDFEKAAHFN 174

Query: 188 VTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P      +        +  D    +GE  A   L+ F ++++  Y + RDIP+I+GTS
Sbjct: 175 DAPHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIKGTS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+LS G +S R+ W   +E          +G  ++L EL WR+ + H++ F      
Sbjct: 235 RLSPFLSFGQISIRKVWAACQEMPSS------TGKATFLKELAWRD-FYHMIYFTHPEQK 287

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               I     ++W KD   L  W+ G TG+PIIDAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 288 NYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK 347

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+FD  GT
Sbjct: 348 DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFDKDGT 407

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ ++PEL  +P +++H P+   ++        L  +YPLPIVDH +A    L+ Y   
Sbjct: 408 FIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIVDHNEARKRALDLYSKI 467


>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
          Length = 681

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 139/492 (28%), Positives = 222/492 (45%), Gaps = 28/492 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VIAVFI  PE+   +        ++  
Sbjct: 1   MSGSGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   DSI  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     ++ L   P  + +   + +  ++ F +  +      +   LP   I
Sbjct: 116 KEVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                   S+    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +       W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 MSFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
            G + DP G ++R WLPEL+ +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 VGYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAK 474

Query: 468 ---HHTLNQYYA 476
                 L+Q + 
Sbjct: 475 VRLEQALSQMWQ 486


>gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 632

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 169/488 (34%), Positives = 255/488 (52%), Gaps = 22/488 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  +   VI V++ +P+ W  H +S  +  F   S+  
Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVEL 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126
           ++K L +  I           +  + L     +  V  +F N +YE +E  R ++L+   
Sbjct: 198 LKKELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  +    + D  ++PPGS+ + A + Y VY+P+ +A I +L       +  P      
Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNP 317

Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               +   + F                  +    ++P GE  A+  L +F  EK+  Y +
Sbjct: 318 ANFRNKFSKLFDASVPSIPESKSLTPEEKERFSRLWPAGEAAAIDRLERFLVEKIVKYKD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+ WR+FY
Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      I+W  ++    AW +G TG+PI+DAAMR LN  G+MHN
Sbjct: 438 RHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNHTGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 498 RLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468
            IQ ++FD  G FIR W+ EL +V  + +H P+    +       + YP PIV+H  A  
Sbjct: 558 WIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVEHTVARA 617

Query: 469 HTLNQYYA 476
             L +Y  
Sbjct: 618 RCLKRYKE 625


>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
          Length = 600

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 131/495 (26%), Positives = 204/495 (41%), Gaps = 31/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQ 67
            ++W R  LR+ DN AL  AC    A V  +FI  P   ++    +   +  F+  SL  
Sbjct: 51  SILWFRKGLRLHDNPALRDAC-TGSAAVFPIFIIDPYFLQKSNNKVGVNRYQFLLESLSD 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL+  G      + +      E +        + KL Y    E     RD  ++   
Sbjct: 110 LNSSLTSLGSQLLVLRGT----PEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMA 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
           +   +      S  L    +L    +     T      + + V   L +LP P  RL   
Sbjct: 166 REAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVGHPLTALPAPTARLPPV 225

Query: 187 -------PVTPSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFCKEKVYYYVEQ 233
                        +P + +  F+        G      ++   ++               
Sbjct: 226 DVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDTKWXASFEKPSTD 285

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                   T+ LSPYL  G LS R    RL + +  L  K      S   +L+WREF+  
Sbjct: 286 PSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYR-LHPKHSQPPMSLRGQLLWREFFYT 344

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L +  P+        P   +I W+ +  LL+AW+ G TG+P IDAAM QL   GWMH+  
Sbjct: 345 LGSHTPNFDRI-AGNPICRQITWDTNPALLKAWRDGATGYPWIDAAMTQLREWGWMHHLA 403

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G+E F   LLD D   N   W W +++   +  YFR+++P 
Sbjct: 404 RHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAFFAQ-YFRVYSPV 462

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           + GK++D +G +IR +LP L ++P +YI+ P +            +  +YP PIVDH  A
Sbjct: 463 VFGKKYDKEGAYIRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGRDYPAPIVDHAVA 522

Query: 467 CHHTLNQYYAAKKQS 481
               + +  AA K +
Sbjct: 523 SKECIARMGAAYKAT 537


>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
 gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
          Length = 435

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 218/481 (45%), Gaps = 53/481 (11%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64
           MS V L W R DLR+ DN  LY A     + V+ +FI   E        +  +  FIY  
Sbjct: 1   MSKVTLFWFRRDLRLDDNAGLYHALKE-RSAVLPLFIFDSEILENLDDPADARVTFIYEQ 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +++ L+ K               +E L +   +  V  ++ N  YE    +RD+ + 
Sbjct: 60  IQDMKQQLNAKKSDLIVRH----GKPLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVA 115

Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                  I               IL  A + Y VYTP+R  ++ NL +  L+S P     
Sbjct: 116 AWAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYE 175

Query: 184 LTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        P        F+  +  FP               + +  Y   RD PA + 
Sbjct: 176 SSYAKVKKAEPLLTLKSLGFERSNIEFPP---------MDLSTKMLKTYHATRDFPADEK 226

Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS L  +L  G LS R+     K+               WL+ELIWR+F+  ++  +P 
Sbjct: 227 GTSHLGLHLRFGTLSVRELAREAKKYSP-----------VWLSELIWRDFFMQILWHFPQ 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F P  +KI W K     Q W +G TG+P++DA MR+LN  G+MHNR+RM+ ASF
Sbjct: 276 VE-NQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASF 334

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+ W  GE YF  +LLD DL++NNG WQWAA +G D+ PYFRIFNP  Q ++FDP
Sbjct: 335 LCKHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDP 394

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKK 479
            G +++ W+PE                       + YP P+VDH +A    L  +    K
Sbjct: 395 DGKYVQKWVPE--------------------YGTDEYPQPMVDHNEARGRCLQAFTKVLK 434

Query: 480 Q 480
           +
Sbjct: 435 K 435


>gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
 gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
          Length = 448

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 218/469 (46%), Gaps = 32/469 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+ AL  A  +S   V+A+++      +     A +  F+Y  L ++ +
Sbjct: 8   VLWFRRDLRLGDHAALLEASRHSK-HVLALYVLDEALLK--PGGAPREAFLYGCLEKLNE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      + E + +                     R   + +   +H 
Sbjct: 65  QL---GGRLMLVRGEP---AAEVVKAAKKIGAAAVHVSADTGPYGRRRDASVAKALAEHN 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       S  + PG +       Y+V+TPF +A          R    PA      V  
Sbjct: 119 IEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTA-------RGWHSPADTGPSLVDW 171

Query: 191 SNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              PR    P        +   GEQ AL +  +F  + +  Y E RD P  +GT++LSPY
Sbjct: 172 VEPPRSLKIPKAPAVSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTTRLSPY 231

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR           DL    + GA S  +E+ WREF+  ++   P       + 
Sbjct: 232 LRWGCIHPRTILA-------DLAGDDRVGAKSLRSEICWREFHADVLWHRPETAREN-YD 283

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + ++++ D    + W  G TG+PI+DA MRQL   GWMHNR+RM+ ASFLVKDL + 
Sbjct: 284 HRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVKDLHLP 343

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W +G  +FM  L+DGDLASN   WQW A  G D+ PYFRIFNPT QG++FDP G ++R +
Sbjct: 344 WWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGDYVRKY 403

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +PEL +VP + +H         D    YP P+VDH      +L +Y   
Sbjct: 404 VPELRSVPGKAVHQ------LKDRPEGYPEPMVDHAHERQVSLERYGKI 446


>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 431

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 221/479 (46%), Gaps = 52/479 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           MK+     + L WLR DLR+ DN  L+ A   SDA V+ VFI   +   +      R+  
Sbjct: 1   MKSK----ITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVD 55

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +I+ +L  +  SL +          + +   IE       +  +  +F NR YE   + R
Sbjct: 56  YIHQALTDINISLKKYHSKLN----TYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIER 111

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           DK +      + I  K+  D V+     I+      Y VYTP+ K   + L     +++ 
Sbjct: 112 DKEIYYFFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVE 171

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +    L        +        +            ++                 RD PA
Sbjct: 172 LNFKNLFSQEYSDILTSKEIGFKKTDFKFSKPVLDASIIDDYDQY----------RDYPA 221

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +Q T+QL   L  G +S R+C     +               WL+ELIWREF+  ++  +
Sbjct: 222 LQHTTQLGIALRFGTISIRKCVAFALKHNA-----------VWLSELIWREFFMQILYHF 270

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V   + F    + I+W  +    + W +G TG+PI+DA MR+LN  G+MHNR+RMI A
Sbjct: 271 PRVVH-QSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVA 329

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++F
Sbjct: 330 SFLCKHLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKF 389

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D    +I+ WLPE             +  +       YP PIV+H  A    L++Y  A
Sbjct: 390 DKDLQYIKKWLPE------------WNTPE-------YPSPIVEHTFARERALSEYKKA 429


>gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis]
 gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 197/501 (39%), Gaps = 37/501 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK        + W R  LR+ DN AL AA ++  A++  +FI  P   R   +S  +  F
Sbjct: 1   MKHN-----SIHWFRKGLRLHDNPALLAAMNDC-AELYPIFILDPWFPRNMKVSVNRWRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  + ++L +        +        E       + +VT+L +    E    +RD
Sbjct: 55  LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +EK      +      S        I+        +     + ++ +L          
Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVP 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224
               +    T         Y    ++ +           +P GE          +++   
Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              +   E         T+ LSPY+  G LS R  W R+ E +            S   +
Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGKK--HSDPPVSLHGQ 288

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P+    +       +++W  +   LQAW +G TG+P IDA M QL 
Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNIVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++     
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            +FR+++P   GK+ D  G +I+ +LP L   P +YI+ P              +  +YP
Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIV+H  A    + +  AA 
Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487


>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
 gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
          Length = 533

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 202/492 (41%), Gaps = 32/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W RN LR+ DN AL  A   S   V  +++  P+  +   I   +  FI  SL  +  
Sbjct: 10  VHWFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFILESLADLDN 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        E       + +++KL +         ++D  + K     
Sbjct: 69  NLKKLNSRLFVVR----GRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKL 124

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +      S        I+N       +     ++++ +L         +    + G  T
Sbjct: 125 GVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCNT 184

Query: 190 PSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+       Y    ++ +            +P GE  AL  L  + K++ +    ++   
Sbjct: 185 PTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKKEDWVCKFEKPNT 244

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A       T+ LSPY++ G LS R  + RL E +       +    S   +L+WREF+  
Sbjct: 245 APNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKKKHSQPPV-SLHGQLLWREFFTT 303

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+            ++ W+++   L AW +  TG+P IDA M QL   GW+H+  
Sbjct: 304 AAYKTPNFNKM-VGNSLCLQVPWDQNDEYLAAWAEARTGYPYIDAIMTQLRREGWVHHLA 362

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   L+D D   N G W W +++      YFR+++P 
Sbjct: 363 RHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNWMWLSASSFFHA-YFRVYSPV 421

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
             GK+ DP G +IR ++P+L+  P +YI+ P +            +  +YP PIVDH K 
Sbjct: 422 AFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYPCPIVDHNKV 481

Query: 467 CHHTLNQYYAAK 478
               +++   A+
Sbjct: 482 VTRNMSRMKEAR 493


>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 445

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 207/464 (44%), Gaps = 20/464 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +  S  +    +DLR+ DN  L+AA   +D +V+ +F+              +  F
Sbjct: 1   MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +   L ++G            D++E +     Q    ++           RR+
Sbjct: 60  LRDCLADLDAGLRERGGRLIVRT----GDAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L + L   +       +    PG++       + V+TP+ +A     V+         
Sbjct: 116 ARLREALGGALRVHGAVLTAA-EPGTVTPSGKDHFAVFTPYFRAW--QGVELRRPFAAPR 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAI 239
            +R+   V    +         +  P  P G + A                  R D  A 
Sbjct: 173 GVRVPPGVRSEPLSALSLLGSGSPSPGLPEGGERAGRRRLDAWLRSGLGAYADRQDDLAG 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSPYL  G LSP +  +R ++           GA +++ +L WR+F+  ++A  P
Sbjct: 233 DATSRLSPYLHFGCLSPVELVHRARKSGG-------PGADAFVRQLAWRDFHHQVLAARP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                           W  D   + AWK G TG+PI+DA MRQL   GWMHNR R++ AS
Sbjct: 286 DASHTDY---RPRGDRWRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLVAS 342

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q +RFD
Sbjct: 343 FLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPLAQARRFD 401

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           P GT++R W+PEL ++P + +H P +  D    +L YP PIVD 
Sbjct: 402 PDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIVDL 445


>gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 496

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/478 (23%), Positives = 179/478 (37%), Gaps = 34/478 (7%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS + +VW + DLRI D++ L  A       V+ +++     W+Q   S RQ  F   SL
Sbjct: 1   MSALQIVWFKRDLRIVDHRPLIEASKR--GPVLPLYVVETRLWQQPDSSKRQWLFCRESL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +Q++L+  G            D +E L+   LQ  +  L+ + +       +      
Sbjct: 59  LDLQRALATLGQPLVLRS----GDVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVG 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               +      +         + +      +      + + Q            P     
Sbjct: 115 AWAKQHGICWVEIPQFGVTRRLTSRNGWAKRWEEQMAEPITQPPTSLPRLDGLDPGKIPD 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ- 244
            P                       G +      R F  ++V  Y      P    T   
Sbjct: 175 LPPGAIAPDPCPHRQL--------GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCS 226

Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS YL+ G LS R+                  G  S+ + L W   +   +   PS+  
Sbjct: 227 RLSAYLTWGCLSMREVLQ-------QSRTVKGRGVNSFGSRLHWHCHFIQKLEDEPSIEF 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    +       L  AW +G TG P +DA MR L   GW++ R+R +  SF   
Sbjct: 280 -QDFHPLMRGLRDFDRVKLQ-AWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG+  DP+G 
Sbjct: 338 NLWLPWRQSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGRDHDPEGL 395

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIRHW PEL +VP  YIH P       +L    P PIVD   +     N+ ++ ++ +
Sbjct: 396 FIRHWCPELRDVPEIYIHEPW------ELGGGMPSPIVDVTASMQEAKNRIWSIRRSA 447


>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 438

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 221/473 (46%), Gaps = 46/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66
            + LVWLR DLR+ DN ALY A   S   VI VFI              R+  F+   + 
Sbjct: 4   PLSLVWLRRDLRLHDNAALYYALK-SGRPVIPVFIFDRVILDALDDRLDRRVEFLVQEVN 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L++ G          +   ++          +  +F N  YE     RDK + + 
Sbjct: 63  RLHDELAKLGSTIIVR----YGKPVDVWKELIETYTIGDVFTNHDYEGYAKERDKAIGEL 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I   +  D  +     +L+     Y V+TP+ +     L         + +    
Sbjct: 119 LAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTD-----FYLKSYPTE 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQ 244
              +     +       A     P+GE      +     +    Y E RD PA+   TSQ
Sbjct: 174 NYSSHYWQTKPEPAITLADMGFQPVGEPFPAETVSDKLLDT---YNETRDFPALPHSTSQ 230

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +S R+   + K               ++LNEL WR+FY  ++  +P V   
Sbjct: 231 LSIHLRFGTISIRELARQAKAADDQ----------TFLNELCWRDFYFQVLDHFPHVEQY 280

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F    ++IEW  +      W +G TG+PI+DA MRQLNTIGWMHNR+RMITASFL K 
Sbjct: 281 -SFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITASFLCKH 339

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFDP+  +
Sbjct: 340 LLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFDPKSVY 399

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE++                     +YP P+VDH  A    ++ Y  A
Sbjct: 400 IRQWVPEVDK-------------------PSYPKPMVDHAMARQRAIDTYRKA 433


>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
 gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
          Length = 434

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 216/472 (45%), Gaps = 44/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN     A    +  V+ +FI   E   +      +  FI+ +L +
Sbjct: 3   TVNIFWFRRDLRLDDNVGFLEALK-GEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61

Query: 68  VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L  + G     +       S           +V  +F N  YE   + RDK ++K 
Sbjct: 62  MRDELQEKHGSSIALYH----GKSETIWKQLLEDYKVDTVFTNHDYEPYALERDKKIKKL 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + +  ++F D V+     ++      Y VYTP++    +         +   +  L 
Sbjct: 118 LEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKWQEVFDADKHLKIHYTSQYLE 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +  S +P               I          +     +  Y + R+ PA  GTS L
Sbjct: 178 NLIEHSRLPNISLSDMGFKKSSIEI-------PDYEVTPTLIQNYEDTRNFPAQDGTSHL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E              + +ELIWREF+  ++  YP   +  
Sbjct: 231 GPHLRFGTVSVRKMVKKAIAEKN----------TVFWSELIWREFFMQILYHYPE-TVNN 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++IEW  +    + WK+G TG+ ++DA MRQLN  G+MHNR+RM+ ASFL K L
Sbjct: 280 AFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVASFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD    +I
Sbjct: 340 LIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKKYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + ++PE +                   + +YP  +VDHK+A    L  Y AA
Sbjct: 400 KEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432


>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
 gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
          Length = 447

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 220/473 (46%), Gaps = 29/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+  +L  + +V             + +         + +     +     RRD+ +   
Sbjct: 57  QLNDALQGRLLV-------TRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAG 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G ++ +    Y+V+TPF +       +A   + P  A  L  
Sbjct: 110 LGRVPLVATGSPYLVSP-GRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T          P    +     GE  A+     F   K+  Y   RD P  +GTS++S
Sbjct: 169 AQTDIEQCEI---PDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR     +            +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AYLKFGTIHPRTMVAGM--------DLTGTGARSYLRELAFRDFYGAVLHHWPASAWHNW 277

Query: 307 FIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +   +     +     + WK G TG+P++DA MRQL   G+MHNR+RMI ASFLVKD
Sbjct: 278 NSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVKD 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++FDP G +
Sbjct: 338 LHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGDY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL +V    +H              YP PIVDH       L +Y+  
Sbjct: 398 IRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446


>gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
 gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 491

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/476 (23%), Positives = 178/476 (37%), Gaps = 33/476 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW + DLR+ D++ L  A       V+ +++  PE W+Q   S RQ  F   SLL+
Sbjct: 3   SLQIVWFKRDLRVDDHRPLLEAAAR--GPVLPLYVVEPELWQQPDASERQWLFCRESLLE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++L++ G            D ++ L+    Q  V  L+ + +       +        
Sbjct: 61  LRQALAELGQPLVVRS----GDVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAW 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +  +         + +      +          Q           VPA+    P
Sbjct: 117 ARAHGIQWGEIRQFGVTRRMRSRNGWAKRWE-------EQMAEPITPAPAGVPALEEIDP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                 P     P          G    L  LR F + +   Y      P    T    L
Sbjct: 170 GVIPERPCPELLPDDCSQRQT-GGRSIGLGELRDFLQHRAPCYQRAMSSPKSAFTGCSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ G LS R+                  G  S+ + L W   +   +   P +    
Sbjct: 229 SAYLAWGCLSMREVLQT-------SRHHSGRGVSSFESRLHWHCHFIQKLEDQPEIEFSD 281

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P+   I        L AW +G TG P +DA MR L   GW++ R+R +  SF   +L
Sbjct: 282 -FHPYMRGIRETNA-ERLAAWTEGRTGVPFVDACMRALKAHGWINFRMRAMLMSFASYNL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG FI
Sbjct: 340 WLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQGVFI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W PEL +V T +IH P        L      PIVD   +     ++ +  ++ +
Sbjct: 398 RQWCPELKDVSTIHIHEPW------MLGGGRSAPIVDVTTSMQLAKDRIWEIRRSA 447


>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
          Length = 486

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 148/493 (30%), Positives = 224/493 (45%), Gaps = 24/493 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +     D  +   S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  R +     ++ L   P  I+N   + Y+V+  + +A ++        + P 
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPPLAAPR 174

Query: 180 PAIRLTGPVTPSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A  +LR F   ++  Y
Sbjct: 175 RLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W    +               +L+EL WREF
Sbjct: 235 ATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAHRAATQA-DLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 CWAQLYRFPDLPRRN-LRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHK 464
           P  QGK+FDP G ++R W+PEL  +P   IH                L   YP+P+V H 
Sbjct: 413 PVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHD 472

Query: 465 KACHHTLNQYYAA 477
            A    L+ +  A
Sbjct: 473 AARRRALDAFATA 485


>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
 gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
          Length = 482

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S AKV+ VF   P+   +  ++  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G            + +E + +         +F+N   E     RD+ +   L+  
Sbjct: 65  RYAQVGSQLLILH----GNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKSN 120

Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I       D +L  P  I       Y VY+PF K          + +L   A       
Sbjct: 121 SIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAEQ 180

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +        P           +     GE  A   L++F    +  Y EQR++P + G
Sbjct: 181 EIAKQAGVIPLPTARDLGFIWDGELSISPGEAAAQERLQEFTDSAITEYQEQRNLPGVDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS+LS  L  GV+  RQ W   L+ +      +  +   +W  EL WREFY+H M  +P 
Sbjct: 241 TSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W  +    QAW +G TG+PI+DAAMRQLN +GWMHNR RMI ASF
Sbjct: 301 LAEG-AYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D  P  RIFNP  Q ++FD 
Sbjct: 360 LTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKFDG 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +G +IR W+ EL +V T+Y+            S+ YP PIVDHK         Y   K
Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLELQSIGYPAPIVDHKVQQGLFKKMYQQQK 475


>gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
 gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
          Length = 757

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 180/487 (36%), Gaps = 29/487 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW + DLR++D+ AL  A       V+ ++I  PEQ      +     ++   L  
Sbjct: 3   PVAVVWFKKDLRVSDHAALSRAAER--GPVLPLYIYEPEQLGHEEFAGHHLTYLNECLHD 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L++ G          + +++E L++   +  V  L+ +++          L     
Sbjct: 61  LSARLARLGAPLVIR----YGEAVEVLEALSREVTVGSLWAHQETGNGVSFARDLRVHAW 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   ++         ++N              A  + +    L    +  +  T  
Sbjct: 117 ARARGIPFYEPPQQGVIRRMVNRDGWAD--------AWEERMSAPPLPVPALRGVAGTPA 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                       P      +   GE  A  IL  F + +   Y+     P  A    S+L
Sbjct: 169 SLGVLDHAALRVPLGR-RVIPQGGEAAAHDILESFLQRRGRDYMWAMSSPLTAEDACSRL 227

Query: 246 SPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S  L+ G +S R         L     +   + +    S+ + L WR+ +   +   P +
Sbjct: 228 SAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHWRDHFIQRLESEPRM 287

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +    E + +    Q W++G TG+P+IDA MR L   GW++ R+R +  SF 
Sbjct: 288 EFENLNRAYDGLREPHWNEEYFQRWQEGQTGYPLIDATMRMLRATGWLNFRMRAMLVSFA 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            + L + WR    +   Q LD +   +    Q    +G   +   RI++PT Q +  DP 
Sbjct: 348 AQHLWLHWRRPGLFLARQWLDNEPGIHWS--QMQMQSGTVGINRSRIYSPTRQAREQDPD 405

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR W+PEL  VP  +I  P              L  +YP P+VD          +  
Sbjct: 406 GEFIRRWVPELAGVPAPHIWRPWELPPLAARGLGLRLGRDYPYPVVDEHAPAREAHRRLQ 465

Query: 476 AAKKQSL 482
           A +   L
Sbjct: 466 AVRDTPL 472


>gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
          Length = 681

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 221/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       V A+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group]
          Length = 665

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 222/504 (44%), Gaps = 43/504 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L   
Sbjct: 66  SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   + + G  +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGLES 182

Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +           +  +     +   +  G +NA  +L +F    +  Y +        
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R+L  
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI--- 413
            +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP I   
Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIMEN 421

Query: 414 -----------QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
                      QG+++DP G ++R W+PEL  +PT++IH P             +L  NY
Sbjct: 422 VIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNY 481

Query: 457 PLPIVDHKKACH---HTLNQYYAA 477
           P PIVD   A      +++  +  
Sbjct: 482 PKPIVDLHIARECLDDSISTMWQL 505


>gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 480

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 183/477 (38%), Positives = 258/477 (54%), Gaps = 19/477 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLR+ DN ALY A H  D     V+  TPEQWRQH  +  +       L+ V
Sbjct: 1   MNLVWLRNDLRLEDNPALYHATHQGDT--CCVYSITPEQWRQHDDAPAKIALWRERLIAV 58

Query: 69  QKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           Q  L +  I  +  +      S + +    L     +     +++N +Y +NE +RD+ +
Sbjct: 59  QHELREHNIPLKLIRFTNDNESTYSNMPAALLDLANRIDAHSIYFNNEYPLNEKQRDRHV 118

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +           +D  V++ PG++       YKV+TPF +   +   +  L  +  PA 
Sbjct: 119 SELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGKPAT 178

Query: 183 RLTG--PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +      +      ++          ++P   +     L +F   +   Y E RDIP++ 
Sbjct: 179 QNASLLSLDEDVKTQWLVEDTPYRQDLWPAKTEAIHQRLHQFAANRASNYKEMRDIPSVN 238

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL+ G +S RQC + +++   +        +  W+ ELIWREFYRHL+  YP 
Sbjct: 239 GTSTLSPYLACGAISVRQCISAIRQNVEE------WRSNQWITELIWREFYRHLIDSYPH 292

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + FI   + I WN D     AW +G TG+PI+DAAM+QL   GWMHNRLRM+TA+F
Sbjct: 293 LSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRMVTAAF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LLVDWR GE +FM  LLDGD ASNNGGWQWAASTG D+ PYFRIF+P  Q +RFD 
Sbjct: 353 LTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQSERFDK 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +G FI+  LPEL ++  + IH P+S   K      Y  P+VD+K A    L +Y  A
Sbjct: 413 EGVFIKKLLPELCSLTKKTIHTPNSEQRKTY---GYIEPVVDYKWARQRALEEYATA 466


>gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           11379]
          Length = 451

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 126/467 (26%), Positives = 203/467 (43%), Gaps = 20/467 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  +   
Sbjct: 2   VLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDTG 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  +G      +     +          Q     +           +R++ + + L    
Sbjct: 61  LRDRGGRLIVRRGGTAREV----KRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 116

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                 D+V+                +  F     +   +    +L  P           
Sbjct: 117 CELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAPRTVRVPDGVSG 176

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           +     D        +   GE+    ++  +    +  Y +  D  A   TS+LSP+L  
Sbjct: 177 DALPDRDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSPHLHF 236

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G +S  +  NR +E+          G  +++ +L WR+F+  ++A  P            
Sbjct: 237 GTVSAAELANRAREKGG-------PGGEAFVRQLAWRDFHHQVLAARPDASWSDY---RP 286

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
               W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TASFL K L VDWR+
Sbjct: 287 RHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVDWRV 346

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFDP G ++R W+PE
Sbjct: 347 GARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRRWVPE 405

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           L  V    +H P      +   ++YP P+VD  +A     +++  A+
Sbjct: 406 LAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEAR----SRFERAR 448


>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
 gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
          Length = 435

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 209/471 (44%), Gaps = 43/471 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V++ W R DLR+ DN   + A  +    V+ +FI   E   +      +  FI+ +L +
Sbjct: 4   KVNVFWFRRDLRLDDNLGFFKAL-HGKYPVLPIFIFDSEILNELPKDDARVTFIFNTLQK 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L +KG     +Q       ++          V  +  N  YE+    RD+ ++  L
Sbjct: 63  MRDALQEKGSSLAMYQ----GKPLDIYKQLIKDFDVQNVITNHDYEVYAQDRDEEIKTFL 118

Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         +     ++      Y VYTP++        +     +   +  L  
Sbjct: 119 AQKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDA 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  S +P               +                +  Y   R+ PA+ GTS L 
Sbjct: 179 LIEHSRLPNLSLSDIGFTKSSIEV-------PSYDVRPTLIQEYENTRNFPAVDGTSHLG 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S R+   +   E  +          +++NELIWREF+  ++  +P       
Sbjct: 232 PHLRFGTVSVRKMMRKAISEKNE----------TFMNELIWREFFMQILWHFP-KTQHNA 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    ++I W  +    + WK+G TG+ ++DA MR+LN  G+MHNR+RM+ ASFL K LL
Sbjct: 281 FRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKHLL 340

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD   T+IR
Sbjct: 341 IDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTYIR 400

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+PE                     +  YP  +VDHK+A    L  Y  A
Sbjct: 401 KWIPEFE-------------------TDKYPNKMVDHKEARERCLKVYKEA 432


>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 595

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 124/495 (25%), Positives = 200/495 (40%), Gaps = 31/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67
            ++W R  LR+ DN AL  AC ++   V  VF+  P   +Q  + +S  + +F+  SL  
Sbjct: 7   SIIWFRKGLRLHDNPALLEACKDAK-HVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEKR 126
           +Q+S   +G      +        E       +  VT+  F +      +VR   +    
Sbjct: 66  LQRSFQARGSRLLVLR----GKPEEVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLA 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----------VQADLR 175
            +  V   +     L     ++        +       L+  +                 
Sbjct: 122 AEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPP 181

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +  +P+        P+     F  P   +           L    +  K    +     D
Sbjct: 182 AEDMPSAAPAATGVPTWQEVGFKEPPLTVFKGGETEALARLEAAFQDPKWVAGFQKPDTD 241

Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             A +  +   LSPYL  G LS R  ++    E             S   +L+WREF+ +
Sbjct: 242 PSAWEKPATTVLSPYLKFGCLSAR-LFHARLLEVYRRHPAHSQPPVSLRGQLLWREFF-Y 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             P  ++I+W+ +   L AW++  TGFP IDA M QL T GWMH+  
Sbjct: 300 TVGSTTPNFHRMAGNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLA 359

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G E F   L+D D   N   W W +++   S  YFR+++P 
Sbjct: 360 RHSVACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPV 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           + GK++DP+G FIR +LP L ++P +YI+ P +            +  +YP PIVDH  A
Sbjct: 419 VFGKKYDPEGRFIRKFLPVLKDMPAKYIYEPWTAPLEVQRKAGCVVGRDYPAPIVDHAVA 478

Query: 467 CHHTLNQYYAAKKQS 481
               + +  AA ++S
Sbjct: 479 SKACIARMAAAYRRS 493


>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
 gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
          Length = 459

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 211/472 (44%), Gaps = 20/472 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQV 68
            +   R DLR+ DN  L  A  NS+  VI  FI  P    +    +     F+  SL  +
Sbjct: 7   SIFIFRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+ KG             +   + +   +  +  +F NR Y     +RD+  +K  +
Sbjct: 66  KHQLNDKGAKLYLFH----GIAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACE 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +     + +LL     +                                        
Sbjct: 122 MYNVDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASKFDVNLPEMSSKQNFYTGKIE 181

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              N    F    +        G  NAL IL    + K   Y  +RD P +  T+ LS +
Sbjct: 182 NELNDTDHFLKAKRNKPLYVKGGRSNALKILENLDEFKN--YENERDYPFLDATTGLSAH 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
              G +S R+ +  + ++               + +L WR+FY +L   YP     + F 
Sbjct: 240 NKFGTISIREFYYTVIDKLGIS--------HPLITQLYWRDFYTYLAHHYP-YIFKQSFK 290

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + IEW+ DS   + W  G TGFPI+DA +R++N  G+MHNR+RMITASFLVKDL +D
Sbjct: 291 KKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLHID 350

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ GE+YF  +L+D D + N G WQW+ASTG D+ P+FRIFNP  Q K+FD +  +I+ W
Sbjct: 351 WKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIKKW 410

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + EL NV  + IH   +  +KN     YP PI++HK     +L  +  A ++
Sbjct: 411 IEELRNVSCKSIH---NLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459


>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
 gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
          Length = 447

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 220/473 (46%), Gaps = 29/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+  +L  + +V             + +         + +  +  +     RRD+ +   
Sbjct: 57  QLNDALQGRLLV-------TRGRPEQRIPLIAKAIEASSVHVSGDFAPFGRRRDERVAAG 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G ++ +    Y+V+TPF +       +A   + P  A  L  
Sbjct: 110 LGRVPLVATGSPYLVSP-GRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T          P    +     GE  A+     F   K+  Y   RD P  +GTS++S
Sbjct: 169 AQTDIEQCEI---PDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     +            +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AHLKFGTIHPRTMVAGM--------DLTGTGARSYLRELAFRDFYGAVLHHWPASAWHNW 277

Query: 307 FIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +   +           + WK G TG+P++DA MRQL   G+MHNR+RMI ASFLVKD
Sbjct: 278 NSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVKD 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++FDP G +
Sbjct: 338 LHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGDY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL +V    +H              YP PIVDH       L +Y+  
Sbjct: 398 IRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446


>gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa]
          Length = 704

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 138/512 (26%), Positives = 223/512 (43%), Gaps = 49/512 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+
Sbjct: 11  CSIVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L 
Sbjct: 69  DSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALT 125

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  KSF+  +L  P  + +   + + ++  F +  +      +   LP   I     
Sbjct: 126 AEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLL 185

Query: 188 VTPSNIPRFFDY-----------------------------PFQAIDPMFPIGEQNALHI 218
           +  +                                         +   +  G  NA   
Sbjct: 186 LHHTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKA 245

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKP 274
           L  F    +  Y + R       TS LSP+L  G +S R+ ++ L+ +      +     
Sbjct: 246 LTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAG 305

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+QG TG+P
Sbjct: 306 EESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYP 364

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+
Sbjct: 365 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 424

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---- 450
              T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT++IH P +  +      
Sbjct: 425 ITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAA 484

Query: 451 --DLSLNYPLPIVDHKKACHH---TLNQYYAA 477
             +L  NYP PIV   +A       L+Q +  
Sbjct: 485 GIELGSNYPRPIVGLDEAKARLHEALSQMWQL 516


>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 451

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 216/468 (46%), Gaps = 24/468 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L   R DLR+ DN  L  A   S+ +VI  FI   +       S  +  F+  SL  + +
Sbjct: 8   LFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLNE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++    +  +      S E ++   L+ ++  +F N  Y      ++  ++K    +
Sbjct: 67  QLIKRKTNLRIFR----GRSEEIIEKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQK 122

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +     LL     ++   Q       +     + +            I+       
Sbjct: 123 NIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVR-------SKIKNNFRNYS 175

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            +  +  +     I+    +       +       +   Y + RD P +  T++LS ++ 
Sbjct: 176 LDKIKNDNSLEITIENKEKMEGGRRNALKILKNISEYKNYQKTRDYPGLDKTTKLSAHIR 235

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +S R+ +  +KE              + +N+L WREF+ +++  +P+    + F   
Sbjct: 236 FGTISVREAYQAIKE--------NLGIDHTLINQLYWREFFTYVLHHFPN-SKSRTFKKK 286

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             KI W+ +      W +G TGFPI+DA MRQLN  G+MHNR+RMI ASFL KD+ +DW+
Sbjct: 287 FRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKDMHIDWK 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE YF  +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD    +I+ W+P
Sbjct: 347 LGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNYIKKWIP 406

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           EL  +  +YIH       K    L YP PI++HK   + T   +   K
Sbjct: 407 ELETLQPKYIHNLWK---KYPEGLTYPKPILNHKIESNKTKIIFKNQK 451


>gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
 gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
          Length = 457

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 144/470 (30%), Positives = 210/470 (44%), Gaps = 33/470 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR+ D   L AA   +    + +F+              +  F+Y SL  + 
Sbjct: 18  SLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLSALD 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L  + +V +        D +E +          ++  +  Y      RD      +  
Sbjct: 72  EQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDA----AVAE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   +      + PG +       YKV+TP+ K  + +  +A   +       +     
Sbjct: 121 HVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDPDDV 180

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +  R      +A  P    GE  AL     FC + +  Y  +RD P +  TS++S YL
Sbjct: 181 DVSKARTAIPAPEASGPA--AGEGAALERWSAFCDDDLIRYDAERDRPDLDTTSRMSVYL 238

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G + PR     L  +          GA  +  ++ WR+FY  ++   P          
Sbjct: 239 KFGNIHPRTMLADLARKRS-------HGAEQYRRQVAWRDFYADILFQRPDSARRNYDAK 291

Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           +             +  AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVKDL +
Sbjct: 292 FDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLLSEGWMHNRVRMIVASFLVKDLHL 351

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FNPT QG++FDP G ++R 
Sbjct: 352 PWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGDYVRR 411

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PEL  V  + +H       K+     YP PIVDH +     L +Y A 
Sbjct: 412 WVPELRGVRGKAVHT-----LKDARPQAYPDPIVDHAEERREALARYGAL 456


>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 486

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 127/489 (25%), Positives = 220/489 (44%), Gaps = 29/489 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ LY A     A +I  +     Q++            +  F+  S+
Sbjct: 7   LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL   G      Q        + +     Q  +  ++++ +    E   +  +EK
Sbjct: 66  TDLKKSLQDLGSNLIIRQ----GYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   +  K F  + L     +     ++ +V+T FRK + +N     +   P     L
Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSL 181

Query: 185 TG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-I 236
                     +    + +        ++      E         + +  +  Y E R+ +
Sbjct: 182 PDIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKEYKETRNGM 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G LSPR  +  +++   +      +  +  + EL+WR+++R + A
Sbjct: 242 LGADYSSKFSPWLANGCLSPRYIYEEVQKY--EEKRIKNNSTYWLIFELLWRDYFRFISA 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +    +  +   +   W +D    + W++G TG+P++D  MR+L   G+M NR R  
Sbjct: 300 KHGNKIFYQSGLQGVDI-PWKEDQERFKLWQEGNTGYPLVDGNMRELAATGFMSNRGRQN 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 359 VASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G +I+HWLPEL  +P Q IH P     +        + +NYP P+VD  K+    
Sbjct: 418 DYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNYPRPVVDFFKSVKAN 477

Query: 471 LNQYYAAKK 479
              Y AA K
Sbjct: 478 EKMYNAAIK 486


>gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 606

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 164/526 (31%), Positives = 236/526 (44%), Gaps = 59/526 (11%)

Query: 9   VHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           V + W+R  DLR++DN+AL  A   +      ++ + + +P  +R H  S R+  F+  +
Sbjct: 75  VVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRIDFVLRN 134

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q  L +  I              E +         + L  N ++E++E+RRD  + 
Sbjct: 135 LSDLQARLHKLNIPLWTITVEPRHQIPEKIIQLVSSWGASYLTANIEHEVDELRRDIQVL 194

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              + + I   F     L     +              +    NL+ ++L      A   
Sbjct: 195 NLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWANLINSNLDEYIAAAEDC 254

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV----------------- 227
                        +  F+   P    G + +    +   +                    
Sbjct: 255 HPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAAEELLNQFLNSP 314

Query: 228 -----------------------------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
                                          Y   R+ P + GTS+LS YL+ GV+SPR 
Sbjct: 315 LKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSAYLAAGVISPRA 374

Query: 259 CWNRLKEEFVDLL--------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           C                     +   G   W +EL WR+FY+H++A +P VCM KPF   
Sbjct: 375 CIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWPRVCMRKPFNLK 434

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            E + W +D  LL+ WKQG TG+P IDA MRQL  IG+MHNR RM  A FL KDL++DW+
Sbjct: 435 YESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAMFLTKDLMMDWK 494

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE++FM  L+DGDL SNNGGWQW+ASTG D+ PYFRIF P  Q ++ DP G FIRHW+P
Sbjct: 495 LGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSDPNGDFIRHWVP 554

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475
           EL ++  + IHAP   L  +     NYP PIVDH  A    L +Y 
Sbjct: 555 ELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARYK 600


>gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
 gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
          Length = 469

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 237/480 (49%), Gaps = 24/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           +K L  +GI         + D +   +    Q    T +++N         RD+   +  
Sbjct: 59  RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         L     I+N + Q YKV+TP+ +       +  ++        L  
Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 +     +  +    +       A   L +F ++++  Y   RD PA  GTS+LS
Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP     +P
Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL
Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            D R+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+
Sbjct: 346 CDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L +VP  Y+  P              +  +Y  PIVDH K     + +Y  AK++
Sbjct: 406 AYLPQLEHVPENYLLEPGKMPKNLQESVSCIIGTDYAQPIVDHAKQREQAIAKYEWAKEK 465


>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
          Length = 584

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 197/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 15  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 73

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 74  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 129

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +ALI  +      ++ V + ++    
Sbjct: 130 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCR 189

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 190 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 249

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 250 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 308

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 309 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 367

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 368 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 426

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 427 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 486

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 487 SRLNIERMKQIYQQ 500


>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
 gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Ralstonia solanacearum CFBP2957]
          Length = 522

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 155/474 (32%), Positives = 225/474 (47%), Gaps = 29/474 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRSALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178
            L +       F D V+     +LN   + Y V+TP++ A +  +   D         L 
Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A    G    +       +    +  +      +    L      ++  Y  +RD PA
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSVIALPTGMSGAEALLDDFATRMDDYHARRDYPA 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R    R         +    GA +WL+ELIWR+FY  ++   
Sbjct: 262 VRGPSYLSTHLRFGTVSIRTLAARAHSAM----LHGSRGAATWLSELIWRDFYFMILHHR 317

Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLRM
Sbjct: 318 PDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL+KDL VDWR GE +F   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q 
Sbjct: 378 VTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H
Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVEH 491


>gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST]
 gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score =  279 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 188/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL      +      VFI  P       +   +  F+   L  + +
Sbjct: 7   VHWFRKGLRLHDNPALREGLRGA-RTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDDLDR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 66  NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKEL 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     +A+I ++         +    +    T
Sbjct: 122 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANT 181

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 182 PQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 241

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 242 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 300 ATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 358

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A 
Sbjct: 418 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIAS 477

Query: 468 HHTLNQYYAAKKQ 480
              + +     + 
Sbjct: 478 RANMERIKQVYQH 490


>gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max]
 gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max]
          Length = 682

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 221/486 (45%), Gaps = 25/486 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL A        V+AVFI  PE+  Q+        ++  SL  + 
Sbjct: 8   SIVWFRRDLRIEDNPALTAGVRA--GAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLD 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL   G      + +   D++  L         T+LF+N  Y+   + RD   ++ L  
Sbjct: 66  SSLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 122

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I     ++ L   P  + +   + +  +  F +  +      +   LP   I      
Sbjct: 123 QGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 182

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSP+L  G LS ++ ++ ++ +      +     +     +L  +  RE+ R++   +P
Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 302

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 303 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FD
Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470
           P G ++R WLPEL+ +PT++IH P +  +        +L  NYPLPIV    A +     
Sbjct: 422 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEA 481

Query: 471 LNQYYA 476
           L++ + 
Sbjct: 482 LSKMWQ 487


>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
 gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
          Length = 596

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/494 (24%), Positives = 198/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 27  SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 85

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
           +SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 86  RSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 141

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++ G  
Sbjct: 142 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCQ 201

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 202 AEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKHLERKAWVASYERPRM 261

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 262 NASSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 320

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 321 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMAQLRQEGWIHHLA 379

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 380 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 438

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +A
Sbjct: 439 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAEA 498

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 499 SRLNIERMKQVYQQ 512


>gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
 gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
          Length = 446

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 227/470 (48%), Gaps = 29/470 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ D  AL AA    D  V+A ++  P         +R+  ++Y +L  +++S
Sbjct: 2   LWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATG--GSRRLQYLYDALRDLRES 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  + ++          D +  +         + +  +  +    +RRD+ +   L    
Sbjct: 59  LDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGDVE 111

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           +  +    ++ P G +       YKV+TPF  A  Q+  +    S P  +     P   +
Sbjct: 112 LVATGSPYLVSP-GRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPR-SAHWLDPADVA 169

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S +L  
Sbjct: 170 GKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLKF 229

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--IP 309
           G + PR     L             GA ++L EL +R+FY  ++A +P            
Sbjct: 230 GTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRSTWWNWNSTFD 280

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E  +        +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKDL + W
Sbjct: 281 AIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDLHLPW 340

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G +++ W+
Sbjct: 341 QWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYVKRWV 400

Query: 430 PELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL +V  +  +H         D   +YP PIVDH +     L +Y + +
Sbjct: 401 EELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 445


>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
 gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
          Length = 481

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/466 (26%), Positives = 208/466 (44%), Gaps = 20/466 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L  + 
Sbjct: 30  SIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLD 88

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L ++G            +  + +          ++            R   L   L+ 
Sbjct: 89  AGLRERGGRLVVR----AGEPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 144

Query: 130 R--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               + +       LPPG ++  +   + V+TP+ +      ++  L     P       
Sbjct: 145 TGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLSVPS 201

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              S+     +        +   GE+     L  + ++ +  Y +  D  A  GTS+LSP
Sbjct: 202 KVRSDGVPRREDVEGVSPGLARGGEREGRARLADWRRDGISRYEDLHDDLAGDGTSRLSP 261

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G LS  +C +R +            GA +++ +L WR+F+  ++A  P+       
Sbjct: 262 YLHFGALSAAECVHRARAVGGA-------GADAFVRQLCWRDFHHQVLAARPAAAHEDYR 314

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                    +   H   AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K L +
Sbjct: 315 PRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKTLYL 374

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++DP+G ++RH
Sbjct: 375 DWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDYVRH 433

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           W+PEL  +  + +H P     +      YP P+VD  +        
Sbjct: 434 WVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 477


>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
          Length = 605

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 192/491 (39%), Gaps = 31/491 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L  +  +L
Sbjct: 1   WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +        +        +       + ++TKL      E     RD  ++K      +
Sbjct: 60  RKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGV 115

Query: 133 CKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                 S        I+        +     + LI  +   ++    + A  +    TP 
Sbjct: 116 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKCTTPV 175

Query: 192 NIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  Y   +++            ++P GE  AL  L +  + K +    +R      
Sbjct: 176 LDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNAN 235

Query: 241 G----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                T+ LSPYL  G LS R  + +L + +  +         S   +L+WREF+     
Sbjct: 236 SLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWREFFYTAAT 294

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R  
Sbjct: 295 NNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA 353

Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P   G
Sbjct: 354 VACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFG 412

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469
           +R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+H +A   
Sbjct: 413 RRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEASRL 472

Query: 470 TLNQYYAAKKQ 480
            + +     +Q
Sbjct: 473 NIERMKQIYQQ 483


>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
          Length = 961

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 188/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL      +      VFI  P       +   +  F+   L  + +
Sbjct: 7   VHWFRKGLRLHDNPALREGLRGA-RTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDDLDR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 66  NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKEL 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     +A+I ++         +    +    T
Sbjct: 122 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANT 181

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 182 PQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 241

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 242 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 300 ATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 358

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A 
Sbjct: 418 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIAS 477

Query: 468 HHTLNQYYAAKKQ 480
              + +     + 
Sbjct: 478 RANMERIKQVYQH 490


>gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
 gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
          Length = 679

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 219/492 (44%), Gaps = 28/492 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VIAVFI  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIYAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   DSI  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRT 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     ++ L   P  + +   + +  ++ F +  +      +   LP   I
Sbjct: 116 KEILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 ISGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +       W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 MSFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D     RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
            G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 VGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAK 474

Query: 468 ---HHTLNQYYA 476
                 L+Q + 
Sbjct: 475 VRLEQALSQMWQ 486


>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
 gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
          Length = 436

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 217/473 (45%), Gaps = 45/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN  L  A       V+ +FI   E   Q   +  + +FIY ++  
Sbjct: 4   KISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIET 62

Query: 68  VQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  ++ +K                IE  ++   +  +  +F N  YE + ++RD  +++ 
Sbjct: 63  LNTNIKKKHKSSIAIFH----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKEL 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  I   ++ D V+     I+      Y VYTP++    +N             +   
Sbjct: 119 LANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLESN 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQ 244
             V  +N+P F             +                +  Y   R+ P    GTS+
Sbjct: 179 NFVNNTNLPFFELRDIGFESSSITV-------PEFIITITFIEGYETTRNYPGATNGTSK 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           + P+L  G +S R+           +          + NELIWREF+  ++  +P+  + 
Sbjct: 232 IGPHLRFGTVSIRKIVKHAINSDNKV----------FWNELIWREFFMQILWHFPN-TVN 280

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++IEW  +    + WK G TG+P++DA MR+LN  G+MHNR+RM+TASFL K 
Sbjct: 281 NAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTASFLCKH 340

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q  +FD Q T+
Sbjct: 341 LLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFDKQKTY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +  W+PEL                      NYP  IVDHK A    L  Y  A
Sbjct: 401 VNQWVPELQEF-------------------NYPTQIVDHKFARERCLKVYKEA 434


>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
 gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
          Length = 437

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 216/471 (45%), Gaps = 43/471 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++ W R DLR+ DN    A+    +  V+ +FI  PE          +  FI+ +L  
Sbjct: 5   KINIFWFRRDLRLDDNVGFLASLKE-EHPVMPIFIFDPEILDNLPEDDARVTFIFETLQD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +                 E          + K+F NR YE     RD+ ++K L
Sbjct: 64  MRNELQENH---HSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLL 120

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  ++F D V+     ++      Y VYTP+ K  +++   +DL+     +  L  
Sbjct: 121 DENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLKIHYT-SQFLDN 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V  + +P               +                +  Y + R+IP+ +GTS+L 
Sbjct: 180 LVQNTRLPNLSLSDIGFKKSSLKV-------PDFDTTPSLIQRYEDTRNIPSKEGTSRLG 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S R+   +   E             ++L EL+WREF+  ++   PS      
Sbjct: 233 PHLRFGTVSVRKMVKKANNEKNK----------TFLQELVWREFFMQVLYHNPSTVTD-A 281

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + I+W  +    + WK G TGFP++DA MRQLN  G+MHNR+RM+  SFL K LL
Sbjct: 282 FKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCKHLL 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +LLD +++SN G WQW A +G D+VPYFRIFNPT Q  +FD    +I+
Sbjct: 342 IDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKKYIK 401

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+ E                     S +YP  +VDHK+A    L+ Y  A
Sbjct: 402 EWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433


>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + ++++L Y    E     RD  + K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++ +  + A  +
Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCSTPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRINIERMKQIYQQ 490


>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
          Length = 679

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/487 (26%), Positives = 215/487 (44%), Gaps = 25/487 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL A        V+ +FI  PE+   +        ++  SL  +
Sbjct: 8   CSIVWFRRDLRVEDNPALAAGVRA--GAVLPLFIWAPEEEGHYYPGRVSRWWLKQSLSHL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L          ++F+N  Y+   + RD   ++ L 
Sbjct: 66  DISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHRAKEVLT 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     ++ L   P  + +   Q +  +  F +  +      +   LP   I     
Sbjct: 123 AEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLPPKRIISGDL 182

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++    F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 183 SRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRRKADSATT 242

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S R+ ++  + +      +     +     +L  +  RE+ R++   +
Sbjct: 243 SFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYSRYMSFNH 302

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 303 P-YSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP   G + 
Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNPQFDGYKC 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKAC-HH 469
           DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  KA    
Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDTAKARLQE 481

Query: 470 TLNQYYA 476
            L+Q + 
Sbjct: 482 ALSQMWQ 488


>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
 gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
 gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2
 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
 gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
 gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
 gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
 gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
          Length = 592

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 197/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 23  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 82  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +ALI  +      ++ V + ++    
Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCR 197

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 257

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 316

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 494

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 495 SRLNIERMKQIYQQ 508


>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + ++++L Y    E     RD  + K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++ +  + A  +
Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCSTPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRINIERMKQIYQQ 490


>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
          Length = 593

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 83  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 139 AGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
          Length = 434

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 216/472 (45%), Gaps = 44/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV + W R DLR+ DN     A   SD  V+ +FI   E   +      +  FIY +L +
Sbjct: 3   SVSIFWFRRDLRLDDNVGFLEALK-SDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61

Query: 68  VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L               +   I+          V +++ NR YE    RRD+ +   
Sbjct: 62  MRDRLQNDHTSSLALF----YGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEISSL 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + + I  K+F D V+     ++    + Y VYTP++   ++   + +   +   +  L 
Sbjct: 118 FEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQHLN 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             V  S +P               +                +  Y + R+ PA  GTS+L
Sbjct: 178 NLVENSRLPNLTLSEMGFKTSSLKV-------PDYDVTPTLIDNYEDTRNFPAQDGTSRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E   +          + +EL+WREF+  ++  YP      
Sbjct: 231 GPHLRFGTVSVRKMVKKALAENNQV----------FWSELVWREFFMQILYHYPETI-NN 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++I+W  +    + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K L
Sbjct: 280 AFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD + ASN G WQWAA +G D+ PYFRIFNP  Q  +FD +  +I
Sbjct: 340 LIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERKYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             ++PE +                   +  YP  +VDHK+A    L  Y  A
Sbjct: 400 EKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432


>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
 gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
          Length = 606

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + ++++L Y    E     RD  + K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++ +  + A  +
Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCSTPVSDDHDDKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRINIERMKQIYQQ 490


>gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 556

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 480

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 223/480 (46%), Gaps = 20/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA   +  KV+ VF   P       I+  +  ++  SL ++Q+
Sbjct: 7   LFWHRRDLRIRDNLGLAAARKRTP-KVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +    G      +        E + +         +++NR  E     RD  +   L+ R
Sbjct: 66  NYQSAGSELLILK----GKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121

Query: 131 VICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180
            I  S      L  PP ++   A + YKVYTPF +  I+   Q    +            
Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDIPAI 239
           ++            +   Y ++    + P      A        +  +  Y +QRD P+I
Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFY 298
            GTS LS  L  G L  R  W    + +     +       +W  EL WRE +   + + 
Sbjct: 242 AGTSTLSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQELAWRE-FYQSVMYT 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  P+    +   W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI A
Sbjct: 301 FPNLAEGPYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL++DWR GE+YFM  L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q K++
Sbjct: 361 SFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKY 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP+  +IR WLPE+ ++ T  + +       +     YP  +VDHK+       +Y A K
Sbjct: 420 DPEAEYIREWLPEIRHLDTGALVS-GKIDSNDLEGTGYPCKVVDHKEQQAIFKERYKAQK 478


>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
 gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
          Length = 433

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 155/467 (33%), Positives = 223/467 (47%), Gaps = 45/467 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  LY A  NS  KVI +FI   +   +      +  FIY  L ++  
Sbjct: 7   LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L                  +E L+    +  ++ ++ N  YE   + RDK + + L  +
Sbjct: 66  TLQSHDASILVKH----GKPLEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELLASK 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  K++ D V+     ++      Y +YTP+ K  +  L + D  S+   +        
Sbjct: 122 NIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNYAKK 181

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N P   D  F A              +     +  +  Y + R+ PAI+GTS+LSP+L
Sbjct: 182 SFNFPSLKDIGFTASS---------IKVLPYTMAENMIDNYEDTRNFPAIEGTSRLSPHL 232

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R+C     +   ++          +L EL+WREF+  ++  +P   +   F  
Sbjct: 233 RFGTISVRKCVQNGLQSENNV----------FLKELVWREFFMQILWHFP-KSVTNNFKS 281

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + I+W  D    +AW +G TG+P++DA MR+LN  G+MHNR+RMITASFL K LL+DW
Sbjct: 282 KYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHLLIDW 341

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GE YF  +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD   T+I  W 
Sbjct: 342 KWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYINKW- 400

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                               +   L YP PIV+HK A    L+ Y +
Sbjct: 401 ------------------ASDYQELTYPSPIVEHKFARERCLSTYKS 429


>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
 gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
          Length = 476

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 147/472 (31%), Positives = 212/472 (44%), Gaps = 33/472 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR++DN AL AA   +  +V+ V+I    Q  Q G        +  +L  
Sbjct: 6   PTVIVWFRRDLRLSDNPALLAA--TAMGQVLPVYIHENNQ--QEGGGGAWRWGLQQALAA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  K        C    D    L         T +++NR Y    ++RD+ +++ L
Sbjct: 62  LNADLQGKL-------CCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSL 114

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R +     +  L   P  +L      YKV+TP+ +                P +    
Sbjct: 115 IERGLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPTVTWAT 174

Query: 187 PVTPSNIPRF---------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +  P                +    ++ +GE+ A      F    +  Y + RD P
Sbjct: 175 LPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               TS+LS  L  G+LSP Q W  L+    D           + +EL WREF  + +  
Sbjct: 235 GRDCTSRLSTALQYGLLSPNQVWYGLEHAKADE-----HSVDKFRSELAWREFAYYQLFH 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +PS+     F P  +   W +D   L  W+ G TG PI+DA MR+L   G MHNR+RM+ 
Sbjct: 290 FPSLPHKN-FQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRMLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+DWR G  +F   L+D DLA N+  WQW A  G D+ PYFRIFNP  QG++
Sbjct: 349 GSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQGEK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           FD  GT+ R ++PEL N+P QY+  P              L  +YP P+VD 
Sbjct: 409 FDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460


>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
 gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti]
          Length = 820

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/493 (23%), Positives = 189/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++      VF+  P       +   +  F+   L  + +
Sbjct: 47  VHWFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 105

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 106 NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     +A+I ++         +    +    T
Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 222 PQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAWVASFGRPKMT 281

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 282 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 339

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 340 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 398

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 399 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 457

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      K  +   YPLP+V+H  A 
Sbjct: 458 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCIIGKEYPLPMVNHAIAS 517

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 518 RANMERIKQVYQQ 530


>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
 gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
          Length = 570

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 32/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL AA   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDSSLRKLNSRLFVVR----GQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++ K  +   +    ++S        ++        +     +A+I  +      +  V
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSV 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228
              ++              Y   +++            ++P GE  AL  L +  + K +
Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGPAIWPGGETEALARLDRHLERKAW 234

Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R   +        + LSPYL  G LS R  + RL+E +  +         S   +
Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPPL-SLYGQ 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL 
Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W + +     
Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +++ +LP L   P++YI+ P S  +      K  + ++YP
Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +A    + +     +Q
Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494


>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
 gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
          Length = 434

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 152/471 (32%), Positives = 219/471 (46%), Gaps = 44/471 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLRI+DN  LY A   S  KV A+FI   +       + ++  FI+ ++  +Q
Sbjct: 5   ALFWHRRDLRISDNAGLYKALK-SGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++  + G            +  E +     +  +  +F NR YE N ++RDK +   L  
Sbjct: 64  QAYQKLGASLWIFH----GNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTK 119

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    D V+     I+      Y V+TP+ K   + L    L+  PV         
Sbjct: 120 IGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQLNDFYLQPYPVEKYI----- 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              N+          +  +     Q       +  +  +  Y   RD PAI GT++LS +
Sbjct: 175 --HNLNPNNHVELPTLSELGFSEIQTQHFPSAEIPQTIIQSYENTRDFPAINGTTRLSIH 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +S R+   +  +               + NELIWR+ +  ++ F+    + + F 
Sbjct: 233 LRFGTISIRELAKQALKTN-----------EKYFNELIWRD-FYQMILFFYPRTIEETFR 280

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
               +IEW  D  L QAW  G TG+P++DA MR+LN  G MHNR+RM+ ASF  K L  D
Sbjct: 281 KEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCKHLFHD 340

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W++GE YF  +LLD +LASN GGWQWAA  G D+ PYFRIFNPT Q +RFDPQ  +I+ W
Sbjct: 341 WKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFEYIKKW 400

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PE                     + +YP PIV+HK A   TL  Y    K
Sbjct: 401 VPEFG-------------------TSDYPQPIVEHKWARERTLENYKKVLK 432


>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
          Length = 588

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + L+  +   ++ +  + +  +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
 gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 155/474 (32%), Positives = 217/474 (45%), Gaps = 24/474 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R DLR+ D+ AL AA  + + +V+ VF+A        G S R+          
Sbjct: 3   STSLLWFRRDLRLGDHPALAAAA-DHNHRVLGVFVADDVPLDASG-SPRR--------AV 52

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L+                    L           +  +  Y     RRD+ +++ L
Sbjct: 53  LARTLAALAQAMDGRLLIAHGRPRSVLPRLARAVDADVVHVSADYGPYGRRRDEQVQRAL 112

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q   +      S   + PG +     + Y V+TPF +    +  +   RS         G
Sbjct: 113 QDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARSGSGVDWVDPG 172

Query: 187 PVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            V     + P+ +     A   +  +GEQ AL   R F  E +  Y   RD P   GTS 
Sbjct: 173 EVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPGTSH 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VC 302
           +S YL  G + PR           DL  +  +GA S+  EL WREFY   +   P     
Sbjct: 233 MSVYLKWGSIHPRTLLA-------DLAGRRSTGAASYRRELAWREFYADSVFHLPESVWT 285

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              P I               +AW+ G TG+P IDA MRQL   GWMHNRLRM TASFL+
Sbjct: 286 SVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATASFLI 345

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W+ G E+F+  L+DGD ASNN GWQW A +G  + P+FRIFNP  QG++FDP G
Sbjct: 346 KDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKFDPSG 405

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            F+R ++PEL +VP + +H P        +   YP PIVDH       L ++  
Sbjct: 406 DFVRRYIPELRDVPGRKVHRPWEL--DGGVPAGYPEPIVDHADERAEALRRWQQ 457


>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
 gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
          Length = 490

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 227/498 (45%), Gaps = 34/498 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           M + L+WLRNDLR+ D++ L+ A     A +I V+   P Q++          + ++ F+
Sbjct: 1   MRI-LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++  L  +G      Q        E + +      +  ++++ +    E+  ++
Sbjct: 59  IETVAALKAELRSRGSNLVILQ----GKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQ 114

Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            LE  L    +  + +  + L  P  +     Q+ +V+T FRKA+ +N         P  
Sbjct: 115 RLETVLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEK 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234
              L   + P  +P   D   +                 +   + + Y++   R      
Sbjct: 175 LPSLPNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKE 234

Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
               +     +S+ SP+L+ G LSPR+ +  ++    +         +  + EL+WR+++
Sbjct: 235 TRNGMLGADYSSKFSPWLANGSLSPRRVYEEVQRYERERKKNN--STYWMIFELMWRDYF 292

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R +   Y      K  I     IEW +D      W++G TG+P+IDA MR+L   G+M N
Sbjct: 293 RFVCVKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSN 351

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+   FR FN 
Sbjct: 352 RGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNI 410

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465
             Q K +D +G +++HWLPEL  +P + +H P +            L ++YP P+VD +K
Sbjct: 411 PKQSKDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQK 470

Query: 466 ACHHTLNQY---YAAKKQ 480
           +      +Y   +  KK 
Sbjct: 471 SVSVNERRYEDAWQQKKH 488


>gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 457

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 207/475 (43%), Gaps = 24/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+           +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFVRDTGIHAAGFDAPNRRAFLADCLS 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  +G            +          Q   T++           RR++ L + 
Sbjct: 60  DLDSSLRHRGGRLVVRDGPVVREVRSV----AAQCGSTEVHVAAGVTGYAHRREERLREG 115

Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+   +           + PG++         V+TP+ +   +   +  L +     +  
Sbjct: 116 LRDDGVSLHVHEPVITAVAPGAVTPAGSDHVAVFTPYFRRWSRESPRKPLAAPRTVRV-- 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTS 243
             P      P           P  P G + A                E R D  A   TS
Sbjct: 174 --PRGVRGEPLPDRADVAGASPGLPAGGETAGRDRFARWSRSGLSRYEDRHDDLADDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP +  +R +            GA +++ ++ WR+F+  ++A  P   +
Sbjct: 232 RLSPYLHFGALSPLELVHRARAHGG-------PGAEAFVRQVCWRDFHHQVLAARPEASV 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                           +  + AW+ G TG+P++DAAMRQL   GWMHNR R++ A FL K
Sbjct: 285 KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGWMHNRARLLVAGFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  +F+  L+DGD+ +N   WQWAA TG D+ P+ R+ NP +Q +RFDP G 
Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGV 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL +V    +H P          L+YP P+V+        L ++  A+
Sbjct: 404 YVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHAR 454


>gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
 gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
          Length = 473

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 215/461 (46%), Gaps = 13/461 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL  
Sbjct: 4   SVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAA 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  +G            DS+  L     Q     +++NR+YE     RD  +++ L
Sbjct: 63  LDADLRTRGSSLVLRS----GDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRML 118

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRL 184
           + + I  +S + S+L  P  I     Q YKV+TP+ + ++ +            +    +
Sbjct: 119 REQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHAV 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                                  +  GE  AL  L  F    +  Y EQRD+P   GTS+
Sbjct: 179 DSLALDDLQLAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSR 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G ++P +  + L+            G   +L +L WR+F  HL+  +P     
Sbjct: 239 LSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPTD 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +            L AW++G TG PI+DA +R+L   G+MHNR+RMI AS+L K 
Sbjct: 296 NLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLCKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ  +
Sbjct: 356 LRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQARY 415

Query: 425 IRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPL-PIVDH 463
           I  W+PEL  +P +   AP    L     +  YP  P+VD 
Sbjct: 416 ISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVDL 456


>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
          Length = 594

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 23  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 82  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +ALI  +         V +  +    
Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCR 197

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 257

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 316

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 494

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 495 SRLNIERMKQIYQQ 508


>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
 gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
          Length = 479

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 220/504 (43%), Gaps = 48/504 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACH-----------NSDAKVIAVFIATPEQWR 49
           M   +  S  +VW R D                              VI ++I       
Sbjct: 1   MPTKS--SPVIVWFRKD------------LRLADNLALLAAVEHGGPVIPIYIRETS--- 43

Query: 50  QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
              +   Q  +++ SL  +  +L + G            ++ E L     +     + +N
Sbjct: 44  SGPLGGAQEWWLHHSLASLSAALEKCGSRLLLRS----GNAEETLRRLIAETGADAVLWN 99

Query: 110 RQYEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-- 166
           R+YE   +  DK +++ L       +SF   +L  P  +   +   Y+VYTPF +AL   
Sbjct: 100 RRYEPTGMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGS 159

Query: 167 ---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                   A            +  +    +        +    ++  GE  A   L  F 
Sbjct: 160 EEPHTPADAPQSLKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFI 219

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
              +  Y E RD PA   TS L+P+L++G +SP   W+  K     +          +  
Sbjct: 220 DGALKGYEEGRDFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHIASN---DISRFRK 276

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL+WREF  HL+  +P     K +        W  D     AW +G TG+PI+DA MRQL
Sbjct: 277 ELVWREFCYHLLFHFPE-LDEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQL 335

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G MHNR+RMI ASFL+K LL+DWR GE++F   L+D D ASN   WQW A +G D+ 
Sbjct: 336 WKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADAS 395

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYP 457
           P+FRIFNP +QG++FD +G ++R ++PEL  +  +YIH P     +       +L   YP
Sbjct: 396 PFFRIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYP 455

Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481
           LPIVDH KA    L  Y   K  +
Sbjct: 456 LPIVDHGKARERALAAYAEVKNNA 479


>gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max]
 gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 132/484 (27%), Positives = 216/484 (44%), Gaps = 22/484 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL A        V+AVF+  PE+  Q+        ++  SL  + 
Sbjct: 7   SIVWFRRDLRIEDNPALTAGVRA--GAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLH 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL   G      + +   D++  L         T+LF+N  Y+   + RD   ++ L  
Sbjct: 65  SSLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 121

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I     ++ L   P  + +   + +  +  F +  +      +   LP   I      
Sbjct: 122 QGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 181

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSP+L  G LS ++ ++ ++ +      +     +     +L  +  RE+ R++   +P
Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 302 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A    L  
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480

Query: 474 YYAA 477
               
Sbjct: 481 LSEM 484


>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa]
          Length = 594

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 25  SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 83

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +   +   +  VT+L +    E     RD  +++   +
Sbjct: 84  TSLRKLNSRLFVVR----GQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 139

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +ALI  +         V + ++    
Sbjct: 140 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESCR 199

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 200 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 259

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 260 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 318

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 319 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 377

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 378 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 436

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 437 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 496

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 497 SRLNIERMKQIYQQ 510


>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
          Length = 570

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 32/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL AA   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDSSLRKLNSRLFVVR----GQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++ K  +   +    ++S        ++        +     +A+I  +      +  V
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPAPSV 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228
              ++              Y   +++            ++P GE  AL  L +  + K +
Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLERKAW 234

Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R   +        + LSPYL  G LS R  + RL+E +  +         S   +
Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPPL-SLYGQ 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL 
Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W + +     
Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +++ +LP L   P++YI+ P S  +      K  + ++YP
Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +A    + +     +Q
Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494


>gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 718

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 126/485 (25%), Positives = 208/485 (42%), Gaps = 25/485 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN     A       V+ VFI +P++  Q         ++  SL+Q
Sbjct: 4   SCTVVWFRRDLRLEDNP--ALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSLIQ 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL   G+       +   D++  L         +++ YN  Y+   + RD  +++ L
Sbjct: 62  LDISLRSLGVSLVMINAN---DTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQSL 118

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181
               I     +  L   P  +L+   + +  +  +    +    + +   LP        
Sbjct: 119 VQNGIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLPPRRLTAAP 178

Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +    P                +   +  G  NA   L  F       Y   R    
Sbjct: 179 AGIVHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRHEID 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSP+L  G +S R+ ++ ++        D  +  +     ++  + +RE+ R+L
Sbjct: 239 GPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYSRYL 298

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D  L +AW+QG TG+P++DA MR+L   GW+HNR+R
Sbjct: 299 CFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHNRVR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+ NP  +
Sbjct: 358 VIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNPQTE 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G + DP G ++R WLPEL  +PT++IH P             +L  NYP P+V+   A  
Sbjct: 418 GYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAAARE 477

Query: 469 HTLNQ 473
              + 
Sbjct: 478 RLRDA 482


>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
          Length = 614

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 45  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 517 SRLNIERMKQIYQQ 530


>gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 486

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 26/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+ D+  L+ A        I ++   P        S R   F+Y SL  
Sbjct: 5   PINIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKS 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K L+      +      + ++++  +       + +LF  ++  + +  +     +  
Sbjct: 64  LDKGLANYNRKVEVF----YGEAMDIFNFLNTHYSIQQLFSYQESGLKKTWQRDKKIRAF 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +         + N      + +      +++N       +    A  L   
Sbjct: 120 CAINNIYWEESQRDGIIRGLKNRDTWNKRWHAAMHTPILKNNYSVSKLNTVEHAYVLPQE 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245
           +          Y         P GE+NA   L  F +++ + Y      P       S+L
Sbjct: 180 LVAKLENYPKHY--------QPAGEENAWRYLTSFTQKRGFNYHRHISKPTESRIACSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY + G +S +Q ++ + +                L  L W   +        +     
Sbjct: 232 SPYFAWGNISIKQVFHYVGKHPNGTANNRAFSG--MLTRLHWHCHFIQKFEVECTYETL- 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 E +   K++  L+AWK G TG+P+IDA MR +   GW++ R+R +  SFL  +L
Sbjct: 289 CVNKGYELLAHKKNALFLKAWKTGQTGYPLIDACMRAVEQTGWINFRMRAMVVSFLTLNL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR G  +   Q LD +   +   +Q  A  G   +   R++NP    +  DPQG FI
Sbjct: 349 DQDWRDGVYHLACQFLDYEPGIHYPQFQMQA--GTTGINTVRLYNPVKNSEEHDPQGVFI 406

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+PEL NVP  YIH P +            +  +YPLPIVD K +     ++ +  KK
Sbjct: 407 KKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDYPLPIVDLKTSAKLARDKIWGHKK 466

Query: 480 QSLL 483
              +
Sbjct: 467 HPAV 470


>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 127/498 (25%), Positives = 198/498 (39%), Gaps = 33/498 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---------GISARQSHFI 61
           LVW R  LR+ DN AL AA   S A+V  VF+  P   R                +  F+
Sbjct: 16  LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFL 74

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SLL +   L   G      +    DD  + + +      + KL +    E   + RDK
Sbjct: 75  LESLLDLDARLRCLGSRLLVLRA--RDDVSDAVCAALKDWNIGKLCFESDTEPYALARDK 132

Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        I      S     P   I  +  +    Y  F     +           +
Sbjct: 133 RVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEEYSVL 192

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEKVYYY 230
           P I  TG      +P+  +  +  +   +    +             +  K    K    
Sbjct: 193 PPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAKFEKP 252

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                      T+ LSPYL  G LS R  ++ +++ +       K    S   +L+WR+F
Sbjct: 253 KGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKPPV-SLAGQLLWRDF 311

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    +   P  ++I W +   L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 312 FYTVSLGTPNFDHME-GNPICKQIPWRESEELFVAWRDGRTGYPWIDAIMIQLRKWGWMH 370

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W + +      Y RI+
Sbjct: 371 HLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YHRIY 429

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +P   GK++DP G +IRH++P L ++P +YI+ P +         +  +  +YP P+VDH
Sbjct: 430 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGKDYPKPVVDH 489

Query: 464 KKACHHTLNQYYAAKKQS 481
           + A      +   A   +
Sbjct: 490 EAASKGCRRRMGEAYASN 507


>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
 gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
          Length = 472

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 225/477 (47%), Gaps = 24/477 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR++D+ AL  A   +   VI VFI         G+ A     +   L   + 
Sbjct: 9   LLWFRRDLRLSDHPALTQAA--ARGPVIPVFIHDDSVA---GLGAAPKWRLGEGLAVFRD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+++G      +      + E L+    +   T +++ R Y+ + + RD  ++  L  R
Sbjct: 64  ALAERGARLILRRGP----AREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADR 119

Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLTG 186
                      +  P  +     +MY+VY+P+ +A+    V   LR+           + 
Sbjct: 120 GTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLRAPDLSAPSKWPDSE 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   ++    +     +      GE  A   L  F  +++  Y E+RD+PA   TS +S
Sbjct: 180 ALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDATSDMS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL++G +SPRQ W+       +       GA  +  E++WREF  HLM   P +     
Sbjct: 240 QYLTLGEISPRQLWHAALRGEAEGKS----GAEHFRKEVVWREFAYHLMYHTPRLLDENW 295

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
              W       +DS  ++ WKQG TG   +DAAMR++   G MHNR RM+ AS+L K +L
Sbjct: 296 REGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVASYLTKHML 355

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           V WRIG+++F   L+D D ASN+ GWQW A  G D+ PYFR+FNP  Q ++FD  G ++ 
Sbjct: 356 VHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFDRDGRYVA 415

Query: 427 HWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            WL E +  P+      +   P SW    +   +YP P+VD K+     L  Y   K
Sbjct: 416 RWLAECSRSPSDTALSYFDAIPESWGLSPE--DDYPEPVVDLKEGRRRALAAYEDIK 470


>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
          Length = 455

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+     + +       LPPG ++  +   + V+TP+ +      ++  L     P    
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S+     +        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R +                ++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHE 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       +   H   AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K 
Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++DP+G +
Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +RHW+PEL  +  + +H P     +      YP P+VD  +        
Sbjct: 405 VRHWVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 451


>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
 gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
          Length = 434

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 164/473 (34%), Positives = 228/473 (48%), Gaps = 48/473 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           +V+L WLR DLR+ D+ ALY A  + +  V+ VF+              R+  FI+  L 
Sbjct: 4   TVNLCWLRRDLRLLDHAALYHALKSGN-PVVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ LS+ G          +    +  + Y  +  V ++F N  YE   V+RD  + K 
Sbjct: 63  DLQEKLSKLGSTLDVF----YGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118

Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RL 184
           L+ + I    + D V+     +L    Q Y V+TP+ K     L    L+  PV    R 
Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   IP      FQA    FP                 +  Y + RDIP I+GTS 
Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFPP---------VNVKDNILKNYDKTRDIPGIEGTSH 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +L  G +S R    R                 ++L ELIWR+F++ ++  +P V   
Sbjct: 230 LGVHLRFGTISIRDLAERANTLN-----------ETFLGELIWRDFFQMILWHFPHVVT- 277

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F    + I+W  +    Q W  G TG+PI+DA MR+LNT G+MHNR+RMITASFL K 
Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD DLA+NNG WQWAA  G D+ PYFR+FNPT+Q +RFDP   +
Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE   +                    Y  P+V H++A    L  Y AA
Sbjct: 398 IRKWVPEFEEL-------------------TYVKPMVVHEQARKRVLEVYKAA 431


>gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
 gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
          Length = 488

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 216/487 (44%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++AL  A     A +I  +     Q+R            ++ F+  S+
Sbjct: 7   LIWFRNDLRLHDHEALNEALQE-KADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL + G      Q          +        +T L+Y+ +    E+  +K L+K
Sbjct: 66  ADLRQSLQKLGSNLVIRQGL----PELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPV 179
            L    I         L     L   +          +  ++       ++ A     P+
Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPVLPAPKSLPPL 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-I 236
           P + +    + S +              F  GE      L+ +  +K     Y E R+ +
Sbjct: 182 PDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKETRNEM 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G LSPR  +  +++     +       +  + EL+WR+F+R + A
Sbjct: 242 LGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRVKND--STYWLIFELLWRDFFRFICA 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       +   +   W +D    + W++G TG+P++DA MR+L T G+M NR R  
Sbjct: 300 KHGNKIFFSQGLQGIDL-PWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNRGRQN 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 359 VASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G ++R+WLPEL  VP   IH P     +        L ++YP P+VD  K+    
Sbjct: 418 DYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKSVKGN 477

Query: 471 LNQYYAA 477
              Y+ A
Sbjct: 478 EALYHRA 484


>gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
 gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
          Length = 507

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 175/480 (36%), Gaps = 24/480 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW + DLR  D++ L AA +  +  VI +++   + W+    S RQ  FI   LL
Sbjct: 1   MTT-VVWFKRDLRTRDHEPLIAAVNLGE-PVIPIYVVEDDYWQLPDTSERQWAFIRDCLL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L   G               + L+       V ++F +++               
Sbjct: 59  DLDQQLKYAGNRLVVCN----GAVTDVLNQLKANHDVQRVFCHQETGGQWTYDRDRSVI- 113

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                    +     L         +               +L++  +   P        
Sbjct: 114 --------HWCTENNLEYREWNQFGVVRRLKNRDVWDKAWADLMRRPVLDSPENIPSAHS 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
             TP            +       G      +L  F + +   Y      P  A++  S+
Sbjct: 166 QATPLEGISPTFTTRDSCGDRQAGGSTKGHKLLDSFLERRCIGYQYNMSSPLSAVKACSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           LSP+++ G +S R+ + + K      + L + +    S+ + L W   +   +   P + 
Sbjct: 226 LSPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLHWHCHFIQKLEDEPELE 285

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                           DS  LQ W++G TG+P++DA MR L   GW++ R+R +  +   
Sbjct: 286 FRAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRALQHTGWINFRMRAMLMAVAS 345

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L + WR    +   Q  D +   +    Q    +G   +   RI+NP +Q ++ DPQG
Sbjct: 346 YQLWLHWRDPALHLARQFTDFEPGIHYP--QAQMQSGLTGINALRIYNPVLQSQKLDPQG 403

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FIR W+PEL  VP + IH P               Y  P+ DH++A           + 
Sbjct: 404 EFIRRWIPELAGVPAEMIHTPWLLTPAQQQRFGGNTYIAPVCDHEQAARSARKAVGDFRN 463


>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2654]
          Length = 475

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 146/485 (30%), Positives = 231/485 (47%), Gaps = 26/485 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR++D+ AL+AA +     VI +FI         G+ A     +   L  
Sbjct: 4   STVILWFRRDLRLSDHPALWAAANA--GLVIPLFIRDQSV---DGLGAAAKWRLGEGLRV 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L  +G+     +     ++ + L     +   T++ ++R Y+   + RD  ++  L
Sbjct: 59  FGEALEDRGLKLILRR----GNARDVLREVIEETGATEVHWSRLYDPEAIERDTDVKSAL 114

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIR 183
           +   I  +S    ++  P ++       YKVY+PF +A+    V   L +       +  
Sbjct: 115 KEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDEPLPTPDLTGPESWP 174

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +  +    +    +     +      GE+ A   L  F  +K+  Y   RD+PA   TS
Sbjct: 175 DSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDLPAEDATS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++S YL+ G +SPRQ W                GA  +L E++WREF  HL+  +P +  
Sbjct: 235 RMSEYLTYGEISPRQLWAAGARAMDAGKA----GAEHYLKEVVWREFAYHLLYHFPQMLT 290

Query: 304 GKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                 W +     ++    ++AWKQG TG P +DAA+R++   G+MHNR RMI AS+L 
Sbjct: 291 ENWREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRARMIVASYLT 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K  ++ WR+G+ +F   L D D ASN  GWQW A  G D+ PYFR+FNP  QG++FDP+G
Sbjct: 351 KHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQGEKFDPKG 410

Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYA 476
           T+ + W+ E    P +         P SW  K +   NYP  P+V  K+     L  Y A
Sbjct: 411 TYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGREAALAAYEA 468

Query: 477 AKKQS 481
             K S
Sbjct: 469 RPKAS 473


>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
 gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
          Length = 434

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 147/472 (31%), Positives = 214/472 (45%), Gaps = 45/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V + W R DLR+ DN   Y A   S+ KV+ +FI   E   +      +  FIY +L +
Sbjct: 4   TVTVFWFRRDLRLDDNIGFYNALK-SEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L    G            +             +  +F NR YE    +RD+ +E+ 
Sbjct: 63  MRGELQDNYGSSIAMFH----GNPESVFSELIKNYTIDAVFTNRDYEPYATKRDESIEQL 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I  K+F D V+     ++      YKVYTP+ K   +   + DL+      + L 
Sbjct: 119 LSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV-LD 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +  S +P               I        L K  +       + R+ PA   TS L
Sbjct: 178 NLIQNSRLPNLSLSDIGFTKSNQEITPYTVTPTLIKEYE-------DTRNFPAQDATSHL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E              +  ELIWREF+  ++  +P     +
Sbjct: 231 GPHLRFGTVSVRKMVKKAMAE----------SNEVFWQELIWREFFMQILWHFP-HTKDE 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++IEW  +    +AW +G TG+P++DA MRQLN  G+MHNR+RM+  SFL K L
Sbjct: 280 AFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD    +I
Sbjct: 340 LIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIKKFDKDLKYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+                   K+    +YP  I+DHK A    L  Y AA
Sbjct: 400 KKWV-------------------KDYEKSSYPKEIIDHKSARERCLTVYKAA 432


>gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]
          Length = 679

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 217/488 (44%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  SL  +
Sbjct: 8   CSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         T++F+N  Y+   + RD   ++ L 
Sbjct: 66  DSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     +S L   P  + +   Q +  +  F +  +          LP   I     
Sbjct: 123 AQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDV 182

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S ++ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 243 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 303 P-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  +G + 
Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKC 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469
           DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A      
Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEE 481

Query: 470 TLNQYYAA 477
            L Q +  
Sbjct: 482 ALIQMWQL 489


>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
 gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
          Length = 582

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  + 
Sbjct: 14  SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 73  NSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+        +     +A+I  +         + + ++    
Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL E +  +         S   +L+WREF+  
Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYGQLLWREFFYT 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 308 AATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 486 SRLNIERMKQIYQQ 499


>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
 gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
          Length = 479

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 233/478 (48%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S +K++ VF   P       ++  +  ++   L  ++K
Sbjct: 6   LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G          +D+ I  + +     +V  +F+N   E     RD  +   L+ +
Sbjct: 65  QYTQAGSQLVIL----YDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREK 120

Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I     +       P  IL+ +   Y VYTPF K          + +L           
Sbjct: 121 GIQTLNQNWDQLLHSPDEILSGSKTPYTVYTPFWKNWSSKPKANPVATLKNSEGLTAAEQ 180

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +      + P           + +   GE  A   L  F    +  Y EQR+ P + G
Sbjct: 181 EIAKQSGAINLPSAQDLGFIWDGELIIEPGEAVAKARLETFTTSAINEYQEQRNFPTVHG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W   KE       +  +    +W  E  WREFY+H M  +P+
Sbjct: 241 TSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFAWREFYQHAMYHFPA 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +K  W  +    QAW +G TG+PI+DAAMRQLN IGWMHNR RMI ASF
Sbjct: 301 LANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P  RIFNP  Q ++FD 
Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-LRIFNPASQAQKFDI 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IR W+ EL +V T+Y+ +  +       ++ YP PIVDHKK        Y   K
Sbjct: 419 DGEYIRQWVRELKSVDTEYLVS-GNITPLERRAVGYPTPIVDHKKQQGLFKQLYQEQK 475


>gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680]
 gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis
           MA-4680]
          Length = 457

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 126/474 (26%), Positives = 212/474 (44%), Gaps = 22/474 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA  +   +V+ +F+           +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRLHDHPPLRAAL-DGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D ++ +     +    ++           RR++ L   
Sbjct: 60  DLDAGLRERGGRLVLRS----GDVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRSA 115

Query: 127 LQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+    PG++   +   + V+TP+ +   +  ++    +L  P    
Sbjct: 116 LEADGRRLHVHETVITAVAPGAVTPSSSDHFAVFTPYFRHWEREHLR---DALGAPRGVR 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S               +   GE+     L  + +  +  Y ++ D  A   TS 
Sbjct: 173 VPESVGSERLPTRTELSGLSQGLAAGGEEEGRKRLMAWLRGGITAYEDRHDDLAGDATSH 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LSP +  +R +            GA +++ +L WR+F+  ++A  P     
Sbjct: 233 LSPHLHFGTLSPVELVHRARR-------TGGPGAEAFVRQLAWRDFHYQVLAARPDAATA 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                             ++AW+ G TG+P+IDAAMRQL   GWMHNR R++TASFL K 
Sbjct: 286 DYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRLLTASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q KR+DP G +
Sbjct: 346 LYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGAY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  +    +H P      +  + +YP PIV+        L ++  A+
Sbjct: 405 VRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVELADG----LARFRHAR 454


>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
 gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 45  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 219

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 517 SRLNIERMKQIYQQ 530


>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus]
          Length = 593

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 83  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
          Length = 581

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 12  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 71  TSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 306 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 423

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 484 SRLNIERMKQIYQQ 497


>gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 504

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 109/476 (22%), Positives = 175/476 (36%), Gaps = 33/476 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + LVW + DLR  D++ L  A       V+ ++I  P+ W Q   SARQ  F   +L  
Sbjct: 7   PLQLVWFKRDLRSVDHRPLALALER--GPVLPLYIVEPQFWLQPDASARQWAFCREALEA 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ LS  G            D++E L+   L+  V  L+ + +             K  
Sbjct: 65  LQERLSALGQPLVVR----VGDAVEVLERARLRLGVAALWSHEETGNAFTYARDRRVKAW 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +         +        +        L    +         P    +  
Sbjct: 121 ARSHGIPWRECPQFGVIRGLRRREGWATRWQERMATPLTPEPLALPPLPAIQPGGLPSAS 180

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                                  G   A  +L+ F + +V  Y      P  A  G S+L
Sbjct: 181 DLGLTADPCPCR--------QRGGRPQAETVLQDFLQRRVQRYCGSISSPLTAFDGCSRL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G LS R+                  G  ++ + L W   +   +   P+    +
Sbjct: 233 SPYLTWGCLSLREVVQ-------ASASLTCRGVRNFRSRLHWHCHFIQKLESEPA-IEHR 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P+   I         QAW +G TG P +DA MR L   GW++ R+R +  S     L
Sbjct: 285 DFHPFMRDIRVWDA-ERYQAWAEGRTGLPFVDACMRALIAHGWINFRMRAMLMSVATYHL 343

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR    +     +D +   +    Q    +G+ S+   RI+NP  QG   DP+G FI
Sbjct: 344 WLPWRDTGLHLARLFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGLDHDPKGVFI 401

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W PEL + P  ++H P           ++P PIVD  +A     ++ +A ++ +
Sbjct: 402 RRWCPELAHRPDVWLHEPWRG------GGDHPAPIVDPDQAAREARDRIWAIRRAA 451


>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
 gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 162/488 (33%), Positives = 244/488 (50%), Gaps = 25/488 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M + ++W R D+R+ D+ AL  A       + K++A++   P  + +  +     HF + 
Sbjct: 1   MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHF-FQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    K   +  +          DD +           +  +F+N        RRDK +
Sbjct: 59  NLAHFVKEARESQVYVHLLH----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114

Query: 124 EKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLP 178
              L+ + I  S      L     IL      Y+V+TP+ ++  +   Q     D     
Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P++     +  +           IG   A++ L +F ++++  Y E+RDIP+
Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LS +L  G +S R  ++       +  +    G  +++ EL WR+FY  + A Y
Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFH----AIYEEALYEDEGRETFIKELAWRDFYHMIYAHY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   K      + ++WN+D  L +AW +G TGFP++DA MRQLN  GWMHNRLRM+TA
Sbjct: 291 PEM-KEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KD L+DWR GE YF  +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF
Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           DP G  IR ++PEL  V  ++IH P              L   YPLP VDH++     ++
Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469

Query: 473 QYYAAKKQ 480
            +  AK+Q
Sbjct: 470 LFEEAKQQ 477


>gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
 gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
          Length = 495

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 213/490 (43%), Gaps = 30/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ L  A     A++I  +     Q+R+           ++ F+  SL
Sbjct: 7   LIWYRNDLRLHDHEPLNKALKE-KAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL ++G      +        + +     + ++T ++Y+++    E+  +K LE 
Sbjct: 66  ADLKKSLQERGSDLIIRKGL----PEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALES 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +         L     L   +          +  ++     D       ++   
Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPL 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRD-I 236
             +    +P       +          +                + K  +  Y E R+ +
Sbjct: 182 PAIEIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKETRNGM 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G +SPR  +  +++     +       +  + EL+WR+++R + A
Sbjct: 242 LGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQRVKND--STYWLIFELLWRDYFRFICA 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       +   +   W +D    Q W++G TG+P++DA MR+L   G+M NR R  
Sbjct: 300 KHGNKIFYPSGLQGLDL-PWKEDWQRFQLWQEGKTGYPLVDANMRELAATGFMSNRGRQN 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 359 VASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP G ++RHWLPEL  VP   IH P     +        L ++YP P+VD  K+    
Sbjct: 418 DYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVDFFKSIKTN 477

Query: 471 LNQYYAAKKQ 480
               Y+ +++
Sbjct: 478 -EAIYSTREK 486


>gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca]
          Length = 673

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 131/493 (26%), Positives = 221/493 (44%), Gaps = 25/493 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL A        V+A+FI  PE+   +        ++  SL  +
Sbjct: 7   CSVVWFRRDLRVEDNPALLAGVRAGG--VVALFIWAPEEEGPYYPGRVSRWWLKHSLAHL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L   CL    T+LF+N  Y+   + RD   ++ L 
Sbjct: 65  DSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLS 121

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I     ++ L   P  + +   + +  +  F +  +      +   LP   I     
Sbjct: 122 ANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRIISGDA 181

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                    F+   +      +   +  G  +A   +  F    +  Y   R       T
Sbjct: 182 SRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTT 241

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 242 SLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  + +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 302 P-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  +G + 
Sbjct: 361 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKC 420

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469
           DP G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV  + A      
Sbjct: 421 DPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQE 480

Query: 470 TLNQYYAAKKQSL 482
            L + +  ++ + 
Sbjct: 481 ALTEMWQHERAAA 493


>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
 gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
          Length = 828

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 114/477 (23%), Positives = 182/477 (38%), Gaps = 20/477 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  + +
Sbjct: 51  VHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 109

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 110 NLRQLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 165

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I      S  L     +          T  +   I   + A  +    PAI L      
Sbjct: 166 NIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPE--PAITLAAIGRA 223

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                        +  +  +G +        +   +       R    +   + LSPYL 
Sbjct: 224 VTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEAL--ARLERHLGTQTGLSPYLR 281

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LS R  + +L + +  +         S   +L WREF+       P+        P 
Sbjct: 282 FGCLSTRLFYYQLTDLYKKIKKAY--PPLSLHGQLFWREFFYCAATKNPNFDKM-AGNPI 338

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369
             +I W++++  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W
Sbjct: 339 CVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISW 398

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G + F   LLD D + N G W W + +      +F  + P   G++ DP G +IR +L
Sbjct: 399 EEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKADPNGDYIRRYL 457

Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P L N PT+YIH P +  +      +  +  NYPLP+V+H  A    + +     +Q
Sbjct: 458 PVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQVYQQ 514


>gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis
           familiaris]
          Length = 593

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 83  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 139 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 199 ADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
          Length = 580

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 12  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 71  TSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 306 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 423

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 484 SRLNIERMKQIYQQ 497


>gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 503

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 107/474 (22%), Positives = 179/474 (37%), Gaps = 32/474 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + +VW + DLR  D+ AL  A  +    V+ +FI  P  W Q   SARQ  F   SL +
Sbjct: 23  PLQVVWFKRDLRTIDHGALSQASRS--GPVLPLFIVEPMFWAQPDASARQWEFCAESLAE 80

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++L+  G            +++  L +   Q+ + +L+ +++   +   R   L  R 
Sbjct: 81  LREALAALGQPLVIRT----GEALAVLKALHRQRGIAQLWSHQETGNDFTYRRDRLVARW 136

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +           ++ N            R+++  +           P    +  
Sbjct: 137 CREQSIRWHQPRSFGVIRAMGNRDGWAPAWELLMRQSVCADPAPLTRLGGIDPGGIPSAD 196

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                       P          G      +L  F   +   Y ++   P  A +  S+L
Sbjct: 197 DLKL--------PSDPCPGRQRGGRSQGAALLESFLHHRGRRYAKELSSPLTAFESCSRL 248

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L+ G LS R+     +           +G  +++  L W   +   +   PS+    
Sbjct: 249 SAHLTFGTLSMREIVQTAR---------LNNGPKAFVERLHWHCHFIQKLESQPSLEYQN 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               +        D   L  W +G TG+P +DA MR L   GW++ R+R +  S     L
Sbjct: 300 AHRAYDGLRAD--DPQRLALWIEGRTGWPFVDACMRALRHHGWINFRMRAMLMSVASYQL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR   E      +D +   +    Q    +G   +   RI+NP  QG   DP+G FI
Sbjct: 358 WLPWRQSGEALARLFVDYEPGIHWN--QCQMQSGTSGINTVRIYNPIKQGLDHDPEGAFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP   IH P            YP P+VD++ A     +Q +  +K
Sbjct: 416 RQWLPELQGVPVSGIHTPWLL---AQPPETYPHPVVDYEAAARQARDQVWGLRK 466


>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
 gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
          Length = 458

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 229/475 (48%), Gaps = 30/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR++D  AL AA   S+  V+ V++   +  RQ  +      +++ SL  + +
Sbjct: 6   LLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLASLDR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +KG      +      S + L +   +    ++     YE      +K + K L   
Sbjct: 64  ALREKGSRLTLRR----GKSADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKALDLC 119

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRLT 185
           +     D  +LLPPG++   +  +YK+YTPF +A+++ +  A             +   T
Sbjct: 120 L----HDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTPATIDAPESWPET 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++   +              +  GE  A   +     ++V  Y   R++P+++GTS+L
Sbjct: 176 DRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVA-AFIDEVGDYPTGRNLPSVEGTSRL 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SP   W+R+     D           +L ELIWR++    +   P+     
Sbjct: 235 SPHLHYGEVSPAYVWHRVTASNADA--------EIFLKELIWRDYTHTQICEMPAYGSKN 286

Query: 306 PFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +  +  +      AWK+G TG+PI+DA MRQL T GWMHNR+RMI ASFL+K
Sbjct: 287 ARDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFLIK 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR G ++F   L+D D A+N+  WQW A +G D+  + RI  P  Q ++FD  G 
Sbjct: 347 HLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLTQSEKFDA-GD 405

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR W+PEL  +  + IH P +   + D   +YP  I+ H+      L  Y   K
Sbjct: 406 YIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAAYRRIK 457


>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
          Length = 569

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 197/493 (39%), Gaps = 31/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  +  
Sbjct: 1   VHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDT 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129
           SL +        +        +       +  VT+L +    E     RD  +++   + 
Sbjct: 60  SLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   + +   L     I+    Q   +     +ALI  +      ++ V + R+     
Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    Y   +++            ++  GE  AL  L K  + K +    +R    
Sbjct: 176 EIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMN 235

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + RL + +  +         S   +L+WREF+   
Sbjct: 236 ANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTA 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R
Sbjct: 295 ATNNPRFDRVE-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 353

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P  
Sbjct: 354 HAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVG 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +  
Sbjct: 413 FGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETS 472

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 473 RLNIERMKQIYQQ 485


>gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2
          Length = 582

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  + 
Sbjct: 14  SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 73  NSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+        +     +A+I  +         + + ++    
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL E +  +         S   +L+WREF+  
Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYGQLLWREFFYT 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 308 AATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 486 SRLNIERMKQIYQQ 499


>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 466

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 217/474 (45%), Gaps = 32/474 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR+ DN AL+AA   S   VI +++   +             +++ SL  ++
Sbjct: 11  AVVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARWWLHHSLTSLE 69

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +S+ + G             +   L     +     +F+NR+Y   E R D+ ++   + 
Sbjct: 70  ESIGRAGSALAIRTGP----AERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAARD 125

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLT 185
              +  SF  ++L  P ++   +   + VYTPF +A +                P   L 
Sbjct: 126 TGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLARPEPRRPLPALRRLRPGPSLP 185

Query: 186 GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          +   +   +  GE+ A   L  F  E +  Y  +RD+P I  TS+
Sbjct: 186 SLELDELKLLPVHPDWADGLRETWKPGERAAHRELSAFLGEGLARYRAERDVPGIAATSR 245

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP L  G LSP Q W+           +   GA ++L+EL WREF  H     P++   
Sbjct: 246 LSPRLRWGELSPFQVWHATAAARDRSTAE---GAATFLSELGWREFAYHTYFERPALATV 302

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +            L+AW+QG TG P++DA MR+L   G MHNR+RM+ ASFL K+
Sbjct: 303 NIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHNRVRMVAASFLTKN 362

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+FNP +Q ++FDP G +
Sbjct: 363 LLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNPEVQREKFDPHGDY 422

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PE                     + +YP P+VD  +     L  +   K
Sbjct: 423 VRRWVPE------------WD-------TADYPEPLVDLAETRRAALAAWETVK 457


>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 122/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  ++   V  V+I  P           +  F+  SL  + 
Sbjct: 3   SVHWFRKGLRLHDNPALSAALRDA-TSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  V++L +    E     RD ++ K  + 
Sbjct: 62  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKE 117

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+        +     +A+I  +      +  V   ++    
Sbjct: 118 AGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEACR 177

Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   ++D            ++P GE  AL  L +  + K +    +R   
Sbjct: 178 AEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYERPRM 237

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RLKE +  +         S   +L+WREF+  
Sbjct: 238 NANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPL-SLYGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 297 AATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL   W  G + F   LLD D + N G W W + +      +F  + P 
Sbjct: 356 RHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G ++R +LP L   P++YI+ P S  +      K  + ++YP PIV+H +A
Sbjct: 415 GFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEA 474

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 475 SRMNIERMKQTYQQ 488


>gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
 gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
          Length = 472

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 219/479 (45%), Gaps = 15/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA     A  I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDAALRALGSGLVIR----AGDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRS 115

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPA 181
           L+ R I     ++ L + P  +       YKV+TP+ +  +  L      A  RSLP   
Sbjct: 116 LRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALP 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             L      +          Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 176 ATLKSAALETLGLVPKLDWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLEANRNARNSAEIDG---YIRQLGWRDFAYHLLHHFPDT 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI AS L
Sbjct: 293 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASLL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 353 CKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 412

Query: 422 GTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
             +I  W+PEL  +  +   AP  S L     +  YP  PI+   +     L  Y   +
Sbjct: 413 AAYITRWVPELGKLAVKERFAPWLSPLSLARFAPKYPRTPIIGLAEGRDAALAAYAKTR 471


>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii]
          Length = 614

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 45  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 517 SRLNIERMKQIYQQ 530


>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana
 gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ +      +     +     +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAA 477
           +Q +  
Sbjct: 489 SQMWQL 494


>gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio]
          Length = 545

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 123/505 (24%), Positives = 196/505 (38%), Gaps = 34/505 (6%)

Query: 2   KATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
              T MS + + W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F
Sbjct: 22  PKATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRF 80

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +  SL +        +        E L     Q ++T+L +    E     RD
Sbjct: 81  LIEALKDLDSSLKKLNSRLFVVR----GSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRD 136

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-----------FRKALIQNL 169
           K + K  +   +  +   S  L     +          T              K  I   
Sbjct: 137 KEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAP 196

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----LHILRKFCK 224
              D+R +  P                      ++ P    G +          + +   
Sbjct: 197 TNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNW 256

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              +   +      I  T+ LSPY+  G LS R  W RL + +            S   +
Sbjct: 257 VCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVY--RGKTHSDPPVSLHGQ 314

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P+    +       +++W+ +   L AW++  TGFP IDA M QL 
Sbjct: 315 LLWREFFYTTAVGIPNFNKME-GNSACVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLR 373

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++     
Sbjct: 374 QEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS-TFFH 432

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            YFR+++P   GK+ D  G +I+ +LP L   PT+YI+ P              +  +YP
Sbjct: 433 QYFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYP 492

Query: 458 LPIVDHKKACHHTLNQYYAAK-KQS 481
            PIVDH+      + +  AA  K+S
Sbjct: 493 RPIVDHEVVHKKNILRMKAAYAKRS 517


>gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
 gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
          Length = 445

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 213/469 (45%), Gaps = 31/469 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ D+ AL+ A  +S   ++A+++            + +  F+  SL ++ K+
Sbjct: 2   LWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLE--PAGSPRIAFLLNSLRELDKA 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           LS +             D +  + +   + R   +  +         RD  + + L    
Sbjct: 59  LSGR---LMVR----CGDPVREVVAAAREIRAAAVHVSADTAPYGRERDDAVAEALAEHR 111

Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           I      S   + PG +       Y+V+TPF +A  Q+       +       +    + 
Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQHGWPRPADTNVSIVDWVKPASSE 171

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                               GE+ AL   ++F  + +  Y  +RD P   GT++LSPYL 
Sbjct: 172 PLPEPPEVECELPP-----AGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSPYLR 226

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR           DL      GA +  +EL WREF+  ++   P          +
Sbjct: 227 WGAIHPRTMLA-------DLAGNRSEGAQALRSELCWREFHADVLWHRPETARRNYDQRF 279

Query: 311 --TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                        +   W++G TG+PI+DA MRQL   GWMHNR+RMI ASFLVKDL + 
Sbjct: 280 DGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKDLHLP 339

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G  +FM  L+DGDLASN   WQW A +G D+ PYFRIFNPT QG++FDP+G ++R +
Sbjct: 340 WWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDYVRRY 399

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +PEL  V  + +H         +    YP PIVDH +     L +Y A 
Sbjct: 400 VPELRGVAGKAVH------VLKERPEGYPQPIVDHAEERQVALQRYGAI 442


>gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
 gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
          Length = 395

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 206/395 (52%), Positives = 273/395 (69%), Gaps = 3/395 (0%)

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144
            +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L++  +C+ FDDSV+LPP
Sbjct: 2   DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV-VCEGFDDSVILPP 60

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G+++    +MYKV+TPF+ A ++ L +     +  P +R +G + PS             
Sbjct: 61  GAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFD 120

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
              FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL 
Sbjct: 121 TAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLL 180

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
            E    L         WLNELIWREFYRHL+ ++PS+C  +PFI WT++++W  +   LQ
Sbjct: 181 AEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQ 238

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGD
Sbjct: 239 AWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGD 298

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
           LA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P 
Sbjct: 299 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPW 358

Query: 445 SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 359 KWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393


>gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis]
          Length = 655

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 134/481 (27%), Positives = 212/481 (44%), Gaps = 24/481 (4%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS +  +VW R DLR+ DN AL A        VI ++I +PE+  Q+        ++  S
Sbjct: 1   MSTNCSIVWFRRDLRVEDNPALAAGVRA--GAVIVLYIWSPEEEGQYYPGRVSRWWLKQS 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   +SI  +         T+LFYN  Y+   + RD  L+
Sbjct: 59  LAHLDSSLRNLGARLITKRST---NSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLK 115

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLP 178
           + L  R I  +SF+  +L  P  + +     +  +  +    +             + + 
Sbjct: 116 QDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIV 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +        +            +   +  G  +A   L  F    +  Y   R    
Sbjct: 176 AGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKAD 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSP+L  G LS ++ ++ L+        +     +     +L  +  RE+ R+L
Sbjct: 236 SATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYL 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +PS    KP +       W  DS   ++W+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 296 SFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIR 354

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL  +  GWQ+ +    D     RI NP  +
Sbjct: 355 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFE 414

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A  
Sbjct: 415 GYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKE 474

Query: 469 H 469
            
Sbjct: 475 R 475


>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 469

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 239/478 (50%), Gaps = 28/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTENAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +SF +++L  P ++ N   Q +++++ + +A+ +++    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                  +      GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLAELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LNQRN-LRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IR W+ EL +V T +IH P     +     NYPLPI+ H++     L  +   +
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRDRALRAWKEIR 467


>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
          Length = 589

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 20  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 79  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++    
Sbjct: 135 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 194

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 195 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 254

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 255 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 313

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 314 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 372

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 373 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 431

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 432 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 491

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 492 SRLNIERMKQIYQQ 505


>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
 gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
          Length = 477

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 159/481 (33%), Positives = 218/481 (45%), Gaps = 24/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ----HGISARQSHFIYASLL 66
           L W R DLR+ DN  L AA   S A V  V++  P+          ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIESLV 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   + G      +     D +  L     Q     + ++R  E     RD+ + K+
Sbjct: 66  ELQQRWREAGSRLLVVK----GDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKK 121

Query: 127 LQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           LQ        D               G          + +     A   + V A    + 
Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTGLVD 181

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +   +L    +   +     +    I P  P GE  AL  L  FC   +  Y   R+ P 
Sbjct: 182 LDPAQLPALESLEALRESHGFKGAEICPCRP-GEAAALAQLNSFCDGPLLAYEPDRNFPG 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAF 297
             GTS LS  LS+G LSPRQ W   ++       +        W  EL WREFY+  +  
Sbjct: 241 TAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQALFH 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR RMI 
Sbjct: 301 FPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRMIV 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 360 ASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G +IR W+PEL +V T+ +    S         +YP P+VDHKK        Y   
Sbjct: 419 FDSAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKKQQARFKALYATL 475

Query: 478 K 478
           +
Sbjct: 476 R 476


>gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
 gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
          Length = 483

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 170/476 (35%), Gaps = 19/476 (3%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + DLR+ DN AL AA  +++  ++ +++  P   R      R  HFI  SL  +   
Sbjct: 1   MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           LS    +    +     D+ E          +  ++ + +  +                 
Sbjct: 60  LSPHDTLLHVLEA----DAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSEFAQSQ 115

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                +           N        +             +   +               
Sbjct: 116 DIDWLEYPTNGVQRGRRNRKGWSRAWHQQMSAQ-----PDSPRLNALPGRTPALPEALSG 170

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYL 249
            + R               GE+ A   L  F + +V  Y      P  +    S+LSPY+
Sbjct: 171 RVCRRLAQWETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASRNSCSRLSPYI 230

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G LS RQ +  L++         +    ++ + L W   +         +   +P   
Sbjct: 231 AWGNLSIRQVYQALQQAREKGQ--WRRQLAAFESRLHWHCHFIQKFEMECRMEF-EPINR 287

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                    D  L++AW +G TG+P+IDAAMR L   G+++ R R +  SFL   L  DW
Sbjct: 288 GYIPHRTEADPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRAMLTSFLCHYLAQDW 347

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R G  +  S  LD +   +    Q     G   +   RI+NP  Q    DP G FI  W+
Sbjct: 348 RQGAAWLGSLFLDFEPGIHYA--QMQMQAGVTGINTIRIYNPVKQSMDHDPDGDFIAQWV 405

Query: 430 PELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           PEL  +P    H P        +  S +YP P+V  + +     ++ ++ KK   +
Sbjct: 406 PELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDRLWSLKKDPTI 461


>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
 gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
          Length = 468

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/484 (27%), Positives = 207/484 (42%), Gaps = 29/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLR+ D+  L AA   + A V+ +F+              +  F+   L 
Sbjct: 1   MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFVRDRAVDAAGFAVPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D +E +     +    ++        +  RR+  L   
Sbjct: 60  DLDAGLRERGGRLVVRS----GDLVEEVCRVAAEADAGEVHMASDVSAHAHRREDRLRTA 115

Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIR 183
           L+            + +  PGS+       + V+TP+ +   +   ++       VP   
Sbjct: 116 LEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPRRVPVPE 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--------YVEQRD 235
             G   P +     D            G       LR    +            Y ++ D
Sbjct: 176 GIGSEEPPDRRELSDLSPGLARGGEREGRARLAAWLRGGSGDGKGAGVVGDVGEYEDRHD 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             A   TS+LSP+L  G LSP +          +       GA +++ +L WR+F+R ++
Sbjct: 236 DLAGDATSRLSPHLHFGTLSPVEVVR-------EAGGLGGPGAEAFVRQLAWRDFHRQVL 288

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A  P+                      +QAW++G TG+P++DAAMRQL   GWMHNR R+
Sbjct: 289 AARPAAAHEDYRTRHDRWRTERAAREEVQAWREGRTGYPVVDAAMRQLRHEGWMHNRGRL 348

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL K L VDWR+G  +F+  L+DGDLA+N   WQW A TG DS P  R+ NP +QG
Sbjct: 349 LTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTGTDSRP-NRVLNPVVQG 407

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +RFDP+G ++R W+PEL  VP   +H P        + +  Y   +VD  +     L ++
Sbjct: 408 RRFDPEGAYVRRWVPELAEVPGAGVHEPWKLRGAAREAARGYAERVVDLAEG----LERF 463

Query: 475 YAAK 478
             A+
Sbjct: 464 RRAR 467


>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
 gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
          Length = 568

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 122/503 (24%), Positives = 202/503 (40%), Gaps = 32/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL +A   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++ K  +   +    ++S        I+        +     +A+I  +      +  V
Sbjct: 115 AVIMKLAKEGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSV 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228
              ++              Y   +++            ++P GE  AL  L +  + K +
Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAW 234

Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS +  + RL+E +  +         S   +
Sbjct: 235 VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPL-SLFGQ 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL 
Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLR 352

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W + +     
Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G FIR +LP L   P++YI+ P S  +      K  + ++YP
Sbjct: 412 QFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYP 471

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +A    + +     +Q
Sbjct: 472 KPIVNHAEASSMNIERMKQTYQQ 494


>gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
 gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
          Length = 477

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 145/443 (32%), Positives = 222/443 (50%), Gaps = 11/443 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              LVW R DLR+ DN A  AA      +VI V+I  PE+       A    + + SL  
Sbjct: 4   PTALVWFRRDLRLGDNPA-LAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSLAA 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L ++       Q  +     + L     +   T +F+NR+YE   ++RD+ ++++L
Sbjct: 63  LDSGLKKRNSRLIVRQGPSH----KALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQQL 118

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +      KS +  +L  P  I  +    Y+++TPF K  ++  +       P     +  
Sbjct: 119 RAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPVNR 178

Query: 187 PVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +    +            Q     +  GE  A      F +E +  Y ++RD P + GT
Sbjct: 179 QLQSEPLSTLGLLPKIPWDQEFYTHWTPGEAGAWRQWECFLEEALGKYHQERDRPDLPGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SPRQ   ++ +  +D   +  +G  ++L +L WREF  HL+  +P   
Sbjct: 239 SRLSPHLHFGEISPRQIAFQI-QIQMDRRAELTAGGQAYLRQLGWREFAYHLLYHFPETP 297

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +T           L AW+QG TG P++DA MR+L   GWMHNR+RMI AS L 
Sbjct: 298 EKPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMHNRVRMIAASLLT 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L + W+ GE +F   L+D DLASN  GWQW A  G D+ PYFR+FNP +QGK+FDP+G
Sbjct: 358 KNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFNPVLQGKKFDPEG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHS 445
            +++ W+PEL  +  Q+IH P  
Sbjct: 418 KYVQQWIPELRKISKQHIHEPWK 440


>gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2
 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
 gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
 gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
 gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
 gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
          Length = 593

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 83  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+    Q   +     +A+I  +         V + ++    
Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 198

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
 gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
          Length = 463

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 236/481 (49%), Gaps = 33/481 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWLR DLR+ DN ALY A       V+AV++   E+ + H +      +++ SL  + 
Sbjct: 5   QIVWLRRDLRMADNPALYHAAKA--GPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLG 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           KS   +       +     D++E L +         +  NR YE    +    L +    
Sbjct: 63  KSFGARNSRIVLRR----GDAVEELKTVANAVGAETVHANRHYEPWWRKAQGELAEE--- 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184
            +  K +D + L PPG +   +   YK+YTPF KA++Q +   D    P           
Sbjct: 116 -LELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRDEVPEPETLSSPGEWPA 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +   N+          +   + +GE  A   L     ++V  Y + R++P++  TSQ
Sbjct: 175 SDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLDW-WSDEVDKYDDGRNMPSVDETSQ 233

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303
           +SP+L  G +SP Q W+R K++  D       G  ++  ELIWR++ ++++  +P+    
Sbjct: 234 MSPHLHHGEISPVQIWHRFKDKRSD-------GWKTYEKELIWRDYAQNVICQFPAYPKE 286

Query: 304 -----GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    + W      +     L+ W++G TG+PI+DA MRQL   GWMHNR+RMI A
Sbjct: 287 SYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIAA 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+K LL+DWR GE++F   L+D D ASN   WQW + TG DS  + RI  P  Q ++F
Sbjct: 347 SFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSEKF 406

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G +IR ++PEL ++P + IH P     K D   +YP  I+ HK+     L  Y   K
Sbjct: 407 DAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAYSEFK 462

Query: 479 K 479
            
Sbjct: 463 N 463


>gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa]
          Length = 676

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 216/488 (44%), Gaps = 25/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  SL  +
Sbjct: 8   CSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      + +   DS+  L         T++F+N  Y+   + RD   ++ L 
Sbjct: 66  DSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I     +S L   P  + +   Q +  +  F +  +          LP   I     
Sbjct: 123 AQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLPPKRIIPGDV 182

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    F+   +      +   +  G  NA   L  F    +  Y + R       T
Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G +S ++  + ++ +      +     +     +L  +  RE+ R++   +
Sbjct: 243 SFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 303 P-YSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  +G + 
Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKC 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469
           DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A      
Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEE 481

Query: 470 TLNQYYAA 477
            L Q +  
Sbjct: 482 ALIQMWQL 489


>gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 508

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 187/488 (38%), Gaps = 27/488 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +VW + DLR+ D+ AL  A   +   V+ +++  P  W    +S +   F+  SL 
Sbjct: 1   MTLSVVWFKRDLRLHDHAALTLAA--ARGPVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L+++G            + ++ LD+   Q  +  LF + +   +   +  L   R
Sbjct: 59  ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAHEETGNDISYQRDLAVGR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                     + +       + +             +A +   V A       PA+  + 
Sbjct: 115 WCRTHQVGWHESAQFGVVRRLQDRDKWQRHWEAHVAQACLPIPVLAFAACPLTPAVLPSS 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244
                                   G + A+ +L+ F  ++   Y      P    T+   
Sbjct: 175 DA--------LGLAPDDPPLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAPTACSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEE---FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSPYL+ G LS R+  +  +++         + K+G   + + L W   +   +   P++
Sbjct: 227 LSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLESEPAL 286

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +    E + +     A   G TG+P++DA +  L   GW++ R+R +  S  
Sbjct: 287 EYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAMLVSVA 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L + WR    +   Q LD +   +    Q    +G   +   RI+NP  Q    DP 
Sbjct: 347 AYPLWLHWRPVGLWLARQFLDYEPGIHWS--QLQMQSGTTGINVPRIYNPIKQAHDHDPH 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G F+R WLP +  VP  ++  P     +        +  +  +P+VD ++A     ++ +
Sbjct: 405 GHFVRRWLPAMRKVPDAWLFEPWRMPAELQARYGVVVGHDIAMPLVDLEQATRLAKDKLF 464

Query: 476 AAKKQSLL 483
             + Q  +
Sbjct: 465 GLRAQPAV 472


>gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
 gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 24/471 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++D+         +D  V+ +F+  P  W        +  ++  SL  +
Sbjct: 2   TSVLWFRRDLRLSDHP--ALLAAAADGDVLPLFVIDPALWG--PSGDVRRTYLLRSLRSL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L   G      +     D    +D    +   +++           RRD  + + L 
Sbjct: 58  DAAL---GGALVVER----GDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALA 110

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                         + PG++   +   ++V+TPF +A   +   A   S    A+R  G 
Sbjct: 111 AGGRELVRTGTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADSPG--AVRWVGD 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +   + D P      +   GE  A     +F    +  Y   RD P   GTSQLS 
Sbjct: 169 GEGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSH 228

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L  G L PR     L+        +   GA ++  EL WR+FY  ++   P     + +
Sbjct: 229 ALKWGELHPRTLLAALR-------GQSSKGAETYATELCWRDFYADVLWHRPDSAR-EYY 280

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P    + + +     +AW +G TGFPI+DA MRQ+  +GW+HNR+RMITASFLVKDL V
Sbjct: 281 KPQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHV 340

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +W+ G   FM  L D DLASN  GWQW A +G D+ P+FR+FNP  QG+RFDP G ++R 
Sbjct: 341 EWQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRR 400

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++PEL ++P + +H P    D       YP  IVDH       L +Y   +
Sbjct: 401 FVPELRHLPGKSVHTPWEAADGYAHG--YPERIVDHAHEREVALAEYARVR 449


>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
 gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
          Length = 442

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 209/473 (44%), Gaps = 33/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL 
Sbjct: 1   MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L  + +V               +         + +  +  +     RRD  +   
Sbjct: 56  VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V   +     L+PPG +       Y+V+TPF +       +   ++    A  L  
Sbjct: 109 L-ASVPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDP 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                        P          GE  A +  + F    +  Y + R  P I+GTS++S
Sbjct: 168 ARLGITACEI---PDPGATLDLAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     L            +GA ++L EL +R+FY  ++   P+      
Sbjct: 225 AHLKFGTIHPRTLVADL--------DLRTAGARAYLRELAFRDFYADVLHHRPASAWRNW 276

Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       ++     +AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKD
Sbjct: 277 NSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +
Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL      ++          +    YP PIVDH       L +Y + 
Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYPAPIVDHATERAEALRRYRSM 442


>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 486

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 46/478 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60
            A     V + W R DLR+ DN ALY A  + + +V+ +FI   E   +       +  F
Sbjct: 50  NAKQKRKVSIFWFRRDLRLNDNTALYNALKSQN-EVVPLFIFDTEILDKLEDKKDARVEF 108

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I+  ++++Q+ L Q G        +              +  +  ++ NR YE +  +RD
Sbjct: 109 IHLYIMKIQEQLKQVGSTLIVKHGTVD----NAFKELVSEFDIQSVYVNRDYESSAKQRD 164

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + ++K ++     + +D    +    S  N     YKV+TP+ K  +  L   D    P 
Sbjct: 165 ERIKKYVKQSANAEFYDFKDQVIFEASSTNKDGSPYKVFTPYSKKWLSILTSEDYSCRPS 224

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            ++           P       + I                +  ++ V  Y + RD P+I
Sbjct: 225 ESLMEKF----WKSPERKVMSLEEIGFEKAG----IPFPSVELNEKIVKNYDKTRDTPSI 276

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GT+++S +L  G +S R    R K               ++LNELIWR+ +  ++    
Sbjct: 277 EGTTRMSVHLRFGTVSIRDLVRRSKGLNA-----------TYLNELIWRD-FYMMILDQF 324

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  F P  +K+ W  +     AW +G TG+ ++DA MRQLN  G+MHNR+RM+ AS
Sbjct: 325 PHVENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMHNRVRMVVAS 384

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFNP  Q K+FD
Sbjct: 385 FLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFNPDSQQKKFD 444

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P  T+I+ W+    ++ T+                 YP PIVDHK A    L  +  A
Sbjct: 445 PNYTYIKTWI---KDLNTK----------------TYPKPIVDHKLARERCLQAFKKA 483


>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
 gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
          Length = 463

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 143/475 (30%), Positives = 219/475 (46%), Gaps = 22/475 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++WLR DLR+ DN ALY A       V+ V++   E    H +      +++ SL  + 
Sbjct: 5   QILWLRRDLRMADNPALYHAAKA--GPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLS 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           KSL  +       +     D++E L +         +  N  YE    +  K     L+ 
Sbjct: 63  KSLGTRNAKLILRR----GDAVEELTTVANAVGADTIHANTHYEPWWRKAQKK----LKD 114

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIRL 184
            +  + +D   L P G +   +   YK+YTPF KAL Q L   D+   P           
Sbjct: 115 EIDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDVLPEPETLSSPDDWPA 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +   N+          I   + +GE  A   L    ++ V  Y ++R+ P++  TS+
Sbjct: 175 SDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLS-EWEDHVADYEDKRNFPSVDKTSR 233

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SP Q W+ LK +  D        +     +        +      +    
Sbjct: 234 LSPHLHFGEISPVQVWHALKHKRSDG--WNSFESELIWRDYAANVICEYPAYASENYRED 291

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              + W +     K +  L+ W++G TG+PI+DA MRQL   GWMHNR+RMITASFL+K 
Sbjct: 292 YDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMITASFLIKH 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE++F   L+D D +SN   WQW A TG DS  + RI  P  Q ++FD    +
Sbjct: 352 LLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSEKFDA-AAY 410

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR ++PEL ++   YIH P    +   L   YP  ++ HK+     ++ Y   K 
Sbjct: 411 IREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSAYKDMKN 462


>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
          Length = 593

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 83  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+    Q   +     +A+I  +         V + ++    
Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 198

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKRVKRNSTPPL-SLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
 gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2
 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
          Length = 594

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 192/494 (38%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 23  SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 82  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++S        I+    Q   +     +ALI  +         V +  +    
Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCR 197

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDKHLERKAWVANYERPRM 257

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 316

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +         + ++YP PIV+H + 
Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAET 494

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 495 SRLNIERMKQIYQQ 508


>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens
           ATCC 23877]
          Length = 457

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 203/473 (42%), Gaps = 20/473 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V    DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++                E +           L        +           
Sbjct: 60  DLDASLRRRAGRLVVRSGPVVRVVREVVAECGA--GEVHLAAGVTAYAHHREERLREGLG 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                +      + ++ PG++       + V+TP+ +   +  ++    +     +    
Sbjct: 118 GSGVALHAHETVTTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAPRTVRV---- 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245
           P      P           P  P G + A                E R D  A   TS+L
Sbjct: 174 PDGVRGGPLPDRAEVPGTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDDLAGDATSRL 233

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G LS  +  +R +            GA +++ +L WR+F+  ++A  P      
Sbjct: 234 SPYLHFGALSAVELVHRARRRGG-------PGAEAFVRQLCWRDFHHQVLAARPKASAED 286

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                         +  + AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K L
Sbjct: 287 YRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTKTL 346

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +QG+RFDP G ++
Sbjct: 347 YVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGRRFDPDGAYV 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             W+PEL +V  + +H P    +    +L+YP P++D        L+++  A+
Sbjct: 406 HRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLIDLADG----LDRFRHAR 454


>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
 gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
          Length = 482

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 228/482 (47%), Gaps = 22/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA H S  KV+ +F       ++  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q     +  + +    +  +   +F+N   E     RD  +   L+  
Sbjct: 65  RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I        LL  P  I       Y VYTPF K  +       + +LP+ ++     +T
Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNA------------LHILRKFCKEKVYYYVEQRDIP 237
                         +     +G                   L  FC   +Y Y +QR+ P
Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMA 296
           A+ GTSQLS  L  G +  R  W            +  +    +W  EL WREFY+H M 
Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVWQATVTVMEKCHTEAARINIQTWQQELAWREFYQHAMY 300

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +  G  +    +   W+ +  L QAW +G TG+PIIDAAMRQ+N  GWMHNR RMI
Sbjct: 301 NFPELANG-AYREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCRMI 359

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL+++W+ GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP  QG+
Sbjct: 360 VASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPFTQGQ 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDP+  +IR W+PEL  + T  + A          S+ YP PIVDH +        Y  
Sbjct: 419 KFDPKSEYIRKWVPELRWIDTASLLA-GKITPIERRSIGYPEPIVDHNQQQRRFKELYKQ 477

Query: 477 AK 478
            K
Sbjct: 478 QK 479


>gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor
 gi|414196|emb|CAA50898.1| photolyase [Sinapis alba]
          Length = 501

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 216/484 (44%), Gaps = 28/484 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +++SL   G      +  +   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLRQSLKALGSELTLIKTHS---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I     +    + PG        +  V     K  +   V++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLM 175

Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            L+   T                      +   +  G  NA  IL +F ++++  Y +  
Sbjct: 176 PLSAAETVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNS 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
                  TS LSPYL  G +S R+ +   + +      D   + +  A  +L  +  R++
Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMH
Sbjct: 296 SRIICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ N
Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIV   
Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVID 474

Query: 465 KACH 468
            A  
Sbjct: 475 TARE 478


>gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
 gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
          Length = 457

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 211/475 (44%), Gaps = 24/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G            +          +    ++           RR++ L +R
Sbjct: 60  DLDASLRRRGGRLVVRAGPVAGEVCAV----AAECGAAEVHMAAGVTAYAHRREERLRER 115

Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L    +           + PG++       + V+TP+ +   +  ++  L +     +  
Sbjct: 116 LGDGGVALRVHDTVVTAVAPGAVTPSGSDHFAVFTPYFRRWDRERLRKPLPAPRAVRV-- 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGTS 243
             P      P           P  P G + A                E   D  A   TS
Sbjct: 174 --PDGVRGRPVPERADVSGTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP +  +R +            G  +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPYLHFGALSPVELVHRAR-------GHGGPGGDAFVRQLCWRDFHHQVLAARPEASA 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G               +  + AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 GDYRTRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +Q KRFDP+G 
Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQAKRFDPEGA 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL +V  + +H P    +     L YP P++D        L ++  A+
Sbjct: 404 YVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLIDLADG----LARFKHAR 454


>gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
          Length = 536

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 141/477 (29%), Positives = 221/477 (46%), Gaps = 27/477 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RN+LR++DN  L  A       ++ VFI  P +       AR   +   SL  + 
Sbjct: 64  SIVWFRNNLRLSDNPPLREAAER--GPLLPVFIGEPSR-GASPEGARH-WWRARSLRCLD 119

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SLS+ G    + +     D    L     + ++ K+      + +  R    L+  L  
Sbjct: 120 HSLSRLGAPLLFLR----GDPAILLPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSG 175

Query: 130 RVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + +      +  L      P        +                 + A  R   +P  R
Sbjct: 176 KPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 235

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P      P   D+  +      P GE+ A   L  F ++++  Y  +RD      +S
Sbjct: 236 SETPEDWGWEPEKPDWAAEMRSFWDP-GEEGARRRLNAFLEKRLKNYAVKRDFLDEDTSS 294

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L+ G +S R  W  ++E        P+     +L+EL WREF  HLM  +P +  
Sbjct: 295 LLSPHLANGEISIRSVWWSIRESTA-----PEEDRAKFLSELGWREFSAHLMWHHPDLAT 349

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P      +I W +D   L AW++G TG P++DA MRQL  +G++ NR+RM+  SFLVK
Sbjct: 350 -QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAGSFLVK 408

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFNP +QG++FDP+G 
Sbjct: 409 NLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 468

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN--YPLPIVDHKKACHHTLNQY 474
           +++ +LPEL  +P +Y+H P +      D   +  +  Y  PIVD   +    L  +
Sbjct: 469 YVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQAW 525


>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
 gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
          Length = 455

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 204/469 (43%), Gaps = 20/469 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+     + +       LPPG ++  +   + V+TP+ +      ++  L     P    
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S+     +        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R +                ++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHE 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       +   H   AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K 
Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++D +G +
Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDSEGDY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +R W+PEL  +  + +H P     +      YP P+VD  +        
Sbjct: 405 VRQWVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 451


>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 488

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 133/491 (27%), Positives = 224/491 (45%), Gaps = 30/491 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           M+V L+W R DLR+ D++ L  AC    + +I ++   P  + +           ++ F+
Sbjct: 1   MAV-LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +++ L  +G      Q        + + +   +  V  ++ + +    E    +
Sbjct: 59  LESLADLRQQLRARGSDLVIRQ----GQPEQVIPALAREWGVKAVYAHEEVGTEEEAVAR 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL------QMYKVYTPFRKALIQNLVQADLR 175
            L++ LQ   I    +    L   + L  AL                KA I+  +     
Sbjct: 115 ALQQALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAKAAIRAPLPIPSL 174

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQ 233
               P +      T + +      P      ++  G   A   L+ +  +  ++  Y E 
Sbjct: 175 PPLPPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKET 234

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+LS +L++G LSPR  +  +K    + +       +  + EL+WR+++R
Sbjct: 235 RNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV--RNESTYWLVFELLWRDYFR 292

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++A + +       I     I W +D    QAW +G TG+P++DA MR+L   G+M NR
Sbjct: 293 FILAKHGAKLFCPAGIQGI-PIPWQQDGDRFQAWCRGETGYPLVDANMRELAATGFMSNR 351

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L +DWR+G E+F S L+D D+ASN G W + A  GND+   FR F+  
Sbjct: 352 GRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIP 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q + +DPQG ++RHWLPEL  +P   IH P+             L ++YP P+VD  K+
Sbjct: 411 KQSRDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDYPRPVVDLGKS 470

Query: 467 CHHTLNQYYAA 477
              +   Y AA
Sbjct: 471 LQASRRAYEAA 481


>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 483

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 126/485 (25%), Positives = 203/485 (41%), Gaps = 33/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62
           S  LVW+RNDLR+ D+  L  A  + D +VI V+   P  +         +S+ ++ F+ 
Sbjct: 3   STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++ S+   G      +        + L     Q    ++   ++    E   +  
Sbjct: 62  ESVQDLRDSVQDLGADLVVRR----GRPEDILPELVRQTGANEVLQFQEIGGEEEDVETA 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVP 180
           +E  L+       F     L     +         KVYT FRKA+ +          P  
Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYYV 231
            + L   + P +IP   +  F     +   G           +       +  + +  Y 
Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237

Query: 232 EQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+       +++ S +L+ G ++PRQ    ++      +       +    ELIWR+F
Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNK--STYWMKFELIWRDF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + ++             I   +  +W       + W  G TG P +DA MR+LN  G+M 
Sbjct: 296 FSYVTWKAGERLFRPGGINGNDI-DWRYYDESFERWAAGTTGIPFVDANMRELNRTGYMS 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W + +  GND  P  R FN
Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q KR+D  G ++R+WLPEL +VP +Y+H PH    +        L  +YP P+VD  
Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKYGCVLGADYPKPVVDLD 472

Query: 465 KACHH 469
           K    
Sbjct: 473 KTYQR 477


>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
          Length = 534

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 469

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 149/478 (31%), Positives = 240/478 (50%), Gaps = 28/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +SF +++L  P ++ N   Q +++++ + +A+ +++    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                  +      GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLEELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR G+++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IR W+ EL +V T +IH P     +     NYPLPI+ H++  +  L  +   +
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRNRALRAWKEIR 467


>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
 gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
          Length = 534

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
 gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
          Length = 486

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +  +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERVGGRPLGGAAR-WW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
 gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
 gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
 gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
          Length = 526

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 195/492 (39%), Gaps = 32/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +  A++  +FI  P   +   +S  +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L +        +        E       + +VT+L +    E    +RD  +EK    
Sbjct: 64  ENLKKINSRLFVVR----GKPAEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAE 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +      S  L     +          T  R   +   +    R +  P +       
Sbjct: 120 HDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPLGPPKRPIKAPTLENMKDCH 179

Query: 190 PSNIPRFF------------DYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQ 233
                 +               P +    ++P GE          +++      +   E 
Sbjct: 180 TPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVCNFKKPET 239

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                   T+ LSPY+  G LS R  W ++ + +            S   +L+WREFY  
Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGKK--HSDPPVSLHGQLLWREFYYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             A  P+    +   P   +++W+ +   L+AW +G TG+P IDA M QL T GW+H+  
Sbjct: 298 TGAGIPNFNKME-GNPVCVQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G W W +++      +FR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSASAFFHQ-FFRVYSPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P +YI+ P              +  +YP PIV+H   
Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVV 475

Query: 467 CHHTLNQYYAAK 478
               + +  AA 
Sbjct: 476 SKQNIQRMKAAY 487


>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
 gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
          Length = 476

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 148/491 (30%), Positives = 230/491 (46%), Gaps = 46/491 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +      +VWLRNDLR++DN AL AA    D  ++ V+I          + +    +
Sbjct: 1   MSRSENQP-SIVWLRNDLRLSDNPALTAATSE-DRPLVVVYIHDETGDGIRPLGSASKWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L + G             + + L +   +   T + +NR+Y        
Sbjct: 59  LHHSLTALDAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYTAARDIDA 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L     +  +  +S   ++L  P  I N   + YKV+TP+ +A  +  V+  LR+    
Sbjct: 115 GLKASLREQGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTT 174

Query: 181 AIRL------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            +R       +  +   N+        + +   +  GEQ A + L  F  E++  Y   R
Sbjct: 175 TLRWLAGSPASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADYHR-R 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRH 293
           D PA+  TS LSP+L  G +SP Q W RL+     D+    ++    +L+E+ WREF   
Sbjct: 234 DEPAVDATSGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTA 293

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLL------------QAWKQGYTGFPIIDAAMR 341
           L+   P +     + P      W      +            +AW++G TG P++DA MR
Sbjct: 294 LLFDNPRLATD-SYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMR 352

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G MHNR+RM+ ASFL+K+LL+DWR GE++F   L+D D ASN   WQW A +G D
Sbjct: 353 ELWHTGTMHNRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGAD 412

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFR+FNP +Q K+FDP G ++  W+PEL                    + NYP PIV
Sbjct: 413 AAPYFRVFNPILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIV 453

Query: 462 DHKKACHHTLN 472
           D  +     L 
Sbjct: 454 DLAETRREALE 464


>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
 gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
          Length = 488

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 235/491 (47%), Gaps = 30/491 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  LVW R DLR  D+ ALY A      KV  VF+           + R+  FI  +L++
Sbjct: 6   ATGLVWFRRDLRACDHAALYHALTQC-RKVHCVFVFDRAILDALPRADRRVAFIREALVE 64

Query: 68  VQKSLSQKGIV----FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  +L                     + + +       +   ++ N   E   + RD L+
Sbjct: 65  LDAALRTLASHPAGGLIVRHAL----ATDAVPELAQALQAQAVYANHDDEPQALSRDSLV 120

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRS 176
             RL    I   +F D  LL    +L  A   Y V+TP++ A ++ +          +R 
Sbjct: 121 RTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQLQSYAVVRH 180

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               A R      P        +      P+      +    L +   ++++ Y + RD 
Sbjct: 181 AHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFLQRIHRYADTRDY 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI+G S LS +L  G +SPR                   GA +WLNELIWR+FY  ++A
Sbjct: 241 PAIKGPSYLSVHLRFGTISPRLLARSAHALAQGGN----PGATTWLNELIWRDFYCQILA 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V + + F P  + I+W           AW +G TG+P++DAAM QLN  G+MHNRL
Sbjct: 297 HHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMAQLNQTGYMHNRL 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  
Sbjct: 356 RMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVS 415

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467
           Q ++FD +G FIR +LP+L  +P   +HAP              L  +YP PIVDH  A 
Sbjct: 416 QSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHHYPQPIVDHDSAR 475

Query: 468 HHTLNQYYAAK 478
             TL +Y   K
Sbjct: 476 QRTLQRYAVVK 486


>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
          Length = 486

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 227/494 (45%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A   S   VI  ++   E      +      +
Sbjct: 1   MSAVFSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L+ R I     ++ L   PG ++  + + Y+V+T + +A ++  V A   + P 
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174

Query: 180 PAIRLTGPVTPSNIPRFF---------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD P    TS+LSP++  G LS RQ W+   +              ++  EL WREF
Sbjct: 235 ATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQA-DLDTFCRELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 CYGQLYRFPDLARRN-LRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QGK+FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PIAQGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ +   +
Sbjct: 473 AARKRALDAWVTVR 486


>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
 gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAPRAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
 gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
          Length = 434

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 139/479 (29%), Positives = 211/479 (44%), Gaps = 49/479 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       V + W R DLR+ DN     A    D  V+ +FI   +   +   +  +  F
Sbjct: 1   MSKK----VSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTF 55

Query: 61  IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           I+ +L +++K L                D   +   S     ++ ++F NR YE     R
Sbjct: 56  IFETLQEMRKELQDDYDSSLAMFH----DTPEKVFKSLVKDYQIQEVFTNRDYEPYAKER 111

Query: 120 DKLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  +++ L    I  +      +     ++      Y VYTP++    +N        + 
Sbjct: 112 DTSIKELLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKD-HTLKIH 170

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +  L   V  + +P                                +  Y + R+ PA
Sbjct: 171 YTSQHLDNTVKNTRLPNVSLSEMGFKKSSIS-------FPEYDTSPTLIENYNDTRNFPA 223

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS LSP+L  G +  R+ + +  +   +          ++ NELIWREF+  ++  +
Sbjct: 224 KDGTSNLSPHLRFGTVGIRKIYKKAIDAKDE----------TFWNELIWREFFMQILYHF 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P   +   F    ++IEW  +    + WK G TG+P++DA MRQLN  G MHNR+RM+  
Sbjct: 274 PE-TVNNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVG 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q  +F
Sbjct: 333 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D   T+I HW+ E N                   +  YP  +VDHK+A    LN Y +A
Sbjct: 393 DKNKTYINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432


>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
          Length = 586

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 197/495 (39%), Gaps = 31/495 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R  LR+ DN AL AA  +    V  ++I  P       +   +  F+  SL  +
Sbjct: 11  CSVHWFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLEDL 69

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL + G      +        +       + RVT+L +    E     RD  + K  +
Sbjct: 70  DNSLRKLGSRLFVVR----GQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLAK 125

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    ++S        I+        +     + +I  +         +   ++   
Sbjct: 126 EAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQMEMC 185

Query: 188 VTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            T         Y   +++            ++  GE  AL  L K  + K +    +R  
Sbjct: 186 KTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAWVANYERPR 245

Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                     + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+ 
Sbjct: 246 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFY 304

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                 P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+ 
Sbjct: 305 TAATNNPKFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 363

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL + DL + W  G   F   LLD D + N+G W W + +      +F  + P
Sbjct: 364 ARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMWLSCS-AFFQQFFHCYCP 422

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
              G+R DP G ++R +LP+L   P++YI+ P +  +      K  + ++YP P+V+H +
Sbjct: 423 VGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAE 482

Query: 466 ACHHTLNQYYAAKKQ 480
                + +     +Q
Sbjct: 483 TSRLNIERMKQIYQQ 497


>gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max]
 gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 220/492 (44%), Gaps = 28/492 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        VI+VFI  PE+  Q+        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVISVFIWAPEEEGQYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G      + +   +SI  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRNLGSPLITKRST---NSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     +S L   P  + +   Q +  ++ F +  +          LP   I
Sbjct: 116 KEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S ++ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D     RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  +
Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474

Query: 466 AC-HHTLNQYYA 476
                 L Q + 
Sbjct: 475 VRLQEALIQMWQ 486


>gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
 gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
          Length = 493

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 103/477 (21%), Positives = 172/477 (36%), Gaps = 43/477 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLRI D++ L AA       V+ +++  PE W+Q   S RQ  F   SLL+++
Sbjct: 5   QIVWFKRDLRIVDHQPLAAAAER--GLVLPLYVVEPELWQQPDASERQWMFCRESLLELR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+ +G            D ++ L+    Q  +  L+ + +       +          
Sbjct: 63  QALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGAWAR 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R      +         + +      +            +++                  
Sbjct: 119 RHGIAWTEIPQFGVTRQMRSRNGWAKR--------WEVQMMEPITPVPAALQSLEGIDPG 170

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247
                   + P          G    L  L  F + +   Y      P    T    LS 
Sbjct: 171 VIPERPCRELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPNTAFTGCSRLSA 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ G LS R+                     +    +   E   H    +      +P 
Sbjct: 231 YLTWGCLSMREVLQT--------------SRTNSGRGVSSFESRLHWHCHFIQKLEDQPA 276

Query: 308 IPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           I +++   + +         L AW +G TG P +DA MR L   GW++ R+R +  SF  
Sbjct: 277 IEYSDFHPFMRGIRADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFAS 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG
Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQG 394

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FIR W PEL +VP  +IH P        L    P PIVD   +     ++ +  ++
Sbjct: 395 LFIRQWCPELKDVPKIHIHEPW------MLGGGMPPPIVDVTTSMQDAKDRIWEVRR 445


>gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 471

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 162/483 (33%), Positives = 235/483 (48%), Gaps = 29/483 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   ++W+RND R  DN AL  A ++   +  +I ++   PE  +    S     + ++S
Sbjct: 1   MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIKIETTSYA---YFFSS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123
           L    +S  +KG+   +     + + +   D+   +   + K++YN         +++ L
Sbjct: 58  LNSYYESCLKKGLDIYFL----YGEILTCFDTLLNEFSNIDKIYYNTIECGYGKSQEQKL 113

Query: 124 EKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + L+ + +         L     +L      YKV+T +    + +    +         
Sbjct: 114 NRFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKLS 173

Query: 183 RLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +         P   +   +       D     GE+ A   L  F   K+  Y E R+ P
Sbjct: 174 EIILSDFSKKDPIGKEKFIELRNLLNNDFSMFTGEEKARECLADFMNAKLCSYNENREYP 233

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            + GTS LS YL+ G LS R+ +N        L      G   ++ EL WR+FY  +  F
Sbjct: 234 FLDGTSHLSHYLTTGQLSVREVFNAATMMPFSL------GQEIFIKELAWRDFYNMIYYF 287

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +  I     I W  D      WK G TGFPIIDAAMRQL   GWMHNRLRMIT
Sbjct: 288 HPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLRMIT 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+KDLL+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFRIFNP  Q K+
Sbjct: 347 ASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQSKK 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471
           +DP+G FI+ ++ EL ++PTQYIH P  +  +       D+   Y  PIVDHK      L
Sbjct: 407 YDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQKAL 466

Query: 472 NQY 474
             +
Sbjct: 467 EMF 469


>gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria
           bacterium]
          Length = 485

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/484 (21%), Positives = 202/484 (41%), Gaps = 26/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VW++ DLR  D+++ + A  + +   + V+I   +       S R   FIY SL+ 
Sbjct: 5   AINIVWIKRDLRTLDHES-FHAAESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSLID 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K LS      +      +  S++       Q ++  +F  ++  I +  +  +  ++ 
Sbjct: 64  INKKLSSFNKEVEIL----YGPSLDIFKYLITQFKIENIFSYQESGIKQSWQRDIKVRKF 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +       +         I +        +      +I+N  +   +   +    L   
Sbjct: 120 CNENSINWVEFQRDGIIRGIKDRKNWNKNWHIQMHSQIIENSFKKQKKLKFLNKFPLPKK 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245
           +         +     ++   P GE  A   L+ FC +++  Y      P       S+L
Sbjct: 180 L--------INRINSNLNSFQPAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISCSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY+S G L+ +  ++ L    +    K      + ++ L W   +        +     
Sbjct: 232 SPYISWGNLNIKLVYHHL--IKLKKKNKNLRSINAVISRLHWHCHFIQKFEVDCTYETD- 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   ++   +   ++AW++G TG+P++DA+MR +   GW++ R+R +  SF V +L
Sbjct: 289 FINKGFNSLKRKTNIKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVSFFVHNL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR G  +   Q LD +   +   +Q  A  G   +   RI+NP    K  DP G FI
Sbjct: 349 DQDWRDGVYFLAKQFLDYEPGIHYTQFQMQA--GTTGINTIRIYNPVKNSKDHDPDGVFI 406

Query: 426 RHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+PEL N+P ++IH P       S + K  +  +YP PIV+ K+   H   + +   K
Sbjct: 407 KKWIPELKNIPKEFIHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEKIWGHLK 466

Query: 480 QSLL 483
             ++
Sbjct: 467 NKMV 470


>gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
 gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
          Length = 486

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum]
 gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum]
 gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum]
          Length = 682

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 138/493 (27%), Positives = 218/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  
Sbjct: 1   MSSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKN 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL Q+  SL   G      + +   DSI  L         T++F+N  Y+   + RD   
Sbjct: 59  SLSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     +S L   P  + +   Q +  +  F +  +          LP   I
Sbjct: 116 KEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +          +  G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S ++ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474

Query: 468 ---HHTLNQYYAA 477
                 L Q +  
Sbjct: 475 VRLEEALIQMWQL 487


>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
 gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
          Length = 497

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 141/487 (28%), Positives = 219/487 (44%), Gaps = 20/487 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VWLR DLR+ DN AL+ A       V+ ++I   E   +  +      +++ SL 
Sbjct: 1   MVCTVVWLRYDLRLIDNPALFHAAKR--GHVVIIYILDQETPGKWKLGKASLWWLHHSLK 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q  L +  I     + +   D +  L    LQ R   +++NR YE   V+RD+ +E+ 
Sbjct: 59  SLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEA 115

Query: 127 LQHRVICKS-------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           L+   +          ++   +            MY           +   +    +   
Sbjct: 116 LKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTLD 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             ++     +   +    D+  +    +   GE  A+  L++F K K+  Y + ++    
Sbjct: 176 IKVQTDTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWP 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TSQLS +L  G +SP   W+  KE    L   P   +  +L EL WR+F  HL+ +YP
Sbjct: 236 SKTSQLSTHLHFGEISPFVVWHTAKESVH-LRSVPSDSSQKFLTELGWRDFCFHLLHYYP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                K +    ++  W  D   L+ W+QG TG+PI+DA MR+L   G +  R+R I AS
Sbjct: 295 DFPE-KSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+ W+ G E+F   L+D DLA N+  WQ     G D   YF I NP  QG+RFD
Sbjct: 354 FLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFD 413

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
             G ++R W+PE+  +   YI  P              L   YP  IV+HKKA    L +
Sbjct: 414 SDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARDVALTK 473

Query: 474 YYAAKKQ 480
           +   K+Q
Sbjct: 474 FAPLKRQ 480


>gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 132/482 (27%), Positives = 215/482 (44%), Gaps = 27/482 (5%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA    +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
                 +     +++  +         TK+ +N  Y+   + RD  ++++L    I    
Sbjct: 59  SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTGPVTPSN 192
            +  L   P  I     + +  ++ + K  ++  +++         +P    T  V   +
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWACS 175

Query: 193 I------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           I                +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +    +K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A       + +  
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 476 AA 477
            A
Sbjct: 475 EA 476


>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
 gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
          Length = 486

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  R I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
 gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
          Length = 486

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +                    D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTLLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum]
          Length = 682

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 217/493 (44%), Gaps = 28/493 (5%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  
Sbjct: 1   MSSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKN 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL Q+  SL   G      + +   DSI  L         T++F+N  Y+   + RD   
Sbjct: 59  SLSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     +S L   P  + +   Q +  +  F +  +          LP   I
Sbjct: 116 KEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +          +  G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L    +S ++ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474

Query: 468 ---HHTLNQYYAA 477
                 L Q +  
Sbjct: 475 VRLEEALIQMWQL 487


>gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 702

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 133/482 (27%), Positives = 215/482 (44%), Gaps = 31/482 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     ++ L   P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G ++             +     +     +L  +  RE+ R++   +P     
Sbjct: 250 LSPHLHFGEVAW----------ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHE 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK 
Sbjct: 299 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G +
Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYY 475
           +R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L+Q +
Sbjct: 419 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 478

Query: 476 AA 477
             
Sbjct: 479 QL 480


>gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis]
 gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis]
          Length = 660

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 130/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL   G V    + +   DS+  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRA 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++ L  + I                   +                L+          +  
Sbjct: 116 KEVLTAQGIAVRSLT---------RICYMNPGXXCLSMPYDPEAPLLPPKRIISGDISRC 166

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +  +   +           +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 167 PSDTLIFED--ESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 224

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSP+L  G +S R+  + ++ +      +     +     +L  +  RE+ R+L   +P
Sbjct: 225 FLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHP 284

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 285 -YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 343

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  +G +FD
Sbjct: 344 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HHT 470
           P G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A       
Sbjct: 404 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEA 463

Query: 471 LNQYYA 476
           L++ + 
Sbjct: 464 LSEMWQ 469


>gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 514

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 174/475 (36%), Gaps = 24/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW + DLR+ D+ AL  A       V+ V+I  PE W+   +SARQ  F    +  + +
Sbjct: 8   LVWFKRDLRVADHPALARAAAL--GPVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G   +        +++  L+       +T +  + +                  R
Sbjct: 66  ELAALGAPLRIET----GEAVAVLERLRAAHGITLMISHEEIGNGWTY----------AR 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               +            L  +  + ++      A  ++   A  +        + G    
Sbjct: 112 DRAVADWARAQGVAWEELAQSGVVRRLNGRDGWARTRDRFMAQPQVAVPVLRGVDGGGGA 171

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPY 248
                               G   AL +L  F  E+   Y      P    +  S+LSP+
Sbjct: 172 LPDAAALGLADDPCPGRQRGGRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSPH 231

Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           L++G LS R+          ++            S+   L WR+ +   +   P +    
Sbjct: 232 LALGTLSGREAVQAAAMRKAEVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHAC 291

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               +        D   L AW +G TG P +DA MR L   GW++ R R +  +     L
Sbjct: 292 LHSAYEGLRPAVPDPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYHL 351

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR           D +   +    Q    +G   +   RI+NP  QG   DP+G F 
Sbjct: 352 WLDWRASGTILGRYFTDFEPGIHWP--QVQMQSGTTGMNTVRIYNPVKQGHDNDPEGVFT 409

Query: 426 RHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP +Y+  P  W    + L+  YP PIV+ K A     ++ +A ++
Sbjct: 410 RRWLPELAEVPDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464


>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
 gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
          Length = 519

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 194/500 (38%), Gaps = 34/500 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS + + W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F+  +L
Sbjct: 1   MSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEAL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        E L     Q ++T+L +    E     RDK + K
Sbjct: 60  KDLDSSLKKLNSRLFVVR----GSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-----------FRKALIQNLVQADL 174
             +   +  +   S  L     +          T              K  I      D+
Sbjct: 116 LAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDM 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----LHILRKFCKEKVYY 229
           R +  P                      ++ P    G +          + +      + 
Sbjct: 176 RGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFE 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             +      I  T+ LSPY+  G LS R  W RL + +            S   +L+WRE
Sbjct: 236 KPKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVY--RGKTHSDPPVSLHGQLLWRE 293

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P+    +       +++W+ +   L AW++  TGFP ID  M QL   GW+
Sbjct: 294 FFYTTAVGIPNFNKME-GNSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWI 352

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++      YFR+
Sbjct: 353 HHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS-TFFHQYFRV 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           ++P   GK+ D  G +I+ +LP L   PT+YI+ P              +  +YP PIVD
Sbjct: 412 YSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVD 471

Query: 463 HKKACHHTLNQYYAAK-KQS 481
           H+      + +  AA  K+S
Sbjct: 472 HEVVHKKNILRMKAAYAKRS 491


>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 491

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 213/491 (43%), Gaps = 33/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ +Y A     A +I ++     Q++            +  F+  S+
Sbjct: 12  LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +        + +     +  +  ++++ +    E   +K +++
Sbjct: 71  ANLRQSLQDLGSNLIVRK----GYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQ 126

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   +               +     Q+ +V+T FRK + ++         P+  +  
Sbjct: 127 ALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPF 186

Query: 185 TGPVTPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                             P +              G +       +    K Y   E R+
Sbjct: 187 PNIELGKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLKEY--KETRN 244

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +S+ SP+L+ G LSPR  +  +++   +      +  +  + EL+WR+++R +
Sbjct: 245 GMLGADYSSKFSPWLAQGCLSPRYIYEEVQKY--EDARVKNNSTYWLIFELLWRDYFRFI 302

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            A + +    +  +   +   W +D    + W++  TG+P++DA MR++   G+M NR R
Sbjct: 303 CAKHGNKIFYESGLQGLDI-PWKEDKERFKLWQESKTGYPLVDANMREIAATGFMSNRGR 361

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q
Sbjct: 362 QNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
            K +DP+G ++RHWLPEL  +P   IH P              + ++YP P+VD  K+  
Sbjct: 421 SKDYDPKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPRPVVDFFKSVK 480

Query: 469 HTLNQYYAAKK 479
                Y +A K
Sbjct: 481 ANEKVYNSATK 491


>gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica]
 gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica]
 gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica]
 gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 130/482 (26%), Positives = 216/482 (44%), Gaps = 27/482 (5%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA    +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
                 +     +++  +         TK+ +N  Y+   + RD  ++++L    I    
Sbjct: 59  SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
            +  L   P  I     + +  ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +    +K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A       + +  
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 476 AA 477
            A
Sbjct: 475 EA 476


>gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica]
 gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 130/482 (26%), Positives = 216/482 (44%), Gaps = 27/482 (5%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA    +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
                 +     +++  +         TK+ +N  Y+   + RD  ++++L    I    
Sbjct: 59  SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
            +  L   P  I     + +  ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +    +K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A       + +  
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 476 AA 477
            A
Sbjct: 475 EA 476


>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
 gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
          Length = 476

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 162/477 (33%), Positives = 240/477 (50%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ +F   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSAARQKSP-KIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +     +  + +       + + +F+N   E     RD+ +   LQ +
Sbjct: 65  QYQQAGSQLLILR----GEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183
            I +      L   PG ++  +   YKV+TPF +   +   Q+ L+ L          + 
Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKLEGLKGLTEEELT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           LT      ++P      +   +P+    GE  A   L +FC   +  Y EQR+ PA+ GT
Sbjct: 181 LTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVDGT 240

Query: 243 SQLSPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W   L+        + +    +W  EL WREFY+H M F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  +        W  +    QAW +G TG+PI+DAAMRQLN   WMHNR RMI ASFL
Sbjct: 301 AEG-SYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR WLPEL +V T+++ +             YP PIVDHKK        +   +
Sbjct: 419 GEYIRQWLPELRSVDTEFLIS-GKIPSLERYQCGYPEPIVDHKKRQAEFKLLFQEVR 474


>gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina]
          Length = 591

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 132/482 (27%), Positives = 215/482 (44%), Gaps = 27/482 (5%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA    +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
                 +     +++  +         TK+ +N  Y+   + RD  ++++L    I    
Sbjct: 59  SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
            +  L   P  I     +    ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +    +K+       +    A  +L  +  RE+ R+L   +P     
Sbjct: 236 PYLHFGEISIRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A       + +  
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 476 AA 477
            A
Sbjct: 475 EA 476


>gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 216/490 (44%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      ++  L         T++ YN  Y+   + RD  ++  L   
Sbjct: 66  SLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELLGL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +     +  +  + +  ++  +       P   + ++G   
Sbjct: 123 GISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGIEN 182

Query: 190 PS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                         +  +     +   +  G +NA   L  F    +  Y + R   A  
Sbjct: 183 ICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVAGT 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLMA 296
            TS LSPYL  G +S R+ +  ++ + +    + KSGA   +N     +  RE+ R+L  
Sbjct: 243 TTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 362 VSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQ 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A    
Sbjct: 422 KYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECL 481

Query: 469 -HTLNQYYAA 477
              ++  +  
Sbjct: 482 DDAISTMWQL 491


>gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
 gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
          Length = 493

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 193/486 (39%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A  +S    + ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L   G          F D++    S  +Q ++  +F +++  +N            
Sbjct: 62  MNETLKAYGHRITVL----FGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQI--- 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               + +          G+++  A         +   +  ++   DL++  + ++     
Sbjct: 115 -ADWLHEQNITWFEFEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQTNLLHSLDAESL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
               + P  +    +    M   G Q A   L  F   +   Y      P    T+   L
Sbjct: 174 GCAFSPPSSWLSKCKG---MQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRTACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +  +    +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREVYQYLLKHWQVVG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    K     D   L AWK GYTG P+IDA MR L+  G+++ R+R +  SFL  
Sbjct: 289 VNRAYESLIKQSSTFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G       RI+NP  Q +  DP G 
Sbjct: 349 HMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPVKQAQEHDPDGA 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VPT  +  P +      +         Y  PIVD   A      + +A 
Sbjct: 407 FIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKDARERLWAW 466

Query: 478 KKQSLL 483
           +K++ +
Sbjct: 467 RKRADV 472


>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
          Length = 486

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 112/478 (23%), Positives = 183/478 (38%), Gaps = 34/478 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ L W R   R+ DN AL+ A   +  +V  VF+  P   +   +   + +F+  SL  
Sbjct: 5   SISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLESLKD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L   G      +        E L     + +VT+L Y    E     RD  +    
Sbjct: 64  LDEQLRGLGSRLYVLR----GKPEEQLPKKFKEWKVTRLTYELDTEPYARVRDAAINDLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +              ++  A  M      + K           +S  VP ++  G 
Sbjct: 120 KKHNV-------------EVIAEAGHMLHDPESYLKKCGGASKDRQDKSYDVPTLKEMGY 166

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                         +              H ++K      +   +         T+ LSP
Sbjct: 167 SPIKAPQMVLFPGGEREALKR------LEHFIKKKNWIATFEKPKTNPAALDPDTTGLSP 220

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y+ +G LS R+ W  +++ + +          S   +L++RE +        +    K  
Sbjct: 221 YMKMGCLSVRKFWYDVQKVYDEKKDHSTPP-ESLHGQLLFRELFHLCGYAVKNFDKMK-G 278

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                +I+W+     L AW+   TG+P IDA M QL   GWMH+  R   A FL + DL 
Sbjct: 279 NRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAVACFLTRGDLY 338

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W  G   F   L+D D   NN  W W + +      YFR+++P   G+++D +G FIR
Sbjct: 339 QSWEHGARIFEKHLVDADWHLNNANWMWLSCSSFFYQ-YFRVYSPIGFGQKYDKEGAFIR 397

Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +LP L ++P +YI+ P           K  +  +YP PIVDH        ++  A  
Sbjct: 398 KYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIGKDYPEPIVDHSDVSETNKDRMKACY 455


>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
 gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
          Length = 484

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 228/478 (47%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR +DN  L  A      KV+ VF   P    Q  I+  +  ++   L  ++ 
Sbjct: 11  LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             SQ G           D+ +  + +         +F+N   E     RD+ +   L+ R
Sbjct: 70  LYSQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 125

Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I     +       P +IL+ A   Y VYTPF K          +  L           
Sbjct: 126 GIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEILANCENLTAREE 185

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +        P         + + +   GE  A   L  F    +  Y E+R+ PAI G
Sbjct: 186 EIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 245

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  GV+  R  W + +E       +   +G  +W  EL WREFY+H M  +P 
Sbjct: 246 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 305

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASF
Sbjct: 306 LAEG-AYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 364

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP+ Q ++FD 
Sbjct: 365 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDS 423

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IRHW+ EL +V T+Y+    +       S+ YP  IVDHKK        Y   K
Sbjct: 424 DGEYIRHWVGELASVETEYLIG-GNITPLERQSVGYPTSIVDHKKQQALFKQLYQQQK 480


>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
 gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
          Length = 914

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 222/477 (46%), Gaps = 23/477 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN A   A  N+ A VI VFI  PE+  Q         +   SL+ +
Sbjct: 15  TAVVWFRRDLRVDDNPA-LEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDL 73

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q++L+  G      + +   DS   L     + R   +F+N  Y+   + RD   ++ L 
Sbjct: 74  QQALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLA 130

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     +  +   P  +L+   Q Y  +  F  ++    V          A+     
Sbjct: 131 AAGVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPA 190

Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             PS +    D+ F          +   +  G   A+  L +F  E+++ +   R     
Sbjct: 191 FVPSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDR 250

Query: 240 QGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             TS+LSP++ IG +S R  +    + + E++   +        +L ++ +RE+ R+L  
Sbjct: 251 DSTSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSF 310

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R++
Sbjct: 311 HFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVV 369

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK+LL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + +
Sbjct: 370 AASFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEAR 429

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           RFDP G ++R WLP L+ +PT+YIH P             +L  NYP PI+ H  A 
Sbjct: 430 RFDPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDAR 486


>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 479

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 164/482 (34%), Positives = 221/482 (45%), Gaps = 23/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN    AA   +   V  VF+  P       ++  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLVDNLG-LAAAAAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      Q     D  E L           + +NR  E     RD+ +   LQ +
Sbjct: 66  SWRKAGSQLLLLQ----GDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121

Query: 131 VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 D   LL     L       Y+VY PF++     + +        P     G + 
Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181

Query: 190 -----------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                      PS       +    + P  P        +        +  Y   R++P 
Sbjct: 182 YDGELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPGRNMPG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             GTS LS  L  G LSPRQ W+  ++        + +     W  EL WREFY+  +  
Sbjct: 242 EAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQQALFH 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+ P  +   W  D    QAW  G TG PIIDAAMRQLN  GWMHNR RMI 
Sbjct: 302 FPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNRCRMIV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+LVKDL+ DWR+GE  FM++L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 361 ASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+G +IR WLPEL++V T+ + +      +      YP PIV HKK   H    Y + 
Sbjct: 420 FDPEGDYIRRWLPELSHVNTKDLLSGEITPMER---RGYPAPIVSHKKQQAHFKALYASL 476

Query: 478 KK 479
            K
Sbjct: 477 PK 478


>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca]
 gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca]
          Length = 645

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 29/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++      +VW R DLRI DN     A    D  V  V+I  P+             +
Sbjct: 1   MGSSNK---TIVWFRRDLRIEDNP--ALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +    D ++  L         TK+ +N  Y+   + RD
Sbjct: 56  LKQSLAHLDQSLKSLGAQLALIKT---DSTVSALLDCIQAIGATKVVFNHLYDPVSLVRD 112

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ +L    I     ++ L   P  + +   Q +  +  +    +    +      P 
Sbjct: 113 HNIKGKLVELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMERELVTFLPPW 172

Query: 180 PAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             ++ TG V   +                 +   +  G   A   L +F    +  Y + 
Sbjct: 173 KLLQATGMVAKYSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKN 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
           R       TS LSPYL  G +S R+ +   + +      +     +     +L  +  RE
Sbjct: 233 RTKLGGNSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R++   +P     K  +       W  D    +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 FSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   L+D DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
           +P +QG +FDP G ++RHWLPEL  +PT++IH P    D        +L +NYP PI++ 
Sbjct: 412 SPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPIIEI 471

Query: 464 KKACHH---TLNQYYAA 477
             A       + + +  
Sbjct: 472 DLARERLTEAIFKMWEI 488


>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
 gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
          Length = 598

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 197/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  Q 
Sbjct: 64  TSLRKLNSRLFVVR----GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +     ++     P  I+        +     +A++  L         +   ++    
Sbjct: 120 YGVETVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCR 179

Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235
           T  +      Y   +++            ++  GE  AL  L K    K +    +R   
Sbjct: 180 TQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFERPRI 239

Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  +  L++ F+ L  +      S   +L+WREF+  
Sbjct: 240 SGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPL-SLFGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W+ +   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AGTNNPNFDHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             G+R DP G +IR ++P+L + P +YI+ P +  +         + ++YP P+++H ++
Sbjct: 417 GFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHAES 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQVYQQ 490


>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
          Length = 643

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/501 (22%), Positives = 195/501 (38%), Gaps = 35/501 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+ + + W R  LR+ DN AL  A  +SD  V  V+   P       +   +  F+   L
Sbjct: 1   MTKNSIHWFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +                   +++L +    E     RD  ++K
Sbjct: 60  EDLDSSLRKLNSRLFVIR----GQPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + L+ ++   D     +    +
Sbjct: 116 LATEAGVEVVSRISHTLYDLDKIIELNGGHPPLTFKHFQTLVDSMPPPDAPVEALSRASM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKF-------CKEK 226
              VTP +      Y    ++            ++P GE  AL  + +          + 
Sbjct: 176 GRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRIERQLGPDLSTAWQV 235

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +    +   P +     LSPYL  G LS R  +++L E +  +         S  ++L+
Sbjct: 236 NFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKTNGSPPI-SLYDKLL 294

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P         P   +I W++++  L  W +  TGFP IDA M QL   
Sbjct: 295 WREFFYTAATNNPRFDKMD-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMTQLRQE 353

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W   + +      +
Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQF 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
           F  + P   G++ DP+G FIR +LP L ++P +YI+ P +         K  + ++YP P
Sbjct: 413 FHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGVDYPKP 472

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 473 MVNHAEASRLNIERMRQMYQQ 493


>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
 gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
           Synechococcus sp. (Anacystis nidulans)
 gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
 gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase  RECEIVED X-Rays Dose 1.2 Exp15
           PhotonsMM2
 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase  RECEIVED X-Rays Dose 4.8 Exp15
           PhotonsMM2
 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase  RECEIVED X-Rays Dose
           1.2 Exp15 PhotonsMM2
 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase  RECEIVED X-Rays Dose 4.8
           Exp15 PhotonsMM2
 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
 gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
 gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
          Length = 484

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 21/478 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA     A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183
            I      D +L  P  IL+ +   Y VY PF K          + +           + 
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  S +P      F          GE  A+  L++FC   +  Y  QR+ PA  GT
Sbjct: 181 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS+
Sbjct: 241 SGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RMI ASFL
Sbjct: 301 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD  
Sbjct: 360 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 418

Query: 422 GTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            T+I+ WLPEL +V P   I    + +++      YP PIV+H          Y   K
Sbjct: 419 ATYIKRWLPELRHVHPKDLISGEITPIER----RGYPAPIVNHNLRQKQFKALYNQLK 472


>gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
 gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
          Length = 479

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 200/475 (42%), Positives = 267/475 (56%), Gaps = 11/475 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +   VW R DLRI DN AL AA  N +   IA+++ +  QW++H  S+ Q   I   LL+
Sbjct: 6   TTQCVWFRTDLRIADNPALSAALANQE-PTIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L +  +      C  F ++ E L   C    +T LF N++YE +E+ RD  +  +L
Sbjct: 65  LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIR 183
            +      ++    +  G I+N   + YKV+TPF+KA      Q+    +     VP   
Sbjct: 125 TNI-ESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  S + R F         ++P+     L  +R FC+EK   Y +QRD PAI GTS
Sbjct: 184 QQLSTLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDGTS 243

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           Q+SPYL+IG LS +QC        ++   +   G   WL+ELIWREFY HL+ F+PS+  
Sbjct: 244 QISPYLAIGALSAKQCI---LRLHLEANNQLSQGQEIWLDELIWREFYTHLLYFFPSLSK 300

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F+ + + I+WN      + W  G TG+PI+DAAM+QLNT GWMHNRLRMITASFLVK
Sbjct: 301 NHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFLVK 360

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD  G 
Sbjct: 361 DLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNNGV 420

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FI++WLP L  +  + +H P           NY  PIVDH      TL  Y  AK
Sbjct: 421 FIKYWLPNLAALLGKQLHQPSVKPLLK--PDNYVDPIVDHSVQRLKTLELYKQAK 473


>gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max]
 gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 222/498 (44%), Gaps = 30/498 (6%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVCVFIWAPEEEGQYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L   G      + +   +SI  L         T+LF+N  Y+   + RD   
Sbjct: 59  SLAHLDSYLRNLGSPLITKRST---NSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKA 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L  + I     +S L   P  + +   Q +  ++ F +  +          LP   I
Sbjct: 116 KEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    F+   +      +   +  G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP+L  G +S ++ ++ ++ +      +     +     +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
            G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  +
Sbjct: 415 VGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474

Query: 466 AC-HHTLNQYYAAKKQSL 482
                 L Q +  ++++ 
Sbjct: 475 VRLQEALIQMW--RQEAA 490


>gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
 gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
          Length = 488

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 174/484 (35%), Gaps = 23/484 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVWL+ DLR+ D+  L AA     + ++ ++   PE       S R   F++ SL 
Sbjct: 1   MNT-LVWLKRDLRLQDHAPLRAAIAAGSSTLL-LYCFEPELLSDPHYSDRHWRFVWQSLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++SL  +             D  E         ++ +++   +  + +          
Sbjct: 59  DMRRSLGPQASALHV----CLGDPREIFARLLQDGQLQRVYSYEETGLAKTFARDRDVAA 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +         +           N                                     
Sbjct: 115 MLQSHGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPC-----DTTNPQEIYSNAAAGS 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            +   ++         +       GE  A   LR F + +V  Y      P  + +  S+
Sbjct: 170 TLKAFHLTDPPQSWTASHKDFQTGGESTARRTLRDFLERRVSGYARNISKPLASRESCSR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G LS RQ +  L E        P     ++ + L W   +         +   
Sbjct: 230 LSPYLAWGNLSIRQVYQALGEAQNRGG--PSRALQAFESRLHWHCHFIQKFEMECRMEH- 286

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +                 ++AW QG TG+P+IDA+MR L   G+++ R R +  SFL   
Sbjct: 287 EDINRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHH 346

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWR+G  +     LD +   +    Q  A  G   +   RI+NP  Q +  DP G F
Sbjct: 347 LWQDWRVGAAHLAGLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEEHDPDGVF 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN---YPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+PEL  VP   IH P        +   L+   Y  PIVD  +      ++ +A K 
Sbjct: 405 IRQWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARDRLWALKD 464

Query: 480 QSLL 483
            S++
Sbjct: 465 DSVV 468


>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
          Length = 788

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/491 (25%), Positives = 191/491 (38%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     N+      VFI  P       +   +  F+   L  +  
Sbjct: 37  VHWFRKGLRLHDNPALREGLVNA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 95

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 96  SLKKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKCREV 151

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     +ALI ++        P+    L G  T
Sbjct: 152 GINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNGAKT 211

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P ++     +    ++           PM+  GE  AL  L +  + K +     R    
Sbjct: 212 PVSVDHDDRFGVPTLEELGFETEDLKPPMWMGGESEALARLDRHLERKAWVASFGRPKMT 271

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +  +         S   +++WREF+   
Sbjct: 272 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKKIK--RVRPPLSLHGQILWREFFYCA 329

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TG+P IDA M QL   GW+H+  R
Sbjct: 330 ATRNPNFDRME-GNPICVQIPWEKNQEALSKWANGQTGYPWIDAIMIQLREEGWIHHLAR 388

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   +LD D + N G W W + +      +F  + P  
Sbjct: 389 HAVACFLTRGDLWISWEEGMKVFDELMLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 447

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YPLP++DH KA 
Sbjct: 448 FGRKTDPNGDFIRKYIPALKNMPTRYIHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKAS 507

Query: 468 HHTLNQYYAAK 478
              L +     
Sbjct: 508 QINLERIKQVY 518


>gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max]
          Length = 600

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 138/489 (28%), Positives = 221/489 (45%), Gaps = 23/489 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI DN AL AA    D  V  V+I  P++  Q         ++  SL 
Sbjct: 3   MNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSLA 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL   G      +    D ++E L       + TK+ +N  Y+   + RD  ++++
Sbjct: 63  HLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEK 119

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVP 180
           L    I  KS++  +L  P SI +     +  + PF    +   ++          L   
Sbjct: 120 LVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAFSLIPPQLILAEG 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +                     +   +  G       L +F ++ + +Y + R      
Sbjct: 180 KVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVGGD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPY+  G LS R+ +   + +      +     +  A  +L  +  RE+ R+L  
Sbjct: 240 STSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYLCF 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +PS    KP +       W  D    +AW+QG TG+P++DA MR+L   GW+HN++R+I
Sbjct: 300 NFPSTIE-KPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ +    D     R+ +P I G 
Sbjct: 359 VSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIHGA 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           +FDP+G ++R WLPEL  +P ++IH P +           +L  NYP PI+D  +A    
Sbjct: 419 KFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQAREQL 478

Query: 469 -HTLNQYYA 476
              + + + 
Sbjct: 479 TEAIFKMWE 487


>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
          Length = 606

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/502 (23%), Positives = 200/502 (39%), Gaps = 35/502 (6%)

Query: 6   AMSV----HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           AM+V     + W R  LR+ DN +L AA   +   V  V+I  P       +   +  F+
Sbjct: 29  AMAVDGGSSVHWFRKGLRLHDNPSLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFL 87

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL +        +        +       +  VT+L +    E     RD 
Sbjct: 88  LQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 143

Query: 122 -LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++   +  V   + +   L     I++   Q   +     +A+I  +       + V 
Sbjct: 144 AIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVT 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYY 229
           + ++              Y   +++            ++  GE  AL  L K  + K + 
Sbjct: 204 SQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWV 263

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              +R            + LSPYL  G LS R  + RL + +  +         S   +L
Sbjct: 264 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQL 322

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL  
Sbjct: 323 LWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQ 381

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A F  + DL V W  G   F   LLD D + N G W W + +      
Sbjct: 382 EGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQ 440

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458
           +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      +  + ++YP 
Sbjct: 441 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPR 500

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           P+V+H +     + +     +Q
Sbjct: 501 PMVNHAETSRLNIERMKQIYQQ 522


>gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
 gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
          Length = 548

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 153/490 (31%), Positives = 237/490 (48%), Gaps = 23/490 (4%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W   DLR+ DN  L  A      +   ++  ++  PE    H +   Q ++ + SL Q+
Sbjct: 63  HWFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQL 122

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L++  I     +     D I  +     +  V+ LF N +YE++E+R       +  
Sbjct: 123 QEKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFL 182

Query: 129 HRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180
              I  +   +  +         S           +  +   + Q L   +      P  
Sbjct: 183 EEKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIK 242

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA 238
              +L+       IP       +       IGE  AL  L ++ +       +  RD   
Sbjct: 243 LEKQLSVSQQDLEIPDVDVDKERFHKYWKMIGEDGALEQLAEYIESDEINKYKDERDFLD 302

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           ++  S +S ++S G +S R     L+  ++  +L     SG F W+ ++ WR+FY+H++ 
Sbjct: 303 LESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDFYKHIIC 362

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           ++P VCM KPF    + + W  D    + W  G TGFPI+DA MR LN  G+++NR R+I
Sbjct: 363 YWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLNNRGRLI 422

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+LL+DWR GE+YF+S+L+D D  SNNGGW +A+STG D  PYFRIFNP  Q +
Sbjct: 423 VASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFNPWTQSE 482

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFDP G FI+ W+PEL +V  + +H        + L  NY  PIV HK+     L +Y A
Sbjct: 483 RFDPDGEFIKKWVPELVDVSPKMLHK----ETSDPLCANYTAPIVSHKETRSRALEKYKA 538

Query: 477 A----KKQSL 482
           A    +K++L
Sbjct: 539 AMEEGRKKNL 548


>gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 493

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 175/474 (36%), Gaps = 33/474 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLRI D++ L AA       V+ +++  PE WRQ   S RQ  F   SLL+++
Sbjct: 5   QIVWFKRDLRIVDHQPLAAAVER--GLVLPLYVVEPELWRQPDASERQWMFCRESLLELR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+ +G            D ++ L+    Q  +  L+ + +       +          
Sbjct: 63  QALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGAWAR 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R      +         + +      +            + +                  
Sbjct: 119 RHGIAWMELPQFGVTRRMHSRNGWAKRWEV--------QMTEPITPVPAALQALDGIDHG 170

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247
                   +    A       G    L  L  F + +   Y      P    T    LS 
Sbjct: 171 VIPERPCSELLLDACPQRQIGGRSTGLEELNDFLQHRAQRYQRSMSSPNTAFTGCSRLST 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ G LS R+                  G  S+ + L W   +   +   P++     F
Sbjct: 231 YLTWGCLSMREVLQT-------SRTHSGRGVSSFESRLHWHCHFIQKLEDQPAIEFSD-F 282

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P+   I        L AW +G TG P +DA MR L   GW++ R+R +  SF   +L +
Sbjct: 283 HPFMRGIRAADA-ERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLWL 341

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG FIR 
Sbjct: 342 PWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQGLFIRQ 399

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W PEL +VPT +IH P        L    P PIVD   +     ++ +  ++ +
Sbjct: 400 WCPELKDVPTIHIHEPW------MLGGGMPAPIVDVTASMQDAKDRIWDIRRSA 447


>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
 gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
 gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
          Length = 500

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 216/493 (43%), Gaps = 31/493 (6%)

Query: 7   MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSH 59
           MS    LVW RNDLR+ D++ L +A  + +A+V+A++   P Q+ +           ++ 
Sbjct: 1   MSTKTVLVWYRNDLRVHDHEPLTSAL-HKNARVVALYCFDPRQFGKAPFGFEKTGPFRAR 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  S+  +++SL Q G      +        E + +   +  +  + Y+ +    E+  
Sbjct: 60  FLLESVADLRRSLRQLGSDLLVRR----GHPEEVIPALVSELEIAAVHYHGEVTSEELVV 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           ++ L+  L    +         L     L  A++         +  ++     +      
Sbjct: 116 ERDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAP 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYV 231
             +     V P  IP+  D   ++         Q                + K  +  Y 
Sbjct: 176 AKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYK 235

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+ +     +S+ S +L++G LS R    +++    +         +  + EL+WR++
Sbjct: 236 QTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQ--TYETKRIKNDSTYWLIFELLWRDY 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R + A +         +   +   W +D    + W+ G TGFP++DA MR+L   G+M 
Sbjct: 294 FRFIAAKHGDRLFYTAGLRGLDI-PWKEDWERFELWRTGQTGFPLVDANMRELAATGFMS 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L + W +G E+F S+L+D D+ASN G W + A  GND+   FR FN
Sbjct: 353 NRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG-FRFFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q + +DP G +++HWLPEL  +P   +H P   L          L ++YP P+VD  
Sbjct: 412 ILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVVDLF 471

Query: 465 KACHHTLNQYYAA 477
           ++       Y AA
Sbjct: 472 QSAAANEAIYNAA 484


>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
 gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
          Length = 472

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 159/476 (33%), Positives = 223/476 (46%), Gaps = 26/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR++D+ AL  A   S   VI VFI         G+       +   L    +
Sbjct: 8   LVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRDALV---DGLGTAPQWRLGLGLKSFAE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  KG             ++E L     +     ++++R Y+ + V RD  +++ L+  
Sbjct: 63  ALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETLKGD 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185
            I  +SF   +L  P ++       YKVYTPF KA+    V A                 
Sbjct: 119 GIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQAPATWPDG 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + +        + P   +GEQ A   L  F ++KV  Y   RD  +  GTS L
Sbjct: 179 ETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRDEVSKDGTSCL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G +SP QCW+       D       GA ++L EL+WREF  HLM   P +  G 
Sbjct: 239 SENLSLGEISPAQCWHAGCRAIEDGK----PGAETFLKELVWREFAYHLMWHTPRLLDGN 294

Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W     + ++    ++AWKQG TG P +DAAMR+L   G MHNR RMI AS+L K 
Sbjct: 295 WRQEWDGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARMIVASYLTKH 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+  W+IG  +F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FDP   +
Sbjct: 355 LMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQREKFDPDCAY 414

Query: 425 IRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +  W+ E    P+     Y  A P SW         YP PIVD K+     L+ Y 
Sbjct: 415 VTRWIAEGRKSPSDTALSYFDAIPESWPMAP--GDAYPDPIVDPKEGREAALDAYQ 468


>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
 gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
          Length = 480

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 152/485 (31%), Positives = 221/485 (45%), Gaps = 17/485 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ L W R DLR+ DN  L AA   +  KV+ +F   P       I+A +  ++   L 
Sbjct: 1   MSLRLFWHRRDLRLNDNLGLAAAYTRTP-KVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++  + G  F   +     D  + L           + ++   E     RD+ +   
Sbjct: 60  ALQEAYRRLGGSFLIFR----GDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ + I        LL P   +                   +L + +  S P     LT 
Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTE 175

Query: 187 PVT--------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                                   + D +   GE  A   L  F  + +  Y EQR+ PA
Sbjct: 176 IEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAF 297
             GTS LSP L  GV+  R+ W   +        +  +    +W  EL WREFY+H + +
Sbjct: 236 QPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALYW 295

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +   +P         W  +     AW +G TG+PI+DAAMRQLN  GWMHNR RMI 
Sbjct: 296 FPHLAE-RPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIV 354

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 355 ASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQK 413

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+  +IR WLPE+ ++ T  +    +          YPLPIVDH++        Y   
Sbjct: 414 FDPEAEYIRRWLPEVRSLDTIDLVT-GNISPLERHRCGYPLPIVDHRQQQQRFKQLYQEH 472

Query: 478 KKQSL 482
            +  +
Sbjct: 473 FRSPI 477


>gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
 gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
          Length = 475

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 149/487 (30%), Positives = 229/487 (47%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
              +VWLR +LR+ DNK+  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +            +   ++ +       ++  ++ +  YE N + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLVF----YGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L        + D +L+ P  +L    + YKVYTP+ +A  + +      S        + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177

Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKV----------YYY 230
            +                      + +  IG       L +    +             Y
Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD   + GTS +SPYL  G++S R+C+ +      +       G+ +W+NELIWREF
Sbjct: 238 KIDRDFLYLDGTSTISPYLRFGLVSIRECYRKAFNAASN------PGSITWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QGK FDP   +I+ +LP L NV    IH     ++ + +  NYP PIVD+  +    
Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467

Query: 471 LNQYYAA 477
           +  +   
Sbjct: 468 IEVFKGI 474


>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 442

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 207/473 (43%), Gaps = 33/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL 
Sbjct: 1   MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L  + +V               +         + +  +  +     RRD  +   
Sbjct: 56  VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G +       Y+V+TPF +       +  +++    A  L  
Sbjct: 109 LASVPLVATGSPYLVAP-GRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASARWLDP 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                        P          GE+ A +  + F    +  Y + R  P I+GTS++S
Sbjct: 168 ARLGITDCEI---PDPGATLDLAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR             L    + A ++L EL +R+FY  ++   P+      
Sbjct: 225 AHLKFGTIHPRTLV--------ADLDLRAAAARAYLRELAFRDFYADVLHHRPASAWRNW 276

Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                        +      AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKD
Sbjct: 277 NSAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +
Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL      ++          +    YP PIVDH       L +Y + 
Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYPAPIVDHATERAEALRRYRSM 442


>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
 gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
 gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
          Length = 730

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/491 (24%), Positives = 191/491 (38%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LRI DN AL     ++      VFI  P       +   +  F+   L  + K
Sbjct: 36  VHWFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 94

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 95  SLKKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREV 150

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +   S        I+        +     +ALI ++       + +    L G  T
Sbjct: 151 GITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAEVTITPQMLNGATT 210

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        +    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 211 PITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLERKAWVASFGRPKMT 270

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +  +         S   +++WREF+   
Sbjct: 271 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 328

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TG+P IDA M QL   GW+H+  R
Sbjct: 329 ATRNPNFDRME-GNPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQLREEGWIHHLSR 387

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 388 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWFSCSSFF-QQFFHCYCPVR 446

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YP+P+VDH KA 
Sbjct: 447 FGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKAS 506

Query: 468 HHTLNQYYAAK 478
              + +     
Sbjct: 507 QINIERIKQVY 517


>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
          Length = 474

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 21/478 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA     A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 5   LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 64  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183
            I      D +L  P  IL+ +   Y VY PF K          + +           + 
Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  S +P      F          GE  A+  L++FC   +  Y  QR+ PA  GT
Sbjct: 180 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 239

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS+
Sbjct: 240 SGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 299

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RMI ASFL
Sbjct: 300 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD  
Sbjct: 359 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 417

Query: 422 GTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            T+I+ WLPEL +V P   I    + +++      YP PIV+H          Y   K
Sbjct: 418 ATYIKRWLPELRHVHPKDLISGEITPIER----RGYPAPIVNHNLRQKQFKALYNQLK 471


>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
          Length = 598

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/494 (23%), Positives = 197/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  Q 
Sbjct: 64  TSLRKLNSRLSVVR----GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +     +S     P  I+        +     +A++  L         +   ++    
Sbjct: 120 YGVETVVRNSHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCR 179

Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235
           T  +      Y   +++            ++  GE  AL  L K    K +    +R   
Sbjct: 180 TQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFERPRI 239

Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  +  L++ F+ L  +      S   +L+WREF+  
Sbjct: 240 SGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPL-SLFGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W+ +   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AGTNNPNFDHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             G+R DP G +IR ++P+L + P +YI+ P +  +         + ++YP P+++H ++
Sbjct: 417 GFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHAES 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQVYQQ 490


>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
          Length = 591

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 196/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 22  SVHWFRKGLRLHDNPSLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 80

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
            SL +        +        +       +  VT+L +    E     RD  +++   +
Sbjct: 81  TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I++   Q   +     +A+I  +       + V + ++    
Sbjct: 137 AGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESCR 196

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++            ++  GE  AL  L K  + K +    +R   
Sbjct: 197 AEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 256

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +         S   +L+WREF+  
Sbjct: 257 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 315

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 316 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 374

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A F  + DL V W  G   F   LLD D + N G W W + +      +F  + P 
Sbjct: 375 RHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 433

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      +  + ++YP P+V+H + 
Sbjct: 434 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAET 493

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 494 SRLNIERMKQIYQQ 507


>gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 534

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 212/449 (47%), Gaps = 16/449 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R DLR  DN AL  A    D  V  VF+       +     R+  FI  S+  
Sbjct: 6   STGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQESVTA 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
           ++ SL            +  D +   +     Q +   +F  R YE   V RD  + ++ 
Sbjct: 65  LESSLQALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAVQQQL 124

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVP 180
           L          D V+     +L    + Y V+TP+ +A +              R   V 
Sbjct: 125 LAEGKQLVLVKDQVIFEDREVLTQTGKPYGVFTPYHRAWLARIGSELVPGHDVCRGHAVL 184

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A        P        +    +  +   G   A   + +    ++  Y E R+ P+++
Sbjct: 185 AAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFLGRMDRYSEARNFPSVK 244

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S L  +L  G +S R+  N   +           GA  WL EL WR+FY  ++A +P 
Sbjct: 245 GPSYLGVHLRFGTVSIRKLVNLALKRVRTGSE----GASVWLAELAWRDFYFQILANFPH 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V   + F P  + I W +        +AW +G TG+PI+DAAM QLN  G+MHNRLRM+ 
Sbjct: 301 VAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAMAQLNQTGYMHNRLRMVA 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK L +DWR GE+YF  +L D DL++NNGGWQW AS+G D+ PYFRIFNP  Q ++
Sbjct: 360 GSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGCDAQPYFRIFNPVTQSEK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           FD QG FI+ +LP+L ++  + IHAP   
Sbjct: 420 FDGQGKFIKRYLPQLADLSDKAIHAPWLA 448


>gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
 gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 183/502 (36%), Positives = 257/502 (51%), Gaps = 41/502 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAK---------------------VIAVFIATP 45
           M+  LVWLRNDLR+TD+ ALY A     A+                     V  V   TP
Sbjct: 1   MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60

Query: 46  EQWRQHGISARQSHFIYASLL-----QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
           EQW  H  SA +      SL       + K   QKGI+      + F +    L   C  
Sbjct: 61  EQWCAHSESAAK-----QSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQS 115

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
            +   +++  +   +E +RD  +E+ L    +        L+    +LN+    +KV+TP
Sbjct: 116 LKCESIWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTP 175

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQN 214
           + +  I+ L      S P    +  G     N     +   +        D ++P    +
Sbjct: 176 YYRRWIEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAH 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
               L  FC  K   Y   R+IP+  GTS LSPYL++G + PR+      +    +  + 
Sbjct: 236 IKETLDSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELL-SALKNGYQIREEG 294

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
                 WL EL WR+FY+ LM  +P + M + F P TE+I W+K+    QAW  G TGFP
Sbjct: 295 YWADSIWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFP 354

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMRQLN  GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW
Sbjct: 355 IVDAAMRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQW 414

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           +ASTG D+VPYFR+FNPT Q + +D  G FIR ++PEL+ +  + IH+P      +    
Sbjct: 415 SASTGCDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSP---SVSHRQQC 471

Query: 455 NYPLPIVDHKKACHHTLNQYYA 476
            YP PI+D+K A  H ++ +  
Sbjct: 472 RYPEPIIDYKSARKHAIDAFAE 493


>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
 gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 192/498 (38%), Gaps = 37/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60
            ++W R  LRI DN AL  A   SD  V  VF+  P                    +  F
Sbjct: 8   SIIWFRKGLRIHDNPALEYASKGSDF-VYPVFVIDPHYMEPDPKAFSPGSRLAGLNRIRF 66

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +  SL + G      +     +  + L     +  V KL +    + +    D
Sbjct: 67  LLESLVDLDTSLKKLGSRLLILR----GEPGQVLTRCLKEWGVKKLCFEYDTDPHYQALD 122

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---- 175
             +++      I      S     P  I+        +       L      A       
Sbjct: 123 IRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPSWASSPLLTS 182

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKV 227
              +P +   G    S +P   D  +  I+  +            +    I  K      
Sbjct: 183 ISSLPPVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLKESISDKEWVANF 242

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                         T+ LSPYL  G LS R  +  L++ + ++         S   +L+W
Sbjct: 243 EKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQKHTSPPV-SLAGQLLW 301

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F+  +    P+    +      ++I WN D  LL AW++  TG+P IDA M QL   G
Sbjct: 302 RDFFYTVAFGTPNFDRME-GNKLCKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           WMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +      Y 
Sbjct: 361 WMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YN 419

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           RI++P   GK++DP G +IRH+LP L ++P +YI+ P +         K  +  +YP P+
Sbjct: 420 RIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCIIGRDYPKPV 479

Query: 461 VDHKKACHHTLNQYYAAK 478
           V H  A      +   A 
Sbjct: 480 VYHDSASKECKRKLAEAY 497


>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
 gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
          Length = 479

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 161/478 (33%), Positives = 225/478 (47%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR +DN  L  A      KV+ VF   P    Q  I+  +  ++   L  ++ 
Sbjct: 6   LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G           D+ +  + +         +F+N   E     RD+ +   L+ R
Sbjct: 65  LYLQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 120

Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I     +       P +IL+     Y VYTPF K          +  L           
Sbjct: 121 GIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTAREE 180

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +        P           + +   GE  A   L  F    +  Y E+R+ PAI G
Sbjct: 181 EIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  GV+  R  W + +E       +   +G  +W  EL WREFY+H M  +P 
Sbjct: 241 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W+ +    Q+W +G TG+PI+DAAMRQLN  GWMHNR RMI ASF
Sbjct: 301 LAEG-AYRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP+ Q ++FD 
Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDG 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IRHW+ EL +V T+Y+    +        L YP PIVDHKK        Y   K
Sbjct: 419 DGEYIRHWVGELASVDTEYLIG-GNITPLERQGLGYPPPIVDHKKQQALFKQLYQQQK 475


>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
          Length = 618

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W+R  LR+ DN+AL      +D     V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWVRQGLRLPDNRALREVIQGADTA-RCVYILDPSFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +   TP +          +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 SKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HTEASRLNIERMKQIYQQ 490


>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 483

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/485 (25%), Positives = 202/485 (41%), Gaps = 33/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62
           S  LVW+RNDLR+ D+  L  A  + D +VI V+   P  +         +S+ ++ F+ 
Sbjct: 3   STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++ S+   G               + L     Q    ++   ++    E   +  
Sbjct: 62  ESVQDLRDSVQDLGADLVVR----GGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETA 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVP 180
           +E  L+       F     L     +         KVYT FRKA+ +          P  
Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYYV 231
            + L   + P +IP   +  F     +   G           +       +  + +  Y 
Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237

Query: 232 EQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+       +++ S +L+ G ++PRQ    ++      +       +    ELIWR+F
Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNK--STYWMKFELIWRDF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + ++             I   +  +W       + W  G TG P +DA MR+LN  G+M 
Sbjct: 296 FSYVTWKAGERLFRPGGINGNDI-DWRYYDKSFERWAAGTTGIPFVDANMRELNRTGYMS 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W + +  GND  P  R FN
Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q KR+D  G ++R+WLPEL +VP +Y+H P+    +        L  +YP P+VD  
Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQKKYGCVLGADYPKPVVDLD 472

Query: 465 KACHH 469
           K    
Sbjct: 473 KTYQR 477


>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
 gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
          Length = 484

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 224/477 (46%), Gaps = 19/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA     A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183
            I      D +L  P  IL+ +   Y VY PF K          + +           + 
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  S +P      F          GE  A+  L++FC   +  Y  QR+ PA  GT
Sbjct: 181 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS+
Sbjct: 241 SGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR  MI ASFL
Sbjct: 301 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD  
Sbjct: 360 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            T+I+ WLPEL +V  + +    S          YP PIV+H          Y   K
Sbjct: 419 ATYIKRWLPELRHVHPKDL---ISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLK 472


>gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 467

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 237/476 (49%), Gaps = 28/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAVTAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +SF +++L  P ++ N   Q +++++ + +A+ + +    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                  +      GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLAELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            G +IR W+ EL +V T +IH P     +     NYPLPI+ H++     L  +  
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRDRALRAWKE 465


>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
 gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
          Length = 486

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/488 (24%), Positives = 214/488 (43%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ LY      D  VI  +     Q++            +  F+  S+
Sbjct: 7   LIWYRNDLRIHDHEPLYQGIKEGDL-VIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +        + +     +  +  ++++ +    E + +K +++
Sbjct: 66  ANLRQSLQDLGSDLIVRK----GYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQ 121

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   +               +     Q+ +V+T FRK + +N         P   + L
Sbjct: 122 ALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSL 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRD- 235
              V   NIP   +   +  D                        + +  +  Y E R+ 
Sbjct: 182 PD-VEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYKETRNG 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  +  +++   + +       +  + EL+WR+++R + 
Sbjct: 241 MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERVKNN--STYWLIFELLWRDYFRFIC 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    K  +   +   W +D      W++G TG+P++DA MR++   G+M NR R 
Sbjct: 299 AKHGNKIFYKSGLQGLDI-PWKEDQDRFILWQEGKTGYPLVDANMREIAATGFMSNRGRQ 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +D +G ++RHWLPEL  +P   IH P              + ++YP P+VD  K+   
Sbjct: 417 KDYDSKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPKPVVDFFKSVKA 476

Query: 470 TLNQYYAA 477
               Y +A
Sbjct: 477 NEKVYNSA 484


>gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 190/497 (38%), Gaps = 34/497 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60
            L+W R  LRI DN AL  A   S+  V  VF+  P                    +  F
Sbjct: 7   SLMWFRKGLRIHDNPALQHAAKESN-CVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 65

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFY------- 108
           +  SL+ +  SL Q G      +    +  I  L        C +      +        
Sbjct: 66  LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKVK 125

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N            +         I +       L   S L  A Q     +P    L   
Sbjct: 126 NYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTTLSWL 185

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
               D+ +  +  +     +    I +    PF+  +      ++    I  K       
Sbjct: 186 PPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESE--ALKRLRESIRDKEWVANFE 243

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                        T+ LSPYL  G LS R  +  L + + ++     S   S + +L+WR
Sbjct: 244 KPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMK-WHTSPPVSLVGQLLWR 302

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F+  +    P+    K      ++I WN D  LL AW++  TG+P IDA M QL   GW
Sbjct: 303 DFFYTVGFGTPNFDRMK-GNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGW 361

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           MH+  R   A FL + DL V W  G + F   L+D D A NNG W W + +      Y R
Sbjct: 362 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YNR 420

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           I++P   GK++DP G +IRH+LP L ++P +YI+ P +         K  +  +YP P+V
Sbjct: 421 IYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVV 480

Query: 462 DHKKACHHTLNQYYAAK 478
            H  A      +   A 
Sbjct: 481 CHDSAIKECKRKLAEAY 497


>gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
 gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
          Length = 587

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 158/515 (30%), Positives = 247/515 (47%), Gaps = 52/515 (10%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  D+RI DN+AL  A   +      ++A+++ +P+ +  H   AR+  F+  +L 
Sbjct: 72  VYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLR 131

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125
            ++  L +  I       +        + S        KL+ N +YE++E  R  ++ E 
Sbjct: 132 IIKIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAHKLYANIEYEVDELRRDIQVCEI 191

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +  +      D  ++ PG  +      Y VY+PF++  +  L  +  R L        
Sbjct: 192 AKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPAA 251

Query: 186 GPVTPSNIPRF-----------------FDYPFQAIDPMFPIG----------------- 211
              +     +                   +   + +   +P G                 
Sbjct: 252 NSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKSR 311

Query: 212 -------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                     +          +++ Y ++RD      TS++SPYL+ GV+S R+C     
Sbjct: 312 PEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRSTM 371

Query: 265 EEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSH 321
           +      +     +G   W+ EL WR+FY  ++  +P V MG+PFI    + +    D  
Sbjct: 372 KLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDIS 431

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            ++AWK+G TG+PI+DA MR +   GW+HNRLRM TA FLVKDL+VDWR+GE Y+M  L+
Sbjct: 432 EVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNLI 491

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           DGDLASNNGGWQW+ASTG D  PYFRIFNP +Q ++ DP+G FIR +LPEL ++  + IH
Sbjct: 492 DGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEIH 551

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            P          L YPLPIV H +A    + ++ A
Sbjct: 552 NP---PANVAKRLGYPLPIVKHSEAKDRAIRRFKA 583


>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
 gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
          Length = 434

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 202/472 (42%), Gaps = 45/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   Y A   S+  V+ +FI   +   +      + +FIY +L  
Sbjct: 4   AVNIFWFRRDLRLDDNVGFYNALK-SEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62

Query: 68  VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L  + G            +     +    +  +  +F NR YE     RD  ++  
Sbjct: 63  MRAILEKKHGSSIAMLH----GNPSAIFEKLISEYSIHTVFTNRDYEPYATERDNKIQAL 118

Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I         +     ++      YKVYTPF K   +     +L      +    
Sbjct: 119 LSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSFLEN 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                             +                    + +  Y E R+ PA+  TS+L
Sbjct: 179 LIQNTELPNLHLSDIGFEVAKQK--------IKKHTVTPKLIQTYEETRNFPALDSTSRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +   E  +           +  ELIWREF+  ++  +P      
Sbjct: 231 GPHLRFGTVSVRKMMEKAISEKNE----------IFWQELIWREFFMQILWHFPYTSK-N 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++IEW  +      W QG TG+P++DA MRQLN  G+MHNR+RM+  SFL K L
Sbjct: 280 SFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD    +I
Sbjct: 340 LIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKDLAYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+P    +                    Y   +VDHK+A    L+ Y  A
Sbjct: 400 KKWVPNFQEL-------------------TYAKEMVDHKEARERCLSTYKEA 432


>gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 465

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 174/472 (36%), Positives = 254/472 (53%), Gaps = 17/472 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             LVW RNDLR++D++AL+ A          V A+F  +  QWR HG    +    +++L
Sbjct: 2   TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L++ GI       S + +  E + +YC   ++T + Y+ +   NE+RRD  + +
Sbjct: 62  QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +L   V    + D   + P   L    Q+YKV+T ++K+L++      +  L     R  
Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFS---IDHLATFPPRKA 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           GP    +     D P        P+ E  AL  L     E+V  Y ++RD PA  GTSQL
Sbjct: 179 GPALKVSPLAMKDLPNWQNPLQLPVTEDQALTRLD-AFCEEVRDYADRRDFPADNGTSQL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++G  S RQ  + L    + L         ++ +E+IWR+FY++L+   P +C+G+
Sbjct: 238 SAALALGCTSSRQVAHTLHRHHISLAS------DTFFSEIIWRDFYKYLLFHTPRLCLGE 291

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P+    +   W K+   L+ W++G TG PI+DAAMRQL   GWMHNRLRM+T  +LVK L
Sbjct: 292 PYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYLVKIL 351

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR GE +F   L D D A+NNGGWQW ASTG D+VPYFRIFNP  Q KRFDP G FI
Sbjct: 352 QQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPNGQFI 411

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             ++ ELN+V    +H     L  +     YP P+ D+ KA   TL+++ A 
Sbjct: 412 LTFVTELNDVKPALLHDHKRALSVSS----YPKPLTDYSKARQDTLDKFKAL 459


>gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 528

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 179/490 (36%), Gaps = 34/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLRI D+ AL+ AC     +V+ +F      W     + +   F+   L+ +++
Sbjct: 7   IVWFKRDLRIQDHAALFEACEL--GQVLPIFTWDSSVWNGGDYATQHQMFVEECLVSLRR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G+             IE L+   +  R+  L  + +   N   +           
Sbjct: 65  NLQTIGLSLL----EVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDK----AVAS 116

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                  +    P   ++            + K +    +    ++       L   + P
Sbjct: 117 WCKAQNVNWHEYPHNGVVRRLKNRDIWTAVWEKRMSAQTMPLPTQAKMA---TLPLDILP 173

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPY 248
           +N      Y           G + A  +L  F   +   Y      P    +  S+LSPY
Sbjct: 174 NNDVSHLRYTQADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAGSRLSPY 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVLS R+    L+++   +   P +     L  L   E   H    +      +P I
Sbjct: 234 LAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKLESEPAI 293

Query: 309 PWTEKIEWNKDSHLL-----------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +                         AWK G TG+P++DA M  L   GW++ R+R + 
Sbjct: 294 EYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINFRMRAML 353

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            S     L + WR    +   + LD +   +    Q    +G   +   RI+NP  Q K 
Sbjct: 354 MSTASYLLWLHWRETGLHLAREFLDYEPGIHWS--QVQMQSGTTGINTLRIYNPVKQAKD 411

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471
            DP+G F+R WLP L NVP  +I  P    +         + ++YP P+V+  +A     
Sbjct: 412 QDPEGIFVRRWLPALRNVPNTWIFQPWLMPESLQLEYGCRIGIDYPAPLVNIDQAFKLAK 471

Query: 472 NQYYAAKKQS 481
            ++   +  S
Sbjct: 472 TKFSQLRMNS 481


>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 214/472 (45%), Gaps = 23/472 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR+ D      A   +   VI VFI  PE+  Q         +   SL+ 
Sbjct: 6   KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q++L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L
Sbjct: 65  LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183
               +     +  +   P  +L+   Q Y  +  F  ++    V           +PA+ 
Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181

Query: 184 LTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P        +F  P        +   +  G   A+  L  F  E++  +   R    
Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              TS+LSP++ IG +S R  +    + + E++            +L ++ +RE+ R+L 
Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R+
Sbjct: 302 FHFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + 
Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +RFDP G ++R WLP L+ +PT+YIHAP             +L  NYPLPI+
Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472


>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 214/472 (45%), Gaps = 23/472 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR+ D      A   +   VI VFI  PE+  Q         +   SL+ 
Sbjct: 6   KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q++L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L
Sbjct: 65  LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183
               +     +  +   P  +L+   Q Y  +  F  ++    V           +PA+ 
Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181

Query: 184 LTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P        +F  P        +   +  G   A+  L  F  E++  +   R    
Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              TS+LSP++ IG +S R  +    + + E++            +L ++ +RE+ R+L 
Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R+
Sbjct: 302 FHFP-FIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + 
Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +RFDP G ++R WLP L+ +PT+YIHAP             +L  NYPLPI+
Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472


>gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
           defective 3
 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 556

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 127/503 (25%), Positives = 194/503 (38%), Gaps = 33/503 (6%)

Query: 5   TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52
           T+M+     L+W R  LR+ DN AL  A   S+     VF+  P                
Sbjct: 18  TSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSR 76

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLF 107
               +  F+  SL  +  SL + G      +    +  +  L        C +      +
Sbjct: 77  AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYY 136

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
                ++ +      +E          +    +    G          KV      A  +
Sbjct: 137 QALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSE 196

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
            ++             L     PS     +    QA    F  GE  AL  L K   +K 
Sbjct: 197 LVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA 256

Query: 228 YYYVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +    ++            T+ +SPYL  G LS R  +  L+  + D+         S L
Sbjct: 257 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLL 315

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA M Q
Sbjct: 316 GQLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQ 374

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +   
Sbjct: 375 LLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFF 434

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
              + RI++P   GK++DP G +IRH+LP L ++P QYI+ P +            +  +
Sbjct: 435 YQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKD 493

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YP P+V H  A      +   A 
Sbjct: 494 YPKPMVLHDSASKECKRKMGEAY 516


>gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 215/490 (43%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +      ++  L         T++ + +    I+ VR DK+  + L  
Sbjct: 66  SLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELLGL 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +     +  +  + +  ++  +       P   + ++G   
Sbjct: 123 GISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGIEN 182

Query: 190 PS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                         +  +     +   +  G +NA   L  F    +  Y + R   A  
Sbjct: 183 ICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVAGT 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLMA 296
            TS  SPYL  G +S R+ +  ++ + +    + KSGA    N     +  RE+ R+L  
Sbjct: 243 TTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYLCF 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I
Sbjct: 303 NFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +QG+
Sbjct: 362 VSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQ 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468
           ++DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A    
Sbjct: 422 KYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECL 481

Query: 469 -HTLNQYYAA 477
              ++  +  
Sbjct: 482 DDAISTMWQL 491


>gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca]
 gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 490

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/487 (24%), Positives = 222/487 (45%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           ++W RNDLR+ D++ L  A  ++  ++I ++   P Q+             +  F+  S+
Sbjct: 9   ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +  + G            +    +     Q  +  ++Y+++    E+  +  LEK
Sbjct: 68  ADLRHNFQKIGSNLLVR----IGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEK 123

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPV 179
            L    +  KSF  + L     +     ++ +++T FRK + Q            +    
Sbjct: 124 ALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQF 183

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-I 236
           P I      T + +        +     F  GE    +      + ++ +  Y + R+ +
Sbjct: 184 PDIEPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNGM 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G LSPR  + ++++     +       +  + EL+WR+++R +  
Sbjct: 244 LGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRVKND--STYWLVFELLWRDYFRFICL 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +      K  +   +   W ++    Q W QG TGFP++DA MR+L   G+M NR R  
Sbjct: 302 KHGPKVFYKSGLQGVKI-PWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNRGRQN 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN   Q +
Sbjct: 361 VASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQSQ 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHT 470
            +DP G +++HWLPEL ++P   +H+P    ++  +       ++YP P+VD +++    
Sbjct: 420 DYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQESVEAN 479

Query: 471 LNQYYAA 477
              Y  A
Sbjct: 480 RRIYEKA 486


>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
 gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
          Length = 514

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/499 (23%), Positives = 194/499 (38%), Gaps = 32/499 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH-NSDAKVI-AVFIATPEQWRQHGISARQSHFIYAS 64
           M   + W R  LR+ DN +L  A        V   V++  P       +   +  F+   
Sbjct: 1   MKSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWRFLLQC 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL +        +        +       + +V+ L +    E     RD  + 
Sbjct: 61  LEDLDASLRKLNSRLYVIR----GQPTDVFPRLFKEWKVSCLSFEEDSEPFGRERDMAVM 116

Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           K  +   +      S        I++       +     +A++  +   D     + A  
Sbjct: 117 KLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSITAST 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVE 232
           +    TP        +   +++            ++P GE  AL  L +  + K +    
Sbjct: 177 VDNLTTPIRDDHDEKFGVPSLEELGFDTDNLNPVVWPGGETEALTRLERHLERKAWVASF 236

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +R            + LSPYL  G LSPR  + +L E +  +         S   +L+WR
Sbjct: 237 ERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLTELYKKVKRSNHPPL-SLYGQLLWR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF+       P+            +I W+K+   L  W +G TGFP IDA M QL   GW
Sbjct: 296 EFFYTAATNNPNFDKM-VNNTICVQIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGW 354

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F 
Sbjct: 355 IHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFH 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461
           ++ P   G+R DP G FIR +LP+L   P +YI+ P +  +      K  +  +YPLP+V
Sbjct: 414 VYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMV 473

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           +H +     + +     +Q
Sbjct: 474 NHAETSRINVERMKQVYQQ 492


>gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
 gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
          Length = 468

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 181/475 (38%), Positives = 261/475 (54%), Gaps = 16/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + LVW RNDLR  D+ ALY AC  N+   V+ V I TP QW+    S  +  F  A+L  
Sbjct: 1   MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L    I     +  +  +    L     + +V+ +++NR+Y + E +RD  +   +
Sbjct: 61  LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               + C SFD  V+LP G++LN     +KV+TPF K   Q  + ++ + LPVP ++   
Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180

Query: 187 PVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++  ++P+   YP           +P G + A  +L+ +  EKV  Y + RD PA  GT
Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYLS+GVLS RQC   ++  F      P+     W+ ELIWREFYRHL+  +P + 
Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYFDQ----PEWFDSQWVTELIWREFYRHLLVLFPEMN 296

Query: 303 MGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             +PF P  E+    +      QAW +G TGF I+DA M++L   GWMHNR+RMITASFL
Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L  DWR+G  +FM  L+DGD ASN GGWQW+AS G D+ PYFRIFNP  Q +RFD +
Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G ++  ++P L  + +   H P      +      P PI+D+     ++L+ Y A
Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMFAASYSR-----PTPIIDYAYERQYSLDAYKA 466


>gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
 gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
          Length = 382

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 203/384 (52%), Positives = 268/384 (69%), Gaps = 3/384 (0%)

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           C + R+T LFYN QYE+NE  RD   E+ L++  +C+ FDDSV+LPPG+++    +MYKV
Sbjct: 2   CAENRITHLFYNYQYEVNERARDVQAERTLRNV-VCEGFDDSVILPPGAVMTGNHEMYKV 60

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +TPF+ A ++ L +     +  P +R +G + P+                FP+ E+ A+ 
Sbjct: 61  FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEEKAAIA 120

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E   +L      
Sbjct: 121 QLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS 180

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
              WLNELIWREFYRHLM +YPS+C  +PFI WT++++W  +   L+AW++G TG+PI+D
Sbjct: 181 V--WLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVD 238

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS
Sbjct: 239 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 298

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           TG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L+YP
Sbjct: 299 TGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYP 358

Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481
            PIVDHK+A   TL  Y  A+K +
Sbjct: 359 QPIVDHKEARLRTLAAYEEARKGA 382


>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 442

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 207/473 (43%), Gaps = 33/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL 
Sbjct: 1   MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L  + +V               +         + +  +  +     RRD  +   
Sbjct: 56  VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G +       Y+V+TPF +       +   ++    A  L  
Sbjct: 109 LASVPLVATGSPYLVAP-GRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDP 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                        P          GE  A +  + F    +  Y + R  P I+GTS++S
Sbjct: 168 ARLGITACEI---PDPGATLDLAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            ++  G + PR     L            +GA ++L EL +R+FY  ++   P+      
Sbjct: 225 AHVKFGTIHPRTLVADL--------DLRAAGARTYLRELAFRDFYADVLHHRPASAWRNW 276

Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       ++     +AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKD
Sbjct: 277 NSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +
Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL      ++          +    Y  PIVDH       L +Y + 
Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYLAPIVDHATERAEALRRYRSM 442


>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
          Length = 623

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   +   V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  +T+L Y    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   +  +  + A  +
Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS +  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTTATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP P+V 
Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKCIIGVHYPKPMVH 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 656

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 124/489 (25%), Positives = 213/489 (43%), Gaps = 27/489 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + K
Sbjct: 8   VVWFRKDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLAK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +     D++  L      +    ++ +    I+ VR DK+  + L   
Sbjct: 66  SLEALGCPLVLIRAQTTLDAL--LQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLGLG 123

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  +SF+  +L  P  I +     +  +  + +  ++  ++      P   + ++G    
Sbjct: 124 ISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIENL 183

Query: 191 S---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                        +  +     +   +  G +NA   L  F    +  Y +     A   
Sbjct: 184 CTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAGTT 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           TS LSPYL  G +S R+ +  ++ +      +   +       +L  +  RE+ R+L   
Sbjct: 244 TSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLCFN 303

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I 
Sbjct: 304 FP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIV 362

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG++
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQK 422

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH--- 468
           +DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A     
Sbjct: 423 YDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLD 482

Query: 469 HTLNQYYAA 477
             ++  +  
Sbjct: 483 DAISTMWQL 491


>gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
 gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
          Length = 434

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 205/470 (43%), Gaps = 43/470 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++WLR DLR+ D   L AA   ++ +V+  F+  P   +      R+  F++ SL ++ 
Sbjct: 6   SILWLRRDLRLGDLPPLSAAA--ANGRVLVCFVVDPRLEKSS--GERRLAFLFDSLRELD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G                 +           +  +  +     RRD  + + L  
Sbjct: 62  TKL---GGRLLV----VSGRPDVEIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEALGE 114

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +       ++ P G I       YKV+TP+ +    +  +    +       L     
Sbjct: 115 IPLESVGSPYLVSP-GRITKSDGDPYKVFTPYFRQWCDHGWRKPASTAAEDLNAL--DPG 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                     P   +    P GE+ A     +F  + +  Y   R+ P +  +S++S YL
Sbjct: 172 DIRRSGRIRIPAAPVKLDLPAGEEAARERWSEFVVDDLDDYESGRNRPDLDVSSRMSAYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G + PR     L              A ++L EL +R+FY  ++  +P          
Sbjct: 232 KFGNIHPRTMAADL--------DFRNPSAAAYLRELAFRDFYADVLYHWPESAWHNWNRG 283

Query: 310 WTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           + +       +      AW+ G TGFPI+DA MRQL  IG+MHNR+RMITASFLVKDL +
Sbjct: 284 FDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNRVRMITASFLVKDLHL 343

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +F+ QL+DGD+ASN  GWQWAA TG D+ PYFR+FNPT Q  +FDP G +IR 
Sbjct: 344 PWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPTTQADKFDPDGEYIRR 403

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PE                     + +YP PIVDHK      L +Y A 
Sbjct: 404 WIPEYG-------------------TDDYPQPIVDHKAEREEALRRYRAL 434


>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
 gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
          Length = 436

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 205/472 (43%), Gaps = 43/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN  LY A    D  V+ +FI   E          +  FI+  L  
Sbjct: 4   KISIFWFRRDLRLEDNVGLYQALK-GDYPVLPIFIFDKEILENLPKDDARVSFIFEQLES 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L +     +           E   S      V  ++ N  YE     RD  ++  L
Sbjct: 63  MRNTLQE---EVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDYL 119

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S+ D V+   G +L      Y VYTP++                        
Sbjct: 120 KDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFDAKKDLETYNTKKYFKN 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQL 245
            +  S +P               +              + +  Y + R+ P    GTS+L
Sbjct: 180 FIAHSRLPNLSLSDMGFETSKIKV-------PNYSAGSKVIQNYEDTRNYPAIENGTSRL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   R   E  ++          + +ELIWREF+  ++  +P      
Sbjct: 233 GPHLRFGSVSIREITKRAIAEKNEV----------FWSELIWREFFMQILWHFPHTTK-N 281

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+RM+ ASFL K L
Sbjct: 282 AFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVASFLCKHL 341

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  +FD Q  +I
Sbjct: 342 LIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYI 401

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             W+ +L  +                    YP  +VDHK A    L  Y  A
Sbjct: 402 NTWVSDLQELS-------------------YPDKMVDHKMARERCLKTYKEA 434


>gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 517

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 166/467 (35%), Gaps = 28/467 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LV  + DLR+ DN AL  A     A  + VF+A PE W Q   SARQ  F+  SL 
Sbjct: 1   MKNVLVLFKRDLRVQDNPALALAASRDGAA-LPVFVAEPEAWAQPDASARQWRFVAESLE 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+  G      +     D +  L   C    V ++    +               
Sbjct: 60  GLRADLAALGAPLIVRR----GDMMAVLGGLCATHDVGEIISIEETGNLWSYGRDRRLAA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LT 185
                              + +       ++      A  +  V    +      +R ++
Sbjct: 116 ----------WARGAGVIWTEVPQLGVQRRLVNRDGWARDRQAVMRQAQVPVPEGLRGVS 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243
                    R     F         G    L  L  F   +   Y      P       S
Sbjct: 166 EEPGSIPDARDLALAFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           +LSP+L+ G LS R+  + +     ++            S+   + WR+ +   +   P+
Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEVKGTRDGWLGSLRSFEARVAWRDHFMQKLEDQPA 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + +      + +      D+  L AW++G TG P +DA MR L   GW++ R+R + A+ 
Sbjct: 286 MEIRCLHSAYEDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFRMRAMLAAV 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +DWR    +      D +   +    Q     G   +   RI+NP  QG   DP
Sbjct: 346 ASYHLWLDWRRTGPHLARMFTDYEPGIHWP--QMQMQAGTTGMNTIRIYNPVKQGLDHDP 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVD 462
            GTF R W PEL  VP   +  P +W          L   YP PIVD
Sbjct: 404 TGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIVD 450


>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
 gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
          Length = 477

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 30/474 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR DLR  D+ AL+A        V+ VF+                 +++ SL    
Sbjct: 8   ALLWLRQDLRTADHPALHAVA---GQPVLPVFVLDES--DPWAPGGAARWWLHHSL---- 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K+L +K              + + +          ++  +R YE    +RD  + K L+ 
Sbjct: 59  KALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEG 118

Query: 130 RVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +           L  P  +     + Y VYTPF +A++           P        P 
Sbjct: 119 QGRRLCLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLALGDPPPPIPAPDRLRAAPPPR 178

Query: 189 TPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               +      P              +  GE  A   LR F  +    Y   RD+P    
Sbjct: 179 EGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGEDR 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T++LSP+L  G +SPRQ W  + E           G  +WL E++WREF  H +   P +
Sbjct: 239 TARLSPHLHWGEVSPRQAWQAVAE------GGKSGGHITWLKEILWREFAYHTLWHRPEL 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               P  P   +  W  D  LLQAW++G TG+PI+DA +RQL   GWMHNR+RM+  S L
Sbjct: 293 PD-TPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGSLL 351

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL  W+ G  +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++FDP+
Sbjct: 352 VKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFDPE 411

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
           G ++RH++PEL  +P  ++H P              L  +YP PIVDH+     
Sbjct: 412 GRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRKR 465


>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
          Length = 523

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 204/495 (41%), Gaps = 33/495 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL AA  +   ++  VF+  P       I   +  F+  +L  +  
Sbjct: 6   IHWFRKGLRLHDNPALVAALRDCK-EIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDC 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +      + E       + +VT+L Y    E   +RRDK + +  +  
Sbjct: 65  SLRKLNSRLFVVR----GKTDEVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEH 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +   +  S  L     +          T  R   + + +    R +P P       V  
Sbjct: 121 GVEIIYKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKDVKT 180

Query: 191 SNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               +                P    + +FP GEQ AL  L +    K +    ++   +
Sbjct: 181 PCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKPQTS 240

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  T+ LSPY++ G LS R  W  L + +            S   +L+WREF+   
Sbjct: 241 PNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGKK--HSQPPVSLHGQLLWREFFYTA 298

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +++W+ +   L AW +  TGFP IDA M QL   GW+H+  R
Sbjct: 299 GLGIPNFDKME-GNPVCTQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIHHLAR 357

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G++ F   LLDGD + N G WQW +++      +FR+++P  
Sbjct: 358 HAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQWLSAS-TFFHQFFRVYSPIA 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            GK+ D  G +I+ +LP L   P QYI+ P              +  +YP PIV+H+   
Sbjct: 417 FGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVEHEVIS 476

Query: 468 HHTLNQYYAAK-KQS 481
              + +  AA  K+S
Sbjct: 477 KKNIQRMKAAYAKRS 491


>gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 488

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 174/481 (36%), Gaps = 22/481 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWL+ DLR+ D+ AL AA   S   V+ ++   PE  +      R   F++ SL  + 
Sbjct: 3   AVVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMH 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L       +        D  E       ++++  ++   +  + +          L  
Sbjct: 62  RRLEAHPRSLRVLH----GDPREIFRVLADEEQLHSVYSYEETGLEKTFARDRELAALFQ 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                  +           N      K              +    S           + 
Sbjct: 118 ERSIPWKEFPSNGVQRGRKNRKGWNRKWTAQMSAPCHDVDHRLIRGSFACEERLAAFHLR 177

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
                          +     GE  A   L  F + +   Y      P  +    S+LSP
Sbjct: 178 DLPGS-----WRSPDNQFQSGGESEAWQTLNDFLERRSPAYARNISKPLASRSSCSRLSP 232

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L+ G LS RQ +  L+    +          ++ + L W   +         +   +  
Sbjct: 233 FLAWGNLSIRQVYQALRAAQKERGSSR--ALQAFESRLHWHCHFIQKFEMECRMEH-EDI 289

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                    ++D  L +AW +G TG+P+IDA+MR L   G+++ R R +  SFL   L  
Sbjct: 290 NRGYLHHPRSRDDALARAWAEGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHHLWQ 349

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+G  +  S  LD +   +    Q  A  G   +   RI+NP  Q +  DP G FIR 
Sbjct: 350 DWRVGAAHLASLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEEHDPDGAFIRQ 407

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+PEL  VPT  IH P        L     S  Y  P+VD ++      ++ +A K   +
Sbjct: 408 WVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPVVDVRETYRSARDRLWALKDDPV 467

Query: 483 L 483
           +
Sbjct: 468 V 468


>gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
 gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
          Length = 475

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 148/487 (30%), Positives = 229/487 (47%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
              +VWLR +LR+ DNK+  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +            +   ++ +       ++  ++ +  YE N + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLVF----YGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L        + D +L+ P  +L    + YKVYTP+ +A  + +      S        + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177

Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKV----------YYY 230
            +                      + +  IG       L +    +             Y
Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              +D   + GTS +SPYL  G++S R+C+ +      +       G+ +W+NELIWREF
Sbjct: 238 KIDQDFLYLDGTSTISPYLRFGLVSIRECYRKAFNAASN------PGSITWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QGK FDP   +I+ +LP L NV    IH     ++ + +  NYP PIVD+  +    
Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467

Query: 471 LNQYYAA 477
           +  +   
Sbjct: 468 IEVFKGI 474


>gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio]
 gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
 gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  + +L Y    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   +  +  + A  +
Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V 
Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio]
 gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  + +L Y    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   +  +  + A  +
Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V 
Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
 gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
          Length = 493

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 101/483 (20%), Positives = 185/483 (38%), Gaps = 26/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++L+WL+ DLR+TD+ AL  A  +S    + +++  P        S R   F++ SL  
Sbjct: 3   TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+  G            + ++ L +   Q  ++ +F +++  +N   +        
Sbjct: 62  MNAQLADYGQHILVLS----GNVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQV--- 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +            G+++  A         +   +   +   +L++  + ++     
Sbjct: 115 -ANWLQAQGIPWHEFEYGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSNDTL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                 P            M   G   A   L  F + +   Y  +   P+   T+   L
Sbjct: 174 NCSFTPPPS---WTVRTKGMQTGGSSVAWQTLDDFFQRRGRDYYRRISSPSASRTACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L E +   L   +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREVYQYLLEHWQ--LAGFRRSLIALSSRLHWHCHFIQKFESECKMEFRC 288

Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +           +AWK G TG P+IDA MR L+  G+++ R+R +  SFL  
Sbjct: 289 VNQAYEALLRQACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G       RI+NPT Q +  D  G 
Sbjct: 349 HMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDADGK 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VPT  +  P            +  +  Y  PI+D   +      + +A 
Sbjct: 407 FIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDNSAKAARERLWAW 466

Query: 478 KKQ 480
           +K+
Sbjct: 467 RKR 469


>gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
 gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
          Length = 655

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 174/526 (33%), Positives = 256/526 (48%), Gaps = 61/526 (11%)

Query: 11  LVWLR-NDLRITDNKALYAACHN--------SDAKVIAVFIATPEQWRQHGISARQSHFI 61
           + W+R +DLRI DN+AL  A               +IA+F+ TP  +  H   AR+  F+
Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +L  ++    +  I F  +  S  D +   E + S C Q   ++L  N +YE++E+ R
Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244

Query: 120 DKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + +    + +  S   D  ++PPG I  +  + Y V++P+ +   +++ +       
Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304

Query: 179 VPAIRLTGPVT---------------------PSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                                           P  +  F     + +  ++P  +Q A  
Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364

Query: 218 ILRKFC--------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           +L  F                             ++  Y E R++ +  GTS++SPYL+ 
Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424

Query: 252 GVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           GV+S R+C  R K+     L +   SG   W  E+ +R+FY H++A +P VCMG  FI  
Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            E + W  DS  L AWKQG TG+PI+DAA RQ    G++HNR RMI+A FL K LL DWR
Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F    +D D ASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IRH++P
Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475
           EL NV    IH P   L K +     YP PIV+H +A    L +Y 
Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRYK 650


>gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 487

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 190/488 (38%), Gaps = 27/488 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK      ++LVWL+ DLR+TD+  L AA   SD   +  ++  P+       S R   F
Sbjct: 1   MKK-----INLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +   L+          C    D + +L+    Q ++  L+ +++  ++   + 
Sbjct: 55  VWQSLSDINGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQR 110

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                +         ++ +                K +    + +++  ++++  S    
Sbjct: 111 DKQVLKWCKDRQISWYEFANGAVVRGCKER-----KHWDKNWQRVMRAPIESNALSAGAL 165

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              L         P               +    A        + K YY+       + +
Sbjct: 166 LPNLNDDFGIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASRE 225

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G LS R+ +  L   + D     +    ++ + L W   +         
Sbjct: 226 ACSRLSPYLAWGNLSLREVYQFLLSHWNDKG--MRRSLIAFSSRLHWHCHFIQKFESEHQ 283

Query: 301 VCMGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +        +    +     ++  L AWK+G TG+P++DA MR L   G+++ R+R +  
Sbjct: 284 MEFRCVNRGYESLIQHSAKTNNDHLTAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAMLV 343

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL   L  DWR G  +  S  LD +   +    Q+   +G   +   RI+NPT Q    
Sbjct: 344 SFLTHHLAQDWRNGVAHLASLFLDFEPGIHYA--QFQMQSGVTGINTIRIYNPTKQAIDH 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLN 472
           DP G FI+ W+PEL +VP   +  P        L  +      Y  PI+D   A     +
Sbjct: 402 DPDGVFIKKWVPELKDVPISLLFEPWKMSAMEALMYDIEGSSIYLNPIIDLDTAGREARD 461

Query: 473 QYYAAKKQ 480
           + +A KK+
Sbjct: 462 RLWAWKKK 469


>gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
 gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
          Length = 495

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/482 (22%), Positives = 180/482 (37%), Gaps = 20/482 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + LVWL+ DLR+ D+  L  A  N     I  +   P        S R  +FI  SL++
Sbjct: 10  PIALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHWNFIAESLIE 68

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q  LSQ  +           + I++L +   +  +  LF + +  +          K  
Sbjct: 69  MQSKLSQLEMSLIQVHT----EVIDFLKAVQEKFDINYLFSHEETGLKITYERDNAVKFF 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +  +           N        Y    K +I+  +             L G 
Sbjct: 125 CENQNIEWQEFQQFGLQRGRKNRQDWSKSWYEFMSKPIIKIDLNDIKTIH---LNELPGI 181

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +  ++      Y  + I       +           +   Y     +   A +  S+LSP
Sbjct: 182 ILINDSEELNIYKEKGIAQTGGTAQAYKYLNSFLSDRHFGYNKNISKPAEARKSCSRLSP 241

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ G +S R  +  +            +    + + L W   +                
Sbjct: 242 YLAYGNISMRVVFQSMISAKEHGNKSALNN---FGSRLRWHCHFIQKFEMEDRYEFEN-I 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I  N++  L +AW++G TGFP++DA MR +   G+++ R+R +  SFLV  L  
Sbjct: 298 NRGYDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFRMRAMLVSFLVYHLWQ 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+ G  +   Q LD +   +   +Q  A  G   +   R++NP  Q K  DP G FI+ 
Sbjct: 358 PWKRGAMHLGRQFLDFEPGIHYPQFQMQA--GVTGINTIRMYNPVKQSKEHDPNGDFIKK 415

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W+PEL NVP  +IH P             +L  +YP PI+D + A        +  +K  
Sbjct: 416 WVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDAGKKARKVIWEMRKDP 475

Query: 482 LL 483
            +
Sbjct: 476 KV 477


>gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
 gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
          Length = 543

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 174/524 (33%), Positives = 256/524 (48%), Gaps = 62/524 (11%)

Query: 11  LVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  DLR  DN+AL  A   +      +IA+F+ +P  +  H  SAR+  F   +L 
Sbjct: 18  VYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLR 77

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL++  +       +   +   ++ S   +   T+L+ N +YE++E+RRD  + + 
Sbjct: 78  CIRSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCEL 137

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + + + C    D  ++PPG +L    + Y VY+PF +A   +L  +   + P+      
Sbjct: 138 AREKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPLACAPSP 197

Query: 186 GPVTPSNIPRFFDYP--------------------FQAIDPMFPIGEQNALHILRKFCKE 225
              +PS                                I   +P GE  A  IL +F   
Sbjct: 198 AANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFVNT 257

Query: 226 KVY----------------------------YYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
                                           Y + RD      TS+LSPYL+ GV+S R
Sbjct: 258 MARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVISAR 317

Query: 258 QCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYPSVCMGKPFIPW--T 311
           +C     +       K           W+ E+ WR+FY H++A +P V MG+PF     +
Sbjct: 318 ECIRATMQLSASKAPKVDVSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQEKLSS 377

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            K E +     LQAWK G TG PI+DA MRQ   +GWMHNR+RM+ A +LVKDL++DWR+
Sbjct: 378 IKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMIDWRL 437

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE++FM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IR+++PE
Sbjct: 438 GEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRYFVPE 497

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           L NV    IH P   L      L YP P+V H +A    + +Y 
Sbjct: 498 LANVRGADIHNPPPALAD---KLGYPRPLVKHDEARQRAIRRYK 538


>gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 491

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 190/486 (39%), Gaps = 25/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V++VWL+ DLR++D++AL  A  NSD  V+ ++I  P        S R   FI+ SL  
Sbjct: 3   KVNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+               +++E LD       +  LF +++  +       L  K  
Sbjct: 62  INHQLAGVNSQVFIFH----GNAVECLDKLMHHFPINALFSHQEIGLGCTFERDLNIKA- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 K          G+++  A         + + +   L   +L  +   +I     
Sbjct: 117 ---WCDKQQIQWHEFQQGAVIRGAKNRTNWDKHWNRVMRAPLYSVNLDKVNWVSISPDQL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                 P       + +  M   G   AL  L  F   +   Y      P    T+   L
Sbjct: 174 ADMLFSPPKSWC--ERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S RQ + ++   +       +    +  + L W   +       P +    
Sbjct: 232 SPYLAWGNISLRQVYQQVLAHWNVKG--FRRSLIALSSRLHWHCHFIQKFESEPDIEFFC 289

Query: 306 PFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +          L AWK+G TG P+IDA MR L   G+++ R+R +  SFL  
Sbjct: 290 MNRTYDRLLTQYCSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTH 349

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q +  DP G 
Sbjct: 350 HLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEHDPDGK 407

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL NVP   +  P +  +   +      +  Y  PIVD +++      + +  
Sbjct: 408 FIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLSPIVDLERSAKEARERLWGW 467

Query: 478 KKQSLL 483
           + ++ +
Sbjct: 468 RSRADV 473


>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 477

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 164/486 (33%), Positives = 221/486 (45%), Gaps = 24/486 (4%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHF 60
           M     L W R DLR+ DN  L  A   S A V  V++  P               +  F
Sbjct: 1   MPTSRVLFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+++Q+   + G      +     D +  L     Q     + +NR  E    +RD
Sbjct: 60  LIESLVELQQRWREAGSRLLVVE----GDPVAVLPQVAQQISAEAVVWNRDVEPYARKRD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + K LQ        D   LL    +L   A   Y+VY PF +     ++     ++  
Sbjct: 116 RQVAKTLQADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAA 175

Query: 180 P------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P         L     P    R       +       GE  AL  L  FC   +  Y   
Sbjct: 176 PTGLVDLPPELMPAGDPLPALRESHGFQGSEICPCRPGEAAALEQLTTFCNGPLLGYEPD 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292
           R+ P   GTS LS  LS+G LSPRQ W   ++       + +      W  EL WREFY+
Sbjct: 236 RNFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQ 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             + ++P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR
Sbjct: 296 QALFYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D+ P  RIFNP 
Sbjct: 355 CRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPA 413

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q  +FD  G +IR W+PEL +V T+ +    S         +YP P+VDHK        
Sbjct: 414 TQASKFDSAGDYIRRWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKNQQARFKA 470

Query: 473 QYYAAK 478
            Y   +
Sbjct: 471 LYATIR 476


>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 534

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 217/477 (45%), Gaps = 27/477 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RN+LR+ DN  L  A       ++ VF+   E   +      +  +   SL ++ 
Sbjct: 62  SIVWFRNNLRLLDNPPLREAAER--GPLLPVFV--GEHPGKQPPEGARQWWQARSLRRLD 117

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SLS++G    + +     D    L     + +  K+      + +  R    L+  L  
Sbjct: 118 HSLSRRGAPLLFLR----GDPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSG 173

Query: 130 RVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + +      +  L      P G      +                 + A  R   +P  R
Sbjct: 174 KPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 233

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P      P   D+  +      P GE+ A   L  F ++++  Y  +RD      +S
Sbjct: 234 TETPDDWGWEPENPDWATEMRGFWDP-GEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSS 292

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L+ G +S R  W  +KE        P      +L+EL WREF  HLM  +P +  
Sbjct: 293 LLSPHLANGEISIRSVWWAIKESTA-----PDKDREKFLSELGWREFSAHLMWHHPDLAS 347

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +      E   W +D   L AW++G TG P++DA MRQL  +G++ NR+RM+ ASFLVK
Sbjct: 348 ERLHKERPEI-RWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 406

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFNP +QG++FDP+G 
Sbjct: 407 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 466

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK----NDLSLN--YPLPIVDHKKACHHTLNQY 474
           +++ +LPEL+ +  +YIH P +          +     Y  PIVD   +    L  +
Sbjct: 467 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQAW 523


>gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
 gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
          Length = 488

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 208/487 (42%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ ++ A     A++I  +      ++            +S F+  S+
Sbjct: 9   LIWYRNDLRLHDHQPMFQAVKK-KAQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSI 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L Q G      +        + +   C +  +  ++++++    E++ +  LEK
Sbjct: 68  DNLRKNLQQLGSNLVIRR----GYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEK 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +  +      L     L   L          +  ++     +        +   
Sbjct: 124 ALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSL 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---------DI 236
             +   NIP   +   +  +       +          +   Y++ + R          +
Sbjct: 184 PNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNGM 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L++G LSPR  +  + +   +L        +  + EL+WR+++R + A
Sbjct: 244 LGSDYSSKFSPWLALGCLSPRYIYEEVTKY--ELERVKNDSTYWLIFELLWRDYFRFICA 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       +       W +D    Q W+ G TG+P++DA M +L   G+M NR R  
Sbjct: 302 KHGNKVFYSSGLQGFNL-PWKEDWQRFQLWQTGNTGYPLVDANMTELAATGFMSNRGRQN 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 361 VASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G ++RHWLPEL  +P   IH P              L ++YP PIVD  K+    
Sbjct: 420 DYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIVDFFKSIKAN 479

Query: 471 LNQYYAA 477
              Y  A
Sbjct: 480 EAIYNNA 486


>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 474

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 148/482 (30%), Positives = 225/482 (46%), Gaps = 28/482 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR++D+ AL AA   S   VI VFI          + A     +   L  + +
Sbjct: 9   LIWFRQDLRLSDHPALSAAVR-SGRPVIPVFIRDSLV---DDLGAAPKWRLSLGLAALAQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  KG             +++ L +   +    +++++R Y+ + + RD  ++  L   
Sbjct: 65  NLEHKGSKLVLRSGP----ALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTEL 120

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
               KSF   +L  P ++     + ++V+TP  +A+ Q        A  R    P    +
Sbjct: 121 GLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPERLAAPPLWPAS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +      GE  A   L     E++  Y  QRD  A  GTS L
Sbjct: 181 EHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLD-AFMERLDAYPAQRDALADDGTSHL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL++G + PR  W+R+K       +    GA ++L +L+WREF  HLM   P +    
Sbjct: 240 SEYLALGEIGPRTVWHRVK----GAALIGSIGADAFLRQLVWREFAYHLMYHTPHLLTQN 295

Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              P  +   WN+D      +AW    TG P++DA +R++   G MHNR RMI AS+L K
Sbjct: 296 W-RPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNRARMIVASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP G 
Sbjct: 355 HLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQTQAEKFDPTGA 414

Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+ E  + P +   +     P SW    D +  YP P+VD K      L  Y   K
Sbjct: 415 YVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDDA--YPQPVVDLKVGRERALAAYEGRK 472

Query: 479 KQ 480
            Q
Sbjct: 473 NQ 474


>gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 493

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/474 (23%), Positives = 183/474 (38%), Gaps = 32/474 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW + DLR+ D++ L  A       V+ ++I  PE W Q   SARQ  F   SL  +Q
Sbjct: 6   QLVWFKRDLRLVDHQPLARALAR--GPVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++ ++ G            D+++ L+    Q  ++ L+ + +                  
Sbjct: 64  EAFAEVGQPLIIRS----GDAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAA--- 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +       LP   ++            + + + + +  A     P+  I      T
Sbjct: 117 -WARERGIPWHELPQFGVVRRLQTRRGWARRWEERMGEAITPAPTGLTPLSGIAPGDLPT 175

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSP 247
              +                 G +  L  L  F   +V  Y      P    +G S+LS 
Sbjct: 176 NDALALQA----DPCPYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFKGCSRLSA 231

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y++ G LS R+   R +E           G  S+ + L W   +   +   P     + F
Sbjct: 232 YITWGCLSMREVLQRSRE-------FQGRGVSSFSSRLHWHCHFIQKLEDQP-PIEWEDF 283

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P+   I    D     AW +G TG P +DA MR L   GW++ R+R +  SF   +L +
Sbjct: 284 HPFMRGIRSLDD-ARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLWL 342

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DP G FIR 
Sbjct: 343 PWRDTGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGHDHDPDGAFIRR 400

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W PEL +VP  ++H P S L          +PIVD   +      + +  ++ +
Sbjct: 401 WCPELEDVPAVHLHEPWSLLGAPRS-----MPIVDCAISAREAKERIFEIRRSA 449


>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
 gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
          Length = 638

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/500 (23%), Positives = 195/500 (39%), Gaps = 34/500 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ + W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + +V++L +    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSCLFVIR----GQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +  V         L     I+        +     + L+ ++   D          +
Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLASPDRGMM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
              VTP +      Y    ++            ++P GE  AL  + +        + E 
Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTAWQEN 235

Query: 234 RDIPAIQGTSQL------SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            + P +  +  +      SPYL  G LS R  +         +         S  ++++W
Sbjct: 236 FERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVKKNMNPSI-SLYDKILW 294

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P     +   P   +I W++++  L  W +  TGFP IDA M QL   G
Sbjct: 295 REFFYTAATNNPRFDRME-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEG 353

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G + F   LLD D + N G W   + +      +F
Sbjct: 354 WIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQFF 412

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
             + P   G+R DP G FIR +LP L + P +YI+ P +         K  + ++YP P+
Sbjct: 413 HCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCAIGVDYPKPM 472

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H +A    + +     +Q
Sbjct: 473 VNHAEASRLNIERMRQIYQQ 492


>gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
 gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
          Length = 444

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 212/469 (45%), Gaps = 33/469 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ D   L      +    + +F+  P      G    +  +++++L  + +
Sbjct: 6   LCWFRRDLRLADQPMLLEVAKEA----VGLFVLDPRL--TRGSGQARLDYLFSALAALDE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKLLEKRLQH 129
           +L   G      +     D    +     +  V  +            R   +       
Sbjct: 60  TL---GGRLVVAE----GDPARVVPDVARELNVGAVRCTEDFAPYGRARDAAVAAALKAQ 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +       + PG + N +   Y+V+TPFR+A   +      ++       L   V+
Sbjct: 113 GRELRPAGSPYAISPGRVRNGSGNPYRVFTPFRRAWSAHGWPRPAQTGADSTRWLAAEVS 172

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                       +        GEQ A      F +  +  Y + RD PA+ GTS+LS +L
Sbjct: 173 CQTELPSPRLVRE-------AGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAHL 225

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G L PR          +       +    ++ EL WR+FY  +++ +P          
Sbjct: 226 KFGALHPRTLL-----RDIAAADADDTDKDVFVTELAWRDFYADVLSHHPRTAWHNVDRR 280

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           + ++  W+       AW++G TG+PI+DA MRQL   GWMHNR+RMITASFL KDL + W
Sbjct: 281 F-DRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDLHLPW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I+ W+
Sbjct: 340 QWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYIQRWV 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P+L ++P    H P+           YP PIVDH +     L +Y A K
Sbjct: 400 PQLRDMPGPKAHEPNPRPA------GYPPPIVDHAQERAEALLRYEAVK 442


>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
 gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
          Length = 488

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/487 (25%), Positives = 215/487 (44%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           L+W RNDLR+ D++ L+ A     A+VI  +      +           A ++ F+  S+
Sbjct: 7   LLWYRNDLRLHDHEPLHQALQT-KAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++++  +G      +          + +   +  +T ++++++    EV  +  L+ 
Sbjct: 66  ADLRENVRSRGSNLLVRRGL----PENVIPTLAKELDITTVYFHQEVTSEEVAVESALKN 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPV 179
            L    I         L     L   L          +  ++             R   +
Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKKSTIYPPFPTPKRLPSL 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-I 236
           P++ +      ++         +     F  GE    A      + K+ +  Y + R+ +
Sbjct: 182 PSVEVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCLKVYKQTRNGM 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L++G LSPR      + +  +         +  + ELIWR+F+R + A
Sbjct: 242 LGSDYSSKFSPWLALGCLSPRFI--YEQVQQYEQEQIKNDSTYWLVFELIWRDFFRFICA 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       +     I W +D      W+QG TGFP+IDA MR+L   G+M NR R  
Sbjct: 300 KHGNRIFRPSGLQGI-PIPWKEDWDRFTLWQQGKTGFPLIDANMRELAATGFMSNRGRQN 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W+IG E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 359 VASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIQKQSK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DPQG +++HWLPELN++P   +H P +            L ++YP P+VD  ++    
Sbjct: 418 DYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPVVDLMESVKAN 477

Query: 471 LNQYYAA 477
              Y AA
Sbjct: 478 EKVYNAA 484


>gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 529

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 178/491 (36%), Gaps = 27/491 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR  D+  L  A  +    V+ ++   P  W Q   S +  HF    L 
Sbjct: 16  MSYSVVWFKRDLRTHDHAPLKQALQS--GPVLCLYCIEPTLWAQPDASTQHYHFALECLR 73

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L + G+  Q        D+ E L     +     ++ + +   +          R
Sbjct: 74  DLWVQLKELGLRLQL----VAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARDRAVSR 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                               ++N  +   +       + +         S+ +P      
Sbjct: 130 WCKAQGVDWHQYKQFGVVRGVVNRDVWHLQWTEHMSGSQVSLDGSLHAVSVELPWDASKP 189

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           PV  S      D P + +      G   A  +L+ F  ++   Y      P  A +  S+
Sbjct: 190 PVATSLGLEGTDKPQRQV-----GGRARAEQVLQSFLTDRSARYRGGISSPLSASEACSR 244

Query: 245 LSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSPYL++G LS R+    ++E      +   + ++G  S+ + L W   +   +   P +
Sbjct: 245 LSPYLALGCLSVREVVQAVQEVQGARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPDI 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +    E   +   L+    G TG+P++DA +  L   GW++ R+R +  S  
Sbjct: 305 EFRNMHRGYDGLREAEHNPEHLKVLMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSIA 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L + WR   E+   + LD +   +    Q    +G   +   RI+NP  Q +  DP 
Sbjct: 365 AYPLWLHWRPVGEWLAREFLDYEPGIHWS--QLQMQSGTTGINIPRIYNPIKQARDQDPD 422

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND---------LSLNYPLPIVDHKKACHHTLN 472
           G F+R WLP +  VP  ++  P                    + P P VD + A      
Sbjct: 423 GQFVRRWLPAMRKVPDAWLFEPWRMPLGMQSRLGLTVDGPEPDIPQPSVDLEAATRAAKK 482

Query: 473 QYYAAKKQSLL 483
           + +  + Q  +
Sbjct: 483 RLFELRAQPSV 493


>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
 gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
 gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
 gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
          Length = 537

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 192/501 (38%), Gaps = 33/501 (6%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------IS 54
           M+     L+W R  LR+ DN AL  A   S+     VF+  P                  
Sbjct: 1   MATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSRAG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYN 109
             +  F+  SL  +  SL + G      +    +  +  L        C +      +  
Sbjct: 60  VNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQA 119

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
              ++ +      +E          +    +    G          KV      A  + +
Sbjct: 120 LDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELV 179

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           +             L     PS     +    QA    F  GE  AL  L K   +K + 
Sbjct: 180 MSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWV 239

Query: 230 YVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              ++            T+ +SPYL  G LS R  +  L+  + D+         S L +
Sbjct: 240 ANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLLGQ 298

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA M QL 
Sbjct: 299 LLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLL 357

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +     
Sbjct: 358 KWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ 417

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            + RI++P   GK++DP G +IRH+LP L ++P QYI+ P +            +  +YP
Sbjct: 418 -FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYP 476

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            P+V H  A      +   A 
Sbjct: 477 KPMVLHDSASKECKRKMGEAY 497


>gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
 gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
          Length = 488

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/487 (24%), Positives = 211/487 (43%), Gaps = 29/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ ++ A     A++I  +     Q++            +S F+  S+
Sbjct: 9   LIWYRNDLRLHDHQPMFQAVKQ-KAQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSI 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L Q G      +        + +   C +  +  ++++++    E++ +  LEK
Sbjct: 68  DNLRKNLQQLGSNLVVRR----GYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEK 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +  +      L     L   L          +  ++     +        +   
Sbjct: 124 ALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSL 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---------DI 236
             +   NIP   +   +  +       +          +   Y++ + R         ++
Sbjct: 184 PNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNEM 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L++G LSPR  +  + +   +L        +  + EL+WR+++R + A
Sbjct: 244 LGSDYSSKFSPWLALGCLSPRYIYEEVTKY--ELERVKNDSTYWLIFELLWRDYFRFICA 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       +       W +D    Q W+ G TG+P++DA MR+L   G+M NR R  
Sbjct: 302 KHGNKVFYSSGLQGLNL-PWKEDWQRFQLWQTGNTGYPLVDANMRELAATGFMSNRGRQN 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 361 VASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G ++RHWLPEL  +P   IH P              L ++YP PIVD  K+    
Sbjct: 420 DYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIVDFFKSIKAN 479

Query: 471 LNQYYAA 477
              Y  A
Sbjct: 480 EAIYNNA 486


>gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
 gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
          Length = 541

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 182/516 (35%), Positives = 254/516 (49%), Gaps = 50/516 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN AL A C  ++   AK+ AVF  TPEQW+ H +S  Q   I  +L  
Sbjct: 25  LMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLPI 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L    I      C +F D I  L + C    ++ +  N +YE NE+ RD+ L K+L
Sbjct: 85  LAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQL 144

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I         + PP +I  +   MY+V+TPF K     L   D++    PAI    
Sbjct: 145 AKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNNE 204

Query: 187 PV--------------------------------TPSNIPRFFDYPFQAIDPMFPIGEQN 214
            +                                         D         +P GE  
Sbjct: 205 QINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEAE 264

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           A H L +F  + + +Y   RD+P++  TS LS YL+IG LSPR C+ +  +   +L    
Sbjct: 265 ACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRND 324

Query: 275 KSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA- 325
                         W++EL WR+FYRH++ + P +   + +   T+K           A 
Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFAA 384

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD 
Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASNNGGWQW+ASTG DS PYFRI NP  Q K  D  G F++ WLPEL  +P   +H+   
Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSEDK 504

Query: 446 WLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
                        ++YP+P+V+HK A    + ++  
Sbjct: 505 MRKALSKNGAFADIDYPIPMVEHKLARQLAIAEFKK 540


>gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
 gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
          Length = 495

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 180/491 (36%), Gaps = 24/491 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M     + +++V  + DLR+ DN+A++ A       ++ +F+           S R  +F
Sbjct: 1   MNTQNKIEINVVLFKRDLRLQDNEAIHNALSTGKKTLL-LFVFEDILLNDPHYSERHWNF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  SL+ +  SL          +     +    L       ++T LF +++  I      
Sbjct: 60  IKESLIDLNNSLIAYNSEILIVRS----NINRTLQIIQETYKITHLFSHQETGIKVTYDR 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             + KR     +    ++        + +    + K      + L+  L + D       
Sbjct: 116 DKMLKRFLANNMITWVENINNGVFRGLQDRTDWIEKWENFMNQPLLSFLPKKDQLFTKKE 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
              L       +                  G   AL     F +++   Y      P  A
Sbjct: 176 VQHLA------SFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYNHHISKPLLA 229

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +  S+LSPYL+ G LS R+                     S+ + L W+  +       
Sbjct: 230 RRSCSRLSPYLAWGNLSVREVIQETTRCIEQ--NIYPKQMESFGSRLRWQAHFIQKFEME 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +           K++       ++AWK G TG+P++DA MR L   G+++ R+R +  
Sbjct: 288 DEMEFV-SINKGYRKLKKRVSERYIEAWKNGMTGYPLVDACMRCLKETGYLNFRMRALVV 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF   +L   W+          LD +   +    Q  A  G   +   R++NPT  G   
Sbjct: 347 SFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQA--GETGINMLRMYNPTKNGIAH 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP+G FI+ W+PEL  + T ++H P              L  +YP PIV+ ++   H  +
Sbjct: 405 DPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPKPIVNLQETRKHASD 464

Query: 473 QYYAAKKQSLL 483
             +  K ++ +
Sbjct: 465 ILWNMKDENTV 475


>gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
           SJ]
          Length = 434

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 167/480 (34%), Positives = 225/480 (46%), Gaps = 47/480 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK      V + W R DLR+ DN  LY A  NS   V+ +FI       +      +  F
Sbjct: 1   MKKNKD-KVSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I+  L  + +   +            ++              V +++ N  YE   + RD
Sbjct: 59  IHECLQNLSEKFRKYDGDLLTF----YNSPKNAWKEIFESFDVQEVYTNEDYEPYALSRD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K +E  L  + I  +S+ D  +     IL      Y VYTP++   ++ L  +DL S+  
Sbjct: 115 KSIEDYLTRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKS 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                      S I       F      FP          R   K+ +  Y E RD+P+I
Sbjct: 175 EKNLSKIYKFKSEIHSLMSLGFTKSHISFP---------KRIIKKKIITNYHETRDLPSI 225

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS L  +L  G + PR            L         +WLNELIWREF+  ++  +P
Sbjct: 226 NGTSLLGVHLRFGTIGPR-----------KLASIAYHTNKTWLNELIWREFFSQILFHFP 274

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V +  PF    E IEW  +    + W +G TGFP++DA MR+LN  G MHNR+RM+ AS
Sbjct: 275 HV-VNAPFREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVAS 333

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDLL+DWR GE+YF  +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FD
Sbjct: 334 FLVKDLLIDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFD 393

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P   +++ W+PE                     S NY   IVDHK+A H  +  Y  A K
Sbjct: 394 PDLIYVKKWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434


>gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
 gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
          Length = 475

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 228/478 (47%), Gaps = 17/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA     AKV+ VF   P    +  ++  +  ++  SL  +Q+
Sbjct: 6   LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G                 +       +   +F+N   E     RD+ ++  L+  
Sbjct: 65  QYVQSGSQLLILH----QQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I        L  PP +I   + + Y V++PF +   +   +  + SL            
Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180

Query: 190 PSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++       P                 GE  A   L +FC+  +Y Y ++R+ PA  GT
Sbjct: 181 AADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNFPATTGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLS  L  GVL  R  W   +        +  +    +W  EL WREFY+H + ++P++
Sbjct: 241 SQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHALYWFPAL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G    P+ +   W       QAW +G TG+PI+DAAMRQ+NTIGWMHNR RMI ASFL
Sbjct: 301 AEGAYRQPF-KTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             +IR WLPEL +V T  +        +      YPL IVDH          Y   K+
Sbjct: 419 ADYIREWLPELRSVETADLVT-GKISLEERDRCGYPLAIVDHHHQQRLFKQLYEQQKR 475


>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
 gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
          Length = 440

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 212/457 (46%), Gaps = 31/457 (6%)

Query: 7   MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M+    +V    DLR+ D+ AL AAC   D +V+ +++  P   +   +S  ++ F++ S
Sbjct: 1   MTGRTAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQS 56

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLL 123
           L  ++++L ++G      +     +++        +     +            R  +L 
Sbjct: 57  LADLREALRKRGGDLVIRRGDPVAETV----KLARKVGAEGVGLSADVSRYAHRRERRLR 112

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  +HR+  + F    ++ PG++       Y+V++P+ +A         +R     A  
Sbjct: 113 AECDRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQ------GVRWRDELAAP 166

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +     P     P +   P   +G +             +  Y +  D  A   TS
Sbjct: 167 KRVRLPDGVDPGRLPDPPKGDSPDAAVGGETVARRRLTAWLPTLDRYDDIHDDMAGDETS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G +SP    NR  +               ++ +L WR+FY  ++A +P +  
Sbjct: 227 RLSPYLRFGCVSPLAVANRAGDRDG-----------PFVRQLCWRDFYHQVVAGFPDLST 275

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                   E      D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K
Sbjct: 276 VAYRRGAREDWRD--DPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G 
Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           ++R W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
          Length = 556

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 194/510 (38%), Gaps = 45/510 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           V + W R  LR+ DN AL  A     ++   +  V+I  P  ++    S  ++ F+   +
Sbjct: 14  VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + KSL ++G            D +E L     +  VT + +            +    
Sbjct: 74  SDLDKSLRERGSRLYV----ATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129

Query: 126 RLQHRVICKSFDDSVL-------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R   +       +            PG  + +             +    L + D  ++P
Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNIP 189

Query: 179 VP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +P     +   P    +       P +             +         ++   V  R 
Sbjct: 190 LPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQSTVTARP 249

Query: 236 I--------------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAF 279
                           +   T+ LSPYLS+G LSPR+ W+ + +        +       
Sbjct: 250 DWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSKVNKTKPPV 309

Query: 280 SWLNELIWREF----YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           S   +L+WR+F         A  P         P+   + W+ D  LL+AWK G TGFP 
Sbjct: 310 SLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKLLKAWKDGKTGFPW 369

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL T GW+H+  R   A FL + DL   W +G ++F  +LLD D A NN  W W
Sbjct: 370 IDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYALNNFNWLW 429

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448
            + +G     YFR ++P    K+ D  G +IR W+PEL  +P +YI+ P           
Sbjct: 430 LSCSGFFYQ-YFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIYEPWKAPSSVLNAA 488

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              L  NYP PIVDH       +++   A 
Sbjct: 489 GIKLGDNYPNPIVDHAFVSKENMSKMSLAY 518


>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 473

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 217/477 (45%), Gaps = 25/477 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ D+ AL AA       +I VFI         G+ A     +  SL  + +
Sbjct: 8   LVWFRRDLRLADHPALCAAIE-GGGPIIPVFIHDDSVA---GLGAAPKWRLGLSLASLAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G      +      ++E L +   +     + ++R Y+   + RDK ++  L+  
Sbjct: 64  DLEDRGSRLILRR----GSALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALRED 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
               +S    V+  P ++       Y+VY+P  +A+        ++A    L      ++
Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAPDMWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++        +   P   +GE  A+  L  F    +  Y + R+ PA++ TS L
Sbjct: 180 DGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAVEATSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPRQCW+  +            GA  WL EL+WREF  HLM   P +    
Sbjct: 240 SENLTYGEVSPRQCWHAGQRALHAGA----QGAEHWLKELVWREFAYHLMYHTPHILTDN 295

Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W       + D   + AWKQG TG P +DAAMR++   G MHNR RMI AS+L K 
Sbjct: 296 WRTDWDAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+  W++G ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q ++FD  G +
Sbjct: 356 LMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEKFDRDGAY 415

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            R W+ E    P           P  W   +  + +YP  +VD     +  L  Y A
Sbjct: 416 TRRWIAEGQGQPQATALDYFKAIPRRWSLSS--TSSYPNRLVDLAGGRNRALAAYEA 470


>gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
 gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
          Length = 559

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 203/499 (40%), Gaps = 35/499 (7%)

Query: 6   AMSVH--LVWLRNDLRITDNKALYAACHNSDAKVI-AVFIATPEQWRQHGISARQSHFIY 62
            M  +  + W R  LRI DN AL  A      KV   +FI  P       +   +  F+ 
Sbjct: 35  KMPHNSTIHWFRKGLRIHDNPALLTAIQ--GTKVFRPIFILDPHFIESEKVGINRWRFLL 92

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +  S    G      +     +          +  VT+L +    E    RRD+ 
Sbjct: 93  ETLQDLDYSFRALGTRLFVVR----GNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQE 148

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181
           + +  +   +      S  L        A +     T  R   + + + A       P  
Sbjct: 149 VIELAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLM 208

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGE----QNALHILRKFCKEK 226
              TG  TP       +Y   +++ +           +P GE    Q     L +     
Sbjct: 209 ANFTGVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVC 268

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +   +         T+ LSPYL  G LSPR+ +  +KE +       K    S + +LI
Sbjct: 269 GFEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTKPPV-SLMGQLI 327

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+  + A  P+    +   P   ++ W+++   L AWK+G TG+P IDA M QL T 
Sbjct: 328 WREFFYTVAAGTPNFHQMEE-NPICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRTE 386

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL   W  G+E F   LLD D + N   W W +S+      Y
Sbjct: 387 GWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ-Y 445

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
           +R+++P + GK+ D  G +IR ++P LN +P +YI+ P +            +  +YP P
Sbjct: 446 YRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPRP 505

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVDH       + +   A+
Sbjct: 506 IVDHSIVSKRNIGRMKDAR 524


>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
          Length = 536

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 201/506 (39%), Gaps = 37/506 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52
           M + ++    L+W R  LRI DN AL  A   S+  V  VF+  P   +           
Sbjct: 1   MPSGSS---TLMWFRKGLRIHDNPALEYASKGSNF-VYPVFVIDPHYMKPDPNAFSPGST 56

Query: 53  -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                +  F+  SL  +  SL + G      +       I  L  + +++   +   +  
Sbjct: 57  RAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPY 116

Query: 112 YEINEVRRDKL------------LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           Y+  +V+                         I +       L   S L  A +     +
Sbjct: 117 YQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPSWASS 176

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
           P   ++       D+ S  +  +     +   ++ +    PF+  +      +     I 
Sbjct: 177 PLSISISSLPPVGDVGSCEISEVPTVEELGYGDVEQDEWTPFRGGESE--ALKSLRESIK 234

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            K                    T+ LSPYL  G LS R  +  L++ + ++         
Sbjct: 235 DKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNVKKHTSPPV- 293

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           S + +L+WR+F+  +    P+    K      ++I WN+D+ LL AW+   TG+P IDA 
Sbjct: 294 SLVGQLLWRDFFYTVAFGTPNFDQMKD-NRICKQIPWNEDTELLAAWRDARTGYPWIDAI 352

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GWMH+  R   A FL + DL V W  G + F   L+D D A NNG W W + +
Sbjct: 353 MVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCS 412

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDL 452
                 Y RI++P   GK++DP G +IRH+LP L ++P ++I+ P +         K  +
Sbjct: 413 SFFYQ-YNRIYSPISFGKKYDPNGNYIRHFLPVLKDMPKEFIYEPWTAPLSVQTKAKCII 471

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478
             +YP P+V H  A      +   A 
Sbjct: 472 GRDYPKPVVSHDSASKECKRKLAEAY 497


>gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
 gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
          Length = 434

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 148/482 (30%), Positives = 216/482 (44%), Gaps = 50/482 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSH 59
           MK+     V + W R DLR+ DN  LY A  +S   V+ +FI       +      R+  
Sbjct: 1   MKSK----VSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVD 55

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +I  +LL++   L                + IE  +    Q  V  +F NR YE   ++R
Sbjct: 56  YIDQALLKINTQLKLSKTRLNTFH----GNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQR 111

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  + +  +   I        ++   S +                  + L++ +      
Sbjct: 112 DVEIYEFFKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P          + I    D  F+  D  F            K     +  Y + RD PA+
Sbjct: 172 PDYNNFFRQEFTGIHSLNDIGFEKTDIAF---------ETPKLTTTIIDEYDKYRDYPAM 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           Q T+QL   L  G +S R+C     +              +WLNELIWREF+  ++  +P
Sbjct: 223 QRTTQLGIALRFGTISIRKCVAFGLKHNQ-----------TWLNELIWREFFMQILYHFP 271

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V   + F    + I+W  + H    W +G TG+PI+DA MRQLN  G+MHNR+RMI AS
Sbjct: 272 KVVD-QSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAAS 330

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD
Sbjct: 331 FLCKHLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFD 390

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               +++ W+PE                     + NYP PIV+H  A    L  Y  A K
Sbjct: 391 KNFAYLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIK 431

Query: 480 QS 481
           ++
Sbjct: 432 EN 433


>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 433

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 216/474 (45%), Gaps = 47/474 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           V + W R DLR+TDN  L+ A   S   V+ VFI            +  +  FI+ ++  
Sbjct: 4   VVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDARVEFIHDTIQS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +     + +  +      E  +    +  V  ++ N  YE   ++RD  +    
Sbjct: 63  LKNELQKIHSDMEVYHAT----PAEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISDWA 118

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  KSF D V+     IL      Y+VYTP++   ++ L +  +     P+ + T 
Sbjct: 119 AQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTH--SPSEKHTD 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQL 245
                              P              +  ++ +  Y + RD P ++  TS L
Sbjct: 177 AFLRMEAKPIVTLKQLGFTPSS------IQIPPLETLRKTIQEYDKTRDYPYLEHGTSLL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +   G +S R+            ++K      +WL+ELIWREF+  L+  +P V   +
Sbjct: 231 GIHFRFGTISIRE-----------KVVKALPLNATWLSELIWREFFMQLLFHFPHVVT-E 278

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F     ++EW       + W  G TG+P++DA MR+LNT G MHNR+RM+ ASFL K L
Sbjct: 279 SFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHMHNRVRMVVASFLTKHL 338

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YF  +LLD DL++NNG WQWAA TG D+ PYFRIFNP  Q ++FDP   +I
Sbjct: 339 FIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIFNPISQQEKFDPDFIYI 398

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+PE                     + +Y  PI++HKKA       +   K 
Sbjct: 399 KKWVPEFG-------------------TSSYIEPIIEHKKATERAKLLFSVLKN 433


>gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
 gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
          Length = 451

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 220/473 (46%), Gaps = 25/473 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W R DLR+ DN AL A    +   V+ + +  P     H  +  +  +  A++L
Sbjct: 1   MTV-IWWARRDLRLGDNPALCA--AAAAGPVLPLVVLDPALL--HDGARPREAWYAANVL 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G              +E + +  L+   T +  +R+      RRD  +  R
Sbjct: 56  ALDDQL---GGELCLRS----GSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDR 108

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I      S   + PG I+      Y+V+  F++A  ++   A  +          
Sbjct: 109 LAEHGIDWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQLPDRVHWARP 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +           +  P+ P GE  AL    +F  +++  Y + RD P    +S+L
Sbjct: 169 PAGGAAERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +G + PR     L             GA  + +EL WR+FY  ++  +P      
Sbjct: 229 SPYLKVGAVHPRTLLTGL---------GSSDGAAKYASELCWRDFYADVLYHHPDSLR-T 278

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   +E+        AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL
Sbjct: 279 DLTKALAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDL 338

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V W  G  +F+  LLDGD ASN  GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++
Sbjct: 339 HVWWPHGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYV 398

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL ++      AP    D       YP PIVDH +    TL +Y   +
Sbjct: 399 RRYVPELRHLDGAAALAPWKHTDGYAHG--YPAPIVDHAEERAVTLARYGTVR 449


>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
 gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
          Length = 489

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 133/489 (27%), Positives = 216/489 (44%), Gaps = 24/489 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ DN AL AA     + V+ VF+  PE+  Q         ++  SL+Q+  
Sbjct: 5   LVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQLSS 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      + +    +++ L         +++FYN  Y+   + RD  +++ L   
Sbjct: 65  SLERLGAPLLVRRTAG---TLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLADH 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  K+F   +L  P  I +   Q++  +  F    +           P   + L G + 
Sbjct: 122 GISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLPPRQLLSLPGYLC 181

Query: 190 PSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            S                   +   +  G          F    +  Y  +R       T
Sbjct: 182 QSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSVTT 241

Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLSP+L  G +S R+ +  ++ ++F             +L  L  RE+ R+L   +P  
Sbjct: 242 SQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSFNFP-F 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +   +   W  D    ++W+QG TG+P++DA MRQL   GW+H ++R++ +SFL
Sbjct: 301 THKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVVVSSFL 360

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R  NP ++G + DP+
Sbjct: 361 VKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGYKLDPK 420

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC---HHTLN 472
           G ++R WLPEL+ VP  +IH P             +L  NYP PIV+   A       L+
Sbjct: 421 GEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQQQALD 480

Query: 473 QYYAAKKQS 481
           + +  KK +
Sbjct: 481 EMW--KKSA 487


>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
 gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
          Length = 442

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 142/438 (32%), Positives = 207/438 (47%), Gaps = 19/438 (4%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 ++  SL  +   ++ +G      +          +     +     +++N   +
Sbjct: 11  GGAARWWLAQSLRALGAEIAARGGSLILRKGPAAG----VIPEEARESGARAVYWNGIAQ 66

Query: 114 INEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----- 167
                 ++ LE  L    +  +SF   +L+PP +I N   +  +V+TPF + ++      
Sbjct: 67  APHQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLSLGDPP 126

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             + A  +  P P I      +    P   D+     +   P GE +A   LR F K   
Sbjct: 127 KPLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRERWTP-GEASARARLRDFLKTIA 185

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   RD P   GTS LSP+L  G LSPRQ W+               G   +L+EL W
Sbjct: 186 RGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHA-ARFAAAEDAALGPGIEKFLSELGW 244

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF RHL+  +P +          +   W  D  +L AW++G TG+PI+DA +R+L   G
Sbjct: 245 REFCRHLLHDHPDLATEN-LQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAGLRELWHTG 303

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            MHNR+RM+ ASFLVK LL+DWR GE +F   L+D D  SN   WQW A  G D+ PYFR
Sbjct: 304 VMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPYFR 363

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIV 461
           +FNP +QG++FDP GT++R W+PEL  +P + IH P              L   YP PIV
Sbjct: 364 VFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLGKTYPQPIV 423

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +     L+ Y   +K
Sbjct: 424 DHARGRERALSAYAKIRK 441


>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 457

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 221/474 (46%), Gaps = 30/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+TD+ AL  A       V+  F    +  R   +      +++ SL  +  
Sbjct: 7   LVWLRRDLRLTDHPALTHAAQQ--GPVVLAFCHDDQDGRA--LGGASRWWLHHSLAALGD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +                      +           +++N   +      +  + + L+  
Sbjct: 63  T-----------VTLARGRCEAEIPRLAEACGARAVYWNASADPALSATEARVRQALK-- 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  ++F    L   G++  +A   ++V+TPF +  +           P P +    P  P
Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169

Query: 191 --SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             +         ++ +  ++  GE  A   L  F    V  Y   RD+PA  GTS LSP+
Sbjct: 170 LAALELMPKLDWWRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGTSLLSPH 229

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +SPRQ W+  +            G  ++L EL WREF RHL+A  P +    P  
Sbjct: 230 LAFGEISPRQIWHAARALPPG------DGIHTFLKELGWREFSRHLLARQPDLATI-PLR 282

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P      W  D   L+ W+ G TG+PIIDA +RQL   GWMHNR+RMI ASFL+KDLL+ 
Sbjct: 283 PEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIKDLLIP 342

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP  QG++FDP GT++R W
Sbjct: 343 WQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFDPDGTYVRTW 402

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           +PEL ++P  ++H P            YP P+VDH  A    L  +   K    
Sbjct: 403 VPELAHLPKAFVHQPWKMGRA----PGYPPPMVDHALARTRALAAFKGLKDDPA 452


>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
 gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
          Length = 486

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 211/486 (43%), Gaps = 29/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           ++W R+DLR+ D++ L  A  ++ A++I ++   P Q+         +   +  F+  S+
Sbjct: 9   ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G            +    +     Q  +  ++Y+++    E+  ++ LEK
Sbjct: 68  ADLRHNLQKIGSNLLVR----IGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEK 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +         L     L   ++         +  ++          P   +   
Sbjct: 124 ALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSIIYPPYTPPKQLPTF 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------ALHILRKFCKEKVYYYVEQRD-I 236
             + P  IP   +     +                         + ++ +  Y + R+ +
Sbjct: 184 PDIEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQRDCLKNYKQTRNGM 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G LSPR  + ++ +     +       +  + EL+WR+++R +  
Sbjct: 244 LGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRVKND--STYWLVFELLWRDYFRFICL 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +      K  +   +   W ++    Q+W  G TGFP++DA MR+L   G+M NR R  
Sbjct: 302 KHGRKVFYKSGLQGVKI-PWGENWQQFQSWCDGLTGFPLVDANMRELAATGFMSNRGRQN 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN   Q +
Sbjct: 361 VASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQSQ 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHT 470
            +DP G +++HWLPEL ++P   +H+P    ++  +       ++YP P+VD +++    
Sbjct: 420 DYDPMGDYVKHWLPELASIPHGKVHSPWRLSNQEQIRFGMRLGVDYPYPMVDLQRSVEAN 479

Query: 471 LNQYYA 476
              Y  
Sbjct: 480 RRIYEK 485


>gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 512

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 185/472 (39%), Gaps = 19/472 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VWL+ DLRI D++ L  A    +  V+ +F+     W    +S R   F+  SL ++
Sbjct: 2   VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L Q+G        +   + I+ L          +LF + +          +  +   
Sbjct: 60  DRRLDQRGARLY----TAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWM 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
               C   +         + +      K Y  +  A +    +A       PA    G  
Sbjct: 116 KARGCTMKEWPHFGVTRGLKSRDDFQ-KGYERYVNAPVVPAPEAVRGIRHAPAWLTKGAG 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLS 246
                P     P  AI      GE+ A  +L+ F +E+   Y  +   P    +  S+LS
Sbjct: 175 E----PGGIALPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKPFASAESCSRLS 230

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYL+ G LS R  +        +L          ++L+ L W   +   +   P +   +
Sbjct: 231 PYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAFLSRLHWHCHFIQRLEDEPEIAH-R 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P  + +         Q W  G TG P+IDAAMR L+  GW++ R R +  SF+   L
Sbjct: 290 TMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFRSRAMVISFVCNTL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWR   E      LD +   +    Q  A  G       RI+NP  QG+  DP G F+
Sbjct: 350 MLDWRRPAEDLSRLFLDYEPGIHYSQVQMQA--GTTGFNTIRIYNPVKQGQEHDPSGAFV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R ++PEL+ V   +IH P            YP+P+VD  KA        +  
Sbjct: 408 RRFVPELSAVSDAFIHEPWKLPA--GPPKGYPMPMVDVAKANGEARRILWGL 457


>gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
          Length = 574

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 185/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L             VF+  P       +   +  F+   L  +  
Sbjct: 24  VHWFRKGLRLHDNPSLREGL-TGATTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 83  SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 138

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + ++ ++   +     V +  +    T
Sbjct: 139 GISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGSAYT 198

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 199 PLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 258

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 259 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 316

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 317 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 375

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 434

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +         K  +  +Y LP+V+H K+ 
Sbjct: 435 FGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKSS 494

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 495 RINIERMKQVYQQ 507


>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 477

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 222/480 (46%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66
           L W R DLR+ DN  + AA   S A V  V++  P   +       ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFLLESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G      +     D ++ L     +     + +NR  E     RD+ + KR
Sbjct: 66  ELQQRWRAAGSRLLILE----GDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKR 121

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181
           LQ        D   L +PP  +   A   Y+VY PF +     +      ++  P+    
Sbjct: 122 LQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVD 181

Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L     P                    GE  AL  L  F    +  Y   R+ P++
Sbjct: 182 LHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLFADGPLSGYEPDRNFPSV 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            GTS LS  LS+G LSPRQ W   ++        + ++    W  EL WREFY+  +  +
Sbjct: 242 VGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G P+     +  W  +     +W++G TG PIIDAAMRQLN  GWMHNR RMI A
Sbjct: 302 PELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRCRMIVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +F
Sbjct: 361 SFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G +IR W+PEL +V T+ +    +          YP P++ HK         Y   +
Sbjct: 420 DADGEYIRRWVPELRHVNTKDL---LTGEIGGLERRGYPEPLITHKTQQALFKTLYATIR 476


>gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 496

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/483 (21%), Positives = 187/483 (38%), Gaps = 25/483 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+VW + DLR+ DN+A+  A   S+ +V+ +++             R   FI  S++ +
Sbjct: 8   IHVVWFKRDLRLQDNEAIQNAL-ASNKRVLFLYVFENSLIEDPHYDTRHWDFIKQSVVAL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L +        Q     + +   +      +V  +F +++  +           R  
Sbjct: 67  NAELKKYDTKVLCVQT----EVVNAFNQIFDSFKVDTVFSHQETGLLITYNRDKEFTRYC 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +++       +LN A    K         I+N + A+         ++    
Sbjct: 123 RNNSVTWKENNNNGVLRGLLNRADWFDKWDDYMYDTQIKNTLNAEKFISIEEIEQIEAYF 182

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
               +       FQ        G + A      F + +   Y+     PA   Q  S+LS
Sbjct: 183 NTVALETPKHSYFQ------QGGTKMAWKYADTFFQTRHEKYMSNISKPALARQSCSRLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +S RQ +    +   D   +       +++ L W+  +               
Sbjct: 237 PYLAWGNVSIRQIFQEATKRKTDANKRHLGA---FISRLRWQAHFIQKFE-MEHTMENAS 292

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                +K++ +      +AW+ G TGFP+IDA+MR L   G+++ R+R +  SF    L 
Sbjct: 293 INKGYQKLKKSISLEYQKAWETGTTGFPLIDASMRCLKETGYLNFRMRAMVVSFFTHILW 352

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+   ++     LD +   +    Q  A  G   +   RI+NP       D  GTFI+
Sbjct: 353 QPWQSSSQHLSKLFLDFEPGIHFSQLQMNA--GETGINTLRIYNPIKNSIEHDEDGTFIK 410

Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL N+   +IH P+         +  +L +NYP PIVD K A     +  +  KK 
Sbjct: 411 KWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKIARKKASDTLWEMKKN 470

Query: 481 SLL 483
           S +
Sbjct: 471 SDV 473


>gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
 gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
          Length = 434

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 207/473 (43%), Gaps = 43/473 (9%)

Query: 7   MSVHLV--WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS  LV  W R DLR+ DN  L  A   S   V+ VFI  P        +  +  FIY +
Sbjct: 1   MSASLVVFWFRRDLRLDDNVGLSHAL-ASGQPVLPVFIFDPSILTGLPENDARVTFIYDT 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++  L ++           + +SIE  D       VT ++ N  YE     RD+ + 
Sbjct: 60  LQTLRTQLEERYSS---SIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVC 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L+ R +  +     +L   + +        V         + +           + +L
Sbjct: 117 EWLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSEKL 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +   + P         +     I          +   + + +Y   RD PA+  TS 
Sbjct: 177 GNMIKHLHSPNLSLTDIGFVRSAVTI-------PASRLDTKLLQHYAHDRDFPALTATSL 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L P+L  G +S RQ + +             +    + NELIWREF+  ++  +P     
Sbjct: 230 LGPHLRFGTISIRQVFQQAL----------NTSNDIFGNELIWREFFSQILWHFPH-TQN 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++I+W   +   + W +G TG+P++DA MRQLN  G MHNR+RMITASFL K 
Sbjct: 279 SSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLCKH 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD D+ASN G WQW A  G D+ PYFRIFNP  Q K+FD   ++
Sbjct: 339 LLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNFSY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+                    +  +  YP P++ H  A    L  Y  A
Sbjct: 399 IQTWV-------------------NDWRTPTYPAPMIKHTDARARCLETYQQA 432


>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
 gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
          Length = 447

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 166/487 (34%), Positives = 243/487 (49%), Gaps = 53/487 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S+ + W R DLR+ DN  LY A  N +  V+ +FI               +  +IYA+L 
Sbjct: 3   SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFIFDRHILDDLEDKKDLRVAYIYAALQ 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--------QRVTKLFYNRQYEINEVR 118
           Q+Q+SL+      Q      +D   +  +              +V  ++ N  YE    +
Sbjct: 62  QIQQSLAD---DLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNHDYEPYARQ 118

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD+ +++ L +  +   SF D V+     +L +A + Y V+TP+ K    +L  A L+  
Sbjct: 119 RDEKVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAHLQER 178

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            V +           +P         +D              +   K+ V  Y + RD P
Sbjct: 179 LVASHAQNLLKLSPQLPLMPLEKTGFVDINKS-------FSSKTIKKQLVIDYQQNRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A+QGTS+LS +L  G +S R+     ++              +WLNELIWREFY  ++  
Sbjct: 232 AVQGTSRLSVHLRFGTVSIRKIVKAAQKYS-----------DTWLNELIWREFYMMILYS 280

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V   K F P  + I+W  +    + W +G TG+PI+DA MR+LNT G+MHNR+RMIT
Sbjct: 281 FPHVVD-KSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMRELNTTGFMHNRVRMIT 339

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +LLD DL++NNGGWQWAA +G D+ PYFR+FNP  Q ++
Sbjct: 340 ASFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAAPYFRVFNPYAQTEK 399

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA- 476
           FD Q  +IR W+PE                   +LS  YP PIV+HK A    L+ Y A 
Sbjct: 400 FDKQRQYIRQWVPEF------------------ELSR-YPAPIVEHKFARQRALDTYKAG 440

Query: 477 AKKQSLL 483
             K++ +
Sbjct: 441 LSKEATV 447


>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
 gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
          Length = 537

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/495 (24%), Positives = 187/495 (37%), Gaps = 34/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60
            L+W R  LR+ DN AL  A   S   V  VF+  P                    +  F
Sbjct: 8   SLMWFRKGLRVHDNPALDYASKGSKF-VYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRF 66

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-----SYCLQQRVTKLFY------- 108
           +  SL+ +  SL + G      +       I  L        C +      +        
Sbjct: 67  LLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVK 126

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
                        +         I +       L   S L  A Q     +P    +   
Sbjct: 127 EYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPLPTTISSL 186

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
               D+ S  +  +     +   ++ +    PF+  +      ++    I  K       
Sbjct: 187 PPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESE--ALKRLREKITNKEWVANFE 244

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                        T+ LSPYL  G LS R  +  L++ + ++         S L +L+WR
Sbjct: 245 KPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSPPV-SLLGQLLWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F+  +    P+    K      ++I WN+D  LL AW++  TG+P IDA M QL   GW
Sbjct: 304 DFFYTVAFGTPNFDQMKE-NRICKQIPWNEDDELLSAWREARTGYPWIDAIMVQLRKWGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           MH+  R   A FL + DL V W  G   F   L+D D A NNG W W + +      Y R
Sbjct: 363 MHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YNR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           I++P   GK++DP G +I+H+LP L ++P +YI+ P +         K  +  +YP P+V
Sbjct: 422 IYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRDYPKPVV 481

Query: 462 DHKKACHHTLNQYYA 476
            H  A      +   
Sbjct: 482 AHDSASKECKKKLAE 496


>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
           albilineans GPE PC73]
 gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
           [Xanthomonas albilineans]
          Length = 503

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 211/464 (45%), Gaps = 15/464 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ D  AL+AA       V  V++ +PE        A    ++  SL 
Sbjct: 31  MSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQRSLA 89

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G      +      +   L     +     +++NR+YE     RD  L++ 
Sbjct: 90  ALDAQLRACGSRLILRRGP----AEHALRQVIAECGAVAVYWNRRYEPATQPRDARLKRE 145

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181
           L+       S + ++L  P  +       YKV+TPF ++ +           P     P 
Sbjct: 146 LRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPP 205

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             L      +          +     +  GEQ A   L  F    +  YV  RD P   G
Sbjct: 206 QALHSLALDALGLMSAHDWDRGFWECWQPGEQGAHEALDVFVDGALRDYVAGRDRPDQVG 265

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G ++P +  + L++           G   ++ +L WR+F  HL+  +P  
Sbjct: 266 TSRLSPHLHFGEIAPWRIVSALQQHRRAATGTAIDG---YIRQLGWRDFAYHLLHHFPHT 322

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +            LQAW++G +G PI+DA +R+L   GWMHNR+RMI AS+L
Sbjct: 323 PERNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMIVASYL 382

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 383 CKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKFDPQ 442

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDH 463
           G +I  W+PEL  +P     AP     +   ++ +YP  PIVD 
Sbjct: 443 GAYIARWVPELAALPVADRFAPWLVPQRLARVAPHYPRQPIVDL 486


>gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera]
          Length = 648

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 125/491 (25%), Positives = 193/491 (39%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A    VFI  P       +   +  F+   L  +  
Sbjct: 39  VHWFRKGLRLHDNPALREGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 98  SLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 153

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +   S        I+        +     +ALI ++        P+ A  L G  T
Sbjct: 154 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 213

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P N      +    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 214 PLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 273

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +  +         S   +++WREF+   
Sbjct: 274 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 331

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 332 ATRNPNFDRME-GNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 390

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 391 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 449

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YP+P+VDH KA 
Sbjct: 450 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHSKAS 509

Query: 468 HHTLNQYYAAK 478
              + +     
Sbjct: 510 QVNIERIKQVY 520


>gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
 gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
          Length = 485

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 175/477 (36%), Gaps = 24/477 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR+ D+  L+ A       V+ ++I  P   +    S R   FI  SL  +
Sbjct: 2   VNVVWFKRDLRLQDHAPLHLALQKKQ-PVLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK L          +     ++ +   +   Q  +  +F +++  +    +     K L 
Sbjct: 61  QKQLEAYHTQVLIVE----GNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKLLF 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +  +         ++            +   + Q+L+                 +
Sbjct: 117 KSLSIQWKEFVN----NGVIRGLQNRKTWINLWENFMSQDLLYFSASLGQFENQNQIDSL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
                P                G   AL  L+ F +++   Y +    P  A +  S+LS
Sbjct: 173 KGQLSPVDLSTERNL--NFQKGGRPTALRYLKGFLQDRYPNYQKNISKPLLARKSCSRLS 230

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++ GVLS R+      E       K     F   + L W+  +               
Sbjct: 231 PYIAWGVLSMREVIQASIEIQDKTKHKQALSQFQ--SRLRWQAHFIQKFEMEYHAEFQN- 287

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F      +E   +  L +AWK+G TGFP++DA+M+ L   G+++ R+R +  SF    L 
Sbjct: 288 FNSAFNVLEKPYNKALAEAWKKGETGFPLVDASMKCLIQTGYLNFRMRALLVSFFTHLLW 347

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+    +  S  LD +   +    Q  A  G   +   RI+NP     + D  G FI 
Sbjct: 348 QTWQEASSHLASLFLDFEPGIHYPQLQMQA--GTTGIHTLRIYNPVKNSYKHDLDGEFIL 405

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
            +LP L  +P +++H P              L  +YP PI++      H  +  +  
Sbjct: 406 TYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYPRPIIEMATTRQHASDSIWKI 462


>gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 509

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 188/489 (38%), Gaps = 30/489 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S+  
Sbjct: 4   KINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSICD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L++             +D    L+S   Q  +T LF +++  +N            
Sbjct: 63  LNTQLARFNSRVYIFN----EDMQTLLESLHSQFEITNLFSHQEIGLNNT---------F 109

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +  K++     +        A+   K          Q  +QA +       I+    
Sbjct: 110 ERDIAIKAWCQHHHINWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLT- 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
           +T    P       Q  +     G + A  +++ F  E+   Y +    P+      S+L
Sbjct: 169 LTDYQTPILPSAYTQDNEHFQHGGPRLAREVMQSFFAERGKGYQKGISSPSLSRTHCSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304
           SPYL+ G +S RQ +    + +       K         +    ++ H M  + S C   
Sbjct: 229 SPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAFVSRLHWHCHFMQKFESECTME 288

Query: 305 ----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                P        +  + +  ++ W QG TG PIIDA MR L   G+++ R+R +  SF
Sbjct: 289 FKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINFRMRAMLVSF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           +   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  DP
Sbjct: 349 VTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQDP 406

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G FI+ W PEL  +P +Y+H P          +   L  +YP P++D   A      + 
Sbjct: 407 TGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTTASKEARERL 466

Query: 475 YAAKKQSLL 483
           +  +++  +
Sbjct: 467 WQYRERPDV 475


>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
 gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
          Length = 435

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 48/471 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASL 65
           M    V  R DLR+ DN  L  A    D +V+ VF+  P Q       SA    F+  SL
Sbjct: 1   MPCAFV-FRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +   L  +       Q        + L    ++     +++N  Y    + RD  + +
Sbjct: 59  LDLDMQLKHRSSRLHILQ----GYPEKVLPELKVE----AIYFNEDYTPFSLNRDNAIRE 110

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                       + +LL P        + Y V+T F     +  V+  +++     + L 
Sbjct: 111 ---TMRGRVKSCEDLLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNYLTLD 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P T              ++   P G Q  L  L +            R+ P ++GT++L
Sbjct: 168 LPGTEVLKLE--------VERGIPGGRQEGLKRLERARNLNYSM----RNFPGVEGTTKL 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY+  GV+SPR+ +  + EE                 +L WR+FY  L  + P V  G 
Sbjct: 216 SPYIKFGVVSPREVYWAVNEEIR--------------RQLYWRDFYTLLAYYNPHV-FGH 260

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    + I W  +   L+AWKQG TG+PI+DA MR+LN  G+MHNR RMITASFLVK L
Sbjct: 261 SYKREYDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVL 320

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            VDWRIGE YF ++L+D D + NNG WQW ASTG D +  FR+FNP +Q ++FDP   +I
Sbjct: 321 HVDWRIGERYFATKLVDYDPSVNNGNWQWVASTGADYM--FRVFNPWLQQRKFDPDAVYI 378

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + W+PEL ++P + IH  + +         YP PIVD+ +        Y  
Sbjct: 379 KTWVPELKDLPAEKIHEIYRFKVS-----GYPSPIVDYSEEVKKARKMYED 424


>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 473

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 217/476 (45%), Gaps = 25/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++D+ AL AAC      VI +FI      +   + A     +  +L  +  
Sbjct: 8   IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDN---QSDALGAAPKFRLGLALACLGD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +KG      +     D+++ L     Q     ++++R Y+   + RD  ++  L+  
Sbjct: 64  TLKEKGSRLILRR----GDALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119

Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185
            +         +  P ++       YKV+TP+ K++        +              +
Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPLATPSEIRAPEDWPDS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          + P   +GE  A   L  F  + V  Y E RD+P   GTS L
Sbjct: 180 DVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDESRDMPGEDGTSGL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G +SP  CW+  +    +       GA ++L EL WREF  HLM   P +    
Sbjct: 240 SENLSLGEISPAHCWHAGQRAMQEGK----RGAETFLKELAWREFAYHLMYHTPRILDQN 295

Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W       ++    + AWKQG TG P +DAAMR+L   G MHNR RMI AS+L K 
Sbjct: 296 WREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMHNRGRMIVASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+  WRIG+++F   L+D D A+N  GWQWAA +G D+ P+FRIFNP  Q  RFD    +
Sbjct: 356 LMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFNPETQLDRFDKGRNY 415

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            R W+ E    P++         P  W  + D   +YP PIVD  +     L+ Y 
Sbjct: 416 TRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSEGRARALDAYR 469


>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
 gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
 gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
          Length = 535

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 188/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L      +      VF+  P       +   +  F+   L  + +
Sbjct: 20  VHWFRRGLRLHDNPSLREGLKGA-RTFRCVFVLDPWFAGSSNVGINKWRFLLQCLEDLDR 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  L    Q  
Sbjct: 79  SLRKLNSRLFVIR----GQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I++       +      A+I  +        PV    L G  T
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMT 254

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 255 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAF--PPLSLHGQLLWREFFYCA 312

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+K++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 313 ATKNPNFDKM-IGNPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 371

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 372 HAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPIK 430

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N+P+QYIH P +  +      K  +  +Y LP+V+H  A 
Sbjct: 431 FGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAAS 490

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 491 RVNIQRMKQVYQQ 503


>gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 458

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 216/476 (45%), Gaps = 25/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+           +  +   +   L 
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            D +E + +   +    ++        +  RR++LL   
Sbjct: 60  DLDSGLRDRGGRLVVRS----GDLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115

Query: 127 LQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L      +      + +L PGS+   +   + V+TP+ +   +  V+  L        R+
Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPL----AAPRRV 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P    + P         + P  P  GE++A   L  + +  +  Y +  D  A   TS
Sbjct: 172 RVPDGVGSEPLPARGDLTGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPDLHLGALSPVELVHRARRAGG-------PGAEAFVRQLAWRDFHHQVLAARPHASA 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                                AW+ G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P+ R+ NPT Q +RFDP G 
Sbjct: 345 TLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFDPGGA 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +  + +H P             YP PIVD  +     L+++  A+
Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRAR 455


>gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 694

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 140/505 (27%), Positives = 227/505 (44%), Gaps = 34/505 (6%)

Query: 1   MKATTAMS--------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52
           M A+ +MS          +VW R DLR+ DN A  AA   +  +V+  ++  PE+   + 
Sbjct: 1   MSASLSMSGGAGEAATRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYY 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                  ++  SL  +  SL + G       + +   D++  L         T LF+N  
Sbjct: 60  PGRVSRWWLSQSLKHLDASLRRLGASRLVTRRST---DTVAALLELVRSTGATHLFFNHL 116

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170
           Y+   + RD  +++ L    I     +S L   P  +L+     + ++T F    +  +V
Sbjct: 117 YDPLSLVRDHRVKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLC-MV 175

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKE 225
                 LP   I        S+    F+   +      +   +  G QNA      F   
Sbjct: 176 DPPAPMLPPKRINSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFING 235

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSW 281
            +  Y   R       TS LSPYL  G LS R+ +++++ +      +     + G   +
Sbjct: 236 PLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLF 295

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L  +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR
Sbjct: 296 LRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMR 354

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D
Sbjct: 355 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPD 414

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455
                RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  N
Sbjct: 415 GRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSN 474

Query: 456 YPLPIVDHKKACHH---TLNQYYAA 477
           YPLPIV+  +A       L++ +  
Sbjct: 475 YPLPIVELDEAKSRLQDALSEMWEL 499


>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
          Length = 671

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 185/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    VF+  P       +   +  F+   L  +  
Sbjct: 26  VHWFRKGLRLHDNPSLKEGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 85  SLRKLNSRLFVIR----GQPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKEL 140

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + ++  +   +  +  V A  +    T
Sbjct: 141 GISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIGSAYT 200

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 201 PLKDDHDDHYGVPTLEELGFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 260

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 261 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 318

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 319 ATKNPNFDKMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 377

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 378 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 436

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +         K  +   Y LP+V+H K+ 
Sbjct: 437 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKSS 496

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 497 RINIERMKQVYQQ 509


>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
 gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
          Length = 639

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 112/501 (22%), Positives = 193/501 (38%), Gaps = 35/501 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ + W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + +V++L +    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSCLFVIR----GQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +  V         L     I+        +     + L+ ++   D          +
Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIG------EQNALHILRKFCKEKV 227
              VTP +      Y    ++            ++P G                    + 
Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTVAWQE 235

Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +   + +    +     LSPYL  G LS R  + +L + +  +         S  ++++
Sbjct: 236 NFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVKKNMNPSI-SLYDKIL 294

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W++++  L  W +  TGFP IDA M QL   
Sbjct: 295 WREFFYTAATNNPRFDRME-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQE 353

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W   + +      +
Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQF 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
           F  + P   G+R DP G FIR +LP L + P +YI+ P +         K  + ++YP P
Sbjct: 413 FHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCVIGVDYPKP 472

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 473 MVNHAEASRLNIERMRQIYQQ 493


>gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 509

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 195/496 (39%), Gaps = 34/496 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK      +++VW + DLR++D++ L  A  N     + ++   P        + R   F
Sbjct: 1   MKEK----INIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRF 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +Y S++++   L++              +  + L+S  +Q  +  +F +++  +N     
Sbjct: 56  VYQSIVELNNQLARFNACVYIFNL----NMNDLLESLKMQFEIVNIFSHQEIGLNNT--- 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                  +   + K++     +        A+   K          Q  +QA +      
Sbjct: 109 ------FERDKVIKAWCQHNHINWQESQTGAVIRGKKNRNNWNERWQQTMQAPIAVPNWK 162

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-- 238
           +I+ T  +     P       Q  D     G  +A  +++ F  E+   Y +    P+  
Sbjct: 163 SIK-TITLNNYQAPELPSAYTQDHDSFQQGGPLHARTVMQSFFAERGKGYQKGISSPSLS 221

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +S RQ +    +E+       +         +    ++ H M  +
Sbjct: 222 QTHCSRLSPYLAWGNISLRQVYQMAIDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKF 281

Query: 299 PSVCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            S C  +          +   +       ++ W QG TG PIIDA MR L   G+++ R+
Sbjct: 282 ESECSMEFLALNPGYHVFPYRNDERVKNDIERWAQGQTGIPIIDACMRCLKATGYINFRM 341

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  SF+   L + W+       +  LD +   +    Q  AS     +   R +NP  
Sbjct: 342 RAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIK 399

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467
           Q +  DP G+FI+ W PEL  +P +Y+H P          +   L  +YP P++D   A 
Sbjct: 400 QSEDQDPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTAAS 459

Query: 468 HHTLNQYYAAKKQSLL 483
                + +  ++++ +
Sbjct: 460 KEARERLWQYRERADV 475


>gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas
           denitrificans DSM 1251]
          Length = 445

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 119/473 (25%), Positives = 197/473 (41%), Gaps = 39/473 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L         +V+ +FI      ++     ++  FI+  LL+++ 
Sbjct: 4   VLWFRRDLRVKDNPLLTL-----GGEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L   G+  +      +       +      +   +  + +     +     KL  + L 
Sbjct: 59  DLQHIGLDLKIF----YGTPEAVFEHLSKFDEVVASGDYDSYAKSRDLHISHKLHFRYLH 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIR 183
              I K            IL      Y V+TPF K       +++L +  +    +    
Sbjct: 115 DTYIFKPK---------EILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQNILIGSD 165

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             G               ++I          A     +  K+ +  Y + RD   +  +S
Sbjct: 166 YEGITKVDIGITKLSLAIESIGFKAQNLNIIAPQKKLENFKKNISKYSQMRDFLDVDISS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS  L  G +S R+    + +               ++ +LI+R+FY + +   P V  
Sbjct: 226 SLSVDLRFGTISIREVLLEVLKLAEVS--------EPFIRQLIFRDFYAYALFHTPHVES 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +    +         A+    TG PI+DA +R+L   G+MHNR+RM+ ASF  K
Sbjct: 278 ENYKYSFNGIEDK----EKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVRMVVASFFTK 333

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+ W+ GE +F   LLD D ASN   WQW+A TG D  PYFRIFNP +Q K+FD +  
Sbjct: 334 DLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQSKKFDKEAL 393

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ ++ EL+ +  + IH     L  +    +YP PIV HK+A    +  +  
Sbjct: 394 YIKRYVSELSTIEIKNIHKEEYLLCADI--KDYPKPIVTHKEASKRAVELFKK 444


>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
 gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
          Length = 485

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/484 (26%), Positives = 225/484 (46%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++A+Y A      ++I  +     Q+             ++ F+  S+
Sbjct: 4   LIWYRNDLRVHDHEAIYQAVQE-QFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +        + +     + ++ K++Y+++    E+  +K + K
Sbjct: 63  ADLRQSLESLGGNLIIRR----GKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNK 118

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSLPV 179
            L    +  K+F  + L  P  +     Q+ +++T FRK + ++           +   +
Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKL 178

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD-I 236
           P I L    + +++        +     F  GE      ++++  +      Y E R+ +
Sbjct: 179 PKIELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNEM 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ S +LS G LSPR  +  +++   +         +  + EL+WR+F+R +  
Sbjct: 239 LGTNYSSKFSAWLSFGCLSPRYIYEEVQKY--EQTRVKNDSTYWLIFELLWRDFFRFMCR 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +    K  +     + W +D      W +G TG+P++DA MR+L   G+M NR R  
Sbjct: 297 KHGNKIFYKSGL-QELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQN 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L +DW +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 356 VASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQSK 414

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G ++RHWLPEL  +    IH P+    +        L +NYP PIVD  ++  H 
Sbjct: 415 DYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKHN 474

Query: 471 LNQY 474
              Y
Sbjct: 475 EKIY 478


>gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 503

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 189/490 (38%), Gaps = 30/490 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S++
Sbjct: 1   MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L++          +  D     L+S   Q  +  +F +++  +N           
Sbjct: 60  ELNNQLTRFNACVYIFNLNMGD----LLESLKTQFEIVNIFSHQEIGLNNT--------- 106

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +     K +     +        A+   K          Q  +QA +      +I+ T 
Sbjct: 107 FERDKAIKVWCQHNHINWQESQTGAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIK-TI 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
            +     P       Q  D     G   A  +L+ F  E+   Y +    P++     S+
Sbjct: 166 TLNNYQAPELPSAYTQNHDSFQQGGPLQARTVLQSFFAERGKGYQKGISSPSLSQVHCSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S RQ +    +E+       +         +    ++ H M  + S C  
Sbjct: 226 LSPYLAWGNISLRQVYQMAFDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECSM 285

Query: 305 KPFIPWTEKIEWNKDSHLL-----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +          +            + W QG TG PIIDA MR L   G+++ R+R +  S
Sbjct: 286 EFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRAMLVS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F+   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  D
Sbjct: 346 FVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P G+FI+ W PEL  +P +Y+H P          +   L  +YP P++D   A      +
Sbjct: 404 PTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASKAARER 463

Query: 474 YYAAKKQSLL 483
            +  ++++ +
Sbjct: 464 LWQYRERADV 473


>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
          Length = 625

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 125/491 (25%), Positives = 192/491 (39%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A    VFI  P       +   +  F+   L  +  
Sbjct: 40  VHWFRKGLRLHDNPALKEGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 98

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 99  SLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 154

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +   S        I+        +     +ALI ++        P+ A  L G  T
Sbjct: 155 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 214

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        +    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 215 PLTDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 274

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +  +         S   +++WREF+   
Sbjct: 275 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 332

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 333 ATRNPNFDRME-GNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 391

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 392 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 450

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YPLP+VDH KA 
Sbjct: 451 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPLPMVDHSKAS 510

Query: 468 HHTLNQYYAAK 478
              + +     
Sbjct: 511 QVNIERIKQVY 521


>gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
          Length = 455

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 134/476 (28%), Positives = 203/476 (42%), Gaps = 33/476 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLRI DN  L       + +V+ +FI  P          R+   IY +LL ++ 
Sbjct: 4   ILWFRRDLRIEDNPLLSL-----EGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +G+         +   ++       +    ++  +  Y+   + RD+ +   L   
Sbjct: 59  SLQMRGLDLALF----YGKPVDVFKWLLSRHHFDEVCASGDYDHYALERDREISHLLP-- 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               S DD+ +  P  I+ +    Y V+TPF            +R        LT     
Sbjct: 113 --FNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---------YYVEQRDIPAIQG 241
           S               +  IG  +     R+     +          +Y + RD  A+ G
Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQSSPAIQLDQFASKIAHYSQDRDYMALNG 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS  L  G LS R     +  +              +  +LI+REFY  L+  +P +
Sbjct: 231 TSGLSTQLRFGTLSVRAVLRWMLIQKKRGSDT-----EPFFRQLIFREFYAMLLYHFPHL 285

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P+        +     A+    TG PI+DA +R+L   G MHNR RM+ ASF 
Sbjct: 286 SEQNFRYPF----RGIANEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLCASFF 341

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+ W+ GE +F   L D D ASN   WQW+A TG D  PYFRIFNP  QGK+FD  
Sbjct: 342 TKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKKFDSD 401

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           G +IR W+P+L +V +  +H   + L    L  +YP PIV  K +    L+ + + 
Sbjct: 402 GVYIRRWMPQLASVSSTTLHN-ETALFSLTL-CDYPHPIVYQKTSAKRALDHFKSI 455


>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
 gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti]
          Length = 553

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/507 (23%), Positives = 198/507 (39%), Gaps = 40/507 (7%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQS 58
           MS     + W R  LR+ DN AL AA            +  VFI  P   +   +   + 
Sbjct: 1   MSSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRW 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  + ++L +        +     + ++       +  V+ L +    E   ++
Sbjct: 61  RFLQQTLADLDRNLRKINSRLYVVR----GNPVDVFPKLFQEWNVSFLTFEHDIEPYSIK 116

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RD  +E++ +   +    + S+ +     +          T  +   + + ++       
Sbjct: 117 RDATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIPEPVAT 176

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI-------------DPMFPIGEQNALHILRKFCKE 225
              I         +  R     +                +  FP GE  AL  L    K 
Sbjct: 177 PKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMKR 236

Query: 226 KVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K +    ++   +       T+ LSPY+  G LS R     L+        K      S 
Sbjct: 237 KSWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMRELQTVI--KGQKHSQPPVSL 294

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY    A  P+             + W+ +   L+AW  G TG+P IDA MR
Sbjct: 295 IGQLMWREFYYCAAADEPNFDKM-VGNSICLHVPWDSNKEFLEAWTHGRTGYPFIDAIMR 353

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++  
Sbjct: 354 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGNWMWLSASAF 413

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
               YFR+++P   GK+ DP+G FI+ ++PEL   P+  I+ P              +  
Sbjct: 414 FHQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEPWKASVDVQKKLGCIIGK 472

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +YP  IV H++     + +   A +++
Sbjct: 473 DYPNRIVIHEEIHKKNIQKMTEAYRKN 499


>gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
 gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
          Length = 516

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 188/493 (38%), Gaps = 31/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++      ++I  P           +  F+   L  +  
Sbjct: 21  VHWFRKGLRLHDNPALKEGLKSASG-FRCIYILDPWFAGSCSKGVNRWRFLLECLEDLDS 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     + +VT+L +    E     RDK +    Q  
Sbjct: 80  SLRKLNSRLFLIR----GQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +      S  L     +          T  R   I +L+   +             +  
Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAEDVEGLDT 195

Query: 191 SNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P                 P     PM+  GE  A   L +  + K +    +R   +
Sbjct: 196 FIDPNHEDKYGIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMS 255

Query: 239 ----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
               +   + LSPYL  G LSPR  + +L E +  +     +   S   +L+WREF+  +
Sbjct: 256 PASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQKVRKTTNTPL-SLHGQLLWREFFFTV 314

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                         P   +I W+K++ LL  W  G TG+P IDA M QL   GW+H   R
Sbjct: 315 ACNNRQFDHMVD-NPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLAR 373

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + + +    +F  + P  
Sbjct: 374 HAVACFLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIWLSCS-SFYQQFFHCYCPVK 432

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G+R DP G ++R +LP L N P++YI  P +         K  +  +YPLPIVDH +A 
Sbjct: 433 FGRRTDPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEAS 492

Query: 468 HHTLNQYYAAKKQ 480
           H  + +       
Sbjct: 493 HRNIERMRKVYNN 505


>gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5]
 gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter
           cryohalolentis K5]
          Length = 541

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 188/516 (36%), Positives = 259/516 (50%), Gaps = 50/516 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN AL A C  ++   A++ AVF  TPEQW+ H +S  Q   I  +L  
Sbjct: 25  LMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLPI 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L Q  I+     C +F D I  L + C    ++ +  N +YE NEV RD+LL K+L
Sbjct: 85  LAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQL 144

Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  I         + PP SI  +   MY+V+TPF K     L  +D++     AI    
Sbjct: 145 ANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDNK 204

Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------------------------FPIGEQN 214
            V  +      +                                         +P GE  
Sbjct: 205 QVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEAE 264

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           A H L  F  + +  Y   RD+P++Q TSQLS YL+IG +SPR C+ +  +    L    
Sbjct: 265 ACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRND 324

Query: 275 KSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA- 325
                         W++EL WR+FYRH++ + P +   + +   T+K           A 
Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFAA 384

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD 
Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASNNGGWQW+ASTG DS PYFRI NP  Q K  D +G FI+ WLPEL  +PT  +H    
Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHREDK 504

Query: 446 WLDKND-----LSLNYPLPIVDHKKACHHTLNQYYA 476
                        ++YP+PIV+HK A    + ++  
Sbjct: 505 MRKALSKNGTFADIDYPVPIVEHKLARQLVIAEFKK 540


>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
 gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
          Length = 514

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 202/492 (41%), Gaps = 31/492 (6%)

Query: 8   SVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           SV+++ W R DLR+ D++ L  A     A++   +   P  +           A +  F+
Sbjct: 3   SVNILLWYRRDLRLHDHQPLQEALAQ-QAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFL 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++++L  KG      Q    D   + +   C Q ++  ++ +R+    E R ++
Sbjct: 62  REAIQDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVER 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L + LQ + +         L     L   +          +  ++              
Sbjct: 118 KLRQALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQ 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE---------QNALHILRKFCKEKVYYYVE 232
           +                        + P G                   +  +++  Y E
Sbjct: 178 LPPLPETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKE 237

Query: 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+       +S+ SP+L++G LS R    ++ E   +      +  +  + EL+WR+++
Sbjct: 238 TRNGLLGADYSSKFSPWLALGCLSARYIAAQVAEY--EQKRIANNSTYWLIFELLWRDYF 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R + A + +       +   +   W +D    + W+ G TG P +DA MR+L   G+M N
Sbjct: 296 RWICAKHGNQIFQPEGLQGVKI-PWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFMSN 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R    SFL K+L +DWR G  +F SQL+D D+ SN G W + A  GND+   FR FN 
Sbjct: 355 RGRQNVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNI 413

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
             Q K +DPQG ++RHWLPEL  +P + IH P     K        L   YP P+VD + 
Sbjct: 414 PKQAKDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDLQT 473

Query: 466 ACHHTLNQYYAA 477
           +       Y  A
Sbjct: 474 SVQENERIYQKA 485


>gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
 gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
          Length = 499

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 174/479 (36%), Gaps = 21/479 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLR+ D+  L AA +      + +++  PE       S R   F+  SLL++ 
Sbjct: 8   QVVWFKRDLRLEDHAPLAAAAN--GKPTLLLYVFEPELMNDPHYSERHWRFVTQSLLEMN 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L          +       +E LD+      ++ L  + +  +               
Sbjct: 66  GRLEPLNQRVYILK----GSMLEVLDAIHAHNPISNLLSHEETGLRVTYERDKAISTWCR 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +      +           +     +  +      ++   +     +  +PA      ++
Sbjct: 122 QHRVNWQEYQSNGVKRGRYSRDGWAHDWH-----RVMSQPLAEPEWAQLLPAEDQQRCLS 176

Query: 190 PSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +       +   DP      +G            + K+Y+    + + + +  S+LS
Sbjct: 177 DYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKALSKPLLSRKHCSRLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G LS RQ + RL+ E             +  + L W   +             +P
Sbjct: 237 PYLAWGNLSIRQVYQRLQAE--RGRSGWGRALSALNSRLHWHCHFIQKFE-SEDRIEFEP 293

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 + + +      QAW  G TG P +DA +R L   G++H R R +  S L   + 
Sbjct: 294 MNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNTGYLHFRGRAMIVSALCHLMQ 353

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+          LD +   +    Q     G   +   RI+NP  QG   DP   FI+
Sbjct: 354 GRWQFAARQLAQWFLDFEPGIHYAQIQ--MQVGLTGINTLRIYNPVKQGLDHDPDAVFIK 411

Query: 427 HWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
            W+PEL+ +P   +H P     +++  + +NYP P++D  +A       Y+  ++  L+
Sbjct: 412 KWVPELSELPVPLVHTPWELGPIERACMDMNYPDPVIDIAQAHKAARALYWDRRQNPLV 470


>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
          Length = 558

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/501 (22%), Positives = 195/501 (38%), Gaps = 38/501 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LRI DN AL  A        +   +  +F+  P   +   +   +  F+  +L
Sbjct: 8   IHWFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRFLQQTL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + ++L          +     + ++       +  V+ L Y    E   V+RDK +E 
Sbjct: 68  VNLDENLRTINSRLYVVR----GNPVQIFPELFDRWNVSLLTYEHDIEPYAVQRDKTVEG 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +    + S  +     +          T  +   + +     L       +   
Sbjct: 124 HAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQKLPGK 183

Query: 186 G--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKEKV 227
           G                 P  +          ++  FP GE          L +      
Sbjct: 184 GVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRKAWICS 243

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           +             T+ LSPYL  G LS R  ++R++E       K      S + +++W
Sbjct: 244 FEKPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETI--KGQKHSQPPVSLIGQMMW 301

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE + + +A                +++W+ +   L AW +G TG+P IDA MRQL   G
Sbjct: 302 RE-FYYCVAAVTPNFDKMSGNDVCIQVDWDTNKEYLNAWTEGRTGYPFIDAIMRQLRQEG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YF
Sbjct: 361 WIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQ-YF 419

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           R+++P   GK+ DP+G +I+ ++PEL   P+  I+ P     +        +  +YP  I
Sbjct: 420 RVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGKDYPKRI 479

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V H++     + +  AA +++
Sbjct: 480 VVHEEISKTNIQRMSAAYRRN 500


>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
 gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
          Length = 440

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 210/457 (45%), Gaps = 31/457 (6%)

Query: 7   MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M+    +V    DLR+ D+ AL AAC   D +V+ +++  P   +   +S  ++ F++ S
Sbjct: 1   MTGRTAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQS 56

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLL 123
           L  ++++L ++G      +     +++        +     +            R  +L 
Sbjct: 57  LADLREALRKRGGDLVIRRGDPVAETV----KLARKVGAEGVGLSADVSRYAHRRERRLR 112

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  +HR+  + F    ++ PG++       Y+V++P+ +A         +R     A  
Sbjct: 113 AECDRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQ------GVRWRDELAAP 166

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +     P     P +   P   +G +             +  Y +  D  A   TS
Sbjct: 167 KRVRLPDGVDPGRLPDPPKGDSPDAAVGGEAVARRRLTAWLPTLDRYDDIHDDMAGDETS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G +SP                +       ++ +L WR+FY  ++A +P +  
Sbjct: 227 RLSPYLRFGCVSPLAV-----------ATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLST 275

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                   E      D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K
Sbjct: 276 VAYRRGAREDWRD--DPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G 
Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           ++R W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
          Length = 443

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 224/473 (47%), Gaps = 32/473 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DNK L  A +     V+ +FI       +     ++  FIY ++L ++
Sbjct: 3   QILWFRRDLRIIDNKILEKASNE----VLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           KSL + G+         FD           +      F       +        +K++  
Sbjct: 59  KSLQELGLDLYIF----FDTPKNVFTKLKNE-----GFDEVLCSCDFDSYSIKRDKQINE 109

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  K + DS L+ P   L      YKV+TPF    +  L  +D     +    L     
Sbjct: 110 ILPLKRYLDSFLINPNKNLKKDGTPYKVFTPFY-KSLSWLTSSDKIGEAMINPNLKLSKY 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            +  P   +  F+ +    P   + +        KEKV  Y + RDI    GTS L   L
Sbjct: 169 ENKTPTLDELGFERV--TLPEFLKKSPQNRLDDFKEKVKEYEKNRDIFYKDGTSNLGVDL 226

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G LSPR  +N +K+   +        + +++ +L WREFY +++  +P+         
Sbjct: 227 RFGTLSPRMIFNEIKKSDKE-------NSEAFIRQLFWREFYNYILFHFPNSENENW--- 276

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
              +I W++D    Q W +G TG PIIDAAMR  N  G MHNRLRMI +SFL K+LL+DW
Sbjct: 277 NGIEISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHNRLRMIVSSFLCKNLLIDW 336

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GE+YF  +LLD + +SN G WQWAASTG DSVPYFRIFNP +Q  +FD +  FI+  +
Sbjct: 337 KKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNPYLQSAKFDKEAIFIKSVM 396

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL +V  + IH       +  L   Y   IVD K +    +  +  AK   +
Sbjct: 397 PELKDVDAKLIH------IEGALKDKYVNSIVDIKYSRDRAMRIFKEAKNAKV 443


>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 486

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 143/479 (29%), Positives = 228/479 (47%), Gaps = 23/479 (4%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              +LR  D   L     ++   +I +FI  P+   +  +      ++Y S+   ++   
Sbjct: 10  FYQNLRFHDQPLLLEVLQHTQ-PIIPIFINDPKVIER--LGEASQWWLYQSIRAFKQQWK 66

Query: 74  -QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
               I           DS+  L     +    K++  ++Y   E   D+ + + L    I
Sbjct: 67  SAYNIELILRT----GDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNRDGI 122

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRLTG 186
             K F+  +L  P +I N     ++++TPF K         +L   D           + 
Sbjct: 123 TIKFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADLPAPDHIFNGYNQPINSD 182

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQL 245
            ++            + +   + + E  AL+ L  F K  +  Y   RD I +   +SQL
Sbjct: 183 DLSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPSFSSQL 242

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G +S ++ +N +    ++     +    ++L E+ WREF  +L+  +PS+    
Sbjct: 243 SPYLRWGQISAKKIFNEVI-HTMERDPTIQQDGNTFLKEIGWREFSYYLLYHHPSMQEV- 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     +   +  +  LL+ W++G TGFPIIDA MRQL   GWM NRLRMI ASFL+KDL
Sbjct: 301 PLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASFLIKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++W+ G+ +F+  L+D D A+N   WQW A  G D+ PYFRIFNP  QGK+FD +G +I
Sbjct: 361 LINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFDSEGKYI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL ++PT+YIH P              +  +YP PIVDH    +  L+ +   K
Sbjct: 421 RKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDCWKEFK 479


>gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
 gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
          Length = 483

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/490 (23%), Positives = 190/490 (38%), Gaps = 36/490 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           MS  LVW R DLR  DN  L  A   +D  V+ ++           +    +   ++ F+
Sbjct: 1   MSTVLVWFRRDLRCHDNATLRRAVAEADT-VVPLYCLPDRLTGEGMFGLDRVGPHRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +++SL  +             D    +     +     +++       E     
Sbjct: 60  IESLADLRESLRDRDGELYVRS----GDPGTVVPEAAEEFDADAVYWQALPGPEERDEAG 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNH-----ALQMYKVYTPFRKALIQNLVQADLRS 176
            +   L    I      +  L     L                           +     
Sbjct: 116 SVRAGLADAGIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEW 175

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +  P           ++P   D+ F   +                   ++V  YV +RD 
Sbjct: 176 VHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGLDRVATYVWERDC 235

Query: 237 PAI-----------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
                           +S+ SP+LS G LSPRQ    +++   D +       +  + EL
Sbjct: 236 LREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRVEND--STYWLVFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+F+++ +A Y +       I   + I W +D    + W +G TG P +DA MR+LN 
Sbjct: 294 TWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETGIPFVDANMRELNA 353

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR R   ASFL  +L +DWR+G  YF S+L+D D+ASN   W + +  GNDS   
Sbjct: 354 TGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNWAYQSQVGNDSRDS 413

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
           +  F    Q   +DP+G ++  W PEL+ +P +Y+H P +  +         L  +YP P
Sbjct: 414 Y--FEIVGQATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQADYGVELGTDYPAP 471

Query: 460 IVDHKKACHH 469
           ++D + +   
Sbjct: 472 MIDLEASYEK 481


>gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  + +L Y    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   +  +  + A  +
Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      +   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V 
Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like)
           [Ornithorhynchus anatinus]
          Length = 582

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/485 (24%), Positives = 191/485 (39%), Gaps = 31/485 (6%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R+ DN AL AA   +   V  V+I  P       +   +  F+  SL  +  SL +    
Sbjct: 20  RLHDNPALQAALRGA-RSVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 78

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
               +        +       +  VT+L +    E     RD  + K  +   +    ++
Sbjct: 79  LFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134

Query: 139 SVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
           S        I+    Q   +     +A+I  +         V + ++ G           
Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194

Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----T 242
            Y   +++            ++  GE  AL  L K  + K +    +R            
Sbjct: 195 TYGVPSLEELGFPTDGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASP 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPYL  G LS R  + RL + +  +         S   +L+WREF+       P   
Sbjct: 255 TGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLYGQLLWREFFYTAATNNPRFD 313

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL 
Sbjct: 314 RME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 372

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP 
Sbjct: 373 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPS 431

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + +  
Sbjct: 432 GDFIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMK 491

Query: 476 AAKKQ 480
              +Q
Sbjct: 492 QIYQQ 496


>gi|219888079|gb|ACL54414.1| unknown [Zea mays]
          Length = 688

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 26/491 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        +I  SL 
Sbjct: 1   MRI-VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLN 58

Query: 67  QVQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +  SL + G       + +   D+   L         T +++N  Y+   + RD+ L++
Sbjct: 59  HLDASLRRLGAGKLVTRRSA---DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKE 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I     +S L   P  +++   Q + ++ PF    +          LP   I  
Sbjct: 116 MLAAEGIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINS 175

Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    F+   +      +   +  G QNA   L  F    +  Y   R     
Sbjct: 176 GDLSMCPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADS 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSP+L  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L 
Sbjct: 236 ASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLS 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +PS    +P +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R+
Sbjct: 296 FNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASF VK L + WR G +YF   LLD DL S+  GWQ+   +  D     RI NP  +G
Sbjct: 355 VVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEG 414

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC-- 467
            +FDP G ++R W+PEL  +PT++IH P             +L  NYPLPIV+   A   
Sbjct: 415 YKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGR 474

Query: 468 -HHTLNQYYAA 477
               L++ +  
Sbjct: 475 LQAALSEMWQL 485


>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 434

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 204/471 (43%), Gaps = 44/471 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L W R DLRI DN  LY A    + +VI +FI   E  ++      +   I  +L  
Sbjct: 3   KVTLFWFRRDLRIQDNCGLYHALK-GENRVIPIFIFDKEILKKLPKQDARVEMILLALGA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  ++ +     + +                 Q  + K+  N  YE     RD  ++  L
Sbjct: 62  IDIAMKRN----RCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLL 117

Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I         +     ++      YKVYTP+ +  ++   +  L+  P      + 
Sbjct: 118 EAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYPSEVELDSL 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S               +             +F    +  Y   R+ PA+  TS+L 
Sbjct: 178 ASNESLPDLNLSDLGFETSGIAQP--------EYRFDDTLIDQYEATRNFPALDQTSRLG 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +S R+  N+                 ++L ELIWREF+  ++  +P     K 
Sbjct: 230 AHLRFGTVSIRRLVNQASSR----------SNNTFLKELIWREFFMQILWHFP-YTQQKS 278

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P  E+I W  +    + W  G TG+P++DA MR+LN  G+MHNR+RM+  SFL K LL
Sbjct: 279 FKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHLL 338

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +LLD +++SN G WQW A  G D+ PYFRIFNP+ Q K+FD Q  +I+
Sbjct: 339 IDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQLQYIQ 398

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+P    +                   +YP PIVDHK A    L  Y  A
Sbjct: 399 KWVPNFQEL-------------------DYPSPIVDHKYARERCLTTYKEA 430


>gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
 gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
          Length = 497

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 187/477 (39%), Gaps = 31/477 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+ALY +  ++D  ++ ++I   E W Q   S RQ  F   S+L +
Sbjct: 4   INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL + G            + I   +    +  V  ++ +++       +     K   
Sbjct: 62  RNSLKEIGQPLIIRT----GNVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWA 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +          +N      K      + LI+  ++            +   +
Sbjct: 118 ANKKIIWREFLQFSVFRGNINRDDWSKKWKKNTERELIKRPLR---------ISPIDFDI 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
                 + F +           G +  +  ++ F  EK+  Y +    P       S+LS
Sbjct: 169 GEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSRLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY+S G +S ++ +           +   + +  + + L W   +   +   P +     
Sbjct: 229 PYISWGCISLKEIFY-------KANLNKNNNSIMFKSRLTWHCHFIQKLESEPELEFCD- 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P+ +         LL  W QG TG+P IDA MR LN  GW++ R+R +  SF   +L 
Sbjct: 281 FHPYFKNSRTKNT-ELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DP+G FIR
Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPEGEFIR 397

Query: 427 HWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL NV   +IH P             L Y  PIVD  K       +     ++
Sbjct: 398 KWVPELKNVAIDFIHEPWILSKFNCDEYAKLEYIKPIVDISKTSREARKKIQEITQK 454


>gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
 gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
          Length = 487

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 131/490 (26%), Positives = 209/490 (42%), Gaps = 38/490 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHF 60
           M+  L W RNDLR+ DN+    A  N+D +V+ VF+  P  + +H       +SA +++F
Sbjct: 1   MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  +++SL  +G               + L     +   T ++ +++    E  ++
Sbjct: 60  LLESVADLRQSLRSRGADLIVR----VGKPADVLAELAGEIGATAVYASKEVTHEETTQE 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L  +L+   I         L     L   +          +  ++             
Sbjct: 116 TKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPT 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNA--LHILRKFCKEK 226
            I L   + P  IP      F   D              F  GE  A        +  + 
Sbjct: 176 RIELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQTDL 235

Query: 227 VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y E R+       +S+ S +L+ G LSPR+ +  +     + +       +  + EL
Sbjct: 236 IATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETERV--RNESTYWLIFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+F+R +   + +    +  I       + +D  L Q W +G+TG P IDA MR++N 
Sbjct: 294 LWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMREMNA 353

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFLV DL +DW  G  YF S+L+D D  SN G W + A  GND   +
Sbjct: 354 TGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGNDPRQF 413

Query: 406 ----FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455
                R FN   Q  R+D QG +++HWLPEL  VP + +H   S   +        L  +
Sbjct: 414 SNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVVLGQD 473

Query: 456 YPLPIVDHKK 465
           YPLP+VD  K
Sbjct: 474 YPLPVVDPNK 483


>gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
 gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
          Length = 457

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 208/471 (44%), Gaps = 26/471 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   + W R DLR++D+ AL AA   +     +V+A+++  P  WR       +  ++ A
Sbjct: 1   MPT-ICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRA--AGTPRLAYLAA 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +     G             +   + +   Q   + +  +   E    RRD+ +
Sbjct: 58  SLRSLDE---ATGGRLVVRH----GRADRVVPAVARQVGASSVHVSAATEPYGRRRDEAV 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E  L   V          + PG +       Y+V+TPFR A + +               
Sbjct: 111 EAALD--VPLVRTGCPYAVAPGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWA 168

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   + P            + P GE+ A      F +E +  Y   R+ P +  TS
Sbjct: 169 ALASDGLPDAPATDV-------TLPPAGERAARERWHAFVREDLAGYDVDRNRPDLDVTS 221

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +S +L  G + PR     L +              ++ +EL WREF+  ++  +P+   
Sbjct: 222 WMSVHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAAR 281

Query: 304 G--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +P               AW  G TG+P++DA MRQL   GW+HNR+RM+ ASFL
Sbjct: 282 TSLREVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFL 341

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL + W+ G  +FM  L+DGD+  N   WQW A TG D+ PYFR+FNP  Q ++FDP 
Sbjct: 342 VKDLHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPD 401

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           GT++R W+PEL +VP + +H P +      L   YP  +VDH       L 
Sbjct: 402 GTYVRRWVPELRDVPDRAVHEPWTLP--GGLPAGYPERVVDHAHEREVALA 450


>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
          Length = 540

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 66  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +           + +       I +    P +     FP GE  AL  + +  K++++ 
Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKASLVDQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
          Length = 540

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 66  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                        + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
 gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
          Length = 534

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 147/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV + 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
 gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
 gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
          Length = 489

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 213/490 (43%), Gaps = 30/490 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62
              LVW RNDLR+ D++ L+ A   S   + AV+   P Q+ Q           +S+F+ 
Sbjct: 6   PTVLVWFRNDLRLHDHEPLHRALK-SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQ 64

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  + +SL + G               + +     Q     ++Y+R+    E+  ++ 
Sbjct: 65  QSVQNLAESLQKVGNKLLV----TTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERN 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L K+L    I         L     L  ++Q         +  I+    +       P+ 
Sbjct: 121 LVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQ 180

Query: 183 RLTGP--------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            L  P          P   P+        +          A      +  +++  Y E R
Sbjct: 181 LLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETR 240

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +S+ SP+L++G LSPR  +  +K    + +          + EL+WR+F+R 
Sbjct: 241 NGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSND--STHWLIFELLWRDFFRF 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   Y +    +  +   +   W +D    + W+ G TG+P++DA MR+LN  G+M NR 
Sbjct: 299 VAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRG 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   ASFL K+L +DWR G E+F S L+D D+ SN G W + A  GND+   FR FN   
Sbjct: 358 RQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNIPK 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
           Q +++DPQGT++RHWLPEL N+P   IH P              L ++YP P V+  ++ 
Sbjct: 417 QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSV 476

Query: 468 HHTLNQYYAA 477
                +    
Sbjct: 477 E-ARRKIEQM 485


>gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
 gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
          Length = 516

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/489 (19%), Positives = 169/489 (34%), Gaps = 28/489 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+ D+  L  A  +    V+ +++  P  W Q   + +   F+  SL 
Sbjct: 1   MSYTVVWFKRDLRVHDHAPLVHAAAH--GPVLCLYVVEPSLWAQPDSALQHYQFLRESLR 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L   G   Q        +  E L      Q   +L  + +               
Sbjct: 59  DLAQQLRSCGARLQL----ALGEVPEVLARLHALQPFARLVSHEETGNGATYARD----- 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C+    +    P   +   L   + +    +A +Q           + +I L  
Sbjct: 110 LAVARWCRRQGVAWQEWPQHGVVRRLPSRERWHGLWQAHMQAPCLPPPLPASLRSISLPW 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244
             T                     G      +L  F   +  +Y      P    T+   
Sbjct: 170 SDTWPAPETMELADAHDPPQRQRGGRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACSR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-------KSGAFSWLNELIWREFYRHLMAF 297
           LSPYL++G L  R+     +   V L           + G  ++++ + W   +   +  
Sbjct: 230 LSPYLALGCLGMREVVQATQLRQVQLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLES 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +        +    E+  +     A + G TG+PI+DA +  L   GW++ R+R + 
Sbjct: 290 EPELEWRNLHRGYDGLREYAWNPAHFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAML 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            S     L + WR    +   Q LD +   +    Q     G   +   R++NP  Q + 
Sbjct: 350 VSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQD 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
            DP G F+R WLP L  VP  ++  P              +  +   P+VD   A     
Sbjct: 408 HDPHGVFVRRWLPALRRVPDAWLFEPWRMAPDVQARCGVRVGQDIAAPLVDLASATKAAK 467

Query: 472 NQYYAAKKQ 480
            + +A + Q
Sbjct: 468 ARIHALRNQ 476


>gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio]
 gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  + +L Y    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                 +      S  L     +          T  R   + + ++A +         + 
Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVM 175

Query: 186 GPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           GP T                             ++P GE  AL  L +  + K +    +
Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V 
Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 477

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 165/486 (33%), Positives = 229/486 (47%), Gaps = 24/486 (4%)

Query: 7   MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHF 60
           M+    L W R DLR+TDN  L AA   S A V  V++  P+          ++  +  F
Sbjct: 1   MTTPRVLFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+++Q+     G      +     D ++ L     +     + +NR  E     RD
Sbjct: 60  LIESLIELQQRWRDAGSRLLVVE----GDPVQLLPQLAERIAAEAVVWNRDVEPYARERD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + +RLQ        D   LL    +L       Y+VY PF +     +      ++P 
Sbjct: 116 RQVAQRLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPA 175

Query: 180 PA--IRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           PA  + L     PS  P                    GE  A+  L  FC   ++ Y   
Sbjct: 176 PAGLVDLDPAAVPSGEPLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEPD 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292
           R+ P + GTS LS  LS+G LSPRQ W+  +E       + +      W  EL WREFY+
Sbjct: 236 RNFPGVVGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQ 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +  +P +  G P+     +  W  +      W++G TG PIIDAAMRQLN  GWMHNR
Sbjct: 296 QALFHFPELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 355 CRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 413

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q  +FD  G +IR W+PEL +V T+ +    S         +YP P+V+HK        
Sbjct: 414 TQASKFDAAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVNHKTQQAKFKA 470

Query: 473 QYYAAK 478
            Y   +
Sbjct: 471 LYATIR 476


>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
 gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
          Length = 486

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 148/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV + 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
          Length = 540

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 198/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 66  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                        + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
 gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
 gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
          Length = 536

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 178/499 (35%), Gaps = 34/499 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A   +      +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K   + G      +                +  + KL + +  E     RD+ ++   + 
Sbjct: 65  KQFKKYGGRLLLVK----GKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACRE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             + C+      L  P +++     +  +        +  +              +    
Sbjct: 121 IGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVDNAKLRGIKFGT 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC---------------------KEKV 227
            P      F    +  +P           I                            + 
Sbjct: 181 LPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCRG 240

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y         +     LSP L  G LS R+ +  L++ F  +             +LIW
Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCSTQYITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE++  +    P            +    + +   L+ W  G TGFP +DAAMRQL   G
Sbjct: 301 REYFYTMSVNNPHYGQMTDNPICLDIPWKSPEGDELERWASGRTGFPFVDAAMRQLRLEG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405
           W+H+ +R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ +  
Sbjct: 361 WLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
                P   G+R DP G ++R ++PEL  VPT+YI+ P              +  +YP P
Sbjct: 421 GECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERANCIIGKDYPAP 480

Query: 460 IVDHKKACHHTLNQYYAAK 478
           +V+H  A     N     K
Sbjct: 481 VVNHIVAAQRNRNAMEDTK 499


>gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
 gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
          Length = 475

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 214/468 (45%), Gaps = 20/468 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQK 70
                DLRI DN  L +A  +S++ VI  F A          +   +  F+  SL  +  
Sbjct: 11  HIFTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRLAFLSESLSDLSG 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           ++++KG   +++       +++  +  C                   R + L +      
Sbjct: 70  AIAEKGGEIRFYDEG----ALKLAEKLCRTGVEAVYMTRDYTPYAIKRENSLKKTCNDAG 125

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLPVPAIRLTGPVT 189
                   ++L  P  +     + YKV+TPF   A +  + + +  +    +        
Sbjct: 126 CSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEPETCTFQNFSREELFDGA 185

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +IP       +A +  F  G    L +L      ++  Y ++RD PA   TS LS +L
Sbjct: 186 SHDIPFGKSGTEEAKNRAFSGGRSEGLRLL--GETGRLKNYEDERDFPAKACTSMLSAHL 243

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R+   R+ +                + +L WR+F+ H+   YP V    PF  
Sbjct: 244 RFGTVSVREICRRISD--------TLGPGHGLIRQLYWRDFFTHIAYHYPHV-FKGPFQK 294

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E + W     L   W +G TGFPIIDA MR+LN  G+MHNR R+  ASFLVKDL +DW
Sbjct: 295 RFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNRERLAAASFLVKDLHIDW 354

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP +Q K+FDP   +IR W+
Sbjct: 355 RSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPWLQQKKFDPDCIYIRRWV 414

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           PEL+++  + IH        +     YP PIVDHK         Y  A
Sbjct: 415 PELSDLEPKEIHNLDK--TGSVPPAGYPNPIVDHKNEARAAKIIYSGA 460


>gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 537

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 183/489 (37%), Gaps = 29/489 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+++G            +  E L+S        +L+ + +             +   
Sbjct: 107 RARLAKRGQPLIVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVR--- 159

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                        +P   ++       +    ++ ++ + LV       PV ++    P 
Sbjct: 160 -DWARAHEVPFTEVPSRGVVRGPHDRDEWADRWKASMDRPLVHPPDALQPVDSV---APG 215

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +       P  A        E +         + + Y     R  PA    S++S +
Sbjct: 216 PMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTECSRISVH 275

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S R+    L+    +L       A +    L   +   H  + +       P I
Sbjct: 276 LAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLEDAPRI 335

Query: 309 PWTEKIEWN-------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                I           D  L  AW  G TGFP++DA MR L   GW++ R+R +  SF 
Sbjct: 336 ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFA 395

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
             D  +DWR     +   + D     +    Q    +G   +   RI+NP  QGK  DP 
Sbjct: 396 AYDCWLDWRRFAPTYGGLMADYVPGIHYP--QVQMQSGTTGINRVRIYNPVKQGKEQDPD 453

Query: 422 GTFIRHWLPELNNVP-TQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           GTFIR W+PEL+++  T Y+HAP              +  +YP  +VDH  A HH  +  
Sbjct: 454 GTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHHAQDAI 513

Query: 475 YAAKKQSLL 483
           +  +++  +
Sbjct: 514 HELRQRPEI 522


>gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 485

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 123/484 (25%), Positives = 213/484 (44%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++A+Y A      ++I  +     Q+             ++ F+  S+
Sbjct: 4   LIWYRNDLRVHDHEAIYRAIQE-QLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q+SL   G      +        E +     + ++ +++Y+++    E+  +K + K
Sbjct: 63  ANLQQSLEGLGGNLIIRR----GKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNK 118

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +      +  L     L   +          +  I+   +          +   
Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKL 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD-I 236
             +   N+P   D     +         F  GE      ++++  +      Y E R+ +
Sbjct: 179 PKIDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNEM 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ S +LS+G LSPR  +  +++   +         +  + EL+WR+F+R + +
Sbjct: 239 LGTNYSSKFSAWLSLGCLSPRYIYEEVQKY--EQTRVKNDSTYWLIFELLWRDFFRFICS 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +    K  +       W +D      W +G TG+P++DA MR+L   G+M NR R  
Sbjct: 297 KHGNKIFYKSGLQELNL-PWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQN 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+   FR FN   Q K
Sbjct: 356 VASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQSK 414

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
            +DP+G ++RHWLPEL  +    IH P+    +        L +NYP PIVD  ++  H 
Sbjct: 415 DYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPRPIVDFFQSIKHN 474

Query: 471 LNQY 474
              Y
Sbjct: 475 EKIY 478


>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
          Length = 543

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 119/496 (23%), Positives = 194/496 (39%), Gaps = 33/496 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQ 67
            + W R  LR+ DN AL AA   +   V  V+I  P        S    +  F+  SL  
Sbjct: 8   SVHWFRKGLRLHDNPALLAALRGA-RCVRCVYILDPWFAASSSSSGGVNRWRFLLQSLED 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL + G      +        +       +  VT+L +    E     RD  + K  
Sbjct: 67  LDSSLRKLGSRLFVGR----GQPADVFPRLFKEWGVTRLTFQYYSEPFGKERDAAIMKLA 122

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +    + S        I+        +     +A++  +         +   ++  
Sbjct: 123 KEAGVEVIVESSHTLYDLDKIIELNGNSPPLTYKRFQAIVSRMELPRRPVPSITRQQMEK 182

Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                       Y   +++            ++P GE  AL  L +  + K +    +R 
Sbjct: 183 CRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHLERKAWVAHYERP 242

Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                      + LSPYL  G LS R  + RL+E +  +         S   +L+WREF+
Sbjct: 243 RMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKVKKNSPPPL-SLFGQLLWREFF 301

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+
Sbjct: 302 YTAATNNPKFDQME-GNPICVQIPWDKNPEALAKWTEGKTGFPWIDAIMTQLRQEGWIHH 360

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL   W  G + F   LLD D + N G W W + +      +F  + 
Sbjct: 361 LARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYC 419

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHK 464
           P   G+R DP G ++R +LP L   P++YI+ P +  +      K  + ++YP P+V+H 
Sbjct: 420 PVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEAKCIVGVDYPKPVVNHA 479

Query: 465 KACHHTLNQYYAAKKQ 480
           +A    + +     +Q
Sbjct: 480 EASRLNIERMKQTYQQ 495


>gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
 gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
          Length = 437

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 211/468 (45%), Gaps = 34/468 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLR+ DN AL  A    D +V  VF+  P  W   G   R++      L  ++
Sbjct: 3   AVMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAG-DPRRA----QLLSSLR 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              +         +     D    +     +     +     Y    VRRD+ +E  L  
Sbjct: 58  SLSAAMDGKLVVRR----GDPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALS- 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                +      + PG ILN   + Y+V+TP+ +A +++  +    +             
Sbjct: 113 -CPLVATGSPYAVAPGRILNGQGRSYQVFTPYFRAWLEHGWRQPAEAPATIEWIAARGDA 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                        A    +                  V  Y ++R+ P +  TS++S  L
Sbjct: 172 LPAAGTIEGAGEVAAREHW------------TQWLASVGQYDDERNRPDLDSTSRMSVPL 219

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G + PR     L             GA ++  EL WR+F   L+A YP     KP  P
Sbjct: 220 KYGEIHPRTMLTDLARHPGA-------GADAYRRELAWRDFCADLLARYPQAA-WKPLRP 271

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E++ +++      AW +G TG+PI+DA MRQL   G++HNR+RM+ ASFLVKDL V W
Sbjct: 272 EFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDLHVHW 331

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + G  +FM++L DGDLASN+  WQW A  G D  PY+R+FNP  QG +FDP G+++R W+
Sbjct: 332 KYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYVRRWV 391

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           PEL ++P + +H P               PIVDH +A   +L +Y A 
Sbjct: 392 PELADLPGKSVHEPWKLAAPPAGYP---APIVDHAEARLESLRRYDAI 436


>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
 gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
          Length = 526

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 127/510 (24%), Positives = 196/510 (38%), Gaps = 46/510 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHF 60
            L+W R  LR+ DN AL  +C  + + V  VF+  P        +           +  F
Sbjct: 5   SLMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRF 63

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + ++L + G            +    +    ++ ++ +L +    E     RD
Sbjct: 64  LLQSLEDLDENLRKHGSRLLVLH----GNPTTVIPELLMKWQINELCFEFDTEPYAQDRD 119

Query: 121 KLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++K      +      S     P  +I  +  Q    Y  F K   +  +        
Sbjct: 120 ADIKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPLQI 179

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHI-----LRKFCKEKVYYY 230
                    V    +P+  D  +  +D      P GE  AL       + +         
Sbjct: 180 PSPPEDLNDVHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCDFEKP 239

Query: 231 VEQRDIPAIQGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
                      T+ LSPYL              G LS R    RL   +           
Sbjct: 240 KGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQNKKHSSPPV 299

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WREF+       P+        P  ++I W  D  LL AW+ G TG+P IDA
Sbjct: 300 -SLEGQLLWREFFYTAGYGTPNFDRM-LGNPICKQIPWKDDDRLLAAWRDGQTGYPWIDA 357

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AM QL   GWMH+  R   A FL + D+ V W  G + F   L+D D A NNG W W ++
Sbjct: 358 AMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLWLSA 417

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451
           +      Y RI++P   GK++DP G +++H+LP L ++P  YI+ P +            
Sbjct: 418 SAFFHQ-YHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANCI 476

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           + ++YP PIVDH  A      +   A  Q+
Sbjct: 477 IGVDYPRPIVDHSIANKECREKMGIAYSQN 506


>gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 488

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 187/482 (38%), Gaps = 28/482 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+++VWL+ DLR+TD++ L  A    D  VI +++  P        S R   F+  SL+ 
Sbjct: 3   SINIVWLKRDLRLTDHQPLQHALEQ-DLPVILLYVFEPLLLNDPHYSERHWRFVSHSLVD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  G      +     + +    +      +  ++ +++  ++   +        
Sbjct: 62  MNQQLAPYGGKVSILR----GEILSCFKAIQSLYSIANIYSHQEIGLSCTYQRDKQVA-- 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   +  +  +P       A+                +++A +  L + A  LT  
Sbjct: 116 -------HWTQAHNIPWIESPQGAVIRGAKNRKEWDKHWDRIMRAPIAHLDLNANWLTLE 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245
                      +  +        G   A   L  F + +   Y      P+      ++L
Sbjct: 169 HLKDYTLTLPKHWLKKAKGQQTGGTTLAWKTLDDFFQRRGKEYYRSISSPSASRYACTRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ + +L   +       +    +  + L W   +        ++    
Sbjct: 229 SPYLAWGNISLRELYQQLLGHWQVKG--FRRSLVALSSRLHWHCHFIQKFESESAMEYRC 286

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +          D   L AWKQG TG P+IDA MR L+  G+++ R+R +  SFL  
Sbjct: 287 VNQAYDALLSQSCLSDRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 347 HMNMDWREGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGV 404

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ WLPEL +VPT  +  P         + + +L   Y  PI+D         ++ ++ 
Sbjct: 405 FIKQWLPELKHVPTPLLFEPWKMTQMEAVMYQIELDSCYLSPIIDLATRAKEARDRLWSW 464

Query: 478 KK 479
           +K
Sbjct: 465 RK 466


>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 473

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 147/476 (30%), Positives = 215/476 (45%), Gaps = 21/476 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWLR DLR+ D+ AL AA       VI VFI          + A     +  SL  + 
Sbjct: 7   SIVWLRRDLRLADHPALCAAL-AGGGAVIPVFIHDESVEA---LGAAPKWRLGLSLASLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  G      +      +++ L +   +     + ++R Y+   + RDK ++  L+ 
Sbjct: 63  RDLAACGSRLILRR----GAALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVKSALRE 118

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRL 184
             +  +S    V+  P ++       Y+VY+P  +A+        + A  +         
Sbjct: 119 AGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAPKVWPA 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +    +            P   +GE  A+  L  F    +  Y + R+ PA+  TS 
Sbjct: 179 SDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNFPAVDATSA 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L+ G +SPRQCW+  +            GA +WL EL+WREF  HLM   P +  G
Sbjct: 239 LSENLTYGEISPRQCWHAGQRALHGGAK----GAETWLKELVWREFAYHLMYHTPHILSG 294

Query: 305 KPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                W       + D   + AWKQG TG P +DAAMR++   G MHNR RMI AS+L K
Sbjct: 295 NWRTDWDAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  W+IG ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q  +FD  G 
Sbjct: 355 HLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLDKFDRGGA 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYA 476
           + R W+ E    P          + +    D S+ YP  IVD  +     LN Y A
Sbjct: 415 YTRRWIAEGQRTPPATALDYFKAVPRAWQLDPSMLYPGRIVDLSQGRQRALNAYEA 470


>gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
           BCW-1]
          Length = 466

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 196/476 (41%), Gaps = 21/476 (4%)

Query: 7   MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M V   +     DLR+ DN AL  A   +++ V+ +F+          +   ++ F+   
Sbjct: 1   MPVRVSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADC 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-----CLQQRVTKLFYNRQYEINEVRR 119
           L  +  +L  +G      +     ++             +    +     R+  +     
Sbjct: 60  LADLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALA 119

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-P 178
            +  E R+    +       ++    S         K +        +       R+  P
Sbjct: 120 RERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLP 179

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIP 237
            P +     +  + +P        A     P G + A     +           +R D  
Sbjct: 180 APRVVRVPSIRSAALPTAASLAPGAASLDLPAGGETAARRRLRRWAAGPLADYAERQDDL 239

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS+LSPYL  G LSP +   R  +           GA +++ +L WR+F+  ++A 
Sbjct: 240 AGDATSRLSPYLHFGCLSPVEVARRALDAGG-------PGAEAFVRQLAWRDFHLQVLAA 292

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P                W +D+  + AW  G TG P++DAAMRQL   GWM  R R++ 
Sbjct: 293 RPDAAHRDY---RPRHDRWRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRARLLA 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L +DWR G  +F++ L+DGD+A+N   WQWAA TG D+ P  RI NP IQ  R
Sbjct: 350 ASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLIQALR 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            DP+G ++R W+PEL  V    +H P      +  +L YP PIVD  +A      +
Sbjct: 409 HDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAADRFRRR 464


>gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
 gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
          Length = 537

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 182/489 (37%), Gaps = 29/489 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+++G            +  E L+S        +L+ + +             +   
Sbjct: 107 RARLAKRGQPLVVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVR--- 159

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                        +P   ++       +    +  ++ + LV       PV ++    P 
Sbjct: 160 -DWARAHEVPFTEVPSRGVVRGPHDRDEWADQWEASMDRPLVHPPDALQPVDSV---APG 215

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +       P  A        E +         + + Y     R  PA    S++S +
Sbjct: 216 PMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTECSRISVH 275

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S R+    L+    +L       A +    L   +   H  + +       P I
Sbjct: 276 LAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLEDAPRI 335

Query: 309 PWTEKIEWN-------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                I           D  L  AW  G TGFP++DA MR L   GW++ R+R +  SF 
Sbjct: 336 ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFA 395

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
             D  +DWR     +   + D     +    Q    +G   +   RI+NP  QGK  DP 
Sbjct: 396 AYDCWLDWRRFAPTYGGLMADYVPGIHYP--QVQMQSGTTGINRVRIYNPVKQGKEQDPD 453

Query: 422 GTFIRHWLPELNNVP-TQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           GTFIR W+PEL+++  T Y+HAP              +  +YP  +VDH  A HH  +  
Sbjct: 454 GTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHHAQDAI 513

Query: 475 YAAKKQSLL 483
           +  +++  +
Sbjct: 514 HELRQRPEI 522


>gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207]
 gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
          Length = 445

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 199/451 (44%), Gaps = 20/451 (4%)

Query: 41  FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
           +I      +   +      +++ +L  + KSL  K  +F         D++  L      
Sbjct: 2   YIFDQSNTQDWTLGGASRWWLHHALQSLDKSLDGKLNIF-------SGDALAILSELSAS 54

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYT 159
                +++NR YE   + RD  ++ RL+   +     +  L   P  +L      YKV+T
Sbjct: 55  MSAKAVYWNRCYEPQSIERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFT 114

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---- 215
           P+ +      V           + L        +      P    D         +    
Sbjct: 115 PYYRRGCLQKVAPRQPLPVPKTLDLVKADNSLTVEDLSLLPAIDWDKKLHGDWDISEDGA 174

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
              L  F    +  Y E R+ P  +  S+LSPY   G +S               LI  +
Sbjct: 175 KDRLDDFVFNGIQDYREGRNFPNKKNVSRLSPYFHFGQMSVNT--AWYAANDAAALIDNE 232

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           S   ++L+EL WREF  +L+  +P +        +            L+AW++G TG+P+
Sbjct: 233 SNLDTFLSELGWREFSYYLLYHFPKLPTDNLQQRFNVFPWAKNTDAELKAWQKGKTGYPL 292

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   G+MHNR+RM+  SF+VK+LL+ W  GE +F   L+D DLA+N+  WQW 
Sbjct: 293 VDAGMRELYGTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWI 352

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ 449
           A  G D+ P+FRIFNP  Q ++FD QG +IR  +PEL  +P +YIHAP            
Sbjct: 353 AGCGADAAPFFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAAG 412

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++  +YP PI+D K++    L  +   K  
Sbjct: 413 VEIGTDYPAPIIDIKESRERALAAFKMTKND 443


>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
          Length = 558

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    VF+  P       +   +  F+   L  +  
Sbjct: 57  VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 115

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 116 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 171

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + ++ ++   +   L V +  +    T
Sbjct: 172 GISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIGSAYT 231

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 232 PLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 291

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 292 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAM--PPLSLHGQLLWREFFYCA 349

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 350 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 408

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 409 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 467

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +         K  +   Y LP+V+H K+ 
Sbjct: 468 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIVGKEYSLPMVNHSKSS 527

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 528 RINIERMKQVYQQ 540


>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
 gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
          Length = 474

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 231/481 (48%), Gaps = 24/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR+ DN AL AA       +I ++I  P   +   + A     +   L +  K
Sbjct: 8   IWWIRRDLRLRDNPALTAALETG-GPIIPLYIHDP---QDEALGAAPKFRLGLGLERFAK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +     D++E L     +     + ++R Y+   ++RD  ++++L+  
Sbjct: 64  TLEGHGSRLTLRK----GDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAA 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  KS    ++  P ++      MYKVYTPF KA+       L+ A        A   T
Sbjct: 120 DITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWPAT 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   NI        + +     +G+  AL  L +F +E+V  Y   RD P+   TS+L
Sbjct: 180 DELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATSEL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SP + W+   +   D       GA  +L E++WREF  HLM   P +    
Sbjct: 240 SENLAWGEISPHRMWHLGAQAMRDGK----QGAEHFLKEVVWREFAYHLMYHSPHILTRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W      +     L  W+QG TG+  +DAAMR+L   G MHNR RMI ASFL K L
Sbjct: 296 WREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G ++
Sbjct: 356 MIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGRYV 415

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R+WL E  + P Q     +   P SW      +     PI+D K+     L  Y+ ++ +
Sbjct: 416 RNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRA--RPIIDLKRGRERALEAYHDSRDK 473

Query: 481 S 481
           S
Sbjct: 474 S 474


>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion And
           Cofactor F0
          Length = 543

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A +  F+ 
Sbjct: 29  STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 89  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                        + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+HN  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 383 EGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522


>gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
          Length = 495

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 182/481 (37%), Gaps = 18/481 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +VWL+ DLR+ D++ L  A  +S   V   +   P        S R   F+  SL 
Sbjct: 1   MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L Q        Q     D++        +  ++ ++ + +  ++           
Sbjct: 60  DMNRQLRQNRFRVLVFQS----DALPLFKLIHAESPISAVYSHEETGVDSTFGRDRSIAS 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             +       +           +      +     +    Q +  A    +  P     G
Sbjct: 116 WLNNEGIAWHESPTNGVQRGRTDRKGWNRRWSEVMKMPQDQPVWDA----VCAPPPLAGG 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
            +  + +    +   + +  +   GE  A  +L  F  E+  +Y      P       S+
Sbjct: 172 ALGEALLRSPPEQWLRPVQDLQQGGETAATQVLDSFLTERGAHYERHISKPDKSQLHCSR 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G +S RQ    L+          +    ++ + L W   +        S+   
Sbjct: 232 LSPHLAWGNISIRQVSQALEARRPYAG--WERSMNAFESRLHWHCHFIQKFEMECSME-W 288

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +        +E + D     AW++G TG+P+IDAAMR L   G+++ R R +  SF    
Sbjct: 289 RDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRCRAMLVSFFCHL 348

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L   W     +  S  LD +   +    Q  A  G   +   RI+NP  Q    DP+G F
Sbjct: 349 LWQPWHDAAVHLASLFLDFEPGIHYPQLQMQA--GVTGINTVRIYNPIKQAIDHDPKGHF 406

Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           IR W+PEL  +P   IH P +   +++  LS +YP PI+D   +        +  +  + 
Sbjct: 407 IRQWVPELRTMPEHLIHQPWNANPMERMLLSCDYPEPIIDCTSSYRRAREILWDLQHSNT 466

Query: 483 L 483
           +
Sbjct: 467 V 467


>gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
 gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
          Length = 493

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/486 (22%), Positives = 193/486 (39%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A       V+ ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L   G          FDD++    S   Q ++  +F +R+  +N            
Sbjct: 62  MDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAA- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               + +   D      G+++  A+        +   +  ++   +L++  + ++     
Sbjct: 117 ---WLYEQNIDWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQTDLLHSLDAEAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
               + P  +    +    M   G + A   L  F   +   Y      P    T+   L
Sbjct: 174 GCSFSPPSSWLSKCKG---MQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREVYQYLLKHWQVAG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYC 288

Query: 306 PFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   I+     D   L AWK G+TG P+IDA MR L+  G+++ R+R +  SFL  
Sbjct: 289 VNRAYEPLIKQSSTFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR+G  +     LD +   +   +Q  A  G       RI+NP  Q +  DP GT
Sbjct: 349 HMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPIKQAQEHDPNGT 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P +                Y  PI+   KA      + +  
Sbjct: 407 FIYKWVPELQMVPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDKAAKAARERLWTW 466

Query: 478 KKQSLL 483
           +K++ +
Sbjct: 467 RKRADV 472


>gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor
           A3(2)]
          Length = 458

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 218/476 (45%), Gaps = 25/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+           +  +   +   L 
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVDAAGFAAPNRLALLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            D +E + +   +    ++        +  RR++LL   
Sbjct: 60  DLDSGLRDRGGRLVVRS----GDLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115

Query: 127 LQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L      +      + +L PGS+   +   + V+TP+ +   +  V+  L        R+
Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPL----AAPRRV 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P    + P         + P  P  GE++A   L  + +  +  Y +  D  A   TS
Sbjct: 172 RVPDGVGSEPLPARGDLTGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPDLHLGALSPVELVHRARRAGG-------PGAEAFVRQLAWRDFHHQVLAARPHASA 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                                AW+ G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR+G  +F+  L+DGD+A+N   WQWAA TG D+ P+ R+ NPT Q +RFDP GT
Sbjct: 345 TLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRFDPGGT 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +  + +H P             YP PIVD  +     L+++  A+
Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRAR 455


>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
          Length = 579

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 201/498 (40%), Gaps = 29/498 (5%)

Query: 2   KATTAMSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59
           + + AMS   +   R  LR+ DN +L  A  +S + +  V++      +    + A +  
Sbjct: 17  RKSIAMSHRTIHLFRKGLRLHDNPSLLGALASS-STLYPVYVLDRVFLQGAMHMGALRWR 75

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  +   L   G             +   L     Q  +T++ Y+ + E    R 
Sbjct: 76  FLLQSLEDLDTRLRAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRM 131

Query: 120 DKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           DK ++   Q   +      S        I+        +       ++  L + +  +  
Sbjct: 132 DKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARD 191

Query: 179 VPAIRLTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKV 227
           V        VTP ++ R +  P           + ++P GE +A        +       
Sbjct: 192 VSIEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVAN 251

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           +          +  T+ LSPYLS+G LS R  ++RL   +            S   +++W
Sbjct: 252 FSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPV-SLQGQVLW 310

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+  + +  P+    +       +I+W  D   L+ W+   TGFP IDA M QL   G
Sbjct: 311 REFFYTVASATPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEG 369

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      Y 
Sbjct: 370 WIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YT 428

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           RIF P   G+R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PI
Sbjct: 429 RIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPI 488

Query: 461 VDHKKACHHTLNQYYAAK 478
           V H +A    L      +
Sbjct: 489 VSHIEASQRNLALMRQVR 506


>gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
          Length = 453

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 209/461 (45%), Gaps = 22/461 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++   +DLR+ D  AL AA   +D +V+ +F+      R    +  +  F+  SL 
Sbjct: 1   MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L ++G            D  E +     +     +           RR+  L   
Sbjct: 60  ALDEELRERGGRLVLRT----GDVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115

Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L      +        ++PPG++       + V+TP+ +   +    A  R L  P   L
Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRWAE---VAPRRVLAAP-RSL 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T P  P +              +   GE+     LR++    +  Y E  D      TS+
Sbjct: 172 TVPELPGHPLPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPGDATSR 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LS  +   R +        +   GA +++ +L WR+F+  ++A  P     
Sbjct: 232 LSPHLHFGTLSAAELVQRAR-------GRGGPGAQAFVRQLAWRDFHHQVLAARPDAAHA 284

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                      W  D   + AWK+G TG P++DA MRQL   GWMHNR R++TAS+L K 
Sbjct: 285 DY---RPRGDRWRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYLTKT 341

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWR+G  +F+  L+DGD+A N   WQW A TG D+ P  R+ +P  Q +RFDP G +
Sbjct: 342 LYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPHGAY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           +R W+PEL ++  + IH+P +        L YP P++D  +
Sbjct: 401 VRRWVPELADLGDREIHSPETLDPARRARLGYPDPLIDPAE 441


>gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
 gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
          Length = 457

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 145/482 (30%), Positives = 212/482 (43%), Gaps = 45/482 (9%)

Query: 2   KATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           K    M   V + W R D+R+ DN  LY A  +    V+ +FI       +      +  
Sbjct: 18  KKQFKMKNKVRVFWFRRDMRLEDNVGLYHAL-SGVFSVVPLFIFDKNILNELQEDDARIS 76

Query: 60  FIYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           FI+  L +++  L    G     +  +      E          V  ++ NR YE    +
Sbjct: 77  FIFEQLQKMRSHLQDHYGSSIATYHST----PEEAFHELLKDFEVEAVYTNRDYEPYAHQ 132

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RD  +   L ++ I        ++   + +        +         +   +       
Sbjct: 133 RDSKINTLLANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTF 192

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                L      S +P         +     +             K+ + +Y + R+IP+
Sbjct: 193 PSEDHLDNTYKNSMLPDVSLSDMGFVKSSIQV-------PDYNITKDLLEHYEDTRNIPS 245

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I+GTS+LSPYL  G++  R+          +          ++LNELIWREFY+ ++  +
Sbjct: 246 IEGTSRLSPYLRFGLIGYRKLIQAALSVKNE----------TFLNELIWREFYKAILYNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F P  ++IEW  D +  + WK+G TG+PI+DA MRQLN  GWMHNRLRM+  
Sbjct: 296 P-KTQNSAFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVG 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD +++SN GGWQW A +G D+ PYFRIFNP  Q  RF
Sbjct: 355 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D    +I  W+PELN                   +  YP P+VDHK A    L  Y  A 
Sbjct: 415 DKDKKYIMKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAV 455

Query: 479 KQ 480
           K 
Sbjct: 456 KS 457


>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 477

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 221/480 (46%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66
           L W R DLR+ DN  + AA   S A V  V++  P           ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFLLESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G      +     D ++ L     +     + +NR  E     RD+ + KR
Sbjct: 66  ELQQRWRAAGSRLLILE----GDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDRQVAKR 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181
           LQ        D   LL    +L   A   Y+VY PF +     +      ++  P+    
Sbjct: 122 LQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAPSGLVD 181

Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L     P    R               GE  AL  L  F    +  Y   R+ P +
Sbjct: 182 LDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAALEQLTCFADGALSAYEPDRNFPNV 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            GTS LS  LS+G LSPRQ W   ++        + ++    W  EL WREFY+  +  +
Sbjct: 242 VGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G P+     +  W  +     +W+ G TG PIIDAAMRQLN  GWMHNR RMI A
Sbjct: 302 PELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNRCRMIVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +F
Sbjct: 361 SFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G +IR WLPEL +V T+ +    +          YP P+++HK       + Y   +
Sbjct: 420 DADGDYIRRWLPELRHVNTKDL---LTGEIGGLERRGYPEPLINHKNQQALFKSLYATIR 476


>gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
 gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
          Length = 496

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 190/483 (39%), Gaps = 25/483 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR+ DN+A+  A       V+ +++           + R  +FI  S+ ++
Sbjct: 8   INVVWFKRDLRLQDNEAIQNALLT-KKPVLFLYVFENSLLEDPHYNIRHWNFIKESIQEL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L+           +   + I   +      ++  +F +++  + +            
Sbjct: 67  NDDLTAFNTKIL----TVTSEVITVFNQLQNFYKIDTVFSHQETGLLKTYNRDKDF---- 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R    +  + V      +L   L  +     +   + +  ++ D ++  + +      +
Sbjct: 119 ARYCRNNSINWVENNNNGVLRGLLNRHDWLEKWENFMYKPQIKNDFKNRNLISEDEITTI 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
               I    + P +        G +        F +E+   Y+     P  + +  S+LS
Sbjct: 179 ENHFIVTDLETPKE--AKFQKGGSKMGWRYANSFFEERYKNYMNHISKPALSRKSCSRLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++ G LS RQ + +      D   +       +++ L W+  +               
Sbjct: 237 PYIAWGNLSIRQVYQKAIMLKNDENKRQLGA---FVSRLRWQAHFIQKFE-MEHTMEEAS 292

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 K++ N  +   +AW++G TGFPIIDA+MR L+  G+++ R+R + ASF    L 
Sbjct: 293 INKGYHKLKKNISTKYQKAWREGKTGFPIIDASMRCLSETGYLNFRMRSMLASFFTHILW 352

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+    +     LD +   +    Q    +G   +   R++NP       D    FI+
Sbjct: 353 QPWQDSSHHLSQLFLDFEPGIHFP--QLNMQSGETGINEIRVYNPIKNSLEHDEDANFIK 410

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL N+PT +IH P+     ++      L ++YP PIVD K A        +  KK 
Sbjct: 411 EWVPELANLPTAFIHQPYLMTPLDEQFNNFKLGVDYPKPIVDFKSARKRATQTLWDMKKD 470

Query: 481 SLL 483
             +
Sbjct: 471 PDV 473


>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
 gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
          Length = 556

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 118/501 (23%), Positives = 195/501 (38%), Gaps = 38/501 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LRI DN AL  A        +   +  +F+  P   +   +   +  F+  +L
Sbjct: 8   VHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQTL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L          +     + +E          V+ L Y    E   V+RD  +E+
Sbjct: 68  ANLDENLRSINSRLYVVR----GNPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEE 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--- 182
           + +   +    + S  +     +          T  R A + +  +          +   
Sbjct: 124 QARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKLPAK 183

Query: 183 -----------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE----QNALHILRKFCKEKV 227
                      +      P  +              FP GE    +    IL +      
Sbjct: 184 ETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAWVCK 243

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           +             T+ LSPYL  G LS R  ++R+ E       K      S + +++W
Sbjct: 244 FEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETI--KGQKHSQPPVSLIGQVMW 301

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFY  + A  P+            +I+W+ +   L+AW  G TG+P IDA MRQL   G
Sbjct: 302 REFYYCVAAATPNYDKM-VGNGICTQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQLRQEG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YF
Sbjct: 361 WIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQ-YF 419

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           R+++P   GK+ DP+G FI+ ++PEL   P   I+ P     +        +  +YP+ I
Sbjct: 420 RVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKDYPMRI 479

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V H+      + +  AA K++
Sbjct: 480 VVHEDISKVNIQRMSAAYKRN 500


>gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 463

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 216/463 (46%), Gaps = 33/463 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R D RI DN AL  A        + + I        H   A    +++ ++  + +
Sbjct: 10  IVWFREDFRIADNMALLEA-EKRGQPTLCIVILD----DAHLPGAAARWWLHGAIRSLDE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      +   L     +     +F+NR+Y+      D  ++  L+ R
Sbjct: 65  TLRGMGGALHVFR----GAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +SF  ++L  P S+   +   YK++T F +A             P   +    P  
Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPM 180

Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           P ++                   +  M+  GE+ A   L  F +     Y   RD P  +
Sbjct: 181 PDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +SP Q W+    +              +L EL WR+F   L+ F P 
Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKA---------CPDKFLMELGWRDFAWSLLFFNPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+RM+ ASF
Sbjct: 292 LATRN-LRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q ++FDP
Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            G +IR W+PEL ++    IHAP     ++  +  YP PIVDH
Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449


>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 472

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 228/482 (47%), Gaps = 27/482 (5%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    LVW R DLR++D+ AL AA  + +  VI VFI   +      + A     +   
Sbjct: 1   MSTSPVLVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHDDQV---ETLGAAPRWRLGLG 56

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  + ++L          +      ++E L +  L+     +F++R Y+   V RD  ++
Sbjct: 57  IGHLSETLEGLNSRLILRRGP----ALETLRTLILETGAGAVFWSRLYDPAAVERDTEVK 112

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPV 179
             L+   I  +SF   ++  P ++       YKVYTPF   +    V A      R    
Sbjct: 113 AALKQDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAP 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A   +  ++  N+    D     + P   +GE  A   L  F  + V  Y   RD PAI
Sbjct: 173 AAWPGSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAI 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LS  L++G +SP QCW        +       GA ++L EL+WREF  HLM   P
Sbjct: 233 DGTSGLSENLALGEISPHQCWYAGLRAREEEK----PGAETFLKELVWREFAYHLMHHTP 288

Query: 300 SVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +  G     W       ++ +  ++ W+QG TG   +DAAMR++   G MHNR RMI A
Sbjct: 289 RILTGNWKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K LL DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +F
Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +++ W+ E    PTQ    Y  A P +W    D   +YP P+V   +     L  
Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466

Query: 474 YY 475
           Y 
Sbjct: 467 YE 468


>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
 gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
          Length = 447

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 193/449 (42%), Gaps = 22/449 (4%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              DLR+ DN  L AA    +  V  +F+      R    +  +  F+  SL  + +SL 
Sbjct: 7   FTRDLRVHDNPMLTAAALAGEHTV-PLFVLDAAMARSGFATGARERFLAESLADLDRSLR 65

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
           + G            D +E +     +     +           RR+  L   L  R   
Sbjct: 66  ELGGRLVVR----AGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAERGRT 121

Query: 134 KSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
               D   V++ PG +       Y V+  + +       +      P   +RL      +
Sbjct: 122 LHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRR--VIAPPARLRLPAVDPGA 179

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             P       ++    F  GE        ++ +E V  Y E+RD  A   TS+LSPYL +
Sbjct: 180 LPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADATSRLSPYLHL 239

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G LS  +                   A  ++ +L WR+F+  L+A  P+           
Sbjct: 240 GCLSALEL---------ATQAGTGDAARDFVRQLAWRDFFHQLLAARPAAAHEDYRDAHR 290

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              +         AW+ G+TG PI+DA MRQL T GW+ NR RMITASFL K L +DWR 
Sbjct: 291 TWRDDPAALD---AWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASFLTKTLGLDWRA 347

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G  ++   LLD D+A+N+  WQW A TG D+ P  R+ NP  Q +RFDP G ++R  +PE
Sbjct: 348 GAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDPDGVYVRRHVPE 406

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           L  +P + +H P    D+   +L+YP P+
Sbjct: 407 LAGLPGRQVHRPWRLPDRERAALDYPEPL 435


>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
 gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
          Length = 464

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 137/478 (28%), Positives = 216/478 (45%), Gaps = 24/478 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ D  AL+AA       VI V++   E+   H        +++ SL  
Sbjct: 3   SPQIVWLRRDLRVADQPALHAAAQA--GPVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KS   +       +     D+ + L     +     +   R YE      +  L   L
Sbjct: 61  LCKSFGNRRSQIVLRK----GDAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +       +D + LLPPGS+   +   YK+YTPF K++++ +   D+         ++ P
Sbjct: 117 EEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLG---EPETISSP 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY-------VEQRDIPAIQ 240
                     D+      P +  G ++          E++ ++        E R++P+  
Sbjct: 174 DNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLEWWADEVADYDEGRNLPSND 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +SP Q W+ LK++  D              +       +       S
Sbjct: 234 ITSRLSPHLHWGEISPAQVWHALKDKRSDG--WKTFAKEIIWRDYAQNVIDQFPNYPRES 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    W      +     L+ W++G TG+PI+DA MRQL   GW+HNR+RMI ASF
Sbjct: 292 YRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIHNRVRMICASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE+++   L+D D  +N   WQW + TG DS  + RI  P  Q ++FD 
Sbjct: 352 LVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMAPLSQSEKFDA 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              +IR ++PEL  +    IH P      +D   +YP+ ++ HK+A    L  Y A+K
Sbjct: 412 -AAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERALEAYRASK 463


>gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 502

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 189/491 (38%), Gaps = 27/491 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+      V++VW + DLR TDN+AL+ A H+S   ++ +++  P          R   F
Sbjct: 1   MEKKV---VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRF 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +Y SLL +Q  L        +      ++S            V  +F +++         
Sbjct: 57  VYESLLDMQLKLDLVASKIYFFH----NESKIIFSELIKIFNVQTIFSHQEIGNKITFDR 112

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +  +   ++      +  +      + +      K        +++   +         
Sbjct: 113 DIEMQAFFNKNNIIWKEFQLHGVIRKLKSRQNWDKKWED-----VMRASPRIIDLKDLKI 167

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
            I                            GE  A   L  F K++   Y +    P  +
Sbjct: 168 EILSDSFYQEFKGEILNPEITTHNKNFQQGGENFAWRYLDSFVKKRYVNYSKHISKPLLS 227

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +G S+LSPYL+ G +S R  +    + +     K      ++++ L W   +       
Sbjct: 228 RKGCSRLSPYLTYGNISMRAIYQYTNQHYETSKNKR--AILNFVSRLHWHCHFMQKFEDE 285

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            ++          + +   K+   ++AW++G TG PI+DA MR L T G+++ R+R +  
Sbjct: 286 CTMEFENA-NRAYDVLIKPKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFRMRAMVV 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF   +L  DWR    +   Q LD +   +    Q    +G   +   RI+NP    +  
Sbjct: 345 SFFTFNLWQDWREL-HFLARQFLDYEPGIHYPQIQ--MQSGTTGINTIRIYNPIKNSEEH 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472
           DP+G FI+ WLPEL  +P   +H P    D         +  +YP PIV+  +   +  +
Sbjct: 402 DPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTPIVNIDQTRKYASD 461

Query: 473 QYYAAKKQSLL 483
             ++ +K+  +
Sbjct: 462 IVWSFRKKDEV 472


>gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 516

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 168/490 (34%), Gaps = 24/490 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+ D+  L  A      KV+ +++  P  W Q   +++   FI   L 
Sbjct: 1   MSYTIVWFKRDLRVHDHAPLVHAARR--GKVLCLYVIEPSLWAQPDAASQHYLFIQECLH 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L   G   Q        +  E           + L  + +              R
Sbjct: 59  DLAEQLRACGARLQV----AVGEVTEVFGRLHAAAAFSHLVSHEETGNGHTFARDKAVAR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                     +         +    +   +         +       L  + +P   +  
Sbjct: 115 WCLDHDVTWREWPQHGVVRRLPTRDVWHDRWAEHMYAPCMPAPGVGALSDVMLPWPAMDW 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   +        P +           + +     F + + Y       + A    S+LS
Sbjct: 175 PGCEALGLDTHAPPRRQRGGRA---RGSEVLRDFLFERSRNYRGGISSPLTAPSACSRLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299
           PYL+ G L  R+     ++  + L           + G  ++++ L W   +   +   P
Sbjct: 232 PYLAYGCLGMREVVQATEQRVLQLRASTDEDAVWQRKGLAAFVSRLHWHCHFIQKLESEP 291

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++        +    E   ++    A   G TG+P++DA +  L   GW++ R+R +  S
Sbjct: 292 AIEFRNLHRGYDGLRESAWNADHFAALVAGRTGWPMVDACVAMLRETGWINFRMRAMLVS 351

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
                L + WR    +   Q +D +   +    Q     G   +   R++NP  Q +  D
Sbjct: 352 VASYPLWLHWRPVGVWLARQFVDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQDQD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P G F+R WLP L  VP  ++  P              +  + P+P+VD + A      +
Sbjct: 410 PHGRFVRRWLPALRRVPDAWLLQPWRMPPDVQARCGVRVGEDIPVPLVDLEAATRQAKMR 469

Query: 474 YYAAKKQSLL 483
            +A + +  +
Sbjct: 470 VHALRARPEV 479


>gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 493

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 186/486 (38%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD++ L  A  +S+   + ++I  P        SAR   FI+ SL  
Sbjct: 3   TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++LS  G             +I+ L +   Q  +  +F +++  ++            
Sbjct: 62  MNETLSALGHQVSV----MSGSTIDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSA- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +            G+++  A         +   +   +   DL S  + A+     
Sbjct: 117 ---WLQAHSIPWHEFEHGAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDAKAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                 P       + I  M   G   A   +  F + +   Y      P    T+   L
Sbjct: 174 GCLFTPPPS---WLEKIKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTASRTACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREVYQYLLQHWQVAG--FRRSLIALSSRLHWHCHFMQKFESECEMEFRY 288

Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   ++           AWK G TG P+IDA MR L+  G+++ R+R +  SFL  
Sbjct: 289 VNKAYDPLLQQASVRDAALLDAWKSGTTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G       RI+NPT Q +  D  G 
Sbjct: 349 HMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDANGE 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VPT  +  P             +    Y  P V+ + +      + +A 
Sbjct: 407 FIHKWIPELAMVPTPLLFEPWKMTAMETVMYQLEPDSRYLAPFVNVEVSAKAARERLWAW 466

Query: 478 KKQSLL 483
           +K++ +
Sbjct: 467 RKRTEV 472


>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion
          Length = 543

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A +  F+ 
Sbjct: 29  STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 89  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                        + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  RM  A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 383 EGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522


>gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
 gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
          Length = 498

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 101/477 (21%), Positives = 191/477 (40%), Gaps = 31/477 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+ +
Sbjct: 4   INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L++ G            + I   D+   + ++  ++ +++       +     K   
Sbjct: 62  RNALAEIGQPLIIRT----GNVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWA 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +          L+      K      K L++  ++ +          +    
Sbjct: 118 FSKNIIWKEFLQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLRIN---------SINFNT 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
                   F +  +        G +  L  ++ F   K+  Y +    P       ++LS
Sbjct: 169 GEIPSDEIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTRLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY+  G +S ++ +           I   + +    + L W   +   +   P +   + 
Sbjct: 229 PYICWGCISLKEIFQ-------KANISKNNNSRMLKSRLTWHCHFIQKLESEPELEFREY 281

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
              +    E   ++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF   +L 
Sbjct: 282 HPFFKNIREK--NNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSFASYNLW 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DPQG FI+
Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPQGKFIK 397

Query: 427 HWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            WLPEL ++   +IH P        +    +NY  PI+D   +  +   +     K+
Sbjct: 398 KWLPELKDLSLNFIHEPWLLSRFNKEEYEQINYIRPIIDIPNSTKNAKKKIQEITKK 454


>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion
 gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
           Ds Dna
 gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
           Stranded Dna Containing A T(6-4)c Photolesion
 gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion And F0 Cofactor
 gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
 gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
          Length = 543

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 198/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A +  F+ 
Sbjct: 29  STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   V RD  
Sbjct: 89  QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                        + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 383 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522


>gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 187/483 (38%), Gaps = 26/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD+  L  A  + +  V+ ++I  P        S R   F++ S+  
Sbjct: 3   TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+Q            F ++ + L +   Q  +  +F +++  +N            
Sbjct: 62  MNAQLAQHNQKVSV----MFGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSA- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +            G+++  A   +     +   +   + + +L S  +  + +   
Sbjct: 117 ---WLQAQDIPWHEFEHGAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVEAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                 P       + +  +   G   A   L  F + +   Y      P    T+   L
Sbjct: 174 GFTFTPPPS---WLEKVKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTASRTACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +   +   +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREVYQYLLQHWQ--VTGFRRSLIALSSRLHWHCHFMQKFESECEMEFRC 288

Query: 306 PFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +    ++  ++  AWK G TG P++DA MR L+  G+++ R+R +  SFL  
Sbjct: 289 VNQAYDPLLRQASNNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFRMRAMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G       RI+NPT Q +  D  G 
Sbjct: 349 HMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDTDGE 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VPT  +  P             +    Y  P +D + +      + +A 
Sbjct: 407 FIHKWIPELAKVPTPLLFEPWKMTAMEVVMYQLEPDSKYLAPTIDVEASAKAARERLWAW 466

Query: 478 KKQ 480
           +K+
Sbjct: 467 RKR 469


>gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum]
          Length = 698

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 221/503 (43%), Gaps = 30/503 (5%)

Query: 1   MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           M A+ +MS         +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +  
Sbjct: 1   MSASPSMSGGAGERTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYP 59

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 ++  SL  +  SL + G      + S   D++  L         T LF+N  Y+
Sbjct: 60  GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  +++ L    I     +S L   P  +L+     + ++TPF    +  +   
Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPP 177

Query: 173 -----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
                  R       R                    +   +  G QNA      F    +
Sbjct: 178 APMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPL 237

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLN 283
             Y   R       TS LSPYL  G LS R+ +++++ +      +     + G   +L 
Sbjct: 238 IDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFLR 297

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L
Sbjct: 298 SIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 356

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D  
Sbjct: 357 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 416

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYP 457
              RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYP
Sbjct: 417 ELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP 476

Query: 458 LPIVDHKKACHH---TLNQYYAA 477
           LPIV+  +A       L++ +  
Sbjct: 477 LPIVELDEAKSRLQDALSEMWEL 499


>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
 gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
          Length = 497

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 147/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 12  LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 70  LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 125

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I     ++ L   PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 185

Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P   +                     +   +  GE  A   LR F   ++  Y
Sbjct: 186 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 245

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF
Sbjct: 246 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 305 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 363

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 364 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 423

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV + 
Sbjct: 424 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 483

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 484 AARRRALDAFGAIR 497


>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
 gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
          Length = 529

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 123/491 (25%), Positives = 189/491 (38%), Gaps = 29/491 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R  LR+ DN AL AA  +S+  V  V+I           I A + HF+  SL  ++
Sbjct: 6   IHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLR 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL Q G      Q     +    +  +  +  +T++  + + E      +  +    + 
Sbjct: 65  SSLRQLGSCLLVIQ----GEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGEE 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                             IL        +       ++  L   ++      A       
Sbjct: 121 LGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDFQRCS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQRDI 236
            P              D   P             G Q     L        +   +    
Sbjct: 181 PPELGLAECYGVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADQGWVASFTKPKTVPN 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             +  T+ LSPY S G LS R  + RL   +            S   +L+WREF+ + +A
Sbjct: 241 SLLPSTTGLSPYFSTGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVA 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                       P   +I W +D+  L  WK   TGFP IDA M QL   GW+H+  R  
Sbjct: 299 SATPNFTKMAGNPICLQIRWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHA 358

Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   G
Sbjct: 359 AACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           +R DP+G +IR +LP L N P++YI+ P +  ++        +  +YP P+VDHK+A  H
Sbjct: 418 RRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASDH 477

Query: 470 TLNQYYAAKKQ 480
            L     A+++
Sbjct: 478 NLQLMKQAREE 488


>gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
 gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
          Length = 497

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 187/482 (38%), Gaps = 26/482 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD+  L  A  +     I ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHAPLQHAL-SDQYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G             +++  ++   +  +  LF +++  +N            
Sbjct: 62  MNQSLKAYGHQVSILH----GSAVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELSTW 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    + +         +         +  R  + ++L  A+       ++    P
Sbjct: 118 FTEHNIPWQEFAQGAVVRGSKDRVGWDKHWNSVMRAPIEESLFTAE-------SLHTLDP 170

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
                           ++ +   G   A   L  F   +   Y      P       ++L
Sbjct: 171 EELELAMEPPQAWLTKVNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRHACTRL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L   +       +    +  + L W   +        ++    
Sbjct: 231 SPYLAWGNISLREVYQHLLGHWQVAG--FRRSLIALSSRLHWHCHFMQKFESECAMEYRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    + E  KD   LQAWK G TG P++DA MR L+  G+++ R+R +  SFL  
Sbjct: 289 INHAYEALLQKETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMRSMLVSFLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q +  D  G 
Sbjct: 349 HMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQA--GVTGINTIRIYNPTKQAQEHDSDGD 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLNYP--LPIVDHKKACHHTLNQYYAA 477
           FIR W+PEL+++PT  +  P           +L  ++P   P+VD + +      + ++ 
Sbjct: 407 FIRKWVPELSDIPTPLLFEPWKMTPMEVMMHELEPDFPYLNPVVDLEVSAKEARVRLWSW 466

Query: 478 KK 479
           +K
Sbjct: 467 RK 468


>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 484

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 144/494 (29%), Positives = 220/494 (44%), Gaps = 30/494 (6%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M+   ++W R+DLR+ D++    A  NS + V+ V+I   EQ  Q  + A    ++  SL
Sbjct: 1   MTQTTILWFRSDLRLQDHEG-VEATLNSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL  +G      +      ++  L     Q   T+L  +R +E      D  L K
Sbjct: 59  RSLDQSLRARGARLIVLK----GSALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSK 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L   +  + F+  +L  P  I       YKV+TPF +AL+            +      
Sbjct: 115 ALG--IPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPWPA 172

Query: 186 GPVTPSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
               P ++               + +     ++  GE  A   L  F +  +  Y   RD
Sbjct: 173 PAEWPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRD 232

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P +  TS+LSP+L  G +SP +      E               +  EL WR+F  +++
Sbjct: 233 RPDLDITSRLSPHLRFGEISPHRVL-HEAEAHAAAHPALSDDLEKFRAELAWRDFSYNIL 291

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +     F    + + W  D   L+AW++G TG+ ++DA MRQL   G+MHNR+RM
Sbjct: 292 QLQPELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMHNRVRM 350

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFRIFNP  Q 
Sbjct: 351 VCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFNPLTQA 410

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---------SLNYPLPIVDHKKA 466
           ++FDP+G + R ++            A H   +++           S   P  IVDH  A
Sbjct: 411 EKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIVDHAVA 470

Query: 467 CHHTLNQYYAAKKQ 480
               L+ Y   KK 
Sbjct: 471 RQRALDAYAQMKKD 484


>gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 178/481 (37%), Gaps = 22/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA   S    + ++   P       +S    +FIY SLL++
Sbjct: 4   INVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLEM 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK L            S    S+E         ++  +F ++++      +         
Sbjct: 63  QKKLEPFNRPLYILHAS----SVEAFAYIQKNYQIKNIFAHQEHGTTRTWKRDRQIIDFC 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +   + +      I        K    +      N+++           +   P 
Sbjct: 119 ----WQEKIELLEAEHSGIKRGIQNRDKWDKAWFSWHSANIIRNSYSKGHFTFDQDLFPA 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                     Y     +P       +         + K Y+    +   + +   +LSPY
Sbjct: 175 VFYFKYHSKPYSKNLQNPGE--DTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRLSPY 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S RQ +  +KE       K        L  + WR  +        S        
Sbjct: 233 LAWGNISSRQVYQFIKESPKYKDNKRAYSG--LLTRIKWRSHFIQKFEVECSYE-YLYLN 289

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E +  N ++  ++AW++G TG+P++DA MR L+  GW++ R+R +  SF    L  D
Sbjct: 290 KGYELLSLNFNAEHIRAWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQD 349

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G  +     LD +   +   +Q  A  G   +   RI+NP  Q    DP G FIR W
Sbjct: 350 WRDGVYHLAKLFLDYEPGIHFPQFQMQA--GTTGINTVRIYNPIKQSMDNDPHGEFIRQW 407

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQSL 482
           +PEL  +    IH P                  YP PI+D K+      ++ +  +   L
Sbjct: 408 VPELKELNNNEIHEPWKIELMEAKMKGYANLHLYPDPIIDIKETYRLARDRIWGLRTNPL 467

Query: 483 L 483
           +
Sbjct: 468 V 468


>gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 498

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 191/477 (40%), Gaps = 31/477 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+ +
Sbjct: 4   INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLIDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L++ G            + I   D    + ++  L+ +++       +     +   
Sbjct: 62  RNALAEIGQPLIIRT----GNVINIFDEISSKFKIKGLYSHQETGDWLTYKRDQKVREWA 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +          L+      K      K L++  ++ +          +   +
Sbjct: 118 LSKNIIWKEFLQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLRIN---------SINLNI 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
                 + F +  +        G +  L  ++ F   K+  Y +    P       ++LS
Sbjct: 169 GEIPSDKIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTRLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY+  G +S ++ +           I   + +    + L W   +   +   P +   + 
Sbjct: 229 PYICWGCISLKEIF-------KRANISKNNNSRMLKSRLTWHCHFIQKLESEPELEFREY 281

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
              +    E   ++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF   +L 
Sbjct: 282 HPFFKNIREK--NNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DPQG FI+
Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPQGKFIK 397

Query: 427 HWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL ++   +IH P        +    +NY  PI+D   +      +     K+
Sbjct: 398 KWIPELKDISLNFIHEPWLLSIFNQEEYEKINYIRPIIDIPISTRTAKKKIQEITKK 454


>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
 gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
          Length = 472

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 222/482 (46%), Gaps = 27/482 (5%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLR+ D++AL AAC ++D  VI VFI          + A     +  S
Sbjct: 1   MSKSPILMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYDEL---TESMGAAPKMRLGLS 56

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +  SL++KG      +      +++ L           ++++R Y+ +   RD  ++
Sbjct: 57  VADLAASLNEKGSKLILRR----GKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVK 112

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPV 179
             L+   I  +SF   VL  P ++       YKVYTP  K++  N V A           
Sbjct: 113 AALKDDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPAALPTPGTIPVP 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +   +  +    +          +     +GE  A H L  F    V  YV+ RD+PA+
Sbjct: 173 DSWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPAV 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LS  L+ G +SPR+CW+   +   D        A ++L EL+WREF  HL    P
Sbjct: 233 DGTSGLSENLTYGEISPRKCWHSGWQALNDGKG----DAETFLKELVWREFAYHLAYHTP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +        W        +    ++AWKQG TG   +DAAMR++   G MHNR RMI A
Sbjct: 289 RITTDNWKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K LL  W+IG  +F   L+D D  SN  GWQW+A +G D+ PYFR+FNP  Q  +F
Sbjct: 349 SYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ W+ E    P+      Y   P SW        +YP PIV         L+ 
Sbjct: 409 DKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQ--DSYPDPIVPADVGRSRALDA 466

Query: 474 YY 475
           Y 
Sbjct: 467 YQ 468


>gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 505

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 168/483 (34%), Gaps = 28/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + +VW + DLR+ D+  L  A       V+ +++  PE W    +S RQ  F   ++  
Sbjct: 10  PLTVVWFKRDLRLHDHAPLSQAAQA--GTVLPLYVIEPEYWALPDVSYRQWRFWAGAIAD 67

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ ++  G              ++ L           L  +++               +
Sbjct: 68  LQQQIATLGGQLCLRS----GAVVDVLSQLRADYGPFDLVAHQETGNAWTFARDN---AV 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +        D +     G     AL   +    +   +   L                 P
Sbjct: 121 RDWCHRNGADFTEHQQHGIWRGAALDRNRWAKRWDAMMAAPLTPIPSDIDWARVTSDALP 180

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              +            I  M   G   A   L  F  ++   Y +    P       S+L
Sbjct: 181 DAAALGLTD-----DGIVAMQSPGLAAARATLDSFLHDRGAPYQKAMSSPVSGETACSRL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL-------LIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SP+L  G +S R+ +         +            S   S++  L W   +   +   
Sbjct: 236 SPHLMAGSISMREVYQATLARQSAVAALPKADRGTWPSAMKSFVGRLHWHCHFMQKLEAE 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        +        DS LL A+++G TG+P +DA MR L   GW++ R+R +  
Sbjct: 296 PEIEWLPMARIYEGLRPTPTDSSLLSAFEEGRTGYPFVDACMRYLRATGWINFRMRAMLM 355

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF   +L + W+           D +   +    Q    +G   +   RI++P  QG   
Sbjct: 356 SFASYNLWLPWQQSGTVLARLFTDYEPGIHWPQSQ--MQSGETGINAVRIYSPVKQGYDQ 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G F R W+PEL ++  + +  P +      L   YP  IVDH++       + Y  +
Sbjct: 414 DPTGVFTRQWVPELAHLTGKALQDPWTLDA---LPKGYPARIVDHQQTAREAKQRIYGLR 470

Query: 479 KQS 481
           + +
Sbjct: 471 RTA 473


>gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 504

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/483 (23%), Positives = 187/483 (38%), Gaps = 33/483 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D+K L  A       V+ +++  PE W+Q   S RQ  F   SLL
Sbjct: 1   MALQLVWFKRDLRVKDHKPLQQALLR--GPVLPLYVVEPELWQQQDASERQWLFCRESLL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L+  G            D +E  +    Q  +  L+ + +       +       
Sbjct: 59  DLRLALAALGQPLLVRS----GDVVEVFERAHRQFGLEALWSHEETGNGWTYQRDQRVAL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +       +P   ++       +    +   + + +  + L    +  I   G
Sbjct: 115 ----WCRQHGIAWKEIPQFGVIRRLRSRTRWAKRWEAQMAEPITPSPLGLPSIEGIDA-G 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244
            +     P     P          G   AL  L  F + +   Y      P    T    
Sbjct: 170 VIPDCPHPTLASDPCPH---RQSGGRSMALLELDDFLEHRAPGYARSISSPNTAFTGCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ G LS R+                  G  S+ + L W   +   +   PS+   
Sbjct: 227 LSAYLTWGCLSMREVIQT-------SRGFSGRGISSFESRLHWHCHFIQKLEAQPSIEF- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P+   +    D   L AW +G TG P +DA MR L   GW++ R+R +  SF    
Sbjct: 279 EDFHPFMRGLRCTND-QRLLAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYH 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR    +   Q +D +   +    Q    +G+ ++   R++NP  QG+  D  G F
Sbjct: 338 LWLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTAINTVRVYNPIKQGQDHDLNGEF 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL+ V   Y+H P              L ++YPLP+V+   A      + +A +
Sbjct: 396 IRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALAAREAKQRIWAIR 455

Query: 479 KQS 481
           ++S
Sbjct: 456 ERS 458


>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
          Length = 540

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/499 (23%), Positives = 189/499 (37%), Gaps = 36/499 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V + W R  LR+ DN A   A      +V  VF+  P   +   +   + +F+  SL  
Sbjct: 5   AVSIHWFRKGLRLHDNAA-LLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLESLRD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KSL   G      +       ++ L+    +  VT+L + R  E     RD    +  
Sbjct: 64  LDKSLRTLGSRLYVLK----GKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELA 119

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPF------------RKALIQNLVQADL 174
           +   I            P   +  A    K+   +              A +    + D 
Sbjct: 120 EKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSAPTKEDF 179

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQ----NALHILRKFCKEK 226
                            ++P   D  ++  D       P GE          L++     
Sbjct: 180 PQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKAWIA 239

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +   +         T+ LSPYL  G LSPR  ++ L   + +     K    S   +L+
Sbjct: 240 HFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKPPV-SLHGQLL 298

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+        +    +       +I+W+ +  LL AW+   TG+P IDA M QL   
Sbjct: 299 WREFFHMCGYAVKNFDRME-GNRICRQIDWDTNDALLAAWENARTGYPWIDACMTQLRRE 357

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL   W  G + F   L+D D   N+  W W + +      Y
Sbjct: 358 GWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMWLSCSSFFYQ-Y 416

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           FR+++P   GK+ DP G +IR +LP+L   P +YI+ P              +  +YP P
Sbjct: 417 FRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDYPEP 476

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVDH +       +  A  
Sbjct: 477 IVDHAEVSAANKARIRACY 495


>gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 464

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 222/480 (46%), Gaps = 30/480 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN AL+ A    +   I +FI    Q     I      +++     
Sbjct: 4   KIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQE----IGGASKLWLH----- 52

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              SLS               + +E +     +  +T  ++NR Y+   + RD  +++ L
Sbjct: 53  --HSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFL 110

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIR 183
           Q + I  S  +  L + P          YKVYTPF      + +        S       
Sbjct: 111 QEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKL 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T     S         +Q I   + IGE  +  IL +F   KV  Y   RD  +   TS
Sbjct: 171 ETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + +YP    
Sbjct: 231 KLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LH 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR+RMI ASFL+K
Sbjct: 285 NKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFLIK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           + L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+    
Sbjct: 345 NCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-E 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR ++PEL  +P + I  P    +         L  NYP P++D KK+    L  +   
Sbjct: 404 YIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPVIDLKKSRDKALELHKKL 463


>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
          Length = 542

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/503 (23%), Positives = 188/503 (37%), Gaps = 35/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59
           M ++   S  + W R  LR+ DN+AL  AC N  A +  +F+   +    +      ++ 
Sbjct: 1   MSSSKEPS-SIHWFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPESRAGPLRTA 58

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + + L  KG      +        E L     +  V KL +    E     R
Sbjct: 59  FLLESLQDLDEQLRAKGSRLFVVR----GKPEEVLPQLFEEWNVKKLTFEADSEPRSRAR 114

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+ +    +   +      +  L      +  +   +            L          
Sbjct: 115 DREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDC 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------LHILRKF 222
                     P   P   +Y   +I  +  +G +                     ++ + 
Sbjct: 175 APDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMARE 234

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                +   +         T+ LS Y+S G LS R+ W+ L + +            S  
Sbjct: 235 DWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSK--PPVSLK 292

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+W+EF        PS        P   +I W+KD   L AWK+  TGFP IDAAM Q
Sbjct: 293 GQLLWKEFNYFSGYSIPSFDKM-VGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQ 351

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL   W  G   F   LLD D + NN  WQW + +   
Sbjct: 352 LKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFF 411

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455
              YFR ++P   GK+ D  G +I+ +LP L   P++YI+ P +   +        +  +
Sbjct: 412 YQ-YFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKD 470

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YP PIVDH       + +   A 
Sbjct: 471 YPKPIVDHADTSKANMAKMNDAY 493


>gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
 gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
          Length = 534

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 228/488 (46%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     ++   ++ +++  P     HG S  +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + QC N    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +
Sbjct: 110 MQKELKDLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
             ++    + D  ++ PG++L       KV+TP+ KA +  L          P       
Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWLAKLRSEPELLDTNPPPAANPS 229

Query: 187 --------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                         P   S+     +   + I  ++P G   A         +++ +Y  
Sbjct: 230 SMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASA-RMDTFLKQISHYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWR 288
            R  PA   TS++S Y S G++S R    ++ +         +    +G + W+ E+++R
Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467
           FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +     YP P VD K+  
Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWKETK 518

Query: 468 HHTLNQYY 475
              ++++ 
Sbjct: 519 ARAIDRFK 526


>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
          Length = 558

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 120/488 (24%), Positives = 196/488 (40%), Gaps = 28/488 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69
           +   R  LR+ DN +L  A  +S + +  V++      +    + A +  F+  SL  + 
Sbjct: 6   IHLFRKGLRLHDNPSLLGALASS-STLYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G             +   L     Q  +T++ Y+ + E    R DK ++   Q 
Sbjct: 65  TRLRAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +      S        I+        +       ++  L + +  +  V        V
Sbjct: 121 NGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIP 237
           TP ++ R +  P           + ++P GE +A        +       +         
Sbjct: 181 TPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPNS 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  T+ LSPYLS+G LS R  ++RL   +            S   +++WREF+  + + 
Sbjct: 241 LLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPV-SLQGQVLWREFFYTVASA 299

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P+    +       +I+W  D   L+ W+   TGFP IDA M QL   GW+H+  R   
Sbjct: 300 TPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAV 358

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   G+
Sbjct: 359 ACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFCPVRFGR 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470
           R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PIV H +A    
Sbjct: 418 RTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRN 477

Query: 471 LNQYYAAK 478
           L      +
Sbjct: 478 LALMRQVR 485


>gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum]
          Length = 700

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/505 (27%), Positives = 220/505 (43%), Gaps = 32/505 (6%)

Query: 1   MKATTAMS---------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
           M A+ +MS           +VW R DLR+ DN A  AA   +  +V+  ++  P++   +
Sbjct: 1   MSASPSMSGGAGERTRTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPKEDGPY 59

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                   ++  SL  +  SL + G      + S   D++  L         T LF+N  
Sbjct: 60  YPGRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHL 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170
           Y+   + RD  +++ L    I     +S L   P  +L+     + ++TPF    +  + 
Sbjct: 118 YDPLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVD 177

Query: 171 QA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
                    R       R                    +   +  G QNA      F   
Sbjct: 178 PPAPMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFING 237

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSW 281
            +  Y   R       TS LSPYL  G LS R+ +++++ +      +     + G   +
Sbjct: 238 PLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLF 297

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L  +  RE+ R L   +P     KP +       W  +    + W+QG TG+P++DA MR
Sbjct: 298 LRSIGLREYSRRLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMR 356

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D
Sbjct: 357 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPD 416

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455
                RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  N
Sbjct: 417 GRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSN 476

Query: 456 YPLPIVDHKKACHH---TLNQYYAA 477
           YPLPIV+  +A       L++ +  
Sbjct: 477 YPLPIVELDEAKSRLQDALSEMWEL 501


>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
 gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
          Length = 540

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   + RD  
Sbjct: 66  QTLEDLDNQLRKLDSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +           + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W K    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQKHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
 gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
          Length = 507

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 194/493 (39%), Gaps = 31/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           + W R  LR  DN +L  A   S   V  V++      ++H     A    F+   L ++
Sbjct: 10  IHWFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEEL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L + G+     +      + ++   +  + +VT+L ++   E     RD  + K   
Sbjct: 69  DTRLRKYGLRLFVVR----GSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIAS 124

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      +         +        +       +   + +                
Sbjct: 125 DMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFANC 184

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-------------RKFCKEKVYYYVEQR 234
             P    +   +    ++ +    +  A  +                      +   +  
Sbjct: 185 TLPPEALQDKKFDMVTLEELGMRCDFPAKFVGGETEALRRLEKSLEDKDWVLKFEKPKTS 244

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
               +  T+ LSPY+++G LS R  +++L + +       +    S   +LIWREF+   
Sbjct: 245 PNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSKAKNHSQPPV-SLHGQLIWREFFYTA 303

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            A  P+    +       +I WNK+   L  W+   TGFP IDAAM QL   GW+H+  R
Sbjct: 304 AAHTPNFNQME-GNRVCLQIPWNKNDEHLTRWRNAQTGFPWIDAAMTQLRKEGWIHHLAR 362

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W +++      YFR+++P +
Sbjct: 363 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMWLSASAFFHQ-YFRVYSPIV 421

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            GK+ DP+GTFIRH+LP L N P +YI+ P              +  +YP PIVDHK+A 
Sbjct: 422 FGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGKDYPRPIVDHKEAS 481

Query: 468 HHTLNQYYAAKKQ 480
              L+     +K 
Sbjct: 482 QRNLDIMRDVRKD 494


>gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis]
          Length = 431

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 148/468 (31%), Positives = 214/468 (45%), Gaps = 42/468 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR DLR+ D  AL AA    D+ V+  F+  P   R      R+  F++ SL ++   
Sbjct: 1   MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARSS--GERRLAFLFDSLRELDDK 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  + +V +           E +           +  +  +     RRD+ + + L    
Sbjct: 59  LDGRLLVVR-------GRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVP 111

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           +  +    ++ P G I     + YKV+TPF +    +  +    S    +  +       
Sbjct: 112 LEATGSPYLVSP-GRITKDDGEPYKVFTPFFRRWRDHGWRRPAESSVPSSAVV--DPADI 168

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
                   P   +   FP GE  A     +F    +  Y E RD PA   TS++S YL  
Sbjct: 169 ANSGRIAVPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR     L +           GA ++L EL +R+FY  ++  +P          + 
Sbjct: 229 GNIHPRTLAVDLGK---------GKGAQAYLRELAFRDFYADVLWHWPHSLWHNWNRRFD 279

Query: 312 --EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E    +      + WK G TGFP++DA MRQLN  GWMHNR+RMITASFLVKDL + W
Sbjct: 280 AIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDLHLPW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP  Q K+FDP+G ++R W+
Sbjct: 340 WWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYVRRWV 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
                               +  + +YP PIVDH       L +Y   
Sbjct: 400 -------------------GDVEADDYPGPIVDHSAERAEALRRYGEI 428


>gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group]
          Length = 710

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/490 (27%), Positives = 220/490 (44%), Gaps = 30/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL + G       + +   D++  L         T LF+N  Y+   + RD  ++  L  
Sbjct: 80  SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTA 136

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  +++     + ++ PF    +   +      L  P     G +
Sbjct: 137 EGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLPPKRIAPGEL 194

Query: 189 TPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                P          +          +  G QNA   L  F    +  Y   R      
Sbjct: 195 PARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSA 254

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ +++++ +      +           +L  +  RE+ R+L  
Sbjct: 255 STSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G 
Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH- 469
           +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+   A    
Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRL 493

Query: 470 --TLNQYYAA 477
              L++ +  
Sbjct: 494 QDALSEMWEL 503


>gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
 gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
          Length = 492

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 188/488 (38%), Gaps = 24/488 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +TT  S+++VW + DLR++D+  L AA  +S    + V+   P        S R   F
Sbjct: 1   MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + + L+  G        S    + + L +      +  L+ +++  +      
Sbjct: 58  VWQSLQDINQQLASFGHQILIANVS----AEQGLATLAAHFSIQGLYSHQEVGLVNTFER 113

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +           +          G++   A         ++  +   L   ++ +  + 
Sbjct: 114 DI----AIQHWCTEQGISWHQSAYGAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQGLI 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           ++  T     +N+P  +    + +        +  L    +   +  Y+ +    +  + 
Sbjct: 170 SVCATDLGLDNNVPSAWRRKEKGLQTGGETLAKQTLEDFFQRRAKNYYFQISSPSLARLS 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +  +SPYL+ G +S R+ +  L   +    ++      +  + L W   +         
Sbjct: 230 CSR-MSPYLAWGNISLREMYQTLLSYWNAAGLRR--SLIALASRLHWHCHFIQKFESECE 286

Query: 301 VCMGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +        +          D+ LL+AWK G TG P++DA MR L   G+++ R+R +  
Sbjct: 287 MEFRCVNRAYEPLLAQACQPDTELLEAWKSGQTGIPLVDACMRCLYHTGYLNFRMRAMLV 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L   +  +WR G  +     LD +   +   +Q  A  G   +   RI+NP  Q +  
Sbjct: 347 SVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQA--GVTGINTIRIYNPIKQAQEH 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLN 472
           D QG FIR W+PEL  VP   +  P            L  +  Y  P++D         +
Sbjct: 405 DAQGVFIRQWVPELAEVPLSLLFEPWQMSPMEAMMYQLPADSRYLNPVIDVAACAKQARD 464

Query: 473 QYYAAKKQ 480
           + +A +K+
Sbjct: 465 RLWAWRKR 472


>gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 509

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/489 (20%), Positives = 183/489 (37%), Gaps = 30/489 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D++ L +A        + ++   P        + R   F+Y S++ 
Sbjct: 4   KINIVWFKRDLRLSDHQPLKSAFDTG-LPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L++             ++    L     Q  ++ +F +++  +N            
Sbjct: 63  LNSQLARFNAKVYTFN----ENMQTLLQKLNGQFEISYIFSHQEIGLNNT---------F 109

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +  K++     +        A+   K          Q  +QA L       +     
Sbjct: 110 ERDLAIKAWCHHNHINWQESPTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKNVNSVK- 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
           +     P   +   Q  D     G  +A  +++ F  ++   Y +    P+      S+L
Sbjct: 169 LKNYKNPELPETYTQDDDNFQQGGPLHAREVMQSFFTQRGKGYQKGISSPSLSRTHCSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304
           SPYL+ G +S RQ +    + +       K         +    ++ H M  + S C   
Sbjct: 229 SPYLAWGNISLRQVYQTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQKFESECTME 288

Query: 305 ----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                P              H ++ W QG TG PIIDA MR L   G+++ R+R +  SF
Sbjct: 289 FKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFRMRAMLVSF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           +   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  DP
Sbjct: 349 VTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQDP 406

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G FI+ W PEL  +P +Y+H P          +   L  +YP P++D   A      + 
Sbjct: 407 TGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLDLTLASKDARERL 466

Query: 475 YAAKKQSLL 483
           +  + +  +
Sbjct: 467 WQYRDRPEV 475


>gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group]
 gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group]
 gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group]
          Length = 718

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/490 (27%), Positives = 220/490 (44%), Gaps = 30/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL + G       + +   D++  L         T LF+N  Y+   + RD  ++  L  
Sbjct: 80  SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTA 136

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  +++     + ++ PF    +   +      L  P     G +
Sbjct: 137 EGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLPPKRIAPGEL 194

Query: 189 TPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                P          +          +  G QNA   L  F    +  Y   R      
Sbjct: 195 PARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSA 254

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ +++++ +      +           +L  +  RE+ R+L  
Sbjct: 255 STSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G 
Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH- 469
           +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+   A    
Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRL 493

Query: 470 --TLNQYYAA 477
              L++ +  
Sbjct: 494 QDALSEMWEL 503


>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
 gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
          Length = 540

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L + G      +        E         RV  L +    E   + RD  
Sbjct: 66  QALEDLDNQLRKLGSRLFVVR----GKPAEVFPRIFKSWRVEILTFETDIEPYSLSRDAS 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P      + L
Sbjct: 122 VQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGAPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                          +       + +    P +     FP GE  AL  +    K++++ 
Sbjct: 182 QNITTPPNDEVEQEDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKDELWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +  + L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-MGNVYCMQIPWQEHPNHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P+  I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
 gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
          Length = 570

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    VF+  P       I   +  F+   L  +  
Sbjct: 24  VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLEDLDC 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 83  SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 138

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + ++ ++   +     V +  +    T
Sbjct: 139 GISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYT 198

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 199 PLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 258

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 259 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 316

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 317 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 375

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 434

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +         K  +  +Y LP+V+H K+ 
Sbjct: 435 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSS 494

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 495 RINIERMKQVYQQ 507


>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 151/498 (30%), Positives = 208/498 (41%), Gaps = 37/498 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIYA 63
           S  L W R DLR+ DNK L AA     A V  V++  P           ++  +  F+  
Sbjct: 4   SRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARLWFLVE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L ++Q+     G            D +  L           L ++R  E     RD+ +
Sbjct: 63  TLRELQQRWRDAGSRLIV----VAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERDRQV 118

Query: 124 EKRLQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            K LQ        D               G          + +    +    + V+A   
Sbjct: 119 AKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVEAPTG 178

Query: 176 SLPVPAIRLTGPVT--------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
              + + +L    +                   +               GE  A   L  
Sbjct: 179 LCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRPGEAAAAEQLAT 238

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFS 280
           F    +  Y   R+ P + GTS LS  LS+G LSPRQ W   +E + +    + +     
Sbjct: 239 FVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQRQAITV 298

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDAAM
Sbjct: 299 WEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPIIDAAM 357

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G 
Sbjct: 358 RQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGM 417

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP  +
Sbjct: 418 DPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDL---LSGEIAALERRGYPELL 473

Query: 461 VDHKKACHHTLNQYYAAK 478
           V+HK         Y   +
Sbjct: 474 VNHKTQQARFKALYATIR 491


>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 463

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 217/463 (46%), Gaps = 33/463 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R D RI DN AL  A        + + I        H   A    +++ ++  + +
Sbjct: 10  IVWFREDFRIADNMALLEA-EKRGQPTLCIVILD----DAHLPGAAARWWLHGAIRSLDE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      +   L     +     +F+NR+Y+      D  ++  L+ R
Sbjct: 65  TLRGMGGALHVFR----GAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +SF  ++L  P S+   ++  YK++T F +A             P   +    P  
Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPM 180

Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           P ++                   +  M+  GE+ A   L  F +     Y   RD P  +
Sbjct: 181 PDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +SP Q W+    +              +L EL WR+F   L+ F P 
Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKA---------CPDKFLMELGWRDFAWSLLFFNPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+RM+ ASF
Sbjct: 292 LATRN-LRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q ++FDP
Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            G +IR W+PEL ++    IHAP     ++  +  YP PIVDH
Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449


>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 485

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 192/481 (39%), Gaps = 26/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR+ D+ AL+ A        + ++I  P          R   F+Y SL  +
Sbjct: 1   MNVVWFKRDLRLHDHDALFKAISLGK-PCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K LS  G      +     ++++ L +   +  +  +F +++  I           R  
Sbjct: 60  NKQLSPYGHRLTVIK----GEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRD----RKI 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 +       P G+++            +   + +++   +L          +   
Sbjct: 112 EYWCKNNSIVWQQSPHGAVVRGLQHRLYWQDHWYNYMARSIPPIEL------NKLKSEQS 165

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLS 246
              ++  F D   Q        GE +A+  L  F  ++  +Y      P+      S+LS
Sbjct: 166 CLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSISSPSRSRHYCSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G LS R C+ + +  F     K    AFS  + L W   +         +     
Sbjct: 226 PYLAWGNLSLRYCYQQTQLAFAQSKGKQHLNAFS--SRLHWHCHFIQKFESESRMEFEAV 283

Query: 307 FIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              + +      D     L  W+QG TG+P++DA +R L T G+++ R+R +  SF    
Sbjct: 284 NRGYLDFPYDIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGYLNFRMRAMLVSFACHY 343

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+   EY     LD D   +    Q  A  G       RI+NP  Q +  DP+G F
Sbjct: 344 LNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQA--GITGTNTIRIYNPVKQSQEQDPEGEF 401

Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           IR W PEL+++    IH+P     L+K   +L+YP P+V+          + ++ + +  
Sbjct: 402 IRLWCPELSSLSNDVIHSPWLLGPLEKQMFALDYPEPMVN-ADCIQINRERLWSWRSRDK 460

Query: 483 L 483
           +
Sbjct: 461 V 461


>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
 gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
          Length = 451

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 171/475 (36%), Positives = 245/475 (51%), Gaps = 30/475 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           M++ + W+R+D R+ DN  L  A      +  A V  VF   P+   ++     +  + +
Sbjct: 1   MNI-ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEYD---ARQQYFF 56

Query: 63  ASLLQVQKSLSQKGIVFQYHQC--SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            +L    K+     +  ++ +    +F ++ E  D         + F +R   I + R D
Sbjct: 57  QALEHFAKNCKTHDMPIRFIEGQEKDFLEATEMADVLLFNAEYVEPFKSRDDGIMKKRGD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  E+ L             LL P ++  +    YKV+TP++ A ++  V          
Sbjct: 117 KKTERLLD----------RHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVDKPYPVKLNL 166

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                     +N      +   A D  F +GE+ A   LR F K  +  Y EQRD+PA+ 
Sbjct: 167 LKERYHKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVD 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS +S YL  G +  R  ++ +++E          G  ++L ELIWREFY  ++  YP 
Sbjct: 227 GTSLMSRYLRTGEIGIRTIFDAVQQEQDSK------GKQTYLTELIWREFYYTILMHYPE 280

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                P      KIEW  D    +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASF
Sbjct: 281 -SKRLPVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 339

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLLVDW+ GE YF  +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD 
Sbjct: 340 LTKDLLVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDK 399

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            GTFIR +LPEL ++P   IH P    ++     +YP+PIV+H  A    + ++ 
Sbjct: 400 DGTFIRTYLPELKDLPKTSIHEP---TEQQRKDYDYPMPIVEHDMARKRAIARFK 451


>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 471

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 208/474 (43%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L +   +     + ++R +E +   RD+ +   L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119

Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
            I  +      +  P  +       Y+VYTPF KA+    V        R        ++
Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+       +       GA  +L EL WREF  HL+   P +    
Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 RRFLAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466


>gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 534

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 140/488 (28%), Positives = 230/488 (47%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     ++   ++ +++  P     HG SA +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + QC +    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +
Sbjct: 110 MQKELKDLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------------- 173
             ++    + D  ++ PG++L       K++TP+ KA +  L                  
Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWLAKLRSEPELLDNNLPPAANPS 229

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            ++           P   S+     D   + I  ++P G   A         +++ +Y  
Sbjct: 230 SMKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASA-RMDSFLKQISHYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWR 288
            R  PA   TS++S Y S G++S R    ++ +         +    +G + W+ E+++R
Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467
           FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +     YP P VD K+  
Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKETK 518

Query: 468 HHTLNQYY 475
              ++++ 
Sbjct: 519 ARAIDRFK 526


>gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 183/481 (38%), Gaps = 22/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA   S+   + ++   P       +S    +FIY SL+++
Sbjct: 4   INVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLMEM 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+               D+ + L     + +++ LF ++++      +         
Sbjct: 63  QTKLAPFNRPLYILHA----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDRQVIDFC 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +   + +      I             +      ++V+      P    +   P 
Sbjct: 119 ----WQEEIELLEAEHSGIQRGIQNRDHWDKAWFSWHKTDIVRNSYSISPFNFDKSLFPA 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                  F  YP Q   P       +         + K Y+    +   + +   +LSPY
Sbjct: 175 ALQFKKTFKTYPKQMQAPGE--NTAHHYLKSFLAERGKNYHRFISKPSESRKSCGRLSPY 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S RQ +  +K        K        L  L WR  +        S        
Sbjct: 233 LAWGNVSSRQVYQLVKASPKYKDNKRAYSG--LLTRLKWRSHFIQKFEVECSYE-YLCLN 289

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E +  + ++  ++AWK G TG+P++DA MR L+  GW++ R+R +  SF    L  D
Sbjct: 290 KGYELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQD 349

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G  +     LD +   +   +Q  A  G   +   RI+NP  Q    DP+G FIR W
Sbjct: 350 WRDGVYHLAKLFLDYEPGIHFPQFQMQA--GTTGINTVRIYNPIKQSMDNDPEGEFIRQW 407

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQSL 482
           +PEL ++    IH P                  YP PI+D K       ++ +  +  +L
Sbjct: 408 IPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHLYPAPIIDIKDTYSLARDRIWGLRSHAL 467

Query: 483 L 483
           +
Sbjct: 468 V 468


>gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 497

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 101/477 (21%), Positives = 186/477 (38%), Gaps = 31/477 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+AL  +  ++D  ++ +FI   E W Q   S RQ  F   S++ +
Sbjct: 4   INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL + G            + I+  +    +  +  ++ +++       +     K   
Sbjct: 62  RNSLKEIGQPLIIRT----GNVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWA 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   +          +N             + LI+  ++ +          +   +
Sbjct: 118 ANKKIIWREFLQFSVFRGNINRDDWSKNWKKNTERELIKRPLRIN---------PIDFDI 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
                 + F +           G +  +  ++ F  EK+  Y +    P       S+LS
Sbjct: 169 GKIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSRLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY+S G +S ++ +           +   + +  + + L W   +   +   P +     
Sbjct: 229 PYISWGCISLKEIFY-------KANLHKNNNSIMFKSRLTWHCHFIQKLESEPELEFHD- 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P+ +         LL  W QG TG+P IDA MR LN  GW++ R+R +  SF   +L 
Sbjct: 281 FHPYFKNSRTKNT-ELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DP G FI+
Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPDGEFIK 397

Query: 427 HWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL N+   +IH P             L Y  PIVD  K       +     ++
Sbjct: 398 KWVPELKNIAIDFIHEPWLLGKFNCDEYAKLQYNKPIVDISKTSREARKKIQEITQK 454


>gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
 gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
          Length = 492

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 185/486 (38%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S++LVWL+ DLR+TD++ L+ A  +       ++I  P        S R   F+  SL  
Sbjct: 3   SINLVWLKRDLRLTDHQPLHDAIQDG-TPFALIYIFEPLLLNDPHFSDRHWRFVLQSLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L+  G          F D+ +  +S      + K+F +++  +N            
Sbjct: 62  INETLTPFGTSVHIL----FGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAA- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  +         G++L  A    +    +   +   L    L       +    P
Sbjct: 117 ---WFTSNGIQWHESQHGAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARWVNLEGIEP 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
               + P          + M   G Q A   L  F + +   Y  +   P+      +++
Sbjct: 174 HMRFSPPLE---WQGKANGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSACTRI 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +   L   K  A +  + L W   +         +    
Sbjct: 231 SPYLAWGNVSLREVYQYLLQHWQ--LKGFKRSAIALSSRLHWHCHFMQKFESEVEMEFRC 288

Query: 306 PFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   I  +     +   AWK G TG P++DA MR L+  G+++ R+R +  S L  
Sbjct: 289 LNRGYEPLIVQSTRKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRAMLVSVLCH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            +  DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q +  DP G 
Sbjct: 349 HMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGINTVRIYNPTKQAQEHDPDGH 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ WLPEL  +P   +  P        +         Y  PI+D          + ++ 
Sbjct: 407 FIKKWLPELAALPAPLLFEPWKMTPMEIMMYEIPKQSLYLNPIIDVDNCAREARERLWSW 466

Query: 478 KKQSLL 483
           +K+  +
Sbjct: 467 QKEPAV 472


>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
 gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
          Length = 558

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/488 (24%), Positives = 196/488 (40%), Gaps = 28/488 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69
           +   R  LR+ DN +L  A  +S A +  V++      +    + A +  F+  SL  + 
Sbjct: 6   IHLFRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G             +   L     Q  +T++ Y+ + E    R DK ++   Q 
Sbjct: 65  TRLQAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +      S        I+        +       ++  L + +  +  V        V
Sbjct: 121 NGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180

Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIP 237
           TP ++ R +  P           + ++P GE +A        +       +         
Sbjct: 181 TPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPNS 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  T+ LSPYLS+G LS R  ++RL   +            S   +++WREF+  + + 
Sbjct: 241 LLPSTTGLSPYLSLGCLSVRTFYHRLNCIYAQSKNHSLPPV-SLQGQVLWREFFYTVASA 299

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P+    +       +I+W  D   L+ W+   TGFP IDA M QL   GW+H+  R   
Sbjct: 300 TPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQEGWIHHLARHAV 358

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   G+
Sbjct: 359 ACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFCPVRFGR 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470
           R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PIV H +A    
Sbjct: 418 RTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRN 477

Query: 471 LNQYYAAK 478
           L      +
Sbjct: 478 LELMRQVR 485


>gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
 gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
          Length = 409

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 188/469 (40%), Gaps = 68/469 (14%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           WLR DLR+ DN AL AA  +   +V+A+F+       +      +  F++  L  +   L
Sbjct: 3   WLRRDLRLDDNPALLAAAES--GRVLALFVLDDAL--RRPSGPVRLAFLHRCLRDLDAQL 58

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
              G        S +  +   L                                      
Sbjct: 59  ---GGRLCVRTGSPYAVAPGRL-------------------------------------- 77

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
                                 Y+V+TPF +A  ++  +     +P   + L        
Sbjct: 78  ---------------RKADGTSYRVFTPFYRAWKEHGWRGPA--IPADPVWLQPADLDGG 120

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP---AIQGTSQLSPYL 249
                  P      + P GE  A   LR F  E +  Y   RD P   +  G +      
Sbjct: 121 SEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGYAAHRDEPAAASESGDAVPGWSG 180

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +               +           A  + +EL WREFY  ++A  PS         
Sbjct: 181 ASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAWREFYADVLAGTPSSAR-TDLTD 239

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               + +       +AWK G TG+PI+DA MRQL   GW+HNR+RMI ASF+ KDL V  
Sbjct: 240 TLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLNVHR 299

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP  QG++FDP G +IR W+
Sbjct: 300 THGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRKFDPAGEYIRRWV 359

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           PEL  +P   +H P            YP P+VDH       L+++  A+
Sbjct: 360 PELRGLPPDAVHEPWKLPA--GPPNGYPRPVVDHAVERREALDRHARAR 406


>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
 gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
          Length = 506

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 120/493 (24%), Positives = 187/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L     NS      VF+  P       +   +  F+   L  + +
Sbjct: 14  VHWFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 73  SLRKLNSRLFVIR----GQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMCKEL 128

Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S  L     +         +     + +I N+         V A  L G  T
Sbjct: 129 GISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVTANLLEGSQT 188

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +      Y    ++            ++  GE  AL  L +  + K +          
Sbjct: 189 PLSDDHDNKYGVPTLEELGFETDKLKPTVWSGGESEALARLERHLERKAWVASFGHPKMT 248

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +  +         S   +L+WREF+   
Sbjct: 249 PQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKKIKKAM--PPLSLHGQLLWREFFYCA 306

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 307 ATKNPNFDKMNE-NPICVQIPWDENAQALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 424

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P    +      K  +  ++PLP+V+H    
Sbjct: 425 FGRKADPNGDYIRKYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKDFPLPMVNHSIVS 484

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 485 KINIERMKQVYRQ 497


>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
 gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
          Length = 421

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 218/468 (46%), Gaps = 52/468 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D+ AL  A   +D  +   F+  P+  R       ++ F++  L  +  
Sbjct: 6   VVWFRRDLRVEDHPALLEAADRADRALAL-FVLDPKLLR--PSGKPRTDFLHRCLKSLDD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     D +E + +   +     +  +        RRD+     +   
Sbjct: 63  RL---GGRLMVVE----GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDE----AVGEE 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V          + PG +       Y+V+TPF +A   +  +    +       +  P + 
Sbjct: 112 VELVEAGSPYAVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADTDASTVDWIKPPRST 171

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
               +      +  +               +F  E++  Y   RDIP + GTS+ S +L 
Sbjct: 172 RPRAKALPDVAELWE---------------RFRDERLPDYHRTRDIPGVDGTSRFSAFLR 216

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            GV+ PR   + L +           G+  + +EL WREFY  ++  +P+          
Sbjct: 217 WGVVHPRTLLDDLGQ---------DEGSKVFRSELAWREFYADVLWHHPASARHN-LDRR 266

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            ++IE ++D     AW+QG TG+PI+DA MRQL   GWMHNR+RMITASFLVKDL + W 
Sbjct: 267 FDRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLVKDLHLPWW 326

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G  +FM  L+DGDLASN   WQWAA +G D+ PYFR+FNP  QG++FDP+G +IR ++P
Sbjct: 327 WGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKGDYIRRYVP 386

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           EL +V  + +H P               PIVDH       L+++ A K
Sbjct: 387 ELRDVAGKAVHQPR-------------DPIVDHAHERQVALDRFAAIK 421


>gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1]
 gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1]
          Length = 550

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 180/549 (32%), Positives = 260/549 (47%), Gaps = 74/549 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGI 53
           M  +  +S  L+W R DLR+ DN AL         A  ++++ + AVF+ TP+QW  H +
Sbjct: 1   MSHSYKVS-ALMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDM 59

Query: 54  SARQSHFIYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           S  Q   +  +L  + + L    GI     Q  ++ DSI+ ++++C+   +T +  N +Y
Sbjct: 60  SISQVDLMMRTLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEY 119

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E+NE +RD  L KRL    I  +      + PP +I      +YKV+TPF K   Q L  
Sbjct: 120 EVNEQQRDTALAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQI 179

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------------------ 207
           +      + ++                                                 
Sbjct: 180 SPPVLYDINSLTEGDIKQKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQR 239

Query: 208 ----------------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                                 +P GEQ A+  L  F ++ +  Y   RD PA+ GTSQL
Sbjct: 240 FTSHYQLSKNNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQL 299

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA------------FSWLNELIWREFYRH 293
           S YL++G++SPR C+                                W++EL WR+FYRH
Sbjct: 300 SAYLTLGIISPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRH 359

Query: 294 LMAFYPSVCMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +    P +  G  +   T+    W+ D+   +AW QG TG P+IDAAMR LN  G+MHNR
Sbjct: 360 VTVDRPDIVKGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNR 419

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+TA FL KDL +DWR+GE YFM  L+DGD ASNNGGWQW+ASTG D+ PYFRI NP 
Sbjct: 420 LRMVTAMFLTKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPF 479

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKAC 467
            Q K  D    FI+ WLPEL ++    +H  +              +NYPLP+++HK+A 
Sbjct: 480 SQAKTHDKDAIFIKSWLPELTDITANILHDENKLRKALSKQGAFAHVNYPLPMIEHKQAR 539

Query: 468 HHTLNQYYA 476
            + + Q+ A
Sbjct: 540 RYAIEQFKA 548


>gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
 gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
          Length = 527

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 182/477 (38%), Gaps = 28/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + D R+ D++ L  A       V+ +++  P+ W     S RQ  F+   + +  ++
Sbjct: 1   MWFKKDFRLFDHRCLTFAAQ--KGPVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L + G            D +E L          +L+ +++   N   +     ++   + 
Sbjct: 59  LEELGGSMAI----ASGDVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                +            +     K +       I +L ++                   
Sbjct: 115 GVAFHEPLQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDRT-------M 167

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPYL 249
             P         I  + P G   AL +L  F  E+   Y      P     G S+LSPYL
Sbjct: 168 PSPEVLGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGCSRLSPYL 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + G +S R+ +   ++   ++                S++  L W   +   +   P + 
Sbjct: 228 AYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKLELEPELE 287

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +T   +    +  L+A+ +G TG+P +DA MR L   GW++ R+R +  SF  
Sbjct: 288 WLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRAMLMSFAS 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            DL + W+   +       D +   +    Q    +G   +   RI++P  QG   D +G
Sbjct: 348 YDLWLPWQKSGDVLARLFTDYEPGIHWPQSQ--MQSGVTGINAIRIYSPIKQGLDQDIEG 405

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           TF R W+PEL  +P + +  P     +    L+YP PIV+HK+A     ++ +A KK
Sbjct: 406 TFTRQWVPELAALPDEILQTPWLLEGE----LSYPPPIVEHKEAAALAKSRLWAIKK 458


>gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
 gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
          Length = 466

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 220/475 (46%), Gaps = 25/475 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R DLR++D+ AL AA  + +  VI VFI   +      + A     +   +  + ++
Sbjct: 2   VWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHDDQV---ETLGAAPKWRLGLGIDHLSET 57

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L          +      ++E L +   +     +F+ R Y+   V RD  L+  L+   
Sbjct: 58  LEGLNSRLILRRGP----ALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 113

Query: 132 IC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLTG 186
           I  +SF   ++  P ++       YKVYTPF   +    V A      +     A   + 
Sbjct: 114 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPSSE 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            ++  N+    D     + P   +GE  A   L  F  + V  Y   RD PA+ GTS LS
Sbjct: 174 ALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSGLS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++G +SP QCW+       +       GA ++L EL+WREF  HLM   P +     
Sbjct: 234 ENLALGEISPHQCWHAGLRARQEGK----PGAETFLKELVWREFAYHLMHHTPRILTDNW 289

Query: 307 FIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              W       ++ +  +  W+QG TG   +DAAMR+L   G MHNR RMI AS+L K L
Sbjct: 290 KEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVASYLTKHL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD    ++
Sbjct: 350 LSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRQYV 409

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           + W+ +    P++     Y   P +W    D    YP P+V   +     L  Y 
Sbjct: 410 KRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAYE 462


>gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis]
          Length = 648

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 118/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    VF+  P       +S  +  F+   L  + +
Sbjct: 87  VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSANVSINKWRFLLQCLEDLDR 145

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL Q        +        + L     +   T L +    E     RD+ +    +  
Sbjct: 146 SLHQLNSRLFVIR----GQPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITTLCKEL 201

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + +I  +   +  +  V A  +    T
Sbjct: 202 GITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACIGSAYT 261

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        +    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 262 PLKDDHDDFFGVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFGRPKMT 321

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +L+WREF+   
Sbjct: 322 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLADLYKKIKKTI--PPLSLHGQLLWREFFYCA 379

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+K+   L  W  G TGFP IDA M QL   GW+H   R
Sbjct: 380 ATNNPNFDRM-HGNPICVQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQLAR 438

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 439 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMWLSCSSFF-QQFFHCYCPVR 497

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +         K  +   Y LP+V+H K+ 
Sbjct: 498 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKSS 557

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 558 RINVERMKRVYQQ 570


>gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
 gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
          Length = 450

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 164/469 (34%), Positives = 233/469 (49%), Gaps = 24/469 (5%)

Query: 11  LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + W R+D R+TDN  L+           +  VF   P+      +   +  + ++++   
Sbjct: 4   ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYCHPFEV---RHDYFFSTMRTF 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L  KG+  +       D  ++ L        +  L++N +Y     +RD  + + L 
Sbjct: 61  MDDLEAKGLGLRVLVAETEDAFVKQLGE------MDVLYFNAEYVEPFKQRDDRVIEALS 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V      D  L  P +    +   YKV+TPF+KA       A          +     
Sbjct: 115 EDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYAEQPPAPYEVDVNRLSQYIRSK 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                     +  +       +GE  A   L +F  +++  Y E+RDIP+I GTS+LSPY
Sbjct: 175 NEQPSELKELFK-RCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGTSRLSPY 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  GVLS R    ++             G  ++ +EL+WREFY  +MA +      +PF 
Sbjct: 234 LRTGVLSIRTITEQVLSARQSK------GRDTYYDELLWREFYYMVMAKFHG-LKDQPFN 286

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + IEW  +    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K LL+D
Sbjct: 287 DKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLSKHLLLD 346

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF  +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP GTFIR +
Sbjct: 347 WRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDGTFIRKY 406

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +PEL +V  + IH P           +Y +P+VDHK+A    L ++ A 
Sbjct: 407 VPELKHVSDKSIHFP-----DPSERDDYAMPLVDHKEARERALERFKAL 450


>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 437

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 207/455 (45%), Gaps = 33/455 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI DN+AL+ AC NS  +VI VFI  P    +     R++ F+  SL  + K
Sbjct: 6   IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            + +KG           D+      +   +  +  +F NR +  +    ++ ++K   + 
Sbjct: 65  EIEKKGGRLYCFH----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLNE 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +     +   L     + +     K Y  + + L    V +  R            +  
Sbjct: 121 GVDFVTFNDNFLAEIDKIPYRKIYSKFYRYWEQNLRLTEVSSPERINTPKLNEPEIDIVA 180

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           S I    +  ++                +R+  +     Y E RD   I GTS+LSPY+ 
Sbjct: 181 SEISHEKNIVWK------------PDFGIRRLKEFDFNRYEELRDRLDIDGTSKLSPYIR 228

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G++S R+ +    E               ++ EL WREF+ H+   +P       F   
Sbjct: 229 FGLISLRKIYRVASEAAGQ--------DCQFIKELAWREFWYHIKLNFPQF-KNLEFQEK 279

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             KI W  D  L +A+ +  TG+P+IDAA+ QL    WMHNR RMI ASFL KDL++DWR
Sbjct: 280 RRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLTKDLMIDWR 339

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +FM  L+D D   N G WQW AS G D  P  RIFNP IQ K+FDP   FI+ +LP
Sbjct: 340 WGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDCKFIKKYLP 398

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
            L  +P+  +H P +          Y  PIV+H +
Sbjct: 399 SLKKLPSFMLHDPLTHRLP------YHKPIVNHFE 427


>gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group]
          Length = 700

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128
           SL + G       + +   D++  L         T+LF+N  Y+   + RD    E    
Sbjct: 80  SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495

Query: 471 LNQYYAA 477
           L++ +  
Sbjct: 496 LSEMWQL 502


>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
 gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
          Length = 474

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR+ DN AL  A   +   +I ++I      ++  + A     +   L +  K
Sbjct: 8   IWWIRRDLRLRDNPAL-RAAQEAGGPIIPLYIHD---AQEEALGAAPKFRLGLGLERFAK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +KG      +     D++E L     +     + ++R Y+    +RD  +++ L+  
Sbjct: 64  TLEEKGSRLIVRR----GDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKAS 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185
            I  KS    +L  P ++      MY+VYTPF KA+       L  A  R     +    
Sbjct: 120 DIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAPESWPSG 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  AL  L  F  E+V  Y   RD PA   TS+L
Sbjct: 180 EALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATSEL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SP + W+   +   D       GA  +L E++WREF  HLM   P +    
Sbjct: 240 SENLAWGEISPHRMWHLGAQAMQDGQ----PGAEHFLKEVVWREFAYHLMHRSPRILTRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W      +     LQ W+QG TG+  +DAAMR+L   G MHNR RMI ASFL K L
Sbjct: 296 WREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G + 
Sbjct: 356 MIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGDYA 415

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPE    P +   A     P  W    D S     PI+  K+     L+ Y  ++ Q
Sbjct: 416 RRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSR--VSPIIGLKEGRERALSAYKESRNQ 473

Query: 481 S 481
           S
Sbjct: 474 S 474


>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
          Length = 530

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 122/492 (24%), Positives = 194/492 (39%), Gaps = 30/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R  LR+ DN AL AA  +S+  V  V+I           I A + HF+  SL  ++
Sbjct: 6   IHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLR 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL Q G      Q     +    +  +  +  +T++  + + E      +  +    + 
Sbjct: 65  SSLCQLGSCLLVIQ----GEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGEE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 S     L     IL        +       ++  L   ++    + A       
Sbjct: 121 LGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDFQRCS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD------------- 235
            P              D   P    +          +++  ++  R              
Sbjct: 181 PPELCLAECYRVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADRSGWVASFTKPKTVP 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +  T+ LSPY S+G LS R  + RL   +            S   +L+WREF+ + +
Sbjct: 241 NSLLPSTTGLSPYFSMGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTV 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A            P   +I W +D+  L  WK   TGFP IDA M QL   GW+H+  R 
Sbjct: 299 ASATPNFTKMAGNPICLQIRWYEDAERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   
Sbjct: 359 AAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSAS-AFFHHYTRIFCPVRF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
           G+R DP+G +IR +LP L N P++YI+ P +  ++        +  +YP P+VDHK+A  
Sbjct: 418 GRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASD 477

Query: 469 HTLNQYYAAKKQ 480
           H L      +++
Sbjct: 478 HNLQLMKQVREE 489


>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
 gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
          Length = 540

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 199/501 (39%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        E         RV  L +    E   + RD  
Sbjct: 66  QTLEDLDNQLRKLDSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P    + + L
Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +           + +       + +    P +     FP GE  AL  + +  K++++ 
Sbjct: 182 KKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  +N+  +E +    K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499


>gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group]
          Length = 700

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128
           SL + G       + +   D++  L         T+LF+N  Y+   + RD    E    
Sbjct: 80  SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495

Query: 471 LNQYYAA 477
           L++ +  
Sbjct: 496 LSEMWQL 502


>gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group]
 gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group]
          Length = 693

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  +  
Sbjct: 14  VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 72

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128
           SL + G       + +   D++  L         T+LF+N  Y+   + RD    E    
Sbjct: 73  SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 129

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 130 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 189

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G QNA   L  F    + +Y   R       TS
Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P
Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 309

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 310 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 368

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 369 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 428

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 429 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 488

Query: 471 LNQYYAA 477
           L++ +  
Sbjct: 489 LSEMWQL 495


>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 464

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 221/480 (46%), Gaps = 30/480 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN AL+ A    +   I +FI    Q     I      +++     
Sbjct: 4   KIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQE----IGGASKLWLH----- 52

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              SLS               + +E +     +  +T  ++NR Y+   + RD  +++ L
Sbjct: 53  --HSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFL 110

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIR 183
           Q + I  S  +  L + P          YKVYTPF      + +        S       
Sbjct: 111 QEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKL 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T     S         +Q I   + IGE  +  IL +F   KV  Y   RD  +   TS
Sbjct: 171 ETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G +SP Q +N +       L    +    ++ EL+WR+F  + + +YP    
Sbjct: 231 KLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LH 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR+RMI ASFL+K
Sbjct: 285 NKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFLIK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           + L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+    
Sbjct: 345 NCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-E 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR ++PEL  +P + +  P              L  NYP P++D KK+    L  +   
Sbjct: 404 YIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPLIDLKKSRDKALELHKKL 463


>gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
 gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
          Length = 493

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 205/487 (42%), Gaps = 32/487 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55
           M   T     LVW RNDLRI DN+ L  A   +D KV+ VF      ++           
Sbjct: 9   MSEKTI----LVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGD 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  ++  ++K+L Q G            D ++ +     +  V++++++R+    
Sbjct: 64  FRTRFLLEAVADLRKTLQQHGAELIVRS----GDPVDIIPQLAEEYHVSEVYHHREVAFE 119

Query: 116 EVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E      +E  L  + +  K F          +      +  V+T FRK + ++      
Sbjct: 120 ETDISAKVEAVLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPC 179

Query: 175 R----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---LHILRKFCKEKV 227
                ++ +P I   G +       F +    +   +   G +           +  + +
Sbjct: 180 FETPGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCL 239

Query: 228 YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   R+       +S+ SP+LS+G LS RQ +  +K    +         +  + EL+
Sbjct: 240 KTYKTTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQERGAND--STYWLIFELL 297

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+++R +   Y +                  +  L + WK G TG P IDA MR+LN  
Sbjct: 298 WRDYFRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNAT 357

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   ASFLVKDL V+W  G  YF  +L+D   ASN G W + A  GND     
Sbjct: 358 GFMSNRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPRE-N 416

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
           R  N   Q   +DP+G +++ W+PEL  +P + +  P    +      K +L +NYP  I
Sbjct: 417 RHLNVIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKLI 476

Query: 461 VDHKKAC 467
           ++     
Sbjct: 477 INLAVTS 483


>gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 503

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 108/478 (22%), Positives = 187/478 (39%), Gaps = 31/478 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++++W + DLRI DN+AL  +  + D  +I +FI   E W Q   S RQ  F   SLL 
Sbjct: 3   NINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLLD 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ SL+  G              IE  D       +  ++ +++       +     ++ 
Sbjct: 61  LRISLANIGQPLIIRT----GKVIEIFDQISNNFEIKAIYSHQETGDYLTYKRDQEVRKW 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +          L+      K          +  ++  L + P     +   
Sbjct: 117 ASMKKIIWKEYLQFSVFRGKLDRNNWSTKW---------KKNMERKLFTEPSKINPIEID 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
                   FF +           G +  L  +  F   K+ YY +    P       S+L
Sbjct: 168 PGEIPPDNFFCFKDDFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISSPEKSFDSCSRL 227

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY+S G +S ++  +                +    + L W   +   +   P +   +
Sbjct: 228 SPYISWGCISIKEIIH-------KANSITNPNSKMLKSRLTWHCHFIQKLESEPELEFKE 280

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               + +  +   DSHLL+ W +G TGFP +DA MR LN  GW++ R+R +  SF   +L
Sbjct: 281 FHPYFQKIRKK--DSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMRAMLMSFASYNL 338

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+       S+ LD +   +    Q  A  G  S+   RI+NP  QGK  DP+G FI
Sbjct: 339 WIPWQESGSELASKFLDYEPGIHWNQCQMQA--GTTSINVNRIYNPIKQGKDHDPKGNFI 396

Query: 426 RHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + W+PE+ N P  ++H P        K   +  Y  PI++  +   +   +     ++
Sbjct: 397 KKWVPEIQNYPENFVHEPWLMEKFNSKEYENSEYIKPIINLSETTKNARKRIQEITQR 454


>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
 gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
          Length = 466

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 237/476 (49%), Gaps = 25/476 (5%)

Query: 19  RITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
           R+ D+ AL  A       + K++A++   P  + +  +     HF + +L    K   + 
Sbjct: 2   RLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMKMDLNNEHF-FQNLAYFVKEARKS 59

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
            +          DD +           +  +F+N        RRDK +   L+ + I  S
Sbjct: 60  QVYVHLLH----DDVLRAFQQVMDVYNINAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVS 115

Query: 136 FDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTGPVTP 190
                 L     IL      Y+V+TP+ ++  +   Q     D        +     ++ 
Sbjct: 116 TWQDTHLHGAQDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFSSGHMICDESLSQ 175

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
               +  D           IG + A++ L++F ++++  Y E+RDIP++ GTS+LS +L 
Sbjct: 176 KGNEKLRDLIKGCSRKFDQIGTEKAMNTLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFLK 235

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +S R  ++       +  +    G  +++ EL WR+FY  + A YP +   K     
Sbjct: 236 TGTISIRTIFH----AIYEEALYEDEGRETFIKELAWRDFYHMIYAHYPEM-KEKEINSA 290

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            + + WN D  L +AW +G TGFP++DA MRQLN  GWMHNRLRM+TASFL KD L+DWR
Sbjct: 291 FQGMRWNDDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWR 350

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE YF  +L+D D ASN GG+QWAAS G D+VPYFRIFNP  Q KRFDP G FIR ++P
Sbjct: 351 KGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVP 410

Query: 431 ELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           EL ++  ++IH P              L   YPLP VDH++     ++ +  AK+Q
Sbjct: 411 ELEHIDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPTVDHQERRKKAISLFEEAKQQ 466


>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
 gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
          Length = 492

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 151/495 (30%), Positives = 211/495 (42%), Gaps = 37/495 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66
           L W R DLR+ DN  L AA   S A V  V++  P   +       ++  +  F+  SL 
Sbjct: 7   LFWHRRDLRLADNLGLQAAEAISPA-VTGVYVLDPALIQPPESLPPMAPARLWFLVESLR 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G            D ++ L           + ++R  E     RD+ + K 
Sbjct: 66  ELQQRWRDVGSRLLV----VAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDRQVAKA 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ        D   LL    ++                  +  V+    S   P   L  
Sbjct: 122 LQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPPRALID 181

Query: 187 PVTPS----------------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                                         +               GE  A   L  F  
Sbjct: 182 LEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRPGEAAAAAQLAAFAD 241

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLN 283
             +  Y   R+ P + GTS LS  LS+G +SPRQ W   +  + +    + +     W  
Sbjct: 242 GALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKEIARSDEQQQAITVWEQ 301

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREFY+  +  +P +  G P+     +  W  +S   +AW++G TG PIIDAAMRQL
Sbjct: 302 ELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDAAMRQL 360

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           N  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  
Sbjct: 361 NQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           P  RIFNP  Q  +FD +G +IR W+PEL +V T+ +    S         +YP  +++H
Sbjct: 421 P-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDL---ISGEIPALERRSYPEQLINH 476

Query: 464 KKACHHTLNQYYAAK 478
           K         Y   +
Sbjct: 477 KVQQAKFKALYATIR 491


>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
 gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
          Length = 473

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 228/486 (46%), Gaps = 28/486 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   + +   L+W R DLR++D+ AL AA  N+   VI VFI          + A     
Sbjct: 1   MSDKSPI---LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---DALGAAPKWR 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   +  +  SL          +     D++E L +   +     ++++R Y+ + V+RD
Sbjct: 54  LGLGIGALADSLEGVSSRLILRE----GDALEVLQALIKETGAGTVYWSRLYDPDSVKRD 109

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175
             +++ L +  I  KSF   V+  P ++   A   YKVYTPF   +    ++  + A   
Sbjct: 110 SKIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSD 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                +   +  +   ++    D     + P   +GE+ A   L  F    V  Y + RD
Sbjct: 170 LPAPESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRD 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           IP   GTS LS  LS+G +SP QCW+  +    D       GA ++L EL+WREF  HLM
Sbjct: 230 IPGTDGTSNLSENLSLGEISPHQCWHAAQRALHDGK----QGAETFLKELVWREFAYHLM 285

Query: 296 AFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +        W       ++    ++AWKQG TG P +DAAMR+L   G MHNR R
Sbjct: 286 HHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q
Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHH 469
             +FD    +   W+ E    P +   A     P SW    D   +YP  I+   +    
Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRER 463

Query: 470 TLNQYY 475
            L  Y 
Sbjct: 464 ALETYK 469


>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
 gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
          Length = 433

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 137/469 (29%), Positives = 210/469 (44%), Gaps = 44/469 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQ 69
           L   R DLR+ DN  L  A    D +V+ +FI  P Q       S     F+  SLL++ 
Sbjct: 4   LFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLELD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G      +        E +           ++ N  Y     +RD+ ++++++ 
Sbjct: 63  QDLKTMGSRLHLLK----GFPEEIIPKI----NADAVYMNEDYTPFSRQRDERIKEKVKG 114

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +++     + +LL          + Y V+T F   +    V+            +     
Sbjct: 115 KLV---TCEDLLLTKKRFFLKEGKPYSVFTRFYVDVKDKPVRRP---------EVNNLKN 162

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              +    D              +                    R+ P + GT++LSPYL
Sbjct: 163 YGEMKDITDVKLLENLHFQRSSFKGGRRAALDTLNRAQTIDYSLRNFPGLPGTTRLSPYL 222

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             GVLSPR+ +  + EE                 +L WR+F+  L  + P    G  +  
Sbjct: 223 KFGVLSPREVYYSVNEEIR--------------RQLYWRDFFTLLAYYNP-YVFGHAYKR 267

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + + W  D++L  AW QG TG+PI+DA MR+LN  G+MHNR RMITA FLVK L VDW
Sbjct: 268 EYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLHVDW 327

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE+YF ++L+D D + NNG WQW ASTG D +  FRIFNP +Q K+FDP+  +I+ W+
Sbjct: 328 RWGEKYFATKLVDYDPSVNNGNWQWVASTGVDRM--FRIFNPWLQQKKFDPEAVYIKEWV 385

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           PEL ++    IH  ++          YP PIV++ +        Y  ++
Sbjct: 386 PELRDLSPADIHNVYALKVD-----GYPKPIVNYLEEVRKAREYYEKSR 429


>gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia
           amblyommii]
 gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
           AaR/Sc]
          Length = 478

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 150/486 (30%), Positives = 234/486 (48%), Gaps = 32/486 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
              ++WLR +LR+ DN++  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +              + IE +       ++  ++ +  YE + + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLVFH----GNPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182
           L        + D +L+ P  +L    + YKVYTP+ +A  +    N V A  + L   + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSY 177

Query: 183 RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCK----------EKVYYY 230
            L G +                  + +  IG       L +              ++ +Y
Sbjct: 178 NLEGKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD     GTS +SPYL  G++S R+C+ +     ++       G  +W+NELIWREF
Sbjct: 238 KTDRDFLYRNGTSTISPYLRFGLISIRECYRKAFNASLN------PGTVTWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL + GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRSRMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QG+ FDP   +I+ +LP L    T  IH     ++   +  NYP P+VD+  +    
Sbjct: 412 PYTQGQHFDPDAEYIKKYLPTLKKAQTHIIHN----INFYKMYDNYPKPMVDYVLSRAKA 467

Query: 471 LNQYYA 476
           +  +  
Sbjct: 468 IEVFKQ 473


>gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
 gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
          Length = 504

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 234/504 (46%), Gaps = 41/504 (8%)

Query: 6   AMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIY 62
            M+    + W R DLR  DN  L+ A  NS + +I V++  P         S  ++ F+ 
Sbjct: 11  KMTKFQSIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLG 69

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SLL++QK+   +G +          D IE +           +++N   E  E+ RDK 
Sbjct: 70  ESLLELQKNWEIRGSLLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQ 125

Query: 123 LEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------- 173
           + ++L              ++ P  I  +  + YKVY PF +  I  + +          
Sbjct: 126 IAEKLSKEKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQ 185

Query: 174 ------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
                             +++  +         +   +     +   ++ P  P   ++ 
Sbjct: 186 TSETAKKLTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESI 245

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KP 274
             +        +  Y + RDIP+++ TS LS  LS+G +S R  WN  +           
Sbjct: 246 KQLNSFIHSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYK 305

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            +   +W+ EL WREFY++ +  +P +  G P+        W       +AW  G TG P
Sbjct: 306 INSIDTWIKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDWFEAWGDGLTGIP 364

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IIDAAMRQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW
Sbjct: 365 IIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQW 424

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           +AS+G D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T  + +      + +   
Sbjct: 425 SASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN--- 480

Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478
           +YP PI++HK         Y   K
Sbjct: 481 SYPNPIINHKNQTSIFKELYSNIK 504


>gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 491

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 177/483 (36%), Gaps = 22/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+ D++ L  A  + + KV+ ++       +    S     FI   L ++
Sbjct: 1   MVVVWFKRDLRLEDHEPLTRAFASGE-KVLLLYSFESFWTQDPHYSDLHIDFIQEGLEEI 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L +             D   E L     ++ +  L+ + +  ++             
Sbjct: 60  QLKLKEYDTKILILS----DYIPEILKKIHSKEPIKALYSHMEAGMDITYTRDK----AV 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +   ++           +        K    +   +   +                  +
Sbjct: 112 KKWCTQNSIHWHEFAQNGLWRALKNRQKWRDHWISQMKAPIHIPSFLPTTYYTASEIDGL 171

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLS 246
           + +      +        +   G  N    L  F  +++  Y +    P      + ++S
Sbjct: 172 SAALKLVPLELNITHKKGIQIGGSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGRIS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G+LS +Q    +      +  K    +F   + L W+  +       PS+     
Sbjct: 232 PYLAWGMLSAKQVLQYVTRHQKQVSNKRNINSFL--SRLSWQAHFIQKFEMEPSIEFDAV 289

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +          AW+QG TG P++DAAMR L   G+++ RLR + ASF    L 
Sbjct: 290 -NKGYAALNKTVIPAHQLAWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHLLW 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+    +     LD +   +    Q  A  G   +   RI+NP   G   DP+G FI+
Sbjct: 349 QPWQDCSPHLAQHFLDFEPGIHFPQLQMQA--GETGINTIRIYNPVKNGLDHDPKGIFIK 406

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  +P  Y+H P              L  +YP PI+D +K+  +  +Q +  +K 
Sbjct: 407 KWVPELALIPEVYVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLRKT 466

Query: 481 SLL 483
           +L+
Sbjct: 467 NLV 469


>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
          Length = 538

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 112/491 (22%), Positives = 191/491 (38%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L     N       +FI  P       +   +  F+   L  + +
Sbjct: 7   VHWFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLEDLDR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD+ +    +  
Sbjct: 66  SLMKLNSRLFVIR----GQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRGM 121

Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      +  L     +         +     ++++ ++    L   PV +  +   V+
Sbjct: 122 NITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVGDAVS 181

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +      Y    ++            ++  GE  AL  L +  + K +     +    
Sbjct: 182 PISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLERHLERKAWVASFGKPKMT 241

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +  +         S   +++WREF+   
Sbjct: 242 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLNDLYRKIKKAV--PPLSLHGQVLWREFFYCA 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   ++ W+K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 300 ATKNPNFDRM-IGNPICVQVPWDKNPEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 358

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N+PT+YIH P +  +      K  + ++YPLP+++H    
Sbjct: 418 FGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVVS 477

Query: 468 HHTLNQYYAAK 478
            H + +     
Sbjct: 478 KHNIERMKQVY 488


>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
 gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
          Length = 539

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 196/498 (39%), Gaps = 36/498 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL      ++       V  +FI  P       + A +  F+  +L
Sbjct: 9   VHWFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L + G      +        E         RV  L +    E   + RD  ++K
Sbjct: 69  HDLDQQLQKLGSRLFVVR----GKPAEVFPRIFKSWRVELLTFETDIEPYSLARDSAVQK 124

Query: 126 RLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNLVQA 172
             +   +      S  +                        + K+  P    L + L + 
Sbjct: 125 LAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLDLPEKLKEK 184

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     + +       + +    P       FP GE  AL  + +  K++++    
Sbjct: 185 VQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPLKFPGGETEALRRMEESLKDELWVARF 244

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           ++   A       T+ LSPYL  G LS R  +++  +E +    K      S + +++WR
Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSSR-LFHQRLKEILKRQTKHSQPPVSLIGQMMWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL   GW
Sbjct: 304 EFYYTVAAAEPNFDRM-LGNVYCLQIPWEEHPDHLKAWTYGQTGYPFIDAIMRQLRQEGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YFR
Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           +++P   GK+ DPQG +IR ++PEL   P   I+ P              L  +YP  IV
Sbjct: 422 VYSPVAFGKKTDPQGNYIRKYVPELAKYPAGCIYEPWKASLSDQRAYGCVLGTDYPHRIV 481

Query: 462 DHKKACHHTLNQYYAAKK 479
            H+      + +  AA K
Sbjct: 482 KHEVVHKENIKRMGAAYK 499


>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
          Length = 501

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 110/491 (22%), Positives = 202/491 (41%), Gaps = 32/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W R DLR+ DN AL  A + ++ +   +  +++  P+   ++ +   +  F++ SL  
Sbjct: 8   IHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDI--KNRVGCNRLRFLFQSLKN 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +      +IE L     +  V  L      + + V++D+++E+  
Sbjct: 66  LDTSLRKINTRLYVIK----GKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVIEEFC 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I         +   + +          T  +   + + VQ          +     
Sbjct: 122 EANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVSDECK 181

Query: 188 VTPSNIPRFFDYPFQAI--------DPMFPIGE----QNALHILRKFCKEKVYYYVEQRD 235
            +  +   +     +          +  +P GE    +     + K      +   +   
Sbjct: 182 ASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQWVCNFEKPKSSP 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 T+ LSPY+S G LS +  +++LK+   +   K      S + +L+WRE + +  
Sbjct: 242 NSIEPSTTVLSPYISHGCLSAKLFYHKLKQV--ENGSKHTLPPVSLMGQLMWRE-FYYTA 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                            +I W K+   L+AW +G TG+P +DA MRQL   GW+H+  R 
Sbjct: 299 GSGTENFDKMVGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           + A FL + DL + W  G + F   LLD D + N G W W +++      Y+R+++P   
Sbjct: 359 MVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYK-YYRVYSPVAF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           GK+ D  G +IR ++PEL   P+++I+ P              +   YP  IVDH K   
Sbjct: 418 GKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCIIGEGYPNRIVDHDKVHK 477

Query: 469 HTLNQYYAAKK 479
             + +  AA K
Sbjct: 478 DNIQKMNAAYK 488


>gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 492

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 156/498 (31%), Positives = 211/498 (42%), Gaps = 37/498 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYA 63
           S  L W R DLR+ DN  L+AA     A V  V++  P               +  F+  
Sbjct: 4   SRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFLVE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+++Q+     G            D ++ L           + ++R  E     RD+ +
Sbjct: 63  SLVELQQRWRDAGSRLLV----VAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERDRQV 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + LQ        D   LL    +L       Y+VY PF +     +  ++  ++  P  
Sbjct: 119 ARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAPTG 178

Query: 183 RLTGPVTPSN---------------------IPRFFDYPFQAIDPMFPIGEQNALHILRK 221
            +       +                       R               GE  A   L  
Sbjct: 179 LIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRPGEAAAAGQLAV 238

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFS 280
           F    +  Y   R+ P   GTS LS  LS+G +SPRQ W   +         + +     
Sbjct: 239 FADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWCAAQAAKDLARSDEQRQAIAV 298

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDAAM
Sbjct: 299 WEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDAAM 357

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G 
Sbjct: 358 RQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGM 417

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP P+
Sbjct: 418 DPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDL---LSGDIGALERRGYPEPL 473

Query: 461 VDHKKACHHTLNQYYAAK 478
           V+HK         Y   K
Sbjct: 474 VNHKIQQARFKALYATIK 491


>gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
 gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
          Length = 454

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 216/474 (45%), Gaps = 23/474 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  L    +DLR++DN  L  A  +++ +V+ +F+              +  F+  +L 
Sbjct: 1   MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G      +     D++  +     Q    ++           RR++ L + 
Sbjct: 60  DLDAGLRERGGRLVVRR----GDAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115

Query: 127 LQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+               + PG +       + V+TP+ +A  +  ++  L +    ++  
Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSV-P 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +G  +          P      +   GE      +R + +  +  Y +++D  A   TS+
Sbjct: 175 SGLRSEPVAAVTSLAPGSPSPGLPEGGETAGRRRVRSWWRSGLADYADRQDDLAGDATSR 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSP +  +R ++           GA +++ +L WR+F+  ++A  P     
Sbjct: 235 LSPYLHFGCLSPVELVHRARKAGGA-------GADAFVRQLAWRDFHHQVLAARPDAAHA 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                      W  D   + AWK G TG+P++DA MRQL   GWMHNR R++ A FL K 
Sbjct: 288 DY---RPRGDRWRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAGFLTKT 344

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWRIG  +F+  L+DGDLA+N   WQWAA TG D+ P  R+ NP  Q +RFDP G +
Sbjct: 345 LYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRP-NRVLNPLTQARRFDPDGAY 403

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  V    +H P          L+YP PIVD ++     L ++  A+
Sbjct: 404 VRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVDLQEG----LARFRDAR 453


>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
 gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
          Length = 541

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 194/498 (38%), Gaps = 36/498 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL    +++ A      V  +FI  P       + A +  F+  SL
Sbjct: 9   VHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGANRWRFLQQSL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + K L +        +       ++       +  V  L +    E   ++RD  ++K
Sbjct: 69  VDLDKKLKELNSRLYIVR----GKPVDVFPELFERWNVQLLTFESDIEPYALQRDTTVQK 124

Query: 126 RLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNLVQA 172
                 +      S  +                        + K+  P   A+ + L   
Sbjct: 125 IASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKVLAVPEGLPDG 184

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                       +       + +    P +     FP GE  AL  +     ++ +    
Sbjct: 185 IKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRMEASLIDENWVAAF 244

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           ++   A       T+ LSPYL  G LS R   +   +E +    K      S + +L+WR
Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LLHERLKEILVRKPKHSKPPVSLVGQLLWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY  + A  P+         +  +I W K    L+AW  G TG+P IDA MRQL   GW
Sbjct: 304 EFYYTVAAADPNFDRM-LGNAYCLQIPWQKQPDHLEAWTHGRTGYPFIDAIMRQLRQEGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YFR
Sbjct: 363 IHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           +++P   GK+ DP G +IR ++PEL   P   I+ P              L ++YP  IV
Sbjct: 422 VYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYEPWKATLSAQREYGCVLGVDYPHRIV 481

Query: 462 DHKKACHHTLNQYYAAKK 479
           +H       + +  AA K
Sbjct: 482 NHDIVHKENIKRMSAAYK 499


>gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans]
          Length = 633

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 148/488 (30%), Positives = 225/488 (46%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A   +      ++ V++        HG SA +  F+Y  L  
Sbjct: 149 HWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDFMYEGLKL 208

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + +C N  D +  + S+  +Q V+ +F N +YEI+E+RRD  L K +
Sbjct: 209 IQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTI 268

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      D  ++ PG++L  + +  K++TP+ KA +  +          P   +   
Sbjct: 269 GDDIQVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLLDTNPPPAVNPA 328

Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               ++   FD P                + I   +P G   A         + +  Y  
Sbjct: 329 SAKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAA-STRMDKFLKHIPNYAA 387

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWR 288
            R  P+   TS+LSPY S G+ S R    ++ +         +S    G ++W+ E+++R
Sbjct: 388 TRSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAASAGVYAWVREIVFR 447

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P       + W  +    QAW  G TG P +DA MRQL    W
Sbjct: 448 ELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEAW 507

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL +N  GW+          P + +
Sbjct: 508 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYTV 557

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467
           FNPT Q ++ DP G FIR W+PEL NV  + + APH  L   +   L YP P VD ++  
Sbjct: 558 FNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQTK 617

Query: 468 HHTLNQYY 475
              L+++ 
Sbjct: 618 ERCLSRFK 625


>gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
 gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
          Length = 456

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 32/477 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R+DLR+TDN AL AA    +  ++A+++   E      I      +++ SL  
Sbjct: 3   SPSVVWFRDDLRLTDNPALRAALDR-EEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L ++G      +    +       +   +     +F+NR+Y   E   D  ++++L
Sbjct: 62  LGERLEERGGRLVLRRGRAAEVV----PAVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +  +   + L   P ++   A + Y VY+PF +A+ +                  G
Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARAVQKLPAPRPPMPEARKVPGFDG 177

Query: 187 -----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   ++          +   +  GE      L++F  + +  Y + RD  A   
Sbjct: 178 HVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGA 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP L  G LSP + W+           +    A  +L+EL+WREF  H+    P +
Sbjct: 238 TSNLSPRLRWGELSPYEVWHETIAH--RGSGEHAQSASGFLSELVWREFAWHVTYHSPDI 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +        +   L+ W+QG TG  ++DA MRQL   G MHNR+RM+TASFL
Sbjct: 296 ATVNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTASFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+FNP  Q K+FDP 
Sbjct: 356 IKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFDPH 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             ++R W PE                    L  N P P+VD  +     L+ Y   +
Sbjct: 416 DAYVREWAPEY-------------------LGENPPEPMVDLGETRKRALDAYAEVR 453


>gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 189/473 (39%), Positives = 273/473 (57%), Gaps = 10/473 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W R DLR+ DN ALY AC +       + I   ++W +  +S  +  F+Y ++ 
Sbjct: 1   MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++L + GI   ++ C +F +    L ++C   +V +L++N+  E  ++  DK++ K+
Sbjct: 61  SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+    C  F+ ++L+ P  I N   + YKVY+ F K+ I  +   ++  +P P IR   
Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIRKNK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +         +      P  E++AL+ L  F K K+  Y   RD   I  TS LS
Sbjct: 181 LNLIKSYNDSIKIKKKLS----PCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++IGVLS R+C N +K    D + K  SG F W +E+IWREF  HL+  Y      K 
Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            I WT+ I+W      +QAWK G TGFPIIDAAMRQL   GWMHNRLRMIT+SFLVKDLL
Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDW+IGE+YF   L+DG+ A NN  WQW +S+G  S PYFR+ NP  Q K+F     +I+
Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PEL N+P   IH P++W+ KN +  NYP  I++HK A    +N + A KK
Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKNKI--NYPNQIIEHKTAK---INFFKACKK 463


>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 440

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 208/480 (43%), Gaps = 45/480 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M       V++ W R D+R+ DN     A   SD  V+ +FI   E          +  F
Sbjct: 1   MSKK----VNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTF 55

Query: 61  IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           IY  L +++ +L +           + +   +           V  +F NR YE     R
Sbjct: 56  IYEELQRMRNNLQENHDSSL----ATFYGKPLNIWQEIIDNYEVNAVFTNRDYEPYAQER 111

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  L      + +   +F D V+     I+      Y VYTP++   ++N  +   ++  
Sbjct: 112 DLKLTSFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADN 171

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237
           +        +              +         +             +  Y + R+ P 
Sbjct: 172 LTIHYTNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIP---EYNITPTLIEDYEKTRNYPA 228

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              GTS+L  YL  GV+S R+   +                 ++++ELIWREF+  ++  
Sbjct: 229 MENGTSRLGVYLRFGVVSIRKMMKKADLANEK----------TFMSELIWREFFMTILYH 278

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P   +   F    ++IEW  +    + WK G TG+ I+DA MR+LNT G+MHNR+RM+ 
Sbjct: 279 FPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRMLV 337

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  +
Sbjct: 338 ASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKDK 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD    +I+ W+PE                     + +Y   +VDHK+A    L  Y  A
Sbjct: 398 FDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKEA 438


>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
 gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
          Length = 491

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 107/486 (22%), Positives = 187/486 (38%), Gaps = 25/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+TD++AL  A +N D  V+ ++I  P        S R   FI+ SL  
Sbjct: 3   KINVVWLKRDLRLTDHQALSVAANN-DYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLED 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+               +++E LD       +  LF +++  +       L  K  
Sbjct: 62  MNHQLACVNSQVFIFH----GNAVECLDKLMHHCPINALFSHQEIGLGCTFERDLNIKAW 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +  +           N            R  +    +         P       
Sbjct: 118 CDKQQIQWHEFQQGAVIRGAKNRTNWDKHWNRVMRAPVFSVNLDKVNWVGTCPEQLAYML 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
            +P           + +  M   G   AL  L  F   +   Y      P    T+   L
Sbjct: 178 FSPPES------WRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S RQ + ++   +       +    ++ + L W   +       P +    
Sbjct: 232 SPYLAWGNISLRQVYQQVLAHWNVKG--FRRSLIAFSSRLHWHCHFIQKFESEPDIEFYC 289

Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +  +   + +   AWK+G TG P+IDA MR L   G+++ R+R +  SFL  
Sbjct: 290 MNRTYDRLLAESCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTH 349

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q +  DP G 
Sbjct: 350 HLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEHDPDGE 407

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL N+P   +  P +  +   +      +  Y  PI+D +++  +   + +  
Sbjct: 408 FIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSCYLYPIIDLERSAKNARERLWGW 467

Query: 478 KKQSLL 483
           K +  +
Sbjct: 468 KARKDV 473


>gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 487

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/478 (26%), Positives = 217/478 (45%), Gaps = 24/478 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ DN AL  A    +A V+ VF+  PE+  Q         ++  SL Q
Sbjct: 4   STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      + S+   S++ L    +  + +++F+N  Y+   + RD+ +++ L
Sbjct: 63  LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     ++ L   P  + + + + +  +  F    +    +     LP     L  
Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLPPTRSLLAF 179

Query: 187 PVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                                    +   +  G  NA   L  F +  +  Y   + +  
Sbjct: 180 AGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMVD 239

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSP+L  G LS R+ +  ++    +   +     +     +L  +  R++ R++
Sbjct: 240 GSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRYI 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +       W  D  L +AW+QG TG+P++DA MRQ+   GW+HNR+R
Sbjct: 300 CFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRIR 358

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD DL ++  GWQ+ +    D     R+ +  I+
Sbjct: 359 VIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQIE 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           G ++DP+G ++R WLPEL+ +PT++IH P     +       +L  NYP P+V+   A
Sbjct: 419 GYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476


>gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 504

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/496 (19%), Positives = 191/496 (38%), Gaps = 30/496 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T   ++++VW + DLR++D++ L  A  N D   + ++   P        + R   F
Sbjct: 1   MPDTIKQAINIVWFKRDLRLSDHQPLVDAF-NHDLPCLLIYTFEPFMLADSHYNERHWRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + + L +                I+ LD       +  ++ +++  ++     
Sbjct: 60  VWQSLQDMNQQLLRFNGQVYMFSMP----MIDLLDEISQTFEIKNIYSHQEIGLHNSFER 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                    R   +        P G+++            +++ +   +   + +   + 
Sbjct: 116 DKTV----ARWCNQQPVSWQQSPTGAVVRGRKNRQAWDQHWQQVMNSPIAIPNWQQCQLQ 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-- 238
            +           P   +      D     G + A  IL  F   +   Y      P+  
Sbjct: 172 KL------DNYQEPTLDNAIMAHNDQFQIGGPKAARTILSSFLTHRGKDYQRSISSPSLS 225

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +S +Q +      + ++    K+     L  +    ++ H M  +
Sbjct: 226 RTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHFMQKF 285

Query: 299 PSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            S C  +        +++           +Q W  G TG PIIDA MR L   G+++ R+
Sbjct: 286 ESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYINFRM 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  SF+   L + W+       +  LD +   +    Q  AS     +   R++NP  
Sbjct: 346 RAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQAS--VTGINTIRLYNPVK 403

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKAC 467
           Q +  DP+G FIR W PEL N+P +YIH P        +        +YP P++D  +A 
Sbjct: 404 QSQDQDPRGEFIRLWCPELTNLPNEYIHQPWQQPPMEAIFNDIILGRDYPEPMIDLTQAS 463

Query: 468 HHTLNQYYAAKKQSLL 483
               ++ ++ ++Q  +
Sbjct: 464 QTARDRLWSYREQPQV 479


>gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
           KM-6054]
          Length = 441

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 216/455 (47%), Gaps = 29/455 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +V    DLR+ DN AL+AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L + G      +     D+ E       +   T +           RR++ L + 
Sbjct: 60  ELDAALRRTGSRLTVRE----GDTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  R +         +PPG++       Y V+TP+ +A  Q   +A L +    A+R   
Sbjct: 116 LGER-LHVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRAPLPAPR--ALRTPD 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + +P       +  DP             R +       Y +  D  A   TS LS
Sbjct: 173 DLPSAPLPTATPTARRLPDPGEAA-------ARRTWQHWHADDYADLHDALADDATSHLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS  +  +  ++          +GA ++  +L+WR+F+  ++A  P+      
Sbjct: 226 PYLHFGCLSANELAHLAEQRGG-------TGAEAFARQLVWRDFHHQVLAARPAAAHSDY 278

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  + W+ D     AW+ G TGFP+IDAAMRQL   GWMHNR R++TASFL K L 
Sbjct: 279 ---RPRPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKSLH 335

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR G  +F+  L+DGDLA+N   WQW A TG D+ P  R+ NP +Q  R DP+GT++R
Sbjct: 336 HDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRP-NRVLNPLVQADRHDPEGTYVR 394

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            WLPEL ++PTQ IH P   L       +YP PI+
Sbjct: 395 RWLPELAHLPTQDIHRPWQSLLC---PADYPDPII 426


>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 493

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 157/495 (31%), Positives = 213/495 (43%), Gaps = 37/495 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHFIYASLL 66
           L W R DLR+ DN  L AA     A V  V +  P               +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   + G            D    L           + ++R  E     RD+ + + 
Sbjct: 66  ELQQRWREAGSRLLV----VAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAVARA 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ        D   LL    +L       Y+VY PF +     + +++  ++  P+  + 
Sbjct: 122 LQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSGLID 181

Query: 186 GPVT---------------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                                         R               GE  A   L  F  
Sbjct: 182 LEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRPGEAAAAEQLATFVA 241

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLN 283
             +  Y   R++P++ GTS LS  LS+G LSPRQ W   +E    +    +      W  
Sbjct: 242 GPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAITVWEQ 301

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREFY+  +  +P +  G P+ P   +  W  +      WK G TG PIIDAAMRQL
Sbjct: 302 ELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAAMRQL 360

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           N  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  
Sbjct: 361 NQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           P  RIFNP  Q  +FD +G +IR WLPEL +V T  +    S          YP P+V+H
Sbjct: 421 P-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDL---LSGEIPALERRGYPEPLVNH 476

Query: 464 KKACHHTLNQYYAAK 478
           K         Y   +
Sbjct: 477 KSQQARFKALYATIR 491


>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 625

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/526 (21%), Positives = 199/526 (37%), Gaps = 60/526 (11%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------ 59
           M +H + W R  LR+ DN +L  +   +D+ V  V+I  P       +   +        
Sbjct: 1   MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59

Query: 60  -----------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                      F+  SL  +  SL +        +        +             ++ 
Sbjct: 60  LTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIR----GQPTDVFPRLFKAHPTVAVYV 115

Query: 109 NRQYEINEVRRDKLLEKRLQHRV------------ICKSFDDSVLLPPGSILNHALQMYK 156
            +++ I+ +  +   E   + R                      L     I+        
Sbjct: 116 PQEWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLDKIIELNGGQSP 175

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---------- 206
           +     + LI  +   ++ +  + A  +    TP +      Y   +++           
Sbjct: 176 LTYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSS 235

Query: 207 -MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWN 261
            ++P GE  AL  L +  + K +    +R            + LSPYL  G LS R  + 
Sbjct: 236 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 295

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           +L + +  +         S   +L+WREF+       P     +   P   +I W+++  
Sbjct: 296 KLTDLYRKVKKNSSPPL-SLYGQLLWREFFYTAATNNPCFDKMEN-NPICVQIPWDRNPE 353

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   L
Sbjct: 354 ALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELL 413

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D + N G W W + +      +F  + P   G+R DP G +IR +LP L   P +YI
Sbjct: 414 LDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYI 472

Query: 441 HAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + P +  +      K  + ++YP P+V+H +A    + +     +Q
Sbjct: 473 YDPWNAPESVQKAAKCLIGVHYPKPMVNHAEASRLNIERMKQIYQQ 518


>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 471

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 209/474 (44%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
            I  +      +  P  +       Y+VYTPF KA+    V        R        ++
Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+       +       GA  +L EL WREF  HL+   P +    
Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFLAEIARRPGPEALAFLEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466


>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
 gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
          Length = 493

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 152/498 (30%), Positives = 230/498 (46%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68
            + W R DLR  DN  L+ A  NS + +I V++  P+        S  ++ F+  SL+++
Sbjct: 6   SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIEL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK+   +G            D IE +           +++N   E  E+ RDK + ++L 
Sbjct: 65  QKNWEIRGSRLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 120

Query: 129 HRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------------- 173
                        ++ P +I  +  + YKVY PF +  I  +                  
Sbjct: 121 KEKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAK 180

Query: 174 ------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                       +++  +         +   +     +    + P  P   ++   +   
Sbjct: 181 QLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSF 240

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFS 280
                +  Y + RDIP+++ TS LS  LS+G +S R  WN  +            +   +
Sbjct: 241 IHSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINSIDT 300

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W+ EL WREFY++ +  +P +  G P+        W       +AW  G TG PIIDAAM
Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDWFEAWGDGLTGIPIIDAAM 359

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW+AS+G 
Sbjct: 360 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 419

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T  + +      + +   +YP PI
Sbjct: 420 DPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPKPI 475

Query: 461 VDHKKACHHTLNQYYAAK 478
           + HK         Y   K
Sbjct: 476 ISHKNQTSIFKELYSNIK 493


>gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH
          Length = 488

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 195/497 (39%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 1   MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++  L   G                 L        +  + ++ +    E    +
Sbjct: 59  IENLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAE 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174
            +++      I         L     L   +         ++     +      L +   
Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231
               +P     G +           P          G QNA     +           Y 
Sbjct: 175 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++    + +       +  + EL+WR++
Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNK--STYWMIFELLWRDY 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   + +       +      +W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 293 FRWISRKHGATLFRAGGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 470

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 471 DSAKENETIYMRAKAAS 487


>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
          Length = 525

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 184/500 (36%), Gaps = 37/500 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    VF+  P       +   +  F+   L  +  
Sbjct: 26  VHWFRKGLRLHDNPSLKEGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  +    +  
Sbjct: 85  SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCKEL 140

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+        +     + ++ ++   +     V A  +    T
Sbjct: 141 GISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASMNPPEPPVSTVTAACIGNAYT 200

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P        Y    ++           P++  GE  AL  L +  + K +     R    
Sbjct: 201 PLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 260

Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNELIW 287
                   + LSPYL  G LS R  + +L + +  +                S   +L+W
Sbjct: 261 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLLW 320

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+ +  A   S        P   +I W+K+   L  W  G TGFP IDA M QL   G
Sbjct: 321 REFF-YCAATKNSNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEG 379

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +      +F
Sbjct: 380 WIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFF 438

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
             + P   G++ DP G +IR +LP L N PT+YIH P +         K  +   Y LP+
Sbjct: 439 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCVIGKEYSLPM 498

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H K     + +     +Q
Sbjct: 499 VNHNKTSRINIERMKQVYQQ 518


>gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)]
          Length = 566

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 177/553 (32%), Positives = 255/553 (46%), Gaps = 88/553 (15%)

Query: 11  LVWLRNDLRITDNKALYA--------------------------ACH-----NSDAKVIA 39
           L+W R DLR+ DN AL                            A       ++  K+ A
Sbjct: 13  LMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPKIHA 72

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +F+ T EQW +H +S  Q  FI+ +L  +  SL +Q  I     + ++FD  IE + ++C
Sbjct: 73  LFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVANFC 132

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKV 157
            Q  +T +  N +YE+NE++RD  +E+RL+ + I  S      + PP ++  +   MYKV
Sbjct: 133 QQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETMYKV 192

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN------------------------- 192
           +TPF K     L  +         +    P                              
Sbjct: 193 FTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLRLFSKAYFET 252

Query: 193 ---IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                       +  +  F  GE  A   L+ F  E V  Y   RD P+++ TS+LS YL
Sbjct: 253 ESVNQDHQAQLLKNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEATSRLSAYL 312

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKP---------------------KSGAFSWLNELIWR 288
           ++G +SPR C+ + K+    +                         +     W++EL WR
Sbjct: 313 TVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQRWISELAWR 372

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIG 347
           +FYRH++A  P +  G  F    +              W QG TG P+IDAAMR LN  G
Sbjct: 373 DFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAAMRCLNQTG 432

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G D+ PYFR
Sbjct: 433 FMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVGTDAAPYFR 492

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVD 462
           I NP  Q K  D +  FI+ WLPEL  V    +H                +++YP P+V+
Sbjct: 493 IMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANVDYPQPMVE 552

Query: 463 HKKACHHTLNQYY 475
           HK+A  + + Q+ 
Sbjct: 553 HKQARLYAIGQFK 565


>gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
          Length = 517

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 178/485 (36%), Gaps = 30/485 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VWL+ DLR++D++ L  +  +     +  ++  P          R   FI+ S+  +
Sbjct: 16  VNIVWLKRDLRLSDHQPLSESIQS--GLTLLYYVFEPLLIADPHYDKRHWRFIWQSIEDI 73

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              LS        +    F D++  L+    +  +T LF + +  +           +  
Sbjct: 74  NTQLSAFNAQIYVY----FGDAVAGLNEIQQRFNITGLFSHEEVGLLSTFERDKAVNKWC 129

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   + +         N            +  L Q  +  +         RL   +
Sbjct: 130 KAQNIVWHESASGAVTRGKKNRNNWDKDWRKIMKAELCQPALSCNTLLSKQCLERLPQFI 189

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246
            P +            D M   GE  A  +L+ F   +   Y      P       S+LS
Sbjct: 190 LPVSWSTP-------DDFMLKGGELWAQKMLQSFLNGRGKNYHFDISKPQASRKSCSRLS 242

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +S RQ +  +  +        K    +  + L W   +         +     
Sbjct: 243 PYLAWGNISLRQFYQIILMKRPQ--NGWKRPIDALASRLHWHCHFIQKFESEHQMQWRPV 300

Query: 307 FIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              ++     +          L  WK   TG+P++DA M  L   G+++ R+R +  SFL
Sbjct: 301 NRAYSNFSYPDLHCGLSVETRLNKWKTAQTGYPLVDACMLCLIKTGYINFRMRAMLVSFL 360

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              LL+DWR+G  Y     LD +   +    Q+   +G       R++NP  Q    D  
Sbjct: 361 CHHLLLDWRLGVSYLAKLFLDFEPGIHYP--QFQMQSGVTGTNIIRVYNPVKQSLEKDKD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR WLP+L+ +P + IH P         L +  L   YPLPIVD  +      +  +
Sbjct: 419 GLFIRTWLPQLSELPNEIIHTPWQLSPMEQQLYQCQLGETYPLPIVDINETGKIARDLLW 478

Query: 476 AAKKQ 480
             +K+
Sbjct: 479 GFRKR 483


>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
 gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
          Length = 526

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 195/497 (39%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 39  MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 96

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++  L   G                 L        +  + ++ +    E    +
Sbjct: 97  IENLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAE 152

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174
            +++      I         L     L   +         ++     +      L +   
Sbjct: 153 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 212

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231
               +P     G +           P          G QNA     +           Y 
Sbjct: 213 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 272

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++    + +       +  + EL+WR++
Sbjct: 273 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNK--STYWMIFELLWRDY 330

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   + +       +      +W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 331 FRWISRKHGATLFRAGGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 389

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 390 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 448

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 449 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 508

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 509 DSAKENETIYMRAKAAS 525


>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
          Length = 545

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 187/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN  L A    +      +FI  P       +   +  F+   L  +  
Sbjct: 10  VHWFRKGLRLHDNPTLKAGLKGA-TTFRGIFIIDPWFAGSSNVGINKWRFLLQCLEDLDT 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +          L         T L + +  E     RD  +    +  
Sbjct: 69  TLRKLNGRLFVVR----GQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I++       +     + ++  +    L + PV    +    T
Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184

Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +      Y    ++            ++  GE  AL  L    + K +     R    
Sbjct: 185 PIDEDHDEKYGVPTLEELGFETENLAPSIWKGGESEALARLEHHLERKAWVASFGRPKMT 244

Query: 239 ----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R+ +  L + +  +   P     S   +L+WREFY   
Sbjct: 245 PQSLYPSRTGLSPYLRFGCLSARRFFAELNDLYRKIKKSP--APLSLHGQLLWREFYYTA 302

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+K++  L  W  G TGFP IDA M QL   GW+HN  R
Sbjct: 303 ATNNPKFDHME-GNPICVQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVAR 361

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 362 HAVACFLTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVR 420

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      K  +  +YP+P+VDH K  
Sbjct: 421 YGRKADPNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQS 480

Query: 468 HHTLNQYYAAKKQ 480
              L +     +Q
Sbjct: 481 QANLMRMKQVYQQ 493


>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 492

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 207/495 (41%), Gaps = 37/495 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFIYASLL 66
           L W R DLR+ DN  L AA     A V  V++  P       +   ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFLVESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   + G      Q     D +  L         + + ++R  E     RD+ + K 
Sbjct: 66  ELQERWREAGSRLLVLQ----GDPLTLLPQLAALLDSSTVVWSRDVEPYARERDRGVAKA 121

Query: 127 LQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           LQ        D               G          + +    + L  + V A      
Sbjct: 122 LQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTVAAPTDLQD 181

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCK 224
           + A +     +            Q                      GE  A+  L  F  
Sbjct: 182 LTAEQQQAIRSTETALGRLWADGQQALQRLQTEHGFAGMDLCPCRPGEVAAVDQLAVFAD 241

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLN 283
             +  Y   R+ P   GTS LS  LS+G LSPRQ W   +         + +     W  
Sbjct: 242 GPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWCAAQAAKDLARSDEQRQAIAVWEQ 301

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDAAMRQL
Sbjct: 302 ELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDAAMRQL 360

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  
Sbjct: 361 QQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP P+V+H
Sbjct: 421 P-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDL---LSGEIGALERRGYPEPLVNH 476

Query: 464 KKACHHTLNQYYAAK 478
           K         Y   K
Sbjct: 477 KIQQAKFKVLYATIK 491


>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
 gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
          Length = 538

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 118/492 (23%), Positives = 190/492 (38%), Gaps = 30/492 (6%)

Query: 11  LVWLRNDLRITDNKALY---AACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL+        +  K  V  +FI  P       + A +  F+  SL
Sbjct: 9   VHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGANRWRFLQQSL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L          +       ++       + +V  L Y    E   V RD  +++
Sbjct: 69  SDLDQQLRALNTRLFVVR----GKPVDIFPGLFERWQVQLLTYETDIEPYAVLRDAAVQQ 124

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLP 178
               + +      S  +    ++          T  +         L + L +       
Sbjct: 125 LAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKVLNKPKKLPDG 184

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR----KFCKEKVYYYVEQR 234
           +  +  +       + +    P       FP GE  AL  +            +   +  
Sbjct: 185 MQPLADSDIYDYPTLEQLVKRPEDLGINKFPGGESEALRRMEASLADEQWVAKFEKPKTA 244

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  T+ LSPYL  G LS R  ++   +E +    K      S + +L+WREFY  +
Sbjct: 245 PNSLEPSTTVLSPYLKFGCLSAR-LFHERLQEILARQPKHSKPPVSLVGQLLWREFYYTV 303

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            A  P+         +  +I W +    L+AW  G TG+P IDA MRQL   GW+H+  R
Sbjct: 304 AAAEPNFDRM-LGNAYCLQIPWQEQPEHLEAWAHGRTGYPFIDAIMRQLRQEGWIHHLAR 362

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G+  F   LLD D A N G W W +++      YFR+++P  
Sbjct: 363 HAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVA 421

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            GK+ DP+G +I+ ++PEL   P + I+ P              L  +YP  IV+H    
Sbjct: 422 FGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLGEQRDYGCVLGSDYPHRIVNHDVVH 481

Query: 468 HHTLNQYYAAKK 479
              + +   A K
Sbjct: 482 KENIKRMSDAYK 493


>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
 gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
          Length = 540

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 124/501 (24%), Positives = 193/501 (38%), Gaps = 36/501 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62
           S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A +  F+ 
Sbjct: 6   STLVHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +   L +        +        +         RV  L +    E   + RD  
Sbjct: 66  QTLEDLDNQLRKLNSRLFVVR----GKPADVFPRIFKSWRVEILSFETDIEPYSMTRDAA 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169
           ++K  +   +      S  +                        + ++  P      + L
Sbjct: 122 VQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGSPEKL 181

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                                  + +    P +     FP GE  AL  +    K++++ 
Sbjct: 182 TNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKDEIWV 241

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   A       T+ LSPYL  G LS R  + +L E       K      S + +L
Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTEII-KRQSKHSQPPVSLIGQL 300

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL  
Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFYQ- 418

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ DPQG +IR ++PEL+  P+  I+ P              L  +YP 
Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYPH 478

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
            IV H+      + +  AA K
Sbjct: 479 RIVKHEVVHKDNIKRMGAAYK 499


>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 789

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 170/477 (35%), Gaps = 44/477 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  + +
Sbjct: 53  VHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 111

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 112 NLRQLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 167

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I      S  L     +          T  +   I   + A  +    PAI L      
Sbjct: 168 NIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPE--PAITLAAIGRA 225

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                        +  +  +G +                                  ++ 
Sbjct: 226 VTPQCDDHDDKYGVPTLEELGFETEGLKPPI--------------------------WVG 259

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
               +  +    L+ +   +         S   +L WREF+       P+        P 
Sbjct: 260 GETEALARLERHLERKAWKIKK--AYPPLSLHGQLFWREFFYCAATKNPNFDKM-AGNPI 316

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369
             +I W++++  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W
Sbjct: 317 CVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISW 376

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G + F   LLD D + N G W W + +      +F  + P   G++ DP G +IR +L
Sbjct: 377 EEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKADPNGDYIRRYL 435

Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P L N PT+YIH P +  +      +  +  NYPLP+V+H  A    + +     +Q
Sbjct: 436 PVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQVYQQ 492


>gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 488

 Score =  257 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 124/497 (24%), Positives = 193/497 (38%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 1   MANALVWYRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  ++  L   G                 L        +  + ++ +    E    +
Sbjct: 59  IESLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAE 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174
            +++      I         L     L   +         ++     +      L +   
Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIR 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231
               +P     G +           P          G QNA     +           Y 
Sbjct: 175 IQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++    +         +  + EL+WR++
Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVR--CYEEERVENKSTYWMIFELLWRDY 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   +         +      +W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 293 FRWISRKHGVTLFRTSGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKEYPHPIVDLF 470

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 471 DSAKENETTYMRAKAAS 487


>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 471

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 210/474 (44%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E +   RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119

Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
            I  +      +  P  +       Y+VYTPF KA+    V        R L      ++
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLLSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R        + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+       +       GA  +L EL WREF  HL+   P +    
Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFLAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466


>gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 492

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 153/506 (30%), Positives = 215/506 (42%), Gaps = 58/506 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI   +Q R  G +AR   +
Sbjct: 17  MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAAR--WW 70

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 71  RDRSLTLLVDALATHGVPLLRRS----GDPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ +L+ +     S    +L  P  + + A   YKVYTPF KA      ++  R    
Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQ 233
              +LTGP TP       D P            +                  +   Y + 
Sbjct: 187 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 246

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP+L  G +S  + W  +        I     A  +  EL+WR+F  H
Sbjct: 247 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATD-AQVFRKELLWRDFAWH 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------------------AWKQGYTG 332
            +   P +        +        +    +                     AW+ G TG
Sbjct: 306 RLYALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTG 365

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D ASN   W
Sbjct: 366 IPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNW 425

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE                     
Sbjct: 426 QWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------- 466

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  YP PIVD K++    L+ Y A K
Sbjct: 467 TPEYPAPIVDLKESRREALDAYEAVK 492


>gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group]
 gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group]
          Length = 719

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 132/499 (26%), Positives = 216/499 (43%), Gaps = 39/499 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL + G       + +   D++  L         T LF+N  Y   +          ++ 
Sbjct: 80  SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYGSIDPEFQIDPLSLVRD 136

Query: 130 RVIC----------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +           +SF+  +L  P  +++     + ++ PF    +   +      L  
Sbjct: 137 HRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLP 194

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYV 231
           P     G +     P          +          +  G QNA   L  F    +  Y 
Sbjct: 195 PKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYS 254

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIW 287
             R       TS LSPYL  G LS R+ +++++ +      +           +L  +  
Sbjct: 255 VNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGL 314

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR+L   G
Sbjct: 315 REYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATG 373

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 374 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR 433

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           I NP ++G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV
Sbjct: 434 IDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIV 493

Query: 462 DHKKACHH---TLNQYYAA 477
           +   A       L++ +  
Sbjct: 494 ELDAAKTRLQDALSEMWEL 512


>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 471

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 209/474 (44%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
            I  +      +  P  +       Y+VYTPF KA+    V        R        ++
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+       +       GA  +L E+ WREF  HL+   P +    
Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQEIAWREFGWHLLYHTPEIARRN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + ++ E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFVAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPGPVVGLAEGRERALAAY 466


>gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 500

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 172/486 (35%), Gaps = 27/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D+  L  A  +S   V+ ++   P        +AR   F++ SL  
Sbjct: 4   PINIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLAD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++                I  L     Q  +  LF +++  +N            
Sbjct: 63  LNQQLARFKTQIYIFSEPM----IALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVSAW 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H       +           +               +     Q            L   
Sbjct: 119 CHSNKIVWHETQTGAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQLNTVYLTDYQELKLD 178

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQL 245
                +   F             G + A  ++  F  E+   Y +    P++     S+L
Sbjct: 179 ERYQMVDENFQL----------GGPKQARALIASFFVERGVGYQKGISSPSLSRLHCSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304
           SPYL+ G +S RQ +++    +       +    ++++ L W   +         +    
Sbjct: 229 SPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRIEFEP 288

Query: 305 -KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                         +  H L  W+ G TG PIIDA MR L   G+++ R+R +  SF+  
Sbjct: 289 LNMAYLHYPYRTDEQVEHDLALWQHGNTGIPIIDACMRCLKHTGYINFRMRAMLVSFVTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + W+          LD +   +    Q  AS     +   R++NP  Q +  DP G 
Sbjct: 349 HLNISWQQASMPLAQYFLDFEPGIHYPQIQMQAS--VTGMNTIRLYNPIKQSQDQDPDGV 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR W PEL N+P++YIH P             DL  +Y   ++D   A      + +  
Sbjct: 407 FIRTWCPELKNLPSEYIHQPWLQPPMEAIFNDFDLERDYHPSMIDLDIAAQIARERLWGF 466

Query: 478 KKQSLL 483
           +++  +
Sbjct: 467 RERKDV 472


>gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 465

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 205/477 (42%), Gaps = 24/477 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R  DN  L AA       V+ VF+   + +    + ARQ  F    + ++
Sbjct: 1   MQLFWHRRDPRTRDNVGLAAAART--GTVVPVFVYDTDLFGT--MGARQRAFFLRHVKRL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++   + G            D  + L     +     +FYN  Y      R + +E  L+
Sbjct: 57  KERYREFGSDLVVR----AGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +             ++L    ++ + Y    +   +          P P       +
Sbjct: 113 GFGV------ETNARTDAVLVDPGRLEERYANHGRFHDEWETVPKPEPSPEPDADALVNM 166

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI------PAIQGT 242
                    D        +   G + A      F +  +  Y + RD             
Sbjct: 167 RDEKTVSEIDPDIDPDIDLPATGYRAARERFDGFLEHGIRSYADTRDDLARAVEAPTHAV 226

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++SPYL+ G +  R+ W    + F       +     + +EL WRE   HL+ + P + 
Sbjct: 227 SRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYYTPDLA 286

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +   +  +  +I W +D    +AW +G TG+P++DA MRQLN  G++HNR R + ASFL 
Sbjct: 287 VAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVVASFLT 345

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR G  YF +QL+D D ASN+G WQW ASTG DSV   RIF+P  Q  ++D   
Sbjct: 346 KHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSVD-VRIFDPVAQMAKYDADA 404

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           TF++ ++PEL +VP + I    +    ++  L+  YP PIVD  +        +  A
Sbjct: 405 TFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEGYERAQRVFEEA 461


>gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 486

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 100/486 (20%), Positives = 170/486 (34%), Gaps = 47/486 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V+LVW + DLR+ D+  L  A       V+ +++  PE +     S      +  SLL 
Sbjct: 6   PVNLVWFKRDLRVADHAPLREAARR--GAVLCLYVYEPEVYGAETFSGAHLELLNQSLLS 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L+ +G    +       +    L++      +  L+ + +             +  
Sbjct: 64  LEAELAARGGRLVFR----VGEMPAVLEALHRDLPLAALYAHEETGDWASFERDRRVRA- 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                          P   ++  A            A+     +        P+ +    
Sbjct: 119 ---WARSRGVPFYEFPSAGVVRGARLPPPARLVAPAAVPAERFRTPWELGLAPSPQNLPT 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +      +         +  G  +    LR                      S+LSP
Sbjct: 176 AGEAAARAALESFLTVRGRGYLGGISSPERALRYA--------------------SRLSP 215

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS------WLNELIWREFYRHLMAFYPSV 301
           YL++G LS RQ +       ++L     +G+        +   L WR+ +   + +YP  
Sbjct: 216 YLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAFIQKLEWYPRT 275

Query: 302 CMGK---PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                   F    E +        L+A+  G TG+P++DA MR L   GW++ R+R +  
Sbjct: 276 EFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGWLNFRMRALLV 335

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR          LD +   +    Q    +G   V   RI++P  Q +  
Sbjct: 336 SFACYHLWLDWRPVGRLLARGWLDYEPGIHWP--QLQMQSGVTGVHAPRIYSPAKQARDH 393

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472
           DP G FIR W+PEL  +PT  +  P +            +  +YP PIVD K A      
Sbjct: 394 DPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAPIVDPKAAYAEARR 453

Query: 473 QYYAAK 478
              A +
Sbjct: 454 TLGAWR 459


>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis]
          Length = 491

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 114/490 (23%), Positives = 181/490 (36%), Gaps = 24/490 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R  LR+ DN A   A       +  +FI  P   +   I   +  F+  SL  + 
Sbjct: 1   SIIWFRKGLRLHDNPA-LLAAAAGADHLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDS----IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            S   +G      +  + +         L     +  VT+L +    E    RRD  + +
Sbjct: 60  ASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAVRQ 119

Query: 126 RLQH---------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             +                    +    G          K+      A     + A    
Sbjct: 120 LAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIAAPSWP 179

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                +  +  V       +                      L        +   +    
Sbjct: 180 QAAALVSSSVAVPSLTDIGYPPTGTTPFKGGESAALARMADYLSDKGWVCAFEKPKGNPA 239

Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 T+ LSPYL  G LSPR    +L++ + +          S   +L+WREF+    
Sbjct: 240 AFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWREFFTLCG 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A  P+        P  ++I W  D   + AW+   TG+P IDA M QL   GWMH+  R 
Sbjct: 300 AAIPNFDRM-AGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL   W  G+  F   L+D D + N   WQW +++   S  YFR+++P   
Sbjct: 359 SVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YFRVYSPIAF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           GK++D  G +IR +LP L ++P +YI+ P +            +  +YP PIVDH+ A  
Sbjct: 418 GKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIVDHQAAMK 477

Query: 469 HTLNQYYAAK 478
             + +  AA 
Sbjct: 478 ENMARMKAAY 487


>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
 gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
          Length = 473

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 154/486 (31%), Positives = 226/486 (46%), Gaps = 28/486 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   + +   L+W R DLR++D+ AL AA  N+   VI VFI        + + A     
Sbjct: 1   MSDKSPI---LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---NALGAAPKWR 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   +  +  SL          +     D++E L +   +     ++++R Y+ + V+RD
Sbjct: 54  LGLGVGALADSLEGVSSRLILRE----GDALEALQALIKETGAGTVYWSRLYDPDSVQRD 109

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175
             +++ L +  I  KSF   V+  P ++   A   YKVYTPF   +    ++  + A   
Sbjct: 110 SKIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSD 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                +   +  +    +    D     +     +GE+ A   L  F    V  Y   RD
Sbjct: 170 LPAPESWPDSDALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRD 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           IP   GTS LS  LS+G +SP QCW+  +    D       GA ++L EL+WREF  HLM
Sbjct: 230 IPGTDGTSNLSENLSLGEISPHQCWHAAQRALHDGK----QGAETFLKELVWREFAYHLM 285

Query: 296 AFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +        W       ++    ++AWKQG TG P +DAAMR+L   G MHNR R
Sbjct: 286 HHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q
Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHH 469
             +FD    +   W+ E    P +   A     P SW    D   +YP  I+   +    
Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRER 463

Query: 470 TLNQYY 475
            L  Y 
Sbjct: 464 ALETYK 469


>gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
 gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
          Length = 473

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 193/461 (41%), Gaps = 26/461 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              DLR+ DN  L AA  ++D +V+ +F+          IS  +  F+  SL  +  +L 
Sbjct: 28  FTRDLRVHDNPVLAAAAASADGRVVPLFVLDGGIL--PRISETRRRFLEESLADLDAALR 85

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
             G            +         +      L  +     +E +       R     + 
Sbjct: 86  ALGGRLVLRSGDVVAEVCR--VVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAELH 143

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
                  + PPG +  +    + V+TP+ +   +  ++A   +  +    + G   P++ 
Sbjct: 144 LHDQVHTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRAPASAPRLTVPDIAGLELPTSA 203

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
                   +        GE       +++  + V  Y +  D  A   TS+LSPYL  G 
Sbjct: 204 DSTLSGGLR-------GGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLHFGC 256

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +S  +   R           P SG  ++L +L WR+F+  +MA  P             +
Sbjct: 257 VSATELAARA------SRDHPGSGTEAFLRQLCWRDFHHQVMAARPDAAHT----DLRPR 306

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
             W  D   L AW  G TG PI+DA MRQL   GWMHNR R+ITA FL K L +DWR G 
Sbjct: 307 GAWVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWRSGA 366

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
            +F   LLD D+A+N   WQW A TG D+ P  R+ NP  Q  R+DP G ++R ++PEL 
Sbjct: 367 AHFAHHLLDADVANNILNWQWVAGTGMDTRP-NRVMNPLRQATRYDPSGEYVRRYVPELA 425

Query: 434 NV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHT 470
           ++     +H P          L+YP PIV+    K      
Sbjct: 426 DLSDAADVHQPWRLGPVALKELDYPAPIVEVDGGKVGRRLA 466


>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
 gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
          Length = 437

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 223/473 (47%), Gaps = 47/473 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ DN ALY A   S  KV  VFI       +       +  FI+  L  + 
Sbjct: 9   IFWFRRDLRLQDNHALYEALR-SGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q+     ++     D+  +  +    +     +++N  YE    +RDK +   L+ 
Sbjct: 68  KQLEQQSSGIAFYH----DEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRDKEISDFLRQ 123

Query: 130 RVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         +     +L    + Y V+TP+R   +  L ++ L++ P          
Sbjct: 124 YHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLAALRS 183

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSP 247
               IP   +  F A    FP           K  K  +  Y + RDIPA +  TS LS 
Sbjct: 184 HWQTIPTLKELGFVATKQTFP----------SKSYKAVIGDYHQTRDIPADEKGTSHLSV 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S R      ++              +WLNELIWREFY  ++  +P   + K F
Sbjct: 234 HLRFGTVSIRSLIKDARQA----------SEKTWLNELIWREFYMMILWHFPE-TVNKAF 282

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               ++I W  +     AW QG TG+P++DA MRQLN  G+MHNR+RM+ ASFL K LL+
Sbjct: 283 KSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLCKHLLI 342

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+  + + 
Sbjct: 343 DWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPKLVYAKR 402

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           W+PEL++                     YP PI++HKKA    L  Y  A K 
Sbjct: 403 WIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALKD 437


>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
          Length = 525

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 183/500 (36%), Gaps = 34/500 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L+AA  +       +F+   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +        +       +  + KL + +  E     RD  ++   + 
Sbjct: 65  NQFKKYGGKLIMLK----GKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACRE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             + C+ +    L  P +++     +  +        +  +         V    +T   
Sbjct: 121 IGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVGDPPRPVPDVDMSGITFGT 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P    + F    +   P           I            ++Q               
Sbjct: 181 LPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQMQQRLAVEHETFRKG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                      +     LSP L  G LS R  +  +++ F  +     S A     +LIW
Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLSSAHFITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE++  +    P+           +    + +   LQ W +G TGFP IDAAMRQL   G
Sbjct: 301 REYFYTMSVNNPNYGQMADNPICLDIPWKHPEGDELQRWIEGRTGFPFIDAAMRQLRAEG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405
           W+H+ +R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ +  
Sbjct: 361 WLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
                P   G+R DP G ++R ++PE+  +P  YI+ P              +  +YP P
Sbjct: 421 GECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEPWKAPLDVQTRASCIIGKHYPAP 480

Query: 460 IVDHKKACHHTLNQYYAAKK 479
           +V+H  A     N     ++
Sbjct: 481 LVNHIVAAQRNRNAMKELRQ 500


>gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740]
 gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING
           ENZYME [Wolinella succinogenes]
          Length = 447

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 130/471 (27%), Positives = 214/471 (45%), Gaps = 31/471 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN+    A      +V+ +FI             R+  +IY  +++++
Sbjct: 3   SLIWFRRDLRLEDNRTFEQAS----GEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L  +G+         + + ++ L     +Q  ++LF ++ Y+   + RD+   + L  
Sbjct: 59  SELRARGLDLAIF----YGEPLKILSRL-KEQGFSRLFASQDYDSYALSRDEAARELLD- 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
              C+   D+ L  P  +L      Y +++ +    ++ L +          + L   + 
Sbjct: 113 ---CRFVLDNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSE----GHYAKGLDLPKKLA 165

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPY 248
           P  IP           P+  +     L   R              RD    + TS LS +
Sbjct: 166 PYPIPAPPSLESMGFSPLPLLESLKILPQKRLEEFSSKITRYALDRDSLEAEATSGLSLF 225

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G L  R+   RLK    + +         +  +++WREFY  L+  +P     + F 
Sbjct: 226 LRFGTLGVREVIRRLKVWQEEGIKV-----APFYRQILWREFYAMLLYHFPHSER-EDFK 279

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P    + W++    L+ W++G  G P++DA MR+LN  G+MHNR RM+ ASFL K+L + 
Sbjct: 280 PMQ--MRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTKNLHLH 337

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP  Q  +FDP+G +++ W
Sbjct: 338 WSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGEYVKRW 397

Query: 429 LPELNNVPTQYIHAPHSWLDK-NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL  + TQ      S  ++   L   Y  PIV  K++           +
Sbjct: 398 IPELRGISTQN----WSSEERWEGLKERYLAPIVSAKRSAQEAKAMQNTLR 444


>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
 gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
          Length = 433

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 220/479 (45%), Gaps = 51/479 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK      + + WLR DLR+ D+ ALY A       V+ +FI       +  +   +  F
Sbjct: 1   MKKE----ISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTF 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           IY ++ ++ + L+Q                 +       + +V  +F N  YE     RD
Sbjct: 56  IYNTIKELNEQLAQHDSSIVVKH----GSPEKAWTELMEEYQVKSVFTNHDYEPYAAERD 111

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L + L+   I   ++ D V+     I+    + Y V+TP+ K  ++ L    ++  P+
Sbjct: 112 DSLAEFLRSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPI 171

Query: 180 PA-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              ++    +   +IP   D  F+A    FP  + +      +          + RD P 
Sbjct: 172 KKYLKHLLKIKRQHIPSLSDMGFEASAQKFPSEDFSRKLDAYE----------KLRDFPG 221

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              T+ +  +L  G +S R                    A  WL+EL WR+FY  ++  +
Sbjct: 222 ADATTHIGMHLRFGTVSIR----------HAAAQAKTQQAEKWLSELAWRDFYMMILWHF 271

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P   +   F P    I+W  +    +AW QG TG+P++DA MRQLN  G+MHNR+RM+ A
Sbjct: 272 PH-TVNSAFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVA 330

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DW+ GE YF  +LLD ++ASN GGWQWA   GND+ PYFR+FNP +Q K+F
Sbjct: 331 SFLSKHLLIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKF 390

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP   +I  WLPE      +  H P               PIV+H  A    L  + AA
Sbjct: 391 DPDFKYIDKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430


>gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 452

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 31/471 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D     +   + + +V+ +FI           + R+  FI+  +L ++ 
Sbjct: 4   VLWFRRDLRVDD-----SMLLSVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+         +   +E   SY      + ++ +  Y+     RD+ +   L   
Sbjct: 59  KLKALGLDLALF----YGTPLEVF-SYLKTLGFSDVYASVDYDAYAKERDEKVGAIL--- 110

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               + +DS L  P  +L      Y V+TPF KA  Q   Q  +        RL      
Sbjct: 111 -RFHALNDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTKATQRLCEFDCS 169

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK------EKVYYYVEQRDIPAIQGTSQ 244
           +      +        M  IG       L +  K       K+  Y   RD  A   TS 
Sbjct: 170 ALWHIEKESKTALHVKMENIGFIPLHVKLLEPHKALEAFTCKLDAYAHDRDFLACDATSH 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +  R+    L                 +  +LI+REFY +L+  +P +   
Sbjct: 230 LSVHLRFGTIGIREVVRYLVALKKQG-----HTTEPFFRQLIFREFYAYLLYHFPHLAWK 284

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                      + ++    + +    TG+P++DAA+R+L   G MHNR RM+  SF  K 
Sbjct: 285 NY----KYTPPYEENQESYERFITAQTGYPLVDAAVRELLETGLMHNRARMVVGSFFTKH 340

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ GE +F   LLD D ++N   WQW A TG D  PYFRIFNP  Q  +FD +  +
Sbjct: 341 LLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDPQPYFRIFNPYAQSLKFDKEALY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           I+ +LP+L ++P+  +H   S+L  +++  +YP PI+ H+KA    LN + 
Sbjct: 401 IKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQHEKARKRFLNAFA 449


>gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
 gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
          Length = 477

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 223/482 (46%), Gaps = 26/482 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I           S+R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLVMEE----GDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------------ADLRS 176
            I        LL     +                 +++ +                D+ +
Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +         +   +P   I P  P        +     ++K+Y Y   RD 
Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETLLENFINEKKIYSYNSARDF 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P+  GTS LS  L  G +S R+ WN       DL  +       +W  EL+WREFY+H +
Sbjct: 241 PSHNGTSFLSASLRFGTISIRKVWNATLNLNSDLENQGNYLSIETWQKELVWREFYQHCL 300

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR RM
Sbjct: 301 FHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCRM 359

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 360 IVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQA 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           K+FDP   +I++W+PEL+ V    +    +    N    +Y  PIV+HK       + Y 
Sbjct: 419 KKFDPICEYIKYWIPELSKVSNSEL---LNGDISNLEKNDYSSPIVNHKIQQRLFKSLYA 475

Query: 476 AA 477
             
Sbjct: 476 EI 477


>gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/484 (24%), Positives = 196/484 (40%), Gaps = 27/484 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA    +  V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +     +++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPV 179
           +++L    I     +  L   P  I     + +  ++ + K  +   +++         +
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175

Query: 180 PAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P       V   +I                +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PISTAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                   TS LSPYL  G +S R+ +   + + +       S      +  +     R 
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA---MRQLNTIGWMH 350
            +  Y S+              ++     +  ++   T    +        +    G MH
Sbjct: 296 YLGIYVSISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGYGCMH 355

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ N
Sbjct: 356 NRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDN 415

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PI+D  
Sbjct: 416 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPILDID 475

Query: 465 KACH 468
            A  
Sbjct: 476 TARE 479


>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
 gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
          Length = 512

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 187/494 (37%), Gaps = 33/494 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LRI DN +L     N+      +FI  P       +   +  F+   L  +  
Sbjct: 7   VHWFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSDLDN 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        E L     Q   T   +    E     RD+ ++      
Sbjct: 66  SLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSEM 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+N       +     + L++ +   +     +    L    T
Sbjct: 122 GISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGNAFT 181

Query: 190 PSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P        +    ++             ++  GE  AL  L+   + K +     +   
Sbjct: 182 PIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAFIASFGKPKM 241

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + L+PYL  G LS R  ++ L E +  +         S   +L+WR+F+  
Sbjct: 242 TPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKKIRKSQ--PPLSLHGQLLWRDFFYC 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +I W+K+   L  W  G TG+P IDA M QL   GW+H   
Sbjct: 300 ASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCIA 358

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W + + +    +   + P 
Sbjct: 359 RHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCS-SFYQEFIHCYCPV 417

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             G++ DP G +IR ++P LNN+P QYIH P    +         + ++YPLPIV+H  A
Sbjct: 418 RFGRKVDPNGDYIRRYIPALNNMPNQYIHEPWLAPESIQFSANCIIGIDYPLPIVNHINA 477

Query: 467 CHHTLNQYYAAKKQ 480
               L +   A +Q
Sbjct: 478 SKINLERMKLAYQQ 491


>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 499

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 165/490 (33%), Positives = 223/490 (45%), Gaps = 37/490 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L A    + A V  VF+  P       +S  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLADNLGLAA-AARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      +     D  E L           + +NR  E +   RD+ + + L+  
Sbjct: 66  RWREAGSRLLLLR----GDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185
                +  D +L+PP ++   A   Y+VY PF ++  + + QA   +    A   +    
Sbjct: 122 GCKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLIDL 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---------------- 229
            P       R        ++ +   G+                                 
Sbjct: 182 DPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRPGEAAAAAQLAAFADGP 241

Query: 230 ---YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNEL 285
              Y   R++PA  GTS LS  L  G LSPRQ W   +++      + +      W  EL
Sbjct: 242 LLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITVWEQEL 301

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREFY+  +  +P +  G P+ P      W  D     AW  G TG PI+DAAMRQLN 
Sbjct: 302 AWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPIVDAAMRQLND 360

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR RMI ASFLVKDL+VDWR GE  FM  L+DGDLA+NNGGWQW+AS+G D  P 
Sbjct: 361 SGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASSGMDPKP- 419

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK- 464
            RIFNP  Q  RFDP+ T+IR WLPEL+ V T  +        +      YP PIVDHK 
Sbjct: 420 LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLER---RGYPGPIVDHKL 476

Query: 465 -KACHHTLNQ 473
            +A    L+ 
Sbjct: 477 QQARFKALHA 486


>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
 gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
          Length = 533

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 186/498 (37%), Gaps = 36/498 (7%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL     A + +     V  +FI  P       + A +  F+  +L
Sbjct: 9   VHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQTL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L +        +       ++         RV  L +    E   ++RD  ++K
Sbjct: 69  HDLDQQLRKLNSRLFVVR----GKPVDVFPRVFKSWRVELLTFETDIEPYALQRDAAVQK 124

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----------------ALIQN 168
             +   I      S  +    ++          T  +                   L + 
Sbjct: 125 LAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKVLELPEKLAKK 184

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
            +                P     + R  D            G +     LR       +
Sbjct: 185 ALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLGPNKFPGGETEGLRRMKESLRDELWVARF 244

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                        T+ LSPYL  G LS R  +++  +  +    K      S + +L+WR
Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFHQQLKAILKRQSKHSQPPVSLIGQLLWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY  + A  P+         +  +I W + +  L+AW  G TG+P IDA MRQL   GW
Sbjct: 304 EFYYTVAAAEPNFDRM-LGNVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YFR
Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +++P   GK+ DPQG +IR ++PEL   P   I+ P              L ++YP  IV
Sbjct: 422 VYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIV 481

Query: 462 DHKKACHHTLNQYYAAKK 479
            H+      + +  AA K
Sbjct: 482 KHELVHKENIKRMSAAYK 499


>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
 gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
          Length = 546

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 135/508 (26%), Positives = 203/508 (39%), Gaps = 37/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAK--VIAVFIATPEQWRQHGISA 55
           M+A T  +  + W R  LR+ DN AL         +  K  V  +FI  P       + A
Sbjct: 1   MEAKTK-ATLIHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGA 59

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  + K L Q        +       IE          V  L +    E  
Sbjct: 60  NRWRFLQQTLDDLDKQLRQLNSRLYVVR----GKPIEVFPRLFKSWNVELLTFESDIEPY 115

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADL 174
              RD  ++K  +   I      S  +    ++    L    +      AL++ L  A +
Sbjct: 116 AQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKV 175

Query: 175 RSLPVPAIRLTGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
              P     LT P                +  +    P +    +FP GE   L  +   
Sbjct: 176 LDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRMEDS 235

Query: 223 CKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             ++++    ++   A       T+ LSPYL  G LS R  + RLKE       K     
Sbjct: 236 LNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKEILAK-HPKHSQPP 294

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +++WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA
Sbjct: 295 VSLVGQVLWREFYYTVAAAEPNFDRM-LGNVYCLQIPWQEHPEHLEAWTYGRTGYPFIDA 353

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W ++
Sbjct: 354 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSA 413

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
           +      YFR+++P   GK+ DPQG +IR + PEL N P + I+ P     +        
Sbjct: 414 SAFFHQ-YFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEPWLATLQAQREYGCV 472

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +   A K
Sbjct: 473 LGEDYPHRIVKHELVHKENIKKMSEAYK 500


>gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 712

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 218/487 (44%), Gaps = 25/487 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        ++  SL  ++ 
Sbjct: 18  VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL + G       + +   DS+  L         T LF+N  Y+   + RD  L++ L  
Sbjct: 77  SLHRLGAGKLVTRRSA---DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTS 133

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I     ++ L   P  + +   Q + ++ PF    +          LP   I      
Sbjct: 134 EGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLS 193

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G QNA   L  F    +  Y   R       TS
Sbjct: 194 MCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTS 253

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P
Sbjct: 254 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP 313

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 314 -CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 372

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FD
Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFD 432

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A       
Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEA 492

Query: 471 LNQYYAA 477
           L++ +  
Sbjct: 493 LSEMWQL 499


>gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
          Length = 452

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 211/448 (47%), Gaps = 30/448 (6%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   Q  +++ SL ++  SLS  G      + +      E + S  ++ R   +F+NR+Y
Sbjct: 1   MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              +   D  ++K L  R I  S  +  L   P ++       ++V++ + +A  ++   
Sbjct: 57  SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFF 116

Query: 172 ADLRSLPVPAIRLTGPVTPSNIP----------RFFDYPFQAIDPMFPIGEQNALHILRK 221
                     I         +                   + +   +  GE+ A H L  
Sbjct: 117 PPCPLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQLEA 176

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIK 273
           F +     Y   RD PA + TS+LSPYL  G +S RQ W               V +   
Sbjct: 177 FIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRIDDA 236

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                  + +EL WREF  +L+           F    + + W  D+  L+AW++G TG+
Sbjct: 237 KNESLNKFFSELGWREFSYYLLYHC-EPLHQFNFRRQFDAMPWRTDAKALRAWQRGKTGY 295

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR+L   GWMHNR+RM+TASFL K LL+DWR GE +F   L+D D ASN  GWQ
Sbjct: 296 PLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGWQ 355

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--- 450
           W + +G D+ PYFRIFNP +QG++FD  G + R W+PEL+ +P + +H+P +   +    
Sbjct: 356 WVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALRE 415

Query: 451 ---DLSLNYPLPIVDHKKACHHTLNQYY 475
               L  +YP PIVDH+ A    L+   
Sbjct: 416 ASIALGASYPFPIVDHQVARARALSSVE 443


>gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 490

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 194/490 (39%), Gaps = 30/490 (6%)

Query: 7   MSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           MS++     +VWL+ DLR++D++AL+ A       ++ +++           SAR   FI
Sbjct: 1   MSINKKELAVVWLKRDLRLSDHEALHNALATKKRCLL-MYVFEDILLSDFHYSARHFDFI 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S++++   L          +       IE LD+   Q  +    +          RDK
Sbjct: 60  KQSIVEMNNQLKLFNTRVLCLK----GSVIEALDTLSEQYSIALYSHQETGIGLTFERDK 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +++      +  +      +  G  L +  +   ++T      + N    D + +    
Sbjct: 116 SVKQWADKNGVHWNEFLQQGVFRG--LPNRKKWIHLWTAHMNRPLFNFSPEDDQFISAEL 173

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--I 239
           I               +          P GEQ A   L  F + +   Y +    P    
Sbjct: 174 I-----CEFEKEFEVMELNTPKSQWFQPGGEQKASRYLNSFFERRYLNYQKHISKPDLAR 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S+LSPY++ G +S RQ   R +EE             S+ + L W+  +        
Sbjct: 229 KSCSRLSPYIAWGNISMRQVLQRTQEE--KERGNKSRALVSFGSRLRWQAHFIQKFEMEC 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+   K        +   K    L+AW+ G+TG P++DAAMR L T G+++ R+R +  S
Sbjct: 287 SME-YKSINKGYHALVKEKRVDYLKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F++  L   W+    +   Q LD +   +    Q  A  G   +   RI+NP   G   D
Sbjct: 346 FVIHQLWQPWQSISGFLARQFLDFEPGIHFPQIQMQA--GETGINTLRIYNPVKNGLEHD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           PQG F+  W+PEL  +P +++H P         L    L  +YP PIVD           
Sbjct: 404 PQGKFVSKWIPELQKLPERFLHTPWEITPLESSLYDFKLGEDYPHPIVDIDTTRDKASQI 463

Query: 474 YYAAKKQSLL 483
            +  +K SL+
Sbjct: 464 LWNLQKNSLV 473


>gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 561

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 177/496 (35%), Gaps = 49/496 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQWRQHGISARQSHFIYA 63
           +++++W + DLR+ D+  L AA           ++ ++   P          R   F+Y 
Sbjct: 15  TINILWFKRDLRLRDHAPLQAAIAMGQRAPKRPLLLLYCFEPSLIADPNYDLRHWRFVYE 74

Query: 64  SLLQVQKSLS--------QKGIVFQYHQCSNFDD--------------------SIEWLD 95
            L  ++K L+          G +        FDD                      + L 
Sbjct: 75  CLADLRKQLATVPPPAPSDTGRLVHEWLPFEFDDQADDHQPETGLPTVWVFHREVTDVLT 134

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
           +   Q  +  +F  ++  +           +       +           + +   L+  
Sbjct: 135 ALQTQFTIGSIFSYQETGLAVTYDRDKAVAQFC-----RQQGIGWQEFQNNGVFRRLKNR 189

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
             +    +  +Q   Q    +   PA            P       +      P GE N 
Sbjct: 190 DTWAAQWQQTMQQPQQHPDLTAWYPADVPPDWFEAERGPDLPAAWQRPNPSFQPGGEYNG 249

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLI 272
              L  F +E++  Y      P       S+LSPYL+ G LS RQ +   ++      L 
Sbjct: 250 HRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIRQVYQAQQQAAKKPQLA 309

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
             +    ++ + L W   +         +          + +  N +     AW+ G TG
Sbjct: 310 GLRRQLAAFASRLRWHCHFIQKFEREERMEFENV-NRAFDAVPKNVNPDHYAAWRDGRTG 368

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR L   G+++ R+R +  SFL   L   W+ G  +      D +   +    
Sbjct: 369 YPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHWQEGGWHLARLYTDFEPGIHYA-- 426

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447
           Q    +G       RI+NP  Q +  DPQG FI+ W+PEL N PT YIH P +       
Sbjct: 427 QLQMQSGMTGTNTIRIYNPVKQSQEHDPQGVFIKQWVPELANCPTAYIHQPWTMPPLEQA 486

Query: 448 -DKNDLSLNYPLPIVD 462
            +   + ++YP PI+D
Sbjct: 487 MEHFQIGIDYPAPIID 502


>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
          Length = 552

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 196/493 (39%), Gaps = 32/493 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W+R DLR+ DN +L  A   SD  V  +++   +     GI      F+  SL  V 
Sbjct: 29  AIHWVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSLEDVD 87

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       + + + L +    E     +D  +    Q 
Sbjct: 88  DSLRKLNSRLFVVR----GQPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRLLAQE 143

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +   S     P  I+ H      +      A++++L         +    L G  
Sbjct: 144 SGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLLGGCS 203

Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +      +   ++             ++  GE  AL  L +  + K +    ++   
Sbjct: 204 TPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAWIASFEKPKV 263

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LSPR  ++RL E +  +    K    S   +L+WREF+  
Sbjct: 264 TPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKVK--CKDPPISLYGQLLWREFFFT 321

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + A  P+        P   +I W  +   L+ W+QG TGFP IDA M QL   G +H+  
Sbjct: 322 VAANNPNFDQMDE-NPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLKQEGXIHHLA 380

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R     FL + DL + W  G + F   LLD + + N G W W + +      +F    P 
Sbjct: 381 RHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMWLSCS-AFFQQFFNCICPV 439

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G ++R +LP L   P +YIHAP +  +      +  +  +YP PIVDH K 
Sbjct: 440 GFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPRPIVDHHKV 499

Query: 467 CHHTLNQYYAAKK 479
               L +     K
Sbjct: 500 STANLEKMRNVFK 512


>gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 476

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 148/506 (29%), Positives = 210/506 (41%), Gaps = 58/506 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI      +   +      +
Sbjct: 1   MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFIDED---QPRALGGAARWW 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 55  RDRSLTLLVDALATHGVPLLRRS----GDPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ +L+ +     S    +L  P  + + A   YKVYTPF KA      ++  R    
Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQ 233
              +LTGP TP       D P            +                  +   Y + 
Sbjct: 171 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 230

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP+L  G +S  + W  +        I     A  +  EL+WR+F  H
Sbjct: 231 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATD-AQVFRKELLWRDFAWH 289

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------------------AWKQGYTG 332
            +   P +        +        +    +                     AW+ G TG
Sbjct: 290 RLYALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTG 349

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D ASN   W
Sbjct: 350 IPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNW 409

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE                     
Sbjct: 410 QWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------- 450

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  YP PIVD K++    L+ Y A K
Sbjct: 451 TPEYPAPIVDLKESRREALDAYEAVK 476


>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
 gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
          Length = 494

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 212/483 (43%), Gaps = 26/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN     A  +    V+ +FI   E+  +         ++  SL+ 
Sbjct: 4   STTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++ G      +      S+  L       + T++FYN  Y+   + RD  ++  L
Sbjct: 62  LNSSLAKLGCPLLMQKS--RGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     ++ L   P  + +     Y  +  F +  +    + D   LP   +    
Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPA 179

Query: 187 PVTPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                +             F       +   +  G  NA   L  F    +  Y + R  
Sbjct: 180 EPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNRGK 239

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYR 292
                TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+ R
Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+HNR
Sbjct: 300 YLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  P 
Sbjct: 359 IRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPH 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           ++G+RFDP G ++R WLPEL+ +PT++IH P +           +L  NYP P+V+   A
Sbjct: 419 VEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAA 478

Query: 467 CHH 469
              
Sbjct: 479 RER 481


>gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
          Length = 440

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 217/469 (46%), Gaps = 44/469 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R DLR+ DN  L  A    D +VI VFIA P Q       S     F+  SLL++ 
Sbjct: 4   IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +KG          F ++ + +  +  +     ++ N  Y    + RD+ + K  + 
Sbjct: 63  DELRKKGSRLNVF----FGEAEKVVSRFFNKVDA--IYVNEDYTPFSISRDEKIRKVCEE 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             I     +  LL P S+ +H           +  + +              +  +  VT
Sbjct: 117 NGIEFKAYEDYLLTPKSLFHHRNFTSFYNEVSKVKVRE-----------PETMEGSFDVT 165

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S++   F   F+ I+     G +     L     +       +RD PA     +LSP+L
Sbjct: 166 DSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDF-----RRRDYPAENNNYRLSPHL 220

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R+ +   K            G   ++ EL WR+F+  L  + P V  G  +  
Sbjct: 221 KFGTISMREAYYTQK------------GKEEFVRELYWRDFFTLLAYYNPHV-FGHCYRR 267

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VDW
Sbjct: 268 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDW 327

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF ++L+D D A NNG WQW ASTG D +  FR+FNP  Q ++FDP+  FI+ W+
Sbjct: 328 RWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEWV 385

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL +VP   IH+ +           YP PIV+  +  ++  ++Y   K
Sbjct: 386 EELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
 gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
          Length = 479

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 214/481 (44%), Gaps = 28/481 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR++D+ AL AA       ++ VFI          + A     +   L    K
Sbjct: 11  ILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAVQA---LGAAPKWRLGLGLEAFAK 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            LSQ G      Q      +++ L+S         +F++R YE   + RD  ++  L  +
Sbjct: 67  GLSQIGSRLILRQ----GAALDVLESLIRDTGAGTVFWSRGYEPVSIARDTRIKSALTGQ 122

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLT 185
            I        L   P +I   + Q ++++TP  +A+    V          +       +
Sbjct: 123 GIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRAVQGRDVPTPEPGPARLMAPEGWPGS 182

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + R      +   P    GE  A   L  F      Y  EQRD     GTS L
Sbjct: 183 DQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFLHRIDQYA-EQRDRVDKTGTSDL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YLS+G + PR  W+R++            GA ++L +L+WREF  HLM  +P +    
Sbjct: 242 SEYLSLGEIGPRMIWHRVQNAARTGA----PGADAYLRQLVWREFAYHLMYHWPHLLTDN 297

Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              P  +   W  D      +AW+Q  TG P++DA +RQ+   G MHNR RMI AS+L K
Sbjct: 298 W-KPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRMHNRARMIVASYLTK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  W++G ++F   L D D A+N  GWQW A +G D+ PYFRIFNP  Q  RFDP   
Sbjct: 357 HLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIFNPQTQRVRFDPDEG 416

Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR W+ E    P     A     P SW    D    YP P+V  K+     L  + + K
Sbjct: 417 YIRRWIAEGQARPEATALAYFDAIPRSWGLSPDDP--YPEPVVGLKQGRTRALRAFESRK 474

Query: 479 K 479
           K
Sbjct: 475 K 475


>gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
 gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
          Length = 494

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 196/471 (41%), Gaps = 23/471 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLL 66
            L   R DLR+ DN  L  AC  SD +V+  FI  P Q         S     F+  SL 
Sbjct: 36  SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDNNAFFSEHAFAFLVRSLK 94

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++++ L ++G      +     D    L        ++ +  NR Y     RRD  L   
Sbjct: 95  ELRRRLRERGGRLFVFE----GDPAAILSELISAGDISAVHVNRDYTPFARRRDDQLRSV 150

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +         +++LL     +  +      +T          V        V       
Sbjct: 151 CREEGARFQSSNALLLTEPEEVQPSGGGA-YHTFTPFRRRAQSVSTPPPRGKVEGPFCDR 209

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            ++    P      +   D     G    +  L     E +  Y + R  PA +  + LS
Sbjct: 210 ALSVETTPLETYDRYPTDDLRAKGGRAEGIEFL--EEIETLGAYRDARHQPAKESLTALS 267

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +   G +S R+    +K+ F D            +++  WR+FY HL+   P       
Sbjct: 268 AHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLT-TS 318

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+ ASFL KDLL
Sbjct: 319 LRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDLL 378

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q ++ DP+  +I+
Sbjct: 379 VDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYIK 436

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  A
Sbjct: 437 RWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 486


>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
 gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
          Length = 527

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/496 (24%), Positives = 198/496 (39%), Gaps = 41/496 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSH 59
           + L+W R  LR+ DN +L AACH S   V  VF+  P                +   +  
Sbjct: 1   MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQ 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + ++LS +G            + I+ +     + R+ KL +    E   + R
Sbjct: 60  FLLESLQDLDRNLSSRGSKLLLVH----GNPIQVIPELLDKWRIRKLCFEFDTEPYALDR 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSL 177
           D  +++  + + I      S  +    +L   +  +    +  F K L+           
Sbjct: 116 DAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKVYY 229
            +P       +    +P   +  +      F            +    +  +    +   
Sbjct: 176 AIPPTGDLHGIKVVPVPTLEELGYADFHEDFSPFRGGETVALTRLEDSLANEKWVCEFEK 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
                       T+ LSPYL  G LS R  ++R+KE +            S   +L+WRE
Sbjct: 236 PKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAKSFTSPPV-SLEAQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+        +        P  ++I W  D  LL AW+ G TG+P IDAAM QL   GWM
Sbjct: 295 FFYTAAYATANFDKM-VGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + D+ V W  G + F   L+D D + NNG W W +++   +  Y RI
Sbjct: 354 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           ++P    K++D QG +I+H+LPE       +I+ P           K  +  +YP P++D
Sbjct: 413 YSPITFAKKYDRQGNYIKHFLPE-------FIYEPWKAPAEIQRKAKCIIGKDYPTPVLD 465

Query: 463 HKKACHHTLNQYYAAK 478
           H  A      +  AA 
Sbjct: 466 HAAASKICRERMGAAY 481


>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
 gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
          Length = 500

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 213/474 (44%), Gaps = 30/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D  AL AA    +  VI +++   +  RQ  +      +++ SL  +  
Sbjct: 38  LLWFRQDLRLADQAALGAAVQ--EGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDD 95

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +KG      Q     + ++ +     +    ++     YE      +K     L  R
Sbjct: 96  DLRKKGSRLVLRQ----GNCVDQIVQIAEETGARRVHALHHYEPWWRNAEK----ALGKR 147

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLTG 186
           +     D ++LLPPG++       Y++YTPF +A++ ++  A+       +  P     G
Sbjct: 148 LDLCLHDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPSRIDAPGQWPKG 207

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                         + A         +           ++   Y   R++P+ +G+S+LS
Sbjct: 208 DSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEAADYDRARNLPSREGSSRLS 267

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +SP Q W ++     +          ++L ELIWR++    +   P+      
Sbjct: 268 PHLHFGEVSPAQVWRQVAGAPGNA--------TTFLKELIWRDYAHTQIWAMPAYGSENA 319

Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             P  + + W           AWK G TG+PI+DA MRQL T GWMHNR+RMI ASFL+K
Sbjct: 320 -RPAFDAMPWRDLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFLIK 378

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR G  +F   L+D   A+N+  WQW A +G D+  + RI  P  Q ++F+    
Sbjct: 379 HLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFEA-AD 437

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL ++    IH P      +    +YP   +DH++     L  +   
Sbjct: 438 YIRKWVPELAHLNDDVIHDPE---AHDARPADYPAKCIDHREGRERALAAWRRI 488


>gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7]
 gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase
           [Sulfolobus tokodaii str. 7]
          Length = 432

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 217/469 (46%), Gaps = 44/469 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R DLR+ DN  L  A    D +VI VFIA P Q       S     F+  SLL++ 
Sbjct: 4   IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +KG          F ++ + +  +  +     ++ N  Y    + RD+ + K  + 
Sbjct: 63  DELRKKGSRLNVF----FGEAEKVVSRFFNKVDA--IYVNEDYTPFSISRDEKIRKVCEE 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             I     +  LL P S+ +H           +  + +              +  +  VT
Sbjct: 117 NGIEFKAYEDYLLTPKSLFHHRNFTSFYNEVSKVKVRE-----------PETMEGSFDVT 165

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S++   F   F+ I+     G +     L     +       +RD PA     +LSP+L
Sbjct: 166 DSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDF-----RRRDYPAENNNYRLSPHL 220

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R+ +   K            G   ++ EL WR+F+  L  + P V  G  +  
Sbjct: 221 KFGTISMREAYYTQK------------GKEEFVRELYWRDFFTLLAYYNPHV-FGHCYRR 267

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VDW
Sbjct: 268 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDW 327

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF ++L+D D A NNG WQW ASTG D +  FR+FNP  Q ++FDP+  FI+ W+
Sbjct: 328 RWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEWV 385

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL +VP   IH+ +           YP PIV+  +  ++  ++Y   K
Sbjct: 386 EELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
 gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
          Length = 474

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 146/478 (30%), Positives = 226/478 (47%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR+ DN AL AA   S A V+ V+I      +   + A     +   L    +
Sbjct: 8   IWWIRRDLRLCDNPALTAAAE-SGAPVLPVYILDE---QDEALGAAPKFRLGLGLDHFGQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G      +      ++  L     +     + ++R Y+   +RRD  +++ L+ +
Sbjct: 64  ELAKAGSCLILRR----GKALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQTLKEQ 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            +  KS    +L  P ++   A  MYKVYTPF KA+       L+ A  +         +
Sbjct: 120 GVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPAPGKIAAPDNWPAS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  AL  L  F ++ V  Y  +RD PA   TS L
Sbjct: 180 EDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAEDATSGL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SP + W++              GA  +L E++WREF  HLM   P +    
Sbjct: 240 SENLAWGEISPHRMWHQGSAAMERGS----QGAEHFLKEIVWREFAYHLMYNSPHILTES 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W E     K +  +QAW++G TG+  +DAAMR+L   G MHNR RMI ASFL K L
Sbjct: 296 WREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           +  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FR+FNP+ Q ++FDP+G + 
Sbjct: 356 MTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLEKFDPEGAYT 415

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             W+ E  + P +     +  AP SW     ++     P+V  +      L  Y+ A+
Sbjct: 416 SRWIAEGQDTPPRTALDFFDAAPLSWDLSAGMAPA--EPVVSLQAGRDRALTAYHEAR 471


>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
 gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
          Length = 465

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 213/475 (44%), Gaps = 25/475 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+TD+ AL AA       VI VFI         G+ A     +   +     +
Sbjct: 1   MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAVA---GLGAAPKWRLGLGIGAFDDA 56

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           L +K       +     D++E L     +     ++++R Y+     RD  +++ L+   
Sbjct: 57  LREKSSRLILRK----GDALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLTG 186
           V  +SF   ++  P ++       YKVYTPF  A+    V A L +            + 
Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPLSAPKNLTAPDTWPRSD 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +    +          + P   +GE++A   L  F    V  Y   RD+P + GTS LS
Sbjct: 173 DLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGTSNLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++G +SP QCW+  +    D       GA ++L EL+WREF  HLM   P +     
Sbjct: 233 ENLALGEISPHQCWHAGQRALHDGK----QGAETFLKELVWREFAYHLMHHSPRILTDNW 288

Query: 307 FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              W        +    ++AWK G TG P +DAAMR+L   G MHNR RMI AS+L K L
Sbjct: 289 REEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASYLTKHL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           +  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD    + 
Sbjct: 349 MCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDKNRDYT 408

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
             W+ E    P           P  W      S +YP  IV   +     L  Y 
Sbjct: 409 SRWIAEGRANPHADALRFFDAIPKRWNLSA--SDDYPDRIVALDEGRERALENYK 461


>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
          Length = 584

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 200/465 (43%), Gaps = 27/465 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+ 
Sbjct: 108 VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 166

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L  +G+              E L S         ++ +++    E+  ++L
Sbjct: 167 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 222

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   L+  V+  S   S  L   +     L                    D+ +    ++
Sbjct: 223 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 282

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD-IPAI 239
                +           P   I+    +  G +          ++ +  Y   R+ +   
Sbjct: 283 ESKCTIRICIRTPTLLGPPPNIEDWGSVSRGMRFIGGEAAALSRDLLKVYKATRNGMLGA 342

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ SP+L+ G LSPR  +  +K    +         +  L ELIWR+++R L   Y 
Sbjct: 343 DYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--STYWVLFELIWRDYFRFLSVKYR 400

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +        P   +  W++D  + +AW+ G TG+P+IDA M++L+  G+M NR R I  S
Sbjct: 401 NSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCS 459

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+   Q K +D
Sbjct: 460 FLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYD 518

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           P+G ++  WLPEL  +P    + P           +Y   IV  K
Sbjct: 519 PEGEYVAFWLPELQALPNDKRNFP---------GKSYINQIVPLK 554


>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
 gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
          Length = 463

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 142/497 (28%), Positives = 216/497 (43%), Gaps = 62/497 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS----------------DAKVIAVFIATPEQWRQHG 52
             LVW R+DLR  D+ AL AA  ++                 A V+A+F+   E      
Sbjct: 2   TSLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRP 61

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +      +++ SL+ ++  L   GI     + +  D  ++ ++++     V  + +NR+Y
Sbjct: 62  LGGAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRY 117

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              E   D  ++     R +      + L   P +I       Y+V+TPF KA +     
Sbjct: 118 GGPERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQP 177

Query: 172 A----------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                         +L   A + +  +    +          I   +  GE  A  +L  
Sbjct: 178 REPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDAAHELLAD 237

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           F  + V +Y  QRD P+   TS+LSP+L  G +SP+  W+  +    D+         ++
Sbjct: 238 FLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDV--------ETF 289

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L+E+ WREF  H +   P +        +        D   L AW++G TG P++DA MR
Sbjct: 290 LSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPLVDAGMR 349

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G MHNR+RM+ ASFL K+LL+DWRIGEE+F   L+D D ASN   WQW A  G D
Sbjct: 350 ELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWVAGCGAD 409

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFR+FNP  Q K+FDP   ++R W                      D       PIV
Sbjct: 410 AAPYFRVFNPETQRKKFDPDERYVRRW--------------------GADDGR---EPIV 446

Query: 462 DHKKACHHTLNQYYAAK 478
           D  +     L  Y   K
Sbjct: 447 DLAETRKAALAAYEHTK 463


>gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor]
          Length = 690

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 219/488 (44%), Gaps = 25/488 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        +I  SL ++ 
Sbjct: 17  SVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLD 75

Query: 70  KSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            SL + G       + +   D++  L         T +++N  Y+   + RD  L++ L 
Sbjct: 76  ASLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLA 132

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I     ++ L   P  +++   Q + ++T F    +          LP   I     
Sbjct: 133 AEGIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDL 192

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    F+   +      +   +  G QNA   L  F    +  Y   R       T
Sbjct: 193 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 252

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +
Sbjct: 253 SLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNH 312

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS    +P +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 313 PS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 371

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS    RI NP  +G +F
Sbjct: 372 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKF 431

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH--- 469
           DP G ++R W+PEL  +PT++IH P             +L  NYPLPIV+   A      
Sbjct: 432 DPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQE 491

Query: 470 TLNQYYAA 477
            L++ +  
Sbjct: 492 ALSEMWQL 499


>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
 gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
          Length = 490

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 199/495 (40%), Gaps = 27/495 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R  LR+ DN A         A++  +FI  P       +   +  F+  SL 
Sbjct: 1   MIRSLVWFRKGLRLHDNPA-LLDAARDAARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L + G      Q        E L+    + ++ +L + R  E    RRD+ +   
Sbjct: 60  EIDGNLRRLGSRLIVLQ----GRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSM 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   +      +  L     L    +     T      +   +      +  P+     
Sbjct: 116 AERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPPP 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI--------- 236
               ++            DP  P  G            +  VY    QR           
Sbjct: 176 GELDADYGIPTLAELGYPDPECPSRGIIPPGGEGEGLRRLHVYLSDRQRSAGFAKPDTDP 235

Query: 237 --PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  T+ L  +L  G LS R  +  +++ + ++    +    S + +++WREF+  +
Sbjct: 236 TAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEPPM-SLIGQILWREFFYTV 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+ +   L AW +  TGFP IDAAM QL T GW+H+  R
Sbjct: 295 GYATPNYDRIE-GNPVCRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRTEGWLHHLSR 353

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G+  F   LLD D + N   W W +++   +  Y+R+++P  
Sbjct: 354 HAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA-YYRVYSPIS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
             K++DP+G ++R +LP+L  VP ++I+ P              +  +YP PIVDH++A 
Sbjct: 413 FAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQKQAGCVVGRDYPDPIVDHEQAK 472

Query: 468 HHTLNQYYAAKKQSL 482
              L +   A +Q+ 
Sbjct: 473 ACNLERMRLAYEQNA 487


>gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
 gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
          Length = 486

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 109/477 (22%), Positives = 181/477 (37%), Gaps = 25/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VWL+ DLR+TD++AL  A  NS   V+ ++I  P        S R   FI+ SL  +   
Sbjct: 2   VWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L+               +++E LD       +  LF +++  +       L  K    + 
Sbjct: 61  LACVNSQVFIFH----GNAVECLDQLMHHCPINALFSHQEIGLGCTFERDLNIKAWCDKQ 116

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             +  +           N      +     R+ +    +         P        +P 
Sbjct: 117 QIQWHEFQQGAVIRGAKNRTNWDKQWNRVMREPVFSVNLDKVNWVSTYPEQLADMLFSPP 176

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYL 249
                     +    M   G   AL  L  F   +   Y      P    T+   LSPYL
Sbjct: 177 ES------WREREQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRLSPYL 230

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G +S RQ + ++   + D     +    +  + L W   +       P++        
Sbjct: 231 AWGNISLRQVYQQVLAHWNDKG--FRRSLIALSSRLHWHCHFIQKFESEPAIEYFCMNRT 288

Query: 310 WTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           +   +  +     L+  AWK+G TG P+IDA MR L   G+++ R+R +  SFL   L +
Sbjct: 289 YDRLLAESCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTHHLNI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G  +     LD +   +    Q  A  G   +   RI+NPT Q +  DP G FI  
Sbjct: 349 DWRDGVTHLAQLFLDFEPGIHYSQLQMQA--GVTGINTIRIYNPTKQAQEHDPDGEFIHK 406

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL N+P   +  P +  +   +      +  Y  PI+D K++      + +  +
Sbjct: 407 WVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSCYLYPIIDLKRSAKEARQRLWGWR 463


>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
          Length = 482

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 143/494 (28%), Positives = 208/494 (42%), Gaps = 61/494 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+DLR++DN AL  A  +    VI +FI          I A    +   SL  + +
Sbjct: 24  LLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNALAQ 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            LS  G+           + +E L     +  V  + +NR+Y       D  L+K L+ +
Sbjct: 79  DLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQ 134

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLT 185
            I        L   P  +       YKV+TPF KA  +    +  +    ++ VP+    
Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  IP      +           +           E +  Y + RD  A   TS+L
Sbjct: 195 PEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSATSKL 254

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S  + W        +       G   +L EL+WR+F  H +   P +    
Sbjct: 255 SAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMDTQN 307

Query: 306 PFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMRQLN 344
             + +                            +    L AW+ G TG P++DA MR+L 
Sbjct: 308 VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELW 367

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G+D+ P
Sbjct: 368 ATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDDASP 427

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           YFRIFNP  Q K+FDP  T+IR W+PE                     + +YP PIVD K
Sbjct: 428 YFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIVDLK 468

Query: 465 KACHHTLNQYYAAK 478
           ++    L+ Y A K
Sbjct: 469 ESRQIALDAYSAIK 482


>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH
 gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 474

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 112/482 (23%), Positives = 178/482 (36%), Gaps = 30/482 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI 61
           M   +VW R+DLR+TDN  L  A   ++  VI V+   P+++             ++ F 
Sbjct: 1   MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++ SL  +G                 +     +     ++   +    E RR  
Sbjct: 60  RQAVADLRASLRDRGGDLLVRS----GRPATVVPELAQRAGADAVYAQTKPATEERRRAA 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +   L    I      +  L     L              +   +              
Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233
           +     +TP  +P                                   +  + +  Y   
Sbjct: 176 VPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYKTT 235

Query: 234 RDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+       +S+ SP+L+ G LSPR     ++    + +       +  + EL WR+F+ 
Sbjct: 236 RNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANE--DTYWLVFELAWRDFF- 292

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                       KP       I+W++D  L + W  G TG P +DA MR+LN  G+M NR
Sbjct: 293 QFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL   L +DWR G  YF ++L+D D+ASN G W + A  GNDS    R F+  
Sbjct: 353 GRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVR 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q +R+D    +I  WLPEL  +P    H P    +         L ++YP P+VD    
Sbjct: 411 SQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDAR 470

Query: 467 CH 468
             
Sbjct: 471 YQ 472


>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
 gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
          Length = 471

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 220/474 (46%), Gaps = 24/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R DLR+ D+ AL AAC  S   VIAV+I   +      +   Q   +  +L Q  K
Sbjct: 7   IVWVRRDLRLADHPALTAACE-SGQPVIAVYIHDDQVAS---LGGAQKLRLDLALAQFGK 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+ +G      +          L     +     ++++R Y      RD  ++  L+  
Sbjct: 63  TLADRGSRLILRKGPALG----VLRDLIRETGAGAVYWSRLYHATANDRDAAVKSALKAD 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IRLT 185
            I  +SF   +L  P ++       YKVYTP   A+  N V   L              +
Sbjct: 119 GIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCPAKITAPAVWPAS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + R        +     +GE  A   L  F  ++V  YV+ RD+PAI+GTS L
Sbjct: 179 DALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKGTSNL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR CW+  +    D        A  +L EL+WREF  HL    P +    
Sbjct: 239 SENLTFGEISPRMCWHAGQRALRDGKA----DAEVFLKELVWREFAYHLAHHTPRILTDN 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W       + +  + AW+QG TG P +DAAMR++   G MHNR RMI AS+L K L
Sbjct: 295 WKEDWDAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  W++G ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD    ++
Sbjct: 355 LTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRAYV 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + W+ E    P           P SW  + D +  YP P+V  ++     L+ Y
Sbjct: 415 KRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466


>gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Pseudoalteromonas atlantica T6c]
          Length = 495

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 183/482 (37%), Gaps = 25/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D++AL+AA       V+ +++  P          R   F++ S++ +
Sbjct: 6   INVVWLKRDLRLRDHQALFAAAQQ-PLPVVMMYLFEPSVIADPHYDVRHWRFVWQSIVDL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L+             F+++         +  +  ++ +++  +    +      R+ 
Sbjct: 65  NSQLADYNARIIVL----FEEAHSVFAQLMQRFHIAGVYSHQEIGLACTYKRDKAIARML 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   + +         +                      AD     V  +     +
Sbjct: 121 DAEGISWHEYNHGGVIRGATHRRDWEQNWDKHMNAQC------ADTPLHEVNWLTFATLM 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LS 246
           T                     GE+ A + L  F KE+   Y      P    T+   LS
Sbjct: 175 TLDESEALPQEYKTQRPAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSRLS 234

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +S RQ +              +    ++ + L W   +         +     
Sbjct: 235 PYLAWGNISTRQVYQST--ASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEFRPV 292

Query: 307 FIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +   E  +  +    LQAWK G TG PI+DA++R L+  G+++ R+R +  SFL   
Sbjct: 293 NKAYLAYEYEQGEQKDANLQAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFLCHH 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR G  +     LD +   +   +Q  AS         R++NP  Q +  DPQG F
Sbjct: 353 LNIDWREGAIHLAQLFLDFEPGIHYPQFQMQAS--VTGTNLIRLYNPVKQSQDKDPQGQF 410

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PE++++P   IH P           + +L   YP P++D ++      +  +  +
Sbjct: 411 IRRFIPEISDLPDALIHTPWLLTPMECQIYEVELGRTYPHPMIDLEQTGKRARDTLWTFQ 470

Query: 479 KQ 480
           K+
Sbjct: 471 KR 472


>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 510

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 153/510 (30%), Positives = 211/510 (41%), Gaps = 51/510 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L      +   V  VF+  P       ++  +  F+  SL ++Q+
Sbjct: 7   LFWHRRDLRLADNLGLAT-AAAATPAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      +     D  + L           + +NR  E     RD+ +   LQ  
Sbjct: 66  SWREAGSRLFVLE----GDPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----------LRSLPVP 180
                 D   LL     L                  +  V+            +  +  P
Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV------------- 227
           A  +         PR   +    +    P  E+ +                         
Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRPGEAAALVQLQAF 241

Query: 228 -------------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL--- 271
                        + Y   R++P   GTS LS  L  G LSPRQ W   ++         
Sbjct: 242 CDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEALG 301

Query: 272 --IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
              +  +    W  EL WREFY+  +  +P +  G P+ P   +  W+      +AW +G
Sbjct: 302 GAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCEG 360

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG PIIDAAMRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM +L+DGDLA+NN
Sbjct: 361 LTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAANN 420

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           GGWQW+AS+G D  P  RIFNP  Q  +FDP G +IRHWLPEL +V T+ + +      +
Sbjct: 421 GGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPME 479

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
                 YP  +V HKK        Y +  K
Sbjct: 480 R---RGYPAQVVSHKKQQARFKALYASLPK 506


>gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
 gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
          Length = 534

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 222/488 (45%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     +    ++ V++        HG S  +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESWHGTSPARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + +C +    +  +  +   Q+V+ +F N +YEI+E+RRD  L K++
Sbjct: 110 MQKELKDLNIPLVFLECEDRKKIVPTVIEWLKGQKVSHVFGNYEYEIDELRRDIKLVKQV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      D  ++ PG++L  A +  KV+TP+ K  +  L +        PA      
Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPAANPS 229

Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +   FD P                + I  ++P G   A         + +  Y  
Sbjct: 230 SMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAA-SKRMDAFLKTIDSYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWR 288
            R  PA   TS+LS Y S G+ S R    ++ +             + G + W+ E+++R
Sbjct: 289 TRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARPGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGMRQLNHEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467
           FNP  Q +R DP G +IR W+PEL +V  + + AP++ L K +     YP P VD K+  
Sbjct: 459 FNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKPHVDWKQTK 518

Query: 468 HHTLNQYY 475
              + ++ 
Sbjct: 519 QRCMERFK 526


>gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478]
          Length = 444

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 213/474 (44%), Gaps = 32/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+     A   +D +V+A F+  P          R+  ++  SL 
Sbjct: 1   MARALLWFRRDLRLRDHP--ALAAAAADDEVLACFVLDPRLEASS--GRRRLQYLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L   G               E +     +   + +  +  +     RRD+ +   
Sbjct: 57  QLRSDL---GGRLLV----TRGRPEERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    +L P G +       Y+V+TPF +   +    +  R+    A  L  
Sbjct: 110 LGSVPLVATGSSYLLSP-GRVAKDDGTPYRVFTPFFRRWSELGWPSPARTGRDCARWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P         P   +      GE  AL     F  + +  Y + RD P + GTS++S
Sbjct: 169 AQVPVEHCEI---PDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLDGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     L            +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AHLRFGTIHPRTMVAAL--------DFSGAGARSYLRELAFRDFYAAVLYDHPASAWRNW 277

Query: 307 FIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +               +AWK G TGFP+IDA MRQL   G+MHNR+RMI ASFLVKD
Sbjct: 278 NSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGFMHNRVRMIAASFLVKD 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGD+ASN  GWQW A  G D+ PYFR+FNPT QG++FDP G +
Sbjct: 338 LHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRVFNPTTQGQKFDPSGDY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL+     ++               YP PIVDH       L +Y   +
Sbjct: 398 IRRWVPELSAATDAHL-------RTGKRPSGYPPPIVDHGTERAEALRRYRGMR 444


>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
 gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
          Length = 494

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 212/483 (43%), Gaps = 26/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN     A  +    V+ +FI   E+  +         ++  SL+ 
Sbjct: 4   STTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++ G      +      S+  L       + T++FYN  Y+   + RD  ++  L
Sbjct: 62  LNSSLTKLGCPLLMQKS--RGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     ++ L   P  + +     Y  +  F +  +    + D   LP   +    
Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPA 179

Query: 187 PVTPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                +             F       +   +  G  NA   L  F    +  Y + R  
Sbjct: 180 EPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNRGK 239

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYR 292
                TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+ R
Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+HNR
Sbjct: 300 YLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  P 
Sbjct: 359 IRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPH 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           I+G+RFDP G ++R WLPEL+ +PT++IH P +           +L  NYP P+V+   A
Sbjct: 419 IEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAA 478

Query: 467 CHH 469
              
Sbjct: 479 RER 481


>gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays]
 gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays]
          Length = 643

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 219/486 (45%), Gaps = 24/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        ++  SL  +  
Sbjct: 19  VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLDA 77

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL + G       + S   D++  L         T LF+NR Y+   + RD  ++++L  
Sbjct: 78  SLRRLGACRLVTRRSS---DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134

Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I     ++ L   P  +L+     + ++ PF    +     A     P          
Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSR 194

Query: 189 TPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P +   F D   +  +      +  G QNA   L  F    +  Y           TS 
Sbjct: 195 CPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSASTSL 254

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSPYL  G LS R+ +++++ +      D     +     +L  +  RE+ R+L   +P 
Sbjct: 255 LSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNHP- 313

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 314 CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSSF 373

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP
Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 433

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL  +PT++IH P    +        +L  NYP PIV+   A       L
Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGAL 493

Query: 472 NQYYAA 477
           ++ +  
Sbjct: 494 SEMWEL 499


>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
 gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
          Length = 481

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/478 (31%), Positives = 219/478 (45%), Gaps = 25/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WLR DLR+ D+  L AA   S   V+ VFI            A +   +   L +   
Sbjct: 8   IYWLRRDLRLADHPGLAAAA-ASGRPVVPVFIHDESVAALGAAPAFR---LGLGLERFGA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      +   L +   +     +++ R+Y    + RD  L+  LQ  
Sbjct: 64  TLGDMGSRLILRR----GSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  +SF  ++L  P ++   A   YKVYTPF +A+ Q        A  R  P  A   +
Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAWPGS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++   +          +      GE  AL  L +F    +  Y   RD+PA  GTS L
Sbjct: 180 EALSDWGLGAPMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAGDGTSTL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G + PR  W+R  E           GA ++L +L+WR+F  HLM   P +    
Sbjct: 240 SDALSLGEIGPRTLWHRAGEAAHKGA----QGAETFLKQLVWRDFAYHLMYHTPHLLSEN 295

Query: 306 PFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W         +     AW +G TG P++DAAMR++   G MHNR RMI AS+L K 
Sbjct: 296 WRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIAASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+V W++G ++F   L D D A+N  GWQW A  G D+ PYFRIFNP  Q K+FDP+G +
Sbjct: 356 LMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDPKGRY 415

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             HW+ E    P +   +     P SW  + D S  YP PI+   +     L+ Y +A
Sbjct: 416 RNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALSAYASA 471


>gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
          Length = 691

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 218/488 (44%), Gaps = 25/488 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        +I  SL  + 
Sbjct: 18  SVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLD 76

Query: 70  KSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            SL + G       + +   D++  L         T +++N  Y+   + RD  L++ L 
Sbjct: 77  ASLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLA 133

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I     ++ L   P  +++   Q + ++T F    +          LP   I     
Sbjct: 134 AEGIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDL 193

Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    F+   +      +   +  G QNA   L  F    +  Y   R       T
Sbjct: 194 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 253

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSP+L  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +
Sbjct: 254 SLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNH 313

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS    +P +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 314 PS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 372

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS    RI NP  +G +F
Sbjct: 373 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKF 432

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH--- 469
           DP G ++R W+PEL  +PT++IH P             +L  NYPLPIV+   A      
Sbjct: 433 DPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQE 492

Query: 470 TLNQYYAA 477
            L++ +  
Sbjct: 493 ALSEMWQL 500


>gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 487

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 193/490 (39%), Gaps = 31/490 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MK      ++L+WL+ DLR+TD++ALYAA   S    +  ++  P        S R   F
Sbjct: 1   MKK-----INLLWLKRDLRLTDHEALYAATQ-SGRPTLIFYLFEPFLLDNPHYSERHWRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +Y SL+ + + L                D   +L++ C    V  L+  ++  +      
Sbjct: 55  VYQSLVDMNRRLEPLNRSITIATT----DIFHFLEAVCSTYDVEMLYSYQEIGLKVTFNR 110

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L       +   +        P G+++  A    K    + K +   L    L+   + 
Sbjct: 111 DLEV----AQYCKQHTIAWQEFPTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEHLL 166

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                    P +IP            M   G   A   L  F + +   Y +    P + 
Sbjct: 167 PYSEKTLSLPCHIPNA---WRSKTQGMQTGGSDLAWKTLDDFFERRGKNYYKSLSSPTLS 223

Query: 241 G--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +S R+ + R+ E +       +    +  + L W   +       
Sbjct: 224 RKACSRLSPYLAWGNISLREVYQRVLEHWNTKG--FRRSLTALSSRLHWHCHFIQKFESE 281

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             +        +   +  +  +     QAWK G TG P++DA MR L+  G+++ R+R +
Sbjct: 282 CDMEFRCLNRAYEPLLSSSSSTEFDKLQAWKSGQTGVPLVDACMRCLHHTGYINFRMRAM 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFL   +  DWR G E+  S  LD +   +   +Q  A  G   +   RI+NP  Q +
Sbjct: 342 LVSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQA--GVTGINTIRIYNPIKQAQ 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHT 470
             DP G FI  W+PEL  +P   +++P        +  +      Y  PI+D + A    
Sbjct: 400 EHDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLNPIIDIEHAGRLA 459

Query: 471 LNQYYAAKKQ 480
            ++ +  KK+
Sbjct: 460 RDRLWTWKKR 469


>gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
 gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
          Length = 445

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 213/478 (44%), Gaps = 45/478 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A         S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L+ +G+           D+   + S   +     + +NR+Y       D  
Sbjct: 62  RSLHALAQELASRGVKLL----RATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
           ++  L    I   S     L+ P  + N     YKV+TPF  A    L  +  L    + 
Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A R  G    S+ P       Q    +             +  +  + +Y E+RDIPA  
Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQLDLAHYAEERDIPARN 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LSP+L  G +SPR+ W    EE           A  + +EL+WR+F  H +   P 
Sbjct: 238 ATSLLSPHLRFGEVSPREVWVAAAEEP---------DAEKFQSELLWRDFAWHRLYHLPD 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +    +W+ +   L+ W++G TG P++DA MR+L   G+MHNR+RM+  SF
Sbjct: 289 LATRNVRQKFNRF-DWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVVGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP  Q +RFDP
Sbjct: 348 LTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQRFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IR W P L+                         PIVD +++    L  Y   K
Sbjct: 408 DGAYIRQWAPTLSA-----------------------PPIVDLRQSRQAALEAYAEIK 442


>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
 gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 482

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 143/494 (28%), Positives = 208/494 (42%), Gaps = 61/494 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+DLR++DN AL  A  +    VI +FI          I A    +   SL  + +
Sbjct: 24  LLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNALAQ 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            LS  G+           + +E L     +  V  + +NR+Y       D  L+K L+ +
Sbjct: 79  DLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQ 134

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLT 185
            I        L   P  +       YKV+TPF KA  +    +  +    ++ VP+    
Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  IP      +           +           E +  Y + RD  A   TS+L
Sbjct: 195 PEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSATSKL 254

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S  + W        +       G   +L EL+WR+F  H +   P +    
Sbjct: 255 SAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMDTQN 307

Query: 306 PFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMRQLN 344
             + +                            +    L AW+ G TG P++DA MR+L 
Sbjct: 308 VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELW 367

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G+D+ P
Sbjct: 368 ATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDDASP 427

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           YFRIFNP  Q K+FDP  T+IR W+PE                     + +YP PIVD K
Sbjct: 428 YFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIVDLK 468

Query: 465 KACHHTLNQYYAAK 478
           ++    L+ Y A K
Sbjct: 469 ESRQIALDAYSAIK 482


>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 483

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 127/487 (26%), Positives = 212/487 (43%), Gaps = 35/487 (7%)

Query: 1   MKATTAMS-----VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---- 51
           M+    ++     V +VW RNDLR+ DN  L  A  ++D  ++ V+   P Q+       
Sbjct: 1   MENKQKINNLRTQVKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGF 59

Query: 52  -GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
               A ++ F+  +L  ++ +L  KG               E +       +   ++ ++
Sbjct: 60  AKTGAHRAQFLIETLANLRANLEAKGSGLVIR----IGKPEEVIADLAKATQAKAVYASQ 115

Query: 111 QYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           +    E    K LEKRL    +  +      L+ P  +      +  V+T FRK + Q L
Sbjct: 116 EIGTEEDATVKQLEKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGL 175

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------ALHILRK 221
              +  +LP     L   V   ++P+  D       P                       
Sbjct: 176 KVREAVTLPDTLPLLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYI 235

Query: 222 FCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           + +  + +Y + R+       +++ SP+L+ G +S R  ++ +K+    ++       + 
Sbjct: 236 WQRSLLQHYKDTRNGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQVVKNK--STYH 293

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAA 339
            + EL+WRE++R +   Y      K  I    ++E + +     + WK G TG P IDA 
Sbjct: 294 LVFELLWREYFRLVARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDAN 353

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+LN  G+M NR R   AS+L KDL ++W  G  YF SQL+D D++SN   W + A  G
Sbjct: 354 MRELNATGFMSNRGRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVG 413

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453
           ND     R F+   Q  R+D +G +++HWLPEL ++P   +H PH             L 
Sbjct: 414 NDPR-KDRYFDILSQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILG 472

Query: 454 LNYPLPI 460
            +YP PI
Sbjct: 473 QDYPKPI 479


>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
 gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
          Length = 522

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 218/476 (45%), Gaps = 20/476 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LV LR+D R+ DN AL+AAC      V+  ++             R + +  A+  Q+  
Sbjct: 60  LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAALQDAPTT--RIAGWAQAACAQLAT 116

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++G                   +       T +F+NR+Y+   +  D  +   L+ +
Sbjct: 117 SLHKQGQTLLMLSGPTRLSV----PALAQAINATDVFWNRRYDAPGIAADTDVHASLKKQ 172

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +        L   P +I   A Q Y+V+T + +A             P    +   P  
Sbjct: 173 GVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPDMHGKSYVPAR 232

Query: 190 PSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TS 243
             N+P                P +  GEQ A   L +F +  +  Y  QRD       TS
Sbjct: 233 ALNLPEGVRLARVGTQMPPALPGWTSGEQCAHTNLHRFIENALEDYETQRDRTDATHGTS 292

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPY+ +G +S RQ W+ ++     L  +  + A  +L EL WR+F    M   P +  
Sbjct: 293 LLSPYIRVGQISVRQIWHAIR-HAAHLHPQLATDAEKFLAELGWRDFAWMQMFTTPDLAT 351

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                     + W  D+  L AW+QG TGFP++DA MRQL   GWMHNR+RM+ ASFL K
Sbjct: 352 RN-LRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTK 410

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL DW+ GE +F + LLD D A N   WQW A TG D+ P+FRIFNP  Q +++DP G 
Sbjct: 411 HLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPLGQ 470

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  +  + IH P     +    LNYP PIVD K      L  +    K
Sbjct: 471 YIRTWVPELAALDNKTIHTPWKSAQR----LNYPPPIVDLKLGRLRALECWKNLPK 522


>gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82]
          Length = 406

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 203/400 (50%), Positives = 271/400 (67%), Gaps = 3/400 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++  +C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+                FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G L PRQC  RL  E    L         WL+ELIWREFYRHLM +YPS+C  +P
Sbjct: 240 ASLATGGLLPRQCLYRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF
Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYF 397


>gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
 gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
          Length = 450

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 208/468 (44%), Gaps = 25/468 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L  A      +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+         FD           +       ++      +             
Sbjct: 59  EDLKSIGLDLAIF----FDTPKNVFTKLKKEN------FDEILVSVDFDNYAKKRDEEVE 108

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           ++I         L    I+  + Q            ++ L Q++       +  +     
Sbjct: 109 KIIPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNCLEPLHQSNHIEEFKISTNIKKINY 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +           I+   P     +   L     +K+  Y + RD   +   S LS +L
Sbjct: 169 DYDFFPTLQ-DLGFIEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAGSNLSVHL 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G++S +  +N++K+               ++ ELIWREFY +++  +P          
Sbjct: 228 RFGLISAKIVFNKIKKLQAPKKEI-----DFFIRELIWREFYNYILFHFPKSQFENLNGI 282

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                E   +    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+LVK+LL+DW
Sbjct: 283 KVNWNE---NEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD +  FI+  L
Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +L ++PT+ IH       + ++ L+YP  IV    +    + ++  A
Sbjct: 400 KDLKDIPTKQIHT--ENGVQENIFLDYPKQIVGINYSRDRAILEFKRA 445


>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata]
          Length = 527

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 126/491 (25%), Positives = 192/491 (39%), Gaps = 29/491 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R +LR+ DN  L AA  +S+A +  V+I           I A + +F+  SL  + 
Sbjct: 6   IHLFRKELRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLH 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K+L Q G      Q     +    L  +  +  +T++  + + E      +  +++    
Sbjct: 65  KNLGQLGSCLLVIQ----GEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLP 178
                    S  L     +          T  R   I           +NL   D +   
Sbjct: 121 LGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRCR 180

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P   L               P            G +     L        +        
Sbjct: 181 APEPGLAECYRVPLPVDLKISPESLSPWRGGETEGLRRLEQHLIDQGWVTSFAKPRTSPN 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             +  T+ LSPY S+G LS R  + RL   +            S   +L+WREF+ + +A
Sbjct: 241 SLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVA 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                       P   +I W KD+  L  WK   TGFP IDA M QL   GW+H+  R  
Sbjct: 299 SATPNFTQMAGNPICLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLARHA 358

Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   G
Sbjct: 359 VACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHQ-YTRIFCPVRFG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           KR DPQG +IR +LP L N P++YI+ P +  ++        +  +YP P+V+HK+A  H
Sbjct: 418 KRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMVNHKEASDH 477

Query: 470 TLNQYYAAKKQ 480
            L      +++
Sbjct: 478 NLQLMKQVREE 488


>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 472

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 50/477 (10%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60
           +      V+L W R DLR+ DN  LY A   S   V+ +FI   +   +       +  F
Sbjct: 11  ENQKKQKVNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEF 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I+  L Q+Q +L + G            ++     S   +  ++ +F NR YE    +RD
Sbjct: 70  IHNYLSQMQDNLRKHGSTMVVKHS----NAESAFKSLMEEFDISCVFTNRDYEPYAKKRD 125

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + +++ L  + I  K F D V+     +       +KVYTPF K  I  L + D +S   
Sbjct: 126 QQIKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKS 185

Query: 180 PAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            ++             P      FQ     FP  + +   +             + RD P
Sbjct: 186 ESLMNNYWKSQVEVPFPTLEQIGFQKTGIEFPPSQLDEELVKNYD---------KTRDYP 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            I  TS +S +L  G +S R+   +                  +L+EL WREF+  ++  
Sbjct: 237 HI-KTSLMSVHLRFGTVSIRELVRKAVLLNQK-----------YLDELCWREFFMMMIDQ 284

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P       F     K+EW  +    +AW +G TG+P++DA MRQLN  G++ N+LRMI 
Sbjct: 285 FPLFATEN-FKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIA 343

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K+LL+DWR GE YF  +L+D DLA+N GGWQW   +G D  PY R+ +P +Q K+
Sbjct: 344 ASFLTKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKK 403

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +DP   +++ W+                   ++     YP  IV+++++    L+ +
Sbjct: 404 YDPDFKYVKTWV-------------------EDFNEDTYPKRIVNYEESRQRALDAF 441


>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
 gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
          Length = 445

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 214/481 (44%), Gaps = 45/481 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A         S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L+ +G+           D+   +     +     + +NR+Y       D  
Sbjct: 62  RSLHALAQELASRGVKLL----RATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
           ++  L    I   S     L+ P  + N     YKV+TPF  A    L  +  L    + 
Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A R  G    S+ P       Q    +             +  +  + +Y E+RDIPA  
Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQLDLAHYAEERDIPARN 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LSP+L  G +SPR+ W    EE           A  + +EL+WR+F  H +   P 
Sbjct: 238 ATSLLSPHLRFGEVSPREVWVAAAEEP---------DAEKFQSELLWRDFAWHRLYHLPD 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +    +W+ +   L+ W++G TG P++DA MR+L   G+MHNR+RM+  SF
Sbjct: 289 LATRNVRQKFNRF-DWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVVGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP  Q +RFDP
Sbjct: 348 LTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQRFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            G +IR W P L+                         PIVD +++    L+ Y   K  
Sbjct: 408 DGAYIRQWAPTLSA-----------------------PPIVDLRQSRQAALDAYAEIKDA 444

Query: 481 S 481
           +
Sbjct: 445 N 445


>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
          Length = 551

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 128/498 (25%), Positives = 201/498 (40%), Gaps = 31/498 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL AA      A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        I      S     P   I  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR- 234
           P +  TG      +PR  +  +  I       F  GE  AL  +R+   +K +    ++ 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                      T+ LSPYL  G LS R  ++ +++ +            S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W + +      Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQS 481
             A          A   +
Sbjct: 494 AIASKECKKMMGEAYASN 511


>gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
 gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
          Length = 454

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 198/458 (43%), Gaps = 30/458 (6%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57
           M++    +VW R DLR+ DN+AL  A  N+  +VI VFI     ++             +
Sbjct: 1   MTMKRRAIVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + FI  S+  +++SL +               + + L S   + + + +F NR+    E 
Sbjct: 60  AQFIIESVADLRQSLRKLNSDLIVR----VGKTEDILFSMAKECKTSWIFCNRERTAEEA 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ 171
           R    LE RL        ++   +L   + L   +Q         +  ++ +V       
Sbjct: 116 RIQDELENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLS 175

Query: 172 ADLRSLPVPAIRLTGPVTP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
              R+    +        P       N+  F   P   +       E         +  +
Sbjct: 176 KPDRTFNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETD 235

Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +  Y E R+       +S+LSP+L+ G LSP+  ++ LK+             +    E
Sbjct: 236 LIKNYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKYEAQRGANE--STYWLFFE 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+F+R +   Y +               W ++  +LQ W  G TG P IDA M +L 
Sbjct: 294 LLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELK 353

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFLVKDL ++W++G EYF S L+D D+ SN G W + A  G+D   
Sbjct: 354 HTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPRE 413

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
             R FN   Q KR+DP G +++HWLPEL ++P   +H 
Sbjct: 414 -DRYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVHE 450


>gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 526

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 103/476 (21%), Positives = 181/476 (38%), Gaps = 35/476 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R +LR TD+ AL  A    D  V+ +F+  P+ +   G++   +   ++ S+  ++
Sbjct: 23  VVWHRRNLRTTDHGALSYAGEEYDT-VLPLFVFDPQFYGNDGLACDARLLLLHESVESLR 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +     G    Y       D +  L +            +        R D+        
Sbjct: 82  RLYEAVGGTLSYAH----GDPLSVLSALAAAGWDIVATADPTARYGRQRDDRAAAH---- 133

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                   D   +    ++         ++   +A  ++   +     P      + P T
Sbjct: 134 -------CDVRFVDSDGLVRDQAWPRAGWSDRVEAWFES---SPHSWDPADVSFASLPGT 183

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247
            S       Y   A     P G + A     +     +  Y      P    T    LSP
Sbjct: 184 VSVADIERTYDVHAAKTTVPPGGRAAGARRLRQFVADIEQYPGNISAPTDARTGTSGLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  + +        P +G   +++ L W + Y   +  +         
Sbjct: 244 HLRFGSLSVREVYRYVMD-----NAPPCTGREMFVSRLYWNKHYHQKLEDWSGWTTTAVN 298

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                    + D  L+ AWK+G TGFP++DA+MR L   GW++ R+R + AS        
Sbjct: 299 PAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVFADLFQQ 358

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+IG +++   L+D D A N    QW +  G       RI+NP  Q +  DP GTF+  
Sbjct: 359 PWQIGADFYHYHLIDADPAINYT--QWQSQAGTVGTNLMRIYNPIKQVRDNDPDGTFVST 416

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++PEL  +P +Y+  P              +  +YP P+V+++ A    + +Y   
Sbjct: 417 YVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERYERL 472


>gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 478

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 153/484 (31%), Positives = 220/484 (45%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   SDA + + +I           S+R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++  L+ +
Sbjct: 65  NWKKMGSRLVLEE----GDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----------------NLVQADL 174
            I        LL     +                 ++                     D 
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +     AI  +  V      +   +P   I P  P        +     ++K+Y Y   R
Sbjct: 181 KFKENKAINSSDSVLE-KFIKNIKFPGSNICPCRPGENAAQTLLENFINEKKIYSYNSAR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           D P+  GTS LS  L  G +S R+ WN       D   +       +W  EL+WREFY+H
Sbjct: 240 DFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIETWQKELVWREFYQH 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+    +   W  ++ L Q W  G TG PI+DAAMRQLN+ GWMHNR 
Sbjct: 300 CLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP   +I++W+PEL+ V    +    +    N    NY  PIV+H        + 
Sbjct: 418 QAKKFDPICEYIKYWIPELSRVSNSEL---LNGEISNLEKNNYSSPIVNHNIQQRLFKSL 474

Query: 474 YYAA 477
           Y   
Sbjct: 475 YAEI 478


>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
          Length = 548

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/499 (20%), Positives = 181/499 (36%), Gaps = 37/499 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          VFI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L + G      +                +  + +L + +  E     RD  ++   + 
Sbjct: 65  NQLKKHGGRLIMIK----GKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACKE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+CK      L  P +++     +  +        +  +         +    +    
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P +    F    +   P           I            ++Q               
Sbjct: 181 LPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNE 284
                  +   +     LSP L  G LS R  +  +++ F  +       +S +     +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWRE++  +    P+           +      +   LQ W +G TGFP +DAAMRQL 
Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEPEGDELQRWVEGRTGFPFVDAAMRQLR 360

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402
           T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ 
Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
           +       P   G+R DP G ++R ++PEL  +P QYI+ P              +  +Y
Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDIQERATCIIGKDY 480

Query: 457 PLPIVDHKKACHHTLNQYY 475
           P P+V+H  A     N   
Sbjct: 481 PAPVVNHLVAAQRNKNAMK 499


>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 482

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 209/497 (42%), Gaps = 61/497 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL  A  +    VI +FI          I A    +   SL  
Sbjct: 21  SPTLLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNA 75

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 76  LAQDLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182
           + + I        L   P  +       YKV+TPF KA  +    +  +    ++PVP+ 
Sbjct: 132 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSH 191

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                     I       +           +           E +  Y + RD  A   T
Sbjct: 192 LTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSAT 251

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P + 
Sbjct: 252 SKLSAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMD 304

Query: 303 MGKPFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMR 341
                + +                            +    L AW+ G TG P++DA MR
Sbjct: 305 TQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMR 364

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G+D
Sbjct: 365 ELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDD 424

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP PIV
Sbjct: 425 ASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIV 465

Query: 462 DHKKACHHTLNQYYAAK 478
           D K++    L+ Y A K
Sbjct: 466 DLKESRQIALDAYSAIK 482


>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 550

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 117/516 (22%), Positives = 193/516 (37%), Gaps = 53/516 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64
           V + W RN LR  DN  L  AC  S++ ++ +++  PE         R    +++F+  S
Sbjct: 11  VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR----- 119
           + +V + L + G             S E L       +   LFY ++       +     
Sbjct: 70  INEVDEKLRKMGSQLVV----VLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125

Query: 120 -------------DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166
                         +   +      +             +  +      K++     A  
Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185

Query: 167 QNLVQ-----ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------ 215
            N V+      +     +          P+     +      +      G   A      
Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245

Query: 216 -----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
                 ++ R              +      T+ LSPY+  G +SPR+ ++ L + +   
Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305

Query: 271 LIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             K       S   +L+WR+ + +L+ +           P   +I W+ D  LL AWK  
Sbjct: 306 NSKETSKPPVSLHGQLMWRD-FNYLVGYSTPNFDKMIDNPIARQIPWDDDPDLLLAWKMS 364

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDA M QL   GW+H+  R   A FL + DL   W  G   F   L+D D + N
Sbjct: 365 KTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSIN 424

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           N  WQW + T +    YFR ++P   GK+ DP G +IR WLP+  ++P +YI+ P     
Sbjct: 425 NFNWQWLSCTAHFYQ-YFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPI 483

Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +        +  NYP PIVDHK    + +++   A 
Sbjct: 484 ELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEAY 519


>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
 gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
          Length = 556

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 126/491 (25%), Positives = 197/491 (40%), Gaps = 30/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69
           +   R  LR+ DN  L AA   SD  +  V+I          +  +++ +F+  S+  + 
Sbjct: 6   IHIFRKGLRLHDNPTLVAALETSDI-IYPVYILDKNFMTSSSVIGSKRWNFLLQSIEDLH 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L +        Q     D    L  +  +  +T++ ++ + E      D+ +    Q 
Sbjct: 65  CNLQKLNSCLFVIQ----GDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 S     L    SIL        +       ++  L   D  +  +         
Sbjct: 121 LGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKCT 180

Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGE----QNALHILRKFCKEKVYYYVEQRD 235
           TP+       Y           +   P +  GE          L K      +   +   
Sbjct: 181 TPTEFAAEEYYRIPKPEDLGICRDCAPNWKGGESEALCRLEQHLEKQGWVANFQKPQTVP 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +  T+ LSPY S G LS R  ++RL   +            S   +L+WREF+ +  
Sbjct: 241 NSLLPSTTGLSPYFSFGCLSARVFYHRLSNIYAQSKNHSLPPV-SLQGQLLWREFF-YTA 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A            P   +IEW K+   LQ W++G TGFP IDA M QL+  GW+H+  R 
Sbjct: 299 ASSTPNFTHMVGNPICLQIEWYKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF P   
Sbjct: 359 AVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
           G+R DP+G +IR +LP L N P +YI+AP +  ++        +  +YPLP+VDH  A  
Sbjct: 418 GRRTDPEGNYIRKYLPVLKNFPAKYIYAPWTAPEEIQKQSGCLIGKDYPLPMVDHTTASE 477

Query: 469 HTLNQYYAAKK 479
           H L      ++
Sbjct: 478 HNLQLMRLVRE 488


>gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 463

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 196/471 (41%), Gaps = 23/471 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLL 66
            L   R DLR+ DN  L  AC  SD +V+  FI  P Q         S     F+  SL 
Sbjct: 5   SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDNNAFFSEHAFAFLVRSLK 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++++ L ++G      +     D    L        ++ +  NR Y     RRD  L   
Sbjct: 64  ELRRRLRERGGRLFVFE----GDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQLRSV 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +         +++LL     +  +      +T          V        V       
Sbjct: 120 CREEGARFQSSNALLLTEPEEVQPSGGGA-YHTFTPFRRRAQSVSTPPPRGKVEGPFCDR 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            ++    P      +   D     G    +  L     E +  Y + R  PA +  + LS
Sbjct: 179 ALSVETTPLETYDRYPTDDLRAKGGRAEGIEFL--EEIETLGAYRDARHQPAKESLTALS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +   G +S R+    +K+ F D            +++  WR+FY HL+   P       
Sbjct: 237 AHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLT-TS 287

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+ ASFL KDLL
Sbjct: 288 LRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDLL 347

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q ++ DP+  +I+
Sbjct: 348 VDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYIK 405

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  A
Sbjct: 406 RWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 455


>gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
 gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
          Length = 464

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 201/471 (42%), Gaps = 21/471 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+ W + DLRI DN+ L AA   +D +V+ V++   +      I  RQ  F+ A +  +
Sbjct: 9   MHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLAN--IGKRQKAFLLAGVRAL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++    G      + +    +++ L +   +    +++YN  Y      R + +++ L 
Sbjct: 65  KQAYRDHGGELLVKKGT----AVDVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDEALP 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            + +                NH+          +   + +     L  +  P    T   
Sbjct: 121 TKSLTDLVLVDPAGLDSQYENHSRFYDDWQAHHKLPPVGSPDSGSLVDVSDPTTAPTIET 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                   ++   Q  D     G +                             S++SPY
Sbjct: 181 EMDLPTPGYEGARQRYDDFLTGGIETYNDTRDDMQAAVERPT---------SAVSRMSPY 231

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G++  R+ W    +   +     +     +  EL WRE   HL+ + P   + + + 
Sbjct: 232 LAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWREQSYHLLYYNP-TLLSENYK 290

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            +  +IEW  D    +AWK G TG+P IDA MRQL   G++HNR R   ASFL K LLVD
Sbjct: 291 TFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGYIHNRPRQNVASFLTKHLLVD 350

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G  +F  +L+D D A+N   WQW ASTG DSV   RIF+P  Q  ++D    ++  +
Sbjct: 351 WREGARHFRKRLVDHDPANNAASWQWTASTGTDSVD-VRIFDPVAQMSKYDSGADYVTEY 409

Query: 429 LPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +PEL  VP+  I    +    ++ +L+ +Y  PIVD   A       +  A
Sbjct: 410 VPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAAYERAQRVFETA 460


>gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 477

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 47/481 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQS 58
           +  TAM+  L+W R+DLR+ DN+AL  A   +   DA ++AV +  P       +    +
Sbjct: 39  RRMTAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATT 97

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +   SL  +   L+  G+           D+ E +     +   T + + R+Y      
Sbjct: 98  WWRERSLYALAHDLADHGVELI----RAAGDAREEIPRLAAELGATTVTWTRRYHGPLRE 153

Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            D  +++ L  +     S     L+ P  + N   Q YKV+TPF KA     V  D    
Sbjct: 154 VDATVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQ-VAGDEPEG 212

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                      +    P    +     +   P           +  +  +  Y E+RDIP
Sbjct: 213 VPEMGASASSASAWPKPTEPAWAASLAEHWTPG----EAGARERLAQLDLANYAEERDIP 268

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A+  TS LSP+L  G +SPR+ W              +  A  + +EL+WR+F  H +  
Sbjct: 269 ALNATSLLSPHLRFGEVSPREVW---------FAAAEEPEAAKFHSELLWRDFAWHRLYH 319

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P++          ++ +W+ D   L+ W+ G TG P++DA MR+L   G+MHNR+RM+ 
Sbjct: 320 LPNLATENV-REKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVV 378

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP  Q KR
Sbjct: 379 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKR 438

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G ++R W P L+                         PIVD +++    L+ Y   
Sbjct: 439 FDPDGEYVRRWAPALSA-----------------------PPIVDLQESRQAALDAYAEI 475

Query: 478 K 478
           K
Sbjct: 476 K 476


>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 211/472 (44%), Gaps = 21/472 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TDN  +  A       ++ VFI  PE      + A     +  ++    +
Sbjct: 7   ILWFRRDLRLTDNPMVREAAATG-RPLVPVFILDPE---TERLGAAPKWRLGLAVEAFAQ 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L + G      +      ++E L     +     + ++R  E     RD+ ++  L+ +
Sbjct: 63  ALERLGSRLILRRGP----ALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLT 185
            I  +S     L  P  +       Y+V+TPF K++    V A + +            +
Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + R  +     +     +GE  A   L +F    V  Y   RD      TS+L
Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+       +       GA  +L EL+WREF  HL+   P +    
Sbjct: 239 SENLTYGEISARTIWHAGLRARAEGRA----GAEKFLQELVWREFAWHLLYHTPEIASRN 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 W-RGEWDAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFR+FNP  Q ++FDP G + 
Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413

Query: 426 RHWLPELNNVP-TQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
           R ++ EL+  P  + +    +      L+ +  YP P+V   +     L  Y
Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQCYPRPVVGLAEGRARALAAY 465


>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
 gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
          Length = 532

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 191/498 (38%), Gaps = 36/498 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL    + + A      V  +F+  P       + A +  F+  SL
Sbjct: 9   IHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L + K+L +        +       ++   +   +  V  L +    E   V+RDK ++ 
Sbjct: 69  LDLDKNLKELNSRLYIVR----GKPVDIFPNLFDRWNVELLTFETDIEPYAVKRDKAVQD 124

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----------ALIQNLVQADLR 175
                 +      S  +    I+          T  +            ++    +    
Sbjct: 125 IAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRLPNG 184

Query: 176 SLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             P+      G       P        P +     FP GE+ AL  L     ++ +    
Sbjct: 185 VQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDEHWVASF 244

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           ++   A       T+ LSPYL  G LS R    RL E  +    K      S + +L+WR
Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRLHEI-LKRHPKHSKPPVSLVGQLLWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E + +  A             +  +I W +    L AW  G TG+P IDA MRQL   GW
Sbjct: 304 E-FYYTAAAVEPNFDRMLGNVYCLQIPWQERPDHLDAWAHGRTGYPFIDAIMRQLRQEGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++      YFR
Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMWLSASAFFHQ-YFR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +++P   GK+ D  G +IR ++PEL   P   I+ P              L ++YP  IV
Sbjct: 422 VYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLGIDYPHRIV 481

Query: 462 DHKKACHHTLNQYYAAKK 479
           +H       + +  AA K
Sbjct: 482 NHDIVHKENIKRMSAAYK 499


>gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis]
 gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 184/492 (37%), Gaps = 30/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69
           +   R  LR+ DN  L  A   SD  V  V+I          +  +++ +F   S+  + 
Sbjct: 6   IHIFRKGLRLHDNPTLVTALETSDV-VYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDLH 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L +        Q     D    L  +  +  +T++ ++ + E      D+ +    Q 
Sbjct: 65  CNLQKLNSCLFVIQ----GDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV-----------YTPFRKALIQNLVQADLRSLP 178
                    +  L     +                             + +   D     
Sbjct: 121 LGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKCI 180

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---NALHILRKFCKEKVYYYVEQRD 235
            P             P                  +        L K      +   +   
Sbjct: 181 TPTKLAAEEYYRIPKPEDLGISKDCPTNWIGGESEALSRLEQHLEKQGWVANFKKPQTIP 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +  T+ LSPY S+G LS R  ++RL   +            S   +L+WREF+ + +
Sbjct: 241 NSLLPSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSKNHSLPPV-SLQGQLLWREFF-YTV 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A            P   +I+W K+   LQ WK+  TGFP IDA M QL+  GW+H+  R 
Sbjct: 299 ASSTPNFTHMVGNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL + W  G + F   LLD D   N G W W +++      Y RIF P   
Sbjct: 359 AVACFLTRGDLWISWEEGMKVFEEFLLDADYCINAGNWMWLSASAFFH-HYTRIFCPVRF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
           GKR DP+G +IR +LP L N P +YI+ P +  ++        +  +YPLP+VDHK A  
Sbjct: 418 GKRSDPEGNYIRKYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTASE 477

Query: 469 HTLNQYYAAKKQ 480
           H L      +++
Sbjct: 478 HNLQLMRQVREE 489


>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
          Length = 553

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/493 (22%), Positives = 184/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L        +    +FI  P       +   +  F+  SL  + +
Sbjct: 14  VHWFRKGLRLHDNPSLKDGLKGC-STYRCIFILDPWFAGSSNVDINKWRFLLESLEDLDQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +          L     +   T L +    E     RD+ +    +  
Sbjct: 73  NLRKLNSRLFVIRGQPAG----VLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCKDF 128

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S     P  I+        +     + +I ++         +    +    T
Sbjct: 129 NIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGRGYT 188

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +      +    ++            ++  GE  AL  L +  + K +     R    
Sbjct: 189 PMDESMDDRFSVPTLEELGFDTDGLMPAVWHGGETEALTRLERHLERKAWVASFGRPKMT 248

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R    +L   +  +         S   +++WREF+   
Sbjct: 249 PQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKKIKKAQ--PPLSLHGQVLWREFFYCA 306

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+ ++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 307 ATNNPNFDKM-IGNPICVQIPWDSNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMWLSCSSFFHQ-FFHCYCPVR 424

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FI+ + P L N P QYIH P +  +      K  +  +YPLP+V+H +  
Sbjct: 425 FGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVS 484

Query: 468 HHTLNQYYAAKKQ 480
              + +     ++
Sbjct: 485 QLNIERMKQVYQR 497


>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 504

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 164/502 (32%), Positives = 216/502 (43%), Gaps = 45/502 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L AA   + A V  VF+  P       ++  +  F+  SL ++ +
Sbjct: 11  LFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWFLAESLRELAE 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                G      +     D    L       R   L +NR  E     RD+ +   LQ  
Sbjct: 70  RWRAAGSRLLVLR----GDPAVVLPQLAAALRAPVLAWNRDVEPYGRERDRRVAAALQAE 125

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN----------------LVQAD 173
                 D   L + P ++       Y+VY PF +                      V A 
Sbjct: 126 GRRVLVDWDQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGSAAAGGLEPVAAP 185

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---- 229
                +    L      +  P     P  A     P     A     +  +         
Sbjct: 186 TGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCRPGEAAAQEQLQA 245

Query: 230 -------------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-K 275
                        Y + R++P   GTS LS  L  G LSPRQ W   ++          +
Sbjct: 246 FCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQQARALARSTEAE 305

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                W  EL WREFY+  +  +P +  G P+ P  ++  W  D    +AW+QG TG PI
Sbjct: 306 QSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRFEAWRQGLTGMPI 364

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DAAMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM+QL+DGDLA+NNGGWQW+
Sbjct: 365 VDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDGDLAANNGGWQWS 424

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
           AS+G D  P  RIFNP  Q  +FDP+ ++IR WLPEL +V T  +    S          
Sbjct: 425 ASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADL---ISGAIPPLERRG 480

Query: 456 YPLPIVDHKKACHHTLNQYYAA 477
           YP PIV+HK         Y A 
Sbjct: 481 YPEPIVEHKIQQARFKALYAAL 502


>gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays]
 gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays]
          Length = 699

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 140/504 (27%), Positives = 226/504 (44%), Gaps = 32/504 (6%)

Query: 1   MKAT-TAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52
           M A+ ++MS         +VW R DLR+ DN A  AA   +  +V+  ++  PE+   + 
Sbjct: 1   MSASQSSMSGAGEPGARAVVWFRRDLRVEDNPA-LAAAPRAAGEVVPAYVWAPEEDGPYY 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                  ++  SL  +  SL + G       + S   D++  L         T LF+N  
Sbjct: 60  PGRVSRWWLSQSLKHLDASLRRLGACRLVTRRSS---DAVVALIDLVRSTGATHLFFNHL 116

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170
           Y+   + RD  ++++L    I     ++ L   P  +L+   + + ++ PF    +    
Sbjct: 117 YDPLSLVRDHRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPD 176

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEK 226
            A     P           P +   F D   +  +      +  G QNA   L  F    
Sbjct: 177 PAAPLLPPKRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGP 236

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282
           +  Y   R       TS LSPYL  G LS R+ +++++ +      D     +     +L
Sbjct: 237 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFL 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+
Sbjct: 297 RSIGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 355

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D 
Sbjct: 356 LWATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 415

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
               RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NY
Sbjct: 416 RELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 475

Query: 457 PLPIVDHKKAC---HHTLNQYYAA 477
           PLPIV+   A       L++ +  
Sbjct: 476 PLPIVELDAAKGRLQAALSEMWQL 499


>gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 437

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 226/476 (47%), Gaps = 49/476 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63
           +A+   + W R DLR+ DN AL+ A  +S+A V  VFI       R    +  +  FIY 
Sbjct: 2   SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q+ L   G   +    + + D     +    + +   ++ N  YE   + RD L+
Sbjct: 61  QLQLLQEQLKPYGSSIK----TYYGDPATVWEEIYEEYKPAAVYVNSDYEPAAITRDLLI 116

Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181
           +  LQ   +   +F D V+     I+ +    Y VYTP++   +  L +   L S     
Sbjct: 117 QGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEEKLPLPSYNSEN 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
           +          +P   D  F      FP           K     +  Y + RDIP+   
Sbjct: 177 LLNNLRQADYTLPSLQDLGFSLSTIPFP----------EKTFFTGIADYADTRDIPSLEN 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS L  +L  G +S R+   R             S   ++L+EL+WREF+   +  +P 
Sbjct: 227 GTSHLGVHLRFGTISIRKLVERA----------YPSQNKTYLHELVWREFFMMCLWHFPH 276

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + + +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TASF
Sbjct: 277 -TVNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPTIQ K+FDP
Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +  +I+ W+PE  +                     YP PIV+H  A    L +Y A
Sbjct: 396 KFVYIKKWVPEFQDFS-------------------YPSPIVEHAWARDRALARYKA 432


>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
          Length = 468

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 209/497 (42%), Gaps = 61/497 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL  A  +    VI +FI          I A    +   SL  
Sbjct: 7   SPTLLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 62  LAQDLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 117

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182
           + + I        L   P  +       YKV+TPF KA  +    +  +    ++PVP+ 
Sbjct: 118 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSH 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                     I       +           +           E +  Y + RD  A   T
Sbjct: 178 LTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSAT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P + 
Sbjct: 238 SKLSAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMD 290

Query: 303 MGKPFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMR 341
                + +                            +    L AW+ G TG P++DA MR
Sbjct: 291 TQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMR 350

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G+D
Sbjct: 351 ELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDD 410

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP PIV
Sbjct: 411 ASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIV 451

Query: 462 DHKKACHHTLNQYYAAK 478
           D K++    L+ Y A K
Sbjct: 452 DLKESRQIALDAYSAIK 468


>gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
 gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
          Length = 429

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 209/472 (44%), Gaps = 45/472 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           ++  W R DLR+ DN  LYAA    + KV  +FI   +  ++    +  +  FI+  + +
Sbjct: 2   INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +  KG          + D  E        Q                R  ++ +   
Sbjct: 61  LDHQIKAKGGS---GIWVYYGDVKETWKEILQSQTGDVYCNRDYEPAAIDRDHEVEQILR 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H     SF D V+     +L      Y VYTP+RKA         L+  P         
Sbjct: 118 SHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAWELKFSPEMLKPFPSDLKNNYDT 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                IP   +  F+          + A    +    + +  Y   RD PA+  TS LS 
Sbjct: 178 SPSKAIPSLEEMGFEE---------KKAHEGNKNLNTQLLLNYSVDRDFPALNATSLLSV 228

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L  G +S R    +                 ++L+ELIWREF+  ++  +P     + F
Sbjct: 229 QLRFGAISIRHLAKQALNLDS-----------TYLHELIWREFFMMILYHFPHSAKQE-F 276

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                ++ W  D    + W  G TG+P++DA MR+LN  G+MHNR+RM+TASFLVK LL+
Sbjct: 277 KEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFLVKHLLI 336

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GEEYF  +L+D D+++N G WQWAA  G D+ PYFR+FNPT Q +RFD Q  +I+ 
Sbjct: 337 DWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQEEYIKK 396

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           W+PE N +                    YP P++DHK A    +  Y  A K
Sbjct: 397 WIPEYNTM-------------------LYPEPMIDHKFARERAIETYKKALK 429


>gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
 gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
          Length = 450

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 208/468 (44%), Gaps = 25/468 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L  A      +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+         FD           +       ++      +             
Sbjct: 59  EDLKSIGLDLAIF----FDTPKNVFTKLKKEN------FDEILVSVDFDNYAKKRDEEVE 108

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           ++I         L    I+  + Q            ++ L Q++       A  +     
Sbjct: 109 KIIPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNYLEPLHQSNHIEEFKTATNIKKINF 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +           I+   P     +   L     +K+  Y + RD   +   S LS +L
Sbjct: 169 DYDFFPTLQ-DLGFIEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDAGSNLSVHL 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G++S +  +N++K+               ++ ELIWREFY +++  +P          
Sbjct: 228 RFGLISAKMVFNKIKKLQAPKKEI-----DFFIRELIWREFYNYILFHFPKSQFENLNGI 282

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                E   +    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+LVK+LL+DW
Sbjct: 283 EVNWNE---NEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD +  FI+  L
Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +L ++PT+ IH       + ++ L+YP  IV    +    + ++  A
Sbjct: 400 KDLKDIPTKQIHT--ENGIQENIFLDYPKQIVGINYSRDRAILEFKRA 445


>gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans]
 gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans]
          Length = 574

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 150/511 (29%), Positives = 231/511 (45%), Gaps = 36/511 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52
           + A   +S  + W R DLR+ DN AL  A            DA++IA++      WR H 
Sbjct: 65  LPAKADISAVVHWFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHL 124

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCL--QQRV 103
            S  +  F   +L  +++ L Q  +     +        S   + ++W+   C+   Q  
Sbjct: 125 DSGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGN 184

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
             +  N QYE +E+ RD  L  +   +   + + D  ++ PGS+       Y V+TP+ K
Sbjct: 185 VLVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYK 244

Query: 164 ALIQNLVQADLRSLPVP-------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
             ++ L         +                +        +       P   ++     
Sbjct: 245 RWVEYLKSHKQGKEAIKIHAVDQESKVNESLAKFESEAYELSDEFLAYLPCDKLEVPPAT 304

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD- 269
                  +         + Y E++D  ++  TS LS Y++ G++S R+  NR   E  D 
Sbjct: 305 EADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGDS 364

Query: 270 ---LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
                IK  +   +++ E+ WR+FY+H+M  +P + M       T  I+W  D      W
Sbjct: 365 LMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSKW 424

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
             G TG P++DA MR+L   G++ NR RMI ASFL K+LLVDWR GE +F   LLD DLA
Sbjct: 425 CLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADLA 484

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN GGW + +STG D+ PYFRIFN  +Q +R+DP G F++ W+PEL +     I      
Sbjct: 485 SNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRI--IREG 542

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             + D    YP PIVD K +    L  +  A
Sbjct: 543 RSEKDAVDGYPSPIVDLKDSRERALEAFREA 573


>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
 gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1
 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti]
          Length = 545

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 113/515 (21%), Positives = 200/515 (38%), Gaps = 45/515 (8%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60
           M+V+ ++W R+ LR+ DN +L  A  N        ++  +FI   E      +   +  F
Sbjct: 1   MTVNNILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + + L + G      +     +++  +     +  + KL + +  E     RD
Sbjct: 61  LLESLADLDRQLREIGGQLYVFK----GNAVNVMRRLFEELNIRKLCFEQDCEPIWKARD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             ++   +   +      S  L     +          T        +++    R +  P
Sbjct: 117 DAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAP 176

Query: 181 AIRLTG------------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
           +                        ++P +   +++         +  GE  AL  L   
Sbjct: 177 SFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHR 236

Query: 223 CKEKV------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---QCWNRLKEEFVDLLIK 273
            K++       Y+   Q     +   + +S  L  G LS R    C + L E+       
Sbjct: 237 LKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQY 296

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
              G      +LIWRE++  +    P     +          +      L  WK+G TGF
Sbjct: 297 RNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDSLDRWKEGRTGF 356

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+IDAAMRQL   GW+H+ LR ITA+FL +    + W  G ++F+  LLD D +   G W
Sbjct: 357 PMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNW 416

Query: 393 QWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-- 449
            W +S+  + +       +P    +R DP+G ++R +LPEL N+PT Y+H P        
Sbjct: 417 MWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDVQ 476

Query: 450 ----NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 +  +YP P++D   A     N   + +++
Sbjct: 477 KECGCIVGRDYPAPMIDLAAASRANANTMNSIRQK 511


>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
 gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
          Length = 557

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 208/494 (42%), Gaps = 50/494 (10%)

Query: 4   TTAMS------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------H 51
            + M+      + +VW RNDLRI+DN+AL  A  +S A V+ +++  P  + Q       
Sbjct: 54  KSKMTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFP 112

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                ++ FI  S+  ++ +L Q+G+     Q        + + S         ++ +++
Sbjct: 113 KTGELRAQFIMESVANLRDNLRQRGLDLIVRQ----GKPEDVVPSIAKSIGAHTVYAHKE 168

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
               E   +  +++ L +          +    G  L H   +    +       Q    
Sbjct: 169 TCSEETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKG 228

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PIGEQNA----- 215
            +      PA+++   + P               P             P+G  +      
Sbjct: 229 VEYNCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMHFEGGET 288

Query: 216 ----LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
                     + K+++  Y E R+ +     +++ SP+L+ G LSPR   + +K    + 
Sbjct: 289 AALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETER 348

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
           +       +  L ELIWR+++R +   Y +               W+++  L +AW++G 
Sbjct: 349 VAND--STYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELFEAWREGR 406

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P+IDA M++L   G+M NR R I  SFLV+DL +DWR+G E+F + LLD D  SN G
Sbjct: 407 TGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYG 466

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            W + A  GND     R F+   Q   +DP+G ++ HWLP L   P +  + P       
Sbjct: 467 NWTYGAGVGNDPRE-DRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFP------- 518

Query: 451 DLSLNYPLPIVDHK 464
                Y  PIV  K
Sbjct: 519 --GDAYLRPIVPLK 530


>gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 501

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 191/485 (39%), Gaps = 19/485 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  L    HN    ++ ++I  P+       S R   F+  SL+ +Q 
Sbjct: 7   IVWFKRDLRLRDHAPLCRVMHN-PRPILLLYIFEPDLIHDPHYSERHWRFVVQSLVDLQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            LS+        Q           D+   Q  +  ++ + +  I          ++  H+
Sbjct: 66  QLSEFQTQVLVLQ----GAVQTVFDTLLSQCDIGNVYSHEEIGIELTYVRDRAMQQYFHQ 121

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              K  +    +    + +        +    K      + A          +LT     
Sbjct: 122 HHIKWTETPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVSQTMVEQLTHQALA 181

Query: 191 SNIPRFFDYPFQAIDPMFPIG---EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     +    P F IG        +      + K Y         + +  ++LSP
Sbjct: 182 IQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISSPELSRKSCTRLSP 241

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM---G 304
           Y++ G ++ +Q + +L           K    + ++ L W   +        ++ M    
Sbjct: 242 YIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHWHCHFIQKFESECAMEMRPVN 301

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +  +  +I+ +  S  L+AWK G TG PI+DA MR +   G+++ R+R +  S L   
Sbjct: 302 HAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGYINFRMRAMLVSVLSHH 361

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             +DWR+G ++  +Q LD +   +   +Q  A  G       R++NP  Q +  DPQG F
Sbjct: 362 FNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQA--GVTGTNTIRLYNPIKQSQEKDPQGRF 419

Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKNDLSLN----YPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PEL   P   +H P   S +++    ++    YP P+VD + A     ++ ++ +
Sbjct: 420 IKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVVDIEDAAKMARDRLWSFQ 479

Query: 479 KQSLL 483
           K+  +
Sbjct: 480 KRPDV 484


>gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1]
 gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens
           TC1]
          Length = 465

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 135/495 (27%), Positives = 206/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VW R+DLR+ DN AL A     D   +A+++   E             +++ SL 
Sbjct: 1   MKPSIVWFRDDLRVADNPALRA--AVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L + G+     +      + + L           L++NR+Y   E   D  ++  
Sbjct: 59  ALRGDLDKLGVPLLLRRGP----ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVP 180
                +  S   + L   P  +       YKV+TPF + +      + L   +       
Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAVPEAGHGFTG 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            + +   +    +          +  M+  G       L +F  + +  Y E R+ P   
Sbjct: 175 KLPVYDQLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTD 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G+S LSPYL  G LSP + W+ L  +  +           + +EL WREF  H     P 
Sbjct: 235 GSSCLSPYLRWGELSPFEVWHALGSKRSESASI-------YASELGWREFCWHQYFHNPQ 287

Query: 301 VCMGKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPIIDAAMRQLN 344
           +        +                             +AW+QG TGFP++DA  RQL 
Sbjct: 288 LATANLRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQLW 347

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNR+RM+ ASFLVK+L + W++GE++F   L+D D ASN   WQW A +G D+ P
Sbjct: 348 HTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADASP 407

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           +FRIFNP  Q  +FDPQG +I HWLP+                     +  YP  IVD K
Sbjct: 408 FFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIVDLK 448

Query: 465 KACHHTLNQYYAAKK 479
                 L  Y   ++
Sbjct: 449 TTRAEALEAYKEMRE 463


>gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 450

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 301/475 (63%), Gaps = 25/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN A  AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLA-AAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+   F+ SIE + + C Q  V+  +  +       R   + +  
Sbjct: 59  -LQTALAEKGIPLLFHEV-AFNASIETVKNVCRQHDVSHFYNYQYEFNERQRDRAVEKL- 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                +     D  ++     +    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 116 ---PSVICEGFDDSVILAPGAMTGNHEMYKVFTPFKNAWLR-LKEDIPPCVPAPKIRVSG 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             TP   P   +YP Q  D +FP+ E   +  LR+FC +   Y +  RD PA+ GTS+L+
Sbjct: 172 LSTP-LTPVSLNYPQQEFDALFPVEENAVIAQLRQFCAQADEYALR-RDFPAVDGTSRLA 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  +   L   P S    WLNELIW EFYRHLM +YP++C  +P
Sbjct: 230 -SLATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQP 284

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F  WT+++ W ++ H  QAW+ G TG+PI+DAAMRQLN  G MHNRLRMITASFLVKDLL
Sbjct: 285 FR-WTKRVAWQENPHYFQAWQ-GETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDLL 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + WR+GE YFMSQL+DGDLA+N GGWQWAASTG D+ PYFR FNPT QG+RFD  G FIR
Sbjct: 342 I-WRLGERYFMSQLIDGDLAAN-GGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFIR 398

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             LP L ++P + IH P  W  K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 399 Q-LPALRDIPGKAIHEPWRW-AKAGVVLDYPRPIVEHKQAR-ATLSAYEAARKGA 450


>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
 gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
          Length = 478

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 229/476 (48%), Gaps = 25/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR++DN AL AA  +S A V+ VFI      +   + A     +   L  + +
Sbjct: 12  IWWIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDS---QDEDLGAAPRFRLGLGLEHLAQ 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G      +      +++ L     +     + + R Y+     RD L+++ L+ +
Sbjct: 68  RLERLGSRLILRR----GSALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQ 123

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185
            +   S+  ++L  P ++      MY+VYTPF +A+    V     A            +
Sbjct: 124 GVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAPEQWPNS 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE+ A   L +F +  +  Y + RD+PA+ GTS L
Sbjct: 184 DQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLRDLPAVDGTSGL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SP++ W+R  E           GA ++L E++WREF  HLM   P +    
Sbjct: 244 SENLAWGEISPQRMWHRGAEAMAQGAA----GAETFLKEVVWREFAYHLMFHTPHILTKS 299

Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W       N+D+  + AWKQG TG+  +DAAMR+L   G MHNR RMI ASFL K 
Sbjct: 300 WREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVASFLTKH 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FR+FNP  Q  +FDP+G +
Sbjct: 360 MLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKFDPKGRY 419

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
              W+ E N  P     A     P SW    D++   P PI+D K      L  Y+
Sbjct: 420 QAQWIAEGNPKPPDTARAFFTACPKSWQLSADMAR--PRPILDLKAGRERALEAYH 473


>gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
 gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
          Length = 464

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 138/489 (28%), Positives = 212/489 (43%), Gaps = 43/489 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
              + + + L+W R+DLR  DN AL +A       VIAVFI   +      +      ++
Sbjct: 1   MNQSPLPLQLMWFRDDLRTADNPALSSALAA--GPVIAVFILDQQSPGIRPLGGAAKWWL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +  L  ++ +L   GI     +      +   +     Q     + +NR+Y   E   D 
Sbjct: 59  HHGLKSLRAALEDLGIPLVLRKGP----ADSIMTELARQTNAQAVHWNRRYGQPERAVDT 114

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----- 175
             +  L+      +S+  ++L  P  +L      YKV+TPF  AL  + ++  L      
Sbjct: 115 RAKTALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRPPLPAPLGQ 174

Query: 176 -SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            +     I     +    +          +   +  GE  A H L    +     Y E  
Sbjct: 175 DTFSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHH 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P + GTS LSP L  G L   + W+ L     +   K  +GA +   +L WR+F  HL
Sbjct: 235 DRPDLDGTSALSPALRWGHLGAHEMWDALGRLAAE-NPKAGAGATAMRRQLAWRDFCWHL 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-----WKQGYTGFPIIDAAMRQLNTIGWM 349
              +P +        +        +     A     W++G TGF ++DA M+QL   GWM
Sbjct: 294 YYHHPQLPDRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWM 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ AS LVK+L V W++GE +F   L+D D+ASN   WQW A +G D+ PYFR+F
Sbjct: 354 HNRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVF 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP +Q K+FDPQG+++  + P L                          PIVD K++   
Sbjct: 414 NPELQAKKFDPQGSYVSQFAP-LAA-----------------------QPIVDLKQSRLD 449

Query: 470 TLNQYYAAK 478
            L+ Y   K
Sbjct: 450 ALDAYDQMK 458


>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
 gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
          Length = 512

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 187/494 (37%), Gaps = 33/494 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LRI DN +L     N+      +FI  P       +   +  F+   L  +  
Sbjct: 7   VHWFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSDLDN 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        E L     Q   T   +    E     RD+ ++      
Sbjct: 66  SLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSEL 121

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I      S        I+N       +     + +++ +   +     +    L    T
Sbjct: 122 GISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGNAFT 181

Query: 190 PSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+       +    ++             ++  GE  AL  L+   + K +     +   
Sbjct: 182 PTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAFIASFGKPKM 241

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + L+PYL  G LS R  ++ L E +  +         S   +L+WR+F+  
Sbjct: 242 TPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKKIRKSQ--PPLSLHGQLLWRDFFYC 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +I W+K+   L  W  G TG+P IDA M QL   GW+H   
Sbjct: 300 ASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCIA 358

Query: 354 RMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL   DL + W  G + F   LLD D + N G W W + + +    +   + P 
Sbjct: 359 RHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCS-SFYKEFIHCYCPV 417

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             G++ DP G +IR ++P LNN+P +YIH P    +         + ++YPLPIV+H  A
Sbjct: 418 RFGRKVDPNGDYIRRYIPALNNMPNKYIHEPWLAPESIQITANCIIGIDYPLPIVNHINA 477

Query: 467 CHHTLNQYYAAKKQ 480
               + +   A +Q
Sbjct: 478 SKINIERMKLAYQQ 491


>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
 gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
          Length = 475

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 143/488 (29%), Positives = 211/488 (43%), Gaps = 30/488 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+ + +  + +VW+R DLR+TD+ AL+ A   S   VI VFI          + A     
Sbjct: 1   MRMSESSPI-IVWIRRDLRLTDHAALHEA-GRSGRPVIPVFIRD---HGVDSLGAAPKWR 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L    K L  KG             + E L++   +     +++ R Y+   + RD
Sbjct: 56  LGQGLGHFAKLLGDKGSRLVLRAGP----AREVLEALIDETAAGAVWWQRAYDPAAIERD 111

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLR 175
             ++  L+ R          L   P ++       YKVY+PF +A+ +  V     A  +
Sbjct: 112 TAVKAALKDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLAAPSK 171

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             P  +      +    +          ++    +GE+ A   L  F    V  Y + R+
Sbjct: 172 LTPPESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRN 231

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           + A  G S LS  LS+G +SP QCW+               GA +W  EL+WREF  HLM
Sbjct: 232 LVAEDGCSGLSENLSLGEISPAQCWHAAMRARDAGKA----GAETWAKELVWREFAYHLM 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +        W        +      AWK+  TG P +DAA+R++   G MHNR R
Sbjct: 288 WHTPHLLEDNWREEWKAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRAR 347

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  W+IG ++F   L D D ASN  GWQW A +G D+ PYFR+FNP  Q
Sbjct: 348 MIVASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPITQ 407

Query: 415 GKRFDPQGTFIRHWLPELNNVPT-------QYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
            ++FDP   +IR W+ E    PT         I    +    +     YP P+V  +   
Sbjct: 408 REKFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP----YPEPVVSAEDGR 463

Query: 468 HHTLNQYY 475
              L  Y 
Sbjct: 464 KAALAAYE 471


>gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1]
 gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 442

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 214/448 (47%), Gaps = 29/448 (6%)

Query: 32  NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
             D +V+A ++  P    +     R+  ++Y +L  ++ +L  + +V            +
Sbjct: 21  EGDGEVLACYVLDPRL--KSSSGPRRLQYLYDALRDLRDNLDGRLLV-------THGHPV 71

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
           + +         T +  +  +     RRD  +   L    +  +    ++ P G +    
Sbjct: 72  QRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALGGVELVATGSPYLVSP-GRVTKAD 130

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
              YKV+TPF  A   +  +    S P  + R   P   +  P   D P   +    P G
Sbjct: 131 GTPYKVFTPFFAAWRTHGWRPPAGSGPA-SARWIDPDDVTGGPAAADIPDTGLQLELPAG 189

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           E  AL    +F ++ +  Y E R+ P +  TS++S +L  G + PR     L        
Sbjct: 190 ETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLKFGAIHPRTMAADLGR------ 243

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWNKDSHLLQAWKQG 329
                GA ++L EL +R+FY  ++A +P          +   E  +         AWKQG
Sbjct: 244 ---GEGAQAYLRELAFRDFYASVLAEWPDSAWWNWNTAFDAIEVDDDGDAQKSFAAWKQG 300

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TGFPI+DA MRQL   G+MHNR+RMITASFLVKDL + W+ G  +F+ QL+DGD+A+N 
Sbjct: 301 RTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKDLHLPWQWGARWFLEQLVDGDIANNQ 360

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
            GWQWAA  G D+ PYFR+FNP+ QGK+FDP G ++R W+PEL +V    +H        
Sbjct: 361 HGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDYVRRWVPELADVDD--VHK-----LD 413

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            D    YP PIVDH +     L +Y A 
Sbjct: 414 GDRPDGYPEPIVDHGQERAEALRRYRAI 441


>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
 gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (photoreactivating enzyme). (phrB) [Sulfolobus
           solfataricus P2]
          Length = 433

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIKKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++D
Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
 gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
          Length = 478

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 225/483 (46%), Gaps = 27/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I           ++R + F+  SL ++  
Sbjct: 7   LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFDENYSHDFNANSR-AWFLANSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           + ++ G      +     D I  +           +F+N+  E  E+ RD  ++K L+ +
Sbjct: 65  NWNKMGSRLVIEK----GDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKEK 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180
            I        LL   S +                 +++ ++                   
Sbjct: 121 NIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIFQFKDIDN 180

Query: 181 -----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                 I  +     +   +   +P   I P  P        +     ++K+Y Y   RD
Sbjct: 181 KLKENKIINSSDSVLNKFLKNIKFPGSNICPCRPGEVAAESLLKNFINEKKIYSYNSVRD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294
           +P+  GTS LS  L  G +S R+ WN       D      S    +W  EL+WREFY+H 
Sbjct: 241 LPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    ++  W  ++   Q W +G TG PI+DAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FDP   +I+ W+PEL+ V    I    +    N  + NY  PIV+H        + Y
Sbjct: 419 AKKFDPICEYIKSWIPELSKVSNSDI---LNGEISNLENNNYSKPIVNHNIQQRLFKSLY 475

Query: 475 YAA 477
              
Sbjct: 476 AEI 478


>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278]
 gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278]
          Length = 415

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 129/417 (30%), Positives = 199/417 (47%), Gaps = 17/417 (4%)

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
              G      +      + + L     +   + +++N   +    R    +E  L H  +
Sbjct: 2   QSLGSDLVIRRGP----AAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGV 57

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG----P 187
             + F D +L+ P ++     +  +V+TPF K ++           P     +       
Sbjct: 58  ASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPARLPMVPDVTGLT 117

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V    +          +   +  GE+ A   LR F +  V  Y   RD P I  TS+LSP
Sbjct: 118 VDDLRLEPTKPDWAGGLRATWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G ++PRQ W+  +    +       G   +L+E+ WREF RHL+   P +      
Sbjct: 178 HLRFGEITPRQIWHAARFA-AEERPAQAKGIDKFLSEIGWREFSRHLLYNNPDLASRN-L 235

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  +   W +D   L AW++G TG+PI+DA +R+L   G MHNR+RM+ AS LVK LL+
Sbjct: 236 QPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLI 295

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG++FD  G+++R 
Sbjct: 296 DWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRR 355

Query: 428 WLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  +P   IH P +            L  +YP PI+DHK+     L  Y + +
Sbjct: 356 WVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAYASLR 412


>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
 gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
          Length = 499

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 122/478 (25%), Positives = 210/478 (43%), Gaps = 36/478 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIY 62
           V ++W RNDLRI DN+AL+ A  +S + V+ V+   P        ++       ++ F+ 
Sbjct: 24  VSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGELRAQFLL 82

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ ++K+L ++G+           +    L           ++   +    E++ +K 
Sbjct: 83  ESLVDLKKNLKKRGLDLVIRS----GNPEFILPLLVEAVGAHTIYAQEETCSEELQVEKA 138

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++K +  +   +    + +     +     ++  VYT FRKA+  +        LP    
Sbjct: 139 VKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQTLG 198

Query: 183 RLTGPVTPSNIPRFFDYPFQAI-----------DPMFPIGEQ--NALHILRKFCKEKVYY 229
            L   +               +              F  GE           + K  +  
Sbjct: 199 PLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQRLCEYFWTKNCLRN 258

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +     +++ SP+L+ G +SPR  +     ++ +      +  +  L ELIWR
Sbjct: 259 YKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKY-EKERTANNSTYWVLFELIWR 317

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   Y +               W++D  L +AW+ G TG+P+IDA MR+L   G+
Sbjct: 318 DYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMRELYATGF 377

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G W + A  GND     R 
Sbjct: 378 MSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 436

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           F+   Q + +DP G+++ HW+P+L  +PT   H+P          + Y   IV  + +
Sbjct: 437 FSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSP---------KVGYLKKIVPLRFS 485


>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
 gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
          Length = 441

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 126/477 (26%), Positives = 211/477 (44%), Gaps = 42/477 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V  R+DLR+TD+ AL+ A  + +  V+ +++   E      +      +++ SL 
Sbjct: 1   MTT-VVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   LS+ G+     +      + + +     +    +L +NR+Y   E   D  L++ 
Sbjct: 59  SLASDLSELGVPLTLRRGP----AGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEW 114

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVP 180
                +   S+  S++  P ++       Y+V+TPF +A       +    A        
Sbjct: 115 AGENGVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHAD 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +  +    +          +   + +GE+ A   L +F  E++  Y + RD+PA  
Sbjct: 175 PAPASEDLVDWELLPTHPDWSGGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LSP+L  G +SP   W+   E   +           +L E+ WREF  + +  +P 
Sbjct: 235 ATSGLSPHLRWGEISPYTVWHTALERAENPGK--------FLTEVGWREFSWYNLYVHPD 286

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +        D  +L AW+ G TG P++DA M +L   G M NR+RM+ AS 
Sbjct: 287 MATENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASL 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR+GE++F   L+D D ASN   WQW A  G D+ PYFRIFN   Q K+FDP
Sbjct: 347 LAKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDP 406

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              ++  W                   +     +    PIVD K++  H L  + + 
Sbjct: 407 DFVYVDRW-------------------NGRQEGV---EPIVDLKESRAHALELFKSL 441


>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
 gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
          Length = 524

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 207/486 (42%), Gaps = 30/486 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54
           M  +      +  LRNDLR  DN+AL  A  N+D  V+ ++   P+ ++          +
Sbjct: 1   MATSKTQKTVICLLRNDLRYHDNEALLWAHKNADF-VLPLYCFDPDHYKTTWRFSLPKTA 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ F+  S+  ++ +L   G      QC   +   +  +       VT + + ++   
Sbjct: 60  QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            E+  +K L +  +   I         L     + +  +         +  ++N      
Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL------------RKF 222
                  ++   PV                  +  + +++A   +              +
Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239

Query: 223 CKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
             + V  Y E R+       +++LSP+L+ G LSPR  ++R+K+   + +       +  
Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANH--STYWV 297

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L ELIWR++++ +   Y      +  I   + + W  D    + W +G TG P +DA MR
Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGI-MGKSLPWKHDKMTFKLWCEGKTGVPFVDANMR 356

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GWM NR R   ASFL+KDL +DWR G E+F S LLD D+ SN G W +AA  GND
Sbjct: 357 ELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGND 416

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN 455
                R FN   QG  +DP G +I+ W+PEL  +P   +H P +           +L + 
Sbjct: 417 PRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELRSSGVELGVT 475

Query: 456 YPLPIV 461
           YP PIV
Sbjct: 476 YPNPIV 481


>gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
          Length = 433

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 209/474 (44%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+D
Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +  ++ IH  + +  K     NYP PIVD +   +     Y   +K  +
Sbjct: 384 VDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRFYEVCRKSKI 432


>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
          Length = 525

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 124/480 (25%), Positives = 202/480 (42%), Gaps = 36/480 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------------RQHGISARQS 58
           +VW RNDLR+ DN+ L  A   S   V+ V+     Q+            +       ++
Sbjct: 11  VVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGRPRA 70

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G               E +     Q   T++F +++    EV 
Sbjct: 71  RFLIESVDDLRTRLQELGSGLVVRTGL----PEEEVARVAAQVGATQVFAHQEVCSEEVA 126

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            +  L+++L+  +       ++              +  V+T FRK +  ++    + + 
Sbjct: 127 AEHRLKRQLEVPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRVEADMHVRPVVAA 186

Query: 178 PVPAIRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YY 229
           P     L   +   +IP           P +     F  GE  A   L+ +  E      
Sbjct: 187 PARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLPFKGGETAARARLQYYLWESNLLAS 246

Query: 230 YVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+       +S+ SP+L+ G L+ R  ++ +K    +         +  + EL+WR
Sbjct: 247 YKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERTENT--STYWLIFELLWR 304

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R +   + +    KP     + + W       +AW+ G TGFP IDA MR+L   G+
Sbjct: 305 DYFRFVALQHGTAIF-KPGGVQHKDVPWRHSPADFEAWQNGQTGFPFIDANMRELAKTGF 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL KDL +DWR+G E+F + LLD D  SN G W +AA  GND     R 
Sbjct: 364 MSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAAGVGNDPRQ-GRH 422

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD 462
           FN   Q K +DP   ++  W+PEL  +     H P     +        L   YP P+VD
Sbjct: 423 FNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANIQLGSTYPRPVVD 482


>gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
 gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
          Length = 433

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 206/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K   
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++D
Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
          Length = 478

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 149/484 (30%), Positives = 221/484 (45%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           L W R DLRI DN+AL  A   S+A + + +I        H  SA  ++ F+  SL ++ 
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYILDRNY--THDFSANSRAWFLGDSLQELG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +  + G      +     D +  +           + +N+  E  E+ RD  ++K L+ 
Sbjct: 64  NNWEKMGSRLVIEE----GDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------------QADL 174
           + I        LL     +                 +++ +               +   
Sbjct: 120 KNIQVIESWDHLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDID 179

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             L    +  +   T     +   +    I P  P      + + +   ++ +Y Y   R
Sbjct: 180 NKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRPGENGAEILLEKFINEKNIYSYNSAR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           D+P+  GTS LS  L  G +S R+ WN   +   D      S    +W  EL+WREFY+H
Sbjct: 240 DLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFYQH 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR 
Sbjct: 300 CLFHFPELEKG-PYRKKWGQFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP   +I+ W+PEL+ V    +    +    N    NY  PIVDH        + 
Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDL---LNGEISNLEKNNYSTPIVDHNIQQRLFKSL 474

Query: 474 YYAA 477
           Y   
Sbjct: 475 YAEI 478


>gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
 gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
          Length = 470

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 141/483 (29%), Positives = 218/483 (45%), Gaps = 27/483 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M++    ++W R D R+ D++AL+AA  NS+  VI V +            A     +  
Sbjct: 1   MTLSKPIIIWFRKDFRLADHQALFAAS-NSERPVIPVVVLDEL---TQTYGAAPKWRLSK 56

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++      L+Q G      +      + + L +   +     +++ R Y+ + + RD  +
Sbjct: 57  AIEHFADRLNQVGSRLILRRGP----AAQELLALAQETGAGDIWWTRAYDPDAIARDTKV 112

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178
           +  L       KS+   +L  P ++       +KVY+P  +A+    +     A    + 
Sbjct: 113 KSTLTDAGFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAAPSPAPKFLMA 172

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                ++ P+    + +      + +     +GE  A   L +F    +  Y E+RD PA
Sbjct: 173 PETWPVSDPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYKERRDYPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LS  L+ G + P   W+      ++       GA  +L EL+WREF  HL    
Sbjct: 233 LNATSGLSENLAWGEIGPATVWHAGLRAHLEGQ----RGAEHFLKELVWREFAYHLAFHT 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        W +      +   +  WKQG TG P++DAAMR+L   G MHNR RMI A
Sbjct: 289 PKITQENWKSQWNDFPWSEHEDEAVLRWKQGRTGVPLVDAAMRELYVTGHMHNRSRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K +L  WRIG+++F   L+D D A+N  GWQW A  G D+ PYFRIFNP  Q K+F
Sbjct: 349 SFLTKHMLKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D +  +I+ +L E    P     A     P +W    D    YP PIV   +  H  L  
Sbjct: 409 DAEQQYIQRFLAERAPTPGPEALAFFDACPRAWALSKDDP--YPTPIVGLAEGRHRALTA 466

Query: 474 YYA 476
           Y A
Sbjct: 467 YAA 469


>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
 gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
          Length = 499

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/478 (25%), Positives = 209/478 (43%), Gaps = 36/478 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIY 62
           V ++W RNDLRI DN+AL+ A  +S + V+ V+   P        ++       ++ F+ 
Sbjct: 24  VSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGELRAQFLL 82

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ ++K+L ++G+           +    L S         ++   +    E++ +K 
Sbjct: 83  ESLVDLKKNLKKRGLDLVIRS----GNPEFILPSLVEAVGADTIYAQEETCSEELQVEKA 138

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++K +  +   +    + +     +     ++  VYT FRKA+  +        LP    
Sbjct: 139 VKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQTLG 198

Query: 183 RLTGPVTPSNIPRFFDYPFQAI-----------DPMFPIGEQ--NALHILRKFCKEKVYY 229
            L   +               +              F  GE           + K  +  
Sbjct: 199 PLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQRLCEYFWTKNCLRN 258

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +     +++ SP+L+ G +SPR        ++ +      +  +  L ELIWR
Sbjct: 259 YKETRNGMLGADYSTKFSPWLASGSISPRFIHEEASIKY-EKERTANNSTYWVLFELIWR 317

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   Y +               W++D  L +AW+ G TG+P+IDA M++L   G+
Sbjct: 318 DYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMKELYATGF 377

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G W + A  GND     R 
Sbjct: 378 MSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 436

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           F+   Q + +DP G+++ HW+P+L  +PT   H P          + Y   IV  + +
Sbjct: 437 FSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFP---------KVGYLKKIVPLRFS 485


>gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 429

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 146/433 (33%), Positives = 219/433 (50%), Gaps = 18/433 (4%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
           +    + ++  FIY  L  ++++L + G          F D +  +           +F 
Sbjct: 3   KLKNKNDQRVDFIYQVLQDIKQTLKKYGSDIWIL----FGDPVHEIPKLAESINANAIFV 58

Query: 109 NRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
           NR YE   V RD  ++K+L       +SF D VL     I+      Y V++P+R   ++
Sbjct: 59  NRDYEKYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLE 118

Query: 168 NLVQADLRSLPVPAIRLTGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
            L+ +           +T     +          +    I           +       K
Sbjct: 119 KLLISGSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEFK 178

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +++ +Y + R+ PAI+G S LS +   G +S R+  N   + +        SG+ SWLNE
Sbjct: 179 DRLEHYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNE 232

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWR+FY  ++  +  V  G  F    + +++  +    ++WKQG TGFPI+DAAMRQLN
Sbjct: 233 LIWRDFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLN 292

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T G+MHNRLRMI ASFL KDLL+DWR GEEYF  +L+D D ++NNGGWQWAAS G D+ P
Sbjct: 293 TTGYMHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQP 352

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           +FRIFNP +Q ++FD  G FI+ ++PEL+    + IH PH+         +YP PI+DH 
Sbjct: 353 WFRIFNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTP----KDYPKPIIDHA 408

Query: 465 KACHHTLNQYYAA 477
                 L  +   
Sbjct: 409 TQRPKALKMFEHV 421


>gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 498

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 168/483 (34%), Gaps = 27/483 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI D+  L  A       V+A+F+  PE       SA    FI   L  +
Sbjct: 1   MEIVWFKRDLRIRDHAPLADAVAA--GPVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L ++G             + + L+    QQ    L  +++       +         
Sbjct: 59  HAALQERGGELV----EMTGSAPDMLEQIWQQQPFATLRSHQETGNRASYQRDEQVAAWC 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +                    A + + +      +  + +              LTGPV
Sbjct: 115 RKRGVTWRQSPQNGVIRGQEARAKRDW-IAELDDYSSSEPVKPPRHIVPSKLPPMLTGPV 173

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                   IG   A    R                 A  G S+LSP+
Sbjct: 174 APLQAAGHDKPGRMKGGRAEAIGLLTAFIRTRILRYPYAISSPIT----AEHGCSRLSPF 229

Query: 249 LSIGVLSPRQCWNRLKEE--------FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+ GV++ R+    +                 +  S    + + L WR  Y   M   P 
Sbjct: 230 LAYGVITMREIVLAMNRRVDSAELAVNEAERERLISALRFFADRLRWRAGYFQNMESMPR 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +             E   D      W++G TG+P++DAAM+ L+  GW++ R+R +  SF
Sbjct: 290 LEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWLNMRMRGMLLSF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            V +L + WR    +   + +D + A +    Q     G         +NP  Q +  DP
Sbjct: 350 AVNELWLHWREPALFLAREFVDYEPAIHYN--QMQIHAGTAGAGSMLAYNPVKQAQELDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
           +G F+R WLP L  VP  YI  P +            +  +YP P+VDH  A     ++ 
Sbjct: 408 KGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDHLDAARQARSRV 467

Query: 475 YAA 477
             A
Sbjct: 468 ADA 470


>gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 437

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 219/476 (46%), Gaps = 49/476 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63
           +A+   + W R DLR+ DN AL+ A  NS+A V  VFI       R    +  +  FIY 
Sbjct: 2   SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q+ L   G   +    + + +     +    +   T ++ N  YE   + RD L+
Sbjct: 61  QLQLLQEQLKPYGSSIR----TYYGEPATVWEEIYEEYTPTAVYVNSDYEPAAITRDLLV 116

Query: 124 EKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181
              LQ   +  +      +     I+ +    Y VYTP++   +  L +   L S     
Sbjct: 117 RGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEEQLPLPSYTSEN 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
           +          +P   D  F      FP           K     +  Y + RDIP    
Sbjct: 177 LLKNLRQASYALPSLQDLGFSLSTIPFP----------EKTFFTAIADYADTRDIPGLEN 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS L  +L  G +S R+   R             S   ++L+ELIWREF+   +  +P 
Sbjct: 227 GTSHLGIHLRFGTISIRKLVERA----------YPSQNKTYLHELIWREFFMMCLWHFPH 276

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TASF
Sbjct: 277 TVNHAYY-SKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPT+Q K+FDP
Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           Q  +I+ W+PE  +                     YP PIV+H  A    L +Y A
Sbjct: 396 QFVYIKKWVPEFQDFS-------------------YPPPIVEHAWARDRALARYKA 432


>gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
 gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
          Length = 433

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEEIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++D
Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group]
          Length = 697

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 133/482 (27%), Positives = 216/482 (44%), Gaps = 25/482 (5%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  +  SL + 
Sbjct: 23  RDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRL 81

Query: 76  G-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVIC 133
           G       + +   D++  L         T+LF+N  Y+   + RD    E      +I 
Sbjct: 82  GAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIV 138

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
           +SF+  +L  P  +++   Q + ++ PF    +          LP   I         + 
Sbjct: 139 QSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSD 198

Query: 194 PRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              F+   +      +   +  G QNA   L  F    + +Y   R       TS LSPY
Sbjct: 199 DLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPY 258

Query: 249 LSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P     
Sbjct: 259 LHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP-CSHE 317

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK 
Sbjct: 318 KPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 377

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FDP G +
Sbjct: 378 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEY 437

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHTLNQYY 475
           +R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     L++ +
Sbjct: 438 VRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMW 497

Query: 476 AA 477
             
Sbjct: 498 QL 499


>gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
 gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
          Length = 433

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 208/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++D
Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K+     YP PIVD +   + +   Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLSKRLYEVCRKSKI 432


>gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
          Length = 433

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 208/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+D
Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +D +  +++ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +  ++ IH  + +  K     NYP PIVD +   +     Y   +K  +
Sbjct: 384 VDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 493

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 171/482 (35%), Gaps = 42/482 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+TD+  L  A     A  +A+FI  P          R   ++   L 
Sbjct: 1   MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L+ +G+           +++E L +   +   T+LF + +              R
Sbjct: 59  PLRDALAARGLPLLVRT----GEAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                     +         + +      +         ++      + +    A     
Sbjct: 115 WCRAHGVAWTEWPQTGVIRRLKDRRGWAGRWQQRMDAPCVR------VPAGWRAAPGFAP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
              P+++P   +          P GE  A  +L+ F   +   Y      P  A  G S+
Sbjct: 169 STLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEAGCSR 228

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LS +L+ G LS R      +        +        +   L W   +   +   P++  
Sbjct: 229 LSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEPAIEW 288

Query: 304 GKP------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                      P         D   LQAW +G TGFP++DA MRQL   GW++ R+R + 
Sbjct: 289 RNFARSADGLRPGDGSALQTADRERLQAWCEGRTGFPMVDACMRQLRATGWLNFRMRAML 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF    L + WR    +   Q LD +   +    Q    +G   +   RI++P  Q   
Sbjct: 349 VSFAAYHLWLHWREPGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPAKQALD 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DPQG ++R W+PE                     S  YP PIVD + A      + Y  
Sbjct: 407 HDPQGEYVRRWVPEFG-------------------SAAYPAPIVDERAAVAAAKQRLYGL 447

Query: 478 KK 479
           ++
Sbjct: 448 RQ 449


>gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4]
          Length = 482

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 104/472 (22%), Positives = 177/472 (37%), Gaps = 16/472 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ D+R+ D++ LY A    +  V  V++  P  W+   +S R  HFI  SL ++
Sbjct: 1   MNIVWLKRDIRLQDHRPLYEASLRGETLV--VYVVEPSIWKDEPLSMRHLHFILESLEEM 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q S +  G            + I+ L     Q    +L+ +++Y    +     + K   
Sbjct: 59  QNSFNSIGGKLAVFH----GEMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKDWM 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +      +           +      +      + ++   ++         +       
Sbjct: 115 EKNGLHWTEYQATAISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAPDKLPSSFIKDLAG 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGT-SQLS 246
                      P   I      GE  A   L+ F  E+  +Y     +  A   + S+LS
Sbjct: 175 YKKKSQGIKGEP---IRFGQQGGELLAWDTLQTFLDERFVHYETNQMNPLASSISGSRLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +S R  +  +                 +L+ ++ R+ + H             
Sbjct: 232 PYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRD-FLHQRLIENPTLHQYS 290

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  + +  N  S       QG TG PI+DA +R L   GW++   R +   F+ + + 
Sbjct: 291 LHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRSLKLTGWLNESTRKMIVMFMCQTMR 350

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             W+       S  LD D   +    QW A T     P  R+ NP   GK  DP G F++
Sbjct: 351 QSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSKPP--RVVNPIKIGKEQDPNGEFVK 408

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++ EL  VP +YIH P  +     L   YP PIVD  K    +  ++   K
Sbjct: 409 RYVQELKTVPVEYIHEPWKYPGVFSLQ--YPAPIVDVVKVNKESRRKFKEIK 458


>gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
 gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
          Length = 433

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 206/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + +  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRRYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K          +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIGRARQIDYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +  V             + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  L QAW +G TG+PIIDA MRQLN  G + NR+RM+TA FLVK LL+D
Sbjct: 266 REYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
 gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
          Length = 477

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 230/463 (49%), Gaps = 25/463 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TD     AA   + A ++A+FI   +      +      +++ SL+ +  
Sbjct: 6   ILWFRRDLRLTD-NLALAAAATTGAPLVALFILDED--DDPPLGGAARWWLHHSLVSLTH 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++G+     +      S   L     +     +F++R YE   +RRD  +E  L+  
Sbjct: 63  DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184
            +  +SF  ++L  PG I +   + ++V+ PF +A            A  R    PA R 
Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRAAQAIVAPGAPKPAPTRLRAAPAPRS 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    PR  D+     D   P GE  A   L  F ++ V  Y   RD PA    S+
Sbjct: 179 ERLEDWGLTPREPDWAGGLRDAWRP-GESGARARLDAFVEDGVRDYAAARDFPAKDNVSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G + PRQ W  +     +    P++   ++L EL WREF  H++  +PS+   
Sbjct: 238 LSPHLHWGEIGPRQVWRAI-----EGADAPRADIAAFLRELGWREFCHHILLDHPSLPEA 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +        D  L +AW +G TG+P +DA MRQL   GWMHNRLRMI ASFLVK 
Sbjct: 293 PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASFLVKH 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +F   L+D DL+SN   WQWAA  G D+ PYFRIFNP +QG+++D  G F
Sbjct: 353 LLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDADGAF 412

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +R ++PEL  +   YIH P +  ++        L   YPL I+
Sbjct: 413 VRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455


>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
 gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
          Length = 473

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 136/475 (28%), Positives = 212/475 (44%), Gaps = 25/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+ AL AA       ++ +FI       Q      +  F   S+  + +
Sbjct: 8   ILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVVEGQGAAPKMRLGF---SVEALDR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      +++ L     +     ++++R Y+     RD  ++  L+  
Sbjct: 64  SLHGTGSRLVLRR----GRALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSALKDD 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185
            +  +SF   +L  P ++       YKV+TP  KA+    +     A  R         +
Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPVSTPAPNRLEAPQEWPAS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GEQ AL  L  F  E+V  Y   RD+P + GTS+L
Sbjct: 180 DALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPRVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G ++P  CW+         L    + A  +L EL+WREF  HL+   P +    
Sbjct: 240 SENLTYGEIAPLTCWH----AGWAALNHGDADAEVFLKELVWREFAYHLVHHTPHITTDN 295

Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W        ++     AWKQG TG   +DAAMR++   G MHNR RMI AS+L K 
Sbjct: 296 WKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+  W+IG ++F   L+D D ASN  GWQW++ +G D+ PYFR+FNP  Q  +FD    +
Sbjct: 356 LMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLDKFDKNREY 415

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +  W+ E  + P           P  W  K   + +YP P+V  +      L+ Y
Sbjct: 416 VDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAALDAY 468


>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
 gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
          Length = 473

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 220/478 (46%), Gaps = 29/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R DLR++D+  L+ A   S   VI VFI      +   + A     +   L    +
Sbjct: 8   IVWIRRDLRLSDHATLHEA-GKSGRPVIPVFIRDHTVDQ---LGAAPKWRLGLGLGCFGE 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++KG             + E LD+   +     +++ R Y+   V RD  ++  L+ R
Sbjct: 64  ALAEKGSRLILRAGP----AREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSALKDR 119

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  +SF   +L  P ++       YKVYTPF +A+        + A  +     +   +
Sbjct: 120 EIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPAPSKLAAPESWPES 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          ++P   +GE+ A   L  F   K+  Y + R++ A  G S L
Sbjct: 180 DALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRNLVAEDGCSTL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++G +SP QCW+               GA +W  EL+WREF  HL+   P +    
Sbjct: 240 SENLALGEISPAQCWHAAMRAKDAGKE----GAETWAKELVWREFAYHLLWHTPHLAESN 295

Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W       ++    + AWK+  TG P +DAA+R++   G MHNR RMI AS+L K 
Sbjct: 296 WREEWAAFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRARMIVASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+  W+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FDP   +
Sbjct: 356 LMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPITQREKFDPDKVY 415

Query: 425 IRHWLPELNNVPTQ-------YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +  W+ E  + P +        I    +    +     YP PIV  +      L+ Y 
Sbjct: 416 VDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA----YPEPIVSAEDGRKAALDAYQ 469


>gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 438

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 211/473 (44%), Gaps = 45/473 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR  DN  L  A   S  KV+ +FI   E          +  FI   L ++
Sbjct: 5   IVIFWFRRDLRYNDNTGLSKALL-SGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEI 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +        FQ    S  +  +    S        +V  ++ N  YE   V+RD  ++ 
Sbjct: 64  NQ---HFNTQFQSGVQSYHNSPLNVFKSLLEAANDFKVCGVYTNEDYEPYAVQRDLEIKA 120

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  + +   SF D V+     +     + Y VYTP++   +    Q          + L
Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQYPNGFQEIDMPL 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +           +   +          ++  +  ++ +  +E        GTS+
Sbjct: 181 ENLYKMNTSLHDMKALGFSSAEIEVPKYSVTSALIEAYEAKRNFPSIEN-------GTSK 233

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L P+L  G +S R    + K +   +          +L+ELIWREF+  ++  +P     
Sbjct: 234 LGPHLRFGTVSIRALVQKAKGQKNQV----------FLSELIWREFFMQILWHFPHTPT- 282

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++IEW  ++   + WK G TG+P++DA MR+LN  G MHNR+RM+ ASFL K 
Sbjct: 283 NAFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVASFLCKH 342

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q  +FD Q  +
Sbjct: 343 LLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKFDKQHIY 402

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++ W+ +L  +                    YP PIVDHK A    L  Y  A
Sbjct: 403 LKKWVSDLGEL-------------------TYPSPIVDHKMARERCLATYKKA 436


>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 505

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 132/509 (25%), Positives = 221/509 (43%), Gaps = 47/509 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           MK      + +VWLR +LR+ DNK    A  +S  K+I +FI      +       R+  
Sbjct: 3   MKK-----ISIVWLRRNLRLEDNKPFAEALKSSK-KIIPIFIFDTTILQNFSNPLDRRLS 56

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  ++  +   L +            + +S+E +     +  +  ++ + +Y+   V R
Sbjct: 57  FLANTIYNLNSELQELEGNLLVL----YGNSVEIIPKLIEKLNIQTIYADEEYDPENVIR 112

Query: 120 DKLLEKRLQHR--------------------VICKSFDDSVLLPPGSILNHALQMYKVYT 159
           D+ +   L+                         K +         +   +  +      
Sbjct: 113 DQKITNLLEFNGKSKLELVCDHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYLRKNCSCIE 172

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
                L   LV  +   L    +++       S I     Y +Q  +   PI  +N L+ 
Sbjct: 173 RSNYRLDHRLVSLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNN 232

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIK 273
             +            +++  +  +S +SPYL  G++S R+C+++      K    D  I 
Sbjct: 233 FIQNNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIG 292

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                  W++ LI REFY  L+  +P+    +    +   I W KD  +   + +G TG+
Sbjct: 293 KTEKEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKTGY 352

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P+IDA+++QL   GWMHN  R I A+F  K LL+DWR+GE +F   L+D +LASN G WQ
Sbjct: 353 PMIDASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGSWQ 412

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           WAAS G D   + R+F P  QG++FD +  +I+ +LP L NV  + IH  H        S
Sbjct: 413 WAASCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVH-------FS 465

Query: 454 LNYPL---PIVDHKKACHHTLNQYYAAKK 479
             YP    PI+D++ +   + N +   KK
Sbjct: 466 KKYPNYLTPIIDYQLSKDKSSNFFKQIKK 494


>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 469

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 211/478 (44%), Gaps = 20/478 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   + W+R D RI DN AL AAC  S   VIA+FI   E    HG + +    +   + 
Sbjct: 1   MKPVIYWVRRDFRIGDNAALSAAC-ASGRPVIALFICD-EVVEGHGAAPKFR--LGEGVR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
               +L++ G      +     D++  L    +Q  V  +++NR Y+     RD  ++  
Sbjct: 57  VFGAALAEAGSRLILRR----GDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAA 112

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPA 181
           L+   I  +     L   P ++       Y+V+TP  K +        + A         
Sbjct: 113 LKDDGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDV 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +  +    +          +     +GE+ A   L  F  E+V  Y   RD+P++ G
Sbjct: 173 WPASDQLDDWKLGGAMRRGRDVLAAHICVGEEAARSRLDTFIDERVQSYQTNRDMPSVDG 232

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G +SP  CW+           +       +  EL+WREF  HL+   P +
Sbjct: 233 TSRLSENLTYGEISPAVCWHAGWAAIHSGKGQA----EVFCKELVWREFAYHLVHHTPHI 288

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   W        D+  + AWKQG TG P +DAAMR++   G MHNR RMI AS+L
Sbjct: 289 VDRNWKEGWDAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGRMIVASYL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L+  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD  
Sbjct: 349 TKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDHA 408

Query: 422 GTFIRHWLPELN-NVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
           G + R W+ E     P   +    +      L+ +  YP P+VD        L  Y  
Sbjct: 409 GLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAPSDVYPAPVVDMATGRQRALEAYKD 466


>gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
 gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
          Length = 479

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 136/497 (27%), Positives = 218/497 (43%), Gaps = 32/497 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T     L W R DLR+ D+  L  AC  +   VI VFI  P   +   + A     
Sbjct: 1   MSNRTP---VLFWFRRDLRLADHPGLV-ACQAARVPVIPVFILDP---QTEALGAAAKWR 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++   ++ L   G      +      + E L     +    ++ ++R Y  + + RD
Sbjct: 54  LGLAIASFRERLQAIGSDLILRRGP----AKETLLELLEETGACEVHWSRNYTPDAIERD 109

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175
           + ++  L+       S     L+ P ++   A   ++VY+P+ +A     I  +V     
Sbjct: 110 QEVKTALKRAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVPEIEA 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                    +  +    +    +   + +     +GEQ AL     F  E    Y   RD
Sbjct: 170 LPAPALWPRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRD 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +  TS LS  L+ G +SPR  W+ +           + G  ++L EL+WREF  HL+
Sbjct: 230 RLDLAATSLLSENLTYGEISPRTIWHGVCA----SGGDQEQGGETFLKELVWREFSYHLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +              W  D+     W++G TG P+IDAAMRQ+   G MHNR RM
Sbjct: 286 YHTPHITQRNW-RAEWNAFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + AS+L K L+  W+IG ++F   L+D D A+N  GWQW A +G D+ P+FR+FNP  Q 
Sbjct: 345 LVASYLTKHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQA 404

Query: 416 KRFDPQGTFIRHWLPELN-NVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACH 468
           ++FDP   + R ++ EL  + P +   A     P  W    +    YP  P+++ K+   
Sbjct: 405 EKFDPDAVYRRRYVAELAGDNPGEAALAYFDACPRHWSLDPE--QKYPEAPLIELKRGRE 462

Query: 469 HTLNQY--YAAKKQSLL 483
             L  Y  Y  K + ++
Sbjct: 463 RALEAYQHYVVKNKPII 479


>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
 gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
          Length = 431

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 205/472 (43%), Gaps = 47/472 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  N + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + S          + N  Y      RD+ + K  +
Sbjct: 63  NDELGKRGSRLYVY----FGLAEEVIKSLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R       +  LL   +   +       Y   +   ++  +Q +  +    ++     +
Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKNYKNFTTFYNAVKNKQVRKPIQNNYTNYYKNSLGDEYEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            PS                   GE+       K           +RD  A    + LSP+
Sbjct: 177 PPSQ------------------GERGGRKEGLKLIDRAKQIDYSRRDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSVREVYYSLVDNQA------------IIRQLYWRDFYT-LLAYYNERVFYEPLR 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  LLQAW  G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+D
Sbjct: 266 REYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+IGE YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ W
Sbjct: 326 WKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYIKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + EL +   + IH  + +  K     NYP PIVD +   +     Y   K Q
Sbjct: 384 VKELEDYDAKIIHNAYKYTLK-----NYPNPIVDWRIRINLAKRLYERCKDQ 430


>gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
 gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
          Length = 577

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/486 (25%), Positives = 208/486 (42%), Gaps = 48/486 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S+A ++ V+   P  +            A ++ FI 
Sbjct: 79  VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L ++G+              + + S     +   ++ +++    EV+ +K+
Sbjct: 138 ECLNDLKRNLVKRGLDLLIQH----GKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKM 193

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           + + LQ  V   S         G+     L                    D+ +    ++
Sbjct: 194 VTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSV 253

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219
                V           P   +     + + +                            
Sbjct: 254 EYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHD 313

Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             + K+ +  Y E R+ +     +++ SP+L+ G LSPR  +  +K    + L       
Sbjct: 314 YFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERLSND--ST 371

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           +  L ELIWR+++R L     ++   +   P    I W++D  +  AW++G TG+P+IDA
Sbjct: 372 YWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDA 430

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  
Sbjct: 431 NMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 490

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           GND     R F+   Q + +DP+G F+ +WLPEL  +P +  H+P            Y  
Sbjct: 491 GNDPRE-DRYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSPGMM---------YLN 540

Query: 459 PIVDHK 464
           PIV  K
Sbjct: 541 PIVALK 546


>gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
 gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
          Length = 478

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 218/483 (45%), Gaps = 27/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN++L  A   S+A + + +I           ++R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+N+  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLIMEE----GDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I        LL     +                 +++ +           +     +  
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180

Query: 191 SNIPR---------------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                                  +P   I P  P        +     ++K+Y Y   RD
Sbjct: 181 KLKENKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETILENFINEKKIYSYDSARD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294
            P+  GTS LS  L  G +S R+ WN       D   +       +W  EL+WREFY+H 
Sbjct: 241 FPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FDP   +I++W+PEL+ V    +    +    N    NY  PIV+H        + Y
Sbjct: 419 AKKFDPICEYIKYWIPELSKVSNSEL---LNGEISNLEKNNYSSPIVNHNIQQRLFKSLY 475

Query: 475 YAA 477
              
Sbjct: 476 AEI 478


>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
 gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
          Length = 550

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 121/502 (24%), Positives = 195/502 (38%), Gaps = 37/502 (7%)

Query: 12  VWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGI---------SARQ 57
           VW R  LR+ DN AL     Y A   S  ++  VF+  P   R                +
Sbjct: 12  VWFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAASSPGSARAGVAR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  SL  +      + +  +       DD  + + +      + KL +    E   +
Sbjct: 72  IRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYAL 129

Query: 118 RRDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            RDK +        I      S     P   I  +  +    Y  F     +        
Sbjct: 130 ARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSIAGEPPDPIMEE 189

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEK 226
              +P +  TG      +P   +  +  I        +             +  K    K
Sbjct: 190 YSELPPLGDTGEYELLPVPTVEELGYVDISEEEIPPFRGGETEALRRMKESLQNKEWVAK 249

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
                          T+ LSPYL  G LS R  ++ +++ +  +    K    S + +L+
Sbjct: 250 FEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTKPPV-SLIGQLL 308

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+F+  +    P+    K      ++I W+++  L  AW+ G TG+P IDA M QL   
Sbjct: 309 WRDFFYTVSYGTPNFDRMK-GNKICKQIPWSENEELFVAWRDGQTGYPWIDAIMIQLRKW 367

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GWMH+  R   A FL + D+ + W  G + F   L+D D A NNG W W + +      Y
Sbjct: 368 GWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-Y 426

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
            RI++P   GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P
Sbjct: 427 HRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKANCIIGKDYPKP 486

Query: 460 IVDHKKACHHTLNQYYAAKKQS 481
           +VDH+ A      +   A   S
Sbjct: 487 VVDHETASKECKKRMGEAYASS 508


>gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 462

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 200/477 (41%), Gaps = 28/477 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W + DLR+ DN+ L+AA       V+ V++       Q  +   +  F+ A +  +
Sbjct: 1   MHLYWHQRDLRVPDNRGLHAA--TDGDTVVPVYVFDDTVLSQ--VGRPKRAFLAAGVRAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +     D+   L +   +     +F+   Y+     R   +   L 
Sbjct: 57  RAAYRERGSDLLVRE----GDAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +  +      L            Y  ++ F     Q      + +    A+      
Sbjct: 113 AAGVDTAGHVDHTLVD---PATLDDAYPSHSQFYDDWQQAPKPDPVPAPDADALADVHDD 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT------ 242
              ++P           P+   G   A   L  F  + +  Y + RD  A          
Sbjct: 170 HTLSVPAPE-------PPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAPASAV 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+ G +  R+ W  + + + D           +  EL WRE   HL+   P   
Sbjct: 223 SRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHTPR-L 281

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + ++ +   I W       +AW +G TG+P++DA MRQL   G++HNR R + ASFL 
Sbjct: 282 QTENYVSFDAPIAWQNSDDHFEAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVVASFLT 341

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LLVDWR GE +F  +L+D D A+N   WQW ASTG D+V   RIF+P  Q  ++D   
Sbjct: 342 KHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTV-AVRIFDPVSQMAKYDSDA 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            F+  ++PEL  V  + I    +     +  L+ +Y  PIVD   A       + AA
Sbjct: 401 AFVTEYVPELRGVDPETIVDWPTLRHSQRERLAPDYHHPIVDRDHAYERAQRVFEAA 457


>gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
 gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
          Length = 559

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/513 (21%), Positives = 192/513 (37%), Gaps = 43/513 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +HLVWL+ DLR++D+   +AA      S+  V+A++   P+  RQ   + +   F   
Sbjct: 1   MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVR 118
           SL ++ + L ++ +     + +    +++ +   C Q  +        + +   +     
Sbjct: 61  SLQELAEQLPEQ-VPLLLAKANA-PVALQTMALCCQQISIYSHQETGNWASFVRDKEVKA 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             +                          L        V      + +      D     
Sbjct: 119 WCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDFPQNF 178

Query: 179 --------VPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVY 228
                   +P ++L   + P        YP    D       G Q A   L +F  E+  
Sbjct: 179 QQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLSERGM 238

Query: 229 YYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---------LIKPKSG 277
            Y  +   P  A    S+LSPYL+ GV+S R+    L +    L           + K  
Sbjct: 239 NYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQTQWKQS 298

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW----NKDSHLLQAWKQGYTGF 333
             S+ + L W   +   +   P +              +     +++    AW +G TGF
Sbjct: 299 LKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKALAWIEGRTGF 358

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR L   GW++ R+R +  +F    L +DWR        + LD +   +    Q
Sbjct: 359 PMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGIHYP--Q 416

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD----- 448
           +   +G   +   RI+NP  Q K  DPQG FIR W+PEL N+P  +I  P +        
Sbjct: 417 FQMQSGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTPQLIQQE 476

Query: 449 -KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
               +  +YP P+VD   A     +     +++
Sbjct: 477 CGCIVGEDYPWPVVDPDTAISKARSNITEFRQR 509


>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
 gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
 gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1
 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
 gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/514 (23%), Positives = 198/514 (38%), Gaps = 48/514 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA    D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + + L      +G      +     +          Q R+ K+      E     RD+  
Sbjct: 67  LDEQLQSATEGRG-RLFVFE----GEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESA 121

Query: 124 EKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKALIQNLV 170
               +   I      S               +PP +       +  +  P R A+  ++ 
Sbjct: 122 RLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHIN 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------NALHILR 220
            A    L     +  G       P  F+     +  +  I  +               + 
Sbjct: 182 DATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERLKVE 241

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
           +   E+ YY   Q +    +    +S +L  G LS R+ +  + + F ++ +        
Sbjct: 242 RNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
             G      +LIWRE++  +    P+    +             D +LLQ W+ G TGFP
Sbjct: 302 IEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENLLQRWRLGQTGFP 361

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W 
Sbjct: 362 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNWM 421

Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
           W +S+  + +     +  P    KR DP+G +IR ++PEL N+P +YIH P     +   
Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWRLSAEQQV 481

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                + ++YP  I+D  KA    +    A +  
Sbjct: 482 KFECLIGVHYPERIIDLSKAVKRNMMAMTALRNS 515


>gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
 gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
          Length = 582

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 145/491 (29%), Positives = 224/491 (45%), Gaps = 30/491 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W R DLRI+DN AL  A        +++++VF      W  H  S  +  F+Y +
Sbjct: 94  KTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRLTFLYNA 153

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIE-------WLDSYCLQQRVTKL---FYNRQYEI 114
           L  + K+L +  I     + +  + ++        W    CL+    K      N +Y  
Sbjct: 154 LKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTANAEYPT 213

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E+ RD  +      R     F D+ ++ P          Y V++P+ K    +L+    
Sbjct: 214 DELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAHLMDKKP 273

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV----YYY 230
               V   ++                    +         A          K        
Sbjct: 274 NDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYLEDGIDK 333

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKSGAFSWLNEL 285
             ++DI   + +S +S YLS+GV+S R   N        ++ V    K       ++ E+
Sbjct: 334 YPEKDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPMEEFIREV 393

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FY+H M+F+P + M  PF   +E ++W  +    + W  G TG P+IDA MR+L  
Sbjct: 394 AWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDAIMRKLLL 453

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +STG D+ PY
Sbjct: 454 EGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSSTGVDAQPY 513

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FR+FN   Q + FDP G FI+ W+PEL +      H  HS + K     +YP  IVD K 
Sbjct: 514 FRVFNMERQSQAFDPDGEFIKRWVPELKD-----AHNVHSLVQKA---KSYPEAIVDLKG 565

Query: 466 ACHHTLNQYYA 476
           +    L+ Y  
Sbjct: 566 SRQRALDTYSQ 576


>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
          Length = 535

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/503 (23%), Positives = 202/503 (40%), Gaps = 38/503 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYA 63
             + W R  +R+ DN A   +C   ++     K+  ++I  P   +     A +  F+  
Sbjct: 12  TTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQQ 71

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +  +L + G      +        E       +  V  L +    E     RD  +
Sbjct: 72  SLVDLDTTLRKLGTRLYVIRGL----PHEVFPDLFAKWNVKLLTFELDTEPYARERDNQV 127

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E+  +   +      S  +    ++  A       T  +   +   +    R +P P + 
Sbjct: 128 EQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSMPTPRRPIPAPDML 187

Query: 184 LTGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +  +   ++                    P +    ++P GE+ AL  L ++ K K + 
Sbjct: 188 PSECLLDDDLNNPEFDVPTLDELLTLKGFNPAELKPCLYPGGEKEALRRLEEYMKNKTWV 247

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              ++   +       T+ LSPY+  G LS    + RLKE              S + +L
Sbjct: 248 CKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFYYRLKEVI--GNSPHSKPPVSLIGQL 305

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREFY  + A  P+            ++ W+ +   L+AW  G TG+P IDA MRQL  
Sbjct: 306 YWREFYYTVGASTPNFDKM-VGNSICCQVPWDNNPDALEAWTNGKTGYPFIDAIMRQLRD 364

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W +++      
Sbjct: 365 EGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMWLSASAFFHQ- 423

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
           +FR+++P   GK+ D  G +IR ++PEL   P QYI+ P S            + ++YP 
Sbjct: 424 FFRVYSPVAFGKKTDKSGDYIRKYIPELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPK 483

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
            +V H+    + + +   A K +
Sbjct: 484 RVVVHEDVYKNNIAKMSLAYKST 506


>gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
 gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
          Length = 483

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 175/482 (36%), Gaps = 25/482 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++++VW + DLR++D++ L AA  ++    +  F   P          R   FI  S+ 
Sbjct: 1   MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L              + D++E L  +  Q  +  L+ +++  +            
Sbjct: 60  DINRKLKAYNTQIYV----TYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQV-- 113

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +   +    P G++        +    + + +   L   DL  +         
Sbjct: 114 --ASWCRQHHVNWFESPTGAVQRGLNSRQQWQKHWYETMKAPLATPDLARIQPVKA---- 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244
                +        F+        G   A   L  F +++   Y      P       S+
Sbjct: 168 --VSVDYRTLPKSWFERRPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIRAQHHCSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G LS R+C+    ++  +   K    AF            +            
Sbjct: 226 LSPYLAWGNLSLRECYQATVDKRRETGWKRPLNAFLSRLHWHCHFIQKFESETAMQHAPL 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                        +    L+AW+QG TG+P++DAAMR L   G+++ R+R +  SFL   
Sbjct: 286 NRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRMRALLVSFLCHY 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+    +  +  LD +   +    Q  A  G       R++NP  Q    DP G +
Sbjct: 346 LHIHWQYATTHLAALFLDFEPGIHYPQIQMQA--GIIGTNTIRMYNPEKQAIEKDPTGAY 403

Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I  W+PEL  +P +  HAP+        +    L  +YP PIVD         +  Y  K
Sbjct: 404 IDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVDVDDYRPIARDTLYRIK 463

Query: 479 KQ 480
           K 
Sbjct: 464 KS 465


>gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 545

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 174/486 (35%), Gaps = 24/486 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             T+M +++VW + DLR+ D+  L AA       V+ V++  P   +    + R   F+Y
Sbjct: 33  KDTSM-INVVWFKRDLRLEDHAPLKAAIE-VGLPVLLVYVFEPSLQQSPDWNIRHWQFVY 90

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  +   L    +           +  +  +      ++ K+F +++  I        
Sbjct: 91  QSIEDLNFELEDYQVKLHCFHA----EVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDR 146

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             ++   +   +  +           N                ++  +     +      
Sbjct: 147 QMQQFFEQKDIEWQEFEQNGIQRGRKNRRGWAQDWQI-----FMKEPLATPNLAQLKAMP 201

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ--NALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                     P+G +                Y    ++   + Q
Sbjct: 202 YEVTDFAFLFDYVTGQKIHLYSKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQPALSNQ 261

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL+ G LS RQ +   ++  +D     ++   ++L+ L               
Sbjct: 262 SNSHLSPYLAWGNLSVRQVYQHCQQLMID--SPHRANFETYLHHLRMHCQCIQKFE-MED 318

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +       ++E N  + LL+AWK G TGFP++DA+MR +   G+++ ++R +  SF
Sbjct: 319 YLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIRQTGYLNFQMRSLIVSF 378

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   L   W  G  Y   Q LD +   +    ++ A  G       +I NP    K+ DP
Sbjct: 379 LTHHLWQSWHTGVHYLGQQFLDYEPGVHF--VRFQAQAGAVDTHKVKILNPIKVSKKCDP 436

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +  FI+ W+PEL N+P   IH             K  +  +YP PI++      H     
Sbjct: 437 KAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPAPIININATHPHAKAAL 496

Query: 475 YAAKKQ 480
            A KK 
Sbjct: 497 EALKKN 502


>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
 gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
          Length = 433

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL+D
Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAKIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432


>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
          Length = 534

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 189/500 (37%), Gaps = 34/500 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           +++W R+ LR+ DN +L++A  ++ +    +FI   E      +   +  ++  +L  + 
Sbjct: 5   NVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALNDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +   + G      +                +  +  L + +  E     RD  +    + 
Sbjct: 65  QQFRKYGGKLLMIK----GRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             + C+      L  P +++     +  +        ++ +         V    +    
Sbjct: 121 IGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P +  R F    +A  P           I            ++Q               
Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCRG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                  +   +     LSP L  G LS R+ +  L++ F  +     +       +LIW
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE++  +    P+           +      ++  LQ WK+G TGFP +DAAMRQL T G
Sbjct: 301 REYFYTMSVNNPNYAQMSGNPICLDIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTEG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405
           W+H+ +R   ASFL +  L + W  G ++F+  LLD D +   G W W +S+  ++ +  
Sbjct: 361 WLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
                P   G+R +P G ++R ++PEL  +P +YI+ P              +  +YP P
Sbjct: 421 GECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPAP 480

Query: 460 IVDHKKACHHTLNQYYAAKK 479
           +VDH  A           ++
Sbjct: 481 VVDHTAAAARNRANMQELRR 500


>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
          Length = 552

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 203/492 (41%), Gaps = 39/492 (7%)

Query: 1   MKATTAMSV--HLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------- 50
           M ++++ +V   +VW R +DLRI D++ L  A   S   V+ V+   P Q          
Sbjct: 1   MSSSSSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCG 60

Query: 51  --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                  +++ FI   +  ++++L + G            +  E +         T++F 
Sbjct: 61  QFPKCGWQRTRFIVECVEDLRRNLQRLGSNLVVR----VGEPEEVIPDIVSITGATEVFG 116

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRK 163
            ++    E   +  L KRL   +  +           L    S  +      +       
Sbjct: 117 QKEVCSEETGVEHRLAKRLSVPLTLRWGAITLCHRDDLPYERSCSDLPGVFSQFRKAAEA 176

Query: 164 ALIQNLVQADLRSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
            +     +    SL      + G     P      P       +     F  GE  A   
Sbjct: 177 CVPIRPPRPPPPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERGVLTFVGGETVARTR 236

Query: 219 LRKFCKEKVYY--YVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           ++ +  +      Y + R+       +S+ SP+L+ G +S R   + +K    + +    
Sbjct: 237 VKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYERERVKNN- 295

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
              +  + EL+WR+++R +   + +    +  +   + I W      L AW++G TGFP 
Sbjct: 296 -STYWLVFELLWRDYFRFVALQHGTAIFKEGGV-QRKGIAWRHSPLDLSAWQEGRTGFPF 353

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   G+M NR R   ASFL KDLL+DWR+G E+F S L+D D  +N G W +A
Sbjct: 354 VDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDHDPCANYGNWNYA 413

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449
           A  GND     R FN   Q K +DP   ++  W+PEL ++P  + H P+           
Sbjct: 414 AGIGNDPRQ-GRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTPYQAPHGELEAAG 472

Query: 450 NDLSLNYPLPIV 461
             L  +YP PIV
Sbjct: 473 VALEKSYPRPIV 484


>gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 515

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/503 (20%), Positives = 185/503 (36%), Gaps = 34/503 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++WL+ DLR+TD+  L A     D  V  +++  P+Q  +  +      F    L+ +
Sbjct: 1   MDVIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDL 60

Query: 69  Q---KSLSQKGIVFQYHQCSNFD-------DSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
                +L +           +F        + I+ L +   Q+++ +L  + +       
Sbjct: 61  DTKLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSY 120

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                 +  +     K     +     S        +           Q      L    
Sbjct: 121 ARDKRVR--KWCRDRKIPFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTALECNI 178

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           V  + L G           + P +           GE  AL ILR F   +   + +   
Sbjct: 179 VIDLELPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGFSKGIS 238

Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P    TS   LSPYL+ G +S R     L+E    L  +       WL          H
Sbjct: 239 SPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAFSSRVH 298

Query: 294 LMAFYPSVCMGKPFIPWTE---------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
             + +      +P +   +         +   + +    QAW  G TG+P++DA MR L+
Sbjct: 299 WRSHFIQKLESEPEMEQRDVNAAFQPLRRQPGDWNECYYQAWSTGNTGYPMMDACMRCLH 358

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GW++ R+R +  SF   +L +DW     +     LD +   +    Q    +G   + 
Sbjct: 359 RHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYPQIQ--MQSGTTGIN 416

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
             R ++ T QGK  DP+G F+R ++PEL +VP  YIH P              +  +YP 
Sbjct: 417 ALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVHIGEHYPA 476

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
           PIV+ ++       +  A ++++
Sbjct: 477 PIVNEQETAKSAKERIAAVRRRN 499


>gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 456

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 149/476 (31%), Positives = 219/476 (46%), Gaps = 33/476 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++WLR DLR  D+          DA   AVF+  P   R    S  +  ++  +L ++
Sbjct: 1   MRVLWLRGDLRSYDHAGWSE-LGIGDA---AVFVLDPGLAR--HASPIRRAWLAGALGEI 54

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                 +  +             + L +       T++  ++       RR     + L+
Sbjct: 55  DDWTDHRLSLLHARHG-------DELAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  +  D +  + PGS+       ++V+  F +                P      P
Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQW------RPAVHGLGPFEATAPP 161

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                   F     +  D      ++ AL  L +F   ++ +Y   RD PA+  TS+LSP
Sbjct: 162 SLAVTERHFEPADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAVAATSELSP 221

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VCMGK 305
            L IG + PR     L +               ++ EL WREFY H +  +P        
Sbjct: 222 ALHIGAIHPRTILAALGDLDRA---------DRFVRELAWREFYAHALWHHPDLVDLELD 272

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P +      E ++     +AW  G TGFPI+DA MR+L   GW+HNR+RMI AS LVKDL
Sbjct: 273 PTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRMIVASLLVKDL 332

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR G  +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QGK+FDP G ++
Sbjct: 333 HLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQGKKFDPDGHYV 392

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W+PEL   PT  IH P  W+ + +    YPLPIVDH +     L +Y AA+  +
Sbjct: 393 RRWVPELRACPTSLIHEPWRWVGRENAG--YPLPIVDHDRERREALARYDAARASA 446


>gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
 gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
          Length = 433

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +          + N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    +  LL   +   +       Y   +   I+  VQ +  +    ++     +
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P                    GE+       K  +       +++D  A    + LSP+
Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P  
Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL+D
Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLID 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ W
Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 384 VDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432


>gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 478

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 224/483 (46%), Gaps = 27/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I           ++R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFDENYSHDFNANSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D I  +           +F+N+  E  E+ RD  ++K+L+ +
Sbjct: 65  NWHRMGSRLVIEK----GDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKEK 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180
            I        LL   S +                 +++ ++                   
Sbjct: 121 NIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVICQFKDIDN 180

Query: 181 -----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                 I  +     +   +   +    I P  P        +     ++K+Y Y   RD
Sbjct: 181 KLKENKIINSSDSVLNKFLKNIKFSGSNICPCRPGEVAAETLLKNFINEKKIYSYNSVRD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294
           +P+  GTS LS  L  G +S R+ WN       D      S    +W  EL+WREFY+H 
Sbjct: 241 LPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G PF    ++  W  ++   Q W +G TG PI+DAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FDP   +I+ W+PEL+ V    I    +    N  + NY  PIV+H        + Y
Sbjct: 419 AKKFDPICEYIKSWIPELSKVSNSDI---LNGEISNLENNNYSKPIVNHNIQQRLFKSLY 475

Query: 475 YAA 477
              
Sbjct: 476 AEI 478


>gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 501

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 174/482 (36%), Gaps = 22/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA  N     + +F   P          R   F++ SL  +
Sbjct: 6   INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L  +         +   + I  L+      ++ +++ + +  I              
Sbjct: 65  QNRLKIREKQLY----AVHQEVITVLEWITDFYQIQQVYSHEEVGIKITFDRDK----AV 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +   +        P   I+              K+  +                    +
Sbjct: 117 KKWCTEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LS 246
                           +     GE  A    + F +E+   Y  Q   PA   TS   LS
Sbjct: 177 EKFTTAPLPSVIQSYQEGFQRGGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTSCSRLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +S R+    L         +     F   + L WR  +   +          P
Sbjct: 237 PYLAFGCISAREVMQHLDAHLSQSADRWNLNNFR--SRLWWRSHFIQKLE-TDWRVEIAP 293

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P   +++   D    +AW QG TGFP++DA+MR L   GW++ R+R +  SF    L 
Sbjct: 294 INPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFATFVLW 353

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR    +     LD +   +    Q  A  G       R++NP+ Q  + DP G FI+
Sbjct: 354 LDWRPVATHLARLFLDFEPGIHYPQIQMQA--GLTGYHTLRMYNPSTQVTKNDPDGIFIK 411

Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  VP+  +  P              +  +YP+P+VD  K      ++Y+  ++ 
Sbjct: 412 KWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYWQIRQS 471

Query: 481 SL 482
             
Sbjct: 472 PA 473


>gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora]
          Length = 554

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 145/446 (32%), Positives = 219/446 (49%), Gaps = 21/446 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  
Sbjct: 112 VHWFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEI 171

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L   GI                +D    + R+ K+F     ++             
Sbjct: 172 LKRDLEALGIPLWIETYE--------VDELRREARLVKIFAEGDEKMVAEVVHDTCVVMP 223

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +V  P        ++         +  + N      +   +    +   
Sbjct: 224 GALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLPNPPSTKSKYAHLFTCPIPPA 283

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246
               N+P   +   +    ++P GE  AL  L KFC E +  Y E+RDIP+++G TS+LS
Sbjct: 284 PENKNLPDNDETKARY-RALWPAGEHEALKRLHKFCDENIGKYAERRDIPSVEGGTSKLS 342

Query: 247 PYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            + + G LS R      ++      L     G   W++E+ WREFYRH++  +P VCM K
Sbjct: 343 VHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVAWREFYRHVLVGWPYVCMNK 402

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF P    I W+ +     AW  G TG+PIIDAAMRQ+ + G+M NRLRMI ASFL KDL
Sbjct: 403 PFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLSTGFMPNRLRMIVASFLAKDL 462

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR+FNP +Q ++FD  G +I
Sbjct: 463 LIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDEGGEYI 522

Query: 426 RHWLPELNNVP-------TQYIHAPH 444
           R W+ EL ++          +IH P+
Sbjct: 523 RRWVEELRDLEGGKLGGKGGWIHDPY 548


>gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950]
          Length = 442

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 211/473 (44%), Gaps = 33/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R DLR+ D+            +V+A F+  P          R+  F+  SL 
Sbjct: 1   MP-ALLWFRRDLRLRDHP--ALLAAAEAHEVLACFVLDPRLESSS--GQRRLQFLGDSLR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++  L  + +V               +     +   T +  +  +     RRD+ +   
Sbjct: 56  RLRADLDGRLLV-------TRGRPDTQIPHIAKEIGATSVHISEDFAPFGTRRDERVRAA 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +  +    ++ P G +       Y+V+TPF +   +   +A   S    A  L  
Sbjct: 109 LGAVPLVATGSPYLVSP-GRVTKPDGSPYQVFTPFLRQWHKVGWRAPATSGAASAHWLDP 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                        P   +      GE  A    + F    +  Y + R+ P ++GTS++S
Sbjct: 168 ARLRVGHCEI---PDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     L             GA ++L EL +R+FY  ++  +P+      
Sbjct: 225 AHLKFGTVHPRTLAADL--------DLRGGGAQAYLRELAFRDFYADVLHHWPASAWRNW 276

Query: 307 FIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +      +  +      AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKD
Sbjct: 277 NKDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVRMSVASFLVKD 336

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G E+F+ QL+DGD+A+N  GWQW A  G D+ PYFR+F+PT QG++FDP G +
Sbjct: 337 LHLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQGEKFDPTGDY 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PEL       +H     L +     NYP PIVDH       L +Y + 
Sbjct: 397 IRRWVPELR--SADDVH-----LRRGRRPDNYPQPIVDHAAERAEALRRYQSI 442


>gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
 gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
          Length = 559

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/510 (25%), Positives = 224/510 (43%), Gaps = 38/510 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+ + A   +LVW R DLR+ D      A  N+   V+ +FI  P +  +         +
Sbjct: 1   MENSKA--CNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--R 118
           +  SL+ +  SL+  G      + +   D++  L +       T++F N  Y       R
Sbjct: 58  LKQSLIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVAR 114

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++ ++ L++ +   +F+   L  P  I +     +  +  F    ++   + D+    
Sbjct: 115 DRRVKQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSS 174

Query: 179 V-----------------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                                                   + +   +  G ++A   L+ 
Sbjct: 175 QARLFPYREYLDLISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQA 234

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAF 279
           F    +  Y   R   A   TS LSPYL  G LS R+ +N +  K+   + L  P+  A 
Sbjct: 235 FLVGPLNDYTTSR-ETADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAH 293

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            +L  +  RE+ R++   +P            +   W  D    +AWK G TG+P++DAA
Sbjct: 294 LFLRAIGLREYSRYISFHFP----FTQEQSLLKNFPWRNDEIHFKAWKLGKTGYPLVDAA 349

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +   
Sbjct: 350 MRELWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCL 409

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLS 453
            D     R+ +P  +G + DP+G ++R WLPEL+ +P Q+IH P+S           +L 
Sbjct: 410 TDGHELDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELG 469

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
            NYP PIVD + A +       + ++++ +
Sbjct: 470 TNYPKPIVDMEVAKYRLSQAVKSMREKNSV 499


>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
 gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
          Length = 498

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/499 (22%), Positives = 184/499 (36%), Gaps = 39/499 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   + W R  LR+ DN+ L  A   SD     +F       +   +S     F+  SL 
Sbjct: 1   MVNSVHWFRKGLRLHDNEPLRRAIEGSDT-FRGIFFLDKAAVKNAKVSPNGWRFLIESLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL +        Q       I+       Q  ++KL +    E    +RD  +++ 
Sbjct: 60  DLDQSLQKYNSRLFIIQ----GQPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRI 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   +      S  L     +   L+M +   P      + +V+               
Sbjct: 116 AEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRK 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------ 234
                  P    +  +   P           +               R            
Sbjct: 176 SFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRLGILEDKILGSN 235

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                          +QLSPYL  G LSP+  + +L   +V +         S   +LIW
Sbjct: 236 SSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQ--FSPPPMSLYRQLIW 293

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+  L +  P++       P   +I W ++      WKQG TGFP IDA MRQL   G
Sbjct: 294 REFFFTLASKNPNMDQVND-NPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKEG 352

Query: 348 WMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--VP 404
           W+H+  R+    FL +    + W  G   F    LD + + N+G W W + +      +P
Sbjct: 353 WIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWLSCSAFFHGQIP 412

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           +   F P   GK+ DP G++IR ++PEL ++P +Y++ P +  D         +  +YP 
Sbjct: 413 W---FCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPH 469

Query: 459 PIVDHKKACHHTLNQYYAA 477
           PIVDH +     L +    
Sbjct: 470 PIVDHIEQRKACLQRLKTV 488


>gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 512

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 204/483 (42%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++W R DLR+ DN  +  A    D +++  FI  P  ++Q  I   +  F++ SL  +
Sbjct: 1   MQILWFRRDLRLIDNDIVAQAAAT-DEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      +     +S+E + +   +  +   ++ R     +++ D   ++  Q
Sbjct: 60  DGSLRDLGSRLYLFE----GNSVEVIQTLTGEL-LELGYHPRLVFNRDIQVDYGRKRDHQ 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +    +  L   + L    +  + +     A ++         L  P I L    
Sbjct: 115 VIEFYQRLGLNCYLGLNNFLQIEGENREQWMNEYYADLRQPQHPIPTKLKTPEIPLNLTQ 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQL 245
              +  +           +F  GE  A   L  + K +   Y  +   P I     TS L
Sbjct: 175 LTFDELQQKYNFNSQNSALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQIATLGGTSHL 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           S +L+ G +S RQ + + K    +L      +    S+ N L WR+     + ++P +  
Sbjct: 235 SAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQRLYYFPELAY 294

Query: 304 GKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +  + +     +         QAW+QG TGFP++DA+M+QL ++GWM+ R+R + A+
Sbjct: 295 QNCYPEFDKWYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSMGWMNFRMRAMCAN 354

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--VPYFRIFNPTIQGKR 417
           FL     V W  G  ++M+ L+DGD+A N+  WQW A  G  +     FRI+NPT     
Sbjct: 355 FLTVICGVSWHHGARHYMNYLVDGDIAINH--WQWQAQAGVTNPLSSTFRIYNPTKNLTE 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP+  F+R W+PEL +   + I        +      YP P++D  +            
Sbjct: 413 KDPKFEFVRDWIPELRDCTDEQI-----LSGEIGELSGYPEPMLDWYEMRKINGKVVSEL 467

Query: 478 KKQ 480
           +KQ
Sbjct: 468 RKQ 470


>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 119/486 (24%), Positives = 200/486 (41%), Gaps = 48/486 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+ 
Sbjct: 89  VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 147

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L  +G+              E L S         ++ +++    E+  ++L
Sbjct: 148 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 203

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   L+  V+  S   S  L   +     L                    D+ +    ++
Sbjct: 204 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 263

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219
                +           P   I+    +   +                            
Sbjct: 264 ESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNE 323

Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             + K+ +  Y   R+ +     +++ SP+L+ G LSPR  +  +K    +         
Sbjct: 324 YFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--ST 381

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           +  L ELIWR+++R L   Y +        P   +  W++D  + +AW+ G TG+P+IDA
Sbjct: 382 YWVLFELIWRDYFRFLSVKYRNSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDA 440

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  
Sbjct: 441 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 500

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           GND     R F+   Q K +DP+G ++  WLPEL  +P    + P           +Y  
Sbjct: 501 GNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYIN 550

Query: 459 PIVDHK 464
            IV  K
Sbjct: 551 QIVPLK 556


>gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51]
 gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51]
          Length = 504

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFSRLAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
 gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
          Length = 500

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 175/483 (36%), Gaps = 23/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++ VW + DLR+ D+  L AAC ++   V+ +++  P Q +   +S R   FI  S+  +
Sbjct: 8   INAVWFKRDLRLADHAPLQAAC-HAGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G   +        + IE L     +  +  LF + +                 
Sbjct: 67  NLQLNRAGC--EAGVALVHGECIESLTRLQQRYSLHTLFSHEETGDASTFERDQQVAHWC 124

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +      + +       + N                    ++      P        P 
Sbjct: 125 QQQDVNWQEFTTNAVIRGVFNRDGWDRHWQQVMGAPQQNADLRQLRVIRPTALPDWQPPS 184

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                   F    +                     + + Y       I +    S+LSPY
Sbjct: 185 EWQQANSQFQTGGELAAN--------QWMESFFNARGRFYSGSVSSPIASRTFCSRLSPY 236

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S RQ + + +               ++ + L W   +        ++       
Sbjct: 237 LAFGNISLRQAYQQYRANRQKAG--WDRSLRAFASRLHWHCHFIQKFESECAMEQRPVNR 294

Query: 309 PW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            +        +  +  L AW+ G TG+P++DA MR L   G+++ R+R +  SFL   L 
Sbjct: 295 GYLTYPYRTDDGVNADLAAWQDGRTGYPLVDACMRCLQATGYINFRMRAMLVSFLCHLLN 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW+ G  +     LD +   +   +Q  A  G   +   RI+NP +Q +  DPQGTFIR
Sbjct: 355 IDWQRGVHHLARLFLDYEPGIHYSQFQMQA--GLTGINTIRIYNPVLQSQEQDPQGTFIR 412

Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  +P   +H P              +S +YP P+ +   A     ++ +  + +
Sbjct: 413 QWVPELAELPDTLLHQPWLLTPMEEQMFDLQISQHYPAPLFELAPAYAAARDRLWDWRSR 472

Query: 481 SLL 483
             +
Sbjct: 473 PDV 475


>gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 119/486 (24%), Positives = 200/486 (41%), Gaps = 48/486 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+ 
Sbjct: 52  VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 110

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L  +G+              E L S         ++ +++    E+  ++L
Sbjct: 111 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 166

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   L+  V+  S   S  L   +     L                    D+ +    ++
Sbjct: 167 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 226

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219
                +           P   I+    +   +                            
Sbjct: 227 ESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNE 286

Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             + K+ +  Y   R+ +     +++ SP+L+ G LSPR  +  +K    +         
Sbjct: 287 YFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--ST 344

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           +  L ELIWR+++R L   Y +        P   +  W++D  + +AW+ G TG+P+IDA
Sbjct: 345 YWVLFELIWRDYFRFLSVKYRNSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDA 403

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  
Sbjct: 404 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 463

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           GND     R F+   Q K +DP+G ++  WLPEL  +P    + P           +Y  
Sbjct: 464 GNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYIN 513

Query: 459 PIVDHK 464
            IV  K
Sbjct: 514 QIVPLK 519


>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 40/507 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A +N++ K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEAHNNAE-KLITLFIFDETTFNPKWYGYNPMRFLLESLI 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+  G      Q     + +        +  +  + Y +        RD+ ++  
Sbjct: 60  DLNNNLALVGGRLYILQ----GNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                I C       L  P SI+     +        +   + +         V  + + 
Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------------------- 225
               P++I   F          F I  +   ++   +                       
Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235

Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
               +Y   Q +   +   S LS  L  G LS R+ +  L + F++         +S  +
Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           +LIWR+++  +     +    +            I+  ++  +L+ WK G TG+P IDA 
Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDAG 355

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           MRQL   GW+H+ +R   ASFL + DL + W  G  +FM  LLD D +  +G W W +S+
Sbjct: 356 MRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSSS 415

Query: 399 GNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451
             + +        P   G R DP G +I+ ++PEL N+P Q+++ P    +         
Sbjct: 416 TFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGCI 475

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  +YP  IVDH  A      +  A +
Sbjct: 476 IGKDYPNCIVDHTIASKGNRKKMLALR 502


>gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
 gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
          Length = 504

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
 gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
          Length = 504

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 473

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 149/476 (31%), Positives = 224/476 (47%), Gaps = 25/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++D+ AL AAC ++   VIAVFI         G+ A     +  +L    +
Sbjct: 8   IVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDDIV---DGLGAAPKWRLGKALEVFTQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQH 129
           +L++  I     +      + + LD+   +     ++++R Y+   V RD +++   L  
Sbjct: 64  TLARLNIPLILREGP----AGDVLDALITETDAQGVYWSRLYDPACVTRDTVIKADLLSK 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLT 185
            +  +SF   ++  P ++      MYKVYTPF +++    V           P      +
Sbjct: 120 GLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPLAVPTSVQPYEGHLES 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +   +          +     +GE  A   L  F +  V  YVE+RDIP+ +GTS L
Sbjct: 180 ADQSDWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPSTRGTSGL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++G +SP QCW+       +        +  +L EL+WREF  HL    P +    
Sbjct: 240 SENLALGEISPHQCWHAGMRALHEGKD----DSEVFLKELVWREFAYHLTHHTPHILDSN 295

Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W +        H    AWKQG TG   +DAAMR++   G MHNR RMI AS+L K 
Sbjct: 296 WKSDWDKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIVASYLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD +  +
Sbjct: 356 LLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDKFDRERGY 415

Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            R W+ E    P       +   P SW  ++  +  YP PIV+  K     L+ Y 
Sbjct: 416 ARAWIAEGQGNPPDTATSYFEAIPKSWGLRS--TDIYPKPIVEAAKGRQRALDAYQ 469


>gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 1]
          Length = 443

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 221/475 (46%), Gaps = 39/475 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYA 63
           M+  L   R D R+ DN  L  A  N    VI +FI TPEQ    +    S     F+  
Sbjct: 1   MNT-LFIFRRDFRVQDNVGLNYAMTNFK-NVIPIFIFTPEQIDKNKNKYFSDHSVQFLCE 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L ++++      I         + D +  + S      +T + +N+ Y     +RDK +
Sbjct: 59  CLEELKEK-----IGLHIF----YGDYMNVIRSIHKDHHLTHIVFNQDYSPYSRKRDKTI 109

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           E+  Q   I C   +D +L P G+        Y VYTPF+  + QN      +   V  I
Sbjct: 110 EQWCQSEQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQNHSVPMPKKRGVKHI 169

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +     +        DY       +   G ++ L  L+K         +          T
Sbjct: 170 KHIDFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKKSHATYERNKLNT-------ET 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LS Y+  G LS R+ ++  K+                 ++L+WREF+ ++  ++P + 
Sbjct: 223 THLSSYIKYGCLSIREVYHSFKD-------------DDLKSQLVWREFFYYINYYFPELI 269

Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K +    + I+W ++   L AWK G TGFP++DA MRQLN  G+MHNR R+I+A+FL
Sbjct: 270 DKSKSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFL 329

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420
            + L ++WR GE YF   L+D D   NN  WQW +S G D+ PY  R+FNP +Q KRFD 
Sbjct: 330 NRILGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDA 389

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           Q  +I+ W+PEL +V  + IH       K   +++YP P+VD+      +L  Y 
Sbjct: 390 QCDYIKKWIPELKDVAPKDIHQ-WDISCK-QYNVDYPCPMVDYALCRERSLKMYK 442


>gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
 gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
          Length = 504

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
 gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
          Length = 504

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +      +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSQAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae]
          Length = 446

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 143/480 (29%), Positives = 206/480 (42%), Gaps = 50/480 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VW R+DLR+ DN AL  A      + A + AV+IA         +      +++ SLL 
Sbjct: 6   VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANE--VGVRPLGGAVKWWLHHSLLA 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q+G+           D +  L         T +  NR+Y+      D       
Sbjct: 64  LSEQLAQRGVRLHVLS----GDPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181
               +        L   PG I       YKV+TPF + L   +    L +L  P      
Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           I  T          +  +   +I   +  GE  A   L +       Y  + RD P I G
Sbjct: 180 IDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAELDDILPRYL-DDRDRPDIDG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP L  G LS  + WN                +  +  +L+WR+F  H +  +P +
Sbjct: 239 TSRLSPRLRFGELSVAEVWNHA------------HTSEGFRRQLMWRDFAWHRLDAHPDM 286

Query: 302 CMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                   +        D      AW+ G TG  ++DA MR+L   G MHNR+RM+ AS 
Sbjct: 287 ATANIRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAASL 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK+L + WR GE++F   L+D D ASN   WQW A +G+D+ PYFRIFNP  Q +RFDP
Sbjct: 347 LVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRFDP 406

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAKK 479
            GT+   WLP                     +S +YP   IVD K++    L+ Y A K+
Sbjct: 407 DGTYRTRWLP--------------------IMSADYPEEAIVDLKESRLRALDAYNACKR 446


>gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
 gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2
 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
          Length = 504

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
 gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
          Length = 541

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 186/498 (37%), Gaps = 33/498 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  + WLR  LRI DN AL  A  N       V+I   +      I      F+  +L  
Sbjct: 21  SHSIHWLRKGLRIHDNPALRDAVLN-WGTFRVVYILDTKSVASSNIGLNLWRFLLQALED 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +        +       +  +T+L +    E     RD  +    
Sbjct: 80  LDDSLRKLNSRLFVIR----GQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +  +   S        I++       +      ++I+ +   D     +       
Sbjct: 136 REAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQEL 195

Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQR- 234
             TP +      Y    ++            ++  GE  AL  L +  + K +     + 
Sbjct: 196 GHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKP 255

Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                  +   S +SPYL  G LSPR  + RL + +  +   P     S   +L+WREF+
Sbjct: 256 KVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKGGP--PPTSLYGQLLWREFF 313

Query: 292 RHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
             +    P+       P   + +     + +  LQ W    TGFP IDA M QL   GW+
Sbjct: 314 FVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWI 373

Query: 350 HNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H   R+  ASFL +    + W  G + F   LLD D +SN G W W + +   S  +F  
Sbjct: 374 HYLARVAIASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYS-AFSQQFFNP 432

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
             P    K  D  G +IR +LP L   P +YIH P           K  +  +YP P+VD
Sbjct: 433 PCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVD 492

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H+KA    + +  +  K 
Sbjct: 493 HEKAVSKNMEEMTSVYKS 510


>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
 gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 117/509 (22%), Positives = 180/509 (35%), Gaps = 40/509 (7%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------IS 54
           M+     L+W R  LR+ DN AL  A   S+     VF+  P                  
Sbjct: 1   MATRSGSLIWFRKGLRVHDNPALEFASKGSEFMF-PVFVIDPHYMESDPSAFSPGSSRAG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYN 109
             +  F+  SL  +  SL + G      +    +     L        C +      +  
Sbjct: 60  VNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDPYYKA 119

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
              ++ +      +E          +  D +    G          K+      A  + +
Sbjct: 120 LDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLKIAGEPSCAKSELV 179

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFC 223
           +             L     PS     +    +  D     G      ++    I  K  
Sbjct: 180 MSYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEALKRLTKSISDKAW 239

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
                             T+ +SPYL  G LS R  +  L+  + D+         S L 
Sbjct: 240 VANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLLG 298

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA M QL
Sbjct: 299 QLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQL 357

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +    
Sbjct: 358 LKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY 417

Query: 403 VP---YFRIFNPTIQG----KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449
                 F +     Q      ++DP G +IRH+LP L ++P QYI+ P +          
Sbjct: 418 QAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKAN 477

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             +  +YP P+V H  A      +   A 
Sbjct: 478 CIVGKDYPKPMVLHDSASKECKRKMGEAY 506


>gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 755

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/514 (24%), Positives = 190/514 (36%), Gaps = 56/514 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           L+W R DLR+ DN AL AA     A VI +FI +PE+                ++++ +L
Sbjct: 106 LLWFRRDLRLCDNPALTAALE-VGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164

Query: 66  LQVQKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL + G    + +          S++ L     +     +  N  YE     RD 
Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK---VYTPFRKALIQNLVQADLRSLP 178
                L    +      S  L     +       +     + F     QN   A    L 
Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284

Query: 179 VPAIRLTGPVTPSNIP--------------RFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
            P         P   P                      +I   +   E+ A   L  F  
Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDWAASIRKSWDFSEEGAHARLEAFLG 344

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           + VY Y ++        TS +SPYL  G LSPR      K                +  +
Sbjct: 345 DGVYRYDKESGRADAPNTSCVSPYLHFGQLSPRWVLWDAKAAR--------CRPPKFQRK 396

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+   +           +   P  + + W+ D   L+AW++G TG+P++DAAMRQL 
Sbjct: 397 LAWRDLA-YWQLSLFPELPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDAAMRQLW 455

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM-----------SQLLDGDLASNNGGWQ 393
             GWM+N +R + ASFL+  L + W+ G  +F              L+D D+A +   WQ
Sbjct: 456 LTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAIDAMMWQ 515

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---- 449
                G D   +  + +P       DP G+++R W PEL+ +P + IH P          
Sbjct: 516 NGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCPASVLRR 573

Query: 450 --NDLSLNYPLPIV-DHKKACHHTLNQYYAAKKQ 480
               L   YP  IV D ++    +L      +KQ
Sbjct: 574 AGVVLGQTYPERIVTDLEERRSRSLRDVALVRKQ 607


>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
 gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
 gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
          Length = 551

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 127/498 (25%), Positives = 201/498 (40%), Gaps = 31/498 (6%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        I      S     P   I  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR- 234
           P +  TG      +PR  +  +  I       F  GE  AL  +R+   +K +    ++ 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                      T+ LSPYL  G LS R  ++ +++ +            S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W + +      Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQS 481
             A          A   +
Sbjct: 494 AIASKECKKMMGEAYASN 511


>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
 gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
          Length = 425

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 200/455 (43%), Gaps = 33/455 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLR+ D+ A  AA      +V+ +F+  P           ++ F+  SL 
Sbjct: 1   MDTVIVLFNRDLRVHDHPA-LAAACADAWRVVPLFVIDPGV-----PGGHRAGFLAESLD 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL ++G      Q     D +        +     ++ +        RR++ L + 
Sbjct: 55  DLRGSLRERGGDLVVRQ----GDPVAETLRLARELPAQAVYVSADVSALAQRRERRLAEE 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   +       V + P   L  +              + +  +          +R+  
Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVRIPE 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +    +P     P          GE  A   +R++ K  V  Y +  D  A   TS+LS
Sbjct: 171 GLEAGPLPVAGHEPHGLFR----GGETVARERMRQWLKYCVEDYADGHDDLAGNRTSKLS 226

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LSP +                      ++ +L WR+F+  +   +P +     
Sbjct: 227 PYLRFGCLSPLEL------------ESLSENGDDFVRQLCWRDFFHQVTRAFPRINRDDY 274

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                +  EW  D    QAWK+G TG PI+DA MRQL   GWMHNR RM+T+SFLV+ L 
Sbjct: 275 ---RPQGQEWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVRRLR 331

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR+G E+F   LLDGD+++N G WQW A TGND+ P  RI NP  Q +RFDP+G +IR
Sbjct: 332 VDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRP-NRIVNPVRQARRFDPEGEYIR 390

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            +LPEL+ VP + I+ P            YP P+V
Sbjct: 391 RYLPELDAVPVKMIYEPWRMSTGI---RGYPAPLV 422


>gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
 gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
          Length = 436

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 192/453 (42%), Gaps = 25/453 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +     DLR+ DN  L AA  ++   V+ +F+              ++ F+ A++ ++
Sbjct: 2   TAIALFTRDLRVHDNPVL-AAARDAGDAVVPLFVIDAHLV-PDRCPPNRARFLAAAVREL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L  +G      +    D+    +D    +     +            R   L +RL 
Sbjct: 60  DAELRTRGGRLIVRRGVVADEVARVVD----ETGARTVHLADDVSGYSAARADALRERLD 115

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R +  +    S+    G +L  A                + V       P   + +   
Sbjct: 116 RRGVRLEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDL 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            + +          +    +   GE     +L  +    V  YVE  D  A   TS LSP
Sbjct: 176 PSAALPTPESLNRGEPSPQLSVGGETTGRALLDSWLAGPVDDYVETGDDLAADATSHLSP 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G LSP +  +R+            +G  ++  +L WR+F+  L+A  P+V      
Sbjct: 236 YLHFGCLSPTELLHRV--------DVGSAGGQAFARQLAWRDFHHQLLAARPAVARHDY- 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I W  D   L AW+   TG+PI+DAA+RQL+T GW+ NR R+I A+FL K L +
Sbjct: 287 --RPRPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLTKTLGL 344

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR G  +F+  L+D DLA+N   WQW A TG+D+ P  R FNP  Q  R+DP G ++R 
Sbjct: 345 HWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRP-NRGFNPLRQADRYDPDGVYVRR 403

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           W+PEL ++    IH P          ++YP PI
Sbjct: 404 WIPELADLDGGRIHRPWRA------EVDYPSPI 430


>gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
 gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFSRLAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAVL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
 gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
          Length = 504

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGH 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
 gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
          Length = 504

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFSRIAERHAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +      +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSQATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGL 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPFEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica]
          Length = 539

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/488 (25%), Positives = 204/488 (41%), Gaps = 31/488 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYAS 64
            + L   R DLR+ DN +L  A  +   +++ VF+  PEQ    +    S     F+  S
Sbjct: 55  KIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMCES 113

Query: 65  LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  + + L +            N    +E +         + + YN  Y +    RD  +
Sbjct: 114 LNDLGRQLKEEVDGKLHLFMGGN----LETIKKIKEVVNFSAIAYNEDYSVYARERDGEI 169

Query: 124 EKRLQHRVICKSFDDSV----LLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSL 177
           E+  +   +    ++      +                        IQ    ++    + 
Sbjct: 170 EEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRVLSIFFKHIQKFYDIRKPESNF 229

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              A + T                   +          + ++     +    Y E R+  
Sbjct: 230 EFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKIKNKKDYNETRNFM 289

Query: 238 A-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
               GT+++S +L  G +S R+ + R  E F +            + +L++R+FY  + +
Sbjct: 290 HLKAGTTKMSAHLKFGTVSIREMYWRTAELFGETHD--------LIRQLVFRDFYLKIYS 341

Query: 297 FYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             P +  G       + +I W+ D  L  AW +G TGFP++DAA RQL  IGW HNR+RM
Sbjct: 342 HNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRM 401

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQ 414
           +T   L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYFR  FNP IQ
Sbjct: 402 LTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQ 461

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACHH 469
            K+FD +G +I+ ++PEL +V    +H       +     N     YP P+V H +A  +
Sbjct: 462 SKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKN 521

Query: 470 TLNQYYAA 477
            +  Y  A
Sbjct: 522 AVYLYKKA 529


>gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
 gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
          Length = 504

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +        P  +++  A         +++ +       DL S     +     
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAATL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQIPLESPYLNPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
 gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
          Length = 485

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +       LP  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
 gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
          Length = 506

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/489 (20%), Positives = 181/489 (37%), Gaps = 27/489 (5%)

Query: 6   AM-SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +M  ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ S
Sbjct: 2   SMEKINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L+Q              D          +  +  ++ +++  +    +     
Sbjct: 61  LQAINRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD--- 113

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                +   +        P  +++  A         +++ +       DL       +  
Sbjct: 114 -LALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDA 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGT 242
                 S+IP            M   G   A   L  F   +   Y      P+      
Sbjct: 173 ATLGLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHAC 229

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++SPYL+ G +S R+ +  L + +       +    +  + L W   +         + 
Sbjct: 230 SRMSPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEME 287

Query: 303 MGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S 
Sbjct: 288 FRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D 
Sbjct: 348 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDS 405

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ 
Sbjct: 406 EGHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRL 465

Query: 475 YAAKKQSLL 483
           +  +K   +
Sbjct: 466 WQWQKLPAV 474


>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
          Length = 608

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 185/517 (35%), Gaps = 47/517 (9%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAA----CHNSDAKV--IAVFIATPEQWRQHGISARQSH 59
           M+++ ++W R+ LR+ DN +L  A    C +S+  V    VFI   E      +   +  
Sbjct: 62  MTINNILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMK 121

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + +   + G      +     DS   L     +  + KL + +  E     R
Sbjct: 122 FLLESLADLDRQFRELGGQLLVFR----GDSETVLRRLFEELNIKKLCFEQDCEPIWRER 177

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+ + K  +   +    + S  L   + +          T        +++    R +  
Sbjct: 178 DERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPPRPVGA 237

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ------ 233
           P            I       +Q      P               +K      +      
Sbjct: 238 PDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIGGETRALESLG 297

Query: 234 ----------RDIPAIQGT---------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
                     R+   +            + +S  L  G LS R  +  + + F  +    
Sbjct: 298 ARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQASS 357

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           +           +LIWRE++  +    P                +      L  WK+G T
Sbjct: 358 QFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLNIPWYEPVDDSLVRWKEGRT 417

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   G
Sbjct: 418 GFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHFLKYLLDADWSVCAG 477

Query: 391 GWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
            W W +S+  + +    +   P     R DP G +++ ++PEL N P   +H P     +
Sbjct: 478 NWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNYPAHLVHEPWKATKE 537

Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +   YP P+VD         +     +++
Sbjct: 538 EQLEYGCTIGQQYPAPMVDLNVVAKRNAHAMSKLREE 574


>gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
 gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
          Length = 559

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/510 (24%), Positives = 223/510 (43%), Gaps = 38/510 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+ + A   +LVW R DLR+ D      A  N+   V+ +FI  P +  +         +
Sbjct: 1   MENSKA--CNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--R 118
           +  SL+ +  SL+  G      + +   D++  L +       T++F N  Y       R
Sbjct: 58  LKQSLIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVAR 114

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++ ++ L++ +   +F+   L  P  I +     +  +  F    ++   + D+    
Sbjct: 115 DRRVKQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSS 174

Query: 179 V-----------------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                                                   + +   +  G ++A   L+ 
Sbjct: 175 QARIFPYREYLDVISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQA 234

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAF 279
           F    +  Y   R       TS LSPYL  G LS R+ +N +  K+   + L  P+  A 
Sbjct: 235 FLVAPLNDYTTSR-ETTDNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAH 293

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            +L  +  RE+ R++   +P            +   W+ D    +AWK G TG+P++DAA
Sbjct: 294 LFLRAIGLREYSRYISFHFP----FTQEQSLLKNFPWSNDEIHFKAWKLGKTGYPLVDAA 349

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +   
Sbjct: 350 MRELWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCL 409

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLS 453
            D     R+ +P  +G + D +G ++R WLPEL+ +P Q+IH P+S           +L 
Sbjct: 410 TDGHELDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELG 469

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
            NYP PIVD + A +       + ++++ +
Sbjct: 470 TNYPKPIVDMEVAKYRLSQAVKSMREKNAV 499


>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
 gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
 gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
          Length = 545

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/516 (22%), Positives = 196/516 (37%), Gaps = 46/516 (8%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQS 58
           M+++ ++W R+ LR+ DN +L  A  +          K+  +FI   E      +   + 
Sbjct: 1   MTINNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRM 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  + +     G      +     DS+  L     +  + KL Y +  E     
Sbjct: 61  KFLLESLADLDRQFRDLGGQLLVFR----GDSVTVLRRLFEELNIKKLCYEQDCEPIWKE 116

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175
           RD  + K  +   + C       L  P  ++     +  +        +  +        
Sbjct: 117 RDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVG 176

Query: 176 --------SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRK 221
                      VPA+  +       +P   D+              +  GE  AL  L  
Sbjct: 177 APNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGA 236

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYL------SIGVLSPRQCWNRLKEEFVDLLI--- 272
             K++   + E   +P       L P          G LS R  +  + + F  +     
Sbjct: 237 RLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQ 296

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
               G      +LIWRE++  +    P     +          +  +   L  WK+G TG
Sbjct: 297 FKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYKPEDDSLTRWKEGRTG 356

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   G 
Sbjct: 357 FPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGN 416

Query: 392 WQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
           W W +S+  + +    +   P    +R DP+G +++ +LPEL N P Q++H P     + 
Sbjct: 417 WMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASREQ 476

Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                  +   YP P+VD         +   + +++
Sbjct: 477 QIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREK 512


>gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 526

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/498 (19%), Positives = 168/498 (33%), Gaps = 29/498 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  LVW + DLR+        A       V+ V I  P  W Q   + +   F+  S  
Sbjct: 1   MSYGLVWFKRDLRLA--DHAALATAARRGPVLCVLIVEPSLWAQPDAARQHYEFMLESAR 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L++ G            +++  LD          L  + +              R
Sbjct: 59  ELHAGLARVGGRLHLL----VGEAVAVLDRLHAAAPFDTLHSHEETGNAASYARDRAVAR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +  + +       + +                ++    + LR + +PA    G
Sbjct: 115 WCRARGVRWHEPAQFGVVRRLDDRDRWQAAWEAQVAAPQVELPEPSRLRFVALPAALQPG 174

Query: 187 PVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                                              G   AL +L  F   +   Y     
Sbjct: 175 AGATWPDRGAIAAVRAPAAVALGLDAFEPPRRQRGGRHAALEVLHDFLDARSGQYRGGIS 234

Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNELIWREFY 291
            P    T+   LSPYL+ G LS R+     +     L    + ++G  ++L+ L W   +
Sbjct: 235 SPLKAPTACSRLSPYLAWGCLSLRELVQATRARVAALPEGDRRRAGLAAFLSRLYWHCHF 294

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +   P++        +    E   +     A   G TG+P++DA +  L   GW++ 
Sbjct: 295 IQKLESEPTLEFRNLHRGYDGLREPEWNQAHFDALVGGRTGWPLVDACVAMLRATGWLNF 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  S     L + WR    +     LD +   +    Q    +G   +   R++NP
Sbjct: 355 RMRAMLVSVAAYPLWLHWREVGLWLARAFLDYEPGIHWS--QLQMQSGTTGINTTRVYNP 412

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465
             Q +  DPQG F+R WLP L  VP  ++  P    +         +  +  LP+VD + 
Sbjct: 413 IKQARDHDPQGVFVRRWLPALRRVPDTWLFEPWRMPESVQARCGVRVGEDIALPVVDLES 472

Query: 466 ACHHTLNQYYAAKKQSLL 483
           A      + +A + Q  +
Sbjct: 473 ATRAAKTRIHALRAQPEV 490


>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
 gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
          Length = 469

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 181/469 (38%), Gaps = 29/469 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSHFI 61
           ++W RNDLR+ DN  ++ A          +V+ V++  P       W      A ++ FI
Sbjct: 11  VLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRAKFI 70

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  +++ L   G               + L +         L    +   +E     
Sbjct: 71  QECVADLRQRLQGLGSDLVV----AVGQPEQLLPALLEGGGAAPLVLTAEEVTSEEAAVD 126

Query: 122 LLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +   R       K        +     L+             K     L  A        
Sbjct: 127 VAVARAIKPAGGKLLRYWGHTMYHYDDLDLPDVFTPFKEKVEKRAALPLPPAPRLGATAA 186

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD-IP 237
           A           +P             F  GE  AL  L+ +  +      Y + R+ + 
Sbjct: 187 AALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKYYLWDSDLLSTYFDTRNGML 246

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               +++ +P+L+ G +SPR+ ++ +++             +  + ELIWR+F+R     
Sbjct: 247 GGDYSTKFAPWLAQGCISPRKIFHEIRKYESQRFSNK--STYWVIFELIWRDFFRFFALK 304

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           + +    +        + WN D  L   W++G TG P++DA MR+L   G+M NR R   
Sbjct: 305 HGNRIFFETGTSGLPLV-WNPDPELWARWREGRTGLPLVDANMRELAATGFMSNRGRQNV 363

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+LV DL VDWR G +YF   LLD D+ SN G W   A+ G         FN   Q K 
Sbjct: 364 ASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWGNW--VAAAGLTG-GRVNHFNIAKQSKD 420

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460
           +DP G +++ W PEL NVP   +H P     +        + ++YP PI
Sbjct: 421 YDPTGEYVKTWCPELKNVPVTKVHEPWLMSKEEQERSGCRIGVDYPNPI 469


>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
          Length = 551

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 199/498 (39%), Gaps = 31/498 (6%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQW---------RQHGISARQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P                    +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        I      S     P   I  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQR- 234
           P +  TG      +PR  +  +  I       F  GE  AL  +R+   +K +    ++ 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                      T+ LSPYL  G LS R  ++ +++ +            S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTKKHTNPPV-SLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W + +      Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQS 481
             A          A   +
Sbjct: 494 AIASKECKKMMGEAYASN 511


>gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4]
          Length = 485

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q              D          +  +  ++ +++  +    +        
Sbjct: 62  INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEVIYSHQEVGLACTFQRD----LA 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +   +       LP  +++  A         +++ +       DL       +     
Sbjct: 114 LAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
              S+IP            M   G   A   L  F   +   Y      P+      S++
Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S R+ +  L + +       +    +  + L W   +         +    
Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +    +   +  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L  
Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            + VDWR G  Y     LD +   +   +Q  A  G       RI+NPT Q +  D +G 
Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI  W+PEL  VP   +  P         + +  L   Y  P++D + +     ++ +  
Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466

Query: 478 KKQSLL 483
           +K   +
Sbjct: 467 QKLPAV 472


>gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
 gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
          Length = 484

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/486 (21%), Positives = 182/486 (37%), Gaps = 32/486 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + +VWL+ DLR+ D+  L  AC  SDA ++ +++  P+       + R   F++ SL  
Sbjct: 5   PLQVVWLKRDLRLQDHAPLAFACR-SDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+  G          F D I+ L+       + +L  + +  ++          R 
Sbjct: 64  LNAGLAPHGGRV----TCWFCDPIDALNRLASDFTLVQLLSHEETGLSVTFERDQAVSRW 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                          P G++             +RK + Q   + D   +    +     
Sbjct: 120 CDDN----GVPWHQWPNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWARVRWCHLP---- 171

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
                          A +   P GE  A   L  F  ++   Y      P    TS   L
Sbjct: 172 -----DQTIPADWRSAAEGFQPGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTSCSRL 226

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--M 303
           SPYL+ G LS RQ   RL++         +    +  + L WR+ +        ++    
Sbjct: 227 SPYLAWGNLSVRQVIQRLRQ--DADTPDWRPARRALTSRLKWRDHFIQKFESECAMEGRP 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                      +       L AW+ G TG+P++DA+MR L+  G+++ R+R +  SFL  
Sbjct: 285 INQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAMLVSFLCH 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L++DWR G  +     LD +   +   +Q  A      +   RI+NP  Q    D  G 
Sbjct: 345 HLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQA--AVTGIHTIRIYNPVKQSLEQDSDGQ 402

Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ + PEL  +P    H P         L + +   +YP PI+D  +         +  
Sbjct: 403 FIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIIDLSETGPRARQLLWQW 462

Query: 478 KKQSLL 483
           + +  +
Sbjct: 463 RARPDV 468


>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
 gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
          Length = 522

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/499 (22%), Positives = 177/499 (35%), Gaps = 35/499 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQV 68
           + W R  LR  DN +L  A   S   V  VF+   +  +   I   A Q  F+   L  +
Sbjct: 10  IHWFRKGLRFHDNPSLLHALRTSH-HVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQDL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127
              L   G+     +     ++  +   +  +  +T+L ++ + E     RD  + +  +
Sbjct: 69  DTRLRAYGLRLFVAR----GNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAV 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   ++    L     I+ +      +     + ++++       S    A      
Sbjct: 125 DEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFASC 184

Query: 188 VTPSNIPRFFDYPFQAIDP-------------MFPIGEQNALHILRKFCKEKVYYYVEQR 234
             P    R   Y    ++                  G +     L+       +   +  
Sbjct: 185 SVPLEALRDERYNMVTLEELGMRCEHPSKFVGGETEGLRRVEKHLQNQGWVTQFEKPKTA 244

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWR 288
               +  T+ LSPY S G LS R  ++RL + +  L     S              ++  
Sbjct: 245 PTSLLPSTTGLSPYFSFGCLSVRHFYHRLDKIYAKLRSHQTSASSKSRVMIERTRCVLLL 304

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E           +                 D           TGFP IDA M QL   GW
Sbjct: 305 EMLSRTCRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKEGW 364

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G++ F   LLD D + N G W W + +      Y R
Sbjct: 365 VHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGS-AFYHQYTR 423

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           IF P   GKR DP GTFIR +LP L + P QYI+ P              + ++YP P+V
Sbjct: 424 IFCPVRFGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMV 483

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           DH+      L      ++Q
Sbjct: 484 DHEIVSQQNLELMREIREQ 502


>gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata]
          Length = 542

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/512 (22%), Positives = 195/512 (38%), Gaps = 40/512 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS++++W R+ LR+ DN AL  A  + D   +++ +FI   E      +   +  F+  S
Sbjct: 1   MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L    +           + ++   S   Q+ + KL + +  E    RRD  ++
Sbjct: 61  LEDINNQLRSVSLSL-GRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVK 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPV 179
                  I C       L  P  ++N    +  +        +Q                
Sbjct: 120 NLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQIIGLPPRPVPDPDWHN 179

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR----- 234
                       ++  F + P      ++P        +     + +   +++QR     
Sbjct: 180 VKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLKVEE 239

Query: 235 -------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------KPK 275
                            ++    +S +L  G LS R+ +  + + F D+           
Sbjct: 240 SAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLGMLM 299

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           SG      +LIWRE++  +    P+    +             +   LQ W QG TGFP+
Sbjct: 300 SGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLNIPWAETNHIQLQRWTQGKTGFPL 359

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDAAMRQL   GW+H+ LR   A+FL +  L  +W  G  YF+  LLD D +   G W W
Sbjct: 360 IDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMW 419

Query: 395 AASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447
            +S+  + +     +  P    KR DP G +I+ ++PEL NVP +YIH P          
Sbjct: 420 VSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQED 479

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               + ++YP  ++D   AC          + 
Sbjct: 480 SDCVIGIHYPERLIDLNVACKRNTIAMRTLRN 511


>gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
           Short=zCRY-DASH
          Length = 520

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57
           MS     +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             +
Sbjct: 1   MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  S+  ++  L + G      Q    D   E +                  E   V
Sbjct: 60  LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQL-GSVSTVAFHEEVASEEKSV 118

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173
                         +   +  ++        +H   +  VYT FRKA+            
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229
             +    P+    GP+   +     +            G +       K           
Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+WR
Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           ++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+L   G+
Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R 
Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           FN   QG  +D  G ++R W+PEL  +    +H P +         +  L+  YP PI+
Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
 gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
          Length = 539

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/510 (21%), Positives = 191/510 (37%), Gaps = 40/510 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL +A  + D    +I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLDD 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K L +     Q           +       Q R+ K+      E     RD+ +    
Sbjct: 67  IDKQLKEV-SDGQGGLLICEGQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAINNLC 125

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------ 181
           +   I      S  L     +          T        +++    R +  P       
Sbjct: 126 RELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHIIGLPPRPVHDPQFDGVGF 185

Query: 182 -------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI----------LRKFCK 224
                   R  G +  +  P  F+     +  +  I                  + +   
Sbjct: 186 VQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGERLKVEQHAF 245

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKPKSGA 278
           E+ YY   Q     +     +S +L  G LS R+ +  + + F ++           +  
Sbjct: 246 ERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACIRGVQMTSG 305

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
                +LIWRE++  +    P     +             +   LQ W+ G TGFP+IDA
Sbjct: 306 AHITGQLIWREYFYTMSVNNPQYDRMEGNEICLNIPWAKPNEDHLQRWRLGQTGFPLIDA 365

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G W W +S
Sbjct: 366 AMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNWMWVSS 425

Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451
           +  +  +   ++  P    KRFDP G +I+ ++PEL NV  ++IH P     +       
Sbjct: 426 SAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEFIHEPWRMTAEQQEIAEC 485

Query: 452 -LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            + ++YP  I+D   A    +    A +  
Sbjct: 486 LIGVHYPERIIDLSLASKRNMAAMKALRNS 515


>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
          Length = 567

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/499 (22%), Positives = 175/499 (35%), Gaps = 36/499 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R DLR+ DN AL AA   + +  I +F   P    Q  +   +  F+      
Sbjct: 7   PTVIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRFLLECQND 66

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +S  +          +    +               T L +    +     RD+ + K
Sbjct: 67  LSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122

Query: 126 RLQHRVIC---------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                 +             D+ V    G       Q+ K        +    V A  R 
Sbjct: 123 LANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAPERI 182

Query: 177 LPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKE 225
                   +R   P    +IP   +          P                   +    
Sbjct: 183 PDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIA 242

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-- 283
                         Q T+ LSP+L  G LS R+ W+ +++         K  +    N  
Sbjct: 243 TFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLP 302

Query: 284 -ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L++RE +    A    V                      + WK+G TGFP IDA MRQ
Sbjct: 303 GQLLFREMFFAAQAALGPVYAQTRGNKIVRFQAEV----WFRRWKEGRTGFPWIDALMRQ 358

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL +    V W  G E F   L+D + ASN G W W + T   
Sbjct: 359 LKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFF 418

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPI 460
           +  Y R ++P   GK++DP+G FIRH++PEL +   +YI+ P     ++     +YP P+
Sbjct: 419 TQ-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKSYPEPM 477

Query: 461 VDHKKACHHTLNQYYAAKK 479
            D  +     + Q   A +
Sbjct: 478 FDFDERRQTCIAQMKEAYE 496


>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
 gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
          Length = 520

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/479 (24%), Positives = 195/479 (40%), Gaps = 30/479 (6%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57
           MS     +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             +
Sbjct: 1   MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  S+  ++  L + G      Q    D   E +                  E   V
Sbjct: 60  LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQL-GSVSTVAFHEEVASEEKSV 118

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173
                         +   +  ++        +H   +  VYT FRKA+            
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229
             +    P+    GP+   +     +            G +       K           
Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+WR
Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           ++++ +   Y +       +   + + W  D  +  AWK+G TG P +DA MR+L   G+
Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R 
Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           FN   QG  +D  G ++R W+PEL  +    +H P +         +  L+  YP PI+
Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 476

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 210/469 (44%), Gaps = 19/469 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V LVW R+DLR+ D+ AL AA       V  V+I  P++       A    +   SL 
Sbjct: 1   MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L+Q+G         +       L +         + +NR+YE +   RD  ++++
Sbjct: 60  ALAEALAQRGSRLLMLHGPSLG----TLQALAALTGAEAVLWNRRYEPHIEARDTRIKRQ 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   +  +SF+ S+L  P  I       Y+V+TPF K  +       L           
Sbjct: 116 LRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPFWKNALAQWRLRPLWEASARLPSPD 175

Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               P         P                GE  A   L+ F    +  Y + RD  A+
Sbjct: 176 QAGAPDGRHLDAIVPETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDRMAV 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LS +L  G     +   +     V     P      +L EL WREF  H+M  YP
Sbjct: 236 DGTSRLSAHLHFG-----EVSVQRVAAAVLAAEVPAPDRERFLAELGWREFAHHVMHHYP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V          +          L AW++G TG PIIDA MRQL   GWMHNR+RMI AS
Sbjct: 291 HVVDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRMIVAS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           ++ K L + WR G  +F   L+D DLA+N  GWQWAA TG D+ PYFR+FNP  Q  +FD
Sbjct: 351 WVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQAMKFD 410

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKA 466
           PQG +I  WLPEL  +P     AP    D    L+  YP  P VD  + 
Sbjct: 411 PQGEYIARWLPELAALPLPARFAPWEHPDLLRRLAPRYPRQPQVDLAQG 459


>gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 208/457 (45%), Gaps = 32/457 (7%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           + AL AA  N   +V+A F+  P          R+  ++  +L +++  L  + +V    
Sbjct: 17  HPALVAAAQN--EQVLACFVLDPRLEASS--GERRLQYLGDALRRLRSDLDGRLLV---- 68

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
                    E +     +   + +  +  +     RRD  +   L    +  +    ++ 
Sbjct: 69  ---TRGLPHERIPRIVKEIGASSVHVSTDFAPFGRRRDDRVRAALGSVPLVATGSPYLVS 125

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
           P G +       Y+V+TPF +   +   ++  +S    A  +               P  
Sbjct: 126 P-GRVTKQDGTPYQVFTPFLRKWREVGWRSPAKSGAESAHWIDPDQVAIPQCDI---PDP 181

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                   GE+ AL     F  + +  Y   RD P ++ TS++S +L  G + PR     
Sbjct: 182 GATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRTMVAD 241

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWNKDS 320
           L           + GA ++L EL +R+FY  ++  +P+         +         +  
Sbjct: 242 L--------DLREPGAQAYLRELAFRDFYADVLHHWPASAWRNWNHQFDGIRTDTGAEAK 293

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              ++WK G TGFP++DA MRQL   G++HNR+RMI ASFLVKDL + W+ G E+F+ QL
Sbjct: 294 RRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWGAEWFLDQL 353

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGD+A+N  GWQW A  G D+ PYFR+FNPT Q  +FDP G +IR W+PEL +V   ++
Sbjct: 354 VDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPELRSVDDAHL 413

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
                   K +    YP PIVDH       L +Y + 
Sbjct: 414 -------RKGERPAGYPAPIVDHGAERAEALRRYQSI 443


>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
 gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
          Length = 465

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 20/474 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R D R +D++AL AA H+S   +I +FI          + A     +  ++   +K
Sbjct: 8   IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFIFDEVFEA---LGAAPKWRLGLAIECFKK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G      +     ++ E L     +     ++++R Y+   + RD  ++  L   
Sbjct: 64  KLERMGSNLILRR----GNACEILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLLNGT 119

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                      +P      +       +      L  N   + +  L  P +     +  
Sbjct: 120 SFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVWPKSDLLS 179

Query: 191 SNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           +             +     +GE+ AL+ L  F   KV  Y   RD P    TS LS  L
Sbjct: 180 NWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHATSGLSENL 239

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G +SPR  +N L+    +   K   GA  +L EL+WREF  HL+  +P     + +  
Sbjct: 240 TYGEISPRLIFNSLR----NTFDKNDLGAEHFLKELVWREFAYHLLWHFP-KLDTQCWRG 294

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                 W   +   +AW QG TG   +DA MR+L T G MHNRLRMI  S+L K L  DW
Sbjct: 295 EWNDFPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLTKHLQTDW 354

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           RIG ++F   L+D D ASN  GWQW A  G D+ PYFRIFNP +Q ++FD  G + + WL
Sbjct: 355 RIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDGQYRKKWL 414

Query: 430 PELNNVPTQYIHA--PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                +  +      P +W L  + ++ N    I+D        L+ Y   KKQ
Sbjct: 415 EADKELHAKAFFDAIPVAWKLSADKINQN---EIIDLSLGRKIALDAYAIFKKQ 465


>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 533

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 138/475 (29%), Positives = 205/475 (43%), Gaps = 24/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R D RI DN AL AAC      VI VFI   E    HG + +    +   +     
Sbjct: 69  IYWVRRDFRIGDNAALSAACATG-RPVIPVFICD-EVVESHGAAPKFR--LGEGVRVFGA 124

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      +     D++  L     Q   T +++NR Y+     RD  ++  L+  
Sbjct: 125 ALAVVGSRLVLRR----GDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALKAD 180

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185
            +  +     L   P ++       Y+V+TP  K +        + A            +
Sbjct: 181 GVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVATPIPAPASVPAPDVWPTS 240

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  A   L  F + +V  Y   RD+P + GTS+L
Sbjct: 241 DRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLPGVDGTSRL 300

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SP  CW+           +       +  EL+WREF  HL+   P +    
Sbjct: 301 SENLTYGEISPAVCWHAGWAAIHSGKGQA----EIFCKELVWREFAYHLVHHTPHIVDRN 356

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W       +D+  + AWKQG TG   +DAAMR++   G MHNR RMI AS+L K L
Sbjct: 357 WKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIVASYLTKHL 416

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           +  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD  G + 
Sbjct: 417 MTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDRAGLYA 476

Query: 426 RHWLPELN-NVPTQYI----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           R W+ E   + P   +      P +W      +  YP P+VD        L  Y 
Sbjct: 477 RTWIAEGQGDAPDTALSYFDAIPKNWGLAA--TDQYPAPVVDMATGRQRALEAYK 529


>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 40/507 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A +N++ K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEAHNNAE-KLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+  G      Q     + +        +  +  + Y +        RD+ ++  
Sbjct: 60  DLNNNLALVGGRLYILQ----GNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                I C       L  P SI+     +        +   + +         V  + + 
Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------------------- 225
               P++I   F          F I  +   ++   +                       
Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235

Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
               +Y   Q +   +   S LS  L  G LS R+ +  L + F++         +S  +
Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           +LIWR+++  +     +    +            I+  ++  +L+ WK G TG+P IDA 
Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDAG 355

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           MRQL   GW+H+ +R   ASFL + DL + W  G  +FM  LLD D +  +G W W +S+
Sbjct: 356 MRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSSS 415

Query: 399 GNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451
             + +        P   G R DP G +I+ ++PEL N+P Q+++ P    +         
Sbjct: 416 TFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGCI 475

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  +YP  IVDH  A      +  A +
Sbjct: 476 IGKDYPNCIVDHTIASKGNRKKMLALR 502


>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
          Length = 521

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 118/475 (24%), Positives = 195/475 (41%), Gaps = 33/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIYAS 64
           +  LRNDLR  DN+  + A  N++  ++ ++   P  +              +  F+  S
Sbjct: 8   ICLLRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLDS 66

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDK 121
           +  ++ +L  KG      Q        E +     Q               E   V +  
Sbjct: 67  IRDLRNTLLSKGSNLVVRQ----GKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGV 122

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                     +   +  ++        +H  ++  VYT FRKA+        +   P   
Sbjct: 123 KDVCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQL 182

Query: 182 IRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
             L   +    IP      +               GE   L  L+ +  +      Y E 
Sbjct: 183 KPLPSGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDAVATYKET 242

Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+    +  +++ +P+L++G +SPR  ++++K+   +         +  + EL+WR++++
Sbjct: 243 RNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTANQ--STYWVIFELLWRDYFK 300

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y +       +   + I W KD  L  AWK+G TG P +DA MR+L   G+M NR
Sbjct: 301 FVGVKYGNRLFQVKGL-QDKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAMTGFMSNR 359

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R FN  
Sbjct: 360 GRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
            QG  +D  G ++R W+PEL  +    +H P +            L   YP PIV
Sbjct: 419 KQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNPIV 473


>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
 gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
          Length = 478

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 190/486 (39%), Gaps = 38/486 (7%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------- 56
           M    +VWLR DLR  DN     A   +  +V+ V+   P ++ Q               
Sbjct: 1   MPETAVVWLRRDLRTRDNA--TLAAACAADRVLPVYCFEPRRYGQRAFGGAASFEYDGVG 58

Query: 57  --QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ F   ++  ++  L + G                 L           L Y      
Sbjct: 59  AGRAQFEREAVGDLRDRLREIGSDLFVRH----GRPDAVLPDLVEAVDADHLHYQTLPIP 114

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            E  R+  + + L   V  +      L     +     +M   +TP+R+++       + 
Sbjct: 115 EERTREHQVRRALPEAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREP 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
              P           P  IP   D         D   P+  +      ++  ++ V+   
Sbjct: 175 IEAPAVPPVPADAPQPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETD 234

Query: 232 EQRDIPA-------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             R              +S+ SP+ ++G LSPR  +  +KE   + +       +    E
Sbjct: 235 SLRAYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERVSND--STYWLNFE 292

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++   A Y         I     ++W +D    + W++G TG P +DAAMR+L 
Sbjct: 293 LRWRDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELV 352

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++ NR R   ASFLV DL +DWR G  ++   LLD D ASN G W + A  GNDS  
Sbjct: 353 ATGYVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSRE 412

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
               F+   Q +R+DP G +I  W PEL+ +  +Y   P    ++        L  +YP 
Sbjct: 413 GG--FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREPWRMDEEEQRERGLVLGEDYPE 470

Query: 459 PIVDHK 464
           P+VD +
Sbjct: 471 PMVDPE 476


>gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 162/258 (62%), Positives = 194/258 (75%), Gaps = 2/258 (0%)

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           FC++    Y  QRD PA++GTS+LSP L+ GVLSPRQC +RL  E    L        +W
Sbjct: 30  FCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQCLHRLLTEHPAALDGG--AGATW 87

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           LNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D   LQAW++G TGFPI+DAAMR
Sbjct: 88  LNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMR 147

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QLN  GWMHNRLRMI ASFL KDL +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D
Sbjct: 148 QLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTD 207

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFRIFNPT QG++FD QG F+R WLPEL  VP + +H P +W DK  + L+YP PIV
Sbjct: 208 AAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIV 267

Query: 462 DHKKACHHTLNQYYAAKK 479
           DHK+A   TL  + AA+K
Sbjct: 268 DHKQARQETLAAWEAARK 285


>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
 gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
          Length = 450

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 206/463 (44%), Gaps = 33/463 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   + W R DLR+ DN AL AA   +   D  V+ +F+  P  W     +  +  ++  
Sbjct: 1   MPT-VHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTA--AAGPRVAYLAR 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  +L  +                + + +   +     +      E    RRD  +
Sbjct: 58  SLRALDAALDGR---LVVRH----GRPQDVVPAVAREVEAPTVHVTAATEPYGRRRDDAV 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAI 182
            + L    +  +     + P G +       Y+V+TPFR+A + +   A   R   VP  
Sbjct: 111 AQALGDVPLVATGSPYAVAP-GRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWA 169

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            + G   P       D P           E  A      F  + +  Y E RD P + GT
Sbjct: 170 DVRGDGVPDEPATTVDLPAAG--------EAAARRRWATFVADALADYDEDRDRPDLDGT 221

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +S  L  G L PR     L            +   ++ +EL WREF+  ++  +P   
Sbjct: 222 SSMSVPLKYGELHPRTLLADL------AGAGSSASVATYRSELAWREFHADVLWHHPDAA 275

Query: 303 MG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +  +P               AW +G TG+P++DA MRQL  IGWMHNR+RM+TASF
Sbjct: 276 RRSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTASF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL   W+ G E+F++ L+DGD+  N   WQW A TG D+ PYFR+FNP +QG+RFDP
Sbjct: 336 LVKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            GT++R W+PEL  +P   +H P                IVDH
Sbjct: 396 DGTYVRQWVPELRGIPGGAVHEPWKLPAAAAPDYP--PRIVDH 436


>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
 gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH
 gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
          Length = 523

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 197/475 (41%), Gaps = 33/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIYAS 64
           +  LRNDLR+ DN+ L+ A  N+D +++ ++   P        +        +  F+  S
Sbjct: 9   ICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLES 67

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDK 121
           +  ++ +L +KG      +        E ++    Q        L      E  +V    
Sbjct: 68  VRDLRITLKKKGSNLLLRR----GKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAV 123

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                         +  ++         H   +  VYT FRKA+           +P   
Sbjct: 124 KQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKL 183

Query: 182 IRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQ 233
             L   +   ++P   D+  Q              GE  AL  L  +  E      Y + 
Sbjct: 184 KPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWETNLVASYKDT 243

Query: 234 RDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+       +++ +P+L++G +SPR  + ++ +   +         +  + EL+WR+++R
Sbjct: 244 RNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTANQ--STYWVIFELLWRDYFR 301

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y         +   +   W +D  L  AWK+G TG P +DA MR+L   G+M NR
Sbjct: 302 FVALKYGRRIFFLRGLQDKDI-PWKRDPKLFDAWKEGRTGVPFVDANMRELAMTGFMSNR 360

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R FN  
Sbjct: 361 GRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 419

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
            QG  +D  G +IR W+PEL  +     H P +  + +       L   YP PIV
Sbjct: 420 KQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYPYPIV 474


>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 516

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/482 (25%), Positives = 206/482 (42%), Gaps = 20/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+W R DLR+TDN+ +  +   +DA+V+  FI  P  +    +   +  F++ SL ++
Sbjct: 1   MHLLWFRRDLRLTDNE-IVTSSSGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +        + ++     E       +    KLF+NR  ++              
Sbjct: 60  NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQVEYGINRDKTIVDFY 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                K  +    +   + L  A Q  +    +     Q+  +                +
Sbjct: 120 -----KQLNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITLNLPQL 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQL 245
           T   + + +   +      FP GE  A   L  F K++ Y Y  +   P +     TS L
Sbjct: 175 TFEELKQKYHRFWAVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLSQLGATSHL 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFYPSVCM 303
           SP+L+ G +S R  +   K     L  +PK      ++ + L W + +   + F+P +  
Sbjct: 235 SPHLTFGTISTRTVYQSTKALAEQLKTQPKAEFSLKAFRDRLRWHDSFTQRLYFHPEIAY 294

Query: 304 GKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +  + +             L QAW+QG TGFP++DA+MRQL T+GWM+ R+R + A+
Sbjct: 295 TNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMNFRMRAMCAT 354

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL  +  V W  G +++M+ L+DGDLA +N  WQ  A   N     FRI+NP+      D
Sbjct: 355 FLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYNPSKNIAEKD 414

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P G FI HW+PEL       I       +K   + NYP  I+D  K            +K
Sbjct: 415 PLGEFIYHWIPELRGYSLLEI-----EQEKYIETSNYPKVILDWSKTRKVNGKIVSDLRK 469

Query: 480 QS 481
           Q+
Sbjct: 470 QT 471


>gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
 gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 143/491 (29%), Positives = 225/491 (45%), Gaps = 30/491 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W RNDLRI DN   Y A   S    A+++ +F      W  H  S  +   +Y S
Sbjct: 71  KTVIHWFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQS 130

Query: 65  LLQVQKSLSQKGIVFQYH-------QCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEIN 115
           L  +   LS+ GI            + SN    + WL      +      L  N +Y  +
Sbjct: 131 LKSLHGKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLAD 190

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E+ RD  +      +     F D+ ++ PG +  +    Y V++P+ K     ++     
Sbjct: 191 ELYRDIRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKSS 250

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-- 233
           +  +  + L   +   +           +   F                    +  +   
Sbjct: 251 TNLIEPLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNVG 310

Query: 234 ----RDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
               +D    + +S LSPYL++G+LS R    + +  +    V    K  +    ++ E+
Sbjct: 311 NYLDKDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIREV 370

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FY+ ++ F+P + M  PF   + +I+W+ +    Q W  G TGFPI+DA MR+L+ 
Sbjct: 371 AWRDFYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKLSQ 430

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+++NR RMITASFL K+LL+DWR GE++F   L+D DLASN GGW + +STG D+ PY
Sbjct: 431 DGYINNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQPY 490

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FR+FN   Q + FDP G FI+ W+PEL N  ++ +H             +YP PI D K 
Sbjct: 491 FRVFNMERQSRAFDPNGEFIKKWVPELKN--SKNVH------SSIQEVESYPNPITDSKS 542

Query: 466 ACHHTLNQYYA 476
           +    L  Y  
Sbjct: 543 SRQRALEIYNE 553


>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
          Length = 468

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 143/480 (29%), Positives = 219/480 (45%), Gaps = 27/480 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W+R D R++DN AL AAC      V+ +FI            A     +   + 
Sbjct: 1   MTT-IYWVRRDFRLSDNPALVAACER--GAVVPLFICDEVIEGH---GAAPKWRLGLGVE 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
              ++L   G      +     D++  L +         + +NR Y+ +  +RD+ ++  
Sbjct: 55  AFAEALHAVGSKLILRR----GDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAA 110

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---I 182
           L+   +   S    VL  P ++       YKVYTPF K +        L +  +PA    
Sbjct: 111 LKEDGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPDTW 170

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  ++  ++ +  +   + + P   +GEQ A   L  F    +  Y + RD  A  GT
Sbjct: 171 PASDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L+ G +S RQCW+  +    D       GA ++L E++WR+F  HL+   P + 
Sbjct: 231 SLLSENLAYGEISARQCWHAGQRAMADGK----PGAETFLKEVVWRDFAYHLVHHTPRIT 286

Query: 303 MGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  W               AWKQG TG  ++DAAMR++   G MHNR RM+ AS+L
Sbjct: 287 TANWREEWEAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L+ DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FD  
Sbjct: 347 TKHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKA 406

Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475
           G +   WL E+   P     A     P +W     +   YP  PIV   +     L+ Y 
Sbjct: 407 GRYRMRWLAEITGKPQDTASAYFDAVPRAWGLDPTMG--YPSAPIVTASEGRKRALDAYE 464


>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
          Length = 862

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/506 (25%), Positives = 198/506 (39%), Gaps = 44/506 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHGISARQSHFI 61
           AM   LVW R DLR+ DN AL +A       VI VF+        Q           +++
Sbjct: 228 AMKPVLVWFRRDLRLHDNPALISALE-HGVPVIPVFLWCINEETGQNFTLATGGATKYWL 286

Query: 62  YASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + +LL++ +SL  + G    +    +     E L S   +     +  N  YE     RD
Sbjct: 287 HHALLKLNQSLIQRFGSHIIFRVARS---CEEELVSLVHETGADTIIINAVYEPWLKERD 343

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHAL----------QMYKVYTPFRKALIQNLV 170
            L+ + L+   +      S  L     ++                        A I   +
Sbjct: 344 DLISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPL 403

Query: 171 QADLRSLPVPAIRLTGPVT-------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
            A            +  +        P             I   +   E  A   L  F 
Sbjct: 404 DAPRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAVTIRESWDFSEDGAYTCLANFL 463

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           ++ V +Y ++        TS +SPYL  G +SPR   +             K     +L 
Sbjct: 464 QDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTVLHEA--------YFTKKNVPKFLR 515

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L WR+    L+  +P +   +P  P  +   W+ D + L+AW++G TG+P++DAAMR+L
Sbjct: 516 KLAWRDLAYWLLILFPDMP-SEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMREL 574

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWM N  R + ASFLV  L + W  G  +F   LLD D+A N   WQ    +G D  
Sbjct: 575 WLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGGMSGLDHW 634

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            +  + +P       DP G+++R W PEL  +P +YIH P              L  NYP
Sbjct: 635 NF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYP 692

Query: 458 LPIV-DHKKACHHTLNQYYAAKKQSL 482
             IV D ++    +L      +K+ L
Sbjct: 693 HRIVLDLEERREQSLKDVVEVRKKHL 718


>gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 381

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 143/270 (52%), Positives = 183/270 (67%), Gaps = 2/270 (0%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +P+GEQ AL  L +F +E V +Y  +RD P IQ TS+LSPYL+IG+LS RQC   L    
Sbjct: 114 WPVGEQYALEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQ 173

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                    G  +WL+EL+WREFY+H++  +P V    PF   T+KI+WN +   L AW+
Sbjct: 174 HGNFHLVNEGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQ 233

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG PI+DA MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+
Sbjct: 234 MGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAA 293

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NNGGWQW ASTG D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S  
Sbjct: 294 NNGGWQWCASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS-- 351

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            K DL LNYP PIVD K+     +  +   
Sbjct: 352 SKTDLGLNYPKPIVDLKETRLKAIETFKNI 381


>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
          Length = 520

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57
           MS     +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             +
Sbjct: 1   MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  S+  ++  L + G      Q    D   E +                  E   V
Sbjct: 60  LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQL-GSVSTVAFHEEVASEEKSV 118

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173
                         +   +  ++        +H   +  VYT FRKA+            
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229
             +    P+    GP+   +     +            G +       K           
Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+WR
Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           ++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+L   G+
Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R 
Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           FN   QG  +D  G ++R W+PEL  +    +H P +         +  L+  YP PI+
Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
 gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
          Length = 431

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 211/469 (44%), Gaps = 45/469 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67
           ++L   R DLR+ DN AL  + +N  A    +FI  P Q + +   S +  +F+ +SL  
Sbjct: 1   MNLFIFRRDLRLYDNTALLKSLNNETAT---IFIMDPAQVKNNEYRSEKALNFMISSLYD 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +                D ++ L     ++ + +++ NR Y    ++RD+ +++  
Sbjct: 58  LMTDIEGNHGKLAVFH----GDPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEFS 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I  +  D   L    +   +   +K +T F    ++  V+  +  +    +     
Sbjct: 114 IKNNIKFNALDDYFLSDPELRTGSGSFFKNFTAFYNRAMEINVKKPVYEIKKSNLIPIDG 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                                            +     +      RD P +  TS LS 
Sbjct: 174 DDMELK-----------------YNNYGRKTAIEKMHNFIKNDYSLRDFPELNMTSFLSA 216

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            +  G +S R+ ++ +K+               +  +L WR+FY ++   +P V      
Sbjct: 217 DIKFGNISIREAYHYIKD-------------PEFRRQLYWRDFYLYIAYHFPYVFGSNFN 263

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
             +  K E       + AWK G TG+PI+DAAMR LN  G+++NRLRMI +SFLVKDL V
Sbjct: 264 RKYNIKWEN--KEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLVKDLHV 321

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF  +L+D D ASNNG WQW ASTG +S   +RI NP IQ K+FDP+  FI+ 
Sbjct: 322 DWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPECKFIKR 381

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           ++ EL+++  + IH  +          NYP P+VDHK A          
Sbjct: 382 YVNELSDLEPEIIHNLYKIRLN-----NYPAPLVDHKTAVMEFRKLINQ 425


>gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 387

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 204/390 (52%), Positives = 272/390 (69%), Gaps = 4/390 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLNELIWREFYRHLMIWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWA
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWA 387


>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
          Length = 520

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 196/498 (39%), Gaps = 42/498 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L W R DLR+ DN +L     NS      V+   P + +Q  +S  +  F+  SL  +
Sbjct: 19  TSLHWFRKDLRLHDNPSLRECLRNSKV-FYGVYFLPPSEAKQGSVSLNRWGFLLESLRDL 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL + G      +     + +E L +   +  + ++ +    E     RD ++    +
Sbjct: 78  DTSLVECGSRLFVIR----GNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAK 133

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLT 185
              I      S  L              +         ++++Q      PVP +      
Sbjct: 134 ENGIEVISRVSHTLY--DPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKVGRKLFG 191

Query: 186 GPVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYV 231
             VTP        Y    +D +              +  GE  AL  +    +  V    
Sbjct: 192 ACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQWMVKNDF 251

Query: 232 EQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            + +I         + LSPYL  G LSPR    R+ EE++               +L+WR
Sbjct: 252 TEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIKSKGVSPPSE--LFVKLLWR 309

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF+  +    P         P + +I W      L+ WK+G TGFP IDA MRQL T GW
Sbjct: 310 EFFFVVGGQIPD-AHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWIDAIMRQLRTEGW 368

Query: 349 MHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN--DSVPY 405
           +HN  R   ASFL +    V+W  G + F    LD + + N G W W +++      VP+
Sbjct: 369 IHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWVSTSTFVKGPVPW 428

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
              F P   GK+ DP G ++R ++PE+ N+PT+YI  P              +  +YP P
Sbjct: 429 ---FCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCVIGRDYPAP 485

Query: 460 IVDHKKACHHTLNQYYAA 477
           IV+H K     + +    
Sbjct: 486 IVNHVKQRAICVQRMQEL 503


>gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays]
 gi|219888435|gb|ACL54592.1| unknown [Zea mays]
          Length = 550

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 201/464 (43%), Gaps = 43/464 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61
           V +VW RNDLR+ DN+AL  A   S+A V+ V+   P         +      A ++ F+
Sbjct: 52  VAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRAQFL 110

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +++SL +KG+              E L S         ++ +++    E+  ++
Sbjct: 111 IECLGDLKQSLRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 166

Query: 122 LLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRKALI 166
           L+ K L+   I +                   + +     +      +  VYT FRKA+ 
Sbjct: 167 LVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVE 226

Query: 167 QNLVQADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------- 215
                 +   LP    P    +                         G            
Sbjct: 227 SKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGMHFIGGESAALG 286

Query: 216 LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
                 + K+++  Y   R+ +     +++ SP+L+ G LSPR     +K      +   
Sbjct: 287 RVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVAND 346

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
               +  L ELIWR+++R L A Y +        P     +W++D  L ++W+ G TG+P
Sbjct: 347 --STYWVLFELIWRDYFRFLSAKYGNAIFH-LGGPRKVVSKWSQDQALFESWRDGRTGYP 403

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           +IDA MR+L+  G+M NR R I  SFLV+D+ VDWR+G E+F + LLD D ASN G W +
Sbjct: 404 LIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPASNYGNWTY 463

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            A  GND     R F+   Q K +DP+G ++ +WLPEL ++  +
Sbjct: 464 GAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKE 506


>gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2]
 gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena
           XCL-2]
          Length = 479

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 148/488 (30%), Positives = 220/488 (45%), Gaps = 31/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVWL+ +LRI  + AL AA   SD  ++A +   PEQ     I A  + ++  SL 
Sbjct: 1   MKT-LVWLQRELRINHHPALEAAMAASDDIIVA-YFHDPEQ----TIGAANTVWLANSLQ 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q+    +       +        + L+      ++ ++FY  Q         +     
Sbjct: 55  QLQQDFKTRHGRLWCLE----GIFEQQLEQVIQTHQIEQVFYTFQLGHPFKAMQQQALNV 110

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            Q   +  ++F+    L    +LN + Q YKV+TPF   L + L + +  S P+  +  T
Sbjct: 111 CQRCQVPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPIDTLEKT 170

Query: 186 GPVTPSNIPRFF----------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +                   + I   + +GE  A      F  E +  Y + RD
Sbjct: 171 ARTVCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLANYEQDRD 230

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PAI GTSQLSP+L  G L  R     L     +           WL +L WREF R ++
Sbjct: 231 FPAIDGTSQLSPHLHFGELHSRAIVFELLSLETE-PTIANQAIRVWLRQLAWREFARAIL 289

Query: 296 AFYPSVCMGKPFIPWTEKIEW-----NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +P          +           ++ S   QAW +G TG PIIDA M+QL   GWMH
Sbjct: 290 WHFPHTETHPFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGMKQLWETGWMH 349

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ AS+L K+  +DWR G ++F   L+D D A+N  GWQW A  G D+ PY+R+FN
Sbjct: 350 NRVRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGVDAAPYYRLFN 409

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q ++FD  G ++R WLPEL     ++IHAP               PI+D  ++  H 
Sbjct: 410 PVRQSEKFDANGQYLRQWLPELKTYSNKHIHAPWLIAPNEKHFC----PIIDLTESRQHH 465

Query: 471 LNQYYAAK 478
           L++    K
Sbjct: 466 LDKVATLK 473


>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
 gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
          Length = 513

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/499 (21%), Positives = 185/499 (37%), Gaps = 41/499 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++M     W R DLR+ DN AL  +  N  A    V+   P   ++  +S  +  F+  S
Sbjct: 17  SSM----HWFRKDLRLHDNPALLESFKNCQA-FYGVYFLDPASVQRSNLSPNRWWFLLES 71

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  +L   G      +       ++ +     Q  + +L      E    +RD ++ 
Sbjct: 72  LRDLDYNLRSLGSRLLVVR----GQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVT 127

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              ++  +      S  L     +          T    A     +             +
Sbjct: 128 HLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTV 187

Query: 185 TGPVTPSNIPRFFDYPFQAI--------------DPMFPIGEQNALHILRKFCKEKVYYY 230
            G       P   D     +                 +  GE  AL  L    K+     
Sbjct: 188 FGACLTPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKCAEND 247

Query: 231 VEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            E+R           + LSPY+  G LSPR  + +L   ++           +    L+ 
Sbjct: 248 FEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMKEKKSIPPA--TLFTGLVR 305

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE + H+ +    +       P + +  W ++   L+ WK+G TGFP IDA MRQL   G
Sbjct: 306 RELFLHVASHNADLDKMLD-NPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLREEG 364

Query: 348 WMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVP 404
           W+H+  R     FL +    V W  G + F    LD + + N   W W + +   + +VP
Sbjct: 365 WIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSCSSYVHGAVP 424

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458
           +   + P   GK+ DP G +I+ ++PE+  +P++Y+  P +         +  +  +YP 
Sbjct: 425 W---YCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPS 481

Query: 459 PIVDHKKACHHTLNQYYAA 477
           PIVDH +     + +    
Sbjct: 482 PIVDHMEQRMICVQRMQQL 500


>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
 gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
          Length = 469

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/484 (28%), Positives = 220/484 (45%), Gaps = 40/484 (8%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS+    +VW R D R  DN AL+ A       +I V+I                 +I  
Sbjct: 1   MSISQIAVVWFRKDFRTDDNPALFEATKI--RSIIPVYIIDENNCSIRKPGKAARIWIAE 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ + KSL        +H      ++I  L +   + +   L++N  Y+  + + D+ +
Sbjct: 59  SLIDLNKSLD-------HHLKIYSGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQI 111

Query: 124 EKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +       I ++F+  +L  P  +       Y+++T F+  +++  ++        P
Sbjct: 112 RTEILKDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPP 171

Query: 181 AIRLTGPVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            IR    +             I        Q I   + I EQ+A  +L++F  +K+  Y 
Sbjct: 172 KIRYCKEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYH 231

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             RD P   GTS LSPY++ G +SP + W  L       +         +L EL+WRE +
Sbjct: 232 IDRDYPGKNGTSTLSPYINFGQISPNRIWFALVRFLPQSI--------QFLTELLWRE-F 282

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            + +         +      +   W  D    + W +G TG+PI+DA +R+L + G+MHN
Sbjct: 283 AYNILNTNPELGSQNLQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHN 342

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI  SFL K+LL+ W+ GEE+F   L+D D ASN   WQW A +G DSVPYFRIF+P
Sbjct: 343 RVRMIVGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSP 402

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T Q K+FDPQ  +   WLPE  +        P    +K    +    P+V+ K +    L
Sbjct: 403 TTQTKKFDPQLQYSDKWLPEYRS----TCFTPVHLQEKCRTPV---EPVVEEKVSRKKAL 455

Query: 472 NQYY 475
             + 
Sbjct: 456 TAFR 459


>gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           major strain Friedlin]
 gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain
           Friedlin]
          Length = 541

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 125/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQH---GISARQSHFIY 62
           V L   R DLR+ DN  L A C  +      V+  F   P Q  +            F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +D +  +     + +V     +         R   
Sbjct: 87  ESLVDLDGA-AQLNGGLVCLRGSD-EDCLRRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180
                Q  V      D  L P   ++  + Q Y V+TPF            A    + V 
Sbjct: 145 DYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAVPLMVNVS 204

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF---CKEKVYYYVEQRDIP 237
            ++      P             +    P  + +           C E++  Y + RD  
Sbjct: 205 KVQAMLVSQPKKCLEHHLVDPALVYTHMPQVQDHGGRTEGMKRLACVERLKQYADVRDDI 264

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288
           A   TS LSP++  G +S R+ W+   +         +   +     ++           
Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVQALGTGHAFTRQLVWREFYAMLAFTRPRLLQGQ 324

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 +  +          PF P  +  +W+  +   +A+K+G TG P++DAA+R L  
Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPLYDNYKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW HNR R++ ++F VK L +DWR  E +F +  +D D+ASNNGGW W++  G D+ PY
Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVASNNGGWLWSSGQGADAQPY 444

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450
           FR FN   Q +RFDP   FI  W+PEL  VP   +H    +  K                
Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEEYCAKARGRATATHSRKRSGQ 504

Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               +   +YP PIVD K A    + ++    K
Sbjct: 505 VKAKEYPTSYPAPIVDIKAATKAIIEEFKKYGK 537


>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
 gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
          Length = 560

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 126/507 (24%), Positives = 200/507 (39%), Gaps = 40/507 (7%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEKRLQHRVICKSFDDSV-----------LLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            +        I      S             L       +  +    Y  F     +   
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEPPE 196

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
                   +P +  TG      +PR  +  +  I       F  GE  AL  +R+   +K
Sbjct: 197 PIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDK 256

Query: 227 VYYYVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            +    ++            T+ LSPYL  G LS R  ++ +++ +            S 
Sbjct: 257 EWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SL 315

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WR+F+  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M 
Sbjct: 316 TGQLLWRDFFYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMI 374

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +  
Sbjct: 375 QLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSF 434

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
               Y RI++PT  GK++DP G +IRH++P L ++P +YI+ P +            +  
Sbjct: 435 FYQ-YHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGK 493

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +YP P+VDH  A          A   +
Sbjct: 494 DYPKPVVDHAIASKECKKMMGEAYASN 520


>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
           (Silurana) tropicalis]
          Length = 523

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 110/475 (23%), Positives = 182/475 (38%), Gaps = 33/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIYAS 64
           +  LRNDLR+ DN+ L+ A  N+D +++ ++   P        +        +  F+  S
Sbjct: 9   ICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYGGTHYFNFPKTGPHRLKFLLES 67

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G      +        E +     Q          +             
Sbjct: 68  VQDLRNTLKERGSNLLLRR----GKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYNPI 123

Query: 125 KRLQHRVICKSFDDSV---------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
                    +                    S L      ++     +  +       D  
Sbjct: 124 LWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVRSTFQMPDRL 183

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQ 233
                 +      T  +  +               GE  AL  L  +  E      Y + 
Sbjct: 184 KPLPSGLEEGSVPTHQDFDQQDPLTDPRSAFPCCGGETQALQRLHHYFWETNLVASYKDT 243

Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+    I  +++ +P+L++G +SPR  + ++++   +         +  + EL+WR+++R
Sbjct: 244 RNGLIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERTANQ--STYWVIFELLWRDYFR 301

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y         +   +   W KD  L  AWK+G TG P +DA MR+L   G+M NR
Sbjct: 302 FVALKYGRRIFFLRGLQDKDV-PWKKDPKLFDAWKEGRTGVPFVDANMRELAMTGFMSNR 360

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R FN  
Sbjct: 361 GRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 419

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
            QG  +D  G +IR W+PEL  +     H P +            L   YP PIV
Sbjct: 420 KQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGETYPYPIV 474


>gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           infantum]
 gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5]
          Length = 541

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 124/513 (24%), Positives = 199/513 (38%), Gaps = 44/513 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +      V+  F   P Q               F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +D ++ +     + +V     +         R   
Sbjct: 87  ESLIDLDGA-AQLNGGLVCLRGSD-EDCLQRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSL 177
                Q  V      D  L P   ++ ++ Q Y V+TPF         +       +   
Sbjct: 145 AYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHARRVAVPLPVNVS 204

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            V ++ ++ P               A  P           + R  C E++  Y + RD  
Sbjct: 205 KVQSMLVSRPKKCMGHHLVDPALVYAHMPQVQDHGGRTEGLKRLACVERLKQYADARDDI 264

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288
           A   TS LSP++  G +S R+ W+   +         +   +     ++           
Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 +  +          PF P  +  +W+  +   +A+K+G TG P++DAA+R L  
Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW HNR R++ ++F VK L +DWR  E +F +  +D D A+NNGGW W++  G D+ PY
Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANNNGGWLWSSGQGADAQPY 444

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450
           FR FN   Q +RFDP   FI  W+PEL  VP   +H    +  +                
Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCARARGKATATHSRKRSGQ 504

Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               +   +YP PIVD K A    + ++    K
Sbjct: 505 GNAEEYPTSYPAPIVDIKAATKAVVEEFKKYSK 537


>gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM
           44702]
          Length = 492

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 150/509 (29%), Positives = 226/509 (44%), Gaps = 56/509 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSH 59
           M   +AM+  LVW R+DLR+ DN AL  A      +VIAV I             A  S 
Sbjct: 1   MTDRSAMT--LVWFRDDLRLADNAALEWAAQ--GGEVIAVVIDEDAAATGVRPRGAAASW 56

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +   SL Q+   L + G+   +       D ++ + +      V  + +NR+YE      
Sbjct: 57  WRERSLSQLAGRLLEHGVPMLHL----AGDPVDIMTALPGLLAVDAVVWNRRYEEPLRFV 112

Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQ 171
           D  +++ LQ       SF   +L  P  +     + Y+V+TP+ +A        +  LV+
Sbjct: 113 DSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRAATPVAEDAVAQLVE 172

Query: 172 ADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-------LRK 221
           A  +       P   L     P   P        ++   +  GE+             R+
Sbjct: 173 AAAQVPADLRGPEKDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLAAFVTGDRR 232

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
                   Y + RDIP    T+ LSP+L  G +SP + W  +    VD    P +   + 
Sbjct: 233 TTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDVPAADGSAL 291

Query: 282 LNELIWREFYRHLMAFYPS---VCMGKPFIPWTEKIEWNKDSHLLQ------------AW 326
            +EL+WR+F    +   P     C+ + F  +  + + +    +              AW
Sbjct: 292 HSELLWRDFAWQRLYHRPDLASRCVREQFTQFPWRWDNSLPGDVKHLGDATALAQDLSAW 351

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG P++DA MR+L T GWMHNR+RM+  SFL K+LL DWR GE++F   L+D D A
Sbjct: 352 RSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWDTLVDADPA 411

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN   WQW A  G+D+ PYFRIFNP  Q K+FDP+  ++  W+PE   V  +  HA    
Sbjct: 412 SNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPEAAHAGP-- 467

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
                    YP P+VD +++    L  Y 
Sbjct: 468 ---------YPPPMVDLRESRQRALAAYE 487


>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
 gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
          Length = 539

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 111/514 (21%), Positives = 186/514 (36%), Gaps = 48/514 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN A+ AA  N D  V  I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + + L +    +G +            +           + K+   +  E     RD+ +
Sbjct: 67  IDRQLQEATEGRGGLLICE-----GQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +   +   I      S  L     +          T         ++    R +  P   
Sbjct: 122 KSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNFE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE------------------ 225
               V  S   R     F+           +                             
Sbjct: 182 GVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKVE 241

Query: 226 -----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274
                + YY   Q     +     +S +L  G LS R+ +  + + F ++          
Sbjct: 242 QHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGVQ 301

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            SG      +LIWRE++  +    P     +             D+  LQ W+ G TGFP
Sbjct: 302 MSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWAKPDAEQLQRWRLGQTGFP 361

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +ID+AMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G W 
Sbjct: 362 LIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNWM 421

Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
           W +S+  + +     +  P    KR DP G +I+ ++PEL +VP +YIH P     +   
Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEPWLMSAEEQK 481

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                + ++YP  I+D   A    +    A +  
Sbjct: 482 RYECLIGVHYPDRIIDLSLASKRNMLAMKALRNS 515


>gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
 gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
          Length = 256

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 164/253 (64%), Positives = 191/253 (75%)

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL +   + L    SGAF W NELI
Sbjct: 1   MPHYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELI 60

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+HL+   P++C    F  WTEKI W  +     AW QG TGFPIIDAAMRQLN  
Sbjct: 61  WREFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQT 120

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYF
Sbjct: 121 GWMHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYF 180

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNPT QG++FDP G FIRHWLPEL +VP++YIH PH W  K +  L+YPLPIVDH KA
Sbjct: 181 RIFNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKA 240

Query: 467 CHHTLNQYYAAKK 479
               +  Y   KK
Sbjct: 241 RIRAIESYEKDKK 253


>gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 474

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 224/482 (46%), Gaps = 26/482 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASL 65
           MS +L   R DLRI DN  L+ A   ++   I +FI T +Q      +S     F+  SL
Sbjct: 1   MS-NLFIFRRDLRIIDNLGLHQALKETNT--IPIFIFTHQQVINNPYLSDNSFGFLIESL 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + K +S+      Y   +     I+ +        + K++ N+ +     +RD  L +
Sbjct: 58  EDLSKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLE 117

Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---LIQNLVQADLRSLPVPA 181
              +  +I    +D  LLP GSI  +    YK++TPF      L +N+ +    +     
Sbjct: 118 FGKKENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFN 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +  SNI       +   +    +       +L+    +    Y  +R+    + 
Sbjct: 178 KIKFINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQKEYSIKRNNLMYE- 236

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LS Y+  G +S R+ + + K+   D          +  ++L WREFY ++  +Y  V
Sbjct: 237 TTHLSAYIKFGCISIREVFYKFKKYLKD--------NNTLYSQLFWREFYTYITHYYQYV 288

Query: 302 CMGK-------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             G+        F       +W+ +   L  WK+G TGFPI+DA +++L T G+MHNR R
Sbjct: 289 LQGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSR 348

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++T++FL+K  L+DWR GE+YF  +L D D A NNGGWQ+    G  +  YFRI +P  Q
Sbjct: 349 LLTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQ 407

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQ 473
             RFD    +I+ WLP L ++  +++     +    DL+  NY  P+ D+KK    +L  
Sbjct: 408 ANRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKT 467

Query: 474 YY 475
           Y 
Sbjct: 468 YK 469


>gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
 gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
          Length = 478

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 217/483 (44%), Gaps = 27/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN AL  A   S+A + + +I      +    ++R + F+  SL ++ +
Sbjct: 7   LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFDQNYSQDFNANSR-AWFLGNSLQELSR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +    G         +  + +  +           + +N+  E  E+ RD  ++  L+  
Sbjct: 65  NWETLGSRMII----DEGNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKKF 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I        LL   S ++                +++ +Q       +  I     +  
Sbjct: 121 KIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNIGKLKDLEI 180

Query: 191 SNIPRFF---------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                                 ++    + P  P        + +   ++K+  Y   RD
Sbjct: 181 GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKPGEIAAEKLLDQFINQDKIGSYASSRD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            P   GTS LS  L  G +S R+ WN  L  +  +     K    +W  EL+WREFY+H 
Sbjct: 241 FPDQNGTSFLSASLRFGTISIRKVWNSTLFTDLKNKNNHNKISIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    +   W  +      W  G TG PIIDAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GEE FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FDP   +I+ W+PEL+ VP + I    +    +    NY   IV+H        + Y
Sbjct: 419 TKKFDPICKYIKFWIPELSKVPNKDI---LNGEISDLEKNNYYGAIVNHNTQQRLFKDLY 475

Query: 475 YAA 477
              
Sbjct: 476 AHI 478


>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
 gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
          Length = 542

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/520 (22%), Positives = 197/520 (37%), Gaps = 51/520 (9%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  +   L      +G +  +       +          Q R+ ++   +  E    
Sbjct: 61  LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164
            RD+ +    +   I      S               +PP +       +  +  P R  
Sbjct: 116 ERDENIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214
               L  A    L     R         +P  F+     +  +  I  +          +
Sbjct: 176 ADARLDDATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
               + +   E+ +Y   Q           +S +L  G LS R+ +  + + F ++    
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                  +G      +LIWRE++  +    P+    +             +  LLQ W+ 
Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQRWRL 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D + 
Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +Y+H P   
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEPWRM 475

Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +        + ++YP  I+D   A    +    + +  
Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 541

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62
           V L   R DLR+ DN  L A C+ +      V+  F   P Q               F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +D +  +     + +V     +         R   
Sbjct: 87  ESLVDLDGA-TQLNGGLVCLRGSD-EDCLRRIRDGGYEVKVLGFNEDYTPFALVRDRLLR 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180
                Q  V      D  L P   ++  + Q Y V+TPF            A    + V 
Sbjct: 145 DYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAKPLLVNVR 204

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIP 237
            ++      P             +    P  + +        R  C E++  Y + RD  
Sbjct: 205 KVQSMLVSQPKKCLEHHLVDPALLYTHMPQVQDHGGRTEGLKRLACVERLKQYADVRDDI 264

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288
           A   TS LSP++  G +S R+ W+   +         +   +     ++           
Sbjct: 265 AGDCTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 +  +          PF P  +  +W   +   +A+K+G TG P++DAA+R L  
Sbjct: 325 LNSFIGQKDIVKATQPKQNAPFQPSYDDYKWRWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNGGW W++  G D+ PY
Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADAQPY 444

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450
           FR FN   Q +RFDP   F+  W+PEL  VP   +H    +  +                
Sbjct: 445 FRTFNAFRQSERFDPDCKFVFQWVPELAKVPPSVVHHWEEYCARARDKATGTYSRKRGAQ 504

Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               +   +YP PIVD K A    + +Y    K
Sbjct: 505 GKAEEYPTSYPAPIVDIKAATKAVIEEYKKYGK 537


>gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine
           bacterium 580]
          Length = 478

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 181/482 (37%), Gaps = 28/482 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
             ++VWL+ DLR+TD+  LY A    D + + ++I  P          R   FI  SL  
Sbjct: 4   KTNIVWLKRDLRLTDHAPLYEATCR-DEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L+++           + ++ +       Q  +T +F + +  +          K++
Sbjct: 63  MEKILAKQSKQLSI----AYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKKI 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +    +  +                   +     +   +      +R            
Sbjct: 119 FNAKKIQWHEYQTNAV-------------IRGLNNRKTWEKQWNKVMREEIKTINLAEAN 165

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
           +   N P +    F+      P G       +  F + +   Y +    P    TS   L
Sbjct: 166 IISHNFPNYSIPKFRNDLNYQPGGCLPGQKEMHDFFETRGQDYFKFISKPDRSRTSCSRL 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY++ G LS R+ +  L + +       +    +  + L W   +         +    
Sbjct: 226 SPYIAYGNLSMREVYQTLLKSWNKTG--WRRSMAALSSRLHWHCHFIQKYESEIDIEDLP 283

Query: 306 PFIPWTEKIE--WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               + +      N +     AW  G TG+P+IDA+MR L   G+++ R+R +  SF   
Sbjct: 284 INRGYKDFPYKVINCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAMVVSFACH 343

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
             ++ W++  ++  +  LD +   +    Q  A  G   +   RI+NP+ Q +  DP   
Sbjct: 344 YFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPSKQLQDHDPDTK 401

Query: 424 FIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR W+ EL++   +YI   P    D    S N YP P  D  +   +  N  +  KK S
Sbjct: 402 FIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLLWQWKKSS 461

Query: 482 LL 483
           L+
Sbjct: 462 LV 463


>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
 gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
          Length = 576

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 214/476 (44%), Gaps = 40/476 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYAS 64
           +VW RNDLRI DN++L  A  +SD+ ++ V+   P  +            A ++ F+   
Sbjct: 86  IVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIEC 144

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++ +L ++G+              + L S         ++  ++    E+  ++L+ 
Sbjct: 145 LADLKNNLMKRGLNLFIRH----GKPEDILPSLARAFSAHTVYAQKETCSEELIVERLVS 200

Query: 125 KRLQ------------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           K LQ             +   +    S +     +  +A  +  VYT F K +I+  ++ 
Sbjct: 201 KALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCVIRGCLKI 260

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229
            +   P P +   G V   +         + I  M  +G + A          K      
Sbjct: 261 PVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFWKKDLLKI 320

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +     +++ SP+L+ G LSPR  +  +K    +         +  L ELIWR
Sbjct: 321 YKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENERQAND--STYWVLFELIWR 378

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   Y +       +   E+  W++D  L ++WK G TG+P+IDA M++L+T G+
Sbjct: 379 DYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMKELSTTGF 437

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R I  SFLV+D+ VDWR+G E+F + LLD D  SN G W + A  GND     R 
Sbjct: 438 MSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 496

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           F+   Q + +DP+G ++ +WLP+L  +     H P           +Y   IV  K
Sbjct: 497 FSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFP---------GKSYIEQIVPLK 543


>gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 491

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/480 (22%), Positives = 182/480 (37%), Gaps = 24/480 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +VW + DLR+TD+  LY A       V  +++A PE W Q     R+  F+  +L 
Sbjct: 1   MTVRVVWFKRDLRVTDHGPLYHAARQ--GPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ ++LS+ G    +      D  I  L+    +  V +L+ +++  +           +
Sbjct: 59  ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQW----CNRRNQ 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +      ++       P   +L  A    +    ++  + Q    +      +    L  
Sbjct: 111 IVREWCRRNGVLWREWPVCGVLRRATAAERWQAAWKDFMAQTRYPSPKSLPMLGTSPLKP 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P  I          +                   +   Y+        + +G S+LS
Sbjct: 171 EAWPETIGADPTPCV--LRQAGGRAAAAQELKSFLQTRGINYFRDTHYPATSFEGGSRLS 228

Query: 247 PYLSIGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS GV+S R+   +    L+                +L+ L  R  Y   M   P + 
Sbjct: 229 PYLSHGVISLREAVQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQQMEDEPGME 288

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +    E   D    +AWK G TGFP+IDAAM+ L   GW++ +LR +  SF  
Sbjct: 289 SINLHKSFNGLREHQFDEAKFEAWKNGETGFPLIDAAMKALINYGWINYQLRGLLMSFAA 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L + WR    +      D D A +    Q  A  G   +   +I+NP  +  R DP G
Sbjct: 349 NQLWLHWREPALHMARLSTDYDPAVHFPLTQQFA--GTTGMFEQKIYNPVTESHRLDPAG 406

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYA 476
            FIR     L  V   Y+HAP        +        +YP+PI++++ A      +  A
Sbjct: 407 KFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINNEDASLIAGQRLKA 466


>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
 gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
          Length = 542

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 114/520 (21%), Positives = 196/520 (37%), Gaps = 51/520 (9%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  +   L      +G +  +       +          Q R+ ++   +  E    
Sbjct: 61  LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQLRLHRICIEQDCEPIWN 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164
            RD+ +    +   I      S               +PP +       +  +  P R  
Sbjct: 116 ERDESIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214
               L  A    L     R          P  F+     +  +  I  +          +
Sbjct: 176 ADARLDDATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
               + +   E+ +Y   Q           +S +L  G LS R+ +  + + F ++    
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                  +G      +LIWRE++  +    P+    +             +  LLQ W+ 
Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQRWRL 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D + 
Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P   
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475

Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +        + ++YP  I+D   A    +    + +  
Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
          Length = 520

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 126/487 (25%), Positives = 198/487 (40%), Gaps = 32/487 (6%)

Query: 1   MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHG 52
           M     MS  V +   RNDLR  DN+ +  A  ++D  V+ ++   P  +      +   
Sbjct: 1   MIRILKMSNRVAICLFRNDLRYHDNEVIALAHKSADF-VLPLYCFDPRHFEGTHHYKFPK 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               ++ F+  S+   +++L ++G           +  ++   S     +VT +      
Sbjct: 60  TGIFRTQFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTG-LKVTLILQTEVT 118

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           +       +L +   + +    +   S L   G +      +   YT FRK + + L   
Sbjct: 119 KEETDVEKRLQKICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIR 178

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-----------LRK 221
              S+P     +                        P                       
Sbjct: 179 PEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSYL 238

Query: 222 FCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           +    V  Y E R+       +++ S +LS G LSPR+    L++   +L        + 
Sbjct: 239 WDTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWELEKY--ELQRTKNQSTYW 296

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              EL+WR++++ +   Y         +    + +W KD  L +AW+ G TG P +DA M
Sbjct: 297 VRFELLWRDYFKFVSMKYGDRIFYPNGMKGRRQ-QWKKDMELFKAWQMGKTGVPFVDANM 355

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWM NR R   ASFLVKDLL+DWR+G E+F S LLD D+ SN G W + A  GN
Sbjct: 356 RELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWNYVAGIGN 415

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
           D     R FN   Q   +D +G +IR W+PEL  +P   IH+P           K  L  
Sbjct: 416 DPRE-NRKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSPWMLSSGALSAAKIRLGD 474

Query: 455 NYPLPIV 461
           NYP P+V
Sbjct: 475 NYPNPVV 481


>gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 493

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 169/485 (34%), Gaps = 46/485 (9%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS   LVW + DLR+ D+ AL+AA     A   A+F+  PE        A+   F    +
Sbjct: 1   MSTLALVWFKRDLRVQDHAALHAAAQCDAAL--ALFVMEPEWIASPECDAQHVQFAADCV 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q+SL+  G+           D  +  +    + R T LF + +              
Sbjct: 59  SALQESLAGLGLRLLVR----VGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDKRVA 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                      +         + + A    +          Q  + A    +P      +
Sbjct: 115 HWCREQGVIWQEWPQNGVVRRLRDRAGWAARW---------QRRMDAPQLPVPQALRDAS 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TS 243
            P+   + P   D    A  PM   G   AL  L  F   +   Y      P       S
Sbjct: 166 KPLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMA 296
           +LS +L+ G LS RQ     ++    L                 +   L W   +   + 
Sbjct: 226 RLSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFMQKLE 285

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +        +    E   +    +AW  G TGFP++DA MR LN  GW++ R+R +
Sbjct: 286 DEPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAM 345

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L + WR    +   Q LD +   +    Q    +G   +   R+++P  Q  
Sbjct: 346 LVSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQA 403

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DPQG FIR W+PE                        YP PIV+ + A     ++ YA
Sbjct: 404 DHDPQGEFIRQWVPE------------WGTSA-------YPPPIVNERSAVKQAKDRIYA 444

Query: 477 AKKQS 481
            ++  
Sbjct: 445 IRQSP 449


>gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 436

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 203/466 (43%), Gaps = 36/466 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
              + DLR+ DNKAL+ A  NS +K+I +F+      ++     ++  F+   L  + K 
Sbjct: 5   YLFKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFVVDVLKNISKK 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                I        +     E L+    + +   L+  + +      RD+ +EK  +   
Sbjct: 64  -----INLYVFHGEDD----EILEFLFSKYKPDALYTAQSFSWQGEERDRNIEKVCRKCN 114

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           +         L     + +       Y  +   +     + ++         L   V   
Sbjct: 115 VKFHAVFDNYLADFRKIPYTKVFTPFYKKWLGYVESQEYEINIE-------ELKRKVVAL 167

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           ++        +  +           +   +        Y EQRD P +  +S+LSPY+  
Sbjct: 168 DLDTIDTILVKFPELNQKNEVFTYDYGFERLRSYDFAKYQEQRDFPGLDMSSRLSPYIRF 227

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           GVLS R+  N   +   +           ++ +L WREF+ H+   +      + F+   
Sbjct: 228 GVLSIRKIHNIASKVSPE-----------FVRQLAWREFWYHIKYNFSEFNKLE-FLEKR 275

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
             + W  D  L + +    TG+PI+DA +RQL    WMHNR+R+I A+FLVKDLL+DWRI
Sbjct: 276 RNVRWRYDEKLFEKFVNAQTGYPIVDAGIRQLKQENWMHNRVRLIVANFLVKDLLIDWRI 335

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE++F   LLD D   N G WQW+AS G D  P  RIFNP IQ ++FDP   +I+ ++PE
Sbjct: 336 GEKFFREYLLDYDEVLNVGNWQWSASVGPDPKP-LRIFNPMIQSEKFDPNCEYIKKYIPE 394

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           L N     IH P  +       LNY  PIV+H +A   T   Y   
Sbjct: 395 LKNEENYKIHNPLEY------KLNYYEPIVNHYEAVQITKRLYKGM 434


>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
          Length = 525

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 203/474 (42%), Gaps = 27/474 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIY 62
             L  LRNDLR  DN+ L+ A  +   +++ ++   P  + Q            +  F+ 
Sbjct: 8   TALCLLRNDLRCHDNEVLHWA-QSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFRLRFLL 66

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++++L +KG      +    D   + +        V+        E  +V +  +
Sbjct: 67  ESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVS-FHEEATKEELDVEKALI 125

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                    +   +  ++         H  Q+  VYT FRKA+        +  +     
Sbjct: 126 RVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPVLKMEGQMK 185

Query: 183 RLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQR 234
            L   +   NIP   D+             +   GE  AL  L+ +  E      Y E R
Sbjct: 186 SLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQHYFWETNLVASYKETR 245

Query: 235 DIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +       +++ +P+L++G +SPR  ++++++   +         +  L EL WR+++R 
Sbjct: 246 NGLIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTANQ--STYWVLFELAWRDYFRF 303

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   Y         +   +   W KD  L  AWK+G TG P +DA MR+L T G+M NR 
Sbjct: 304 VALKYGRKIFFPRGLQDKDI-SWKKDPKLFDAWKEGRTGVPFVDANMRELATTGFMSNRG 362

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   ASFL KDL +DWR+G E+F S L+D D+ SN G W ++A  GND     R FN   
Sbjct: 363 RQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMIK 421

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
           Q   +D  G + R W+PEL  +    +H P +            L  +YP+PI+
Sbjct: 422 QALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQAGVSLGSSYPVPII 475


>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
 gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
          Length = 577

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/492 (25%), Positives = 204/492 (41%), Gaps = 56/492 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61
           V +VW RNDLR+ DN+AL  A   S+A V+ V+   P         +      A ++ F+
Sbjct: 79  VAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRAQFL 137

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +++ L +KG+              E L S         ++ +++    E+  ++
Sbjct: 138 IECLGDLKQILRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 193

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L+ K L+   I +        P    L         +       + NL   D+ +    A
Sbjct: 194 LVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNL--PDVYTQFRKA 251

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH------------------------ 217
           +     V           P  +       G                              
Sbjct: 252 VESKSSVRNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGLSVTKSEKGMHFIGGENAA 311

Query: 218 ----ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
                   + K+++  Y   R+ +     +++ SP+L+ G LSPR     +K      + 
Sbjct: 312 LGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVA 371

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                 +  L ELIWR+++R L A Y +        P     +W++D  L ++W+ G TG
Sbjct: 372 ND--STYWVLFELIWRDYFRFLSAKYGNTIFH-LGGPRKVVSKWSQDQALFESWRDGRTG 428

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA MR+L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G W
Sbjct: 429 YPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNW 488

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
            + A  GND     R F+   Q K +DP+G ++ +WLPEL ++  +          +N  
Sbjct: 489 TYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKE---------RRNFP 538

Query: 453 SLNYPLPIVDHK 464
             +Y   IV  K
Sbjct: 539 GASYIRQIVQLK 550


>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
 gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
          Length = 492

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 190/490 (38%), Gaps = 34/490 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+ DN +L A+  N  +    +++   E  R   ISA + +F+   L  +
Sbjct: 3   TSVHWFRKDLRLHDNPSLLASLDNC-STFFPIYVLDMESARASKISANRWNFLCECLEAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L   G      +      +I+ L     +  V +L + R+ E    +RD +++   +
Sbjct: 62  DRQLRVLGSRLFVIR----GRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAE 117

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +     ++ L      +L        +         + L         V        
Sbjct: 118 NANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGAC 177

Query: 188 VTPSNIPRFFDYPFQAIDPM-------------FPIGEQNALHILRKFCKEKVYYYVEQR 234
           +TP  +     Y    +                +  GE  A+  L    ++K +      
Sbjct: 178 ITPVGLDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKKKFIKPPLS 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
               +     LSPY+  G LSP    +RL  E+            +    L+WREF+   
Sbjct: 238 ADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQ--RTMGSKPPETLYTNLLWREFFFAT 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +  P         P   +I W +    L  WKQG TGFP IDA MRQL   GW+H+  R
Sbjct: 296 ASTNPDH-HRMMGNPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLAR 354

Query: 355 MITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNP 411
                FL +    V W  G + F    LD + + N G W W + +   + +VP+   + P
Sbjct: 355 QAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVHGAVPW---YCP 411

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465
              GK+ DP G +IR ++PEL  +PT+++H P              +  +YP P+V+H +
Sbjct: 412 VEVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQPMVNHLE 471

Query: 466 ACHHTLNQYY 475
                + +  
Sbjct: 472 RRVVCVQKMQ 481


>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia
           guttata]
          Length = 540

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/464 (22%), Positives = 179/464 (38%), Gaps = 30/464 (6%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           ++I  P       +   +  F+  SL  +  SL +        +        +       
Sbjct: 1   IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFK 56

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVY 158
           +  VT+L +    E     RD  + K  +   +    ++S        I+        + 
Sbjct: 57  EWGVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLT 116

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------M 207
               +A+I  +         V + ++              Y   +++            +
Sbjct: 117 YKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV 176

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +  GE  AL  L K  + K +    +R            + LSPYL  G LS R  + RL
Sbjct: 177 WQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL 236

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E +  +         S   +L+WREF+       P     +   P   +I W+++   L
Sbjct: 237 WELYKKVKRNSTPPL-SLYGQLLWREFFYTAATNNPKFDRME-GNPICIQIPWDRNPEAL 294

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G   F   LLD
Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D + N G W W + +      +F  + P   G+R DP G +++ +LP+L   P++YI+ 
Sbjct: 355 ADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYE 413

Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 414 PWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 457


>gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 526

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/489 (23%), Positives = 191/489 (39%), Gaps = 30/489 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64
           + W+RNDLR+ DN+ L  AC +  + V+ ++   P+ ++             ++  I  +
Sbjct: 11  IYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTGIHRAKLILDA 69

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ SL +KG      +    +   + +        VT + + ++    E   +  + 
Sbjct: 70  VSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITKEETDVEASVF 129

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K    + I         L     +   +          +  ++      L  +P     L
Sbjct: 130 KVCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKLNPIPDKISSL 189

Query: 185 TGPVTP------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                              +   +               +         +    +  Y E
Sbjct: 190 PNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEVDAIKRLNEYLWGNNAILTYKE 249

Query: 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+       +++ SP+L++G LSPR  ++++K+      IK     +  + ELIWR+++
Sbjct: 250 TRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTYWVVFELIWRDYF 309

Query: 292 RHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + +       V              W +D +L   W  G TG P +DA M++L   GWM 
Sbjct: 310 KFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDANMKELLATGWMS 369

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFLVKDL +DWR+G E+F S L+D D+ SN G W + A  GND     R FN
Sbjct: 370 NRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDVCSNYGNWNYIAGIGNDPR-SNRKFN 428

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
              Q   +D +G ++R WLP L  +     H P             DL  NYP PI+   
Sbjct: 429 VIKQAADYDEEGDYVRTWLPVLKKL--GICHTPWRLSASELNAGGVDLGKNYPHPIIVAP 486

Query: 465 KACHHTLNQ 473
           +   H L  
Sbjct: 487 EWAKHALKM 495


>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
 gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
           Full=Blue light photoreceptor
 gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
 gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
 gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
 gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
 gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
 gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
          Length = 542

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/520 (21%), Positives = 198/520 (38%), Gaps = 51/520 (9%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  +   L      +G +  +       +          Q R+ ++   +  E    
Sbjct: 61  LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164
            RD+ +    +   I      S               +PP +       +  +  P R  
Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214
               L  A    L     R          P  F+     +  +  I  +          +
Sbjct: 176 ADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
               + +   E+ +Y   Q           +S +L  G LS R+ +  + + F ++    
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                  +G      +LIWRE++  +    P+    +             + +LLQ+W+ 
Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRL 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D + 
Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P   
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475

Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +        + ++YP  I+D   A    +    + +  
Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
          Length = 542

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 114/520 (21%), Positives = 194/520 (37%), Gaps = 51/520 (9%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  +   L      +G +  +       +          Q R+ ++   +  E    
Sbjct: 61  LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164
            RD+ +    +   I      S               +PP +       +  +  P R  
Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--- 221
               L  A    L     R          P  F+     +  +  I  +           
Sbjct: 176 ADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLD 235

Query: 222 -------FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
                     E+ +Y   Q           +S +L  G LS R+ +  + + F ++    
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                  +G      +LIWRE++  +    P+    +             +  LLQ+W+ 
Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQSWRL 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D + 
Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P   
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475

Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +        + ++YP  I+D   A    +    + +  
Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 639

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 112/548 (20%), Positives = 174/548 (31%), Gaps = 84/548 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  +F   P    +      +  F+      + K
Sbjct: 7   IYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             +VT L + +  +     RD ++ +  +
Sbjct: 67  SITKLNPKSKLLLLR----EAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVVTRAAK 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +               I+        +     +     L +          +   G 
Sbjct: 123 EAGVEVIVRTGRTLWDSDQIVEKHGGKPTMSITQLQQAGARLGEVRKPIPAPKHLPDPGE 182

Query: 188 VTPSNIPRFFDYPFQAIDPMFP---------IGEQNALHILRKFCKEKVYYYVEQRD--- 235
           +                               G      I               R    
Sbjct: 183 MPVDFEQEQPKTKPDFNSEQRTEKDQTYTKIAGPNGDFAIETMEELGFPSATTPHRGGET 242

Query: 236 ---------------------------IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                                          Q T+ LSP+L  G LS R+ + R++E   
Sbjct: 243 LALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTLLSPFLHFGALSVREFYWRVQEVVD 302

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
                  +   S + +L++R+ Y    A    V M     P    I W+  S        
Sbjct: 303 AYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVKNPHCRFIPWHLPSKRDPKTGL 362

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
                           + WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 363 VTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLGRHAVACFLTRGGCY 422

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW + T   S  YFR ++P   G+++D QG FIR
Sbjct: 423 IDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKQGDFIR 481

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471
            ++PEL N+  +YI+ P      +                    YP P+ D  K     L
Sbjct: 482 RYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNDVQEGTYPKPMFDFSKRRDACL 541

Query: 472 NQYYAAKK 479
                A K
Sbjct: 542 AAMKTAYK 549


>gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 493

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 171/481 (35%), Gaps = 45/481 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW + DLR TD+  L AA     A  + +++   E         +   FI  SLL+++
Sbjct: 5   ALVWFKRDLRCTDHAPLAAAARCRSA--VGLYVLEDEWLGAPEWDPQHWEFIRQSLLELR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L+ +G+     +          L         T+L  + +                  
Sbjct: 63  DNLAARGMPLLLRR----GAMPLVLAQLWRDYPFTELLSHEETGSAWTYARDRRVAA--- 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 +     +         +              +  +     +        T P+ 
Sbjct: 116 ------WCRERGIAWRQWPQFGVVRPLAQRDGWAEAWERFMARPPLAAVGQLPGTTTPLD 169

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
             +IP        A  P+ P GE  A   L  F  E+   Y+     P  A +G S+LS 
Sbjct: 170 GGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHTLSSPLLAERGCSRLSA 229

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPS 300
           +L+ G +S RQ   R ++   +L  +              +L+ L W   +   +   P+
Sbjct: 230 HLAYGTVSMRQVVQRTRQRLRELRKEGSAEAGERARHLRGFLSRLHWHCHFIQKLEDEPA 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                    +    E +       AW +G TGFP +DA MR L   GW++ R+R +  SF
Sbjct: 290 SEFHNFSRSYDGLREDDWSEERFLAWAEGRTGFPFVDACMRCLRATGWINFRMRAMLVSF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L + WR    +   Q LD +   +    Q    +G   +   RI++P  Q    DP
Sbjct: 350 ASYHLWLHWRGTGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPNKQWADQDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +G F+R WLPE                       +YP PIVD ++A      + +A ++Q
Sbjct: 408 RGEFVRRWLPE------------WGSP-------DYPPPIVDEQRAARIAKERIWARRRQ 448

Query: 481 S 481
            
Sbjct: 449 P 449


>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 120/488 (24%), Positives = 206/488 (42%), Gaps = 50/488 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61
           V +VW R+DLR+ DN+AL  A   S A V+ V+   P        ++      A ++ F+
Sbjct: 97  VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  ++++L ++G+              + L           ++ +++    E+  + 
Sbjct: 156 IECLGDLKQNLQKRGLDLLVRH----GKPEDILPEIAKAVSAHTVYAHKETCSEELLVEH 211

Query: 122 LLEKRLQHRVICKS-------------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           L+ + L+  +I +                 + +     +      +  VYT FRKA+   
Sbjct: 212 LVRRGLEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESK 271

Query: 169 LVQA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------LH 217
                         P P+  L       +IP               +             
Sbjct: 272 SSVRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGMRFVGGESAALGRV 331

Query: 218 ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
               +  +++  Y E R+ +     +++ SP+L+ G LSPR     ++      +     
Sbjct: 332 HEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRVAND-- 389

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
             +  L ELIWR+++R L   Y +        P     +W++D  L ++WK G TG+P+I
Sbjct: 390 STYWVLFELIWRDYFRFLSEKYGNSIFH-LGGPRKVASKWSQDQALFESWKDGRTGYPLI 448

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G W + A
Sbjct: 449 DANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGA 508

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
             GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P           +Y
Sbjct: 509 GVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSLAKERRNFP---------GASY 558

Query: 457 PLPIVDHK 464
              +V  K
Sbjct: 559 IKQVVPLK 566


>gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
 gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
          Length = 475

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 138/494 (27%), Positives = 208/494 (42%), Gaps = 53/494 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59
           M+  L+WLR+DLR+ D+ AL AAC  +D  V+A++I           +     + A    
Sbjct: 1   MTT-LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + + SL Q+   L+  GI   +       D+   +       + T + + R+Y     R 
Sbjct: 60  WYHRSLQQLAPRLADLGIPLVF----TRGDAANVMRRVVDALQPTVVHWTRRYAPAACRL 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  +++ L  R    S   S+L  P  +       Y+V+TPF  A+    + + L     
Sbjct: 116 DAAIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLTSLLPEPSP 175

Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
              R               L        +     +  + +   +  GE  A   L     
Sbjct: 176 IGERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAIDS 235

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y   +        TS++SP L  G LSPRQ     +                W  +
Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAARTSTASGEDIVA-----WTRQ 290

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF  HL+          P  P   +  +  D HL +AW+QG TG  ++DA MRQL 
Sbjct: 291 LYWREFSWHLLHH-REHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLW 349

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNR+RM+ AS L K++L  W+ GE++F   L+D D A+N   WQW A  G D+ P
Sbjct: 350 QTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAP 409

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           YFRIFNP +Q  RFDP+  ++R W+PE               L +  +S      +VD  
Sbjct: 410 YFRIFNPDLQRTRFDPRSRYVRRWIPE--------------GLARPVVS------VVDLA 449

Query: 465 KACHHTLNQYYAAK 478
           ++    L  Y   +
Sbjct: 450 ESRREALAAYEQVR 463


>gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 541

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 125/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +      V+  F   P Q               F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +D ++ +     + +V     +         R   
Sbjct: 87  ESLIDLDGA-AQLNGGLVCLRGSD-EDCLQRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPV 179
                Q  V      D  L P   ++ ++ Q Y V+TPF         + V   L     
Sbjct: 145 AYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHAHRVAVPLLVNVS 204

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIP 237
               +        +      P      M  + +         R  C E++  Y + RD  
Sbjct: 205 KVQSMLVSQPKKRMEHHLVDPALVYAHMPQVQDHGGRTEGLKRLACVERLKQYADARDDI 264

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288
           A   TS LSP++  G +S R+ W+             +   +     ++           
Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVRALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 +  +          PF P  +  +W+  +   +A+K+G TG P++DAA+R L  
Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW HNR R++ ++F VK L +DWR  E +F +  +D D A+NNGGW W++  G D+ PY
Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANNNGGWLWSSGQGADAQPY 444

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450
           FR FN   Q +RFDP   FI  W+PEL  VP   +H    +  +                
Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCARARGKATVTHSRKRNGQ 504

Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               + S +YP PIVD K A    + ++    K
Sbjct: 505 GNAEEYSTSYPAPIVDIKAATKAVVEEFKKYGK 537


>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 610

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 108/508 (21%), Positives = 187/508 (36%), Gaps = 65/508 (12%)

Query: 9   VHLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------------Q 50
           V L W R+ DLR+ DN AL  +   +++ V  VF      +                  Q
Sbjct: 51  VVLHWFRHGDLRLLDNPALIHSSKTAESCV-PVFCFDDSVYGNDNRTPDTRAPHSNDRGQ 109

Query: 51  HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------- 103
                R++ F+  S+  +++SL  +G               +                  
Sbjct: 110 LKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAH----GKPAQVFQRLVDAWPAVPAADTA 165

Query: 104 ----------TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
                      +    R+          +L +R     + + +  ++           L 
Sbjct: 166 APNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPFATDLA 225

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP-----------FQ 202
                    +  ++   Q          + L      +        P            Q
Sbjct: 226 NMPDTFTPFRNKVEKNCQIGTPLPVPKQLSLPENFPSALKQGLEYLPTLKELGYTDAQIQ 285

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261
            ++     G  + +   +    + +  Y E R+ +     +++ SP+L+ G +SPR    
Sbjct: 286 QVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLAHGNVSPRYVAA 345

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--IPWTEKIEWNKD 319
           + ++   + +       +  + EL+WR+F +     +                   W+  
Sbjct: 346 QCRKYEEERVE--NKSTYWVVFELLWRDFCKFFATKHGDAIFYPYGTTERTDRHKPWSTF 403

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              LQAW++G TG+P++DA MR+L   G+M NR R   ASFL  +L  DWR G ++F S 
Sbjct: 404 GRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFLAINLNHDWRCGGDFFESH 463

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D+ SN   W   A+ G       R FN + Q K +D  G ++RHWLPEL  VP ++
Sbjct: 464 LLDYDVYSNWVNW--CAAAGMTGGRLNR-FNISKQSKDYDQHGDYVRHWLPELAKVPNEF 520

Query: 440 IHAPHSWL------DKNDLSLNYPLPIV 461
           +H P           +  L ++YP PIV
Sbjct: 521 VHEPWKMTSFQQMEYECKLGVDYPNPIV 548


>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 454

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 141/483 (29%), Positives = 214/483 (44%), Gaps = 50/483 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +VW R D               +       +  VI V+I   +  R   +      +++ 
Sbjct: 6   IVWFRRD---------LRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHH 56

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL ++  SL + G      +        E L +   +     +   + YE      +K  
Sbjct: 57  SLAELDASLRKLGSRLILRR----GKCHEELAAVRREAGARVVHALQHYEPWWRNAEK-- 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              +   +     + + L P GS+     + YK+YTPF  AL++ +  A     P    R
Sbjct: 111 --AVAKTIRLVLHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPE---R 165

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-------KFCKEKVYYYVEQRDI 236
           L  P          D+      P +  G +              +   ++V  Y E R++
Sbjct: 166 LEAPAVWPTSDALDDWKLLPTAPDWAGGFRETWTPGENGAEERLQDFADRVARYGETRNL 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+I+GTS+LSP+L  G +SP   W+R+                 +L EL WR++ ++++ 
Sbjct: 226 PSIEGTSRLSPHLHFGEISPATIWHRVVNAGG--------SVDVFLGELGWRDYAQNVIV 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P            +++EW  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 278 QFPDYGSRNA-REAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMI 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK LL+DWR GE +F   L+D D ASN   WQW A TG DS  + RI  P  Q  
Sbjct: 337 AASFLVKHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSP 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G +IR W+PEL ++  + IH P            YP  IV H +A    L  +  
Sbjct: 397 KFDAAG-YIRQWVPELAHLSDRDIHDP------AVPPRGYPAKIVSHSEARARALAAHDR 449

Query: 477 AKK 479
            K+
Sbjct: 450 MKQ 452


>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 656

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 111/530 (20%), Positives = 174/530 (32%), Gaps = 69/530 (13%)

Query: 11  LVWLRNDLRITDNKALYAAC---HNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           LVW R DLR+ DN A+ AA       + K+       I ++I    + +       +  F
Sbjct: 92  LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIV--HRPKIMLCGVNRFQF 149

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS------------------------ 96
           +  S+  +  +L+ +G      +          L +                        
Sbjct: 150 LLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAASEPFAIDRDNRAV 209

Query: 97  -YCLQQRVTKLFYNRQYEIN-------EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
               Q  V     +     +                      +  +      L  P  + 
Sbjct: 210 ALARQLGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALAMQPKPPKPLPTPEKVP 269

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                  ++Y          L                  VT         +PF       
Sbjct: 270 APVYLPSELYQQVIDYWQNRL--KPDSIAGPEQQFTLPEVTDFGFVAPERHPFIYGGEQI 327

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
            +G             +                T+ LSPYL  G +SPR   + ++    
Sbjct: 328 ALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHVRGIQE 387

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHL---------------MAFYPSVCMGKPFIPWTEK 313
                  +   S   +L+WREF+                             P       
Sbjct: 388 HHAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEESPTCLQIDWRWHTIPEREEDMT 447

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
            +        QAW  G TGFP IDA M QL   GWMH+  R   A FL + DL + W  G
Sbjct: 448 DDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRG 507

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            E F  +L+D D + N G W W +++   S  YFR+++P+  GK++DP+G FIR ++P L
Sbjct: 508 LEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWDPEGLFIRKYVPAL 566

Query: 433 NNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + +P +YI+ P              +  +YP PIVDHK A   ++     
Sbjct: 567 SKMPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRSMAGMKK 616


>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
 gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
          Length = 542

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 113/514 (21%), Positives = 192/514 (37%), Gaps = 48/514 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D  V  I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L +    +G +  +       +          Q R+ +L   +  E     RD+ +
Sbjct: 67  IDDQLQEATDGRGRLLVFE-----GEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETI 121

Query: 124 EKRLQH-------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
               +                     + +  +PP +       +  +  P R      L 
Sbjct: 122 RALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI----------LR 220
            A    L     R          P  F+     +  +  I  +               + 
Sbjct: 182 DATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVE 241

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274
           +   E+ +Y   Q           +S +L  G LS R+ +  + + F ++          
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            +G      +LIWRE++  +    P+    +                LLQ W+ G TGFP
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRWRLGQTGFP 361

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W 
Sbjct: 362 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWM 421

Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
           W +S+  + +     +  P    KR DP GT+I+ ++PEL  VP +++H P     +   
Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWRMSAEQQE 481

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                + ++YP  I+D   A    +    A +  
Sbjct: 482 QYECLIGVHYPERIIDLTMAVQRNMLAMKALRNS 515


>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
 gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
          Length = 542

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 114/520 (21%), Positives = 195/520 (37%), Gaps = 51/520 (9%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  +   L      +G +  +       +          Q R+ ++   +  E    
Sbjct: 61  LDSLQDIDDQLQAATDGRGRLLVFE-----GEPANIFRRLHEQVRLHRICIEQDCEPIWN 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164
            RD+ +    +   I      S               +PP +       +  +  P R  
Sbjct: 116 DRDESIRFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214
               L  A    L     R          P  F+     +  +  I  +          +
Sbjct: 176 ADARLEDATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLD 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
               + +   E+ +Y   Q           +S +L  G LS R+ +  + + F ++    
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                  +G      +LIWRE++  +    P+    +                LLQ W+ 
Sbjct: 296 CVRGVQMTGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRWRL 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D + 
Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP+GT+I+ ++PEL NVP +++H P   
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEPWRM 475

Query: 447 L------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +  + ++YP  I+D   A    +      +  
Sbjct: 476 SVEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKTLRNS 515


>gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
 gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
          Length = 479

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 217/474 (45%), Gaps = 24/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR+ DN A  AA   +   VI VFI          + A     +   L  + K
Sbjct: 12  IWWVRRDLRLADNPA-LAAAVAAGVPVIPVFIFETL---DEDLGAAPRFRLGLGLAHLAK 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q+G      +      + E L     +     + + R Y+   + RD  ++++L+ +
Sbjct: 68  ELEQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  KSF   +L  P ++      MY+VY+P+ K++       L+ A  R         +
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAHWPTS 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  A   L +F   +V  Y + RD PA+  TS L
Sbjct: 184 DDLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR+ W+   E           GA  +L E++WREF  HLM   P +    
Sbjct: 244 SENLAWGEISPRRMWHHGLEARRAGKS----GAEHFLKEIVWREFAYHLMFHTPHILTRN 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W       +D   + AW++G TG+  +DAAMR+L   G MHNR RMI ASFL K +
Sbjct: 300 WRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G + 
Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             W+ E    P Q     Y   P SW      +     P +D K+     L  Y
Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWELSPQDTRA--EPFLDLKEGRARALEAY 471


>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 110/512 (21%), Positives = 190/512 (37%), Gaps = 41/512 (8%)

Query: 10  HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL  A    +    +I +FI   E      +   +  F+  SL  
Sbjct: 6   NVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65

Query: 68  VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + K L   +G             +            R+ K+ + +  E    RRD  +  
Sbjct: 66  IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
                 I      S  L     +          T         ++    R +  P     
Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDWDGV 185

Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234
                       +  F+ +P      ++P        +     +++   ++++R      
Sbjct: 186 EFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEER 245

Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PKS 276
                       +   ++    +S +L  G LS R+ + R+ + F  + I+        +
Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQRVHMA 305

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
           G      +LIWRE++  +    P     +             +   LQ+W+ G TGFP+I
Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQLQSWRSGQTGFPLI 365

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DAAMRQL   GW+H+ LR   A+FL +      W  G   F+  LLD D +   G W W 
Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLDADWSVCAGNWMWV 425

Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
           +S+  + +     +  P    KR DP+G +IR ++PEL NVP +YIH P           
Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIHEPWRMPQELQENC 485

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  + + YP  IVD  K     ++     ++ 
Sbjct: 486 ECVIGVQYPERIVDLAKVSKRNVHAMQTLRQS 517


>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
          Length = 520

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 117/522 (22%), Positives = 199/522 (38%), Gaps = 78/522 (14%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------QHGISA 55
           M   LVW R DLR+ DN+AL  A      ++  V+   P ++                 +
Sbjct: 1   MKTALVWFRTDLRVRDNRALAVASEA--ERLRCVYCFDPREFGSREYGGKDSFRYEKTGS 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  S+  ++ SL ++G               E + S         + ++      
Sbjct: 59  HRTRFLRESVEALRISLRERGNELVVRH----GRPEEVVPSLAADIDADLVCFHALPTPE 114

Query: 116 EVRRDKLLEKRLQHRVIC-----KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           E   ++ + +RL           +S     L  P  +     ++   +T FR+ + ++  
Sbjct: 115 ERAVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDA 174

Query: 171 Q-----------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH-- 217
                         +      A +  G     +       P  A   + P          
Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDERRVLD 234

Query: 218 ------------ILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                           + ++++  Y E R+       +S+LSP+L+ G LSPR  +  ++
Sbjct: 235 FEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFETVQ 294

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---- 320
               + +       +  + EL+WR+F++   A + S    +  I        N +     
Sbjct: 295 RYERERVENE--STYWLVFELLWRDFFQFQFAKHGSQPFKRRGIRRRTIDWRNGEGDGDS 352

Query: 321 ----------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                              + WK+G TG P +DA MR+LN  G+M NR R   AS L  D
Sbjct: 353 GHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNVASVLAND 412

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR G  YF ++L+D D ASN G W + A  GNDS    R F+   Q + +DP   +
Sbjct: 413 LRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDSRN--RSFDVLWQAEHYDPDAAY 470

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
           +++WLPEL +VP +  H P     +        L   YP P+
Sbjct: 471 VKYWLPELRDVPDEKAHEPWRLTAEERDRYGVTLGEEYPEPL 512


>gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 473

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 145/466 (31%), Positives = 212/466 (45%), Gaps = 25/466 (5%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           +D+ AL AA       VI VFI          + A     +  SL  + + L   G    
Sbjct: 18  SDHTALGAAIARG-GPVIPVFILDDL---AEMLGAAPKWRLGLSLEDMSRRLEAMGSRLI 73

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDS 139
             +     D+ + L +   +     ++++R Y+   V RDK ++  L+   +  +S++  
Sbjct: 74  LRR----GDATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGH 129

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTGPVTPSNIPR 195
           ++  P ++   A   Y+VYTPF + + +        A           L+  +    +  
Sbjct: 130 LMFEPWTVETGAGGFYRVYTPFWRTVKERDVPEPEPAPSHIPAPKDWPLSDALEDWRLAA 189

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
             D       P   +GE+ A   L  F    +  Y   RD+PA  GTS LS  L++G +S
Sbjct: 190 AMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLALGEIS 249

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           PR+CW+       +       GA +WL EL+WREF  HL    P +        W     
Sbjct: 250 PRRCWHAGMRAMHEGK----PGAETWLKELVWREFAYHLAWHTPRIVNRNWREDWDAFPW 305

Query: 316 WNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
              + H    AWKQG TG P +DAAMR++   G MHNR RMI AS+L K LL  WRIG++
Sbjct: 306 NEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSHWRIGQK 365

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +F + L D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FDP+  ++  W+ E   
Sbjct: 366 WFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRWIAEGRR 425

Query: 435 VPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            PT    +     P  W    D    YP PIV  K      L  Y 
Sbjct: 426 NPTDTALSYFEAIPRKWGLSAD--DIYPEPIVSVKDGRAKALAAYE 469


>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
 gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
 gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
          Length = 525

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
           V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+ 
Sbjct: 41  VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 99

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E L S         +F +++    EV  ++L
Sbjct: 100 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 155

Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + L+   +    +    S +     +      +  VYT FRK++           +P+
Sbjct: 156 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 215

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
                       ++P        P +    M  +G ++A          K      Y E 
Sbjct: 216 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 275

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +++ SP+L+ G +SPR  +  ++    + +       +  L ELIWR+++R
Sbjct: 276 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 333

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G+M NR
Sbjct: 334 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 392

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+  
Sbjct: 393 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 451

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            Q + +DP+G ++  WL +L  +P +  H P   + 
Sbjct: 452 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 487


>gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding
           [Arabidopsis thaliana]
 gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
           Thaliana
 gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
 gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
          Length = 526

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
           V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+ 
Sbjct: 42  VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 100

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E L S         +F +++    EV  ++L
Sbjct: 101 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 156

Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + L+   +    +    S +     +      +  VYT FRK++           +P+
Sbjct: 157 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 216

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
                       ++P        P +    M  +G ++A          K      Y E 
Sbjct: 217 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 276

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +++ SP+L+ G +SPR  +  ++    + +       +  L ELIWR+++R
Sbjct: 277 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 334

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G+M NR
Sbjct: 335 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 393

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+  
Sbjct: 394 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 452

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            Q + +DP+G ++  WL +L  +P +  H P   + 
Sbjct: 453 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 488


>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/507 (22%), Positives = 187/507 (36%), Gaps = 59/507 (11%)

Query: 10  HLVWLRN-DLRITDNKALYA------------ACHNSDAKVIAVFIATPEQW-------- 48
           ++   R  DLR+ DN AL              A   +   ++ VF+    +         
Sbjct: 11  NIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAKSR 70

Query: 49  --RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106
                    R++ F   ++  ++ +L ++G        S          +          
Sbjct: 71  LGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSPESILARIATAAVESSGDKGA 130

Query: 107 FYNRQYEINEV---------------RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             N   +                   +  K   K     V   +  D   LP    +   
Sbjct: 131 LINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPETLPFDGGVFGV 190

Query: 152 LQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
             ++  +    +A  Q +  A+ +     +P +   G                A+   + 
Sbjct: 191 PDIFSPFRKDVEAKCQIVNDANNKCSLKYMPTLSDLGYNAEDIESVSSVDSRTALPVNYR 250

Query: 210 IGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE  AL  ++ +  +K     Y + R+ +     +++ +P+L++G +SPR         
Sbjct: 251 GGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIARECSRY 310

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHLL 323
               +       +  + EL+ R+ ++     +                 + +W  D   +
Sbjct: 311 EEQRV--QNKSTYWVVLELLIRDHFKFFAKKHGDKVFYLTGNIGKQRGSERKWGMDRKKI 368

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           QAW+ G TGFP++DA MR+L   G+M NR R   ASFL  DL +DWR G EYF   LLD 
Sbjct: 369 QAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLLDY 428

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D+ SN G W   ++ G       R FN   Q K +D  G ++R W PEL NVP ++IH+P
Sbjct: 429 DVHSNWGNW--CSAAGMTGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKNVPDKHIHSP 485

Query: 444 HSWLD--------KNDLSLNYPLPIVD 462
                        K     +YP PIVD
Sbjct: 486 WEMSGEMMEECGVKIGHGGDYPSPIVD 512


>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
 gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
          Length = 539

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/514 (21%), Positives = 188/514 (36%), Gaps = 48/514 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L +    +G +             +       + R+ K+   +  E     RD+  
Sbjct: 67  IDMQLQKATEGRGGLLMCQ-----GQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEAT 121

Query: 124 EKRLQHRVI-------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           +   +   I          +D   ++     +        ++T     L    +      
Sbjct: 122 KSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNFE 181

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--------KVY 228
               A                  P         +G    ++ +    +         KV 
Sbjct: 182 GVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKVE 241

Query: 229 YYVEQRDIPAIQG--------TSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274
            +  +R                  +S +L  G LS R+ +  + + F ++          
Sbjct: 242 QHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGVQ 301

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            +G      +LIWRE++  +    P     +             D+  LQ W+ G TGFP
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWSKPDADQLQRWRLGQTGFP 361

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +ID+AMRQL   GW+H+ LR   A+FL +  L  +W +G E+F+  LLD D +   G W 
Sbjct: 362 LIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDADWSVCAGNWM 421

Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
           W +S+  + +     +  P    KR DP G +I+ ++PEL NVP ++IH P     +   
Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEPWRMSSEQQE 481

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                L  +YP  I+D   A         A +  
Sbjct: 482 RYECLLGFHYPQRIIDLSLASKRNTMAMKALRNS 515


>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 539

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 113/510 (22%), Positives = 189/510 (37%), Gaps = 61/510 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M +       + W R  LR+ DN AL AA      +     +  VFI  P   R   +  
Sbjct: 1   MSSKQ---TAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDPGIIRWLRVGP 57

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +                         +     + +E       +  VT L +    E  
Sbjct: 58  NR---------------------LHVVR----GNPVEMFPELFREWNVTLLTFEHDIEPY 92

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            V+RD  + +  +   +    + S+ +     +          T  +   + ++ +    
Sbjct: 93  SVKRDATVRELARQAKVEVQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGP 152

Query: 176 SLPVPAIRLT-------------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
                 +                    P  +           +  FP GE  AL  L+ +
Sbjct: 153 IGVPDKVPAESVPEKDKRERKDGKCYDPPTLDELKVRQEDLGECKFPGGETEALRRLQDY 212

Query: 223 CKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
              K +    ++   +       T+ LSPY+  G LS R     LK+       K     
Sbjct: 213 MSRKSWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAELKKVL--AGQKHSQPP 270

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY    A  P+            ++ W  +   L AW  G TG+P IDA
Sbjct: 271 VSLVGQLMWREFYYCAAAAEPNFDKM-VGNSVCLQVPWETNPEHLAAWTHGRTGYPFIDA 329

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W ++
Sbjct: 330 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSA 389

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451
           +      +FR+++P   GK+ DP+G +I+ ++PEL   P   I+ P     +        
Sbjct: 390 SAFFHQ-FFRVYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCI 448

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +  +YP  IV H++     +++   A +++
Sbjct: 449 IGKDYPHRIVIHEEISKKNISRMSEAYRKN 478


>gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
          Length = 475

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 205/493 (41%), Gaps = 53/493 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59
           M+  L+WLR+DLR+ D+ AL AAC  +D  V+A++I           +     + A    
Sbjct: 1   MTT-LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + + SL Q+   L+  GI   + +     D+   +       + T + + R+Y     R 
Sbjct: 60  WYHRSLQQLAPRLADLGIPLVFAR----GDAANVMRQVVDALQPTVVHWTRRYAPAACRL 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  +++ L+ R    S   S+L  P  +       Y+V+TPF  A+    +   L     
Sbjct: 116 DAAIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSP 175

Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
              R               L        +     +  + +   +  GE  A   L     
Sbjct: 176 IGERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAIDS 235

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y   +        TS++SP L  G LSPRQ     +                W  +
Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAARTSTASGEDIVA-----WTRQ 290

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF  HL+          P  P   +  +  D HL +AW+QG TG  ++DA MRQL 
Sbjct: 291 LYWREFSWHLLHHR-EHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLW 349

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A  G D+ P
Sbjct: 350 QTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAP 409

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           YFRIFNP +Q  RFDP+  ++R W+PE    P                      P+VD  
Sbjct: 410 YFRIFNPDLQRTRFDPRSRYVRRWIPEGLARPVV--------------------PVVDLA 449

Query: 465 KACHHTLNQYYAA 477
           ++    L  Y   
Sbjct: 450 ESRREALAAYEQV 462


>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
 gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
          Length = 542

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/516 (22%), Positives = 194/516 (37%), Gaps = 43/516 (8%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61
           M+    +++W R+ LR+ DN AL AA    D    ++ VFI   E      +   +  F+
Sbjct: 1   MATRGANVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   +       +                   Q R+ K+   +  E     RD+
Sbjct: 61  LDSLQDIDDQIQTL-TDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDE 119

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ------------N 168
            +        I      S     P S++     +  +        +Q             
Sbjct: 120 TIRSLCHELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDAR 179

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------NALHI 218
           L  A    +    +R  G +     P  F+     +  +  I  +          +    
Sbjct: 180 LEDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLK 239

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LI 272
           + +   EK YY   Q      +    +SP+L  G LS R+ +  + + F ++        
Sbjct: 240 VEQHAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRG 299

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
              +G      +LIWRE++  +    P+                 +D   LQ W+ G TG
Sbjct: 300 VQMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLSIPWAKRDETQLQKWRLGQTG 359

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G 
Sbjct: 360 FPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDADWSVCAGN 419

Query: 392 WQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---- 446
           W W +S+  + +     +  P    KR DP G +IR ++PEL NVP ++IH P       
Sbjct: 420 WMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEPWRMNLQQ 479

Query: 447 --LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
               +  + ++YP  ++D  KA    +      +  
Sbjct: 480 QEQYECLIGVHYPDRLIDLSKAVKGNMLAMKTLRDS 515


>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 566

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 208/456 (45%), Gaps = 25/456 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
           + ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+ 
Sbjct: 84  ITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 142

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E L S         +F +++    E+  ++L
Sbjct: 143 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGAHTVFAHKETCSEELHVERL 198

Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + L+   +    +    S +     +      +  VYT FRK++           +P+
Sbjct: 199 VNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 258

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
               +       ++P        P +    M  +G ++A          K      Y + 
Sbjct: 259 SLGPIPSVDDWGDVPTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKDT 318

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +++ SP+L+ G +SPR  +  ++    + +       +  L ELIWR+++R
Sbjct: 319 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 376

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L     +        P   + +W++D  L ++W+ G TG+P+IDA M++L T G+M NR
Sbjct: 377 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDGKTGYPLIDANMKELYTTGFMSNR 435

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+  
Sbjct: 436 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 494

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            Q + +DP+G ++  WL +L  +P +  H P   + 
Sbjct: 495 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 530


>gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           ATCC 27126]
          Length = 543

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 186/516 (36%), Gaps = 48/516 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  SV ++W + DLR+ D++ LY A    +  ++ +F   P       +  R   FI  S
Sbjct: 6   SKQSVTVIWFKRDLRLRDHEPLYRAVEK-NENILPLFCWEPSLIADPHMDMRHWQFIQQS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +   L   G       C    + I+ L+       ++ +   ++  ++      +  
Sbjct: 65  IDDINAQLPS-GARLLTLHC----EVIDALELIAQHYAISTVRSYQEIGLSVTHNRDISV 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                +      +         + +           F        + +           +
Sbjct: 120 SNYLKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNI 179

Query: 185 TGPVTPSNIPRFFDYPF-----------------------QAIDPMFPIGEQNALHILRK 221
                  +    FD                          + ++ M P GE+ A  +L+ 
Sbjct: 180 NTACKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLDKLKKLNKMQPGGERRAWQVLKD 239

Query: 222 FCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           F   +  YY +    P       S+LSPYL+ G LS +Q +  ++ +     + P S   
Sbjct: 240 FFDARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRK 299

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEKIEWNKDSHLLQA------WKQGY 330
            W   L       H    +      +    + P     E        +A      W  G 
Sbjct: 300 QWSRALAALTSRLHWHCHFIQKFESEHSIEWRPMNSGYENFPFIDGPEAERRFYLWTMGL 359

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD +   +  
Sbjct: 360 TGYPLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGIHYP 419

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448
             Q  AS     +   R++NP  Q  + DP+G FI+ W+PEL  +P++ +HAPH      
Sbjct: 420 QIQMQAS--VTGIHTVRLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLLPPLE 477

Query: 449 ----KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 D+  +Y  P+VD  +    T  + +  +++
Sbjct: 478 AQMLDFDVERDYVEPLVDITENNRITAKRLWDYRER 513


>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
          Length = 547

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/512 (21%), Positives = 187/512 (36%), Gaps = 41/512 (8%)

Query: 10  HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL  A         +I +FI   E      +   +  F+  SL +
Sbjct: 6   NVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAE 65

Query: 68  VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + K L   +G             +            R+ K+ + +  E    RRD  +  
Sbjct: 66  IDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDDSVRA 125

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
                 I      S  L     +          T         ++ A  R +  P     
Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVEIIGAPPRPVEDPEWDGV 185

Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234
                       +  F+ +P      +FP        +  +  +++   ++ +R      
Sbjct: 186 EFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHLAERLKVEER 245

Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------KPKS 276
                       +   ++    +S +L  G LS R+ +  + + F  + I         +
Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEAFYHRIHMA 305

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
           G      +LIWRE++  +    P     +             +   LQ+W+ G TGFP+I
Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIPWAPPNQEQLQSWRSGQTGFPLI 365

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DAAMRQL   GW+H+ LR   A+FL +      W  G  +F+  LLD D +   G W W 
Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWMWV 425

Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
           +S+  + +     +  P    KR DP+G +IR ++PEL  +P +YIH P           
Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQEYIHEPWRMPQEMQENY 485

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  + + YP  IVD  K            ++ 
Sbjct: 486 ECVIGVQYPERIVDLAKVSKRNTLAXQTLRQS 517


>gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 302

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 119/258 (46%), Positives = 158/258 (61%), Gaps = 13/258 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD+PA+  TS LS YL  G +S R  W  L++E          G  ++  EL WR+
Sbjct: 48  YDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD 101

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            + +++         +P       IEW  +    + W+ G TGFP++DAAMRQL   GWM
Sbjct: 102 -FYNMIYVSFPKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWM 160

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRMITASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIF
Sbjct: 161 HNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIF 220

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NPT Q ++FDP GTFIR ++ EL ++P ++IH P    +         L  +YPLPI+DH
Sbjct: 221 NPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDH 280

Query: 464 KKACHHTLNQYYAAKKQS 481
           K+     + +Y  +K+ S
Sbjct: 281 KERRKLAIARYEFSKEHS 298


>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/512 (20%), Positives = 187/512 (36%), Gaps = 41/512 (8%)

Query: 10  HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W  + LR+ DN AL  A    +    +I +FI   E      +   +  F+  SL  
Sbjct: 6   NVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65

Query: 68  VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + K L   +G             +            R+ K+ + +  E    RRD  +  
Sbjct: 66  IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
                 I      S  L     +          T         ++    R +  P     
Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDWDGV 185

Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234
                       +  F+ +P      ++P        +     +++   ++++R      
Sbjct: 186 EFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEER 245

Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PKS 276
                       +   ++    +S +L  G LS R+ +  + + F  + I+        +
Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQRVHMA 305

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
           G      +LIWRE++  +    P     +             +   LQ+W+ G TGFP+I
Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQLQSWRSGQTGFPLI 365

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DAAMRQL   GW+H+ LR   A+FL +      W  G  +F+  LLD D +   G W W 
Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWMWV 425

Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
           +S+  + +     +  P    KR DP+G +IR ++PEL NVP +YIH P           
Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIHEPWRMPQELQENC 485

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  + + YP  IVD        +      ++ 
Sbjct: 486 ECVIGVQYPERIVDLANVSKRNVXAMQTLRQS 517


>gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
          Length = 569

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
           V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+ 
Sbjct: 85  VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 143

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E L S         +F +++    EV  ++L
Sbjct: 144 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 199

Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + L+   +    +    S +     +      +  VYT FRK++           +P+
Sbjct: 200 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 259

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
                       ++P        P +    M  +G ++A          K      Y E 
Sbjct: 260 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 319

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +++ SP+L+ G +SPR  +  ++    + +       +  L ELIWR+++R
Sbjct: 320 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 377

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G+M NR
Sbjct: 378 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 436

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R F+  
Sbjct: 437 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 495

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            Q + +DP+G ++  WL +L  +P +  H P   + 
Sbjct: 496 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 531


>gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 476

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 212/471 (45%), Gaps = 22/471 (4%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            +LR++D++ L AA   S   VI VFIA    +    + A         L    + L + 
Sbjct: 21  RNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFA---LGAAPKWRFGLGLAAFSEQLEKI 76

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-K 134
           G      +     D    L     + +   + + R Y+ + + RD  ++  L    I  +
Sbjct: 77  GSKLLLRR----GDVQSVLLDLIHETQACAVLWERSYDPSSINRDTAIKMALGEEGIVAQ 132

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLTGPVTP 190
           SF  ++L+ P  I       YKV+TPF + L Q ++     ++              +  
Sbjct: 133 SFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAPPASTVSNLVSPTDWPKGEDIKD 192

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             + +        +     +GE+ A+    KF  +    Y ++RD PAI  TS+LS  L+
Sbjct: 193 WQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPAIDATSKLSENLA 252

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR  W+  ++    +          ++ +L WR+F  HL    P +         
Sbjct: 253 YGEISPRLIWHLAQK----VAHIDDVNVVPFIRQLAWRDFAWHLTYHTPHILDANW-KAG 307

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            +   W      + AW++G TG  ++DAAMR+L   G MHNR RMI AS+L K L+VDWR
Sbjct: 308 WDTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMIAASYLTKHLMVDWR 367

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +G+E+F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FD +  +   W  
Sbjct: 368 VGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAEKFDKERKYRDFW-- 425

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQ 480
            LN V         +     ++ LN+ P P++         L  Y + KK 
Sbjct: 426 -LNPVQDGARQFAKAAPKSWNIDLNHRPKPLISLADGRARALTAYSSLKKS 475


>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus]
          Length = 585

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/497 (23%), Positives = 194/497 (39%), Gaps = 42/497 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY----ASL 65
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +   +      SL
Sbjct: 21  SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRMMKNEATQSL 79

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L        + +  Q+ + ++       L  +         F        + R   +++ 
Sbjct: 80  L--------RVLTLQWRKLASGGQ----LPCHMEWGVTRLTFEYDSEPFGKERDTAIMKM 127

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +  V   + +   L     I+    Q   +     +A+I  +         V + ++ 
Sbjct: 128 AKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQME 187

Query: 186 GPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQR 234
           G            Y   +++            ++  GE  AL  L K  + K +    +R
Sbjct: 188 GCRAEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYER 247

Query: 235 DIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + RL + +  +         S   +L+WREF
Sbjct: 248 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREF 306

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H
Sbjct: 307 FYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIH 365

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL V W  G   F   LLD D + N G W W + +      +F  +
Sbjct: 366 HLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCY 424

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H
Sbjct: 425 CPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNH 484

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 485 AEASRLNIERMKQVYQQ 501


>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
 gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
          Length = 543

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/514 (21%), Positives = 182/514 (35%), Gaps = 48/514 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL +A  + D    +I +FI   E      +   +  F+  SL  
Sbjct: 9   NVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRFLLDSLQD 68

Query: 68  VQ----KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +     ++   +G      Q        E       Q ++ K+ + +  E    +RD  +
Sbjct: 69  LDGKVQQATEGRG-RLHIFQ----GQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDASV 123

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +   Q   I      S  L     +          T         ++    R    P   
Sbjct: 124 KSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVEIIGLPPRPTNDPNWN 183

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---------------VY 228
             G V  S   +      Q                       +               V 
Sbjct: 184 NVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALLLLQERLKVE 243

Query: 229 YYVEQRDIPAI--------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------P 274
               +R                  +SP+L  G LS R+ +  + + F ++ ++       
Sbjct: 244 QSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQLQACVRGVQ 303

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            +G      +LIWRE++  +     +                      L+ W+ G TGFP
Sbjct: 304 MTGGSHITGQLIWREYFYTMSVNNSNYDRMDGNEICLNIPWSKPHEEKLERWRLGQTGFP 363

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W 
Sbjct: 364 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKYLLDADWSVCAGNWM 423

Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
           W +S+  + +     +       KR DP G +I+ ++PEL NVP +YIH P     ++  
Sbjct: 424 WVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELRNVPKEYIHEPWRMSAEDQE 483

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                + ++YP PI+D   A           +  
Sbjct: 484 RYECLIGVHYPEPIIDLSLALKRNTLAMTNLRNS 517


>gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
 gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
          Length = 515

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 172/512 (33%), Positives = 246/512 (48%), Gaps = 44/512 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++L+W R DLR  DN A  A C ++      VIAV   TP+QW+ H  S  Q   I   +
Sbjct: 1   MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SLSQ  I        +F      +   C Q  ++ LF N +Y +NEV RD+ + +
Sbjct: 61  RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL 177
           + Q   I  + FDDS ++ P  I+      YKV+TPF K  +         L       +
Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-------------------------PIGE 212
                        +         +  ID  +                         P GE
Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEE-F 267
             A   L  F K+ +  Y   RD+PA+      TS+LSPYL+IG+LSPR C+   +++  
Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAW 326
               +  +     W++EL WR+FY  +M   P +  GK F  P  E + W  D    ++W
Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM  L+DGD A
Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SNNGGWQW+AS G D+ PYFR+ NP  Q    DP  ++I+HW+PEL  VP   I+     
Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIINDEQKL 480

Query: 447 LDKNDLSLNYPLPIVD--HKKACHHTLNQYYA 476
                   +   P +D   K +    +  +  
Sbjct: 481 QTYLTQHPHIAYPTLDTPTKASRAMAIEAFKK 512


>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
          Length = 539

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 103/505 (20%), Positives = 178/505 (35%), Gaps = 39/505 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +   R+ LR+ DN AL  A  + DA  + +FI   E      +   +  F+  SL  
Sbjct: 10  KVAVHRFRHGLRLHDNPALLDAVKDCDA-FLPIFIFDGESAGTKLVGYNRMKFLLESLQD 68

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L + G        +     +           + KL + +  E     RD L++K  
Sbjct: 69  IDSQLKKYGGNLYLFHGT----PLCVFQYISQTIGLHKLCFEQDCEPIWQHRDDLVKKFC 124

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I C       L  P  ++     +  +        +  +         V    +  
Sbjct: 125 KENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIGPPPRPVEDVEWSVVNF 184

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------- 239
            V P +        F+        G  + +  + +  +         R +          
Sbjct: 185 GVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERLKVEENA 244

Query: 240 ----------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
                              +  S  L  G LS R+ +  +++ +    I   S   +  +
Sbjct: 245 FREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMY--SSICGPSPNQNITS 302

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +LIWRE++  +                      N        WK+G TG+P IDA MRQL
Sbjct: 303 QLIWREYFYTMSVGNEYYAEMDRNPICLNIPWKNDYGSDFNKWKEGKTGYPFIDAIMRQL 362

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL + W  G  +F+  LLD D +   G W W +S+  + 
Sbjct: 363 IQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGNWMWVSSSAFEQ 422

Query: 403 V-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
           +        P   G+R DP G +I+ ++PEL N P +Y++ P              +  +
Sbjct: 423 LLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAPLHVQETAGCIVGKD 482

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP  I+DH+ A     +     + +
Sbjct: 483 YPERIIDHQIASEKNRSYMDEIRNR 507


>gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 534

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 111/476 (23%), Positives = 174/476 (36%), Gaps = 33/476 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R  LRI D  A+  A  +    V+ +F+  P  +   G++   +  F++  L  + 
Sbjct: 29  VVWHREHLRIRDQGAVARAAAS--EYVLPLFVFDPAFYGADGLACDSRIRFLHDCLADLS 86

Query: 70  KSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                  G    Y       D ++ L  +                              +
Sbjct: 87  DQYHTATGCGLTYAH----GDPVDVLGRFREA-----------GWDIVTMAAPTGRYGRE 131

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +   D   +    ++         +     A      Q D     V +      +
Sbjct: 132 RDRRVREQCDVTFVDGDGLVRDRAATRDGWQDDVSAWFAA-DQHDWDPSTVTSRSFDSGI 190

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S I   +D      D            +     +   Y       + A  GTS LSPY
Sbjct: 191 DISTIEDHYDIAPSKSDVPRGGTGPARERLSAFAERIDDYPGNISAPVDARDGTSGLSPY 250

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G LS RQ    + E   D       G   +++ L W + Y   +  +P         
Sbjct: 251 LAFGCLSVRQVIQYIDEHAPDGR-----GKEMFVSRLFWNKHYEQKLEDWPGWLETAVNP 305

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                     D  L+ AWK G TGFP++DA+MR L   GW++ R+R ++AS     L   
Sbjct: 306 VLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMRSMSASVYYHLLQQP 365

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIG ++F   L+D   A N    QW +  G    P  R++NP  Q +  DP G FIR W
Sbjct: 366 WRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFIRQW 423

Query: 429 LPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL ++P +Y+  P             D+  +YP P+VD+  A      +Y A +
Sbjct: 424 VPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQAFHRRYEAVR 479


>gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata]
          Length = 588

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 103/445 (23%), Positives = 171/445 (38%), Gaps = 30/445 (6%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +        +       +  + KL      E     
Sbjct: 21  RFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKE 76

Query: 119 RDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  ++K      +      S        I+        +     + LI  +   ++   
Sbjct: 77  RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 136

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEK 226
            +    +    TP +      Y   +++            ++P GE  AL  L +  + K
Sbjct: 137 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 196

Query: 227 VYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R            + LSPYL  G LS R  + +L + +  +         S  
Sbjct: 197 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLY 255

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M Q
Sbjct: 256 GQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 314

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +   
Sbjct: 315 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF 374

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455
              +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +N
Sbjct: 375 -QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVN 433

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP P+V+H +A    + +     +Q
Sbjct: 434 YPKPMVNHAEASRLNIERMKQIYQQ 458


>gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii]
          Length = 475

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 108/477 (22%), Positives = 186/477 (38%), Gaps = 32/477 (6%)

Query: 28  AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87
            A + +D  V  V+I  P       +   +  F+  SL  +  SL +        +    
Sbjct: 1   EALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVR---- 55

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGS 146
               +       +  VT+L +    E     RD  + K  Q   +     ++     P  
Sbjct: 56  GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDR 115

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID- 205
           I+        +     +A++  L         +   ++    T  +      Y   +++ 
Sbjct: 116 IIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEE 175

Query: 206 ----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-----TSQLSPYLS 250
                      ++  GE  A+  L K    K +    +R             + LSPYL 
Sbjct: 176 LGFKTQRDSSHVWKGGETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLSPYLR 235

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LS R  +  L+E F+ L  +      S   +L+WREF+       P+    +   P 
Sbjct: 236 FGCLSCRVFYYNLRELFMKLRRRSSPPL-SLFGQLLWREFFYTAGTNNPNFDRME-GNPI 293

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369
             +I W+ +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W
Sbjct: 294 CVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 353

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G + F   LLD D + N G W W + +      +F  + P   G+R DP G +IR ++
Sbjct: 354 ESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYI 412

Query: 430 PELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P+L + P  YI+ P +  +         + ++YP P+++H ++    + +     +Q
Sbjct: 413 PKLKDYPNCYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQVYQQ 469


>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
 gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
          Length = 548

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 178/504 (35%), Gaps = 37/504 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  SQFKKHGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+CK      L  P +++     +  +        +  +         V    +    
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P +    F    +   P           I            ++Q               
Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLETEDIRMIRWVGGETTALKQMQQRLTVEYETFLRG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNE 284
                  +   +     LSP L  G LS R  +  +++ F  +     +          +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWRE++  +    P+           +          LQ W +G TGFP +DAAMRQL 
Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKTPSGDELQRWMEGRTGFPFVDAAMRQLR 360

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402
           T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ 
Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
           +       P   G+R DP G ++R ++PEL  +P +YI+ P              +  +Y
Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERASCIIGKDY 480

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480
           P P+V+H  A     N      + 
Sbjct: 481 PDPVVNHLVAAQRNRNAMKWLSRS 504


>gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
 gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
          Length = 474

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 110/474 (23%), Positives = 185/474 (39%), Gaps = 27/474 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLRI D++ L  AC +++ +VI ++IA P    +  +S R   F    L Q+
Sbjct: 1   MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEP-LSGRKEVSRRHIQFAAEGLEQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L   G        +     I+ L+    +     LF++ +Y+ +          RL 
Sbjct: 59  DEGLRGLGGRLF----AAQGTIIDILEELLKRYGDFSLFFHLEYDTDT--------DRLA 106

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +           P   L       +    +++++++ L            +     +
Sbjct: 107 AEWMGSKGLPFYPFHPPGQLEKPKSKSRFRKLWQESMLEELTDPPAAVRVPEKVPDFLNL 166

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQLS 246
           +            +AI      GE+  +  L  F  E+   Y    Q+ + +   +S+LS
Sbjct: 167 SVQKALGMKVKG-EAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPLASSFSSSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G +SPR  ++   ++  +     K     + ++L+ R                  
Sbjct: 226 PYLAYGNISPRLAYHEAAKKAENCTETEKQQLSLFQSKLLERSEALQWQEKETQA----- 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                       D+ LL+ W+ G TG P +DA+MR L   GW++   R + A F    LL
Sbjct: 281 -NAADSNSARAHDAELLEKWRTGNTGIPSVDASMRCLRKTGWLNYSSRRMLAGFACNILL 339

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW           LD + A +       A  G       +I +P   GK  D  G+FIR
Sbjct: 340 LDWEKAALELALLFLDHEPAVHMKEMGILA--GKSGSKTVKIIDPVKWGKELDTDGSFIR 397

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++PEL +V   YIH P  +     L   YP PI D +KA      Q    KK 
Sbjct: 398 RYVPELKDVDAAYIHEPWLYPGFFQLG--YPAPICDVRKAIKQAKRQIEDQKKD 449


>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 568

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 126/545 (23%), Positives = 207/545 (37%), Gaps = 85/545 (15%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFI 61
           M V L+W R DLR+ DN AL AA  +     SD ++I+++I    + +     A +  F+
Sbjct: 1   MKV-LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYII--HRPQIMRCGANRFQFV 57

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +  +L+++G      +     DSI+ L        +T +F++   E   V RD 
Sbjct: 58  LESVADLSGALAERGSKLVVAK----GDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDD 113

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                 +   +         L    ++   H+ +  K Y  F KA+       +    P 
Sbjct: 114 RALALAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQPTPREPIPTPE 173

Query: 180 PAI---------------------------------------RLTGPVTPSNIPRFFDYP 200
                                                     ++ GP     +P    + 
Sbjct: 174 TLPSPTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYFG 233

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--------IPAIQGTSQLSPYLSIG 252
           ++  +    I       +            V   +        IP    T+ LSPY+  G
Sbjct: 234 YETPEKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYG 293

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK----PFI 308
            LSPR  +++++        K      S + +L+WR+FY       P     +       
Sbjct: 294 CLSPRTFYHQVR-SIQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCLQ 352

Query: 309 PWTEKIEWNKDSH-----------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                    ++               +AW+ G TGFP IDA M QL   GWMH+  R   
Sbjct: 353 VNWRYHTIPENEEDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSV 412

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL + W  G E F  +L+D D + N G W W +S+   +  YFR+++P   GK
Sbjct: 413 ACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISFGK 471

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           + DP+G FI+ ++P L N P +YI+ P              +  +YP PI++HK A    
Sbjct: 472 KSDPEGLFIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCRIGKDYPTPIIEHKTAMKRC 531

Query: 471 LNQYY 475
           +    
Sbjct: 532 VEGLK 536


>gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens
           BL2]
          Length = 494

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 195/501 (38%), Gaps = 60/501 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYASLLQ 67
           LVW R+DLR++D+ AL AA   +D +VIAV+I             +      + + SL  
Sbjct: 10  LVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRWWAHESLAI 67

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  GI   +       ++   +        V  + ++R+Y       D  ++  L
Sbjct: 68  LHQELSDLGIPLLF----AAGEAAAIIPQLTGSLGVGAVRWSRRYAPASRALDSQIKTVL 123

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAI 182
             + +   S   S+L+ P +        YKV+TPF KA+    V           P+   
Sbjct: 124 HEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREVGDVLPTPEPQSPIDRS 183

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--- 239
            +      + +                                  ++    R        
Sbjct: 184 LVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQDTIACHWLPGTRAAADQLDD 243

Query: 240 ------------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
                               TS+LSP L  G LSPRQ  +  +               +W
Sbjct: 244 LAVGIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQLLHAAQ----TTRSVTPDDRAAW 299

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L WREF  HL   YP      P         +  D   L  W+ G TG+P+IDA M 
Sbjct: 300 VRQLYWREFSWHLTYHYPD-IDYTPIRREFRNFPYEDDDEALAHWRSGATGYPLIDAGMA 358

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D A+N   WQW A +G D
Sbjct: 359 QLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEANNPVSWQWVAGSGAD 418

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + PYFR+FNP  Q +RFDP G ++  WLP             +               IV
Sbjct: 419 AAPYFRVFNPERQRERFDPDGAYVDDWLP-------------YPPAAAPAP-------IV 458

Query: 462 DHKKACHHTLNQYYAAKKQSL 482
           D   +    L+ Y   K  S 
Sbjct: 459 DLADSRQAALSAYDRMKNMSA 479


>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
          Length = 1184

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/516 (22%), Positives = 186/516 (36%), Gaps = 74/516 (14%)

Query: 10  HLVWLR-NDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSH 59
            ++W R  DLR+ DN  ++ A    +A    +V+ +F   P       W        ++ 
Sbjct: 17  AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN---- 115
           F+  S+  ++  L   G               E L     Q+                  
Sbjct: 77  FLLESVRDLKARLRALGSDLLI----CMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEE 132

Query: 116 --EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
               ++ K        ++          L           M  V+TPF++          
Sbjct: 133 LAIEKKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRK 192

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------------------- 214
               P P          +    F     + ++ + P G                      
Sbjct: 193 PFPAPAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTRAVLDFEGGES 252

Query: 215 ---ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
              A      F    V  Y + R+ +     +++L+P+L+ G LSPR  +  +K      
Sbjct: 253 AALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRYERQT 312

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
               K   +  + ELIWR+FYR     + S    +      +  +W+ D+  L+ WK+G 
Sbjct: 313 GTANK-STYWVVFELIWRDFYRFFALKHGSKIFLEGGT-TGQAPQWSNDAEALRRWKEGR 370

Query: 331 TGFPIIDAAMRQLNT--------------------IGWMHNRLRMITASFLVKDLLVDWR 370
           TG+P++DA  R+L                       G+M NR R   ASFL  DL VDWR
Sbjct: 371 TGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFLALDLGVDWR 430

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G ++F   LLD D+ SN G W   A+ G         FN T Q K +D +G +IR W+P
Sbjct: 431 RGADWFEHLLLDYDVCSNWGNW--VAAAGLTG-GRVNKFNITKQSKDYDSEGQYIRTWVP 487

Query: 431 ELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           EL  VP + IH P     +        + ++YP P+
Sbjct: 488 ELACVPARRIHEPWLMSREEQAAAGVQIGVDYPAPL 523


>gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii]
          Length = 564

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/452 (22%), Positives = 179/452 (39%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
            +   +  F+   L  +  SL +        +        +       + ++T+L Y   
Sbjct: 3   NVGINRWRFLLQCLEDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKITRLSYEYD 58

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170
            E     RD  ++K      +      S        I+        +     + LI  + 
Sbjct: 59  SEPFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMD 118

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219
             ++ +  + A  +    TP +      +   +++            ++P GE  AL  L
Sbjct: 119 PVEIPAETITAEVMGKCATPVSDDHDDKFGVPSLEELGFETDGLSSAVWPGGETEALTRL 178

Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            +  + K +    +R            + LSPYL  G LS R  + +L + +  +     
Sbjct: 179 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSL 238

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               S   +L+WREF+       P     + F P   +I W+++   L  W +G TGFP 
Sbjct: 239 PPL-SLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGRTGFPW 296

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W
Sbjct: 297 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW 356

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP L   P ++I+ P +  +      
Sbjct: 357 LSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVA 415

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP P+V+H +A    + +     +Q
Sbjct: 416 KCIIGVHYPKPMVNHAEASRINIERMKQIYQQ 447


>gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
 gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
          Length = 458

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 208/448 (46%), Gaps = 28/448 (6%)

Query: 34  DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           +  VI V++   +  RQ  +      +++ SL  +  SL +KG      Q     DS+E 
Sbjct: 27  EGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDASLREKGSRLILRQ----GDSVEQ 82

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L +   +    ++     YE      +K + KRL   +     D  +LLPPG +      
Sbjct: 83  LVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRLDLCL----HDGGLLLPPGVVRTGGGS 138

Query: 154 MYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            Y++YTPF +A+++ +  A       R         +  +    +         A    +
Sbjct: 139 SYRIYTPFARAVMEQMPPATPVRAPSRIDAPSDWPKSDSLADWGLLPVKPDWAVAFSSDW 198

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             GE  A   +  F  E   Y V  R++P+ +GTS+LSP+L  G +SP   W+R+     
Sbjct: 199 TPGEAGARTNVAAFLDEAADYDV-ARNLPSQEGTSRLSPHLHFGEVSPAYVWHRI----- 252

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW--TEKIEWNKDSHLLQAW 326
              +     A ++L ELIWR++    +   P+         +      +  +     +AW
Sbjct: 253 ---VGTGDDATTFLKELIWRDYAHTQIWAMPTYGSENARPAFDAMPWRDLREAGEDFKAW 309

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+PI+DA MRQL   GWMHNR+RMI ASFL+K LL+DWR G  +F   L+D   A
Sbjct: 310 QSGRTGYPIVDAGMRQLWATGWMHNRVRMIAASFLIKHLLIDWRHGARWFWDTLVDASYA 369

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           +N+  WQW A +G D+  + RI  P  Q ++FD  G +IR W+PEL ++  ++IH P   
Sbjct: 370 NNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFDAAG-YIRTWVPELAHLDDEHIHDP--- 425

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
                   +YP   + H++     L  +
Sbjct: 426 DAHGIRPPDYPAKRIGHREGRERALAAW 453


>gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 463

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 210/478 (43%), Gaps = 28/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R+ DN  L AA       V+ V++   + +    I  RQ  F   ++ ++
Sbjct: 1   MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLFGA--IGERQQAFWMHAVREL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++             D  + + +   +  +  +  N+ Y      R + +   L 
Sbjct: 59  KEAYRERESDLIVR----AGDPGDIIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I        +L     L+ +   +  +    + + +             A       
Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDASYPNHSQFHNDWEDVPKR-----------SAYDSPPAE 163

Query: 189 TPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI------PAIQG 241
           T  +I      P   ++   P  G + A   L +FC   +Y Y + RD            
Sbjct: 164 TLVDITDSKTVPVPTVEIDLPPSGYEAARDRLDRFCDRGIYDYNDTRDDLAQAAEKPTTA 223

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S++SPYLS G++  R+ W+     +  +    +  A  +  EL WRE   HL+ + P +
Sbjct: 224 VSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQNYHLLYYNPDL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +   +     +I+W  D    ++W  G TG+P++DA MRQLN  G++HNR R + ASFL
Sbjct: 284 AVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIHNRPRQVVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LLVDWR G  YF  QL+D D ASN+G WQW ASTG DSV   RIF+P  Q  ++D  
Sbjct: 343 TKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSVD-VRIFDPVSQLSKYDDG 401

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             F+R ++PEL++ PT+ I    +    D+   +  YP PIV   +        +  A
Sbjct: 402 ANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEGYERAQQTFEKA 459


>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
 gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 146/475 (30%), Positives = 225/475 (47%), Gaps = 24/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR D R++D+  L AA   S   V+A+FI  P         A     +  +L     
Sbjct: 8   LLWLRRDFRLSDHPMLSAAA-ASGRPVLALFILDPL---AEAYGAAPKWRLEQALAAFAP 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           +L+  G+     +      ++  L     +     ++++R  +   + RD  ++  L+  
Sbjct: 64  ALAACGVPLVLRRGP----ALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAE 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADLRSLPVPAIRLTG 186
            +  +SFD  +L  P ++       Y+VYTP+ +A+         A + +L    +    
Sbjct: 120 GLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPLAPVTALRPGPVLRGE 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +    + R        +     +GE  A   L +F +E +  Y  +RD  A   TS+LS
Sbjct: 180 SLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATSELS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L+ G +SPR  W+   +   +       GA ++L EL+WREF  HLM +YP +     
Sbjct: 240 EHLAWGEISPRVIWHAGAQAMAEGRA----GAETFLKELVWREFAWHLMFYYPRLATENW 295

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  +   W  +S   + W++G TG PI+DAAMR++   G MHNR RMI AS+L K LL
Sbjct: 296 -RPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTKHLL 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWRIG  +F   L+D D A+N  GWQW A  G D+ PYFRIFNP  Q ++FDP+G + R
Sbjct: 355 TDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGRYRR 414

Query: 427 HWLPEL-NNVP----TQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            WL E   + P      +   P SW      +L+   P++D        L  Y A
Sbjct: 415 AWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALS--APLIDLAAGRDRALAAYAA 467


>gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
 gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
          Length = 582

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 77  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 135

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+              + L S         ++ +++  
Sbjct: 136 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 191

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             E+  + L+ K L+  VI +    +   P    L         +       + NL   D
Sbjct: 192 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 249

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217
           + +    A+     V   +       P          G                      
Sbjct: 250 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 309

Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                           + K+++  Y E R+ +     +++ SP+L+ G LSPR     +K
Sbjct: 310 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 369

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                 +       +  L ELIWR+++R + A Y +        P   + +W++D  L +
Sbjct: 370 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 426

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D
Sbjct: 427 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 486

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +      
Sbjct: 487 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE------ 539

Query: 445 SWLDKNDLSLNYPLPIVDHK 464
               +N    +Y   +V  K
Sbjct: 540 ---RRNFPGASYIKQVVPLK 556


>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
 gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
          Length = 473

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 207/472 (43%), Gaps = 30/472 (6%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           +D+ AL AA       VI V I      + HG+ A     +   +  + ++L++KG    
Sbjct: 16  SDHPALRAAVARG-GPVIPVMIRDD---QMHGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDS 139
                    + E L +   +     +++ R Y+   + RD+ +++ L    +  +S    
Sbjct: 72  LRS----GQAAEVLSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHAGH 127

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTGPVTPSNIPR 195
           +L  P  +       YKVYTP+  A+        + A            +  +    +  
Sbjct: 128 LLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTAPAEITAPAHWPESEDLDDWALGA 187

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                     P   +GE  A   L  F  + +  Y  +RD+P   GTS LS  LS+G +S
Sbjct: 188 AMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENLSLGEIS 247

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-I 314
            RQCW+       +       GA +W  EL+WREF  HL+   P +  G     W     
Sbjct: 248 IRQCWHAAMRARQEGAA----GAETWAKELVWREFAYHLIYHTPRLASGNWREEWDGFPW 303

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
               DS  + AWKQG TG   +DAAMR++   G MHNR RM+ AS+L K LL  WR+G+ 
Sbjct: 304 REAGDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHWRVGQR 363

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +F   L D D+ASN  GWQW A +G D+ P+FR+FNP  Q ++FD  G + R W+ E  +
Sbjct: 364 WFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKGGAYRRAWIAEGQD 423

Query: 435 VPT-------QYIHAPHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
            P        + I    +          YP  PIV  K+     L  Y A K
Sbjct: 424 APPDTALAYFEAIPQSWNLSASRR----YPDSPIVGLKEGRQAALAAYEARK 471


>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
          Length = 548

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 180/499 (36%), Gaps = 37/499 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKLVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  SQFKKFGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C+      L  P +++     +  +        +  +         +    +    
Sbjct: 121 IGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P    + F    +   P           I            ++Q               
Sbjct: 181 LPECFYQEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLSVEYETFLRG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI---KPKSGAFSWLNE 284
                  +   +     LSP L  G LS R  +  +++ F  +        S +     +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWRE++  +    P+           +    N +   LQ W +G TGFP +DAAMRQL 
Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLR 360

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402
           T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ 
Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
           +       P   G+R DP G ++R ++PEL  +P +YI+ P              +  +Y
Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKDY 480

Query: 457 PLPIVDHKKACHHTLNQYY 475
           P P+V+H  A     N   
Sbjct: 481 PAPVVNHLVAAQRNKNAMK 499


>gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 539

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/462 (21%), Positives = 165/462 (35%), Gaps = 17/462 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW + DLR+ D+        ++   V+ + I  PE WR   +S RQ  F+   +  +
Sbjct: 5   VSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDVSHRQYAFLAGCIEDL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +++  G             +IE L++   +     L+ + +             +R  
Sbjct: 63  AAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTHARDRAVRR-- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +    + L   G I   AL   +    + + +    +                  
Sbjct: 117 -WARAQGVAWTELRQFGVIRGPALDRDRWAAHWDRMMAAPWLPQPRGIAWAALPEGLAAG 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSP 247
                      P        P        +          Y        + +   S+LSP
Sbjct: 176 GVPAAAALGIAPDGLRHGQAPGRAAALETLGSFLASRGEDYTRAMSSPVSGEAACSRLSP 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGK 305
           YL+ G +S R+          ++    + GA   S++  L W   +   +   P     +
Sbjct: 236 YLAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE-AEWR 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF    E +    D   L AW +G TG+P IDAAMR L   GW++ R+R +  SF   DL
Sbjct: 295 PFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+           D +   +    Q    +G   +   R+++P  QG   DP G FI
Sbjct: 355 FLPWQESGLVLARLFTDYEPGIHWP--QCQMQSGETGINTVRVYSPVKQGFDQDPAGRFI 412

Query: 426 RHWLPELNNVPTQYIHAPHS--WLDKNDLSLNYPLPIVDHKK 465
           R  +PEL  V    +H P      ++  L   YP  IV H++
Sbjct: 413 RLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 454


>gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 473

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 205/464 (44%), Gaps = 35/464 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+  T     LVW R +LR+TDN AL AA       V  VF            + RQ+ F
Sbjct: 30  MQKNT-----LVWFRRNLRLTDNAALAAAVRRG-LPVAGVF-------AADAANPRQAAF 76

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + AS  ++ ++L+++GI     Q     ++   +     +     +  +     +E  RD
Sbjct: 77  LRASAAELHRALAERGIPLFVAQ-----EAETDIPRLAAELDAAVVVADEGCMADETARD 131

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + + L  +    +  +D        I++   + Y  + P+R+A ++   Q      P 
Sbjct: 132 NRIWRVLDAQGRAFERVNDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPS 191

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            ++ +        +P F   P  A       G + A           +  Y      PA 
Sbjct: 192 ESLPVGFQTAFGILPPFPALPETAPQEWRQQGGEAAGRRQWARFAADIGNYPLMSGFPAK 251

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GT ++  YL+ G LSPR+                K GA  WL+ L+ R+F+R +M   P
Sbjct: 252 KGTGRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDFFRQVMFHRP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +   P    I+W     +L  W+QG TGFP+IDAAMR LN  GW+H  LR   A+
Sbjct: 302 EAA-AEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLHPALRAAAAA 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-GNDSVPYFRIFNPTIQGKRF 418
           FL + LL DWR G  +F   L D D ASN G WQ AA   G  S       NP +Q ++ 
Sbjct: 361 FLCRILLADWRHGAAWFARCLTDYDPASNTGNWQEAAGVFGLFSGGAA---NPVLQAQQL 417

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           DP GTFIR ++PEL ++P   +HAP       D +  YP P+ D
Sbjct: 418 DPDGTFIRRYVPELAHLPKDVVHAPWLARASVD-THGYPPPMAD 460


>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
 gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
          Length = 547

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+              + L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 156

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             E+  + L+ K L+  VI +    +   P    L         +       + NL   D
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217
           + +    A+     V   +       P          G                      
Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274

Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                           + K+++  Y E R+ +     +++ SP+L+ G LSPR     +K
Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                 +       +  L ELIWR+++R + A Y +        P   + +W++D  L +
Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D
Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P 
Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509

Query: 445 SWLDKNDLSLNYPLPIVDHK 464
                     +Y   +V  K
Sbjct: 510 --------GASYIKQVVPLK 521


>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
          Length = 547

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+              + L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHQETC 156

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             E+  + L+ K L+  VI +    +   P    L         +       + NL   D
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217
           + +    A+     V   +       P          G                      
Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274

Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                           + K+++  Y + R+ +     +++ SP+L+ G LSPR     +K
Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                 +       +  L ELIWR+++R + A Y +        P   + +W++D  L +
Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D
Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P 
Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509

Query: 445 SWLDKNDLSLNYPLPIVDHK 464
                     +Y   +V  K
Sbjct: 510 --------GASYIKQVVPLK 521


>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
 gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
          Length = 488

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/495 (23%), Positives = 183/495 (36%), Gaps = 55/495 (11%)

Query: 11  LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           +VW RNDLR+ DN A+  A       +   V+ +++  P       W        +  F 
Sbjct: 3   VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L ++++L   G               E +  Y L     K       E+    + K
Sbjct: 63  LESVLNLKRNLRAIGSDLLV----AVGKPEEVIPKYLLDAPGAKNEEVCSEELRVDAKVK 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
              K   +         S L     +   +                         +P PA
Sbjct: 119 SAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVPPPA 178

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNA---------LHILR 220
                  +       F+     +                P G                  
Sbjct: 179 KGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAALARVRYY 238

Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            +  EK+  Y E R+ +     +S+L+P+L+ G +SPRQ    +++   +         +
Sbjct: 239 VWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRK--FESQRVENKSTY 296

Query: 280 SWLNELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWKQGY 330
             + ELIWR+F++     + +                        W  D   L AWK+G 
Sbjct: 297 WLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDDPAALAAWKEGK 356

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P++DA MR+L   G+M NR R   AS+L  D  VDWR+G E+F ++LLD D ++N G
Sbjct: 357 TGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENKLLDYDCSANWG 416

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--- 447
            W   A+ G         FN   Q K +DP+G +I++W+PEL  VP +YI  P       
Sbjct: 417 NW--VAAAGMTG-GRVNKFNIAKQTKDYDPEGEYIKYWVPELRKVPAKYIAEPRQMPGDV 473

Query: 448 ---DKNDLSLNYPLP 459
                  + ++YP P
Sbjct: 474 AQSAGCVIGVDYPAP 488


>gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 477

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 167/478 (34%), Gaps = 27/478 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+ D++ LY A    +   I ++I  P          R   FI  SL  
Sbjct: 4   KINIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLED 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q  L++            + +S++  +    +  +  +F + +  +N            
Sbjct: 63  IQLELAKNQNKLSI----AYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANF 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             R      +                   +     +          +R   +        
Sbjct: 119 FKRQNITWIESQSNGV-------------IRGLQDRKTWDKAWARFMRDKTIKINPQKLN 165

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245
           +   +        F+        G   A   L  F   +   Y +    P    +S   +
Sbjct: 166 IIDIDFGEINIPSFEEDSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSCSRM 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S Y++ G +S RQ + ++ E +  +    +    +  + + W   +         +    
Sbjct: 226 SAYIAYGNISIRQIYQKILENWNRVG--WRRSMAALSSRIHWHCHFIQKFESECRIENET 283

Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +       +D       +W  G TGFP+IDA+MR L   G+++ R R +  SF   
Sbjct: 284 INKGYQNFPYLVEDEEHADFTSWLNGMTGFPLIDASMRALRYSGYINFRSRAMVVSFACH 343

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + W++  +      LD +   +    Q  A  G   +   RI+NP  Q    DP+  
Sbjct: 344 YLRIHWKLVAKALARLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPKKQAMDHDPEAI 401

Query: 424 FIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FI+ W+PELN+   +YI   P    D      NYP    + ++    + +  +  KK 
Sbjct: 402 FIKTWIPELNSHQPEYIINLPLQSNDLFSNESNYPQAQYNFQERIRESKDLLWQWKKS 459


>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 455

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 196/454 (43%), Gaps = 24/454 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+            ++  V+ V++   E  R   +      +++ SL  + +
Sbjct: 6   LVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDE 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q+G      +     +    L     +    ++      E      ++ + K L   
Sbjct: 64  GLRQRGSRLILRRGPAHRE----LAELAREVGARRVHALAHVEPWWRNAERAVAKTLDLV 119

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +       +  GS L + +          +      V A  R     +      + 
Sbjct: 120 LHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTHRPVPAPGRIDAPASWPDGDRLD 179

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              +              +  GE  A   L  F  +   Y  E R+ P+++GTS+LSP+L
Sbjct: 180 DWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFIGKASRYG-EWRNFPSVEGTSRLSPHL 238

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S    W+ + +              ++L E+ WR++  +++   P    G+    
Sbjct: 239 HFGEISAATVWHSVADAGG--------SVSTFLGEVGWRDYAANVLLQMPDYA-GRSARE 289

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E+  W +D+  L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI ASFLVK LL+DW
Sbjct: 290 AFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAASFLVKHLLIDW 349

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +F   L+D D A N   WQW A TG DS  + RI  P  Q  +FD  G +IR W+
Sbjct: 350 REGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG-YIRRWV 408

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PEL++V    IH P            YP P++DH
Sbjct: 409 PELSDVADADIHDP------RIRPRGYPAPLIDH 436


>gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
 gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
          Length = 479

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 216/474 (45%), Gaps = 24/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+R DLR+ +N A   A   + A VI VFI          + A     +   L  + K
Sbjct: 12  LWWVRRDLRLAENPA-LDAAVAAGAPVIPVFIFDTL---DEDLGAAPRFRLGLGLAHLAK 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++G      +      + E L     +     + + R Y+   + RD  ++K+L+ +
Sbjct: 68  GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  KSF   +L  P ++      MY+VY+P+ K++       L+ A  R         +
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAQWPAS 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  A   L +F   +V  Y + RD PA+  TS L
Sbjct: 184 DDLDSWQLAAGMRRGADVVAQYCRVGEDAAQARLAEFLDTRVADYKQDRDFPAVDATSGL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR+ W+   E           GA  +L E++WREF  HLM   P +    
Sbjct: 244 SENLAWGEISPRRMWHHGLEARRAGKS----GAEHFLKEIVWREFAYHLMFHTPHILTRN 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W       +D   + AW++G TG+  +DAAMR+L   G MHNR RMI ASFL K +
Sbjct: 300 WRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G + 
Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             W+ E    P Q     Y   P SW            P VD K+     L  Y
Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRA--SPFVDLKEGRARALEAY 471


>gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 475

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 209/498 (41%), Gaps = 53/498 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59
           M+  L+WLR+DLR+ D+ AL AAC  +   V+A++I           +     + A    
Sbjct: 1   MTT-LIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + + SL Q+   L+  GI   + +     D+   +       + T + + R+Y     R 
Sbjct: 60  WYHRSLQQLAPRLADLGIPLIFAR----GDAARIMRRVVDTLQPTFVHWTRRYAPAACRL 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  +++ L+ R    S   S+L  P  +   +   Y+V+TPF  A+    +   L     
Sbjct: 116 DAAIKQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSP 175

Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                              L        +    D+    +   +  GE  A   L     
Sbjct: 176 VDEPDGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDAIDG 235

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y   +        TS++SP L  G LSPRQ     +               +W  +
Sbjct: 236 WLPGYAKRRDLPGEETSTSRISPRLRCGELSPRQALAAARSSTAAGEDI-----AAWTRQ 290

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF  HL+          P  P  E+  ++ D HL++AW+QG TG  ++D  M QL 
Sbjct: 291 LYWREFCWHLLHHR-EHLEDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLW 349

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A +G D+ P
Sbjct: 350 QTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAP 409

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           YFRIFNP +Q  RFDP  ++++ W+PE    P                      P+VD  
Sbjct: 410 YFRIFNPELQRTRFDPHSSYVKRWIPEGLARPVV--------------------PVVDLA 449

Query: 465 KACHHTLNQYYAAKKQSL 482
           ++    L  Y   +  S 
Sbjct: 450 ESRREALAAYEQVRAASA 467


>gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus]
          Length = 577

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 172/446 (38%), Gaps = 30/446 (6%)

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+   L  +  +L +        +        +       +  + KL      E    
Sbjct: 13  IRFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGK 68

Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  ++K      +      S        I+        +     + LI  +    +  
Sbjct: 69  ERDAAIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMDPLAMPV 128

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKE 225
             + A  +   +TP +      Y   +++            ++P GE  AL  L +  + 
Sbjct: 129 ETITAEVMGKCMTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 188

Query: 226 KVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K +    +R            + LSPYL  G LS R  + +L + +  +         S 
Sbjct: 189 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SL 247

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M 
Sbjct: 248 YGQLLWREFFYTAATSNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 306

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +  
Sbjct: 307 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 366

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSL 454
               +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +
Sbjct: 367 F-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGV 425

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQ 480
           NYP P+V+H +A    + +     +Q
Sbjct: 426 NYPKPMVNHAEASRLNIERMKQIYQQ 451


>gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 493

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 164/483 (33%), Gaps = 42/483 (8%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS   LVW + DLR+ D+ AL+AA     A   A+F+  PE        A+   F    +
Sbjct: 1   MSTLALVWFKRDLRVQDHAALHAAAQCDAAL--ALFVMEPEWIASPECDAQHVQFAADCV 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL+Q G+           D  +  +    + R T LF + +              
Sbjct: 59  AALRESLTQAGLRLLVR----VGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDKRV- 113

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                   +        P   ++            ++K +    V               
Sbjct: 114 ---AHWCREQGVIWQEWPQNGVVRRLRDRAGWAARWQKRMDAPQVPVPQGLRDASKPLAA 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G        R    P     P        +        +   Y       + A +G S+L
Sbjct: 171 GD---FPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSRL 227

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-------WREFYRHLMAFY 298
           S +L+ G LS RQ     ++    L    +  A +    L        W   +   +   
Sbjct: 228 SAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFMQKLEDE 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +             E   +    +AW  G TGFP++DA MR LN  GW++ R+R +  
Sbjct: 288 PGIEFHNFARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAMLV 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L + WR    +   Q LD +   +    Q    +G   +   R+++P  Q    
Sbjct: 348 SFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQADH 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DPQG FIR W+PE                        YP PIV+ + A     ++ YA +
Sbjct: 406 DPQGEFIRQWVPE------------WGTSA-------YPPPIVNERSAVKQAKDRIYAIR 446

Query: 479 KQS 481
           +  
Sbjct: 447 QSP 449


>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
 gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
          Length = 553

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 125/531 (23%), Positives = 222/531 (41%), Gaps = 79/531 (14%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAK--------VIAVFIATPEQWRQHGIS- 54
              +   L+W RNDLR+ DN++L      +++         V+ ++   P  +    I  
Sbjct: 5   NNTLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGK 64

Query: 55  -----ARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                A ++ F+  S+  ++K+L ++ G+              E +   C Q  + ++F 
Sbjct: 65  FRKANANRTRFLTESVDNLRKNLMNEWGLKLMIQ----IGHPEEIIPHLCSQYEIEQVFA 120

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ- 167
           +++    E   +++    L+ ++         ++    +      +  V+T FR+ +   
Sbjct: 121 DKEVTSEETSIEQV----LEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENP 176

Query: 168 -----------------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
                                  NL+Q +      P +++ G           +      
Sbjct: 177 KLIVRPLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLKDPRS 236

Query: 205 DPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWN 261
              F  GE  A        + ++++  Y E R+    +  +S+LSP+LS+G +SPR+ ++
Sbjct: 237 VLHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYH 296

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG----------------- 304
            +K    + +       +  + EL+WR+++R     + +                     
Sbjct: 297 EVKRYEKERVEND--STYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGD 354

Query: 305 ---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                     ++  W +D  L + W  G TG P +DA MR+L   GWM NR R   ASFL
Sbjct: 355 SSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVASFL 414

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPYFRIFNPTIQGKRFDP 420
            KDL +DWR+G EYF S LLD  + SN G W +AA  G  D     R FN   QG  +D 
Sbjct: 415 SKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGFDYDF 474

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
            G F++ W+PEL+ VP + IHAP+   +      K  + ++YP  +V+ K 
Sbjct: 475 NGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVKA 525


>gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a]
          Length = 565

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 239/503 (47%), Gaps = 46/503 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  
Sbjct: 75  STVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109
           FI  +L  +Q+SL++  I     +        SN  + +E+    C+         +  N
Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 194

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166
            +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +   
Sbjct: 195 IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLYV 254

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218
            N  ++      +  I          +  F            P  +              
Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKP 274
           L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +          +K 
Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKD 374

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG P
Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GGW +
Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGF 494

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
            +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N    
Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541

Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477
           NYP P+VD K +    L  Y  A
Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564


>gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c]
 gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial;
           AltName: Full=DNA photolyase; AltName:
           Full=Photoreactivating enzyme; Flags: Precursor
 gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae]
 gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789]
 gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291]
 gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118]
 gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c]
 gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 565

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 239/503 (47%), Gaps = 46/503 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  
Sbjct: 75  STVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109
           FI  +L  +Q+SL++  I     +        SN  + +E+    C+         +  N
Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 194

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166
            +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +   
Sbjct: 195 IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 254

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218
            N  ++      +  I          +  F            P  +              
Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKP 274
           L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +          +K 
Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKD 374

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG P
Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GGW +
Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGF 494

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
            +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N    
Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541

Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477
           NYP P+VD K +    L  Y  A
Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564


>gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae]
          Length = 565

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 240/503 (47%), Gaps = 46/503 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  
Sbjct: 75  STAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109
           FI  +L  +Q+SL++  I     +        SN  + +E+    C+         +  N
Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITAN 194

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166
            +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +   
Sbjct: 195 IEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 254

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218
            N  ++      +  I          +  F            P  +              
Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKP 274
           L+ F   K   Y  ++D+  + GTS LS Y++ G +  R    Q +    E+ +   +K 
Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKALKD 374

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG P
Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DA MR+L   G+++NR RMITASFL K+LL+DWR G+ +FM  L+DGD +SN GGW +
Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGGWGF 494

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
            +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N    
Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541

Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477
           NYP P+VD K +    L  Y  A
Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564


>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
           (fragment)
 gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus]
          Length = 339

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 141/340 (41%), Positives = 189/340 (55%), Gaps = 15/340 (4%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--- 201
             +L      YKV+TP+ KA  +   +          +      T  +      +     
Sbjct: 1   DQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIK 60

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           +       IGE++A+  L+ F K+++  Y   RD P+I GTS+LSPY+  G +S R  + 
Sbjct: 61  KCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYY 120

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +     D        A ++L EL WR+FYR +  + P  C  +  +    ++ W+ D  
Sbjct: 121 HILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKDREIMEGYRELNWSHDQD 174

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KDLL+DWR+GE YF   L+
Sbjct: 175 DLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLI 234

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+IR ++PELN+VP  YIH
Sbjct: 235 DYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIH 294

Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
            P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 295 EPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 334


>gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 457

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 95/438 (21%), Positives = 175/438 (39%), Gaps = 27/438 (6%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +S RQ  F+   L ++   L++ G            D++E  +    +  +  ++ +++ 
Sbjct: 1   MSHRQYLFLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQET 56

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             +   +  +  ++       ++           ++            + + + + +++A
Sbjct: 57  WNDWTYQRDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRA 112

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             +   +   ++  P   S    + D            G   AL IL  F  ++   Y +
Sbjct: 113 PTKLKFICENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTK 167

Query: 233 QRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLN 283
           +   P       S+LSPY++ GV+S ++ + +  +   ++         K  S   S+L+
Sbjct: 168 EMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLS 227

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            L W   +   +   PS+        + +      +    +AWK G TG+P+IDA MR L
Sbjct: 228 RLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRAL 287

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW++ R+R +  SF    L +DWR+   Y      D +   +    Q    +G   +
Sbjct: 288 IATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFTDYEPGIHYS--QVQMQSGTTGI 345

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
              RI+NP  Q     P G FIR WLPEL NV  + IH P         SL+YP P +D 
Sbjct: 346 NSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDE 402

Query: 464 KKACHHTLNQYYAAKKQS 481
           K+A     +  Y  +K S
Sbjct: 403 KQARKFAADNIYKIRKSS 420


>gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130]
 gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130]
          Length = 633

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 156/488 (31%), Positives = 231/488 (47%), Gaps = 63/488 (12%)

Query: 11  LVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  DLR+ DN+AL  A   +      ++A+F+ +P+ +  H  S+R+  F   +L+
Sbjct: 71  VFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHDRSSRKIDFTLRNLV 130

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L++  I             +  +  +        +F N +YE++E+RRD  L  +
Sbjct: 131 SIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNHVFANIEYEVDELRRDIELCSK 190

Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI--------------QNLVQ 171
            +      S + +  ++ PG I +   + Y VY+P+ +  +              Q+   
Sbjct: 191 AREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWVSIVNSHLSDYLEEAQDPAP 250

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHI---------- 218
                   P I         +    F    +    M   +P GE  A  I          
Sbjct: 251 NGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDAASQILQRFLQTKAR 310

Query: 219 --------------LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                                ++  Y   RD      TS+LSPYLS GV+S R+    + 
Sbjct: 311 ASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLSSGVISIREVLRAIL 370

Query: 265 EEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-- 320
           +      L    K+GA  +++EL WR+FY  ++A YP + MG+PF+     I W      
Sbjct: 371 KVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFLEKYSGIIWENHQAP 430

Query: 321 -------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                          L  WK+G TG PI+DAAMR LN +GW+HNR+RMI A +L K L++
Sbjct: 431 ANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRMRMIVAMYLTKHLMI 490

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  Q  + DP G FIRH
Sbjct: 491 DWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHTQSLKADPTGDFIRH 550

Query: 428 WLPELNNV 435
           W+PEL N+
Sbjct: 551 WVPELRNL 558


>gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972]
          Length = 568

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 130/546 (23%), Positives = 202/546 (36%), Gaps = 85/546 (15%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIYA 63
            +   R D R+TDN  L      +      VI +F   P Q    +          F+  
Sbjct: 23  AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +     Q G      + S+  D +E + S      + +L +NR       +RD  L
Sbjct: 83  SLKHLDT--VQLGGRLVCLRGSDC-DCLEVVRS--SGYDIKQLGFNRDITPFARKRDLQL 137

Query: 124 EKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLP 178
           E+    R +     +      PP  + N   + Y+V++PF +A++Q     +QA      
Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233
                 TG     ++    D   ++               L    +              
Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257

Query: 234 ----------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKS 276
                           RD      T+ LSP+L  G +S R+     L     +     + 
Sbjct: 258 LLRLASVASAKNYSAIRDDIPGDKTTHLSPHLKFGTISIREAMQVALLHLGKEHAFTRQL 317

Query: 277 GAFSWLNELIWR-----------EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
               + + L++            +          +    +PF+      +W  +     A
Sbjct: 318 IWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQWEWNDAEFTA 377

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           +K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE ++ +  +D D+
Sbjct: 378 FKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWYATVAVDYDV 437

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV  + IH    
Sbjct: 438 ANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVSVRTIHK-WD 496

Query: 446 WLDKNDLSLN-----------------------------------YPLPIVDHKKACHHT 470
              K     +                                   YP PIVD K+     
Sbjct: 497 VFCKEGRPADEGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPIVDLKQRTKWI 556

Query: 471 LNQYYA 476
           + +Y  
Sbjct: 557 VERYKK 562


>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
          Length = 611

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/445 (23%), Positives = 171/445 (38%), Gaps = 30/445 (6%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +        +       +  + KL      E     
Sbjct: 43  RFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAKLSIEYDSEPFGKE 98

Query: 119 RDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  ++K      +      S        I+        +     + LI  +   ++   
Sbjct: 99  RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 158

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEK 226
            +    +    TP +      Y   +++            ++P GE  AL  L +  + K
Sbjct: 159 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 218

Query: 227 VYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R            + LSPYL  G LS R  + +L + +  +         S  
Sbjct: 219 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLY 277

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M Q
Sbjct: 278 GQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 336

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +   
Sbjct: 337 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF 396

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455
              +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +N
Sbjct: 397 -QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVN 455

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP P+V+H +A    + +     +Q
Sbjct: 456 YPKPMVNHAEASRLNIERMKQIYQQ 480


>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
          Length = 547

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 209/500 (41%), Gaps = 56/500 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V  V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+              + L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 156

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             E+  + L+ K L+  VI +    +   P    L         +       + NL   D
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217
           + +    A+     V   +       P          G                      
Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274

Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                           + K+++  Y E R+ +     +++ SP+L+ G LSPR     +K
Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                 +       +  L ELIWR+++R + A Y +        P   + +W++D  L +
Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D
Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P 
Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509

Query: 445 SWLDKNDLSLNYPLPIVDHK 464
                     +Y   +V  K
Sbjct: 510 --------GASYIKQVVPLK 521


>gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
 gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
          Length = 430

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 208/468 (44%), Gaps = 44/468 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQK 70
           V  R DLR+ DN AL  A ++ + K+  +FI  P Q       S   + F+  SL+++ K
Sbjct: 5   VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L         +    +      +    +   V  +F N  Y    ++RD+ +++   ++
Sbjct: 64  EL---NGNLNVY----YGYPENIVSKLDM---VNAIFINEDYTPFAIQRDEKMKENALNK 113

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I       VLL             + +TPF     +  V           +        
Sbjct: 114 GIKFFSYPDVLLSAEEKKIKIG---RSFTPFYTKARELEVPKPQSVDKSINVERISNSLS 170

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            +    F    +   P+   G    L +L +        Y  +++         LSP+L 
Sbjct: 171 IDFLLTFK---KVESPLLKGGRPEGLMLLDREIDYSRKDYPAEKNYSM------LSPHLK 221

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR+ +++            K    ++  +L WR+FY  L+A+      G  F   
Sbjct: 222 FGTVSPREVYHK------------KISDQAFTRQLYWRDFYT-LLAYQNPYVFGHSFKTE 268

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            +KI+W        AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL K L VDWR
Sbjct: 269 YDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFLTKVLFVDWR 328

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE YF ++L+D D A NNG WQW ASTG D +  FR+F+P  Q +++DP+  FI+ ++ 
Sbjct: 329 LGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPEAKFIKDYVR 386

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           EL + P   IH  +           YP PIV+ ++        Y++ K
Sbjct: 387 ELRDYPPSVIHKVYLHKI-----TGYPSPIVNWRERVEMVKQVYFSTK 429


>gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 440

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 128/496 (25%), Positives = 196/496 (39%), Gaps = 80/496 (16%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS   +VW R+DLR+ DN AL  A       V+ +++         GI    + ++  SL
Sbjct: 1   MSTPTIVWFRDDLRLADNAALTWATER--GPVVGLYVHETV---GRGIGRAAAWWLRHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL    I           D  E +     +      +  R +  +     K    
Sbjct: 56  DALRESLPAPLIEL-------AGDPREIVPRLARELGAAVTWNRRYHLTDIDAEVKEATG 108

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + H     +    V              Y+V+TPF  A    L+ A    LPVP I   
Sbjct: 109 AVSHPGYLLTEPWDVRA----------TPYRVFTPFFNAARSVLLDAPPTPLPVPHITPA 158

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +           ++      GE  A   L++F      Y     +      TS L
Sbjct: 159 DIGPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIAASADYD----NNALDGVTSGL 214

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SP + W    +           GA+++  +L+WR+F  H     P +    
Sbjct: 215 SPHLRFGEISPAEVWLAAVDA----------GAWAFARQLLWRDFAWHRYYHVPDMATKN 264

Query: 306 PFIPWTEKIEWN----------------------KDSHLLQAWKQGYTGFPIIDAAMRQL 343
               +                             +    L AW+ G TG P++DA MR+L
Sbjct: 265 VRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLVDAGMREL 324

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G MHNR+RM++ S+L K+L + WR GEE+F   L+D D ASN   WQW A +G+D+ 
Sbjct: 325 WATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVAGSGDDAA 384

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFRIFNP  Q ++FDP G+++  WLP+                     + +Y  P+ D 
Sbjct: 385 PYFRIFNPLTQAEKFDPHGSYVARWLPD---------------------TADYSEPMADV 423

Query: 464 KKACHHTLNQYYAAKK 479
           K++    L  Y   K 
Sbjct: 424 KQSRLRALVAYDDIKN 439


>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
          Length = 685

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/548 (20%), Positives = 182/548 (33%), Gaps = 85/548 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     +    +F   P    +      +  F+      + K
Sbjct: 59  IYWFRTDLRLHDSPALKAALDLDPSVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 118

Query: 71  SLSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             +VT + + +  +     RD ++ +  +
Sbjct: 119 SITKVNSNSKLFVLR----EAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAAK 174

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +               I+        +     +A    L Q          +   G 
Sbjct: 175 DAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQLQAAGSKLGQVKKPIPAPKNLPDPGD 234

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL---------------------------- 219
           +  +      D        +   G++    I                             
Sbjct: 235 MPVNFDQDEPDTKPDFNSEIRTEGDKTYTKISGPKGDFAIETMEELGFPPATTPHRGGET 294

Query: 220 -----------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                       K                  Q T+ LSP+L  G LS R+ + R+K+  V
Sbjct: 295 LALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKDV-V 353

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
           D      S   S + +L++R+ Y    A    V       P+   I W+  S        
Sbjct: 354 DSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPETGL 413

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
                           + WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 414 VTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRGGCY 473

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW + +   S  YFR ++P   G+++D +G FIR
Sbjct: 474 IDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFSQ-YFRCYSPVAFGQKWDKKGEFIR 532

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471
            ++PEL N+  +YI+ P      +                    YP P+ D  K     +
Sbjct: 533 RYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGDGLNNVEEGTYPKPMFDFAKRRDVCI 592

Query: 472 NQYYAAKK 479
           +    A +
Sbjct: 593 SSMKVAYQ 600


>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
 gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
          Length = 787

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/492 (23%), Positives = 193/492 (39%), Gaps = 50/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           ++W RNDLR+ DN  +  A      +SD +V+ V++     ++       +       F 
Sbjct: 248 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 307

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI 114
              +  ++ SL   G         + D   E   +          Q  VT         +
Sbjct: 308 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 367

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQA 172
               R++         +          +   P  + +    +  V+TPFR  +       
Sbjct: 368 ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVR 427

Query: 173 D---------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
           D                         P      +  +      R  D   +     F  G
Sbjct: 428 DVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGG 487

Query: 212 EQNALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           E NAL  ++ +  E      Y E R+ +     +++L+P+L++G +SPR   + ++    
Sbjct: 488 ESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYES 547

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           + +       +  + ELIWR+F++     + +               W +D  +L+AWK 
Sbjct: 548 ERVENK--STYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEKILKAWKT 604

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G ++F   LLD D ASN
Sbjct: 605 GTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLLDYDTASN 664

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W   A+ G       R FN   Q K +DP G +I+ W+ EL  VP  YI  P+    
Sbjct: 665 WGNW--CAAAGMTGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIADPNQAPR 721

Query: 449 --KNDLSLNYPL 458
             ++ + LNYP 
Sbjct: 722 ELRDRIGLNYPN 733


>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
          Length = 525

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 205/456 (44%), Gaps = 26/456 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
           V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  F+ 
Sbjct: 42  VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 100

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E L S         +F +++    EV  ++L
Sbjct: 101 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 156

Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + L+   +    +    S +     +      +  VYT FRK++           +P+
Sbjct: 157 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 216

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233
                       ++P        P +    M  +G ++A          K      Y E 
Sbjct: 217 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 276

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +++ SP+L+ G +SPR  +  ++    + +       +  L ELIWR+++R
Sbjct: 277 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 334

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L     +        P     +W++D  L ++W+   TG+P+IDA M++L+T G+M NR
Sbjct: 335 FLSIKCGNSLFH-LGGPRNVNGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 393

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A   ND     R F+  
Sbjct: 394 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV-NDPRE-DRYFSIP 451

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            Q + +DP+G ++  WL +L  +P +  H P   + 
Sbjct: 452 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 487


>gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927]
 gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei]
          Length = 568

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 130/546 (23%), Positives = 201/546 (36%), Gaps = 85/546 (15%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIYA 63
            +   R D R+TDN  L      +      VI +F   P Q    +          F+  
Sbjct: 23  AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +     Q G      + S+  D +E + S      + +L +NR       +RD  L
Sbjct: 83  SLKHLDT--VQLGGRLVCLRGSDC-DCLEVVRS--SGYDIKQLGFNRDITPFARKRDLQL 137

Query: 124 EKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLP 178
           E+    R +     +      PP  + N   + Y+V++PF +A++Q     +QA      
Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233
                 TG     ++    D   ++               L    +              
Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257

Query: 234 ----------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKS 276
                           RD      T+ LSP+L  G +S R+     L     +     + 
Sbjct: 258 LLRLASVASAKNYSAIRDDIPGDKTTHLSPHLKFGTISIREAMQVALLHLGKEHAFTRQL 317

Query: 277 GAFSWLNELIWREFYR-----------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
               + + L++                       +    +PF+      +W  +     A
Sbjct: 318 IWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQWEWNDAEFTA 377

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           +K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE ++ +  +D D+
Sbjct: 378 FKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWYATVAVDYDV 437

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV  + IH    
Sbjct: 438 ANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVSVRTIHK-WD 496

Query: 446 WLDKNDLSLN-----------------------------------YPLPIVDHKKACHHT 470
              K     +                                   YP PIVD K+     
Sbjct: 497 VFCKEGRPADQGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPIVDLKQRTKWI 556

Query: 471 LNQYYA 476
           + +Y  
Sbjct: 557 VERYKK 562


>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
          Length = 549

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 203/500 (40%), Gaps = 47/500 (9%)

Query: 8   SVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           ++ +VW +  DLR+ D++ L  A  NS + V  VF      +         +SA +  F+
Sbjct: 22  TIGVVWFKCTDLRLEDHEPLALAHRNS-SHVAHVFCIDDRWFGHSRRGTRRMSAARCRFL 80

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +Q  L  KG      +    +                 ++ +      E     
Sbjct: 81  LESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHA 140

Query: 122 LLEKRL-------------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
            ++  L                 + + + +++  P     +    + +V+TPFRKA+  N
Sbjct: 141 AVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPN 200

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---------------MFPIGEQ 213
                   LP P   L   +  + +           +                 F  GE 
Sbjct: 201 CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGET 260

Query: 214 N--ALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
                     + ++ +  Y   R+       +S+ SP+L++G LSPR     +++   D 
Sbjct: 261 AGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYETDR 320

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQG 329
           +       +  + EL+ R+F+R+    Y +           +++  W  D+ LL AWK+G
Sbjct: 321 IAND--STYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAAWKEG 378

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   G+M NR R + ASF  KDL +DWR+G E+F   LLD D ASN 
Sbjct: 379 RTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDPASNY 438

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448
           G W + A  G D     R F+   Q + +D  G ++RHWLPEL  + T+ + +       
Sbjct: 439 GNWNYVAGVGFDPRE-DRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGGITAT 497

Query: 449 ----KNDLSLNYPLPIVDHK 464
                +  +  YP P+V  K
Sbjct: 498 LREVHSVPTSVYPDPVVPLK 517


>gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 2]
          Length = 439

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 145/471 (30%), Positives = 222/471 (47%), Gaps = 40/471 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69
           +     D R  DN  L  A  + D  +I +FI TPEQ +++   S     F+  SL +++
Sbjct: 4   IFIFHRDYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEELR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
                  I         + D+++ L        ++ + +N+ Y    + RD+ ++     
Sbjct: 63  DH-----IPLHIF----YGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCVK 113

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I C   +D +L P G         Y VYTPF+  ++++ +           I      
Sbjct: 114 KNINCVQIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSIPNTQNHPLKHLIYHKPLE 173

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S      DY           G +N L  L      +    ++         T+QLS Y
Sbjct: 174 HISYYSPNLDYYTYNPHNNVKGGRKNGLKYLHTNIDYEDQLSIK---------TTQLSAY 224

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP-F 307
           +  G LS R+ ++  K+E +               +LIWREFY ++  +YP++      F
Sbjct: 225 IKYGCLSIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVAF 271

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               +KI+W  +   L+ WK+G TGFP++DA MRQLN  G+MHNR R+I ++FL + L +
Sbjct: 272 QMKYDKIKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLGL 331

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFIR 426
           DWR+GE YF  QL+D D   NNG WQW +S G D+ PY  R+FNP +Q KRFDP   +I+
Sbjct: 332 DWRLGELYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYIK 391

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            W+PELN+VP   IH         D+   Y LPI+D+  A   +L  Y   
Sbjct: 392 EWIPELNDVPPNEIHQ-WDLHGDPDI---YILPIIDYTMARERSLQMYRTI 438


>gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 363

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 152/326 (46%), Positives = 205/326 (62%), Gaps = 6/326 (1%)

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMF 208
              Y+VYTP+ +     L  A + ++P P  +     +P  +P  FD    P +AI  ++
Sbjct: 34  GDCYRVYTPYARTCRDRLRTAPVVAVPPPRPQTPPDWSPDPLPDTFDGFARPSEAIRALW 93

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           P GE  A   L  F +  +  Y ++RD P++ GTS LSPYL+ GVLSP Q          
Sbjct: 94  PAGEAAAGDRLEAFTEGVIDAYKDERDFPSLPGTSCLSPYLAAGVLSPGQALRAALSANH 153

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             L   K+GA +W+NEL+WREFY+HL+A YPS+ M +P  P T  + W      L+AW+Q
Sbjct: 154 GELDSGKAGAATWINELLWREFYQHLLAAYPSLSMHQPMKPETAAVPWRDAPDDLRAWQQ 213

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+DGDLA+N
Sbjct: 214 GKTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAWFMAHLVDGDLAAN 273

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           NGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G F+R WLPEL ++  + IH P     
Sbjct: 274 NGGWQWSASTGADAVPYFRVFNPLSQSRRFDPRGVFLREWLPELADLDDKAIHDPSPMER 333

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQY 474
                  YP+PIVD  ++    L  +
Sbjct: 334 AA---AGYPMPIVDLAQSRLRALEAF 356


>gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 541

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 126/516 (24%), Positives = 198/516 (38%), Gaps = 44/516 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWR---QHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +  +   V+  F   P Q               F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ ++ +  +     + +V     +         R   
Sbjct: 87  ESLVDLDGA-AQLSNGLVCLRGSD-EECLRRIRDSGYEVKVLGFNEDYTPFALSRDRLLR 144

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVP 180
                   V      D  L P   +     Q Y V+TPF K  +       A+     V 
Sbjct: 145 DYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGNVK 204

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIP 237
            ++      P             +    P  + +        R  C E +  Y + RD  
Sbjct: 205 KVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLACVETLRRYADVRDDI 264

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288
           A   TS LSP++  G +S R+ W+   +         +   +     ++           
Sbjct: 265 AGDKTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 +  +          PF P  +   WN  +   +A+K+G TG P++DAA+R L  
Sbjct: 325 LNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNGGW W++  G D+ PY
Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADAQPY 444

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------------- 451
           FR FN   Q +RFDP   FI  W+PEL  VP   +H    +  K+               
Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDKATTNYSKKRDDM 504

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
                 + +YP+PIVD K A    + +Y    K  +
Sbjct: 505 GKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540


>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 561

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 182/500 (36%), Gaps = 61/500 (12%)

Query: 11  LVWLR-NDLRITDNK------ALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQS 58
           L+W R  DLR+ DN       AL  A  + D  V+ VF   P       W       R++
Sbjct: 12  LLWFRGTDLRLRDNLVVDAASALV-ASGSGDVDVLPVFCFDPRTFAASAWGTPKTGGRRA 70

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+L +++SL   G               + +  Y L+     +    +    E R
Sbjct: 71  RFLLESVLDLKRSLRDVGSDLLV----AVGKPEDVIPRYLLEGGTNVVLTQEEVHQEERR 126

Query: 119 RD----------KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
            D                           D +     +                KA ++ 
Sbjct: 127 VDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVESKATVRA 186

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----------- 217
              +        A            P   D PF   D           +           
Sbjct: 187 PAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNAVLPFEGGETA 246

Query: 218 -----ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
                    +  EK+  Y E R+ +     +S+LSP+L+ G +S R     +++   + +
Sbjct: 247 ALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVSARHVHREVRKYERERV 306

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQA 325
                  +  + ELIWR+F+ +    + +                     W  D   L+A
Sbjct: 307 E--NKSTYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGTWTGGAGPWRDDPAALKA 364

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           WK+G TGFP++DA MR+L   G+M NR R   AS+L  D  VDWR+G EYF S L+D D 
Sbjct: 365 WKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVDWRLGAEYFESALIDYDC 424

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+N G W   ++ G         FN   Q K +DP G +++ W+PEL +VP  ++  P  
Sbjct: 425 AANWGNW--VSAAGLTG-GRVNKFNIAKQTKDYDPDGRYVKTWVPELKDVPKGFVADPRR 481

Query: 446 WL------DKNDLSLNYPLP 459
                       + ++YP P
Sbjct: 482 MPGDVAKSAGCVVGVDYPAP 501


>gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 541

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 128/519 (24%), Positives = 196/519 (37%), Gaps = 50/519 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWR---QHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +  +   V+  F   P Q               F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRR 119
            SL+ +  + +Q        + S+     E L        + +V     +         R
Sbjct: 87  ESLVDLDGA-AQLSNGLVCLRGSD----EECLRRIHDSGYEVKVLGFNEDYTPFALSRDR 141

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSL 177
                      V      D  L P   +     Q Y V+TPF K  +       A+    
Sbjct: 142 LLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWG 201

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQR 234
            V  ++      P             +    P  + +        R  C E +  Y + R
Sbjct: 202 NVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLACVETLRRYADVR 261

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR------ 288
           D  A   TS LSP++  G +S R+ W+   +         +   +     ++        
Sbjct: 262 DDIAGDKTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLL 321

Query: 289 ------EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
                    +  +          PF P  +   WN  +   +A+K+G TG P++DAA+R 
Sbjct: 322 QGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGVPLVDAAVRC 381

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNGGW W++  G D+
Sbjct: 382 LTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADA 441

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----------- 451
            PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    +  K+            
Sbjct: 442 QPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDKATTNYSKKR 501

Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
                    + +YP+PIVD K A    + +Y    K  +
Sbjct: 502 DDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540


>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
          Length = 525

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 115/503 (22%), Positives = 190/503 (37%), Gaps = 38/503 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQ 67
           ++++W R  LRI DN AL +A  NS    IA+F+     ++  G      + F+   L  
Sbjct: 1   MNVLWFRRGLRIHDNPALLSALENSKD-FIALFVFDTT-FQDPGYKPYHMNGFLLECLHD 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      Q       +E        + + KL + +  E     RD   +   
Sbjct: 59  LNESLESVGTKLHVFQGC----PLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I      +  L     +  +       T      +   V    + +  P  +    
Sbjct: 115 SELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVGDPPKPVADPEWKGVKF 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-------------KFCKEKVYYYVEQR 234
           +T           F  +  +  IG        R              F           R
Sbjct: 175 LTLEPFESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFR 234

Query: 235 DIPAIQG---------TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
                              LS  +S+G +S R  + R+ E F  +             ++
Sbjct: 235 SGFYQPNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQI 294

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+++ + M+        +   P   +I W ++    + WK G TG+P IDA MRQLN 
Sbjct: 295 IWRDYF-YAMSRMNPKFDKEVDNPICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQ 353

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV- 403
            GWMH+ +R   A FL + DL ++W IG EY  +QL+D D + N+G W W +S+  + + 
Sbjct: 354 EGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFERLL 413

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
                 N  + GKR +P G +IR ++PEL N   +YIH P              +  +YP
Sbjct: 414 DCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPIDIQRTANCIIGQDYP 473

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
             +V H++     L      +++
Sbjct: 474 AQMVVHEEVLPRNLEWMKEFRQK 496


>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
 gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
          Length = 578

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 125/509 (24%), Positives = 199/509 (39%), Gaps = 71/509 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
             +VW RNDLRI DN+ L+ A  +S+A V+ V+   P  ++           A ++ FI 
Sbjct: 57  TAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTGALRAQFII 115

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++K+L ++G+              E L S         ++ +++    EV  +KL
Sbjct: 116 ECLADLKKNLMKRGLNLLIRH----GKPEEVLPSLAQAFAAHTVYAHKETCSEEVHVEKL 171

Query: 123 LEKRLQH----------------------------------------RVICKSFDDSVLL 142
           + K L                                                F  + ++
Sbjct: 172 MNKALHRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDFFDFRKARII 231

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYP 200
           P   +L   +   K        + ++L           VP+I   G          F   
Sbjct: 232 PFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVEDWGCVPSIHQLGLEEQKARGMRFLGG 291

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKV----YYYVEQRDIPAI-QGTSQLSPYLSIGVLS 255
             A               +              Y E R+       +++ SP+L+ G LS
Sbjct: 292 ESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYSTKFSPWLAQGSLS 351

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           PR  +  +K    + L          L  L+WR+ +R       +        P      
Sbjct: 352 PRFIYEEVKRYERERLAND--STHRVLFVLLWRDHFRFFSIKCGNSIFH-LGGPRNVAQR 408

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W++D  L ++W+ G TG+P+IDA M++L+  G+M NR RMI  SFLV+D+ VDWR+G E+
Sbjct: 409 WSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCSFLVRDMGVDWRMGAEW 468

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F + LLD D  SN G W + A  GND+    R F+   Q + FDP+G ++ +WLPEL  +
Sbjct: 469 FETCLLDYDPCSNYGNWTYGAGIGNDNRE-DRYFSIPKQAQSFDPEGEYVAYWLPELRKL 527

Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
                H P          ++Y   IV  K
Sbjct: 528 QKDKRHFP---------GMSYVERIVPLK 547


>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
 gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
          Length = 475

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 118/480 (24%), Positives = 214/480 (44%), Gaps = 29/480 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ--- 57
           MK        L+W R +LR+ DN+AL     NS+  ++ ++I    +W+++ +  ++   
Sbjct: 1   MKKKHR--KSLIWFRKNLRLKDNQALLEGVQNSEKYLL-LYIFDEREWKKNPVGLKRSSD 57

Query: 58  --SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
              +F++ S+L +++++  KG      +     D+ + +    ++ +   L+  ++    
Sbjct: 58  KKLNFLWQSVLDLKQNIEAKGGQLVMLK----GDAEDLIQRLSIENKFDALYAPKESGTE 113

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----L 169
           E   +K +E           F           I     ++  ++T FRK   +      L
Sbjct: 114 EFELEKSVEDFFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRKENEKQTGVRDL 173

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            ++         ++     +   I          ++                +  +++  
Sbjct: 174 FESPEDLSASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQLKE 233

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y   R+    +  +S+ SP+L++G +SP+  + ++K+   +         +  + ELIWR
Sbjct: 234 YKNTRNGLLGERYSSKFSPWLALGCISPKSIYYQVKQYEKERKKNQ--STYWMIFELIWR 291

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++  ++  + +    K  I   + ++W  D  L + WK   TG P IDA MR+LN  G+
Sbjct: 292 DYFHFVLKKFGAQLFQKEGIKG-KGVDWKWDLELFEKWKTAETGVPFIDANMRELNATGF 350

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFLVKDL +DWR+G  YF  QL+D D+ASN G W + A  GND     R 
Sbjct: 351 MSNRGRQNVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPRE-NRY 409

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVD 462
           FN   Q K++D +G ++RHW+PEL  +    IH      +     LN      Y  P+VD
Sbjct: 410 FNILSQAKKYDVKGDYVRHWIPELKEIEGFNIHKVSLMNEVALEKLNLIIPDIYLRPVVD 469


>gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 476

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 154/492 (31%), Positives = 236/492 (47%), Gaps = 26/492 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T  +  + W+R DLR++DN+AL AA     A VI VF+  P      G +  +  F
Sbjct: 1   MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDP-ILDSLGAAP-KWRF 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              +   +  +L  +G    Y +     D++E L +   +     ++++R Y+ ++V RD
Sbjct: 58  GLGA-AALDAALRDRGSRLIYRK----GDALETLRALVSETGAETVYWSRAYDPDQVARD 112

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K ++  LQ   +  +SF   +L+ P ++   +   YKVYTPF KA+    +     +   
Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDR 172

Query: 180 PAIRLTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                  P +       +    +     + P   IGE  A   L  F   +V  Y   RD
Sbjct: 173 IPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVGDYDRARD 232

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           IP I+GTS+LS  L+ G + P  CW   +    +       GA ++L EL+WREF  HL+
Sbjct: 233 IPGIEGTSRLSENLTYGEIGPATCWQAGQRALAEGKA----GAETFLKELVWREFAYHLV 288

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +          +   W  D+   + W++G TG   +DAAMR++   G MHNR RM
Sbjct: 289 WHTPHLIEKNW-RAEWDHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGTMHNRGRM 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+L K L+  WR+G+ +F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q 
Sbjct: 348 IVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRVFNPDTQL 407

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHT 470
            +FD   ++ R ++ E    P +   A     P SW    D +  YP PIV   +     
Sbjct: 408 DKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA--YPDPIVPLDEGRKRA 465

Query: 471 LNQYYAAKKQSL 482
           L+ Y  A+K + 
Sbjct: 466 LDAY-QARKDAA 476


>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 440

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/432 (24%), Positives = 179/432 (41%), Gaps = 25/432 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63
           V L W   DLR+ DN AL AA  +    ++ V++  P  +     +   + A +  F++ 
Sbjct: 2   VSLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQ 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +++ L   G          F    + +        + ++  +R     E  + K L
Sbjct: 60  SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +L   V  +    S+       L   L          +  ++     +   L +  + 
Sbjct: 116 RDKLPQTVFQQFETLSLFTE--GSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLT 173

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------ALHILRKFCKEKVYYYVEQRDIP 237
              P          + P    +P  PIG +              F   ++ +Y E R+  
Sbjct: 174 ALPPAPGYPQDNRGECP-AIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETRNAL 232

Query: 238 AI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+LSP+L+ G LS R+  + + +             +    EL+WRE++     
Sbjct: 233 DEADASSRLSPWLANGALSAREVADTISDYENQ--HVKNESTYWLWFELLWREYFYWYAL 290

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +    +  +   +K   +   H  +AW  G T +P+++AAM QL   G++ NR R I
Sbjct: 291 KHGASLFHRDGV-QQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGYISNRSRQI 349

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS LV +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q +
Sbjct: 350 VASCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKG-PRHFNLEKQAR 408

Query: 417 RFDPQGTFIRHW 428
           +FDP G F++ W
Sbjct: 409 QFDPDGDFVKRW 420


>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
 gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 123/526 (23%), Positives = 213/526 (40%), Gaps = 72/526 (13%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-------HGISARQSHFIY 62
            +VW RNDLR+ DN+ L+ A  NS++ V+ V+   P  ++              +  FI 
Sbjct: 37  AIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIV 95

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+ ++K+L ++G+              E + +         ++  ++    EV  +KL
Sbjct: 96  ECLVDLKKNLMKRGLNLLIRH----GKPEEIIPALAKDFASHTVYAQKETCSEEVNVEKL 151

Query: 123 LEKRLQHRVICKSF-----------------DDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           + K L+   +  S                      +     +      +  VYT FRK++
Sbjct: 152 VSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVYTQFRKSV 211

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR----- 220
                      + +             +P       Q  +  F      +  +       
Sbjct: 212 EARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSKGMRFLGGET 271

Query: 221 ---------------------KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258
                                  C + +  Y E R+ +     +++ SP+L+ G LSPR 
Sbjct: 272 AALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRF 331

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
            +  +K    +         +  L ELIWR+++R +   Y +        P   +  W++
Sbjct: 332 IYEEVKRY--EKGRLANDSTYWVLFELIWRDYFRFISFKYGNSIFH-IGGPRNVERRWSQ 388

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L  +W+ G TG+P+IDA M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 389 DQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 448

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D  SN G W + A  GND     R F+   Q + +DP+G ++ +WLP+L  +P +
Sbjct: 449 FLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQTYDPEGEYVAYWLPQLQELPKE 507

Query: 439 YIHAPHSWLDKNDLSLNYPLPIVDHKKAC---HHTLNQYYAAKKQS 481
             + P            Y   IV  K      H   ++  AA+K +
Sbjct: 508 KRNFP---------GKLYMEQIVPLKFGNPNGHRGQDRASAARKTN 544


>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
          Length = 571

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/498 (23%), Positives = 192/498 (38%), Gaps = 56/498 (11%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64
           +VW + +DLR+ D++ L  A   S A+V  VF      + Q       +SA +  F+  S
Sbjct: 26  IVWFKYSDLRLEDHEPLALAHRES-AQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLES 84

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-------FYNRQYEINEV 117
           +  ++  L ++G      +        + + +   +     +         +   E  +V
Sbjct: 85  VADLRARLRERGSDLLVRR----GHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADV 140

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA----LQMYKVYTPFRKALIQNLVQAD 173
                                  +        H        +    P      +  V++ 
Sbjct: 141 HAAVKSALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESK 200

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------------------- 214
                 P + L  P  P       D    +     P  E+                    
Sbjct: 201 YSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGG 260

Query: 215 -----ALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                       + ++++  Y   R+       +S+ SP+L++G LSPR     +++   
Sbjct: 261 ETAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYET 320

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWK 327
           D +       +  + EL+WR+F+R+      +           T +  W  D+  L+AWK
Sbjct: 321 DRIAND--STYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWK 378

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+P+IDA MR+L   G+M NR R + ASF  +DL +DWR+G E+F   LLD D AS
Sbjct: 379 EGETGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPAS 438

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W + A  G+D     R FN   Q K +D +G ++RHWLPEL  +PT  +  P    
Sbjct: 439 NWGNWNYVAGVGSDPRE-GRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGGIT 497

Query: 448 -----DKNDLSLNYPLPI 460
                     +  YP PI
Sbjct: 498 TMLRHMHAIPTSVYPDPI 515


>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
          Length = 531

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 175/451 (38%), Gaps = 30/451 (6%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   +  F+  SL  +  SL +        +        +       +  VT+L +    
Sbjct: 5   VGINRWRFLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLAFEYDS 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E     RD  + K  +   +    ++S        I+        +     +A+I  +  
Sbjct: 61  EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMEL 120

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILR 220
                  + + ++              Y   +++            ++  GE  AL  L 
Sbjct: 121 PKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLD 180

Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           K  + K +    +R            + LSPYL  G LS R  + RL E +  +      
Sbjct: 181 KHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTP 240

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              S   +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP I
Sbjct: 241 PL-SLYGQLLWREFFYTAATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWI 298

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA M QL   GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W 
Sbjct: 299 DAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWL 358

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------K 449
           + +      +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K
Sbjct: 359 SCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAK 417

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             + ++YP P+V+H +     + +     +Q
Sbjct: 418 CIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 448


>gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
 gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
          Length = 438

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 192/459 (41%), Gaps = 26/459 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              LVW R DLR  D  AL AA   S   ++ +++       +  ++AR+ +FI+ SL  
Sbjct: 4   PTTLVWFRQDLRTDDQPALQAAAR-SGRPLLGLYVW----PNEGMLTARRRYFIWQSLRD 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q  L++ GI     +     + ++ +       R  ++            R  L ++  
Sbjct: 59  LQARLAECGIPLHVRE----GNPVQAVVETAAHCRAAEVVCASDGAGQGALRAVLEKQGC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +             +   +          ++ A ++        + P P +     
Sbjct: 115 RLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPDLAAQQQ 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P N+               P GE  A   L +F     YY V  R +PA  G+SQLSP
Sbjct: 175 RLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLPRLPYYPVL-RSLPAQHGSSQLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ W                    W   L  REF+RH    YP V      
Sbjct: 234 HLVFGTLSVRRAWAAASNTPDAAA---------WQEALARREFWRHYFRQYPDVLRQDL- 283

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +     +  LL AW+QG TG+P+ DAAMR L   GW+ + LR   A+F  + L  
Sbjct: 284 --PEHRAAGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFFCRVLGG 341

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIR 426
            W+ G  +F  QLLD + A+N+G WQ AA  G       R  FNP +  ++ DP G FIR
Sbjct: 342 RWQDGAGWFARQLLDFEPAANSGNWQLAAGLG--GKQVERQPFNPVVWSQKLDPDGQFIR 399

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
             LP+L ++ ++ IHAP     + + +  YP P+VD++ 
Sbjct: 400 RHLPQLAHLDSRRIHAPWLAAAEVN-TNGYPAPVVDYRA 437


>gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 519

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 183/504 (36%), Gaps = 41/504 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + + WL+ +LR+ D++  + +        KV+ ++   PE  +Q  +S +   FI  +L 
Sbjct: 1   MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ +     G            ++++ LD     Q +TK++ +++   N   +       
Sbjct: 61  ELDRDFQSIGGKLL----QAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVAA 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +  + +            L             +++ +  DL     P      
Sbjct: 117 WCADHGVELLELAQNGIARGSQKPELFPPYFACSVSSK-LRDPIGTDLAERFAPLP--FP 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P  IP+                    L+        K Y +       A QG S++S
Sbjct: 174 SCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYPFQISSPNTAWQGCSRIS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------SWLNELIWREFYRHLMAFY 298
            YL+ G++S R+ +  +     D   +  +  F         +L+ L WR  Y       
Sbjct: 234 TYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFYLDRLSWRRQYMQTFEAS 293

Query: 299 PSVCMGKPFIPWTEKIEWNKDS----------------HLLQAWKQGYTGFPIIDAAMRQ 342
           P +        +    E +                       AWKQG TGFP IDAAMR 
Sbjct: 294 PELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTAWKQGLTGFPYIDAAMRF 353

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           LN  GW++ RLR    SF   +L +      EY  ++ LD +   ++   Q  A  G   
Sbjct: 354 LNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEPGIHHVIHQIIA--GTTE 411

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLS--LNY 456
                +++P  QG+  D  G FIR W+PEL +VP   +H           + ++   + Y
Sbjct: 412 FNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHDLAKTAFRLSKQAEIRGYMPY 471

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480
           P  IVDH+       ++    ++ 
Sbjct: 472 PEAIVDHRATAKKAKDRVSDLRRS 495


>gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 445

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 148/420 (35%), Gaps = 26/420 (6%)

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           ++ G            DS + +    L   V+ ++ + +          +  ++L     
Sbjct: 2   AELGQHLVV----KVGDSCDVIKKLHLDHDVSHVYAHEETGNLWTYHRDIAVQKLCQNHR 57

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
                     P   ++                + + ++         P          ++
Sbjct: 58  ----IALHEAPTNGVVRRLRSRDDWSKIRNARMAKKILPKPNTLNSFPPCSSDTLPDKND 113

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLS 250
                 +    I  +   G + A+  LR F   +   Y+     P       S+LS +L+
Sbjct: 114 ----PIFGNVPIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLA 169

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKP 306
            G LS R+    + +    L             ++ + L WR  +   +   P +     
Sbjct: 170 WGTLSVREVAQSIVKRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETHCM 229

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
              +        +    QAW  G TG+P +DA MR L   GW+  R+R +  SF    L 
Sbjct: 230 HPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLW 289

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+  E+      D +   +    Q    +G   +   R++NP  Q    DP+GTFIR
Sbjct: 290 LDWRVTGEHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIR 347

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL +VP ++IH P  W           L  +YP P+VD   +      Q  A +K 
Sbjct: 348 KWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 407


>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 503

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 115/510 (22%), Positives = 184/510 (36%), Gaps = 62/510 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----------ISAR 56
              L W R D R+  +     A      +V+ V+   P ++                 A 
Sbjct: 4   PTSLAWFRRDHRL--HDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAH 61

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ F   SL  ++ SL  +G      +          L           +  + +    E
Sbjct: 62  RARFRLESLADLRASLRDRGSDLVVRE----GRPESVLPEVAAAVDADFVTVHTRPTPEE 117

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172
            R +  +E  L+   +         L     L  AL          +  ++   +     
Sbjct: 118 SRVESAVETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAAEDAGTG 177

Query: 173 ------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
                              L    VP +    P                 +      ++ 
Sbjct: 178 DAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDDRG 237

Query: 215 ALHIL------------RKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWN 261
            L                 +  + +  Y E R+       +S+ SP+L+ G LSPR    
Sbjct: 238 VLPFDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYV-- 295

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           + + +  +         +  + EL WR+F++   A + S C  +  I     I+W +D  
Sbjct: 296 KAEVDRYEDRRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRDDA 355

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             + W  G TG P +DA MR+LN  G+M NR R   ASFL  DL +DWR G  YF ++L+
Sbjct: 356 QFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETRLV 415

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN G W + A  GNDS    R F+   Q  R+D    +++ WLPEL+ +P +Y H
Sbjct: 416 DYDPASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEYAH 473

Query: 442 APHSWLDKND------LSLNYPLPIVDHKK 465
            P              L ++YP P+VD   
Sbjct: 474 EPWKLSGAEQASYGVELGVDYPEPMVDFSD 503


>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
          Length = 526

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 173/477 (36%), Gaps = 33/477 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGISARQS 58
              +VWLR++LR+ DN  L  A       V+ V++     +               A+++
Sbjct: 10  PTTIVWLRDELRVHDNALLAEAAARG-GPVLPVYVLDDRVFDAAATSESGGSRKCGAKRA 68

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F   +L  ++ +L  +G      +        + L   C                +E R
Sbjct: 69  RFTLEALDDLRATLGARGSGLVVER----GRPADVLAGLCAAVGGDATVLCSDAACSEER 124

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK--------VYTPFRKALIQNLV 170
           +D+    ++                   +  H L                         +
Sbjct: 125 KDEAAVAKVAPLAKVWEGTLYHPEDLRGVAFHDLFTAWRTKVEKAGTRVRGDVFPKAATL 184

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---LHILRKFCKEKV 227
            A    +          +                D   P G + A         F ++++
Sbjct: 185 PAPPAGVDAKLAAPLPTLDALGYDAADAACDGRGDFFAPAGGETAALARLRKYVFEEDRL 244

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   RD +     +++L+P+LS G +SPR       + +           +  + EL 
Sbjct: 245 KDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACAD-YERTRGIKNKSTYWVVFELT 303

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+++      Y S       +    +  W  D   L+ WK G TG P++DA MR+L   
Sbjct: 304 WRDYFVFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAPLVDANMRELAAT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   AS+LV DL +DWR+G E+F   L+D    +N G W  AA      V   
Sbjct: 364 GFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHAAAGLSGGRVNR- 422

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPLPI 460
             FN   Q K +DP+G +++ W+PEL  VP      P S    +  +    +YP P+
Sbjct: 423 --FNILKQSKDYDPKGDYVKLWIPELAKVPAPQCFTPSSLSKADREAAGAGDYPAPL 477


>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M49 591]
          Length = 381

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 198/389 (50%), Gaps = 17/389 (4%)

Query: 87  FDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP-P 144
           + D +   +    Q    T +++N         RD+   +  +   I         L   
Sbjct: 2   YGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGS 61

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
             I+N + Q YKV+TP+ +       +  ++        L        +     +  +  
Sbjct: 62  QEIINQSGQPYKVFTPYYRXWQNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKY 121

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
             +       A   L +F ++++  Y   RD PA  GTS+LSP+L IG +  R  ++ ++
Sbjct: 122 QDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 179

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           +    L      G  ++L EL WR+FY  +   YP     +P      +IEW  +    Q
Sbjct: 180 QAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQ 232

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL DWR+GE+YF  QL+D D
Sbjct: 233 LWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYD 292

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ +LP+L +VP +Y+H P 
Sbjct: 293 AASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPW 352

Query: 445 SWLD------KNDLSLNYPLPIVDHKKAC 467
                        +  +Y  PIVDH K  
Sbjct: 353 KMPKNLQESVSCIIGTDYAQPIVDHAKQR 381


>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 550

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 112/498 (22%), Positives = 183/498 (36%), Gaps = 51/498 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI D++ LY A       ++ VF+      +     + +  F+ + L 
Sbjct: 1   MNRTVVWFRRDLRIADHEPLYRAARR--GLIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L  +G            D +E L     + +   ++    YE    R       +
Sbjct: 59  ALDEDLRSRGGRLILRS----GDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              R   K                      +        +        +      I +  
Sbjct: 115 ALTREGLKVRWF----------EPLGGTPDLVPYPDYRQLWYQSVRSPQIPTPQKIEVPP 164

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            ++   +P        +   + P G            F + K   Y  Q   P+   TS 
Sbjct: 165 DISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANATSG 224

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300
           LSPYL  G +S R+C   + +   D            A   L+ L W   +     + P 
Sbjct: 225 LSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRYLPQ 284

Query: 301 VCMGKPFIPWTEKIE-------------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI- 346
           + +   + P+                  W+ +    +AWK G TG+PIIDAA R L    
Sbjct: 285 LEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLKETG 344

Query: 347 GW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-- 402
           GW  ++ R+R I ASFL   + +DWR G  +FM  L+DGD   ++  +QWA   G     
Sbjct: 345 GWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDH--YQWAQQAGVTHCL 402

Query: 403 -VPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
              + RI+NP  +   R DPQG F+  WLPEL ++  + +  P            YP PI
Sbjct: 403 NKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPKV-------KGYPQPI 455

Query: 461 VDHKKACHHTLNQYYAAK 478
           +++ +A      +    +
Sbjct: 456 LNYAQARDRRTKRIDDLR 473


>gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256]
 gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis
           RB2256]
          Length = 457

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 26/463 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLR DLR+ D+         +   VI VFI   E      I A Q  +++ SL 
Sbjct: 1   MTASLLWLRQDLRVHDHP--ALLAAIAGGAVIPVFILDDETPGTWKIGAAQRWWLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G      +      +   L     +    ++     YE      ++    R
Sbjct: 59  ALGASLKKRGSKLILRR----GAAHTELARIARETGSRRIHATHAYEPWWKHSEE----R 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +     D + L  P SI+N     Y+V+TP+ + L+ ++     ++ P        
Sbjct: 111 LPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDHMPPTLPQAAPDAVPAPAS 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTS 243
                ++  +   P +                  +  ++    +  Y  +RD PA   TS
Sbjct: 171 WPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWLDAIGDYKARRDYPAQPATS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SPR  W+ + E           GA S+ +EL WRE   +L+   P    
Sbjct: 231 RLSPHLHFGEISPRALWHAIGERDDA-------GAESYRSELGWREHGINLVDQMPDYAD 283

Query: 304 GK--PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                                  AW +G TG+P++DA MR+L   GWMHNR+RM+TASFL
Sbjct: 284 RNGRELFDRFAWRTGADADRDFAAWTRGRTGYPVVDAGMRELWQTGWMHNRVRMVTASFL 343

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+DWR GE +F   LLD DL SN   WQ+ A TG D+  + RI +P +Q +RF   
Sbjct: 344 VKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFSRIMSPLLQCERF-AM 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
             ++R  +PEL ++    I A H    ++  +  YP P++ H+
Sbjct: 403 ADYVRAHVPELAHLSDAEIAASH---GRDSGAPGYPEPLIGHE 442


>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
 gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
          Length = 515

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 187/443 (42%), Gaps = 26/443 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---- 57
           K    M+  L W RNDLR+TDN  L AAC  S  +V+ VF   P  +R+     R+    
Sbjct: 39  KNGETMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPY 96

Query: 58  -SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            + F+  S+L +++ L    I    H    F    + L     +  VT L   R++  +E
Sbjct: 97  RAGFLRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDE 152

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLR 175
                 + + L   V         L  P  +   +   +  V+T FRK   +++      
Sbjct: 153 CLALDAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPE 212

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKVYY 229
             P     +  P     +P +                 F  GE  A   L+++  E  + 
Sbjct: 213 DTPARREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFL 272

Query: 230 YVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +R        + +++ SP+L+ G LS RQ +  +K    ++        +  + ELI
Sbjct: 273 STYKRTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKRYEQEVEKNR--DTYWLVFELI 330

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR++++++   +         I   E+ +W         W QG T    I+A M++L   
Sbjct: 331 WRDYFKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLT 389

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWM NR R  TAS+  +D+  DWR+G  +F   LLD D+ SN G W + ++ GND     
Sbjct: 390 GWMSNRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGNDPRN-- 447

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429
           R FNP  Q  R+D  G F R WL
Sbjct: 448 RKFNPEHQASRYDASGKFRRLWL 470


>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
 gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 453

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 194/457 (42%), Gaps = 29/457 (6%)

Query: 41  FIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
           +   P Q+ Q           +S+F+  S+  + +SL + G               + + 
Sbjct: 2   YCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLV----TTGLPEQVIP 57

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
               Q     ++Y+R+    E+  ++ L K+L    I         L     L  ++Q  
Sbjct: 58  QIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDL 117

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--------VTPSNIPRFFDYPFQAIDPM 207
                  +  I+    +       P+  L  P          P   P+        +   
Sbjct: 118 PDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQ 177

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                  A      +  +++  Y E R+ +     +S+ SP+L++G LSPR  +  +K  
Sbjct: 178 GGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY 237

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             + +          + EL+WR+F+R +   Y +    +  +   +   W +D    + W
Sbjct: 238 EQERVSND--STHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELW 294

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P++DA MR+LN  G+M NR R   ASFL K+L +DWR G E+F S L+D D+ 
Sbjct: 295 RSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVC 354

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G W + A  GND+   FR FN   Q +++DPQGT++RHWLPEL N+P   IH P   
Sbjct: 355 SNWGNWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLL 413

Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
                      L ++YP P V+  ++      +    
Sbjct: 414 SATEQKQWGVQLGVDYPRPCVNFHQSVE-ARRKIEQM 449


>gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
 gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
          Length = 435

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 216/471 (45%), Gaps = 41/471 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR  D+ ALY A  +    ++ +    P        S R+  + YA+   +
Sbjct: 1   MNLVWHRADLRTHDHPALYQAAQS--GPLVGLVNLDPHILE--PTSPRRRAWFYANTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ +++G          +    E L     +  V ++F    Y    + RD   E+ + 
Sbjct: 57  REAYARRGGTLLVR----YGTPWEVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   + + + PPG +L      Y VYTP+ K       +A+     +        +
Sbjct: 113 --GRIHWCEGNHVQPPGRLLKPDGTPYTVYTPYAKRWW---GEAERLGEGLLPPGRFPAL 167

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              ++         +  P+ P GE+ AL  L  F ++++  Y + RD    QG S+LSPY
Sbjct: 168 ERPDLELGQVPQEPSDVPLPPPGEEAALQALEAFLRDRLPTYHQTRDRLDGQGGSRLSPY 227

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            ++GVLSPR   +R      +       GA  W+ EL WR+F   L+   P +   + F 
Sbjct: 228 FTLGVLSPRLAVHRALHIGGE-------GARKWVAELAWRDFSADLLYHRPQMLH-QSFD 279

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P  + + W  D  L +AWK G TG  ++DAAMR+LN  G+M NR RM  A F VK  L+ 
Sbjct: 280 PRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVAQFAVKLALLP 339

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+  E++F ++LLDGD ASN  GWQWA   G D+ PYFR+FN   Q  + DP+G +++ W
Sbjct: 340 WQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQHDPEGVWLKRW 399

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           LPE    P Q                    P++D + A    L       K
Sbjct: 400 LPEWGGPPVQ--------------------PVIDLEAARQRYLAAAARIAK 430


>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
          Length = 540

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 173/444 (38%), Gaps = 30/444 (6%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  +  SL +        +        +       +  VT+L +    E     R
Sbjct: 21  FLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKER 76

Query: 120 DKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + K  +   +    ++S        I+        +     +A+I  +         
Sbjct: 77  DAAIIKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSS 136

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKV 227
           + + ++              Y   +++            ++  GE  AL  L K  + K 
Sbjct: 137 IVSQQMETCKVDIQENHDDMYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKA 196

Query: 228 YYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +    +R            + LSPYL  G LS R  + RL E +  +         S   
Sbjct: 197 WVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYG 255

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL
Sbjct: 256 QLLWREFFYTAATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQL 314

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W + +    
Sbjct: 315 RQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFF 373

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456
             +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++Y
Sbjct: 374 QQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDY 433

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480
           P P+V+H +     + +     +Q
Sbjct: 434 PKPMVNHAETSRLNIERMKQIYQQ 457


>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
          Length = 641

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 114/569 (20%), Positives = 181/569 (31%), Gaps = 102/569 (17%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R DLR+ DN AL AA   + +  I +F   P    Q  +   +  F+      
Sbjct: 7   PTVIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRFLLECQND 66

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +S  +          +    +               T L +    +     RD+ + K
Sbjct: 67  LSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122

Query: 126 RLQHRVIC---------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR- 175
                 +             D+ V    G       Q+ K        +    V A  R 
Sbjct: 123 LANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAPERI 182

Query: 176 ---------------------------------SLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
                                                    + GP    +IP   +    
Sbjct: 183 PDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQYNNIAGPKGDFSIPTLDELSID 242

Query: 203 AIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
                 P                   +                  Q T+ LSP+L  G L
Sbjct: 243 PSQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSL 302

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLN---ELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           S R+ W+ +++         K  +    N   +L++RE +    A    V          
Sbjct: 303 SVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQTRGNKIV 362

Query: 312 EKIEWNKDSH---------------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             + W+  S+                       + WK+G TGFP IDA MRQL   GW+H
Sbjct: 363 RFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQLKNEGWIH 422

Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL +    V W  G E F   L+D + ASN G W W + T   +  Y R +
Sbjct: 423 HLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFTQ-YNRCY 481

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------------LSLN-- 455
           +P   GK++DP+G FIRH++PEL +   +YI+ P     ++             +  +  
Sbjct: 482 SPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVTGDGMVEKDEE 541

Query: 456 -----YPLPIVDHKKACHHTLNQYYAAKK 479
                YP P+ D  +     + Q   A +
Sbjct: 542 TGLRAYPEPMFDFDERRQTCIAQMKEAYE 570


>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
          Length = 529

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 106/503 (21%), Positives = 175/503 (34%), Gaps = 34/503 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R  LR+ DN  L  A      +++ +F+  P   R   + A +  F+  SL  +  S
Sbjct: 8   VWFRKCLRLHDNAPLVEAAKRG-GRLLPIFVLDPHFARPEFVGAPRYRFLLESLADLDAS 66

Query: 72  LSQKGIVFQYHQCSNFD------------------DSIEWLDSYCLQQRVTKLFYNRQYE 113
           L ++G      +                       D+I W +       V +        
Sbjct: 67  LRKRGSRLCVVRGETEATLDGLFAGACDALPGVKVDAILWEEELVEPWGVARDARVAAAA 126

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                    +          +         P ++         +            +   
Sbjct: 127 KARGVAASAVAGGHLLFDPREVLGACGGKAPTTMPAMVKAAAALGAVPAPLDPPATLPPP 186

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              LP  ++     +     P                 E        K+ +       + 
Sbjct: 187 PDGLPDSSVPTLEAMGYEAPPAAAFGVAGGESAGLARLEAALARDGGKWARAFEKPKTKS 246

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREF 290
                   T+ LSPYL  G +S R    RL + +          +     +  E+ +   
Sbjct: 247 TKFDVDPSTTVLSPYLKFGCVSARLFRARLADVYAGGSHAQPPTSLLGQLYFREMAYANA 306

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            +H  AF  S       IPW +       +  L+AW+ G TG+P +DAAMRQL   GW+H
Sbjct: 307 LKHGAAFAASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIH 366

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G   F   LLD D A NN  W   A   + S P+FR++
Sbjct: 367 HLARHAVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVY 426

Query: 410 NPT---IQGKRF--DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPL 458
           +P     Q      D  G ++  ++PEL  +P +Y +AP +       +        YP 
Sbjct: 427 SPVPNHKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAPWTAPAAVLAAAGVVLGDTYPR 486

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
           P+VDHK      + ++  A++++
Sbjct: 487 PLVDHKVQSKDNIARFKEAQQRN 509


>gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
 gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 572

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/417 (33%), Positives = 211/417 (50%), Gaps = 18/417 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I      D+ ++PPG + +   + Y VY+P+ ++    L+                
Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312

Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     F              D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  ++   +AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF
Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 549


>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 173/435 (39%), Gaps = 19/435 (4%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL  +  SL +        +        +       + + +   +    E   
Sbjct: 29  RGRFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKECKFSTPTFEYDSEPFG 84

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             RD ++ K  +   +    ++S  L     +          T  R   I + ++   R 
Sbjct: 85  KERDAVIMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRP 144

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P    +         I   F    +    ++P GE  AL  L +  + K +    +R  
Sbjct: 145 APSVTRQQMEGCNSLCIASGFHSEIKG-PSIWPGGETEALARLDRHLERKAWVANYERPR 203

Query: 237 PAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                     + LSPYL  G LS R  + RLKE +  +         S   +L+WREF+ 
Sbjct: 204 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPL-SLYGQLLWREFFY 262

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                 P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+ 
Sbjct: 263 TAATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 321

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL + DL   W  G + F   LLD D + N G W W + +      +F  + P
Sbjct: 322 ARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCP 380

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
              G+R DP G ++R +LP L   P++YI+ P S  +      K  + ++YP PIV+H +
Sbjct: 381 VGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAE 440

Query: 466 ACHHTLNQYYAAKKQ 480
           A    + +     +Q
Sbjct: 441 ASRMNIERMKQTYQQ 455


>gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
 gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
          Length = 433

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 22/423 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ DN AL  A        + + +  P   +      R+  + Y +   +
Sbjct: 1   MNLVWHRADLRLHDNPALAEALRT--GPAVGLVVLDPNILQNTT--PRRRAWFYQNTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ + +G +        +    E L     +  V ++F  R        RD+ + + L 
Sbjct: 57  REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +      +  PG+I+      Y V+TP+ K        A    L           
Sbjct: 113 --GRLRWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWWA----APEPVLLEAPAHFPPFS 166

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P +          +  P+ P GE  AL  L  F ++K+ +Y + RD  A +G S+LS Y
Sbjct: 167 LPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGVSRLSYY 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            ++GVLSPR    +  +   +       GA  W+NEL WR+F   L+   P +   + F 
Sbjct: 227 FTLGVLSPRLAARKALQVGGE-------GARKWVNELCWRDFSGDLLYHRPQMMT-QAFD 278

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P  E + WN DS + +AW  G TG P++DA MR+L   G++ NR RM+ A F VK  L+ 
Sbjct: 279 PRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAVKLALLP 338

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+  E  F + LLDGD ASN  GW WA   G D+ PYFR+FN   Q +  DPQG +++ W
Sbjct: 339 WQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQGLWLKRW 398

Query: 429 LPE 431
           +PE
Sbjct: 399 VPE 401


>gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa]
          Length = 484

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 203/443 (45%), Gaps = 24/443 (5%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 ++  SL  + +SL   G      +    D +++ L       +  K+ +N  Y+
Sbjct: 3   GRVSRWWLKQSLSHLDQSLKSLGAGLVMIKT---DSTLKALLECVNAVQAEKVVFNHLYD 59

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  ++++L    I     +  L   P  I + +   +  + PF    +Q  ++ 
Sbjct: 60  PVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMKT 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                P   I   G V   +I +              +   +  G   +   L +F +  
Sbjct: 120 YSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVENN 179

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282
           + +Y + R    +  TS LSPY+  G LS R+ +   + +      +  I  +  A  +L
Sbjct: 180 LIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFFL 239

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             + +RE+ R+L   +P   + +P +   +   WN D  + +AW+ G TG+P++DA MR+
Sbjct: 240 KAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMRE 298

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+HN++R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D 
Sbjct: 299 LWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDG 358

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
               R+ +P IQG ++D +G ++R WLPEL  +PT++IH P +           +L  NY
Sbjct: 359 HELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNY 418

Query: 457 PLPIVDHKKACH---HTLNQYYA 476
           P PI+D   A       + + + 
Sbjct: 419 PKPIIDIDLAREQLTQAIFKMWE 441


>gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus]
          Length = 579

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/447 (23%), Positives = 175/447 (39%), Gaps = 30/447 (6%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL  +  SL +        +        +       +  VT+L +    E   
Sbjct: 61  RRLFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFG 116

Query: 117 VRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RD  +++   +  V   + +   L     I+    Q   +     +A+I  +      
Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPRKP 176

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCK 224
              V + ++              Y   +++            ++  GE  AL  L K  +
Sbjct: 177 VGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLE 236

Query: 225 EKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            K +    +R            + LSPYL  G LS R  + RL + +  +         S
Sbjct: 237 RKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-S 295

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              +L+WREF+       P     +   P   +I W+++   L  W +  TGFP IDA M
Sbjct: 296 LFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEAKTGFPWIDAIM 354

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W + + 
Sbjct: 355 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS- 413

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + 
Sbjct: 414 AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIG 473

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YP PIV+H +     + +     +Q
Sbjct: 474 VDYPRPIVNHAETSRLNIERMKQIYQQ 500


>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
          Length = 532

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 106/452 (23%), Positives = 176/452 (38%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                 + F+  SL  +  SL +        +        +       +  VT+L +   
Sbjct: 4   PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYD 59

Query: 112 YEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            E     RD  +++   +  V   + +   L     I+    Q   +     +A+I  + 
Sbjct: 60  SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219
                   V + ++              Y   +++            ++  GE  AL  L
Sbjct: 120 LPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179

Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            K  + K +    +R            + LSPYL  G LS R  + RL + +  +     
Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST 239

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               S   +L+WREF+       P     +   P   +I W+++   L  W +G TGFP 
Sbjct: 240 PPL-SLFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPW 297

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      
Sbjct: 358 LSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP PIV+H +     + +     +Q
Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448


>gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
          Length = 546

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 118/492 (23%), Positives = 193/492 (39%), Gaps = 50/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           ++W RNDLR+ DN  +  A      +SD +V+ V++     ++       +       F 
Sbjct: 7   VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI 114
              +  ++ SL   G         + D   E   +          Q  VT         +
Sbjct: 67  LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 126

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQA 172
               R++         +          +   P  + +    +  V+TPFR  +       
Sbjct: 127 ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVR 186

Query: 173 D---------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
           D                         P      +  +      R  D   +     F  G
Sbjct: 187 DVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGG 246

Query: 212 EQNALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           E NAL  ++ +  E      Y E R+ +     +++L+P+L++G +SPR   + ++    
Sbjct: 247 ESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYES 306

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           + +       +  + ELIWR+F++     + +               W +D  +L+AWK 
Sbjct: 307 ERVENK--STYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEKILKAWKT 363

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G ++F   LLD D ASN
Sbjct: 364 GTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLLDYDTASN 423

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W   A+ G       R FN   Q K +DP G +I+ W+ EL  VP  YI  P+    
Sbjct: 424 WGNW--CAAAGMTGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIADPNQAPR 480

Query: 449 --KNDLSLNYPL 458
             ++ + LNYP 
Sbjct: 481 ELRDRIGLNYPN 492


>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 17/425 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            + W R+DLR+ DN AL A     D +++ VFI  P  ++        +  ++  F+  S
Sbjct: 12  GIFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQS 70

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L ++G      +     +++E LD+         +       + E ++ + ++
Sbjct: 71  LSELQRHLQEQGQQLFVLE----GETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRVK 126

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +   + +  +    S+  P  + L   ++         +  +++L  A     P      
Sbjct: 127 QGNPNTLFIQENGHSLFQP--ATLPFEIEYLPASFTPFRKRVEDLQVAVALPAPTALPPA 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243
                 S+           +          A      F    +  Y + R+       +S
Sbjct: 185 PDLAWLSSKNVNPPKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYKQTRNGLDGWDYSS 244

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L+ G LS RQ +  L+    +         +    EL+WRE+++  +  Y S   
Sbjct: 245 KLSPWLANGCLSVRQVFTELRRYESEYEKND--STYWLYFELLWREYFQWHLFKYQSKLF 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                  T  +           W QG T +PI++A M+QLN  G+M NR R + AS LV 
Sbjct: 303 QFSGTQDTRPLTTFVALRFAM-WCQGETPYPIVNACMKQLNHTGYMSNRGRQLVASCLVN 361

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L VDWR G  YF  QL+D D+ASN G WQ+ +  G D   + R F+   Q +++DP G 
Sbjct: 362 ELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGHRR-FDLAKQAQQYDPNGE 420

Query: 424 FIRHW 428
           F+R W
Sbjct: 421 FVRQW 425


>gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 440

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 25/430 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           L W   DLR+ DN +L AA  +    ++ +++  P  +     +   +   +  F++ SL
Sbjct: 4   LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++SL   G          F +    +        + ++  +R     E  + + ++ 
Sbjct: 62  MALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKD 117

Query: 126 RLQHRVICKSFDDSVLLPP------GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           RL   V  +    S+            + +   Q  K          + L    L +LP 
Sbjct: 118 RLPKAVFQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPP 177

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PA 238
           P                  +P Q +          A      +    +  Y E R+    
Sbjct: 178 PPGFPEDNRGDCPPIPEPVHPLQFMGGEAAG---LARLQEFLYGNHSIDRYKETRNALDT 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              +S+ SP+L+ G LS R+    + E   +         +    EL+WRE++      +
Sbjct: 235 WDASSKFSPWLANGCLSVREVAETITEY--EASETKNESTYWLWFELLWREYFYWYALKH 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +    +  +    +       H  +AW QG T +PI++AAM QL   G+M NR R + A
Sbjct: 293 GANLFRRDGVQRKRRH-GTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQLVA 351

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S  + +L +DWR G  +F  QL+D D+ SN G WQ+ A  G D     R FN   Q +++
Sbjct: 352 SCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQQY 410

Query: 419 DPQGTFIRHW 428
           DP GTFI  W
Sbjct: 411 DPTGTFIDRW 420


>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
          Length = 532

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 106/452 (23%), Positives = 176/452 (38%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                 + F+  SL  +  SL +        +        +       +  VT+L +   
Sbjct: 4   PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYD 59

Query: 112 YEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            E     RD  +++   +  V   + +   L     I+    Q   +     +A+I  + 
Sbjct: 60  SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219
                   V + ++              Y   +++            ++  GE  AL  L
Sbjct: 120 LPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179

Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            K  + K +    +R            + LSPYL  G LS R  + RL + +  +     
Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST 239

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               S   +L+WREF+       P     +   P   +I W+++   L  W +G TGFP 
Sbjct: 240 PPL-SLFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPW 297

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      
Sbjct: 358 LSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP PIV+H +     + +     +Q
Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448


>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
           morsitans]
          Length = 536

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 178/513 (34%), Gaps = 43/513 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MSV+++W R+ LR+ DN AL  A         ++ +FI   E          +  F+  S
Sbjct: 1   MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +      +       Q     +             + KL   +  E    RRD  ++
Sbjct: 61  LRDLDDQFRCQRGRLYTFQ----GNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                  I      S  L     +          T         ++    R       + 
Sbjct: 117 VLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIGLPPRPAENANWKG 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE------------------- 225
              +  +         F  I                   K                    
Sbjct: 177 VDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEG 236

Query: 226 ----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275
               + YY   Q +   ++    +SP+L  G LS R+ +  + + F D+           
Sbjct: 237 EAFKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQI 296

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                   +LIWRE++  +    P     +             +   L+ WK G TGFP+
Sbjct: 297 MSGAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAPVNDEQLENWKLGKTGFPL 356

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           +DAAMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G W W
Sbjct: 357 VDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVCAGNWMW 416

Query: 395 AASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447
            +S+  + +     +  P    KR DP G +I+ ++PEL +VP +YIH P          
Sbjct: 417 VSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMPLSEQKR 476

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            K  +  +YP  I+D  KA    +      ++ 
Sbjct: 477 SKCIIGEHYPKRIIDFVKAAESNMTAMRNLRQD 509


>gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
 gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
          Length = 614

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 101/520 (19%), Positives = 171/520 (32%), Gaps = 62/520 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  +F   P    +      +  ++      +  
Sbjct: 7   IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDLSA 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S++           +    +             +VT L + +  +    +RD++++K  Q
Sbjct: 67  SITNLNPRSKLFVLR----EAPQSLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAAQ 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +              +I+        +     + +   +           A+   G 
Sbjct: 123 AAGVKVITRYGRTLWDSDAIVKANGGEPTMSMARLRTVGAKVGSIPRPIPAPKALPDPGE 182

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +         D            G++ A   +     +     +E+     +      +P
Sbjct: 183 MPLDFNLDLPDVGQDYNAKWRSEGKEKAYGAIAGPNGDFAIETLEE-----LGYPPATTP 237

Query: 248 YLSIGVLSPRQCWNRLK------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           Y     L+ R+    ++                     S   +L++R+ Y    A     
Sbjct: 238 YKGGESLALRELDAIIENQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIGPC 297

Query: 302 CMGKPFIPWTEKIEWNKDSH-------------------------LLQAWKQGYTGFPII 336
                       I W+  SH                           + W+ G TGFP I
Sbjct: 298 FSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPWI 357

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA MRQL   GW+H+  R   A FL +    V W  G + F   LLD + A N G WQW 
Sbjct: 358 DALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQWL 417

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450
           + T   S  YFR ++P   GK++DP GTFIR W+PEL ++  +YI+ P    +       
Sbjct: 418 SCTAFFSQ-YFRCYSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRAG 476

Query: 451 ------------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                         S  Y  P+ D  +     +     A 
Sbjct: 477 VVMVSEGGVGGGGASGTYFTPMFDFDERRRVCMRLMKQAY 516


>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
 gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
          Length = 419

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 182/455 (40%), Gaps = 38/455 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +V    DLR++D+ AL+AA   +D +V+ +F+  P   R    +  +  ++  +L 
Sbjct: 1   MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVRVS--ARNRIAYLLEALA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++  L ++G      Q     +++        +     ++ +       VRR + L + 
Sbjct: 58  ELRGLLRERGGELVVRQGDTVAETV----RIVAEAGAQAVYLSADVSAAAVRRARQLTEA 113

Query: 127 LQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           ++             ++PPG++       Y+++TP+  A      ++   +     +   
Sbjct: 114 VRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVRLPEG 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P             + P    G         +                     S+ 
Sbjct: 174 LVPGPLPGAELIRLGTGVLAPQREQGGPRTARERIRAWL------------AQPNQDSRF 221

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G LSP +     +E     L+  +     + ++++          + P     +
Sbjct: 222 GCHLHFGCLSPLEVALVAREHPRGALLLRQLALRDFHHQVLQAFPRLPRADYRPRPIQWR 281

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                        D     AW  G TG PI+DA MRQL   G++  R+RM+TA++L + L
Sbjct: 282 D------------DDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYLTQVL 329

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G ++F S L+DGD+A+N G WQ  A TG    P  RI N   Q +R+DP G ++
Sbjct: 330 RIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPSGDYV 388

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           R ++PEL ++    +H P            YP P+
Sbjct: 389 RRFVPELRSISGSAVHHP-----PVPRPGGYPPPL 418


>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
          Length = 525

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 113/518 (21%), Positives = 201/518 (38%), Gaps = 45/518 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59
           M+        L W R  LR+ DN+ L AA  +S+A V  V+    E  R    I   +  
Sbjct: 1   MERNLTRHRTLHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIR 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + ++L + G      +     ++   + ++C +  +T++ Y R  E+   + 
Sbjct: 60  FLLESLTDLDENLRKIGTRLFVLR----GNARTAIKTFCREYEITQMTYMRDAEVFYRQL 115

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +  + + +  R I  +S     L  P  I++       +      ++I +L    L +  
Sbjct: 116 EAEILEEVNRREIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSLDVPALPAPT 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYP----------FQAIDPMFPIGE-------QNALHILRK 221
           V A                 Y                  +P GE       +  +     
Sbjct: 176 VTAEMFKSCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTL 235

Query: 222 FCKEKVYYYVEQRDIPA------------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           +   +     +  +                  T+ LSPY+++G +SPR  W+  K     
Sbjct: 236 YEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEK 295

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           +    +        E  +   Y                I W++     + +  ++ +KQG
Sbjct: 296 MRTTVQ--GQMIYREFFYTVAYTVNNFTRIEGNRICKDIKWSDPKTNERAAEWIEKFKQG 353

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDAA+RQ+ T GW+ +  R   ASFL    +   W +G++ F   LLD D A N
Sbjct: 354 MTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLDADYALN 413

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL- 447
            G + W   +   +    +  +P    +++D  G+FIR + PEL N+PTQYI AP     
Sbjct: 414 AGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICAPWKAPQ 473

Query: 448 -----DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 +  + ++YP P+++        LN+  A  +Q
Sbjct: 474 DVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511


>gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
 gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 204/484 (42%), Gaps = 46/484 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ D+ AL AA   + A  ++ +F+  P      G    +  F+ + L ++ 
Sbjct: 34  VYWFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPR--AGRGAGPNRWQFLASCLEELD 91

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
           + L     + +             +  +  +     +  + +      RRD+++ +RL  
Sbjct: 92  RQLGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAA 151

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   D    + PG +       Y+V++ F +A +   V+A           L    
Sbjct: 152 EDRRLLLLDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAPYERPAARFDALVSDG 211

Query: 189 TPSNIPRFFDYPFQAIDPMFP------------IGEQNALHILRKFCKEKVYYYVEQRDI 236
             +++       +      +              GE+ A+  L +FC+  +  Y   RD 
Sbjct: 212 EATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRHRDR 271

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS+LS  L  G L PR                       +L EL WREF+  ++ 
Sbjct: 272 PDMAGTSRLSADLHFGTLHPRTV------RDAARKTVEGPALDRFLAELAWREFFADVLW 325

Query: 297 FYPSVCMGKP--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             P                 +  +      AW +G TG+ ++DA MRQL + GWMHNR+R
Sbjct: 326 HRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHNRVR 385

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M++ASFLVKDL +DWR G  +F+  L+DGD+ASNN  WQW A  G D+ PY RIFNP  Q
Sbjct: 386 MVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNPDRQ 445

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +RFDP G + R +     ++P +                     IV+HK      L ++
Sbjct: 446 AERFDPDGAYRRRYC---ADLPARL-------------------SIVNHKAERAEALTRW 483

Query: 475 YAAK 478
            AAK
Sbjct: 484 AAAK 487


>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 277

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/277 (40%), Positives = 155/277 (55%), Gaps = 10/277 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  GE+ A   LR F ++++  Y E RD PA   TS LSP+L++G +SP + W+  +   
Sbjct: 2   WTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLS 61

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
             L          +  E+ WR+F  HL+A +P +          ++ EW        AW 
Sbjct: 62  KHLPAA---DIVHFRKEIAWRDFSYHLLAHFPRLATANW-EDRFDRFEWGSAEEDFNAWS 117

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KDL+VDWR GE +F   L+D D A+
Sbjct: 118 RGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPAN 177

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N   WQW A +G D+ P+FR+FNP +QG++FDP G F+R  +PEL  +  +YIH P    
Sbjct: 178 NAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAP 237

Query: 448 ------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YP P+VDH  A    L  Y A +
Sbjct: 238 KSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 274


>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-208]
          Length = 246

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 113/248 (45%), Positives = 148/248 (59%), Gaps = 13/248 (5%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LS YL  G +S R  W  L+E           G  ++  EL WR+ + +++   
Sbjct: 1   MDKTSHLSRYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRD-FYNMIYVS 53

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITA
Sbjct: 54  FPNQKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITA 113

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLL+DWR GE+YF   L+D D ASN GGWQWAAST  D+VPYFRIFNPT Q ++F
Sbjct: 114 SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKF 173

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G FIR ++ EL N+P +YIH P    +         L  +YP P+VDHK+     + 
Sbjct: 174 DPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIA 233

Query: 473 QYYAAKKQ 480
           +Y  +K+ 
Sbjct: 234 RYEFSKEH 241


>gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
 gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
          Length = 436

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 117/425 (27%), Positives = 178/425 (41%), Gaps = 29/425 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLRI DN AL  A  ++D  V+ +++A         +   Q  F+  SL 
Sbjct: 37  MRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVAD----DSPPLPPNQRRFLVESLT 91

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++SL + G      +     D +E     C       +     Y     R  + L + 
Sbjct: 92  DLRESLRRLGGDLLVRR----GDPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAEA 147

Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   +        +++ P           YKV+TP+ ++      + +      P    
Sbjct: 148 AEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHE---APQAIR 204

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  + P     P +        G + A         ++   Y    D  A   T++
Sbjct: 205 LPADVTGDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWIDREPDYPAIHDDLAADDTTR 264

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  G +SP                       + + +L WR+FY  ++  +P +   
Sbjct: 265 LSGYLRFGCVSPLVVAAD------------PRTPEALVRQLCWRDFYHQVLHGFPRLATD 312

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W  D   L+AW+ G TG P++DA MRQL T GWMHNR RM+ AS+L KD
Sbjct: 313 NYRPGARD--AWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVAASYLTKD 370

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR G  +F   L+D D+A+N G WQW A TGNDS PY R FNP  Q +R+DP+  +
Sbjct: 371 LGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQRYDPRHEY 429

Query: 425 IRHWL 429
              WL
Sbjct: 430 RDRWL 434


>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
 gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Marinobacter aquaeolei VT8]
          Length = 440

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/426 (23%), Positives = 177/426 (41%), Gaps = 18/426 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65
           L W   DLR+ DN AL AA  +    ++ VF+  P     ++++   +   +  F++ SL
Sbjct: 4   LYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++SL   G          + +    L     +  V +L  +R     E  + + L+ 
Sbjct: 62  MALERSLRPMGQRLHI----AWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALKT 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           RL      +     +       +  A          ++          LR   V A+   
Sbjct: 118 RLPEVTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALPPP 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRDI-PAIQGT 242
                 N  +    P       F  GE+   A      F + ++  Y E R+       +
Sbjct: 178 PGFPEDNRGQCPPIPEPIHRSPFTGGEEAGLAQLQAFVFGQHRIANYKETRNALDDWGSS 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+ SP+L+ G LS R+    +++   +         +    EL+WRE++      +    
Sbjct: 238 SKFSPWLANGCLSAREVVAAIEQY--ERQHTRNDSTYWLWFELLWREYFYWYALKHGGRL 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +   ++       H  +AW +G T +PI++AAM QL   G++ NR R + AS L+
Sbjct: 296 FSRDGV-QRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLRETGYISNRARQLVASCLI 354

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q +++DP+ 
Sbjct: 355 NELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG-LRQFNLDKQAQQYDPEE 413

Query: 423 TFIRHW 428
            F+  W
Sbjct: 414 AFVHRW 419


>gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans]
          Length = 709

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 175/549 (31%), Gaps = 86/549 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA       +  ++   P    +  +   +  ++      + K
Sbjct: 53  IYWFRTDLRLHDSPALKAALDLKPDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQKDLSK 112

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             ++T L + +  +     RD+ + +  +
Sbjct: 113 SITKVNPQSKLFVIR----EAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQVMELAK 168

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +            P  ++        +     +A  + + Q         ++   G 
Sbjct: 169 TAGVEVVVKTGRTLYDPDELVRQNHGKPTMSINQVQAAGKKIGQIPRPIPAPKSLPGPGK 228

Query: 188 VTPSNIPRFFDYPFQAIDPMF------------PIGEQNALHIL---------------- 219
           V                D               P G+     +                 
Sbjct: 229 VDFDFHQEKPSNSPDINDAQRNTDEASYSSLAGPNGDFAVPTMKELGLKLATSTHRGGET 288

Query: 220 -----------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                       +                  Q T+ LSP+L  G LS R+ + R+++   
Sbjct: 289 LALEALEKIIANEEYTATFEKPKTAPTAFEPQATTLLSPHLHFGSLSCREFYWRVQDVVD 348

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
               K      S   +L++R+ Y    A            P    I W+  S        
Sbjct: 349 RFKGKASQPPTSLTGQLLFRDMYFGAQAALGYSFSQTYNNPQCRFIPWHLPSKIDIKSSM 408

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
                           + WK+G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 409 TTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQLKREGWIHHLGRHAVACFLTRGGCY 468

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW + T   +  +FR ++P    +++D +G F++
Sbjct: 469 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FFRCYSPIAFPQKWDKEGEFVK 527

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDL-----------------SLNYPLPIVDHKKACHH 469
            ++PEL     +YI+ P      +                      YP P+ D       
Sbjct: 528 RYVPELAKFDKKYIYEPWKAPIADQKKWGCRIEGDGLSVAKGEGETYPKPMFDFPTRRDI 587

Query: 470 TLNQYYAAK 478
            L+    A 
Sbjct: 588 CLDGMKNAY 596


>gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 616

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 179/502 (35%), Gaps = 45/502 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R  LR  D  AL  A    D  V  + +  P  +   G++   +  F + ++  + 
Sbjct: 48  VVWHRKHLRTADQLALTRAVSGGDV-VCPLLVFDPAFYGDGGLACDARIRFFHEAVASLD 106

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--------------------------- 102
           +  +               + +       L +                            
Sbjct: 107 RLYAAAPAPTVTRTAEAPRERLAATTPLSLNETREDDRTAEDSLSGASSPGLTIGYGSPP 166

Query: 103 -VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
            V + F N+ + I  +        + +   +     +S+    G  L    +  +     
Sbjct: 167 TVLQRFANKGWTILTMATPTSRYGKRRDDRVRDVCGNSIEFISGDGLVRGQEWSRTNWQT 226

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                 N              +       +       +       + P G         +
Sbjct: 227 HVETWLNEAPHTPAWSTADTTQFVLETGITPAAIDAAFDISPSKTLVPTGTHRRAAERLR 286

Query: 222 FCKEKVYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
              E+++ Y      P    + +S LSPYL+ G+LS RQ +  + E+  +       G  
Sbjct: 287 SFVERIHSYPGNISAPQDAREASSGLSPYLNFGLLSVRQVYQSVSEQAPE-----CRGRQ 341

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            + + L+W   Y   +  +P          + +    + D  L+QAWK G TGFP++DAA
Sbjct: 342 MFTDRLVWNLHYNQKLVDWPGWTDTAVNPVFEDFNRDHHDPELVQAWKGGETGFPMVDAA 401

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L   GW++ R+R + ASF V  L   W IG +++   L+D D+  N   WQ  +  G
Sbjct: 402 MRCLRQTGWLNFRMRAMCASFFVHILQQPWWIGADWYHHHLIDSDVGINYTQWQ--SQAG 459

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453
               P  R++NP  Q +  DP G +I  WLPEL  +P  ++  P              + 
Sbjct: 460 TIGKPVQRVYNPRKQVRDHDPDGDWICRWLPELAPLPNTFLDRPERTPLAVQTDCGVTIG 519

Query: 454 LNYPLPIVDHKKACHHTLNQYY 475
            +YP P+VD         ++Y 
Sbjct: 520 DDYPRPVVDFDARREAFWSRYE 541


>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 434

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 180/436 (41%), Gaps = 21/436 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFI 61
           M   +VW + DLR+ DN+ L  A   SD ++I V+    + ++            ++ F+
Sbjct: 1   MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTGNFRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  +L + G      +          L     Q    K+F  R+    E + + 
Sbjct: 60  LESLNDLDTNLRKLGSGLIVVR----GKPETELYKIVKQYEAFKVFAKREVAYEEQQTEA 115

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQAD 173
            +EK +       +SF  S L     +      + +V+T FRK + +           A 
Sbjct: 116 RVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEKESSIRSVFQKPAH 175

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           ++S  +P +RL         P   D                 L       +   +Y   +
Sbjct: 176 IKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQLISHYKNTR 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             +     +++ SP+L++G LSPR+ +  LK+   +         +  + EL+WR+++R 
Sbjct: 236 DGMIGSDYSTKFSPWLALGCLSPREIYTELKKY--ESRFSANESTYWLIFELLWRDYFRF 293

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +M  +         I  +      +D+ +L  W  G TG   IDA M +L   G+M NR 
Sbjct: 294 MMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTHTGFMSNRG 353

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   AS+L  DL +DWR G  YF  QL+D D+ SN G W + A  GND     R FN   
Sbjct: 354 RQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK-RNFNIEK 412

Query: 414 QGKRFDPQGTFIRHWL 429
           Q + +DP+  F   WL
Sbjct: 413 QAEEYDPKKLFRNLWL 428


>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
 gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
          Length = 1646

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/562 (16%), Positives = 163/562 (29%), Gaps = 87/562 (15%)

Query: 2    KATTAMSVH----------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
                AMSV           LVW R  LR+ DN AL     ++ A    VF+  P   +  
Sbjct: 1083 SRRGAMSVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPS 1141

Query: 52   GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
             + A +  F+  SL  +   L  +G            +    L   C + RV  + +   
Sbjct: 1142 RVGANRMRFLLQSLRDLDAQLRARGSSLLVLH----GEPRVVLPRACKKWRVDSVTWEHD 1197

Query: 112  YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
             E     RD  +   L +  V C +     L     +L                ++  + 
Sbjct: 1198 IEPYAKIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMG 1257

Query: 171  QADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQAIDPMFPIGEQNALH------ 217
              +     +  +  +   +              +  P        P+G+           
Sbjct: 1258 APNAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGET 1317

Query: 218  -----ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
                 +     +++     E+           LS        SP +      ++      
Sbjct: 1318 EGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTS 1377

Query: 273  KPKSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
              ++                 +    + H +        GK   P T  +          
Sbjct: 1378 GAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYY 1437

Query: 325  AWKQGYTGFPIIDAAMRQLNTIGWMHNR----LRMIT--------ASFLVKDLLVDWRIG 372
                G   F  ++        I W  +R                 A+             
Sbjct: 1438 LVAAGTKNFDKMEGNAIC-RQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHL 1496

Query: 373  EEYFMSQLL----------------DGD-----LASNNGGWQWAASTGNDSVPYFRIFNP 411
              + ++  L                D D      A NNG W W + +      YFR+++P
Sbjct: 1497 ARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQ-YFRVYSP 1555

Query: 412  TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465
                K++D  G ++RH+LP L N+P++Y++ P              + ++YP PIVDH  
Sbjct: 1556 IAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSA 1615

Query: 466  ACHHTLN----QYYAAKKQSLL 483
            A    ++     Y A K  + +
Sbjct: 1616 ASKRCVDDIATAYAAHKDANAV 1637


>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 441

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 175/429 (40%), Gaps = 23/429 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           L W   DLR+ DN AL AA  +    ++ V++  P  ++        +   +  F++ SL
Sbjct: 4   LYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++SL   G          + D    + +      ++++  +RQ    E  + + L+ 
Sbjct: 62  IGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQD 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +L      +     +     S+L   LQ         + LI+         L +P +++ 
Sbjct: 118 KLPKIAFTQYETLGLFTE--SLLPMPLQDLPTTFSQFRKLIEKKGDRGPSRLRIPTLKML 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH-----ILRKFCKEKVYYYVEQRDI-PAI 239
            P          + P                               +  Y E R+     
Sbjct: 176 PPAPGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNALDDW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +S+ SP+L+ G LS R+  + +     +         +    E++WRE++      + 
Sbjct: 236 NSSSKFSPWLAHGCLSAREVADSI--SLYEQQHTSNESTYWLWFEVLWREYFYWYALRHG 293

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S    +  +   ++       H  +AW +G T +P+++AAM QL   G++ NR R + AS
Sbjct: 294 SELFRRDGV-QGKRQSVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYISNRSRQLVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
             + +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q +++D
Sbjct: 353 CFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRG-LRRFNLDKQAQQYD 411

Query: 420 PQGTFIRHW 428
           P GTF+  W
Sbjct: 412 PNGTFVERW 420


>gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54]
          Length = 277

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 136/278 (48%), Positives = 177/278 (63%), Gaps = 3/278 (1%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            AI  ++P GE  A   L  F    +  Y ++RD P++  TS LSPYL+ GVLSP Q   
Sbjct: 2   DAIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQALR 61

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
                    L   K+GA +W+NEL+WREFY+HL+A  P++ M +P  P T  + W     
Sbjct: 62  AALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAPD 121

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+
Sbjct: 122 DLRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHLV 181

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q ++FDP+G F+R WLPEL ++    IH
Sbjct: 182 DGDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAIH 241

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            P            YP PIVD  ++    L  +    K
Sbjct: 242 DPSPMERAA---AGYPAPIVDLPQSRLRALEAFGNLPK 276


>gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 435

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 196/467 (41%), Gaps = 51/467 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +V    DLR+ D+ AL AA        + VF+  P                  S+  
Sbjct: 3   SATIVLFTQDLRVHDHPALAAAVER-PGPTLPVFVLDPAVAG-------------RSVRN 48

Query: 68  VQKSLS-----------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
               L+           ++G      +     D++  + +         +          
Sbjct: 49  RAALLADALADLRAALRERGADLVLLR----GDTVREVAALARASGADTVHVTDGVSSLA 104

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RR + L       +  ++F    ++PPG +       YKV+TP+ KA      +  +  
Sbjct: 105 ARRARRLRA---TGLTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAWEAAAWRDPVAP 161

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-D 235
                + L   V P  +P        A+    P G + A                  R D
Sbjct: 162 --PDRVVLPEGVRPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHD 219

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 TS LS  L +G LSP +           L   P +G  +++ +L WR+F+  + 
Sbjct: 220 DLPGAATSHLSADLRLGCLSPLEA---------ALAASPLAGGEAFVRQLAWRDFHHQVT 270

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A +P+V +        +  E         AWK+G TG P++DA MRQL   G++HNR RM
Sbjct: 271 AAFPAVNVRDYRPRDRKWREDPDALD---AWKRGRTGVPVVDAGMRQLLREGFVHNRARM 327

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITA+FL + L V WR G ++F + L+DGD+A+N G WQW A TGND+ P  R FNP  Q 
Sbjct: 328 ITAAFLTRTLRVHWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRP-NRAFNPLRQA 386

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +RFDP+G ++R +LPEL ++P    H P     +      YP PI D
Sbjct: 387 RRFDPEGVYVRRYLPELADLPGGRAHTPWR---EEHPPPGYPAPIAD 430


>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
          Length = 633

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 169/485 (34%), Gaps = 62/485 (12%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60
            L+W R  LRI DN AL  A   S+  V  VF+  P                    +  F
Sbjct: 154 SLMWFRKGLRIHDNPALQHAAMESN-CVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 212

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +  SL Q G      +    +  I+ L              N           
Sbjct: 213 LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKK------------NYASAAGIEVFS 260

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +         I +       L   S L  A Q     +P    L       D+ +  + 
Sbjct: 261 PVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWASSPLSTTLSWLPPVGDVGTCEIS 320

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +     +    I +    PF+  +      ++    I  K                   
Sbjct: 321 NVPTVKELGYEEIGQDELTPFKGGESE--ALKRLRESIRDKDWVANFEKPKGDPSAFLKP 378

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            T+ LSPYL  G LS R  +  L + + ++  +  S   S + +L+WR+F+  +    P+
Sbjct: 379 ATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPVSLVGQLLWRDFFYTVGFGTPN 437

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K      ++I WN D  LL AW++  TG+P IDA M QL   GWMH+  R   A F
Sbjct: 438 FDRMK-GNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 496

Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           L + DL V W  G + F   L+D D A NNG W W + +     P               
Sbjct: 497 LTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQP--------------- 541

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473
                         ++P +YI+ P +         K  +  +YP P+V H  A      +
Sbjct: 542 --------------DMPKEYIYEPWTAPPSIQXKAKCIIGKDYPKPVVCHDSAXKECKRK 587

Query: 474 YYAAK 478
              A 
Sbjct: 588 LAEAY 592


>gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
 gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
          Length = 433

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 201/467 (43%), Gaps = 40/467 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L     DLRI DN A   AC +S  +++ ++I     + ++        F+ ++L  V  
Sbjct: 6   LFLFYRDLRIKDNTAFIKACEDSK-EIVPLYILERHNFNKY-----SFEFVISALGYVNF 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G      +    +++ E+L            F       + +   +  EK L++ 
Sbjct: 60  ELNKLGSFLYLVERGFNEETFEFLREKI-------GFDAIYLSKDYLWSFEEKEKLLRNF 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              K  +         +  + +   KV+TPF K     L +   +      +        
Sbjct: 113 CREKGIELRFFEGNFLVSPNLISQTKVFTPFFKKWSAYLGEIRRKDFNFSKL-------- 164

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            N P      F+  +    +         ++        Y E+RD+    GTS+LS Y++
Sbjct: 165 -NTPILELSKFEDFEFSKKVRLDLIEWGFKRLESFDFDVYDEKRDLLYCDGTSKLSAYIN 223

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            GV+S    + ++K                +L EL +REF+ H+   +P       F   
Sbjct: 224 YGVISIYDVYEKVKNSKSS----------QFLRELAFREFWYHIRMHFPE-TRNLEFQEK 272

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T  IEW      ++ ++   TG+PI+DA +R L T GW+HNRLRMI ASF  K LL DWR
Sbjct: 273 TRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDWR 332

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           IGEE+F   L+D D   N   WQW+AS G D  P  RIFNP IQ  +FDP   FI+ +LP
Sbjct: 333 IGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYLP 391

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           EL +   + IH P  +  K      Y  P+VD        + +Y   
Sbjct: 392 ELKDEDCRKIHDPLKYKLK------YYTPMVDFYAQKELAIRKYKKI 432


>gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
 gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
          Length = 460

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 221/476 (46%), Gaps = 26/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LV L    R+  N       +++ A +   +   P +      +  +  F + ++ 
Sbjct: 1   MNIALV-LNRVFRLEQNPMFEY-LNHNQADIERCYCVIPLEL-FEDEAPLKRTFYHQAVT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q  + L + GI       + F    E       +        +     N       ++  
Sbjct: 58  QFIQQLIEIGIKPFVFPYTAFASFCEQ-----KEIDTVVFPSDIMSFHNCECDILHVKSE 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +Q + I   +   +    P   LN   Q YKV+T F KA    L Q       +  ++  
Sbjct: 113 IQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK-- 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  I    +   + +     IGE  +    + F    + +Y   R+      TSQL
Sbjct: 171 -----QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQL 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G L   +   +L E + D     +    +++ EL++REFY  LM +YP      
Sbjct: 226 SIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAH-T 280

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I W+++     AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K+L
Sbjct: 281 SFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKEL 340

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DW  GE YF + L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +G +I
Sbjct: 341 FIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGLYI 400

Query: 426 RHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + +LP+  NVP  Y+H P            DL  NYP PIVDH++A  H + Q+  
Sbjct: 401 KTYLPQWANVPASYVHEPWKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQFKK 456


>gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens]
          Length = 487

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/509 (28%), Positives = 207/509 (40%), Gaps = 65/509 (12%)

Query: 7   MSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQS 58
           MS       LVW R+DLR+ D++AL AA   +D +VIAV+I      E      +     
Sbjct: 1   MSTSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIRETRDEEGLGPRPLGGACR 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            + + SL  + + LS  GI   +        + + +        VT + + R+Y      
Sbjct: 59  WWAHESLTVLHEELSDLGIPLLF----AAGRAEKIIVQLASSLGVTAVRWTRRYASASRA 114

Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------- 166
            D  ++  L  +     S   ++L+ P +    +   YKV+TPF KA+            
Sbjct: 115 LDGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDVGDVLPKP 174

Query: 167 -------QNLVQADLRSLPVPAIRLTGPVTPSNIPRF-------FDYPFQAIDPMFPIGE 212
                  Q L+        V  +   G +  +              +    I   +  G 
Sbjct: 175 QAQSPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAGHWSPGL 234

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           + A   L         Y   +        TS+LSP L  G LSPRQ     +        
Sbjct: 235 RAAEDQLDDLSAIIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAAR----TTSS 290

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
             +    +W+ +L WREF  HL   YP      P  P      +  D   L  W+ G TG
Sbjct: 291 LTQDDRAAWIRQLYWREFSWHLTYHYPH-IDSAPIRPEFHNFPYEDDDDALTHWRAGTTG 349

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D A+N   W
Sbjct: 350 YPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADEANNPVSW 409

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QW A +G D+ PYFR+FNP  Q +RFDP   +I  WL                      L
Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWL------------PYTPATAPPPL 457

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
                   VD +++    L+ Y   K +S
Sbjct: 458 --------VDLRQSRQAALSAYDHMKNRS 478


>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 628

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 111/554 (20%), Positives = 179/554 (32%), Gaps = 86/554 (15%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+     + W R DLR+ D+ AL AA     A +  +F   P    +      +  F+  
Sbjct: 1   MATGPRVIYWFRTDLRLHDSPALAAALALDPAVLWPIFTWDPHYVYRARGGLNRWQFLLD 60

Query: 64  SLLQVQKSLSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
               + +S+++          +                  +VT L + +  +     RD+
Sbjct: 61  CQNDLSESITKLNSRSKLFVLREG----PQTLFPKLFKAWKVTHLVFEKDTDAYARERDE 116

Query: 122 LLEKR---------------LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166
           ++ +                L       +          S L  A            A  
Sbjct: 117 VVMRAASEAGVEVIVKSGRTLWDSDAVVAKHGGKPTMSISQLQTAGAKVGPIAKPIPAPQ 176

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                 ++          T P   +      D  +  I           +  L       
Sbjct: 177 SLPNPGEMPVDFGQTPPETEPDFNAEQRTEGDAAYAKIAGPEGDFAIETMEELGFPPAST 236

Query: 227 VYYYVEQRDIPA-------------------------IQGTSQLSPYLSIGVLSPRQCWN 261
            +   E R +                            Q T+ +SP+L  G LS R+ + 
Sbjct: 237 PHRGGETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYW 296

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN---- 317
           R++               S L +L++R+ Y    A            P+   I W+    
Sbjct: 297 RVRAVVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSK 356

Query: 318 -----------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                            +     + WK G TGFP IDA MRQL   GW+H+  R   A F
Sbjct: 357 VDAKTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACF 416

Query: 361 LVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           L +    +DW  G E F   LLD + A N G WQW + T   S  YFR ++P   G+++D
Sbjct: 417 LTRGGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWD 475

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--------------YPLPIVDHKK 465
            QG ++R W+PEL ++  +YI+ P      +                   YP P+ D  +
Sbjct: 476 KQGAYVRRWVPELKDLDAKYIYEPWKAPLPDQKKAGVRVTGRGETQERGVYPKPMFDFNE 535

Query: 466 ACHHTLNQYYAAKK 479
                L     A +
Sbjct: 536 RRTACLAAMKKAYE 549


>gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299]
 gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299]
          Length = 450

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 186/459 (40%), Gaps = 17/459 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A F+  P++     +     ++++ +L  +Q 
Sbjct: 1   VVWFRQDLRVRDNPALHAAARTG-RPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59

Query: 71  SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL  +  G        S+   S + L +   +     ++ NR YE  ++ RD+  E++  
Sbjct: 60  SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +          G +                      V+  LR             
Sbjct: 120 A----ELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCARLGEPPPPLP 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P  +        +A       G Q+     +   +        +R    ++ T+++SPY
Sbjct: 176 PPPTMRVRLPADKRARSYTEHGGVQSNPGNGQSNGQSNAPKASTERFRADVRTTARISPY 235

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +  G LS R+ ++  K   V         A  +L  L WR+     +  +P +C     +
Sbjct: 236 VRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPRLCDEP--L 293

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +W        AW+ G TG+P++DA MR+L   G++ N +R + A FL++ L VD
Sbjct: 294 RPQYATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGFLIEYLNVD 353

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G+ +F   L+D D+A     WQ    +G D   +  + +P    K  DP G ++R W
Sbjct: 354 WRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRW 411

Query: 429 LPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
            PEL+ +P +Y+H P              L  +YP  IV
Sbjct: 412 CPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450


>gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
 gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
          Length = 457

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 211/469 (44%), Gaps = 25/469 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    R   N         + +K+ A +   P      G S R+  F + ++ Q    
Sbjct: 5   VLLNRVFRTKHNPLFSY-VEQNRSKIDACYFIIP-LEDLKGASERKKAFYFGTVNQFLTE 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L++        +   F  + E L  +C +Q++  +               +  +R +   
Sbjct: 63  LAKY-------EIRPFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRHQREKLTA 115

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                    +                       +     +A+   + +           S
Sbjct: 116 AGLEIKTIRVQHYFHPRATFKN-----GDEPYKVFTPFYKANRPHVTIQKPAAYSLKQLS 170

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
            I            P   + E+ A+   + F  E +  Y   R++ A   TS LS YL+ 
Sbjct: 171 EITVTGTGHLDHSYPDDGLSEEQAVANWQTFLNESIEAYETNREVLAEIKTSWLSVYLAY 230

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G++  +Q +N+L ++        +    +++ EL++REFY  LM  YP +   + F P  
Sbjct: 231 GLIDIQQIFNQLLDQ----REANEKNYEAFIRELLFREFYYVLMVTYPEMAT-QSFKPNY 285

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            +IEW+ +    + WK G TG+PI+DAAM++LN  G+MHNR+RM+ + FL KDL +DWR 
Sbjct: 286 RQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRMVVSQFLTKDLFIDWRW 345

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE+YF SQL+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD  G +I+ +LP 
Sbjct: 346 GEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQSERFDQDGAYIKQYLPI 405

Query: 432 LNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474
              VP  Y+H       K       +L   YP PIVDHK++    + + 
Sbjct: 406 FKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQSRQAIMEKL 454


>gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis]
          Length = 595

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 217/535 (40%), Gaps = 81/535 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ DN  L  A + S    V A+++     W  H  S  +  F   +L  + 
Sbjct: 73  IHWFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLS 132

Query: 70  KSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR---- 118
           + L++ G+              SN  +  +W      +   +K +     +  +      
Sbjct: 133 RELAKLGVRLHVKYFIPESPCLSNSREYAQWFSHIIEEIAASKNYDGNSKDDTKDDTDAD 192

Query: 119 -----------------------------------------RDKLLEKRLQHRVICKSFD 137
                                                         +         K F 
Sbjct: 193 EPALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRDLKICRLQTQSSNSANFTLKLFH 252

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLPVPAIRLTGPVTPSNIP 194
           D  ++ PG +       Y ++TP+ K  +  L    +         +I  +      N  
Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWVSFLEANQKDKHTICIEASIPQSSNREKVNPE 312

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--------DIPAIQGTSQLS 246
                         P    N      +   +K+  ++ +R        D+  + GTS LS
Sbjct: 313 EIKYQLPDKFMSEMPEQTLNIPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSLLS 372

Query: 247 PYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            Y++ GV+S R      +       ++  IK  +   +++ E+ WR+FY+H ++++P + 
Sbjct: 373 CYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLS 432

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           M  PF   T  I+W  D  L + W  G TG PI+DA M ++   G+++NR RMITASFL 
Sbjct: 433 MDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLA 492

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR GE +F   L+D D ASN GGW + ASTG D  PYFR+FN  +Q +++DP+G
Sbjct: 493 KNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEG 552

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            FIRHWL E +   +  +H P             P  IVD + +    L ++   
Sbjct: 553 KFIRHWL-ENDENDSDNVHEPK------------PNAIVDLRDSRERVLERFREV 594


>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
 gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
          Length = 539

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 189/443 (42%), Gaps = 24/443 (5%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
              ++  SL+Q+  SL + G      + +    +++ L         +++FYN  Y+   
Sbjct: 2   SRWWLKQSLIQLSSSLERLGAPLLVKRVAG---TLDALLQIAHDTGASQVFYNHLYDPVS 58

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + RD  +++ L    I  +     L   P  I +   Q +  +  F    +         
Sbjct: 59  LIRDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPL 118

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY 228
             P   + L G +  S          +A       +   +  G          F    + 
Sbjct: 119 LPPRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPIL 178

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIW 287
            Y  +R       TSQLSP+L  G +S R+ +  ++ ++F             +L  L  
Sbjct: 179 QYSIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGL 238

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +P     +  +   +   W  D    ++W+QG TG+P++DA MRQL   G
Sbjct: 239 REYSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATG 297

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+H ++R++ +SFLVK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R
Sbjct: 298 WLHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDR 357

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461
             NP  +G + DP+G ++R WLPEL+ VP  +IH P             +L  NYP PIV
Sbjct: 358 WENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIV 417

Query: 462 DHKKAC---HHTLNQYYAAKKQS 481
           +   A       L++ +  KK +
Sbjct: 418 EVAAAYYRQQQALDEMW--KKSA 438


>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
 gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
          Length = 441

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 169/426 (39%), Gaps = 17/426 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62
              L W  NDLR+ DN AL  A  N D ++I +F        P  +    +  ++  F+ 
Sbjct: 3   KTGLFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLL 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +Q +L  +G      +     D +  +     +  V  ++ +    + E R+ + 
Sbjct: 62  ESLNDLQHTLEARGQQLIVMK----GDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L            +  S+      +      +   ++ FRK +    +   ++     A+
Sbjct: 118 LRADFPRVQFDSYWTHSLFQ-QRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAV 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++     +     +               ++           +        D+     +
Sbjct: 177 PVSELHEDTLPLPTYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRN--DLDHWSHS 234

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ S +L+ G LS ++   +L++   +         +    EL+WRE+++     Y    
Sbjct: 235 TKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYFQWYAFRYRHKL 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +   +           Q W  G T +P+++A M+QLN  G+M NR R I AS  +
Sbjct: 293 FRPQGLGKKKIT-CCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQIVASCFI 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q +++DPQ 
Sbjct: 352 NELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQRQYDPQQ 410

Query: 423 TFIRHW 428
           TFI+ W
Sbjct: 411 TFIQKW 416


>gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
          Length = 172

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 117/171 (68%), Positives = 137/171 (80%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            WTE+++W  +  LL+AW+ G TGFPI+DAAMRQLN  GWMHNRLRMITASFLVKDLL+D
Sbjct: 1   RWTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLID 60

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR W
Sbjct: 61  WRTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRW 120

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL +VP + IH P  W DK  ++LNYP PIVDHK+A   TL  Y AA+K
Sbjct: 121 VPELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171


>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
 gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
          Length = 655

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 175/549 (31%), Gaps = 86/549 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA   +   +  ++   P    +  +   +  ++      + K
Sbjct: 7   IYWFRTDLRLHDSPALKAALDLNPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLSK 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             ++T L + +  +     RD  + +  +
Sbjct: 67  SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIAK 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +         L     L          +  +       +    R +P P        
Sbjct: 123 KAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSIPNPGD 182

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
           T     +        ++ +   G + +   L     +     +E+               
Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTMEELGLKPATTAHRGGET 242

Query: 235 --------------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                                          Q T+ LSP++  G LS R  + R ++   
Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
               K      S   +L++R+ Y    A            P    I W+  S        
Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
                           Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 363 ITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW + T   +  ++R ++P    +++D +G F+R
Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FYRCYSPIAFPQKWDKEGEFVR 481

Query: 427 HWLPELNNVPTQYIHAPHSWL-----------------DKNDLSLNYPLPIVDHKKACHH 469
            ++PEL     +YI+ PH                            YP P+ D  +    
Sbjct: 482 KYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGDGLAAAEGSMKTYPKPMFDFAQRRDI 541

Query: 470 TLNQYYAAK 478
            L     A 
Sbjct: 542 CLAGMKNAY 550


>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
 gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
          Length = 1025

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 108/528 (20%), Positives = 185/528 (35%), Gaps = 84/528 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSHFI 61
           ++W RNDLR+ DN  ++ A          +V+ V+   P       W      A ++ F+
Sbjct: 11  VLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTGAHRAAFL 70

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-----------------------SYC 98
              +  ++  L   G           +     L+                       +  
Sbjct: 71  LECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEVTSEETRTDVAVA 130

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
              +  +                    R     +    D +     G     A  M  + 
Sbjct: 131 RALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKDMP 190

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD-------------------- 198
             F     +   +  +R       +   P+ P+                           
Sbjct: 191 DVFTPFREKVEKRCPVRKDLPLPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPPAA 250

Query: 199 -------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250
                  +P   +D         A      +  + +  Y + R+ +     +++ +P+L+
Sbjct: 251 RPPPPTKHPKAVLDFKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLA 310

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR+ ++ +++             +  + ELIWR+++R     + +    +     
Sbjct: 311 AGCISPRKIYHEIRKYEAQRQSNK--STYWVIFELIWRDYFRFFALKHGNRIFFETGTSG 368

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
              + WN D+ L   W+ G TG P++DA MR+L   G+M NR R   AS+LV DL +DWR
Sbjct: 369 LPLV-WNPDADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNLASYLVLDLGIDWR 427

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ------------GKRF 418
            G +YF SQLLD D+ SN G W  AA      +     FN   Q             K +
Sbjct: 428 RGADYFESQLLDYDVTSNWGNWVAAAGLAGGRIN---HFNIAKQASDVGAFRIGGGSKDY 484

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460
           DPQG ++R W PEL +VP   +H P              + ++YP PI
Sbjct: 485 DPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGVDYPNPI 532



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 25/250 (10%)

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+ +     +++ +P+L+ G +SPR+ ++ +++             +  + ELIWR
Sbjct: 733 YFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKYEAQRQSNK--STYWVIFELIWR 790

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R     + +    +        + WN D  L   W+ G TG P++DA MR+L   G+
Sbjct: 791 DYFRFFALKHGNRIFFETGTSGLPLV-WNPDPDLWHRWRDGRTGLPLVDANMRELAATGF 849

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   AS+LV DL +DWR G +YF SQLLD D+ SN G W  AA      +     
Sbjct: 850 MSNRGRQNVASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRIN---H 906

Query: 409 FNPTIQ------------GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKN 450
           FN   Q             K +DPQG ++R W PEL +VP   +H P             
Sbjct: 907 FNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGC 966

Query: 451 DLSLNYPLPI 460
            + ++YP PI
Sbjct: 967 RIGVDYPNPI 976


>gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 453

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 176/485 (36%), Gaps = 42/485 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + ++W + DLR++D+  L+ A  N+     V+ ++I  P Q      + +   F++  L 
Sbjct: 1   MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+  ++ G            ++++ L +   Q + T L+ +++       +       
Sbjct: 61  DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDR---A 113

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +      +      L           +        R A  +    A        A R   
Sbjct: 114 VAAWCKSEGVVFHELPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFAPRPPP 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   N+P                  +          K K Y +     + A  G S+LS
Sbjct: 174 VLKRCNVPNAAGEDKPLRMKGGRTQARAVAAKFFTPAKLKSYPFSISSPLKAWNGCSRLS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------SGAFSWLNELIWREFYRHLMAFY 298
           PYL+ GV+S R+   +L      +  +            A  +++ LIWR+ Y   +  +
Sbjct: 234 PYLAYGVVSDREVLQKLNALVNTVHGQGDSVLISKVEDAARFYVDRLIWRQGYLQQLENH 293

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +     +           +   L AW+ G TGF  IDA    L   GW++ R R    
Sbjct: 294 TGLETDAFYGDE----PAEVNQEFLNAWQHGRTGFAYIDACQHFLQQTGWLNMRARATLV 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L + W+    Y   Q LD + A + G  + A+ T + S     +++P  Q    
Sbjct: 350 SFACVQLGLPWQPVALYLAQQFLDFEPAIHYGQVRIASGTSHFSQML--VYDPLKQQAEQ 407

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP+G F++ WLP                      +  YP PI+D+ ++      + +A +
Sbjct: 408 DPKGEFVKRWLP-------------------GYGTAGYPAPIIDNAESLKQGKARLHAMR 448

Query: 479 KQSLL 483
           +  LL
Sbjct: 449 QNRLL 453


>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH
 gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 181/433 (41%), Gaps = 18/433 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64
            L   RNDLR+ DN ALY A   S+  +I  F   P Q     +    +   +  F+  S
Sbjct: 17  GLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQS 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L Q++  L  +G        +        L     +++V  +F ++     E  +  LL+
Sbjct: 76  LKQLRTELEMRGQKLIVLTGTFD----RILTELISERQVDAIFLSQHQGYYERLQLGLLQ 131

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +R       ++ ++++      +      + + ++ FRK +    +  +    PV A+  
Sbjct: 132 QRFPFLPFHETPNNTLFSE-QELPFELADLPETFSQFRKKVE--PLSRNFSVQPVNALPS 188

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQGTS 243
                     +       A D           H+   F  E    Y + R+       ++
Sbjct: 189 LPKNISYPGFKAETLNELASDDFEGGERAALTHLTSYFSGESAGTYKQTRNALDDFSSST 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + SP+L+ G LS RQ    L+    +        ++    EL+WRE++      +     
Sbjct: 249 KFSPWLAQGCLSVRQIMAALRAYETEFGENE--SSYWISFELLWREYFFWYALKHGKRLF 306

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +   +  + +  S   Q W  G T +PI++A M+QLN  G+M NR R + AS  V 
Sbjct: 307 AFSGLSG-KSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVH 365

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR G  YF  QL+D D++SN G WQ+ A  G D   + R FN   Q +R+DP   
Sbjct: 366 ELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-RQFNLEKQTERYDPDNE 424

Query: 424 FIRHWLPELNNVP 436
           FI  W  +L+  P
Sbjct: 425 FIERWAGDLSGQP 437


>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 430

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 179/435 (41%), Gaps = 21/435 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
              +VW + DLR+ DN+ +  A   S+ ++I V+      +           + ++ F+ 
Sbjct: 3   KTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTGSFRAQFLL 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + K+L   G                 +     + +  K+F  R+    E + +K+
Sbjct: 62  ESLQDLDKNLRAIGSGLVI----TKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKM 117

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSL 177
           ++  L   R   ++F  S L     +      +  V+T FRK   Q      V      +
Sbjct: 118 VQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEKI 177

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
             P I      T  ++              F  GE  A++ L  +  +      Y + R+
Sbjct: 178 NSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSISNYKKTRN 237

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +S+ SP+L++G +SPR  +N +K+   +L       ++  + EL+WR+F+R +
Sbjct: 238 GMVGENYSSKFSPWLALGCISPRFIYNEIKKY--ELQFGANDSSYWLIFELLWRDFFRFM 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              Y +       I   +    + +  L   W  G T    I+A M +L   G+M NR R
Sbjct: 296 FKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTGFMSNRGR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              AS+   +L +DWR+G  YF  QL+D D+ SN G W + A  GND   + R FN   Q
Sbjct: 356 QNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGH-RYFNIEKQ 414

Query: 415 GKRFDPQGTFIRHWL 429
              +D    F   WL
Sbjct: 415 ASDYDKNKEFRELWL 429


>gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
 gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
          Length = 478

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 130/476 (27%), Positives = 207/476 (43%), Gaps = 25/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW+R +LR+ D+ AL  A       V+ VF+       +    A     +   +    +
Sbjct: 7   LVWVRRELRLGDHPALAEAAATG-RPVVPVFLCDETVEAR---GAAAQWRLGLGVAAFAE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      +       +        +    +++++R +E      ++ +   L   
Sbjct: 63  ALAGAGSRLVLRRGGAAAALVAL----AREAEAGEVWWSRAHEPVAAALERDVAGALAAE 118

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  ++F+  VL PP S+       YKVYTPF K++        +    R         +
Sbjct: 119 GIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPLPPPKRLTAPGRWPES 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  A   L +F +E++  Y + R+   ++GTS L
Sbjct: 179 ERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNRFDVEGTSGL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++G +S R CW       +        GA ++L E+ WR+F  HL+   P +    
Sbjct: 239 SENLAVGEISARSCWQ----AGLMARDAGNPGAETFLKEVAWRDFAYHLLHHTPRLATDN 294

Query: 306 PFIPWTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               W        +      AW++G TG  ++DAAMR++   G MHNR RMI  S+L K 
Sbjct: 295 WRPEWAAFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNRGRMIVGSYLTKH 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL  WRIG+ +F + L D D A+N  GWQW A +G D+ P+FR+FNP  Q ++FDP G +
Sbjct: 355 LLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPDGQAEKFDPDGAY 414

Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            R W+ E  + P     A     P  W    D    YP P+V   +     L  Y 
Sbjct: 415 RRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGRARALAAYK 468


>gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 559

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 185/485 (38%), Gaps = 34/485 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W++ D+R+ DN+AL  A     + V+ VF+  P    Q   SA        +L +++
Sbjct: 20  AVWWIKRDMRLADNEALTRAVAEH-SLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELR 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + + + G          + +++E  ++       T ++ + +       +     +    
Sbjct: 79  RRVRRAGAEILV----GWGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRA--- 131

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 +     +        ++Q   V       L ++ + A      V AI LT  + 
Sbjct: 132 ------WCRRRGVTVIERPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELR 185

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--------DIPAIQG 241
                     P   +       E   ++    +     +     R           A + 
Sbjct: 186 TWAATTPTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFES 245

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDL--------LIKPKSGAFSWLNELIWREFYRH 293
            S+LS +L+ G LS RQ +   +    +L          + +    S+L  L WR+ +  
Sbjct: 246 GSRLSVHLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQ 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +   P +   +P  P  + +E   D  LL+ W++G TGFP++DA MR L T G+ + R+
Sbjct: 306 RLETEPEMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRM 364

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  S     L +DWR    +      D +   +    Q  A  G   +   R +NP  
Sbjct: 365 RAMAVSVACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQA--GVVGINTIRSYNPFK 422

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q    DP   FI  W+PEL ++P + IH+      ++     YP P+VDH+      + +
Sbjct: 423 QALDHDPDARFITRWIPELRDLPAERIHSFDQDPPRSS-ETTYPPPVVDHRTRTRAWVER 481

Query: 474 YYAAK 478
            Y  +
Sbjct: 482 LYQLR 486


>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 559

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 125/247 (50%), Gaps = 9/247 (3%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T+ LSPYL  G +SPR  ++ LK+   D   K  +   S   +L+WRE + +L AF  
Sbjct: 297 PSTTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWRE-FYYLAAFGT 355

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                    P   +I W  D   L AW++G TGFP IDA M QL   GW+H+  R   A 
Sbjct: 356 PNYHKMEGNPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVAC 415

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL V W  G + F   L+D D A N G W W + +      YFR++ P   GK++
Sbjct: 416 FLTRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMWLSCS-CFFYQYFRVYGPVSFGKKY 474

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472
           D  GTFIR +LP L ++P +YI+ P +            + ++YP PIVDH  A    + 
Sbjct: 475 DKDGTFIRKYLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVDYPPPIVDHAVASKECIE 534

Query: 473 QYYAAKK 479
           +   A K
Sbjct: 535 KLAVAYK 541



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  + W R  LR+ DN AL  AC ++ A V  +F+  P       + A +  F+  SL  
Sbjct: 8   TRSIHWFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRFLLQSLTD 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           +  SL  +G      +     D    + +        +L + 
Sbjct: 67  LDASLRARGSSLLVLR----GDPKAVVPAALRAWGCDRLTHE 104


>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
          Length = 604

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 174/545 (31%), Gaps = 89/545 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA       +  +F   P    +      +  F+  S+ ++  
Sbjct: 7   VYWFRTDLRLHDSPALKAALDLEPDVLWPIFTWDPYYVYRARGGTNRWQFL--SITKLNP 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
                       +    +             +VT L + +  +    +RD ++ K  +  
Sbjct: 65  K-----SKLFVLR----EAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKEA 115

Query: 130 ------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
                           +        P  S+        KV    R       +       
Sbjct: 116 GVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPIAAPKGLPDPGDMP 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 +       N                P G+     +           Y     I 
Sbjct: 176 LDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIA 235

Query: 238 AIQ---------------------------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
                                          T+ LSP+L  G LS R+ + R+++     
Sbjct: 236 LKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAY 295

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--------- 321
                +   S   +LI+R+ Y    A   +        P+   I W+  S          
Sbjct: 296 GKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVT 355

Query: 322 ------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVD 368
                         Q WK+G TGFP IDA MRQL   GWMH+  R   A FL +    VD
Sbjct: 356 DKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLGRHSVACFLTRGGCYVD 415

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G E F   LLD + A N G WQW + T   S  YFR ++P   G+++D  G  IR W
Sbjct: 416 WERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKW 474

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQ 473
           +PEL N+ ++YI+ P     ++                    YP P+ D  K     +N 
Sbjct: 475 VPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGDGLDDQEQGTYPKPMFDFGKRRETCINA 534

Query: 474 YYAAK 478
              A 
Sbjct: 535 MKIAY 539


>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
 gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
          Length = 1229

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/542 (18%), Positives = 180/542 (33%), Gaps = 84/542 (15%)

Query: 17   DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
            DLR+ D+ AL AA       +  ++   P    +  + + +  ++      + +S+++  
Sbjct: 580  DLRLHDSPALKAALDLKPECLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSITKLN 639

Query: 77   --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
                    +    +             ++T L + +  +     RD+ + +  +   +  
Sbjct: 640  PKSKLFLIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEV 695

Query: 135  SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                   L     L          +  +       + A  R +P P        T  N  
Sbjct: 696  VIKVGRTLYDPDELVKENNGKPTMSITQVQNAGKKIGAIPRPIPAPKTLPDPGKTDFNFD 755

Query: 195  RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE----------QR---------- 234
            +        I+ +   G++ +   L     +     ++           R          
Sbjct: 756  QEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQELGLKEATTQHRGGETLALKTL 815

Query: 235  --------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
                                   + Q T+ LSP+L  G LS R+ + R+++       K 
Sbjct: 816  DETIANSEYTATFEKPKTAPTAFSPQSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKA 875

Query: 275  KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------------- 321
                 S   +L++R+ Y    A            P    I W+  S              
Sbjct: 876  SQPPASLTGQLLFRDMYFGAQAALGYSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYL 935

Query: 322  --------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIG 372
                      Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    +DW  G
Sbjct: 936  VDSALAESHFQRWKHGRTGFPWIDALMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERG 995

Query: 373  EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
             E F   L+D + A N G WQW + T   +  +FR ++P     ++D  G F+R ++PEL
Sbjct: 996  AEVFEEFLIDHESACNIGNWQWLSCTAFFAQ-FFRCYSPVAFPAKWDKNGDFVRRYVPEL 1054

Query: 433  NNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQYYAA 477
             +   ++I+ P      +                    YP P++D  +     +     A
Sbjct: 1055 AHFDKKFIYEPWKAPIADQKKWGCRIVESVDGYVQEGEYPKPMLDFNERRDTCIQAMKNA 1114

Query: 478  KK 479
             +
Sbjct: 1115 YR 1116


>gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
 gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 125/485 (25%), Positives = 189/485 (38%), Gaps = 40/485 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L WL  D R  DN AL AAC  +D  ++AVF        Q    A     +  +L    
Sbjct: 5   GLFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQ---GAASRWRLEQALRAFD 59

Query: 70  KSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +L ++  G      +     +    L +        ++  +             L   L
Sbjct: 60  AALRKRTGGRGVLVLR----GEPDRILPALVQNTGAQRIHQSDWPTAGMRAVQDRLRAAL 115

Query: 128 QHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                        LL   ++L   A   Y+VYTPF +AL Q+      R  P        
Sbjct: 116 APLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPARITPCAD 175

Query: 187 P-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   ++          +                    ++   Y   RD P    
Sbjct: 176 DHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFLDQAAVYPAGRDHPDQPA 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS +L++G +SPR+ W                G   +L+E+IWREF  HL+   P +
Sbjct: 236 TSNLSEHLALGEISPRRIWAIAS-LRAAAEPALAPGITKFLSEVIWREFSWHLLIANPDL 294

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   W+E   W + +  L  W+Q  TG  ++DA +R++   G MHNR+RM+ AS+L
Sbjct: 295 PTQPWRQEWSEF-PWQQRTSALSRWEQAATGISLVDAGLREMRVTGRMHNRVRMVVASWL 353

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K ++ DWR+G ++F   L D D A+N   WQW A  G D+ PYFRIFNP  Q + FD +
Sbjct: 354 TKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYFRIFNPVKQAEEFDKK 413

Query: 422 GTFIRHWL--------PEL----NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           G + R WL        PE     +++PT + H    W +               +     
Sbjct: 414 GIYRRKWLAGFDGSAAPEAIAYHDSLPTDW-HVARHWREDASDER--------LRGGREA 464

Query: 470 TLNQY 474
            L+ Y
Sbjct: 465 ALDAY 469


>gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
 gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
          Length = 417

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 194/469 (41%), Gaps = 54/469 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ D+ AL  A   S   ++ + +  P   R    S R+  +   ++  +
Sbjct: 1   MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLR---TSPRRRAWFLENVRAL 55

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +   +    E +     + +   ++  + Y      RD   E  L 
Sbjct: 56  RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAAL- 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                             +  H L    +  P      +           +         
Sbjct: 111 -----------------GVPLHLLPAPHLIPPDLPRAHRVYTPFSRNFQGLDPPLPAPEA 153

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P               P+   GE+ A   L  F + K+  Y  +RD    +G S+LSPY
Sbjct: 154 LPQAPEEGEIPQEDPGLPLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRLSPY 213

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            ++GVLSPR+          +       GA  W+ EL+WR+F  HL+  +P +   +   
Sbjct: 214 FALGVLSPREAAWEALRRGGE-------GARKWVAELLWRDFSYHLLYHFPEMAQ-RALD 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E + W +D  L QAW  G TG P++DAAMR+L   G++ NR RM  A F VK LL+ 
Sbjct: 266 ARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKYLLLP 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FN   QG+R DP G ++R +
Sbjct: 326 WQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAWLRRF 385

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            PE    P+   + P               P+VD  +A    L      
Sbjct: 386 APE---YPS---YEPK-------------DPVVDLAEARRRYLALAKGL 415


>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 442

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 192/447 (42%), Gaps = 35/447 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------------ISAR 56
           +LVW RNDLR+TDN +L  AC N D KVI ++   P  ++                    
Sbjct: 3   NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ FI  ++  ++K L + GI    +     D  +        +  +T ++  +++  +E
Sbjct: 62  RAQFIIEAIEDLRKQLDKHGIPLLVYH----DSPVNVFPDIIKEYDITNIYLQKEWTRDE 117

Query: 117 VRRDKLLEKRLQ----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----- 167
           V ++ LL   L+         +++D  +  P     ++  ++  V+T FRK   +     
Sbjct: 118 VEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIR 177

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
            LV        +P++  T      ++              +  G   A   L  +  +  
Sbjct: 178 TLVDIKDYQQELPSVVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWERLNHYFWDTG 237

Query: 228 --YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              YY + R+    I  +S+LS +L+IG +S R+ +  ++    ++        +  + E
Sbjct: 238 KLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEVKKNQ--DTYWLIFE 295

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWR+F++++     +       I   ++ EW      L  W  G T    ++A M++L 
Sbjct: 296 LIWRDFFKYVSLKNGNDIFKLGGI-LHKEYEWKSSERELSKWINGETHERFVNANMKELA 354

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWM NR R   AS+       DWRIG  YF   L+D D+ SN G W + +  GND   
Sbjct: 355 ATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGNDPRN 414

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPE 431
             R FN  +Q  R+D  GT+ R WL E
Sbjct: 415 --RTFNIELQASRYDSDGTYQRMWLQE 439


>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 355

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/345 (34%), Positives = 169/345 (48%), Gaps = 16/345 (4%)

Query: 143 PPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
            P          YKVYTPF      + +        +              S       +
Sbjct: 18  EPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLNNSENLDSLKLIEPKH 77

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
            +Q I   + IGE  +  IL +F   KV  Y   RD  +   TS+LSPYL  G +SP Q 
Sbjct: 78  SWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDSTSKLSPYLHFGEISPNQI 137

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           +N +       L    +    ++ EL+WR+F  + + +YP     K      +  +W+ D
Sbjct: 138 FNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LHNKNINQKFDSFKWDND 191

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL+K+ L+ W+ GE++F   
Sbjct: 192 PTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDT 251

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+    +IR ++PEL  +P + 
Sbjct: 252 LFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKL 310

Query: 440 IHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I  P    +         L  NYP PIVD KK+    L  +   K
Sbjct: 311 IAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHNQIK 355


>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 694

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/550 (21%), Positives = 186/550 (33%), Gaps = 92/550 (16%)

Query: 10  HLVWLRNDLRITDNKALYAACHNS---------DAKVIAVFIATPEQWRQHGISARQSHF 60
            +VW R DLRI DN AL AA             +  ++ ++I    + ++      +  F
Sbjct: 99  AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL--HRPKRQRCGPVRFQF 156

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  + +S+++              D+ E L +      VT LF+        V RD
Sbjct: 157 LLEAIEDLARSIAKLDGRLLVLS----GDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRD 212

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +    +   +  +    V L     +             R   I   +    + +P P
Sbjct: 213 NRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQPIPAP 272

Query: 181 AIRLT-------------------------------GPVTPSNIPRFFDYPFQAIDPMFP 209
              L                                G V  +    F   P  A     P
Sbjct: 273 VKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFGLTPP 332

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ------------LSPYLSIGVLSPR 257
                 +       K    +  ++R +   +                LS YLS G LS R
Sbjct: 333 TPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAR 392

Query: 258 QCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFY-----------PSVCMGK 305
           + + R+    +    +P      +   +L+WREF+   M                    +
Sbjct: 393 EFFYRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNFDSQELNPSCKQIDWR 452

Query: 306 PFIPWTEKIEWNKDSHLL--------------QAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
               +        +                  Q WK G TGFP IDA MRQ+N  GW H+
Sbjct: 453 LLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTHH 512

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL +  L + W  G  YF  +++D D   N G W W +++      Y R+ +
Sbjct: 513 AGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSAS-CFFTNYRRMAS 571

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464
           P+   +R+D QG FIR ++P L N+P +Y+  P              +  NYP PIVD K
Sbjct: 572 PSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVDSK 631

Query: 465 KACHHTLNQY 474
            A    +   
Sbjct: 632 LAMSRCIAGM 641


>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
 gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
          Length = 427

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 22/432 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSHFIYASLLQ 67
            +VW  N+LR+ DN  L AAC N+  +V+ V+   PE+       I   ++ F   SLL 
Sbjct: 3   SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL +  I F         D  + L  Y  +  +  L++ + +   EV  +K +E ++
Sbjct: 63  LKRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D  LL P  I     ++ KV+TPFRK +   L       +P      +  
Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAPLEVPAKQTNTSNT 178

Query: 188 VTPSNIPRFFDYPFQ--------AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIP 237
               +   +     +             F  GE+ A   +  +     +   Y E R+  
Sbjct: 179 PLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKETRNGL 238

Query: 238 AI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +++LS +L+ G +S R  + +LK    +  +K     +  L EL+WREF++++  
Sbjct: 239 IGLDYSTKLSAWLANGCISARTIYYQLKAY--EKTVKANESTYWVLFELLWREFFKYVGL 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       I   +      D  +   W  G T  P I+A M++L+  GWM NR R  
Sbjct: 297 KHKNDLFKSGGI-NHKSFAQGNDPKVYNDWISGTTHSPFINANMKELSQTGWMSNRGRQN 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+  K L  DWRIG  YF SQL+D D+ SN   W + +  GND  P  RIFNP  Q  
Sbjct: 356 VASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNPERQAD 413

Query: 417 RFDPQGTFIRHW 428
            +DPQ  F + W
Sbjct: 414 MYDPQKAFQKLW 425


>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 551

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 114/502 (22%), Positives = 194/502 (38%), Gaps = 50/502 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISAR 56
           M  ++  +  +VW RNDLR+ DN  +  A      +  A+V+ V++     ++       
Sbjct: 1   MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60

Query: 57  QS-----HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-----------WLDSY--- 97
           +       F    +  ++++L   G           D   E            L      
Sbjct: 61  RFGAGRGKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLTGANDKTIVLTQTEVT 120

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
             +  + +       E           +RL    +  + D       G      +     
Sbjct: 121 SEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFR 180

Query: 158 YTPFRKALIQNLVQADLRS------------LPVPAIRLTGPVTPSNIPRFFDYPFQAID 205
                K  ++ +V A   +              +P  +     +    P    +     D
Sbjct: 181 NKVESKCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWLKDGAD 240

Query: 206 PM----FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258
                 F  GE  AL  ++ +  +      Y E R+ +     +++L+P+L++G +SPR 
Sbjct: 241 ERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGCVSPRY 300

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
             + ++    +         +  + ELIWR+F++     + +               W  
Sbjct: 301 VVSEIRRY--ESARVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAN-RTASWKS 357

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  VDWR G ++F  
Sbjct: 358 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWRHGADWFEH 417

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W   A+ G       R FN   Q K +DP G +++ W+PEL  +P  
Sbjct: 418 HLLDYDTASNWGNW--CAAAGMTGGRINR-FNIAKQTKDYDPSGDYVKRWIPELREIPAA 474

Query: 439 YIHAPHSWLD--KNDLSLNYPL 458
           YI  P+      ++ +SL+YP 
Sbjct: 475 YITEPNQAPRELRDRISLDYPN 496


>gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
          Length = 435

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 98/429 (22%), Positives = 179/429 (41%), Gaps = 19/429 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64
            L W R+DLR+ DN A+ A C     +V  ++I       P  +    +   +  F+  +
Sbjct: 17  GLYWFRHDLRLHDNAAISALCEAVQ-QVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQT 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++ L++ G      +     D  E L       + + L  +     +E  +   ++
Sbjct: 76  LVDLKRQLAKLGHDLLIVK----GDPAECLVQLMKSGQYSHLGVSEHCGFDERAQLNAVK 131

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +      + ++    +     ++  +  +M  V++PFR+ + ++     +          
Sbjct: 132 RFFDSVTVIETPTFGLF-DAQTLPFNIEEMPDVFSPFRRKVEKHCKPLSVHPPMDSLPSP 190

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQN---ALHILRKFCKEKVYYYVEQRDI-PAIQ 240
             P    +     D    +      +G +           F  +    Y + R+     Q
Sbjct: 191 FTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKAAATYKDTRNALDTWQ 250

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++LS +L+ G LS R+   ++++   +  ++     +    EL+WREF+  L   Y +
Sbjct: 251 DSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKNDSTYWIYFELLWREFFHWLQCKYGA 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I   +K            W +G TG+PI+DA MRQL   G+M NR R + AS 
Sbjct: 309 NWFRFGGI-QGKKPSTQHCPETFALWCEGKTGYPIVDACMRQLAETGYMSNRGRQLVASC 367

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            V +L  DWR G  +F  QL+D D+ SN G W + A  G+D   + R FN   Q + +D 
Sbjct: 368 FVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDS 426

Query: 421 QGTFIRHWL 429
            G F + WL
Sbjct: 427 DGQFCKKWL 435


>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
 gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
          Length = 433

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 113/438 (25%), Positives = 171/438 (39%), Gaps = 20/438 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSH 59
           + L+W R  LR+ DN +L AACH S   V  VF+  P        +           +  
Sbjct: 1   MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQ 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVR 118
           F+  SL  + ++LS +G            + I+W +   C +        +R  +I E  
Sbjct: 60  FLLESLQDLDRNLSSRGSKLLLVH----GNPIQWRIRKLCFEFDTEPYALDRDAKIKEHA 115

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +DK +E          + D  +    G          K   P  K +             
Sbjct: 116 KDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSSIPPTGDL 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIP 237
                +  P         F   F        +G       L        +   +      
Sbjct: 176 HGIKVVPVPTLEELGYTDFHEDFSPFRGGETVGLTRLEDSLANEKWVCEFEKPKGDPTAF 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               T+ LSPYL  G LS R  ++R+KE +            S   +L+WREF+      
Sbjct: 236 IKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAKSFTSPPV-SLEAQLLWREFFYTAAYA 294

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             +        P  ++I W  D  LL AW+ G TG+P IDAAM QL   GWMH+  R   
Sbjct: 295 TANFDKM-VGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWMHHLARHAV 353

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + D+ V W  G + F   L+D D + NNG W W +++   +  Y RI++P    K
Sbjct: 354 ACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRIYSPITFAK 412

Query: 417 RFDPQGTFIRHWLPELNN 434
           ++D QG +I+H+LP +  
Sbjct: 413 KYDRQGNYIKHFLPVIKG 430


>gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
 gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
          Length = 267

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 117/256 (45%), Positives = 149/256 (58%), Gaps = 13/256 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y  +RD P    TS LS +L  G LS R  W  L      L         ++  EL WR+
Sbjct: 8   YENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD 61

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            + +++         +        I+W  D  +   W++G TG+PIIDAAMRQLN  GWM
Sbjct: 62  -FYNMIYSTFPQQKEEAIQEKFRYIQWANDPEMFAKWQKGETGYPIIDAAMRQLNQTGWM 120

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIF
Sbjct: 121 HNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 180

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+
Sbjct: 181 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGENYPKPIVDY 240

Query: 464 KKACHHTLNQYYAAKK 479
             +   TL  Y  +K+
Sbjct: 241 ASSKKQTLFLYEVSKE 256


>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 655

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 176/549 (32%), Gaps = 86/549 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA   + A +  ++   P    +  +   +  ++      + K
Sbjct: 7   IYWFRTDLRLHDSPALKAALDLNPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQDDLSK 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             ++T + + +  +     RD  + +  +
Sbjct: 67  SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKVLEIAR 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +         L     L          +  +       +    R +P P        
Sbjct: 123 KSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSFPNPGD 182

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
           T     +        ++ +   G++ +   L     +     +E+               
Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTMEELGLKPATTAHRGGET 242

Query: 235 --------------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                                          Q T+ LSP++  G LS R  + R ++   
Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
               K      S   +L++R+ Y    A            P    I W+  S        
Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
                           Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 363 ITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW + T   +  ++R ++P    +++D +G  +R
Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FYRCYSPIAFPQKWDKEGKLVR 481

Query: 427 HWLPELNNVPTQYIHAPHSWL-----------------DKNDLSLNYPLPIVDHKKACHH 469
            ++PEL     +YI+ PH                            YP P+ D  +    
Sbjct: 482 KYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGDGSAAAEGSMKTYPKPMFDFAERRDI 541

Query: 470 TLNQYYAAK 478
            L     A 
Sbjct: 542 CLAGMKNAY 550


>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
 gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
          Length = 435

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 160/428 (37%), Gaps = 21/428 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61
           M   L+W R+DLR+ DN AL  A    +A ++ ++   P     + W+   +      FI
Sbjct: 1   MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SLL +   L   G            D    +        + KL     +   E R+  
Sbjct: 60  SESLLDLANRLEALGQQLVIR----IGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQY- 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                   + + +   +         L           P      + + + + R L  P 
Sbjct: 115 ----LALKQEVGEHRCEVWQSHTLFTLEQLPFALDELPPTFSQFRRRVQRLEWRPLYPPV 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQ 240
             L  P+  ++                        H+          +Y + R+      
Sbjct: 171 TELPKPLALTS-ETPPPVSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDDWS 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++LSP+L+ G LS R    +L+    +              EL+WRE+++ L   +  
Sbjct: 230 SSTKLSPWLAQGCLSARTAVAQLEAY--EAQHGANESTEWIQVELLWREYFQWLALAHGH 287

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                       +            W QG T +PI++AAM QLN  G++ NR R + AS 
Sbjct: 288 RLFAFTGTSGVRR-PCCFYPERFARWCQGQTPYPIVNAAMNQLNATGFLSNRARQLVASA 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV +L +DWR G  YF  QL+D D+A N G WQ+ A  G D   + R F+   Q   +DP
Sbjct: 347 LVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW-RHFDLDKQTALYDP 405

Query: 421 QGTFIRHW 428
            G F+R W
Sbjct: 406 DGAFVRQW 413


>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
           98AG31]
          Length = 579

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 188/564 (33%), Gaps = 115/564 (20%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV------------IAVFIATPE--------- 46
           SV +   RNDLR+ DN  ++ A  +S   V            + +++             
Sbjct: 4   SVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGLPG 63

Query: 47  -----------QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
                                +  F+  S+ ++Q  L Q+G        S    ++  + 
Sbjct: 64  YQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSIIQ 123

Query: 96  SYC------------LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
           +               +    ++    + +         +     H       +D   LP
Sbjct: 124 ALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPFLP 183

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ- 202
             +   +      + +   + L + L+    R + +P ++   P   ++   +       
Sbjct: 184 SKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKMDN 243

Query: 203 -----------AIDPMFPI-----------------------GEQNALHILRKFCKEKVY 228
                        D   P                        G +             V 
Sbjct: 244 ILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTGNPAPVR 303

Query: 229 YYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y + R+       +++ SP+L+ G LSPR+    L+E   +         +  L EL+W
Sbjct: 304 SYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWVLFELLW 361

Query: 288 REFYRHLMAFY-----------------------PSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           R+++  +   Y                             +       +      +    
Sbjct: 362 RDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPFQNLKMNQNQQGSRAINQAAS 421

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            W +  TG P +DA M +L   G+M NR R   ASFL KDL VDWRIG E+F SQLLD D
Sbjct: 422 RWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAEFFESQLLDYD 481

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            +SN G WQ+ A  GND     R FNP  Q K +D +G ++R WLPEL  VP + IH P 
Sbjct: 482 PSSNYGNWQYVAGVGNDPR-ASRQFNPIKQAKDYDAKGEYVRCWLPELAKVPQKSIHNPW 540

Query: 445 ---------SWLDKNDLSLNYPLP 459
                    S  +       YP  
Sbjct: 541 LLTSKQWEESVGENQRRPEGYPHR 564


>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 434

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/420 (25%), Positives = 164/420 (39%), Gaps = 13/420 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W RNDLR+ DN  L  A    +  ++ ++          G+  ++  FI  SL  +Q
Sbjct: 3   AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQ 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G      Q          +        V  +  ++     E R  ++L +RL  
Sbjct: 63  DDLQPLGQSLLVLQ----GSPELVIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERLHI 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   + +          L   L   + ++PFR+ + +NL +    S  +P +     VT
Sbjct: 119 PVTEHAGNTLFRRSDIKALCPELP--RSFSPFRRKVEKNL-EPLKPSRDLPQLPPPPAVT 175

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQLSPY 248
              IP     P   +             + +      +  Y E R+     +G+S LSP+
Sbjct: 176 FHRIPDAAVKPPVGLPLRG-GSSAGQRRLKQFLHSGAIRSYKETRNCLDPLEGSSTLSPW 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G LS R+    + E             +  + EL+WRE++ H               
Sbjct: 235 LALGSLSAREVAAAVHEHEAQEGANE--STYWLVFELLWREYFFHRALQDGVSLFRHGGR 292

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              +      +      W  G T  P+++A M QL   GWM NR R I AS L+ D  +D
Sbjct: 293 EG-KVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIHDFGID 351

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  ++DP G FI  W
Sbjct: 352 WRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIEKQTAQYDPDGVFIAKW 410


>gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
 gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
          Length = 420

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 188/421 (44%), Gaps = 35/421 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++  +++
Sbjct: 5   LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +   +G      +   ++   E       +                          L   
Sbjct: 60  AYRARGGALWVLEGLPWEKVPEAARRLKAK----------------------AVYALTSY 97

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                + D+ +     +  H L    +  P      +       R L V A        P
Sbjct: 98  TPYGRYRDAKVQEALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEAPLPAPEALP 157

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                          P+   GE+ AL  LR F + K+  Y E+RD    +G S+LSPY +
Sbjct: 158 KGPEEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFA 217

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +GVLSPR      +    +       GA  W+ EL+WR+F  HL+  +P +   +P  P 
Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL+ W+
Sbjct: 270 FQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
             EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++ W P
Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389

Query: 431 E 431
           E
Sbjct: 390 E 390


>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 447

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 172/425 (40%), Gaps = 14/425 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYA 63
           V + W  NDLRITDN AL  A  + +  +I V+I  P  +  +    R     +  F+  
Sbjct: 10  VGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL Q+   L+  G      + S     ++ +     +     +  +RQ    E ++  +L
Sbjct: 69  SLAQLSVDLNAVGQTLLVLRES----PLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAML 124

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++R +          ++      +      + K ++ FRK +       +L  +      
Sbjct: 125 QRRYRLISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRNLLPVCDLPPP 184

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             G        R                                 Y   +  +     ++
Sbjct: 185 PRGLKRDHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYKTVRNALDGWGNST 244

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L+ G LS  Q    L E   +         +    EL+WRE+++     + +   
Sbjct: 245 KLSPWLANGCLSVNQVLLALGEY--EAQYSANESTYWISFELLWREYFQWSAYLHGARLF 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +  I  ++K+           W +G T FP+++A M+QLN  G+M NR R ITAS LV 
Sbjct: 303 ARDGINGSKKLNTFYS-QRFMQWCEGSTPFPLVNALMKQLNVTGYMSNRGRQITASCLVN 361

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN   Q + FDP+G 
Sbjct: 362 ELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFNLDKQREIFDPEGD 420

Query: 424 FIRHW 428
           FI  W
Sbjct: 421 FIAKW 425


>gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus]
          Length = 420

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 188/421 (44%), Gaps = 35/421 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++  +++
Sbjct: 5   LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +   +G      +   ++   E       +                          L   
Sbjct: 60  AYRARGGALWVLEGLPWEKVPEAARRLKAK----------------------AVYALTSY 97

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                + D+ +     +  H L    +  P      +       R L V A        P
Sbjct: 98  TPYGRYRDAKVQEALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEAPLPAPEALP 157

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                          P+   GE+ AL  LR F + K+  Y E+RD    +G S+LSPY +
Sbjct: 158 KGPEEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPAYAEERDRLDGEGGSRLSPYFA 217

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +GVLSPR      +    +       GA  W+ EL+WR+F  HL+  +P +   +P  P 
Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL+ W+
Sbjct: 270 FQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
             EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++ W P
Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389

Query: 431 E 431
           E
Sbjct: 390 E 390


>gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
 gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
          Length = 433

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 174/433 (40%), Gaps = 21/433 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           LVW RNDLRI DN+ L  A   S  +++ V+I  P  +             ++ FI  S+
Sbjct: 7   LVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL   G      +        E L     +  V +++++R+    E      +E 
Sbjct: 66  TDLKKSLKALGGDLLVVK----GKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVED 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    +         L     L   ++         +  ++   +          I + 
Sbjct: 122 ALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPGQISVP 181

Query: 186 GPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPA-I 239
             +  S +P   D  F+    +D     GE + L+ L ++  EK     Y  +R++    
Sbjct: 182 DSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKRNLLTGF 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              SQLSP+LS+G +SPR+ +  LK    +             NEL++R+F+R +   + 
Sbjct: 242 NNNSQLSPWLSLGCISPRKVYWELKRYEHEKGGTDNINL--LFNELLFRDFFRFMFKKHS 299

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +        P +   E          WK G TG  ++DA M +L   G M  + R   A+
Sbjct: 300 TAYFVDIAQPMSLNAEQQVLFE---KWKNGETGIDLVDANMLELKHRGTMAYKGRQTVAA 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L+ +L + W  G  YF   L+D   ASN G W   A  G         FN   Q K  D
Sbjct: 357 YLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLDKQIKDSD 416

Query: 420 PQGTFIRHWLPEL 432
           P+G +I+ WL EL
Sbjct: 417 PKGDYIKVWLSEL 429


>gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 202

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/201 (65%), Positives = 162/201 (80%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WLNELIWREFYRHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAM
Sbjct: 2   WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 62  RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 182 VEHKQARIATLSAYEAARKGA 202


>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
 gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
          Length = 438

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 193/442 (43%), Gaps = 23/442 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISA 55
           M      +  LVW RNDLRI+D++AL  AC++ + K+I ++   P     +Q+       
Sbjct: 5   MPKKQTTNTGLVWFRNDLRISDHEALTTACNSHE-KIIGIYCFDPRHYLKDQFGFIKTGK 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  ++ ++QK+L    I     Q    +   + +     +  V  +++ +++   
Sbjct: 64  FRSKFLIETIEELQKNLETLNIELLVFQ----EKPEDIIPEIISEYSVKSVYFQKEWTQE 119

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----- 170
           E   +K + + +        +   +  P     +    + KVYT FRK+  +        
Sbjct: 120 EHDVEKEVRRLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVRELV 179

Query: 171 --QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
              + L +  +P               +      A        +         +  + + 
Sbjct: 180 NLPSPLPARNLPEKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKNLT 239

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +S+LS +L+ G +S RQ ++ +K+   +  I      +  + ELIW
Sbjct: 240 RYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFELIW 297

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F++++   + +       I     +EWN D   L+ W  G T +  ++A MR+++  G
Sbjct: 298 RDFFKYISLKHANKIFKLGGI-QNRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISNTG 356

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R    SF  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P  R
Sbjct: 357 FMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PRDR 414

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
            FN   Q +R+DP   +   WL
Sbjct: 415 KFNIKNQAERYDPNNEYQDLWL 436


>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 432

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 178/442 (40%), Gaps = 25/442 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56
           M       ++++W   DLR  D+++LY      D   +AVF+   + + Q     R    
Sbjct: 1   MPKKQK--INILWFTKDLRTRDSESLYNIMQE-DLPFLAVFVFDSDLFAQKQFGFRKIGK 57

Query: 57  -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  S+  +++ L++K I     Q    + +    +    +  + K+F  +++   
Sbjct: 58  YRARFLLESIEDLKQRLAKKNIPLLVRQ----NKTENVFEEIAKEFEIVKIFCQQEWTKE 113

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E      + K + +    KS+   +L P               T   K     L++ +  
Sbjct: 114 ETDLQTKIRKTVPYAFWEKSYSQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFE 173

Query: 176 -----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVY 228
                         +  +T  ++              FP GE              + + 
Sbjct: 174 TEQLICYKSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLS 233

Query: 229 YYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+     + +S+ SP+LS G LS    ++ +K    +         +    EL+W
Sbjct: 234 RYKETRNGLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLW 291

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F+R++   +  +   K  I    +   +    L++ WK G T    ++A M +L   G
Sbjct: 292 RDFFRYVSLQHKDLIFRKKGI-THRQYSASHHQELIRKWKNGETTSDFVNANMIELQKTG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WM NR R   AS+  K L  DWRIG  YF   L+D D+ SN G W + A  GNDS    R
Sbjct: 351 WMSNRGRQNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--R 408

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
            FNP  Q + +DP+  F R WL
Sbjct: 409 TFNPERQAELYDPKQEFRRLWL 430


>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
 gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
          Length = 566

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/251 (35%), Positives = 124/251 (49%), Gaps = 10/251 (3%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                T+ LSPYL  G +SPR  W+ L+    V+L  K      S   +L+WREFY    
Sbjct: 295 FMAPATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFYYLAG 354

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P+            +I W  D   L AW++  TGFP IDA M QL   GWMH+  R 
Sbjct: 355 YGTPNYDRM-AGNRICRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARH 413

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL V W  G   F  +L+D D A NNG W W + +      YFR++ P   
Sbjct: 414 AVACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMWLSCS-CFFYQYFRVYGPVSF 472

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           GK++D +G +IR +LP+L ++P +YI+ P +            + ++YP PIVDH  A  
Sbjct: 473 GKKYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDYPAPIVDHAVASK 532

Query: 469 HTLNQYYAAKK 479
             + +  AA  
Sbjct: 533 ECIEKIAAAYN 543



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R  LR+ DN AL  AC  + A V  VF+  P   +   + A +  F+  SL  +  
Sbjct: 7   ILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESLTDLDA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           SL  +G            D    + +     R  +L Y    E  
Sbjct: 66  SLRARGSSLLVLH----GDPARVIPAALEAWRCDRLCYEFDTEPY 106


>gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8]
 gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
           Thermophilus
 gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
 gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
 gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
           Chromophore
 gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
 gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus]
 gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8]
          Length = 420

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 121/421 (28%), Positives = 186/421 (44%), Gaps = 35/421 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++  +++
Sbjct: 5   LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +   +G      +   ++   E       + +   ++    +      RD  + + L   
Sbjct: 60  AYRARGGALWVLEGLPWEKVPEA----ARRLKAKAVYALTSHTPYGRYRDGRVREALPVP 115

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +        +               ++Y      L                    G   P
Sbjct: 116 LHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPREDPGLPLP 175

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                               GE+ AL  LR F + K+  Y E+RD    +G S+LSPY +
Sbjct: 176 E------------------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFA 217

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +GVLSPR      +    +       GA  W+ EL+WR+F  HL+  +P +   +P  P 
Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            +   W +D  L QAW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL+ W+
Sbjct: 270 FQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
             EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++ W P
Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389

Query: 431 E 431
           E
Sbjct: 390 E 390


>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 562

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 88/540 (16%), Positives = 155/540 (28%), Gaps = 75/540 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R  LR+ DN AL A    + +    VF+  P   +   + A +  F+  SL  
Sbjct: 11  TRSLIWFRKALRVHDNPALAAGIARAKSA-QPVFVLDPWFCKPSRVGANRMRFLLQSLRD 69

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L ++G            +    L   C   +V  + +    E     RD  +   L
Sbjct: 70  LDATLRERGSSLLVLH----GEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTAVRGAL 125

Query: 128 QH-------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +                + +        PP +       + K+  P         + A  
Sbjct: 126 ERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAALDAPKAMPAPF 185

Query: 175 RSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                    L   V      P+     ++            GE   L  LR+      + 
Sbjct: 186 TGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAIGGETEGLRRLRRQLSRTEWV 245

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +  Q+                    SP +   R      D      +             
Sbjct: 246 HTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDMLMTPSTTALS 305

Query: 290 FYRHLMAFYPSVCMGK------PFIPWTEKIEWNKDSHLLQAWKQ--------------- 328
            Y       P V   +       F    +  +          W++               
Sbjct: 306 PYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLVGAGTPNFDKM 365

Query: 329 ----------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD---------- 368
                           +  A         W+   +  +     +  L             
Sbjct: 366 EGNPICRQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIHHLARHAVACFLTRGD 425

Query: 369 ----WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
               W  G + F   L+D D A NNG W W + +      YFR++ P    K++D  G +
Sbjct: 426 LFVHWEWGRDTFDRDLVDADWALNNGNWMWLSCS-CFFYQYFRVYGPHSFAKKYDKDGAY 484

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++H+LP L N+P +Y++ P              + ++YP PIVDH  A    +++   A 
Sbjct: 485 VKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHATASKACIDKIATAY 544


>gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 187

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 118/187 (63%), Positives = 144/187 (77%)

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P++C  +PF+ WT  ++W ++   L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR
Sbjct: 1   MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q
Sbjct: 61  MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G+RFD QG FIR WLPEL  VP   IH P  W  KN+  L+YP PIV+HK A   TL+ +
Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180

Query: 475 YAAKKQS 481
             A+  +
Sbjct: 181 ERARSAA 187


>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
          Length = 476

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 185/454 (40%), Gaps = 26/454 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69
           + W R  LR+ DN+ALY A   S   V  ++I     Q  +   SA ++ F+   L  + 
Sbjct: 8   VHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDLD 66

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + G            D+   +  +C +  +T++ + +  EI    RD+ + K +  
Sbjct: 67  EGLKKYGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHR 122

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  KSF    L     ++        +      A I ++ Q       V A       
Sbjct: 123 MEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAKHFKLGS 182

Query: 189 TPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
               I +     F       P        GE+ AL +L+    +   + +   +      
Sbjct: 183 KKIIIFKKSILAFGVWGHQAPRSLPIYRGGERQALKVLQAKINDPTLFTLNGFNQGVKTK 242

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              T+ LS Y + G +S R  W   ++      I           ++++REF+ ++ A  
Sbjct: 243 LPHTTYLSAYQNYGCISTRHFWKAAEKLPESKTIM-------LRGQIMYREFF-YVAASQ 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +            +IEW K+   L AW++G TG+P IDA MRQL T G++H+  R   A
Sbjct: 295 VNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVA 354

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           SFL    L ++W  G+E F    +DGD A N G W W   +        +  +P    +R
Sbjct: 355 SFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFARR 414

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           +DP+G F R + PEL N+P +Y+ +P        
Sbjct: 415 WDPEGHFTRKYCPELKNMPLKYLFSPWEAPVNVQ 448


>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 441

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 104/434 (23%), Positives = 176/434 (40%), Gaps = 19/434 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56
           M+A       LVW   DLR+ DN  L  A      +++  F+     ++ +         
Sbjct: 1   MEAKHQ--TGLVWFNLDLRLIDNLTLIRAAEQCQ-QLVCCFVIDESWFKGNRYGLNGISQ 57

Query: 57  -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  +I  ++  +  SL Q G      +          + +      V  ++ +    + 
Sbjct: 58  PRWRYIQQAIADLAASLQQHGQQLIIRK----GQPTTEISTLISTLEVDAVYCSDDPGVY 113

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E RR   L KR  +    +  + ++L      L+  L+         +   + L +    
Sbjct: 114 ERRRWDTLVKRFPYITFERVSNHTLLTERE--LDFPLEELPATYSAFRKRFEPLAETFPS 171

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +  ++   P+    I        +    +         H+ + F      +Y E R+
Sbjct: 172 GQALSQLKALPPMPRRTIASEHTPFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRN 231

Query: 236 I-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  +++LS  L++G +SPRQ  + L+    +         +  + EL+WRE++ H 
Sbjct: 232 ALDNFADSTKLSAALALGNISPRQVIDALRNY--EATQGANESTYWIVFELMWREYF-HW 288

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                   + K      +K   +  S    AW QG T +PI++A M QLN  G+M NR R
Sbjct: 289 YLRRFQEKVFKFGGIQDKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGR 348

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS L+ +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN   Q
Sbjct: 349 QLVASCLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRG-SRRFNLDKQ 407

Query: 415 GKRFDPQGTFIRHW 428
            + +DP G FI+ W
Sbjct: 408 TQTYDPNGEFIKRW 421


>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
 gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
          Length = 427

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 170/425 (40%), Gaps = 18/425 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYAS 64
            L W R+DLR+ DN AL          ++ VF+  PE +R     +R        F+Y S
Sbjct: 3   GLFWFRHDLRLADNPALITLSRRCSKALM-VFVINPEWFRPAHYQSRHLGRFREEFLYQS 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +++ L +              + +  +   C +  +  +       + E ++   L 
Sbjct: 62  LRSLERELKKHKQRLVV----KVGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLS 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L+  V         L    S L      Y       +  ++         +  P    
Sbjct: 118 RTLRSEVSVSESFTLFL---RSQLAFDKTTYPATFSQFRKHVEKQNILPCIPISAPDSLP 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243
           T      +I    ++ +                    +  + +  Y + R+     Q +S
Sbjct: 175 TVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTRNDLDGWQFSS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L+ G +SPR     L     +          S   EL+WRE+++ +M +Y +   
Sbjct: 235 RLSAWLANGSISPRTVAAELDNY--EYRHGRSDSTQSMYAELLWREYFQWMMHYYGADMF 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               I  T  +         +AW+QG T FPI++A MRQLN  G++ NR R I AS LV 
Sbjct: 293 AFAGIKKTRPL-TTYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRGRQIVASCLVN 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L VDWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q   +DP G 
Sbjct: 352 ELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEKQADVYDPNGE 410

Query: 424 FIRHW 428
           F+  W
Sbjct: 411 FVERW 415


>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
 gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
          Length = 478

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 209/486 (43%), Gaps = 33/486 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63
           V+++W R+DLRI D++ L  A H +  +  AVF+                   +  F+  
Sbjct: 4   VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +  SL  +G+ F   +       I+WL     ++  T +F +      E R  + +
Sbjct: 63  SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWL----TERGATDVFLHEHPGFEERRDLEEV 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++ L H     S   ++        + +          ++      +    RS    +  
Sbjct: 119 QRALPHIHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSYD 178

Query: 184 LTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYY 229
                 P  +                  P      +   GEQ A            +++ 
Sbjct: 179 TVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLFT 238

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E RD + A   +S+LS +L+ G LSP++ +  + +  ++        ++    EL+WR
Sbjct: 239 YKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAILD--MEAANGRNESSYWLFFELLWR 296

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+++ LM    +    K  +     + W++D  L QAWK G TGFP++DAAMR+L   G+
Sbjct: 297 EYFQWLMLATDARLFTKQGLLDVAIV-WHEDKALFQAWKDGETGFPLVDAAMRELKATGY 355

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL K+L ++W  G  YF  QL+D D ASN G W + A  G D     R 
Sbjct: 356 MSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTDLRE-LRA 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FN   QG R+DP+G++ ++WL   + +P   ++ P           ++P PIVD +++  
Sbjct: 415 FNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDPVKLSAH----TDWPQPIVDLEESLE 470

Query: 469 HTLNQY 474
               + 
Sbjct: 471 RRKQEL 476


>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
 gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
          Length = 440

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 182/450 (40%), Gaps = 29/450 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55
           M     M+  LVW RNDLR  DN +LY AC  +D  VI ++   P  +            
Sbjct: 1   MFKNKIMN-GLVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEK 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  ++ ++QK+L +K I    +    +      +     + ++  ++   ++   
Sbjct: 59  FRSQFLLETVTELQKNLLEKNIRLLVY----YGYPEILIPEIIAKYQIHSIYSQHEWTSE 114

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174
           E   ++ +   +        +D  +  P         ++ +V+T FRK + + +      
Sbjct: 115 ENEIEQEIRNLISAVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTV 174

Query: 175 ----------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                          P   L      S    F      A                  +  
Sbjct: 175 AISPKPLTNLIEETTPIPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDT 234

Query: 225 EKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +K+  Y + R+       +S+LS +L+ G +S R  +  +++   +  +      +  + 
Sbjct: 235 KKLAVYKKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEVQK--FEKKVIKNEDTYWLIF 292

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           ELIWR++++++   + +       I   E   WN++      W  G T    ++A M +L
Sbjct: 293 ELIWRDYFKYISLKHGNKIFQLNGILQKEYH-WNQNKKAFNQWANGTTPEHFVNANMIEL 351

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWM NR R   AS+  K+   DWRIG  YF S L+D D+ SN G W + A  GND  
Sbjct: 352 QKTGWMSNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND-- 409

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWL-PEL 432
           P  R FN   Q + +D  G F + WL PEL
Sbjct: 410 PRDRKFNIKRQAEMYDADGKFQKMWLIPEL 439


>gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 596

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/552 (21%), Positives = 189/552 (34%), Gaps = 114/552 (20%)

Query: 8   SVHLVWLRNDLRITDNKALYA----------ACHNSDAK--VIAVFIATPEQW------- 48
           ++ L   RNDLR+ DN  L            A   +     V+ +++    Q        
Sbjct: 9   TIAL--FRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66

Query: 49  -------------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
                              + + +F+  S+ +++  L + G             +++ ++
Sbjct: 67  YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKIIE 126

Query: 96  SYCLQ-QRVTKLFYNRQYEINEVRRD-----------KLLEKRLQHRVICKSFDDSVLLP 143
                   V  ++  ++    EV  +             +   L H       DD     
Sbjct: 127 ELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLPFTI 186

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--------------------- 182
             +   +     KV +     L + L+    +  P PA+                     
Sbjct: 187 NKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSLCEGQ 246

Query: 183 ---------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE----QNALHILRKFC 223
                              P  P         P       +  GE    +       K  
Sbjct: 247 GFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYFFKGN 306

Query: 224 KEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  V  Y   R+     Q +++ SP+L+ G +SPR+  + L +   +         +  L
Sbjct: 307 QPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDTYWVL 364

Query: 283 NELIWREFYRHLMAFYPSVCM--------------------GKPFIPWTEKIE----WNK 318
            E++WR+++  +   +                          KPF       +       
Sbjct: 365 FEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKGKETP 424

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                 AW +G TG P IDA M +L   G+M NR R   ASFL KDL +DWRIG E+F S
Sbjct: 425 VDRNALAWLRGKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAEWFES 484

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D  SN G WQ+ A  GND     R FNP  Q K +D QG +++HW+P+L + PT 
Sbjct: 485 ALLDYDPCSNYGNWQYVAGVGNDPR-TSRQFNPIKQAKDYDSQGDYVKHWIPDLKSFPTN 543

Query: 439 YIHAPHSWLDKN 450
            I +P     + 
Sbjct: 544 RIQSPWLMNSQE 555


>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
 gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
          Length = 476

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 181/441 (41%), Gaps = 23/441 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSH 59
            TA++  L W R+DLR+ D  AL AAC    + ++ V+     +    W    +   +  
Sbjct: 41  RTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA 100

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR- 118
            + A+L  + + L+  G               + L +       + +         E   
Sbjct: 101 VLAAALRDLARQLADLGTRLV----ECCGPPGKVLPALARAVGASTVVCEDIAAPYEQAE 156

Query: 119 ---------RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
                    + + + +      +C  +    L    +    AL+  ++      +    L
Sbjct: 157 VAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPSTPLSPPTRL 216

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVY 228
                  +  P +R    V    +       F    P F  GE   L    +   ++  +
Sbjct: 217 PPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQYLERQLPH 276

Query: 229 YYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y   R+    +  +S+ SP+L+ G LSPR+  + L++   +       G++    EL+W
Sbjct: 277 TYKRTRNALAGVDFSSKWSPWLATGALSPRRVISELQQ--FEQSHGQSDGSYWLWFELLW 334

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R L   + +       +    +     D    + W++  TG P++DAAMR+L T G
Sbjct: 335 RDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAMRELETTG 394

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ NRLR + AS+LV +L  DWR G  +F SQL+D D+ SN G W + A  G D     R
Sbjct: 395 YLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGTDPRG-GR 453

Query: 408 IFNPTIQGKRFDPQGTFIRHW 428
            FN   Q   +DP G+++R W
Sbjct: 454 RFNVRKQAAEYDPDGSYLRLW 474


>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 309

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/277 (40%), Positives = 148/277 (53%), Gaps = 7/277 (2%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNR 262
           +   +  GE+ A   L +F +  +  Y  QRD       TS LSPY+ +G +S RQ W+ 
Sbjct: 39  LPSGWTSGEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWHA 98

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           ++           + A  +L EL WR+F    M   P +          + + W  D+  
Sbjct: 99  IRHAEHQ-NPHLATPAEKFLAELGWRDFAWMQMFTTPDLATRN-LRAEFDHMPWRADAAD 156

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW+QG TGFP++DA MRQL   GWMHNR+RM+ ASFL K LL DWR GE +F +QLLD
Sbjct: 157 LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLLD 216

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A N   WQW A TG D+ P+FRIFNP  Q +++DP G +IR W+PEL  +  + IH 
Sbjct: 217 ADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIHT 276

Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P     +    L YP PIVD K      L  +    K
Sbjct: 277 PWKSTQR----LKYPAPIVDLKLGRLRALENWKNLPK 309


>gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 527

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 118/531 (22%), Positives = 194/531 (36%), Gaps = 69/531 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A ++  P +  +         +++ +L  + +
Sbjct: 3   VVWFRQDLRVRDNPALHAAARTG-RPVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61

Query: 71  SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +L    G V      +    S E L           ++ NR YE  ++ RD   EK L  
Sbjct: 62  TLTRTYGAVLVLRDATRT-SSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALAS 120

Query: 130 RV--ICKSFDDSVLLPPGSILNHALQMYKVYTPF----------------------RKAL 165
                 +SF+  VL  P      A       + +                        ++
Sbjct: 121 ECGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASM 180

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
              L                  +               I   +  GE  A   LR F  E
Sbjct: 181 RARLPVERRPRSVALESLGLAKMPRRRGGGGVIDWAAGIRDAWTFGEDGADASLRAFLAE 240

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            + ++  +R   A   T+++SPY+  G LS R+ +   K   V         A  +L  L
Sbjct: 241 GLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRRL 297

Query: 286 IWREFYRHLMAFYPSVCMGKPF------------------------------IPWTEKIE 315
            WR+     +  +P +                                        +   
Sbjct: 298 AWRDLAYWSLWRFPHLADEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDVFA 357

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
              +   L+AW++G TG+P++DAAMR+L   G++ N +R + A FL++ L +DWR G+ +
Sbjct: 358 PCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQLW 417

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   L+D D+A     WQ    +G D   +  + +P    K  DP G ++R W PEL+ +
Sbjct: 418 FHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELSKL 475

Query: 436 PTQYIHAPHSWL------DKNDLSLNYPLPI-VDHKKACHHTLNQYYAAKK 479
           P  Y H P              L   YP  + VD + A   +L      ++
Sbjct: 476 PRDYAHCPWEAPATTLARAGVALGREYPKRVLVDLEGARLKSLRAVVEVRR 526


>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
 gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
          Length = 432

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 190/437 (43%), Gaps = 24/437 (5%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60
           M+   LVW RNDLRI D  +L  A    ++ V+AV+   P  + +           ++ F
Sbjct: 1   MTKTGLVWFRNDLRIHDQVSLVKAAKE-NSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +Q  L++  I    H    F+   + +  Y    +VT ++  +++   EV   
Sbjct: 60  LIETVSDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVS 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQAD 173
             ++K L + V      D  L  P  I     ++ +V+T FRK   +         +   
Sbjct: 116 SAVKKALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEKYAQIRELETISKM 175

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                V  +     +    +P F      A                  +  +K+ YY + 
Sbjct: 176 PEKNRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKT 235

Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+       +S+ S +L+ G LSPR  ++ +K+   +  I      +  + ELIWR+F++
Sbjct: 236 RNGLVGTAYSSKFSAWLANGSLSPRMIYHEVKKY--ESEIIKNQSTYWMIFELIWRDFFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   + +       I   +  EWN DS L+Q W  G T  P ++A M +L   GWM NR
Sbjct: 294 YISLKHGNNIFKLEGI-LHKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   AS+  K L +DWRIG  YF S L+D D+ SN G W + +  GND     R FN  
Sbjct: 353 GRQNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGNDPRN--RTFNVK 410

Query: 413 IQGKRFDPQGTFIRHWL 429
           +Q +R+D    F   WL
Sbjct: 411 LQAERYDANKKFQNLWL 427


>gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
 gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
          Length = 456

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 212/478 (44%), Gaps = 29/478 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    RI  N  L   C+  D     V I   E++     +  ++ F + +L 
Sbjct: 1   MKVGVI-LNRVFRIHHNPLLAYICNQLDTTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
               +L+   I           +    + LD   +   +    +      ++ +R     
Sbjct: 58  AFINTLNHYQIQTNVIDYDYLIEFCINQQLDKVVMASDIMSYHHESYDYPHQKQRFHDAG 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +    +   F            N+  + YKV+T F K     ++Q       +  I  
Sbjct: 118 IHVDALRVQHYFSP------RKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDISK 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   I      P Q  D    + E+      + F    +  Y   R       TSQ
Sbjct: 172 --------IVEPAYAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTSQ 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L+ G++   Q +N L +         +S   +++ ELI+REFY  LM  YP     
Sbjct: 224 LSIALAYGLIDILQVFNDLLQ----GYESDESNYEAFIRELIFREFYYVLMTQYPETAH- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F      I+W  D      WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL KD
Sbjct: 279 QSFKEKYRNIDWVNDKQQFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +
Sbjct: 339 LLIDWRWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNALY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLP  NNV +  +H     +        +L ++YP P+V+H  +    ++ + + 
Sbjct: 399 IKQWLPTFNNVDSHLLHDTKKHMQLLKQQGIELGIDYPEPMVNHSDSRQRVMSLFKSL 456


>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
 gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
          Length = 432

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 101/436 (23%), Positives = 188/436 (43%), Gaps = 24/436 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64
           +LVW RNDLR+ DN +L+ A  N++  + AV+   P Q+++           ++ F+  +
Sbjct: 3   NLVWFRNDLRVKDNTSLFKASKNANL-LAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++++ L++  I    +     +   + L     + ++ +LF+  ++   E    + ++
Sbjct: 62  VTELREHLAELNIPIFVYN----EQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVK 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +     V      D  L+ P  +   +++         +   +  +            + 
Sbjct: 118 ESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFPQT 177

Query: 185 TGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236
                 ++IP           P       F  GEQ AL+ +  +  +      Y + R+ 
Sbjct: 178 NFEENSTSIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKKTRNG 237

Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 +S+LS +L+ G +S R  + ++K    +         +    EL+WR+F++++ 
Sbjct: 238 LTGKNYSSKLSAWLANGGISARTIYWKIKA--FEQEETKNESTYWLFFELMWRDFFKYIS 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y         I   +  +W  +    + W  G T +  ++A M+++   GWM NR R 
Sbjct: 296 LKYGDQIFKIGGILEKDY-DWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSNRGRQ 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             AS+  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN   Q 
Sbjct: 355 NVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNIKSQA 412

Query: 416 KRFDPQGTFIRHWLPE 431
           +R+D  G F R WL E
Sbjct: 413 ERYDGDGKFRRLWLQE 428


>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
 gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
          Length = 429

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 183/437 (41%), Gaps = 24/437 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           MS  L+W  N+LR+ DNKAL+ AC   + +VIAV+   P ++++           ++ F+
Sbjct: 1   MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +Q++L+Q  I              E +       ++  +++  ++   E +   
Sbjct: 60  IESIKNLQENLNQLNISLLIF----LQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+K+L        +   +  P         ++ KVYT FRK   Q +       +P   
Sbjct: 116 ALKKKLPTIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQK 175

Query: 182 IRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
                    S  P                   F  GE  A   +  +  +      Y + 
Sbjct: 176 PESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSEYKQT 235

Query: 234 RDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+       +S+LS +L+ G +S    ++++K+   +  I      +  + ELIWR+F++
Sbjct: 236 RNGLLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHE--ITKNQDTYWLIFELIWRDFFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +    + +       I   +K++W      LQ W  G T    ++A + ++   G+M NR
Sbjct: 294 YTSLKHGNSIFKLSGI-LDKKLDWKFSIESLQQWINGETKEDFVNANINEIAATGFMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R    SF  K+L  DWR G  YF S L+D D+ SN G W + +  GND  P  R FN  
Sbjct: 353 GRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHWL 429
            Q   +DP   ++  WL
Sbjct: 411 KQADLYDPDNQYVDTWL 427


>gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 456

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 138/479 (28%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    RI  N  L   C+   +    V I   E++     +  ++ F + +L 
Sbjct: 1   MKVGVI-LNRVFRIHHNPLLAYICNQLGSTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
               +L+   I       ++       L ++C  Q++ K+        Y           
Sbjct: 58  AFINTLNHYQIQTNVMDYNH-------LIAFCKNQQLDKVVMASDIMSYHHESYDYPHQK 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  +  +  ++        P    N+  + YKV+T F K     +++       +  I 
Sbjct: 111 QRFQEAGIKVEALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDIS 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             G             P Q  D    + E+      + F    +  Y   R+      TS
Sbjct: 171 KIGEPA--------YAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++   Q +N L           +S   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLIDILQVFNDLL----HGYESNESNYEAFIRELIFREFYYVLMTQYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      IEW  D      WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL K
Sbjct: 279 -QSFKEKYRNIEWVNDKQQFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DW  GE YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP   
Sbjct: 338 DLLIDWTWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ WL  LN+V +  +H     +         L ++YP P+V+H+ +    ++ + + 
Sbjct: 398 YIKQWLSTLNHVDSHLLHDTQKHMQLLKQQGIQLGVDYPEPMVNHQYSRQRVMSLFKSL 456


>gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435]
 gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 457

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 227/476 (47%), Gaps = 24/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N  L+   H +   +   ++  P++  +   +  ++++ +  + 
Sbjct: 1   MTIGVI-LNRVFRINNNP-LFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
                L Q  I       S+  D  +  D    +  V     +   E  ++R  K     
Sbjct: 59  SFLNDLRQYDIEPFLLDYSDLGDFCD--DKSINEVIVAGDIMSYHQESYDIRHLKKAFN- 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +H +   +   +    P + +N   + YKV+T F KA    L      S       L+ 
Sbjct: 116 -KHNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKL--RKHDSYAYKLKDLSD 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S      DY    +     I           +  + +  Y   R+      TSQLS
Sbjct: 173 LFVKSQQKLNQDYSKFGLSESKAI------KKWNDYIDQDIQNYETNREYLPEVLTSQLS 226

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G++  +Q   +L E + +     +     ++ EL++REFY  LM  YP+    + 
Sbjct: 227 IILAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTAH-EA 281

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F      I+W  +    ++W +G+TGFPI+DAAM +LN  G+MHNR+RM+ + FL KDL 
Sbjct: 282 FNEKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTKDLF 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE+YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP+ Q +RFD    +I+
Sbjct: 342 IDWTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDALYIK 401

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++P+LN+V  + +H P +   + +     L  +YP P+VDHK+A  H ++ +   
Sbjct: 402 TFIPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMSVFKQI 457


>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 431

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 168/430 (39%), Gaps = 24/430 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF------IATPEQWRQHGISARQSHFIY 62
           + L W  NDLR+TDN  L+ A    D ++I ++          +   Q    A ++ F+ 
Sbjct: 5   IGLYWFTNDLRLTDNPLLHKASKEVD-QLICLYTRPQLTCFLQKYSCQERWGAARTLFLN 63

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL   G                 L     +  V+ L+ N+    +E    + 
Sbjct: 64  QSLRNLSESLDDVGQQLTVVDEPTIG----TLSDLVTKHEVSDLYCNQFAGFDEQSVIEQ 119

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L +     +I ++  + +                          + LV+       V   
Sbjct: 120 LGRNFSDLIIHQNSSNHLYSEEQLPFALNGLPNTFTK------FRKLVEGISLRELVEVP 173

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQ 240
           RL  P+             Q     F  GE   +    ++   K     +  R+      
Sbjct: 174 RLPPPIKSVGRGVQIPAEKQMQSVEFLGGEVFGMDHCLRYFSTKRASEYKLTRNGLDGPS 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G +SPRQ    L++   +         +    EL+WREF+      +  
Sbjct: 234 YSTKFSPWLAHGCISPRQVLEVLRDY--EQKNGANESTYWIFFELLWREFFYWYARRWGK 291

Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  I    K   +    S     W +G T FPI++A M QL   G+M NR R + A
Sbjct: 292 NLFLYSGIKTCSKPAAKGTSVSTAFSNWIEGKTDFPIVNACMNQLRKTGFMSNRGRQLVA 351

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D+ P  R FN   Q + +
Sbjct: 352 SCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGVGADTQPA-RQFNLGKQTEIY 410

Query: 419 DPQGTFIRHW 428
           DP+  FI  W
Sbjct: 411 DPKREFIMQW 420


>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
          Length = 691

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 110/577 (19%), Positives = 183/577 (31%), Gaps = 113/577 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA       +  ++        +  +   +  F+      V +
Sbjct: 7   IYWFRTDLRLHDSPALKAALDLKPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQNDVSE 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +      ++  L       ++T L + +  +     RD+ +     
Sbjct: 67  SITKLNQKSKLFVLREP----AVTLLPKLFKAWKITHLVFEKDTDAYARERDEKVMHMAG 122

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              +            P  I+ +      +     +     + + +       ++     
Sbjct: 123 EAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQLQHAGNKIGEIEEPVETPTSLPDPGE 182

Query: 186 ---------------------------------GPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                                            GP    + P   +    A       GE
Sbjct: 183 MKLEIEHTEPEAEPDINAKHREKDTVTFSSGIAGPKGDFSPPTLEELGMPAATSPHKGGE 242

Query: 213 QNALHILRKFCKEKVYYYVEQRDI-----PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-- 265
              L  L +  K++ Y    Q+          Q T   SPYL  G LS R  ++R+ E  
Sbjct: 243 SVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLTSPYLHFGALSCRYFYHRVAEIV 302

Query: 266 -EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--- 321
            +         S   S   +L++R+ Y    A                 I W+  S    
Sbjct: 303 AKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQFGQTLGNSHCRFIPWHLPSKVDM 362

Query: 322 ----------------------------------------LLQAWKQGYTGFPIIDAAMR 341
                                                    LQ W  G TGFP ID  MR
Sbjct: 363 SSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEETELWLQRWTHGTTGFPWIDVIMR 422

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL +    + W  G E F   L+D + A N G WQW + T  
Sbjct: 423 QLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEELLIDHESACNIGNWQWLSCTAF 482

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------- 451
            +  ++R ++P   GK++D  G FIR ++PEL + P +YI+ PH     +          
Sbjct: 483 FAQ-FYRCYSPVAFGKKWDENGDFIRKFVPELAHFPKKYIYEPHKAPLADQKKAGVRVDG 541

Query: 452 -----LSLN----YPLPIVDHKKACHHTLNQYYAAKK 479
                   +    YP P+ D  +     L    AA +
Sbjct: 542 DGSETKGKDGLALYPKPMFDFNERREICLRGMKAAYR 578


>gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 457

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 138/479 (28%), Positives = 218/479 (45%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N          DA      I   E + + G   +++++ Y +L 
Sbjct: 1   MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I       S           +C +  + ++        Y         L 
Sbjct: 59  KFLYKLKEHHIEPYVIDYSELG-------MFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +    H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+ D         AL+  + +    +  Y + R+      TS
Sbjct: 172 NKCSQSQQTITNDYHHDGQSED--------QALNNWKDYLNHSIQNYKKDREYLPEILTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +          S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEENES----NYESFIREVMFREFYYVLMAQYPHIAH 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 280 -EAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P  ++VP + +H P             L  +YP PIVDHK A  H +  +   
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFKNI 457


>gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 322

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 118/286 (41%), Gaps = 14/286 (4%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLK 264
           M   G + A+  LR F   +   Y+     P       S+LS +L+ G LS R+    + 
Sbjct: 1   MQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIV 60

Query: 265 EEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           +    L             ++ + L WR  +   +   P +        +        + 
Sbjct: 61  KRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETHCMHPAFEGLRVGEHND 120

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              QAW  G TG+P +DA MR L   GW+  R+R +  SF    L +DWR+  E+     
Sbjct: 121 LHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARLF 180

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
            D +   +    Q    +G   +   R++NP  Q    DP+GTFIR W+PEL +VP ++I
Sbjct: 181 TDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEFI 238

Query: 441 HAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           H P  W           L  +YP P+VD   +      Q  A +K 
Sbjct: 239 HEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 284


>gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 302

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 20  WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 79

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 80  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 137

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 138 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 197

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 198 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 257

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 258 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302


>gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 505

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 166/487 (34%), Gaps = 21/487 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + +  L+ +LR+ D+   Y A         V+ ++I  P   RQ  I  +  +FI+ +L 
Sbjct: 1   MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + +   G            +++  LD       + ++  +++             ++
Sbjct: 61  ELSQEIRSIGGKLL----ELVGEAVPTLDVIHQIAPIARICTHQETTQGVQYERDKAVRK 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              R   K  +        +      +             +      +      A     
Sbjct: 117 WCSRNSVKLVEFQQDGVVRAGCRDQKKQTFPEYFADSVNRELKDPGGIDLGVRFASTPLP 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 IPR   Y             +              Y +       A +G S++S
Sbjct: 177 SAPRVTIPRAQGYDRPFRQRGGRSEAEKLFKDFFSVGSINSYPFKLSSPNTAWEGCSRIS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------SWLNELIWREFYRHLMAFY 298
            YLS G++S R     + +          + AF         +L+ L+WR  Y  +    
Sbjct: 237 AYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLMWRRNYLQMFEDD 296

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++        +      +++  L +AW+ G TGFP IDA +R L   GW++ R R    
Sbjct: 297 PTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKETGWLNMRGRAAIT 356

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF   +L  D      +   + LD     +    Q  + T         ++ P  Q    
Sbjct: 357 SFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGT-ASPQNGIMVYCPMKQALDH 415

Query: 419 DPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           D  G FIR ++PEL+++   +IH         S L +    L YP PIVDH         
Sbjct: 416 DKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSDLARRSGFLPYPAPIVDHIATARVAKK 475

Query: 473 QYYAAKK 479
           +    +K
Sbjct: 476 RVSYLQK 482


>gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
 gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
          Length = 457

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 138/479 (28%), Positives = 218/479 (45%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N          DA      I   E + + G   +++++ Y +L 
Sbjct: 1   MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I       S           +C +  + ++        Y         L 
Sbjct: 59  KFLYKLKEHHIEPYVIDYSELG-------MFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +    H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+ D         AL+  + +    +  Y + R+      TS
Sbjct: 172 NKCSQSQQKITNDYHHDGQSED--------QALNNWKDYLNHSIQNYKKDREYLPEILTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +          S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKENES----NYESFIREVMFREFYYVLMAQYPHIAH 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 280 -EAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P  ++VP + +H P             L  +YP PIVDHK A  H +  +   
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFKNI 457


>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
 gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas
           ingrahamii 37]
          Length = 448

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 162/433 (37%), Gaps = 20/433 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61
           M   L W+  DLRI DN AL  A  +   +++ V++          ++   +   +  F+
Sbjct: 1   MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L    +SLS+ G          + D++  L   C   ++T +   +     E R   
Sbjct: 59  QGCLEDFNESLSKLGQAMHI----VYGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L +RL    I +    ++                     +K     + +       +P+
Sbjct: 115 QLNERLPELTIDQVDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLPS 174

Query: 182 IRLTGPVTPSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +  T P      P +          Q  +      +                Y   + ++
Sbjct: 175 MFDTLPAPTRFKPEWLPTVSAIKAKQGFEFEGGEQQGLKHLRQYFSSNSPAEYKQVRNNL 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
              + +S+LSP+L+ G +S RQ  N L E   +      S       EL+WRE+Y+ +  
Sbjct: 235 DGWKNSSKLSPWLNSGCISVRQVMNNLAE--FEQQHGKNSSTECLYLELLWREYYQWVHY 292

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              +       +     +           W  G T + +++A M +L   G++ NR R I
Sbjct: 293 KVGAKTYQFKGLAKHRPLTTFYP-ERFNKWCLGNTPYSLVNAFMHELRQTGYLSNRGRQI 351

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS LV +L VDWR G  +F  QL+D D A N G WQ+ A  G D     R FN   Q  
Sbjct: 352 VASCLVNELSVDWRYGAAWFEEQLIDYDAAVNWGNWQYIAGVGVDPRG-GRHFNIEKQTT 410

Query: 417 RFDPQGTFIRHWL 429
            +DP G +   W+
Sbjct: 411 LYDPNGDYQAQWI 423


>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
 gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/569 (18%), Positives = 177/569 (31%), Gaps = 103/569 (18%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L W R DLR+ D+ AL+AA   + +  I ++   P    +  +   +  F+      
Sbjct: 3   PVVLYWHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRTRVGPNRWKFLLECQSD 62

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-E 124
           +  + +           +    +     L     + ++T L + +  +     RD+ +  
Sbjct: 63  LSAAYTTLNPKQRLWVVR----EAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVLR 118

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 V         L  P  ++        +     +   + +              +
Sbjct: 119 MARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMSIAQVQKAAEKIGDGTPAQPLEAPQSV 178

Query: 185 TGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             P     +             P        + D  +               +E      
Sbjct: 179 PDPWKWEKMGLDGLGQDVVDARPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDGS 238

Query: 232 EQRDIPA----------------------------------IQGTSQLSPYLSIGVLSPR 257
             R                                       Q T+ LSP+L  G LS R
Sbjct: 239 LARSPHRGGETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVR 298

Query: 258 QCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           + W  ++   ++         S   +   +L++R+ Y    A             +   I
Sbjct: 299 KFWWDVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFI 358

Query: 315 EWNKDSH------------------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +W+  ++                          + WK+G TGFP IDA MRQL   GW+H
Sbjct: 359 DWHLPTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIH 418

Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL +    V W  G E F   L+D + A N G WQW + T      Y+  +
Sbjct: 419 HLGRHSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCT-AFYSQYYHCY 477

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------- 455
           +P   GK++DP+G F+R + PEL N   +YI+ P      +                   
Sbjct: 478 SPIAFGKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGDGSGSDDSK 537

Query: 456 ------YPLPIVDHKKACHHTLNQYYAAK 478
                 YP P+ D  +     L+    A 
Sbjct: 538 HEGLAVYPKPMFDFDERRRICLDGMKHAY 566


>gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 299

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 17  WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 76

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 77  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 134

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 135 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 194

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 195 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 254

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 255 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894]
          Length = 299

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 17  WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQL 76

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 77  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 134

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 135 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 194

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 195 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 254

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 255 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
 gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
          Length = 436

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 191/442 (43%), Gaps = 24/442 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55
           M+     +  L+W RN+LR  DN ++  A  N D KVIA++   P+ +++          
Sbjct: 1   MQKKQN-TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAK 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  ++  +++ L    I       + FD     L +     +V  ++  +++   
Sbjct: 59  FRAQFLLETITDLKQQLKDLNITLL----TYFDAPENQLLNITETYKVDTIYTQKEWTKE 114

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------- 168
           E+  +KL+ K +   V      D  L  P ++ N+   +  V+T FRK L +        
Sbjct: 115 ELDTNKLVLKTMSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEI 174

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           L+     S  +        +       F      A                  F  +KV 
Sbjct: 175 LIDKHDDSNLIHNPTEIPSLKELGFNDFVMPKKSAFPFKGGETAALERLNYYLFESKKVG 234

Query: 229 YYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           +Y + R+       +++ SP+L+ G LS R  + ++K+   +         +  + ELIW
Sbjct: 235 FYKKTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKKYEAEFGSNQ--STYWVIFELIW 292

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++++   Y         I      +WN D + +Q W  G T    ++A M +L   G
Sbjct: 293 RDYFKYISLKYGYEIFKIGGI-LERNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETG 351

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WM NR R   AS+  K+LL DWRIG  YF S LLD D+ SN G W + A  GND  P  R
Sbjct: 352 WMSNRGRQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
            FN  +Q +R+D    F + WL
Sbjct: 410 KFNTQLQAERYDANHKFRKLWL 431


>gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
 gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
          Length = 321

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/269 (37%), Positives = 149/269 (55%), Gaps = 12/269 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE      L  + +  +  Y +++D  A   TS+LSP+L  G LSP +  +R +     
Sbjct: 62  GGETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARRAGG- 120

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                  GA +++ +L WR+F+R ++A  P+                      ++AWK+G
Sbjct: 121 ------PGAEAFVRQLAWRDFHRQVLAARPAAAGADYRTQHDRWRSERTAGDDIEAWKEG 174

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+PI+DAAMRQL   GWMHNR R++TASFL K L VDWRIG  +F+  L+DGDLA+N 
Sbjct: 175 RTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLANNQ 234

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A TG D+ P  R+ NP  Q KR+DP GT++R W+PEL  +    +H P      
Sbjct: 235 LNWQWMAGTGTDTRP-NRVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKLRGL 293

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  +L+YP P+V+  +     L ++  A+
Sbjct: 294 DRAALDYPDPLVELSEG----LARFKRAR 318


>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 554

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/482 (22%), Positives = 169/482 (35%), Gaps = 30/482 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + +VW R DLR+ D+ AL+ A   S+  V+ +FI  P   +       +   +  +L 
Sbjct: 1   MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L Q            + +    L S     R   +  +   E    R    +   
Sbjct: 59  ALDHELKQLASRLLVR----WGEPAACLLSVVKAYRADAVLAHVDSE----RIVGRVRDA 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                + ++      + P   L   +        +   +    + A  R L  P     G
Sbjct: 111 RVQGQLQQAGVPLRWIEPPGGLEELVPYPAYRRFWHGVMAAEPLPAPGRLLTPPPA--AG 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQ 244
             T + +P              P G   A     +    +     Y  Q   PA + +S 
Sbjct: 169 ESTAAAVPSLEALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYWQLSYPAARASSG 228

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS-VCM 303
           +SPYL  GVLS RQC   +           +      ++ L W         + P     
Sbjct: 229 ISPYLKFGVLSHRQCLRAI-APLRRGDAGRQRSWRQLVSRLRWGAGMAQRFRYLPQLELE 287

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT---IGWMHNRLRMITASF 360
                   + +  +    +   W++G TGFPI+DA  R L        ++ R R I ASF
Sbjct: 288 PLWRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCLLATGGWRDLNFRSRAIHASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST--GNDSVPYFRIFNPTIQG-KR 417
           L     +DWR G  ++M  LLDGD   ++  W   A    G     + RI++P      R
Sbjct: 348 LTNLCGIDWRYGALHYMRHLLDGDCPIDHYQWAMQAGVTAGGTGA-WTRIYHPGQVAVNR 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP G FIR WLPEL  +    +  P +        L+Y       + A    L    A 
Sbjct: 407 CDPHGVFIRRWLPELAELTNDQLGLPPAMAAYPPPMLDY-------ETARRDRLRSLEAR 459

Query: 478 KK 479
           ++
Sbjct: 460 RQ 461


>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
          Length = 487

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/400 (26%), Positives = 175/400 (43%), Gaps = 17/400 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+     + +       LPPG ++  +   + V+TP+ +      ++  L     P    
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 S+     +        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R             +GA +++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAAHE 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                       +   H   AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K 
Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P
Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385


>gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum]
          Length = 147

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 119/145 (82%)

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW
Sbjct: 1   IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L
Sbjct: 61  AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP PIV+HK+A   TL  Y AA+K
Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145


>gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 291

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 9   WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 68

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 69  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 126

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 127 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 186

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 187 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 246

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 247 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291


>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
 gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
          Length = 461

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQTIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula]
          Length = 576

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 160/353 (45%), Gaps = 19/353 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P  + +   + +  +  F    +      +   LP   I         +    F+   
Sbjct: 30  YEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDES 89

Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           +      +   +  G  NA   L  F    +  Y + R       TS LSP+L  G +S 
Sbjct: 90  EKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSV 149

Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P     +P +   +
Sbjct: 150 RKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHP-YSHERPLLGHLK 208

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R++ ASF VK L + WR G
Sbjct: 209 FFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWG 268

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            +YF   LLD DL S+  GWQ+   T  D   + RI NP  +G +FDP G ++R WLPEL
Sbjct: 269 MKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 328

Query: 433 NNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HHTLNQYYA 476
             +PT +IH P +  +        +L  NYPLPIV    A       L++ + 
Sbjct: 329 ARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQ 381


>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
          Length = 559

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 129/257 (50%), Gaps = 13/257 (5%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            I  T+ LSPY+  G +SPR  ++ L   + +L  K      S + +L+WRE + +L+A 
Sbjct: 296 MIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWRE-FYYLVAA 354

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                          +I W KD  L  AW+   TGFP IDAAM QL   GW+H+  R   
Sbjct: 355 GTKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAV 414

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL + W  G + F   L+D D A NNG W W + +      YFR+++P    K
Sbjct: 415 ACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQ-YFRVYSPIAFAK 473

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           ++D  G ++RH+LP L N+P++Y++ P              + ++YP PIVDH  A    
Sbjct: 474 KYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRC 533

Query: 471 LN----QYYAAKKQSLL 483
           ++     Y A K  + +
Sbjct: 534 VDDIATAYAAHKDANAV 550


>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
 gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
          Length = 444

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 104/428 (24%), Positives = 172/428 (40%), Gaps = 21/428 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHFI 61
            + L W  NDLR+ DN  L  AC   D ++I ++     TP      ++  +   +  F+
Sbjct: 4   KIGLYWFTNDLRLHDNPLLIDACAEMD-ELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            ASL ++ +SL++ G      + + +    + +        +T ++ +     +E +  +
Sbjct: 63  EASLNELNQSLAKLGQRLWTVELTPY----QAIKYAISHFGITHIYADAFAGSDEQQALE 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
              K   H  I +    ++L              +          + +   DL       
Sbjct: 119 RAIKGTPHVNIKQQAIRTLLREEQ-----LPFELRQLPATFTKFRKQVEGLDLSQPYESV 173

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
             L    +  N P    Y F               H  R F       Y + R+    ++
Sbjct: 174 HALPPVPSGMNFPTATTYYFDTKPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDGME 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G +SP   +  LK+   +         +    EL+WRE++      Y  
Sbjct: 234 YSTKFSPWLAHGCVSPTIIYAMLKQY--EQKNGANDSTYWIYFELLWREYFYWYARKYQQ 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I     +         + WK+G T FPI++A M QLN  G+M NR R + AS 
Sbjct: 292 KLFRFGGIANQPPLTSFYA-QRFKQWKKGETPFPIVNACMHQLNKTGYMSNRGRQLVASC 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q + +DP
Sbjct: 351 LVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQTYDP 409

Query: 421 QGTFIRHW 428
             +FI  W
Sbjct: 410 DFSFIDKW 417


>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
 gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
          Length = 462

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 167/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  VT ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQSIAHIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210]
          Length = 289

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 7   WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 66

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 67  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 124

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 125 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 184

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 185 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 244

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 245 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289


>gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98]
          Length = 272

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 106/252 (42%), Positives = 140/252 (55%), Gaps = 8/252 (3%)

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD P I  TS+LSPY+  G LS RQ W+    +        ++    +L+EL WREF  
Sbjct: 23  ERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREFGW 81

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +  +P +          + + W  D   L AW++G TG+P +DA MR+L   GWMHNR
Sbjct: 82  TQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNR 140

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFNP 
Sbjct: 141 VRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPV 200

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466
            QG++FDP G ++R W+PEL  +P   IH P              L   YPLPIV H  A
Sbjct: 201 AQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAA 260

Query: 467 CHHTLNQYYAAK 478
               L+ + A +
Sbjct: 261 RRRALDAFGAIR 272


>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
 gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
          Length = 461

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112]
          Length = 288

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 6   WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 65

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+    +        ++    +L+EL WREF    +  +P +          + + W  D
Sbjct: 66  WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 123

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   
Sbjct: 124 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 183

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   
Sbjct: 184 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 243

Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IH P              L   YPLPIV H  A    L+ + A +
Sbjct: 244 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288


>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
 gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
          Length = 461

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14]
          Length = 280

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/277 (40%), Positives = 150/277 (54%), Gaps = 8/277 (2%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+    + 
Sbjct: 6   WRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DA 64

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                  ++    +L+EL WREF    +  +P +          + + W  D   L AW+
Sbjct: 65  YAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWR 123

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D AS
Sbjct: 124 RGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAAS 183

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--- 444
           N   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P    
Sbjct: 184 NAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAP 243

Query: 445 ---SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 244 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280


>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
          Length = 512

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 163/444 (36%), Gaps = 36/444 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIYASL 65
            W R DLR+ D  AL  AC ++   ++ +++  P ++           SAR++ F+  SL
Sbjct: 12  FWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIESL 70

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++ L  +G            D    +   C       +      E  +       + 
Sbjct: 71  VNLRRRLEDRGSGLAV----AIGDPAVVIADLCASASAIYVTQGICSEETQDEARVESKM 126

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    +                      +       +  +   + +       +P++   
Sbjct: 127 KAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAELTKLPSLPGA 186

Query: 186 GPVTPSNIPRFFDY----------PFQAIDPMFPIGEQNA---------LHILRKFCKEK 226
                 +    F               A +   P G                   +  + 
Sbjct: 187 VCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAALTRLQKWIWDDDH 246

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y   R+    +  +S+ SP+L++G LSPR+ W  ++    + +       +  + EL
Sbjct: 247 LREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYEKERVKNK--STYWLVFEL 304

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+F+ ++   +      K  I    K  W   +  L  WK G TG  ++DA M +L  
Sbjct: 305 MWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKNGKTGDLLVDANMLELLA 364

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWM NR R   AS+L+ ++ VDWR G  +F   LLD D  SN G W   A+ G      
Sbjct: 365 TGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSNWGNW--VAAAGLTGQ-R 421

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429
              FN   Q  R+DP   +++HWL
Sbjct: 422 VNKFNTLYQLDRYDPSREYVKHWL 445


>gi|224032111|gb|ACN35131.1| unknown [Zea mays]
          Length = 495

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 146/283 (51%), Gaps = 14/283 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--- 264
           +  G +NA ++L +F    +  Y E         TS LSPYL  G LS R  +  +K   
Sbjct: 52  WSPGWRNAENMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQ 111

Query: 265 -EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            +   +   + +     +L  + +RE+ R+L   YP     + F+   +   W  D    
Sbjct: 112 VKWQNEGKSEAEESVRLFLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRF 170

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK L + W  G +YF   LLD 
Sbjct: 171 KSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDA 230

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT++IH+P
Sbjct: 231 DLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSP 290

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYYAA 477
            +           +L  NYP PIV+   A       ++  +  
Sbjct: 291 WAAPNSILQVAGVELGFNYPKPIVELHMARECLDDAISTMWQL 333


>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 436

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 162/427 (37%), Gaps = 16/427 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           M   L   +NDLR+ DN AL  A    D +++ V+     Q  +     H   A +  F+
Sbjct: 1   MKTGLYLFQNDLRLHDNLALLNATTQCD-RLLLVYCLPYHQANRYPYHIHNYGALRLQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL Q+ + L                  +  L     Q  +  +  + Q    E +  +
Sbjct: 60  LQSLHQLHQQLQDLEQELLVFLEH----PLHILPQLISQYDIHTIISSEQVGYYENQTWQ 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L +R  +  I      +  L     L   L          +  ++++    L       
Sbjct: 116 TLNQR--YPYIEFKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIELTPLTPYISHL 173

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   +I   F    +  D +       +         +   Y   + D+     
Sbjct: 174 PPSPNKIAHISILDSFISHPKPSDFIGGEATAISHLTAYFKSDKASRYKETRNDLDGWDY 233

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +++ SP+L+ G LS ++    L +    +   P   +     EL+WRE+++     +   
Sbjct: 234 STKFSPWLAQGCLSAKRVIYELNQYHHQVDETP--SSQWIKFELLWREYFQWYAHHHQQK 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 I  +            + W +  T +P+++A MRQL T G+M NR R I AS  
Sbjct: 292 IFQFKGIKSSSPHTSFYP-ERFKRWSESNTPYPLVNALMRQLITTGYMSNRGRQIVASCF 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           V +L +DWR G  +F   L+D D+ASN G WQ+ A  G D     R FN   Q + FDPQ
Sbjct: 351 VNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKG-NRHFNLDKQTELFDPQ 409

Query: 422 GTFIRHW 428
           G FI  W
Sbjct: 410 GQFITKW 416


>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 417

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 178/430 (41%), Gaps = 21/430 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGISARQSHFI 61
              L W  NDLR+ DN  L  A    D ++I V++    TP   +   Q  + A +  F+
Sbjct: 3   KTGLYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFV 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SL+++G        +    + + L S   Q  VT L+ NR    +E ++  
Sbjct: 62  DQALQDLNHSLAKQGQRLAVIHQT----AEQTLPSLIEQYNVTHLYVNRCAGWDETKQMH 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+++  +  +     +S+           L       P      +  ++       +P 
Sbjct: 118 TLKQQFPYLKVVSLSVNSLFQESQ------LPFTLAQLPATFTRFRKCMEPVNTRDLLPV 171

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             L     P             +D +                    +Y   +  +     
Sbjct: 172 SELPSTPLPPEERSQPHQADPRVDYLGGETAGQQHCQWYFSHDFASHYKQTRNGLVGKSY 231

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +++ SP+L++G LSP Q    ++    ++        +  + EL+WRE++      + ++
Sbjct: 232 STKFSPWLALGCLSPAQLVAYIQRYEHEIGANE--STYWIVFELLWREYFYWYAMKHGAL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  I  +   +    S     W +G T F I++A M+QL+  G++ NR R + AS L
Sbjct: 290 LFARSGITASTVTKPLDQSKFH-RWTKGETDFAIVNACMKQLHATGYLSNRGRQLAASCL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D  P  R FN   Q + +DP 
Sbjct: 349 IHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNP-SRRFNLDKQTQMYDPH 407

Query: 422 GTFIRHWLPE 431
             FI  WL E
Sbjct: 408 RQFITRWLGE 417


>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
 gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
          Length = 461

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQAAQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
 gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
          Length = 462

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
 gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH
 gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
          Length = 461

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETISLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPHV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581]
 gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma
           conjunctivae]
          Length = 434

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 217/475 (45%), Gaps = 52/475 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQW--RQHGISARQSHFIYASL 65
           +++     D+R+ DN  L      ++ + I +F I   +Q   +    S +   F+  +L
Sbjct: 1   MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + K   +  I   Y +     + IE  +      ++ +++ N+ +    + RDK L++
Sbjct: 61  INLSK---KVNINLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             Q + +I K F+D +L  PG ILN++   YKV+TPF    +  LV+       +P ++ 
Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVE------NLPTVKK 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T               F      F     N++  + +  K  ++ Y + R+  AI     
Sbjct: 167 TLHFYTQIYKNSKSCSFLQEFKYFQTFFPNSIDQILEILKNNIHDYAKNRNNLAIDSNK- 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA--FYPSVC 302
           +SP +  G++S RQ    + +E  ++           + +LIWREFY H        +  
Sbjct: 226 ISPAIRFGIISIRQLLLYVYQETKNIN-------HELIRQLIWREFYYHFNFLASQTNWN 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G P+      +E+N+    L+ WK+G TGFP+IDAA+++L   G+MHNR RM+ ASFL 
Sbjct: 279 FGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L +DW  GE++F   L+D D   N+  WQW A  G D+  + RIFNP +Q K+FD   
Sbjct: 339 KNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFDSNN 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYA 476
            +I  +LP                        NY   PIVD  +  +     +  
Sbjct: 399 YYISKFLP-----------------------TNYQTKPIVDLHETSNKIKKVFQD 430


>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 462

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 168/428 (39%), Gaps = 21/428 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61
           ++ L W  NDLR+ DN  L  A    D  +I ++          +  ++      +  F+
Sbjct: 16  TIGLYWFTNDLRLHDNPLLLRASAEVDL-LICIYCYPKVSSYLKQYAQEPEFGFAKQQFL 74

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL+      Q      +    + +     +  VT L+ +     +E     
Sbjct: 75  DESLHCLNLSLNALNQRLQVVDLHPY----QAIKHAADKLGVTHLYADAVAGSDEQDVVD 130

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++    H  + +S   S+      +      +   +T FRK + +  +   + ++    
Sbjct: 131 NIQAEAPHLAVIQSEVRSLFC-VEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRLP 189

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
               G   P+        P                H  + F       Y + R+    + 
Sbjct: 190 ALPDGLALPTLSLTRDVQPSLFTGGERAG----LEHCRQYFASTLASEYKQTRNGLDGMD 245

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G LSP+  +  LK    +         +    EL+WRE++      Y  
Sbjct: 246 YSTKFSPWLAHGCLSPKTIYAMLKRY--EAANGANDSTYWIYFELLWREYFYWYARRYKR 303

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I     +         Q WK+G T FPI++A M QLN  G+M NR R + AS 
Sbjct: 304 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 362

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV +L ++WR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +DP
Sbjct: 363 LVHELGLEWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDP 421

Query: 421 QGTFIRHW 428
              FI  W
Sbjct: 422 HMEFIDRW 429


>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
 gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
          Length = 461

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q   S
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWS 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETISLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPHV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 311

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/284 (39%), Positives = 146/284 (51%), Gaps = 8/284 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 29  WAGGLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQI 88

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W    +               +L+EL WREF    +  +P +          + + W  D
Sbjct: 89  WQAAVDAHAHRAATQA-DLDKFLSELGWREFCWAQLYRFPDLPRRN-LRHTLDGMPWRDD 146

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   
Sbjct: 147 PAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDT 206

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   
Sbjct: 207 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAA 266

Query: 440 IHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IH                L   YP+P+V H  A    L+ +  A
Sbjct: 267 IHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
 gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
          Length = 436

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 179/425 (42%), Gaps = 21/425 (4%)

Query: 11  LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64
           L WL+NDLR+ DN      A       V  VF+  P  ++            +  F+  S
Sbjct: 6   LYWLKNDLRLNDNPIFSKLALQQCALDV--VFVINPNWFKNTNYQQKQYGENKYTFLMQS 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q++L  +G      +     + +  L     +Q + ++ Y+ Q+ + E R   LL+
Sbjct: 64  LYELQQALIARGQTLHVLE----GEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                           L     +  +   + K +TPF+K +    +   L  +    +  
Sbjct: 120 AHCPQIQ-FTGTLQDTLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTELLPK 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243
              +   N     + P    + M         H  + F  E    Y   R+       T+
Sbjct: 179 PITLCAKNP---IELPKAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNALDGFDNTT 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + SP+L+ G +S +Q +N +++   +         +    EL+WRE+++       S   
Sbjct: 236 KFSPWLAFGCISAKQIYNAVEQY--EQTYTANDSTYWIKFELLWREYFKWHALNVQSSLF 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                  T+ +     +    AW QG T +P+++A M++LN  G++ NR R I AS LV 
Sbjct: 294 SFKGQKQTKPLTTFMPN-RFAAWCQGTTPYPLVNAIMKELNATGFITNRSRQIVASCLVN 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q ++FDP+  
Sbjct: 353 ELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTQQFDPKSI 411

Query: 424 FIRHW 428
           + + W
Sbjct: 412 YTKKW 416


>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
 gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
          Length = 462

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTLLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFAIEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
           cholerae LMA3894-4]
          Length = 462

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAILQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKLGDTPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 311

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/284 (39%), Positives = 147/284 (51%), Gaps = 8/284 (2%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +   +  GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ 
Sbjct: 29  WAGGLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQI 88

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           W+   +               +L+EL WREF    +  +P +          + + W  D
Sbjct: 89  WHAAVDAHAHRAATQA-DLDKFLSELGWREFCWAQLYRFPDLPRRN-LRHTLDGMPWRDD 146

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AW++G TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   
Sbjct: 147 PAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDT 206

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN   WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   
Sbjct: 207 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAA 266

Query: 440 IHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IH                L   YP+P+V H  A    L+ +  A
Sbjct: 267 IHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 457

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 214/479 (44%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLL 123
           +  +SL          + + +  S + + S+C +  ++++          +         
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVVAGDIMSYHLEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  Q  +       +        +N   + YKV+T F K     L   D+    +  + 
Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 P+N+        + +       + +     ++F +  +  Y   R+      TS
Sbjct: 171 DIVIAAPNNL--------KDVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 444

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 93/428 (21%), Positives = 158/428 (36%), Gaps = 12/428 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62
            V L W  +DLRI DN  L  A    D  +I ++ A      P   +   +S R+  F++
Sbjct: 3   KVGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLF 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  L++ G           +   + +  + +                     K 
Sbjct: 62  ESLQDLEAQLNRHGQKLVVRIQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTILRKR 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                  +    +  +   LP       +          +  +   + +       +P  
Sbjct: 122 YGMLTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTPTSLPKP 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQ 240
            L   +        +         +F  G       L  +   +     +  R+    + 
Sbjct: 182 ALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRNGLDGMD 241

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G LS R    +L+    +         +  L EL+WRE+++     Y  
Sbjct: 242 YSTKFSPWLANGSLSTRHIVRQLQ--GYEERAGANDSTYWILFELLWREYFQWYGHKYQQ 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I  +  I         + W  G T + II+A MRQLN  G++ NR R + AS 
Sbjct: 300 RLFTFSGIGNSTPITSFYP-ERFKKWCVGNTPYAIINACMRQLNATGYLSNRGRQLAASC 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            V +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D   + R F+   Q + +DP
Sbjct: 359 FVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPRGH-RHFDLQKQAQIYDP 417

Query: 421 QGTFIRHW 428
              F+  W
Sbjct: 418 DNHFVHRW 425


>gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9]
          Length = 279

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/277 (40%), Positives = 150/277 (54%), Gaps = 8/277 (2%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+    + 
Sbjct: 5   WRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DA 63

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                  ++    +L+EL WREF    +  +P +          + + W  D   L AW+
Sbjct: 64  YAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWR 122

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D AS
Sbjct: 123 RGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAAS 182

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--- 444
           N   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P    
Sbjct: 183 NAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAP 242

Query: 445 ---SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 243 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279


>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
 gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
          Length = 462

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLFPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYTMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
 gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
          Length = 461

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSCVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRRFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPEGEFVAKWC 418


>gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 478

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 167/455 (36%), Gaps = 33/455 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +   T   + ++WL+ DLR+ D++ L+ A   S+ +++ ++   P    +  +S R  HF
Sbjct: 2   LSDNTKPPITIIWLKRDLRLRDHEPLFRAV-ASNERILLLYCWEPSLIEEPHMSVRHWHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-------------- 106
           I  S+  +   L +   V   H  +   D++ ++  +     V                 
Sbjct: 61  IQQSIDDINGQLPEHVNVLTLHMEAV--DALAFISRFYTINAVRSYQEIGLKVTYNRDLR 118

Query: 107 ---FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
                N +       +   + + L HR   K+  +          +     +  +     
Sbjct: 119 VANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAESTYDYDLKRANWVKWNVHVD 178

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
               +L  +++ +L      +             +        M P GE+ A  +L+ F 
Sbjct: 179 IQKASLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQVLKDFF 238

Query: 224 KEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            ++  YY +    P       S+LSPYL+ G +S +Q +  ++ +       P      W
Sbjct: 239 NDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIHEKKRW 298

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---------LQAWKQGYTG 332
              L       H    +      +  I W       ++               W  G TG
Sbjct: 299 SRALSALTSRLHWHCHFIQKFESEHSIEWRPMNSAYENFPYIDGPEAERRFYHWSIGQTG 358

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD +   +    
Sbjct: 359 YPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDFEPGIHYPQI 418

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           Q  AS     +   R++NP  Q K+ DP+G FI+ 
Sbjct: 419 QMQAS--VTGIHTVRLYNPASQSKKLDPEGEFIKK 451


>gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11]
          Length = 457

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/479 (27%), Positives = 216/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F +  +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLEHDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
 gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
          Length = 461

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALRSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   ++   +  +     WK G T  PI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFHFSGIGE-KQPLTSFYAQRFLQWKHGETPVPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRD-SRQFNLAK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
 gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
          Length = 462

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 168/436 (38%), Gaps = 24/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNTLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLNHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVVGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +     +I +    S+L  P                 ++    +L  A +
Sbjct: 112 DERQAIARIHQDFPSVLIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 172 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETR 227

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 404 QAHTYDPKGEFVAKWC 419


>gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 457

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 214/479 (44%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLL 123
           +  +SL+++ +              + + S+C ++ ++++          +         
Sbjct: 58  RFYQSLNKENLTPYVMSY-------DAVISFCEEKNISEVVVAGDIMSYHLEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  Q  +       +        +N   + YKV+T F K     L   D+    +  + 
Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 P+N+        + +       + +     ++F +  +  Y   R+      TS
Sbjct: 171 DIVIAAPNNL--------KDVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLARYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D  SN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46]
          Length = 457

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 31/478 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F +  +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLEHDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
 gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
          Length = 461

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q   S
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWS 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKWFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QTHTYDPKGEFVAKWC 418


>gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
          Length = 457

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 139/480 (28%), Positives = 228/480 (47%), Gaps = 33/480 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    R+ +N        N +      FI   E++ +   +  ++++ Y +L 
Sbjct: 1   MKVGVI-LNRVFRLENNPLFEYISQNKEDIDQCYFIIPQEKFDKE--AEMKANYYYGTLQ 57

Query: 67  QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +   +L    I  F            + L  +C  + ++++            +  +L++
Sbjct: 58  KFVDTLHDYDIQPFLVDY--------DELTHFCKDKGISEVVLAGDIMSYHEEKYDILQQ 109

Query: 126 ---RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                   +   S   +    P    N+  + YKV+T F K     L++  + S  +  I
Sbjct: 110 SASFKNEGISVVSVRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDI 169

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                     +        +     + I E +A +    F  + +  Y   R+      T
Sbjct: 170 AK--------MGVKSQQKVKGDYSQYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLT 221

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLS YL+ GVL   Q +N L E +       +    S++ ELI+REFY  LM +YP   
Sbjct: 222 SQLSIYLAYGVLDIIQIFNDLLENYDK----DEQNYESFIRELIFREFYYVLMTYYPETA 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F      ++W+ +      WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL 
Sbjct: 278 H-QSFKDKYRDLQWSYNKENFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLT 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DW  GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD   
Sbjct: 337 KDLFIDWTWGEEYFRQKLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDA 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ ++  LN++  +Y+H  H +  +      +L  +YP  IV+H ++  H ++++ A 
Sbjct: 397 LYIKKFVQTLNDIDAKYLHDTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKAL 456


>gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 457

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 218/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
          Length = 501

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 104/433 (24%), Positives = 170/433 (39%), Gaps = 30/433 (6%)

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL          +        +       +  V++L +    E     RD ++ K  +  
Sbjct: 2   SLRTLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEA 57

Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +    ++S        I+        +     +A+I  +      +  V   ++     
Sbjct: 58  GVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQMEACRA 117

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    Y   +++            ++P GE  AL  L +  + K +    +R    
Sbjct: 118 EIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAWVANYERPRMN 177

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS +  + RL+E +  +         S   +L+WREF+   
Sbjct: 178 ANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPL-SLFGQLLWREFFYTA 236

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R
Sbjct: 237 ATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 295

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL   W  G + F   LLD D + N G W W + +      +F  + P  
Sbjct: 296 HAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVG 354

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G+R DP G FIR +LP L   P++YI+ P S  +      K  + ++YP PIV+H +A 
Sbjct: 355 FGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPIVNHAEAS 414

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 415 SMNIERMKQTYQQ 427


>gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 433

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 14/249 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R+L   
Sbjct: 26  TSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCFN 85

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I 
Sbjct: 86  FP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 144

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG++
Sbjct: 145 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQK 204

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH--- 468
           +DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A     
Sbjct: 205 YDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLD 264

Query: 469 HTLNQYYAA 477
            +++  +  
Sbjct: 265 DSISTMWQL 273


>gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122]
 gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122]
          Length = 459

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 131/480 (27%), Positives = 215/480 (44%), Gaps = 31/480 (6%)

Query: 7   MSVHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M + + V L    R   N          D      FI   E       S  ++ F   +L
Sbjct: 1   MFMAIAVLLNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +  +SL          + + +  S + + S+C +  ++++          +    +L +
Sbjct: 59  QRFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQ 111

Query: 126 ---RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                + R+       +        +N   + YKV+T F K     L   D+    +  +
Sbjct: 112 RSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNEL 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  P+N+        + +       + +     ++F +  +  Y   R+      T
Sbjct: 172 IDIVIAAPNNL--------KDVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILT 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP   
Sbjct: 224 SQLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESA 279

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL 
Sbjct: 280 H-QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+ 
Sbjct: 339 KNLFINWTWGEDFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKA 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  +   
Sbjct: 399 LYIKTYLPVLNQIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKTL 458


>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
 gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
          Length = 438

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 103/423 (24%), Positives = 166/423 (39%), Gaps = 19/423 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYASLL 66
            + W RNDLR+ D+  L A    +  +++ V++  P Q       G+  ++  FI  SL 
Sbjct: 7   AIYWFRNDLRLHDHPGLVA--AAAADELLLVYLW-PRQRAWCNTQGLGEQRERFICESLT 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ K L   G      Q          +        V  +  ++     E R  ++L +R
Sbjct: 64  ELAKDLQPLGQKLLVLQ----GSPELVIPDLVRDYGVNAIHTSQCAGSYETRALRVLRER 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+    +        + L   L     ++PFR+ + + L  A   S  +P +    
Sbjct: 120 LDIPVLEHGGNSLFQEKDVAALCPELL--DSFSPFRRKVEKQLT-AVEPSRNLPQLPAPP 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQL 245
            V   +IP     P   +             + +      +  Y E R+     +G+S L
Sbjct: 177 AVQFHSIPPARTKPPLGLPLRG-GSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEGSSTL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+LS+G +S R+    + +   +         +    EL+WRE++             +
Sbjct: 236 SPWLSLGSISAREIAAAIAQHEAEQGANE--STYWLYFELLWREYFFWRALRDGVNLF-R 292

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                        +      W  G T  P+++A M QL   GWM NR R I AS L+ D 
Sbjct: 293 HGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIHDF 352

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  ++DP G F 
Sbjct: 353 GIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDPDGVFT 411

Query: 426 RHW 428
             W
Sbjct: 412 HKW 414


>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
 gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
          Length = 433

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 113/422 (26%), Positives = 175/422 (41%), Gaps = 17/422 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQH-GISARQSHFIYASLLQ 67
           HL W RNDLR+ DN A+  A H +   ++ V++   P  W    G+ A++  F+  SL +
Sbjct: 3   HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+++G      +          L     +  +T++         E +    L+++L
Sbjct: 61  LHLQLAEQGQALMVLE----GSPELVLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V  +    + L  P  +      + KV++ FR+A+ +  V+    S  V        
Sbjct: 117 P--VPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQLS 246
                           +      G +     +        Y   E R+      G+S LS
Sbjct: 175 FDAIPPADISKPTMLPLPGGRSAGLRRLRQFVFDDRSITQY--KETRNCLDALDGSSTLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G LS R+  + +     + L       +    EL+WREF+ H  A      M K 
Sbjct: 233 PWLANGNLSVREVAHEVFRFERENLSNE--STYWLFFELLWREFF-HWRAVVDDAQMFKI 289

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                +      D      W  G T FP+++A MRQL   GWM NR R I AS L+ +L 
Sbjct: 290 GGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQIAASCLINELK 349

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR G  +F   L+D D+ SN G WQ+ A  G+D     R FN   Q  ++DPQG F  
Sbjct: 350 VDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRG-GRHFNIDKQAGQWDPQGVFTA 408

Query: 427 HW 428
            W
Sbjct: 409 KW 410


>gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 432

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 185/436 (42%), Gaps = 24/436 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61
           M   LVW RN+LR  DN +L  A   S  +VI ++   P Q++      +     ++ F+
Sbjct: 1   MDTALVWFRNNLRTQDNSSLTHAI-ASGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++K+L+   I                +     Q  V++++  +++   E     
Sbjct: 60  IETVQNLKKNLNDLNITLIVTHEH----PEVTIPDLIDQHDVSEIYSQKEWTREENEVTI 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPV 179
            +E+++ +      +D  +  P  +  N    + +V+T FRK   +   + +   +   +
Sbjct: 116 AVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRLQEKIKTL 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ------NALHILRKFCKEKVYYYVEQ 233
           P+  L    +     +         D                      +  +K+ YY + 
Sbjct: 176 PSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQYYKKT 235

Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+       +S+LS +L+ G +S RQ +  +K+   +  I      +  + ELIWR++++
Sbjct: 236 RNGLVGEDYSSKLSAWLANGSISARQIYWEVKK--FEKEIISNQDTYWLIFELIWRDYFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   + +       I   +  +W ++    + W  G T +  ++A M +L   GWM NR
Sbjct: 294 YVSLKHGNDLFKIGGI-LHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELKETGWMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASF  K+   DWR+G  YF S L+D D+ SN   W + A  GND  P  R FN  
Sbjct: 353 GRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHW 428
            Q + +D  G F+R W
Sbjct: 411 RQQEMYDGNGKFVRLW 426


>gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi]
 gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 190/460 (41%), Gaps = 41/460 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +W RNDLRI DN+ALY A   +  +   ++ ++I    Q +          F        
Sbjct: 34  IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFDKSQSQLPSP------F-------- 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDS----YCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             S+S+    F   + +   +     +     +  +   T +  N     +   +   + 
Sbjct: 80  --SISKIPNSFTLFEQNFEKEIENICNRNNINFIKKWSSTLIHKNDLPYTDLPNQIPKVF 137

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              + ++     +  + +    I     +   +       +     +       +  +  
Sbjct: 138 SAFRKKIEKAIDEKDIEIECYEIEKEDYEELLLSEEEINKIHSQFSKNSNLITKLENVNE 197

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                         +  +             GE  AL   + + + K+  Y   R+    
Sbjct: 198 FMKEYLYPDMEKTQFDNEIKYDQRSVVKFIGGEDKALKRCKFYIENKLKNYSTTRNGNIG 257

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++LSP+L+ G +S R  +  +++   +        A   ++EL+WR+FY++L     
Sbjct: 258 DYSTKLSPWLANGCISSRYIYTEIQKNSNEKSKS---SANILVSELLWRDFYKYLAWKMG 314

Query: 300 SVCMG-------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +           K      E       +   Q W +G TG+P +DA MR+L   G+M+NR
Sbjct: 315 NSFFYEKALQPNKELDYEWEVPLNEYKNERFQQWCKGKTGYPFVDACMRELLNTGFMNNR 374

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            RM+ ASFL+KD+ +DWR+G EYF  QLLD  D  SN G W W+A  G D  P  R FNP
Sbjct: 375 GRMVVASFLIKDMKIDWRMGAEYFERQLLDSTDSCSNYGNWAWSAGIGCDFRP--RYFNP 432

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
             QG   D  G FI+ W+ EL +VP++ IH P+  LD+++
Sbjct: 433 IKQGLDHDKNGEFIKIWIHELASVPSKSIHLPYITLDEDE 472


>gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
 gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
          Length = 432

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/439 (23%), Positives = 185/439 (42%), Gaps = 24/439 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61
           M   LVW RN+LR+ DN +L AA      +V+ V+   P  + +     +     ++ F+
Sbjct: 1   MDTALVWFRNNLRVQDNASLTAAIATGK-RVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++ +L ++ I    +         E + S     +VT L   +++   EV+   
Sbjct: 60  IETIENLKANLDKRNITLLVYNL----KPEEHITSVVKSYKVTSLHSQKEWTAEEVKVTN 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +E+ +        +D  +  P     N   ++ K++T FRK   +      +       
Sbjct: 116 AVERAIPEVSHELVYDQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTAL 175

Query: 182 IRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
            +     T + I                    +  GE  A   L  +        YY + 
Sbjct: 176 PQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQKLAYYKKT 235

Query: 234 RDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+    +  +S+LS +L+ G +S RQ + ++K    ++        +  + ELIWR++++
Sbjct: 236 RNGLIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEVKKNQ--DTYWLIFELIWRDYFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   +         I   ++ +W  ++   + W  G T +  ++A M +L   GWM NR
Sbjct: 294 YVSLKHGDNIFKIGGI-LNKEYDWKHNNKAQREWINGNTKYDFVNANMIELKETGWMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASF  K+   DWR+G  YF S L+D D+ SN G W + A  GND  P  R FN  
Sbjct: 353 GRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHWLPE 431
            Q   +D  G ++R W  E
Sbjct: 411 RQQDMYDGSGKYVRLWTQE 429


>gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 254

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/256 (40%), Positives = 135/256 (52%), Gaps = 9/256 (3%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD P    TS+LSP++  G LS RQ W+   +              ++  EL WRE
Sbjct: 1   YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQA-DLDTFCRELGWRE 59

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F    +  +P +          + + W  D   L AW++G TG+P++DA MR+L   GWM
Sbjct: 60  FCYGQLYRFPDLARRN-LRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFRIF
Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPH------SWLDKNDLSLNYPLPIVD 462
           NP  QGK+FDP G ++R W+PEL  +P    IH P              L   YPLPIV 
Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEPWAAPAARLAAAGVRLGDTYPLPIVA 238

Query: 463 HKKACHHTLNQYYAAK 478
           H  A    L+ +   +
Sbjct: 239 HDAARKRALDAWVTVR 254


>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
 gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
          Length = 461

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  +L  +  SLS  G          +    + L     Q  +T ++ +     
Sbjct: 56  EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKLLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G +     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRG-SRQFNLAK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
 gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
          Length = 447

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/456 (23%), Positives = 171/456 (37%), Gaps = 34/456 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
           MS  L W R DLR+ DN+    AC  +DA ++ V+I  P      +W    I   +   +
Sbjct: 1   MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  + + L Q+G      Q       ++ L +   Q  +  ++        E     
Sbjct: 60  GQALRGLDRQLRQRGSGLCLLQ----GQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115

Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L++ L+   +          + P  +     ++   +TPFRK + Q  V  +       
Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEHPYPAPD 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI- 239
           A+       P                                    V     QR +    
Sbjct: 176 AVPPWPESVPYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQYF 235

Query: 240 ------------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
                               +S+ SP+L++GVLS RQ +     +  +       G +  
Sbjct: 236 ARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQARGANEGTYWL 293

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             EL+WR+++R L   Y         +        +      + WK   TG   IDAAM 
Sbjct: 294 RFELLWRDYFRFLHLKYGRRLYHARGLAPDRPAPTHDA-DRFERWKNADTGHAFIDAAMT 352

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L+  G++ NR+R + AS+L+ DL  DWR G  +F SQL+D D+ SN G W + A  G D
Sbjct: 353 ELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQGNWLYLAGYGTD 412

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
                R FNP  Q + +DP G +   WL     +P 
Sbjct: 413 PRG-SRRFNPDKQAQDYDPGGAYRALWLSGTAAMPA 447


>gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771]
          Length = 208

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 122/205 (59%), Gaps = 7/205 (3%)

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            E+ WREF  HL+  +P +          +  EW  D    +AW++G TG+PI+DA MRQ
Sbjct: 2   KEIAWREFSYHLLYHFPRLASANW-NERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGMRQ 60

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RMI ASFLVKDLL+DWR GE +F   L+D D A+N   WQW A +G D+
Sbjct: 61  LRRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGADA 120

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
            P+FRIFNP +QG+ FDP+G ++  ++PEL  +  +YIH P     +        L   Y
Sbjct: 121 SPFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGHTY 180

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481
           P P+VDH  A +  L  Y A +  S
Sbjct: 181 PAPMVDHGSARNRALAAYDAIRAAS 205


>gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13]
          Length = 220

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/221 (42%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +            +G  +++ EL WR+ + +++  Y      K      +K++WN +  L
Sbjct: 1   MYHIQEKQQTSYSTGMDTFIKELAWRD-FYNMIFHYYPESKTKEIDDKYQKLKWNDNQDL 59

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L  WK+G TGFPI+DA MRQL   GWMHNR+RMI ASFL KD L+DWR+GE YF   L D
Sbjct: 60  LDLWKKGKTGFPIVDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHD 119

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN GGWQWAAS G D+VPYFR+FNP  Q  RFD +G +I+ +LPEL  V  + IH 
Sbjct: 120 YDEASNIGGWQWAASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHE 179

Query: 443 PHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P              +  +YP P+VDH       +  +   
Sbjct: 180 PWKMDDHEQEKAGCVIGKDYPRPVVDHALQRKKAIQMFKEL 220


>gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           FRI909]
          Length = 457

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N        N ++     FI   E++ +      Q +  Y S+ 
Sbjct: 1   MAIGVI-LNRVFRINNNPLFNYIYRNKESINQCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I         F    + L  +C +Q + K+        Y   E       
Sbjct: 58  KFMHELQRYDI-------EPFLMPYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     +  I 
Sbjct: 111 KRFKQADIQVISLRANHYFNPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIT 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   +            I E++  +   +F  + +  Y E R+      TS
Sbjct: 171 KVAVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ G++   Q +N L + +       +    +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYEAFIRELIFREFYYVLMTNYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K
Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P+LN +  +Y+H  H +  +      ++  +YP  ++DHK++    ++++ A 
Sbjct: 398 YIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456


>gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata]
          Length = 450

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 141/271 (52%), Gaps = 11/271 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  G  NA  IL +F ++++  Y +         TS LSPYL  G +S R  +   + + 
Sbjct: 48  WSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQ 107

Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                D   + +  A  +L  +  RE+ R++   +P     +  +       W+ D    
Sbjct: 108 IIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKF 166

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+QG TG+P++DA MR+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD 
Sbjct: 167 KAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDA 226

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ + +  D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P
Sbjct: 227 DLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHP 286

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACH 468
                        +L  NY  PIVD   A  
Sbjct: 287 WDAPLTVLKASGVELGTNYAKPIVDIDTARE 317


>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 477

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 163/454 (35%), Gaps = 41/454 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISA-----RQSHF 60
              L+W  +DLRI DN  L+ A   +N+  +++ ++    E + Q           + +F
Sbjct: 9   PTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIATHRWNF 68

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +   L   G      +     +  E +     +  +  +  +     NE    
Sbjct: 69  LVGSLHALNTELQALGQQLVIAK----GNPTEIISDLLSRYSINTVISSNTVGYNEQAYW 124

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + +  +  H    +    ++          + L      ++      K     L      
Sbjct: 125 QEISNKYPHLAFIQQETFTLFAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYLDAIKSS 184

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----------------LHIL 219
            +  P                F +P  +  P                          H+ 
Sbjct: 185 LIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEASGISHLK 244

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQ-----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           + F      +Y + R+    +          SP+L+ G LS R     L     +     
Sbjct: 245 QYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEEENGAND 304

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
               +  + EL+WRE+++     Y      +  I        +      Q W  G T +P
Sbjct: 305 --STYWIMFELLWREYFQWYARKYGKKLFHRAGI-QQRAPLASFYPQRFQQWCNGSTPWP 361

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           +++A M+QLN  G++ NR R I AS L+ +L +DWR G  YF  QL+D D+A+N G WQ+
Sbjct: 362 LVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAANWGNWQY 421

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            A  G D     R FN   Q + +DP  T+I+ W
Sbjct: 422 IAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454


>gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
 gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
          Length = 437

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 189/443 (42%), Gaps = 25/443 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISA 55
           M         LVW +NDLRI DN  L  A + S+  VIA++      +++          
Sbjct: 1   MPNKQN-KTSLVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEK 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  ++  ++  L    I    + C   ++SIE   +         L+  +++   
Sbjct: 59  FRARFLIETITDLKFQLQALNIPLFVY-CDYTENSIE---NLQNTHGFDALYLQKEWTTE 114

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E     L++K+L   V      +  L  P  +  +   +  V+T FRK L +N++   L 
Sbjct: 115 ENNILDLVKKKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLL 174

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKV 227
               PA         + +P   D  F                            F ++K+
Sbjct: 175 PTANPANSSYTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKL 234

Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +Y + R+       +S+LS +L+ G +S +  + ++KE   + L       +  + ELI
Sbjct: 235 GFYKKTRNGLIGTDYSSKLSAWLANGSISAKTIYWKVKE--FETLHFKNQSTYWLIFELI 292

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR++++++     +       I   +  +W  +   +  W    T  P I+A M +LN  
Sbjct: 293 WRDYFKYVSKKNNNKIFKIGGI-LDKTYQWKDNKDAVNKWINSETNEPFINANMNELNKT 351

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWM NR R   AS+  K+LL+DWRIG  YF S L+D D+ SN G W + +  GND     
Sbjct: 352 GWMSNRGRQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGNDPRN-- 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429
           R FN  +Q +R+D  G +   WL
Sbjct: 410 RKFNIKLQAERYDANGKYQSMWL 432


>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
 gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
          Length = 433

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 183/437 (41%), Gaps = 24/437 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           M   LVWLRNDLR  D  + + AC   + +V+A F   P+      W        ++HF+
Sbjct: 1   MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +Q  L  K I       S    +   +  +  Q + T LF+  ++   E     
Sbjct: 60  LETLRSLQTELENKNISLIVENRS----AATGIPFWLDQLKATALFFQEEWTFEEKMISD 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +  ++ + +   S  D  L  P  +      + KV+T FRK   +        S P   
Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVL 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
            + +       +P   D+ F                ++      + Y++  +R     Q 
Sbjct: 176 NKSSLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSYYKQT 235

Query: 241 --------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                    +S+ SP+L+ G LS R  +  +     ++        +  + EL+WR++++
Sbjct: 236 RNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEVKKNE--STYWLIFELLWRDYFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   + +       I   ++  WN        W +G T  P ++A M +L   G+M NR
Sbjct: 294 YISLKHGNSIFHLGGI-LKKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTGFMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   AS+  K++++DWR+G  YF  QL+D D+ SN G W + A  GND  P  R FN  
Sbjct: 353 GRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHWL 429
           +Q +R+D  G +   WL
Sbjct: 411 LQAERYDSNGKYQNLWL 427


>gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 208

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 125/195 (64%), Gaps = 6/195 (3%)

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + +++         +        I+W  D  +   W++G TG+PIIDAAMRQLN  GWMH
Sbjct: 3   FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 62

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFN
Sbjct: 63  NRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFN 122

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+ 
Sbjct: 123 PIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYA 182

Query: 465 KACHHTLNQYYAAKK 479
            +   TL  Y A+K+
Sbjct: 183 SSKKQTLFLYEASKE 197


>gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 362

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 194/361 (53%), Positives = 244/361 (67%), Gaps = 6/361 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL AAC +  A+VIA+FIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ K I   YHQC +F D++ WLD++C QQ+V  LFYN+QYE+NE RRD+ L  R
Sbjct: 61  LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120

Query: 127 LQHRVICKSFDDSVLL-----PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L      ++            PPGS+L    +MYKV+TPFR+A IQ L+ +D   +P P 
Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            R       S  P  FDYP Q +DP+ FP GE  AL  LR FC+E+V  Y +QRD PA+ 
Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL++GVLSPRQC+NRL+ E    L  P SGAF+WLNELIWREFY HL+  YP 
Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C   PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASF
Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360

Query: 361 L 361
            
Sbjct: 361 F 361


>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 441

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 175/443 (39%), Gaps = 30/443 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----------QWRQHGISA 55
           M+  L W  +DLR+ DN  L       D ++  ++I               Q+ Q  +  
Sbjct: 1   MNNGLYWFEHDLRLADNLPLQQTIAQID-QLHCIYIFNAADFSTTKKKGAGQFNQRHMGQ 59

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  FI  +L  +Q  L   G     +    + + ++ ++    Q   T +  +    + 
Sbjct: 60  HRYRFIRQALDDLQSQLHTFGQQLHIY----YGEPLDIIEQLNTQFNFTHIGKHFHTGVY 115

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQAD 173
           E      L+ +  ++ I  +   ++       ++      ++  +    +   +  +  +
Sbjct: 116 ERNLISALKIQYPNKTIINTNSYTLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPDN 175

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---- 229
              +  P + +     P  +P       + +     +       +  K       Y    
Sbjct: 176 ALPVSFPPVVVAEQNMPDELPAIQVCDKKLLAKNETVQRLIGGELKAKEQMHHYTYGTQA 235

Query: 230 ---YVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+     + +S+LSP+L+ G +SPRQ    + E   +         +    EL
Sbjct: 236 LSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITEY--EAQHGANDSTYWLFFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF++     +      +  I   +      +  + + W  G T +PII+A MRQL  
Sbjct: 294 LWREFFQWQQLKHGKALYHRNGI-QQKSPRGFHNKKVFEDWVNGDTAYPIINACMRQLKY 352

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R + AS  + +L +DW+ G  YF   L+D D ASN G WQ+ A  G+D    
Sbjct: 353 TGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNWQYLAGVGSDPRGC 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
            R FN   Q + +DP G FI +W
Sbjct: 413 -RQFNLNKQTQTYDPHGEFIGYW 434


>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
 gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
          Length = 450

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 170/428 (39%), Gaps = 21/428 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61
           ++ L W  NDLR+ DN  L  A    DA +I V+             ++    + +  F+
Sbjct: 4   TIGLYWFTNDLRMHDNPLLTRASEEVDA-LICVYCYPKLSPFLAHFAQESMFGSAKQQFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL+      Q      +    + +     +  VT L+ +      E     
Sbjct: 63  DESLHCLNLSLNAFDQRLQVVDLHPY----QAIKHAVEKLGVTHLYCDAFSGSEEQDVVD 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + +  +H  IC+    S+      +      +   +T FRK   +  +     ++    
Sbjct: 119 HIRQESEHLTICQQEVRSLFT-VEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTALP 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
           +  +G   P+        P                H  R F       Y + R+    + 
Sbjct: 178 LTPSGLALPTLRLIRDVKPCLFTGGEQAG----LEHARRYFSSTLASEYKQTRNGLDGMD 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++      +  
Sbjct: 234 YSTKFSPWLANGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRHKR 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I     +         Q WK+G T FPI++A M QLN  G+M NR R + AS 
Sbjct: 292 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +DP
Sbjct: 351 LVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDP 409

Query: 421 QGTFIRHW 428
              FI  W
Sbjct: 410 HMEFIDRW 417


>gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
 gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
          Length = 436

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/443 (23%), Positives = 182/443 (41%), Gaps = 26/443 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56
           M+      + +VW RNDLR  D K+L+ AC + +A V+ V+   P  +       +    
Sbjct: 1   MQKKQK--ITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEK 57

Query: 57  -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  S+ Q+  +L    I              E       +  +T +FY  ++   
Sbjct: 58  YRAKFLIESVEQLSDNLQDLNISLHIAHKH----PSEVFKELSERYAITSVFYQTEWTRE 113

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E R +  ++  L +    +++D  +  P          + +VYT FRK   +        
Sbjct: 114 EKRVEAKVKSALPNADFIENYDQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKV 173

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV-- 227
             P P          +  P   D   +  +        F  GE  A   +  +  +    
Sbjct: 174 PAPQPRPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKL 233

Query: 228 YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            YY + R+       +S+ S +L+ G +S    ++ ++    +  +K     +  + ELI
Sbjct: 234 QYYKKTRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELI 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR++++++   + +       +   +  +W  +   L+ W  G T    ++A M ++   
Sbjct: 292 WRDYFKYISLKHGNKIFQIGGVLNKDY-DWGNNKKALRDWINGNTPEDFVNANMIEIKET 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R    S+  K+   DWRIG  YF S L+D D+ SN G W + +  GND  P  
Sbjct: 351 GFMSNRGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRD 408

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429
           R FN   Q  R+D  G + R WL
Sbjct: 409 RKFNIKNQADRYDSGGKYQRTWL 431


>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 439

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 153/421 (36%), Gaps = 15/421 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQ 67
           HL W + DLR+ DN AL    H +   ++ V++           G+  ++  F+  SL  
Sbjct: 9   HLHWFQRDLRLADNPALS--SHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQA 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L++ G      +          L     +  +T++         E    + L++RL
Sbjct: 67  LRDELNRLGQDLLVLE----GSPELVLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL 122

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +          L   L  +       +  ++ L      + PV        
Sbjct: 123 GVPFELHRGNTLFT---EDQLPTGLADFPATFTPFRKQVEPLTITPPAAEPVTLPPPPAA 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +  P           P         +       +  V Y   +  +  + G+S LSP
Sbjct: 180 QFDAIPPAQALPSPALPIPGGRAAGLRRVRQFIFDERRIVSYKETRNCLDGLDGSSSLSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L+ G LS R+  + +     + L       +    EL+WREF+    A      +    
Sbjct: 240 WLANGNLSAREVAHEIFRFEREQLANE--STYWLFFELLWREFF-QWRAVIDDHGLFHIG 296

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                      D      W  G T FP+++A M QL   GWM NR R I AS L+ +L  
Sbjct: 297 GVQKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRGRQIVASCLINELGQ 356

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  + DP+  F   
Sbjct: 357 DWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRHFNLDKQAAQHDPENIFTTK 415

Query: 428 W 428
           W
Sbjct: 416 W 416


>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 450

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 176/435 (40%), Gaps = 25/435 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           MK      + L W  NDLR+ DN  L +A    D ++I ++     TP      ++    
Sbjct: 1   MKKK----IGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+ +SL ++ +SL+  G      + +      + +     +  VT ++ +     
Sbjct: 56  RAKLQFLDSSLSELNQSLNHLGQRLWAVELT----PDQAIKYAVNRFGVTHIYADAFPGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +   H  I +    ++L       + +               + +   D+
Sbjct: 112 DEQQALDRVAEGASHVKIKQQAIRTLLREEQLPFDLSNL-----PTTFTQFRKQVEGLDI 166

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                    L       N+P    Y F A         +   H  + F       Y + R
Sbjct: 167 SRPHESIRSLPPIPLGVNLPSVTAYYFDAKAAFHGGESRGLEHCRQYFASTLASEYKQTR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L+ G +SP+  +  LK    +         +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRYEAENGAND--STYWIYFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               +         I        +  +H  Q WK+G T FPI++A M QLN  G+M NR 
Sbjct: 285 YARRHKRQLFRFGGI-QNRAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHW 428
           Q + +DP   FI  W
Sbjct: 403 QTEMYDPHMEFIDRW 417


>gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group]
          Length = 568

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 169/371 (45%), Gaps = 19/371 (5%)

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I  
Sbjct: 1   MMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINS 60

Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    F+   +      +   +  G QN    L  F    + +Y   R     
Sbjct: 61  GDLSMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADS 120

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L 
Sbjct: 121 ASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLS 180

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R+
Sbjct: 181 FNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 239

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G
Sbjct: 240 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEG 299

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC 467
            +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A 
Sbjct: 300 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANAR 359

Query: 468 -HHTLNQYYAA 477
               L++ +  
Sbjct: 360 LQEALSEMWQL 370


>gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 457

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
 gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
          Length = 436

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 110/443 (24%), Positives = 193/443 (43%), Gaps = 26/443 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55
           M+     +  ++W RN+LR+ DN++L  A  N  +KVIAV+   P+ ++          +
Sbjct: 1   MQKKQE-NTGVIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTAS 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  ++  ++K+L+   I       +  +     + + C +  V  ++  +++   
Sbjct: 59  FRTKFLIETITDLKKNLAALNITLL----TYMESPENKMHTLCDEFSVGTIYTQKEWTRE 114

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E+  D  ++  L   V   +  D  L  P ++     ++  V+T FRK + + +   +  
Sbjct: 115 EIATDNFIKSTLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAV-EKE 173

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKV 227
                        T + IP      F                            F  +KV
Sbjct: 174 CTVTKLSERNLIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKV 233

Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +Y   R+       +++ SP+L+ G LS +  + ++KE   +         +  + ELI
Sbjct: 234 SFYKNTRNGLVGTDYSTKFSPWLANGSLSAKTIYWKIKEYEAEFGSNQ--STYWVIFELI 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR++++++   Y +       I   +  EWN D   +Q W  G T    ++A M +L   
Sbjct: 292 WRDYFKYISLKYNAKVFRIGGI-LEKTYEWNTDQKTVQQWINGETKDAFVNANMIELKET 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   AS+  KDLL+DWRIG  YF S LLD D+ SN G W + A  GND  P  
Sbjct: 351 GFMSNRGRQNVASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRD 408

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429
           R FN  +Q  R+D    + + WL
Sbjct: 409 RKFNTKMQADRYDQNHKYRKLWL 431


>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 443

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 16/429 (3%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHF 60
           M+V  L W  NDLR+ DN  L+ A  + D+ ++ V+   P++ + +          +  F
Sbjct: 1   MAVKALYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPKKQQFNRYQLISVGEIRHRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +Q +L+  G      Q     D +  +     Q  +  ++ +R     E ++ 
Sbjct: 60  LLQALQALQSNLATLGQRLLVMQA----DPMVSMPVLIEQYGINLIYRSRHCGWYEQQQW 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L++   H    +    ++                     ++      V + +      
Sbjct: 116 CYLKQCYPHLRFVEVDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDYL 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAI 239
             +     +     R                    +H+ + F       Y E R+ I   
Sbjct: 176 PPQPNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRNAIEGW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ SP+L+ G +S +    RL++   +   +  S  +    EL+WREF+    A   
Sbjct: 236 NNSTKFSPWLACGAISAKMIMARLQDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAV 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + +      +++  +      + W +G T +PI++A M+QLN  G+M NR R I AS
Sbjct: 293 GRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNQTGYMSNRGRQIVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LV +L VDWR G  YF  QL+D D+A+N G WQ+ A  G DS    R F+   Q + FD
Sbjct: 353 CLVNELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFD 411

Query: 420 PQGTFIRHW 428
           P   FIRHW
Sbjct: 412 PNHHFIRHW 420


>gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
 gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
          Length = 457

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 214/474 (45%), Gaps = 30/474 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    R  +N        N +      +I   E++       R  ++          +
Sbjct: 5   VILNRVFRTNNNPLFEYVYQNMEDIEKCYYIIPKEEFSNEATMKRHYYY---------GT 55

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLLEKRLQ 128
           L +       H    F    + L  +  ++ + ++                    EK  +
Sbjct: 56  LQKFVNTLYDHDIQPFLIDYDELIDFSKEKGINQVVIAGDIMSYHKEEYDILHQKEKFKK 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   +   +    P    N+  + YKV+T F K     L++  + +  +  I   G  
Sbjct: 116 EDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVK 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +   +   +            I E+NA +    F  + +  Y  +R+      TSQLS Y
Sbjct: 176 SKQKVKGNYSQSG--------ISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIY 227

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVL   Q +N L   +       +    +++ ELI+REFY   M  YP       F 
Sbjct: 228 LAYGVLDIIQIFNDLLNSYDK----DEQNYEAFIRELIFREFYYVFMTQYPKTAHH-AFK 282

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + + W+ +      W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +D
Sbjct: 283 EKYQNLNWSYNEENFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFID 342

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +
Sbjct: 343 WTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKF 402

Query: 429 LPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +P LN+V  +Y+H  +    +      +L  +YP  IVDH ++  H ++++ A 
Sbjct: 403 IPILNDVDAKYLHDTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKAL 456


>gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
          Length = 457

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 457

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 220/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++ L    R+  N          +      FI T E       S  ++ F   +L 
Sbjct: 1   MAVAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIITEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    ++ + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDIIHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD  +   TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLSEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L L+YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKAL 456


>gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 457

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKAL 456


>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 443

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 16/429 (3%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHF 60
           M+V  L W  NDLR+ DN  L+ A  + D+ ++ V+   P++ + +          +  F
Sbjct: 1   MAVKGLYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPQKQQFNRYQLVSVGEIRHRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +Q +L+  G      Q     D +  +     Q  +  ++ +R     E ++ 
Sbjct: 60  LLQALQALQSNLATLGQRLLVMQA----DPMLSMPVLIEQYGINLIYRSRHCGWYEQQQW 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + L++   H    +    ++          +          ++      V + L      
Sbjct: 116 RYLKQCYPHLRFVEVDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDYL 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAI 239
             +     +     R                    +H+ + F       Y E R+ I   
Sbjct: 176 PPQPNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRNAIEGW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ SP+L+ G LS +     L +   +   +  S  +    EL+WREF+    A   
Sbjct: 236 DNSTKFSPWLACGALSAKMIMATLLDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAV 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + +      +++  +      + W +G T +PI++A M+QLN  G+M NR R I AS
Sbjct: 293 GRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKTGYMSNRGRQIVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G DS    R F+   Q + FD
Sbjct: 353 CLVNELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFD 411

Query: 420 PQGTFIRHW 428
           P   FIRHW
Sbjct: 412 PNHHFIRHW 420


>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
 gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
          Length = 461

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 170/436 (38%), Gaps = 25/436 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54
           M       + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q    
Sbjct: 1   MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +   +  +L  +  SLS  G          +    + L     Q  +T ++       
Sbjct: 56  EAKKRVLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E +    + +      I +    S+L  P  +      +   +T FRK +    + A +
Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               V    L        +P                 +    H    F       Y E R
Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +           WK G T FPI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + A+ LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVATCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP+G F+  W 
Sbjct: 403 QAHTYDPKGEFVAKWC 418


>gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 585

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 213/502 (42%), Gaps = 44/502 (8%)

Query: 10  HLVWL-RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---QSHFIYASL 65
            +V    +D+RI DN+AL  ACH++   V+ VF+    Q   H   AR   Q   +  +L
Sbjct: 26  AVVLFGTHDIRIHDNEALLLACHHN--HVLPVFLW---QVPVHHWGARGALQVV-LKEAL 79

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+   LSQ+ I      C N  DS+  L     +   + +++NR+        ++    
Sbjct: 80  HQLSLQLSQESINLPLV-CGNTADSVSELCKIASEIGASAVYWNREMTPESREMERHRAT 138

Query: 126 RLQHRVICKSFDDSVLLPPGSILN----HALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+   I      S LL     L          +    PF++A  + L + D   L   +
Sbjct: 139 SLKQLDIAAVACQSALLYDVEKLELDEGFHGGHWGTLMPFKRACEKQLGKPDRPILMKES 198

Query: 182 IRLTGPVTPSNIPR--------------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
           +     V P                         + I   FP+    A   L  F  + +
Sbjct: 199 LACLYSVAPPPQDCKSVPIEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDHFLIKGL 258

Query: 228 YYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   R    ++  TSQLS YL IG++SPR+ + R+++  +    K          EL 
Sbjct: 259 PLYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDSSLSPEAKKTFARRLIWRELA 318

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           + + +        S+         +E +  +++     AWK+G TG+P++DA MR+L T 
Sbjct: 319 YYQLFCFPKMRDRSIRKHY---EASEWVTGDEEKGRFNAWKRGLTGYPLVDAGMRELYTT 375

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G++   +RM+ ASFLV+ L VDW  G E+F   L D D A N+  WQ A  +G D   + 
Sbjct: 376 GYLTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGRSGIDQWNF- 434

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
            + +P    +  DP G + R W+PEL+ +P QY+  P    + +       L   YP  I
Sbjct: 435 -VLSPENASQ--DPYGEYTRKWVPELSPLPLQYLQRPWQTFEGDLRMAGIVLGETYPHRI 491

Query: 461 V-DHKKACHHTLNQYYAAKKQS 481
           V D K     ++    A +++S
Sbjct: 492 VQDLKGERQKSVESVLAMRRRS 513


>gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
 gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
          Length = 434

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 177/444 (39%), Gaps = 24/444 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISA 55
           M   T     LVW RNDLR+ DN+ L+ A   +D +V+ V++  P Q+       H    
Sbjct: 1   MNKDTI----LVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGV 55

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ FI  S+  ++ SL   G               E L +   + +V +++++R+    
Sbjct: 56  IRAKFILESVQDLRLSLRSLGADLLV----VSGYPEEILPTLAERYQVKEVYHHREVAKE 111

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E     L+E+ L  + +         L     L   ++         +  I+        
Sbjct: 112 ETHISTLVEEALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPS 171

Query: 176 SLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
                 I +   +  S IP      F      I    P        + R           
Sbjct: 172 VETPVKIEVPDNLEASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLETLLAGADTA 231

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                   +  + LSP++++G LS    ++ +K+   +    PK  A + +  L+WR+++
Sbjct: 232 SLTGSFGSEEGTVLSPWIAMGCLSVHTVYHAVKKY--EDKSLPKKQAAAIITGLLWRDYF 289

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R +   + +    +                L   WK+G TG P +DAAM QLNTIG++ +
Sbjct: 290 RFMFKKHGNKFFLQQGFSNEIPAYELVGDALFDRWKRGETGDPFVDAAMHQLNTIGFISH 349

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFN 410
             RM+ A +LV +L +   +G  YF  +L+D + ASN G W   A  G+ +     R  +
Sbjct: 350 TARMLVAHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGSSTKDNGIR--D 407

Query: 411 PTIQGKRFDPQGTFIRHW-LPELN 433
                   D QG +++ W  P+L+
Sbjct: 408 IKKLQNLLDAQGEYVKRWGTPQLS 431


>gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 454

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/476 (22%), Positives = 161/476 (33%), Gaps = 60/476 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L 
Sbjct: 1   MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRTECLA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+  G            D    L   C   R+ ++F                   
Sbjct: 57  DLRADLAALGAPLAVR----VGDPQAVLSKLCRLHRIRRIFC------------------ 94

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                        +  P  + L+ ALQ +   T      ++    A     P+PA+    
Sbjct: 95  -------------LEDPAFAELDLALQAWAAGTGLELIRLKPGPGAPAALTPLPAVEP-- 139

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244
              P    R             P G      +L+ F + +   Y + R+        +S+
Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G LS  +    +     +        +       +         A  P     
Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPE 257

Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               P             L+    A   G TG P +DAA+R +   GW+  RLR + AS 
Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            +  L +  +       + L D     +    +  A          R  +P       DP
Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473
            G F R WLPEL  VP + + AP  W   +  L   YP P+VD   A     TL +
Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425


>gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
 gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 226/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N        N ++     FI   E++ +      Q +  Y S+ 
Sbjct: 1   MAIGVI-LNRVFRINNNPLFDYIYRNKESINQCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I         F  S + L  +C +Q + K+        Y   E       
Sbjct: 58  KFMYKLQRYDI-------EPFLMSYDKLIDFCKKQTIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  Q  +   +   +    P    N   + YKV+T F +     L+  D     +  I 
Sbjct: 111 KRFKQADIQVITLRANHYFKPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIT 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   +            I E++  +   +F  + +  Y E R+      TS
Sbjct: 171 KVAVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ G++   Q +N L + +       +    +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYEAFIRELIFREFYYVLMTNYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K
Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P+LN +  +Y+H  H +  +      ++  +YP  ++DHK++    ++++ A 
Sbjct: 398 YIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456


>gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU028]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 224/479 (46%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q +  Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I         F  S + L  +C +Q + K+        Y   E       
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     +  I 
Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   +            I E++  +   +F  + +  Y E R+      TS
Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ G++   Q +N L + +       +    +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++++W  +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K
Sbjct: 279 V-AFKEKYQQLKWFYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    ++++ A 
Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456


>gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A]
 gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           epidermidis RP62A]
 gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           VCU144]
 gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU045]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q +  Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I         F  S + L  +C +Q + K+        Y   E       
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     +  I 
Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   +            I E++  +   +F  + +  Y E R+      TS
Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ G++   Q +N L + +       +    +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K
Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    ++++ A 
Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456


>gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
 gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
          Length = 457

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 339

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 160/342 (46%), Positives = 224/342 (65%), Gaps = 4/342 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D   FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  G
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339


>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
 gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
          Length = 623

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 107/581 (18%), Positives = 183/581 (31%), Gaps = 123/581 (21%)

Query: 7   MSVHLVW--LRNDLRITDNKALYAACH---------NSDAKVIAVFIAT----------- 44
           M+ +++   LRNDLR+ D+  L+                  V+ V++             
Sbjct: 1   MTRNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPR 60

Query: 45  ------------------PEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
                               +         +  FI  S+  ++  L + G          
Sbjct: 61  LEKARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDL----AMF 116

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
                  + S   Q R         Y   E+  +++  ++   R++        +    S
Sbjct: 117 AGTPESVIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKS 176

Query: 147 ILNHAL------------QMYKVYTPFRKALIQNLVQADLRSLPVP-------------- 180
           +++                 ++      +     L   D                     
Sbjct: 177 LIHSRDLGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSA 236

Query: 181 -----------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                                   +     +    + +            +  GE  AL 
Sbjct: 237 NKQHGLDRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALA 296

Query: 218 ILRKFCKEKVYY----YVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
            L  +           Y + R+       +++    L++G+LSPR    +  E       
Sbjct: 297 RLDHYFDRSDSCPAASYKQTRNQMLGTDYSTKFGAALALGLLSPRLIAQKATELDNATHD 356

Query: 273 KPKS-----GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--- 324
              +     G +  + EL+WR+++  +   + S       I                   
Sbjct: 357 ATHNASNKGGGYWIIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAPSKASEWKSS 416

Query: 325 -----------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                       W    TG P+IDA M ++   G+M NR R   ASFL KDL  +WR G 
Sbjct: 417 ASLSDRDDGFVRWCTAQTGVPLIDANMVEMVQTGFMSNRGRQNVASFLTKDLGWNWRHGA 476

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           E+F S L+D +  SN G WQ+ A  GND     R FNP  QG  +D  G ++  WLP L+
Sbjct: 477 EFFESWLVDYEPNSNWGNWQYVAGVGNDPR-SSRQFNPIKQGNDYDANGEYVATWLPLLS 535

Query: 434 NVPTQYIHAPHSWL----DKNDLSLNYPL-PIVDHKKACHH 469
           ++P QY H P +       +   S +YP  PIV+ +    H
Sbjct: 536 DMPPQYRHHPWTCPDAAWAEQAHSAHYPPTPIVEQQMWRKH 576


>gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 457

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
          Length = 460

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/428 (25%), Positives = 171/428 (39%), Gaps = 21/428 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61
           ++ L W  NDLR+ DN  L  A    DA +I V+             ++    + +  F+
Sbjct: 14  TIGLYWFTNDLRMHDNPLLARASEEVDA-LIFVYCYPKLSPFLAHFAQESMFGSAKQQFL 72

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  V  +L+      Q      +      ++  C    VT L+ +      E     
Sbjct: 73  DESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLC----VTHLYCDTFPGSEERDVVD 128

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + + L+H  IC+    S+L     +      +   +T FRK      ++    ++    
Sbjct: 129 HIRQELEHLTICQQEVRSLLT-VEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTALP 187

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240
              +G   P+        P                H  R F       Y + R+    + 
Sbjct: 188 PTPSGLALPTLRLIRDVKPCLFTGGEQAG----LEHARRYFSSTLASEYKQTRNGLDGMD 243

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++      +  
Sbjct: 244 YSTKFSPWLAHGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRHKR 301

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I     +         Q WK+G T FPI++A M QLN  G+M NR R + AS 
Sbjct: 302 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +DP
Sbjct: 361 LVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEIYDP 419

Query: 421 QGTFIRHW 428
              FI  W
Sbjct: 420 HMEFIDRW 427


>gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
 gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
          Length = 394

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 144/377 (38%), Positives = 212/377 (56%), Gaps = 6/377 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L +
Sbjct: 5   PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + +RL
Sbjct: 63  LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   S  D +   PGS+L      ++V++ FRK   + L QA     P P  +   
Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182

Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +    +P     F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTS
Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAM QL   GWMHNRLRM+ A FL K
Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRLRMVVAMFLSK 362

Query: 364 DLLVDWRIGEEYFMSQL 380
           +LL+DWR GE +FM  L
Sbjct: 363 NLLIDWREGERWFMRHL 379


>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
          Length = 427

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 131/284 (46%), Gaps = 14/284 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P GE  AL  L +  + K +    +R            + LSPYL  G LS R  + +L
Sbjct: 51  WPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKL 110

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            + +  +         S   +L+WREF+       P     +   P   +I W+K+   L
Sbjct: 111 TDLYKKVKKNSSPPL-SLYGQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEAL 168

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD
Sbjct: 169 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 228

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D + N G W W + +      +F  + P   G+R DP G +IR +LP L   P +YI+ 
Sbjct: 229 ADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYD 287

Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P +  +      K  + +NYP P+V+H +A    + +     +Q
Sbjct: 288 PWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQ 331


>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
 gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
          Length = 426

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 174/427 (40%), Gaps = 12/427 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYAS 64
            + W RNDLR+ DN AL +A +NSD  ++ V I         +W+       +  F+Y  
Sbjct: 3   SIYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQG 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q +L   G               E ++ + +     +     + +  E    +L  
Sbjct: 62  LEELQLNLKSYGHHLNRFVGKTNLIFQELINRHHINSVYCESINAFEEQAQERLIKELGV 121

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               +          +      + +      K          + +  +      +P +  
Sbjct: 122 NLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKNTIPILDS 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGT 242
              +T      +    F   D  F  GE+ A   + ++ +       +  + ++  I+ +
Sbjct: 182 KTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQYFQSDYPNSYKYSRNNLMGIECS 241

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+LS+G +S  Q ++ LK    +         +    EL+WR+++R L   Y  + 
Sbjct: 242 TKFSPWLSLGFISANQIYSALKRY--EQRNSANDSTYWIYFELLWRDYFRFLFMKYGKIF 299

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K  +  + K  +  +      WK G T    I+A + +LN  G++ NR+R I AS+LV
Sbjct: 300 FYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAGISELNQTGFISNRMRQILASYLV 358

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L  DWR G  +F  QL+D D+ SN G W + A  G D     R FN   Q   +DP G
Sbjct: 359 NELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVGTDPRG-GRHFNVDKQKNTYDPDG 417

Query: 423 TFIRHWL 429
           ++ + W+
Sbjct: 418 SYEKEWI 424


>gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 454

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/476 (22%), Positives = 165/476 (34%), Gaps = 60/476 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L 
Sbjct: 1   MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+  G            D+   L   C   R+ ++                    
Sbjct: 57  DLRADLAALGAPLAVR----VGDAQAVLSKLCKLHRIGRILC------------------ 94

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                        +  P  + L+ ALQ +   T      ++    A     P+PA+    
Sbjct: 95  -------------LEDPAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEP-- 139

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244
              P    R             P G      +L+ F + +   Y + R+        +S+
Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G LS  +    +     +        +       +         A  P    G
Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPGRPG 257

Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               P     +   ++  L+    A   G TG P +DAA+R +   GW+  RLR + AS 
Sbjct: 258 GGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            +  L +  +       + L D     +    +  A          R  +P       DP
Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473
            G F R WLPEL  VP + + AP  W   +  L   YP P+VD   A     TL +
Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425


>gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981]
          Length = 457

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 218/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D +F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIVFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 454

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 160/476 (33%), Gaps = 60/476 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L 
Sbjct: 1   MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+  G            +    L   C   R+ ++                    
Sbjct: 57  DLRADLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILC------------------ 94

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                        +  P  + L+ ALQ +   T      ++    A     P+PA+    
Sbjct: 95  -------------LDDPAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEP-- 139

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244
              P    R             P G      +L+ F + +   Y + R+        +S+
Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G LS  +    +     +        +       +         A  P     
Sbjct: 198 LSPHLATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPE 257

Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               P             L+    A   G TG P +DAA+R +   GW+  RLR + AS 
Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            +  L +  +       + L D     +    +  A          R  +P       DP
Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473
            G F R WLPEL  VP + + AP  W   +  L   YP P+VD   A     TL +
Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425


>gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 583

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 160/354 (45%), Gaps = 19/354 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P  + +   Q + ++ PF    +          LP   I         +    F+   
Sbjct: 18  YDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLSMCPSDDLIFEDES 77

Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           +      +   +  G QNA   L  F    +  Y   R       TS LSPYL  G LS 
Sbjct: 78  ERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSLLSPYLHFGELSV 137

Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           R+ ++ ++ +      +     +     +L  +  RE+ R+L   +P     KP +    
Sbjct: 138 RKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP-CSHEKPLLAHLR 196

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G
Sbjct: 197 FFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWG 256

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLPEL
Sbjct: 257 MKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPEL 316

Query: 433 NNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHTLNQYYAA 477
             +PT++IH P             +L  NYPLPIV+   A       L++ +  
Sbjct: 317 ARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEALSEMWQL 370


>gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315]
 gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 457

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 457

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLK 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 454

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 160/476 (33%), Gaps = 60/476 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L 
Sbjct: 1   MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+  G            +    L   C   R+ ++                    
Sbjct: 57  DLRADLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILC------------------ 94

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                        +  P  + L+ ALQ +   T      ++    A     P+PA+    
Sbjct: 95  -------------LEDPAFAELDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVEP-- 139

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244
              P    R             P G      +L+ F + +   Y + R+        +S+
Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G LS  +    +     +        +       +         A  P     
Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPAAPE 257

Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               P             L+    A   G TG P +DAA+R +   GW+  RLR + AS 
Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            +  L +  +       + L D     +    +  A          R  +P       DP
Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473
            G F R WLPEL  VP + + AP  W   +  L   YP P+VD   A     TL +
Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425


>gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 457

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 NFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 457

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 440

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 102/434 (23%), Positives = 170/434 (39%), Gaps = 26/434 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGIS 54
           MK      V L W   DLRI DN  L+ A    D+ ++ V+             ++  + 
Sbjct: 1   MKQK----VGLYWFTCDLRIQDNPLLWQASCEVDS-LLCVYCLPQMDRYLVRYSQEQSLG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           + +  F+  S+  + +SL   G           D  ++ L+ +     VT  + +    +
Sbjct: 56  SERLAFLQQSVACLSQSLENMGQKLLVFD----DRPLDVLNRFIQDYGVTHFYCDLFSGV 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           NE      L + L   + C     + L     +     ++   +T FRK +    +  D 
Sbjct: 112 NEQSVVDRLSQ-LHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQVEHLPIGVDS 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               +P      P    +     +   Q       +G  +                  + 
Sbjct: 171 SLSALPEP----PAQVISTLNMEEVSCQLFAGGETLGLAHCSGYFATSLASHYKQTRNEL 226

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D      +++ SP+L++G LSP++ +  L+E   +         +    EL+WRE++   
Sbjct: 227 DG--FDFSTKFSPWLAVGCLSPKRIFVLLQEY--EQREGANDSTYWIFFELLWREYFHWY 282

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +         +     +         Q WK G T +PI++A M QL   G+M NR R
Sbjct: 283 GKLWGRRLFKFSGLKDATPLTSFYSYRFQQ-WKHGETQYPIVNACMNQLKATGYMSNRGR 341

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS L+ +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D     R FN   Q
Sbjct: 342 QLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRD-SRRFNLAKQ 400

Query: 415 GKRFDPQGTFIRHW 428
            + +DP   FI  W
Sbjct: 401 TEMYDPDKVFIERW 414


>gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma
           citri]
          Length = 435

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 132/476 (27%), Positives = 202/476 (42%), Gaps = 48/476 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67
           +++     D RI DN  L     N + K+  +FI T EQ + +   S+R    +   L Q
Sbjct: 1   MNIFIFHRDFRIEDNLGLAQ-LANEEKKIYLLFIFTKEQIKANNYFSSRSFQAMVHCLKQ 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K      +   + +  N    I++L       ++ K++ NR Y    + R K + +  
Sbjct: 60  LTKK-----VHVNFLKSENEQTGIKFL--LEQGYKINKIYTNRDYTPFALNRSKAMRQLS 112

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +    I + FDD VLL P +I       Y V+TPF   L ++     + +  V       
Sbjct: 113 KEYNFIYREFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKV------N 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQL 245
           P  P ++                         ++    +    Y + RD+     GT+++
Sbjct: 167 PFLPQHLKDLEILQDITNVKSSDFNLPLEFEKVKTAMFQLNQNYQQTRDLVDLENGTAKI 226

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  GV+S RQC+    E+F             +  +L WR+FY  +           
Sbjct: 227 STALKFGVVSIRQCYLWSIEKFGTFDNA-------FARQLAWRDFYYQVTYNAQLHQQWC 279

Query: 306 PFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               W +KI  N  +     Q W+ G TG+  IDA M++L   G +HNR RM+ ASFLVK
Sbjct: 280 FSENWNKKITINWTNNLEWFQKWQNGETGYDFIDAGMKELKETGLLHNRARMVCASFLVK 339

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DW  GE+YF  QL+D D   N   WQW A TG D+ P+FRIFNP +Q K++DP  +
Sbjct: 340 NLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIFNPELQQKKYDPTSS 399

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +   +   L N PT                      IVD+K +    L  Y    K
Sbjct: 400 YCNKF---LKNRPT-------------------INKIVDYKISVKKALEIYKDCIK 433


>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
          Length = 431

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 88/244 (36%), Positives = 128/244 (52%), Gaps = 10/244 (4%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPYL  G LS R  + RL+E +  +    +    S   +L+WREF+ + +A+    
Sbjct: 144 TTVLSPYLKFGCLSSRLFYQRLQEVYRKVKKHTEPPV-SLEGQLLWREFF-YTVAYGTPK 201

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P  ++I WN D  LL AW+ G TG+P IDA M QL   GWMH+  R   A FL
Sbjct: 202 FDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACFL 261

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G + F   L+D D A NN  W W + +   S  Y RI++P   GK++DP
Sbjct: 262 TRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQ-YHRIYSPISFGKKYDP 320

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R++LP L ++P +YI+ P +         K  +  +YP P+V H  A  +   + 
Sbjct: 321 DGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYPEPLVSHLGASKNCKEKI 380

Query: 475 YAAK 478
            AA 
Sbjct: 381 AAAY 384


>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 449

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 159/430 (36%), Gaps = 21/430 (4%)

Query: 7   MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGISARQS 58
           MS  + L W  NDLR+ DN  L  A    D ++I ++     +P      +Q   S  + 
Sbjct: 1   MSKVIGLYWFTNDLRVHDNPLLSKAAAEVD-QLICLYCYPSVSPYLARYSQQAKWSEPKL 59

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+ ASL  +  SL+             +      +        V+ L+ +     +E  
Sbjct: 60  QFLDASLHCLNLSLNALNQRLLVVDSHPY----HAIKDLVYGLGVSHLYVDAVAGCDEQS 115

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
               L+       + +    ++       L   L          +  ++ LV     S  
Sbjct: 116 IIDSLKAEFDALDVAQKEVRTLFTL--EQLPFELSALPDTFTQFRKQVEPLVVPLPISWV 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                L   ++   I           +     G  +        C  +        D   
Sbjct: 174 KRLPSLPDTLSLPGISLTHHGGSALFEGGEQAGLAHCRRYFSSACPSEYKETRNALDGL- 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              +++ SP+L+ G LS +  +  LK    + L       +    EL+WRE++      Y
Sbjct: 233 -DYSTKFSPWLAHGCLSAKTIYAMLKRY--ERLNGANESTYWIYFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     +         Q WK G T F I++A M QLN  G+M NR R + A
Sbjct: 290 RQKLFRFGGIRNQPPLTSFYAHRFQQ-WKNGQTPFAIVNACMHQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L+ +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +
Sbjct: 349 SCLIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTQMY 407

Query: 419 DPQGTFIRHW 428
           DP   FI  W
Sbjct: 408 DPYQEFIDRW 417


>gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
 gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
          Length = 463

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 192/464 (41%), Gaps = 36/464 (7%)

Query: 1   MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           +    AM  H LVW R +LRI DN AL AA       V  V++    Q      + RQ  
Sbjct: 31  LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AQGSSEIPNPRQDW 86

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F Y +   +  SL+ +G+             +E L +   +  V  +  +  Y  +E+ +
Sbjct: 87  FHYQAAAALHGSLAARGVALYAVNR------VEELPALATRLNVQTVIADEAYTSSEIGQ 140

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + + L  + +  +  +D  +     I+      Y  +  +++A +    Q       
Sbjct: 141 DNRIWRILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQRFGGQDV 200

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                     T   +P F  +  Q        G ++      +  +E + +Y   +D PA
Sbjct: 201 GGGRAEIFQTTSVEMPSFPAWNGQQDMVSAQRGGEDEAGKQWQHFEENIGFYPIMKDFPA 260

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +GTS+LS YLS G +SPR                   GA +WL+ LI R+FY+ L    
Sbjct: 261 RKGTSRLSAYLSAGCISPRVL----------ATEASGQGADAWLDNLIQRDFYQQLAYHR 310

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                     P +          L + W+QG TGFP+IDAAMR L + GW+H  LR +TA
Sbjct: 311 AR------IEPESAAESAPFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLTA 364

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI-FNPTIQGKR 417
            FL   L      G  +F +Q  D D A N G WQ        +    R   +     +R
Sbjct: 365 EFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQ------TAARNAHRRSIDIIQTARR 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            DP GTF+R  +PEL ++P   +H P     + D +  YP P+V
Sbjct: 419 LDPDGTFVRRHIPELAHLPVNLVHTPWLASSEID-AHGYPPPVV 461


>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
          Length = 702

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/520 (19%), Positives = 171/520 (32%), Gaps = 91/520 (17%)

Query: 7   MSVH---LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI------- 53
           MS     +  LR DLR+ DN  L+    A  +    ++ V++ + +Q    G        
Sbjct: 1   MSRSKLLVYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQS 60

Query: 54  ---------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
                             ++ F   ++  +++SL + G        S  D     +    
Sbjct: 61  PYPPAKSQVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELK 120

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY--- 155
                    +  +    E  +++     L  +   +              +  L+     
Sbjct: 121 DAVPCVSSVWMTEEPSWEEVQEQESISSLCSQQGIEFELWKDEKYFVDDRDTGLESPADL 180

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAI------------------------------RLT 185
                  +   + L +   + LP PA                               RL 
Sbjct: 181 PDVFTTYRKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKRLV 240

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGTS 243
            P+                   F  GE +    LR   K       +  R+    +  + 
Sbjct: 241 KPLEHIMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSL 300

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRH 293
           +LS YLS+G L+ RQ    L +       +             G      EL+WR++ R 
Sbjct: 301 KLSAYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRL 360

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ------------------AWKQGYTGFPI 335
             A +                +    +   +                   ++ G TG  I
Sbjct: 361 CTAKFGRKLFRLSGFRQDRSYDKKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGI 420

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+L   G+  NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ 
Sbjct: 421 IDASQRELFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYV 480

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           A TGND     R FNP  Q   +D +GT++R W+PEL  +
Sbjct: 481 AGTGNDPRGDARTFNPVKQAFDYDKEGTYVRMWVPELQGL 520


>gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
 gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
          Length = 457

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 224/479 (46%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q +  Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123
           +    L +  I         F  S + L  +C +Q + K+        Y   E       
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     +  I 
Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTYNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   +            I E++  +   +F  + +  Y E R+      TS
Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ G++   Q +N L + +       +    +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K
Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE +F  +L+D   ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWIWGESFFKQKLIDYYAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    ++++ A 
Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456


>gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 457

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 215/479 (44%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +            +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDQDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++      W +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNETDFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKAL 456


>gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 184

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 6/180 (3%)

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +K  W +D   L+ WKQG TG+PI+DA MR+L+  GWMHNR+RMITASFLVK L
Sbjct: 5   NLRKQFDKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHL 64

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            ++W  GE++F   LLD ++ +N  GWQW A  G D+ PYFRIFNP +QG++FD +G ++
Sbjct: 65  RINWVEGEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYV 124

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+ ELN +P +YIH P    +         L  NY  PIV+H +A +  L  +   K 
Sbjct: 125 KKWVKELNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAFKNLKN 184


>gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
 gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
          Length = 457

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 223/471 (47%), Gaps = 24/471 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    R  +N        N +      +I   E +     +  + ++ Y +L +   +
Sbjct: 5   VILNRVFRTDNNPLFEYVYQNMEDIDQCYYIIPKEDFGNE--AKMKRNYYYGTLQKFVHA 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L +  I        ++D+ +++     + + V        ++       +  + + +   
Sbjct: 63  LYENDIQPFL---MDYDELVDFFKEKGINEVVIAGDIMSYHKEEYDILHQREQFKKEDIS 119

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           +     +    P  +  N+  + YKV+T F K     L++  + +  +  +   G  +  
Sbjct: 120 VTTIRANHYFKPSKT-RNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGVKSKQ 178

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
            +   +            I E+ A +    F  + +  Y   R+      TSQLS YL+ 
Sbjct: 179 KLKGDYSQSG--------ISEETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSIYLAY 230

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           GVL   Q +N L     D   K +    +++ ELI+REFY  LM  YP       F    
Sbjct: 231 GVLDIIQIFNDLL----DGYDKDEQNYEAFIRELIFREFYYVLMTQYPKTAHI-AFKEKY 285

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
           + + W+ +      WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW  
Sbjct: 286 QNLNWSYNEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTW 345

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ ++P 
Sbjct: 346 GEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPT 405

Query: 432 LNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           LN+V  +Y+H  +    +      +L  +YP  +V+H ++  H ++++ A 
Sbjct: 406 LNDVDAKYLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAM 456


>gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 474

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/389 (27%), Positives = 168/389 (43%), Gaps = 16/389 (4%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           LD+      ++ +   +               + +      S     +           Q
Sbjct: 78  LDTLANALSLSHVLMAKDIMSYHRASYDYPHMKKRFEKHHISVIGQRVNHYFQPSKTFNQ 137

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
            ++ Y  F      N             ++         + +      +  D      + 
Sbjct: 138 QHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQYAAKGMNQSDLKFDKHTDEEACARQS 197

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
               +  +            R+       S LS YL+ G+L  R+  N L     +    
Sbjct: 198 WNHFLNHEITLYSQLADDITRNNI-----SGLSRYLAYGLLDIREVINHLL----EGYDS 248

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
            ++   S++ EL++REFY  LM  YP     + F      +EW++     +AWK G TG+
Sbjct: 249 DENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHFEAWKNGETGY 307

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PIIDAAM++L   G+MHNRLRMI + FL K L ++W  GE +F   L+D D ASN  GWQ
Sbjct: 308 PIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDYDNASNVHGWQ 367

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451
           W+ASTG D+VPYFR+FNP  Q +RFD  G FI+  L  L +V  +YIH P  ++      
Sbjct: 368 WSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNPSQYVTAIQQN 427

Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYA 476
               +  +YP  IV+HK++  + + Q+  
Sbjct: 428 HQIKIGEDYPKAIVNHKESRDYVMQQFKQ 456


>gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii]
          Length = 411

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 159/420 (37%), Gaps = 27/420 (6%)

Query: 7   MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS   + W R  LR+ DN AL AA  +    +  +F+  P       I   +  F+  +L
Sbjct: 1   MSHNSIHWFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEAL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +                 E L     + ++T+L +    E     RDK + K
Sbjct: 60  KDLDSSLKKLNSRLFVVSGP----PAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +      S  L     +          T  R   + N + +  + +P P     
Sbjct: 116 LAEENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDM 175

Query: 186 GPVTPSNIPRFFDYPFQAI------------DPMFPIGEQ----NALHILRKFCKEKVYY 229
             V+        +                    +FP GEQ         + +      + 
Sbjct: 176 KGVSTPFFEDHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCKFE 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             +      I  T+ LSPY+  G LS R  W RL + +     +      S   +L+WRE
Sbjct: 236 KPQTSPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVY--RGKQHSEPPVSLHGQLLWRE 293

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P+    +       +++W+ +   L AW++  TGFP IDA M QL   GW+
Sbjct: 294 FFYTTAVGIPNFNRME-GNRHCVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLCQEGWI 352

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++      +FR+
Sbjct: 353 HHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ-FFRV 411


>gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
 gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
          Length = 481

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 197/464 (42%), Gaps = 36/464 (7%)

Query: 1   MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           +    AM  H LVW R +LRI DN AL AA       V  V++    +      + RQ  
Sbjct: 49  LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AKGSSEIRNPRQDW 104

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F Y +   +  SL+ +G+             +E L ++  +  V  +  +  Y  +E+ +
Sbjct: 105 FHYQAAAALHGSLAARGVALYAVNR------VEELPAFAARLNVQTVIADEAYTSSEIGQ 158

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + + L  + +  +  +D  +     I+      Y  +  +++A +    Q       
Sbjct: 159 DNRIWRILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDA 218

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                     T + +P F  +  Q        G ++      +  +E + +Y   +D PA
Sbjct: 219 DCRQTEIFQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQFEENIGFYPIMKDFPA 278

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +GTS+LS YLS G +SPR             +     GA +WL+ LI R+FY+ L    
Sbjct: 279 RKGTSRLSAYLSAGCISPRVL----------AVEAAGQGADAWLDNLIRRDFYQQLAYHR 328

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                     P T+ +       L + W+QG TGFP+IDAAMR L + GW+H  LR +TA
Sbjct: 329 AR------IEPETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLTA 382

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI-FNPTIQGKR 417
            FL   L      G  +F +Q  D D A N G WQ        +    R   +     +R
Sbjct: 383 EFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQ------TAARNARRRSIDIIQTARR 436

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            DP GTF+R  +PEL ++P   +H P     + D +  YP P++
Sbjct: 437 LDPDGTFVRRHIPELAHLPANLVHTPWLASSEID-AHGYPSPVI 479


>gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
          Length = 437

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 20/439 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISA 55
           M+ TT  +  L W R+DLR  D  AL + C   D   + ++I       P  +    +  
Sbjct: 8   MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTL-LYIIDDSWFVPNSYGIQPVGE 66

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            + +F+  ++  + +  S  G      +      + E L S       T          N
Sbjct: 67  HRFNFLIDTIEALNEKASTLGHSILTLR----GQTPELLVSLLSSNAFTHFGVTEHGGYN 122

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E R  + + +   +  I  + + S L     +  +   M  V+TPF++ +   +   +  
Sbjct: 123 ERREVEAVSRFFPNIEI-VTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESAIKPREPM 181

Query: 176 SLPVPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYV 231
           +      R   P   +      +   P    +  F  GE    +      F  +    Y 
Sbjct: 182 ATLTALPRSYTPDIDAECQYTLNRRPPRNQAEGTFVGGEDAVLSHLNSYLFEWKVAASYK 241

Query: 232 EQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+     + +++LSP+L+ G LS R     +K+   +  +      +    EL+WRE+
Sbjct: 242 ETRNALDNWRDSTKLSPWLATGALSARYVIQEVKKY--EQNVVKNDSTYWIYFELLWREY 299

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  L   + S       I        +     +  W  G TG+PI+DA MRQL + G++ 
Sbjct: 300 FYWLQQKFGSKWFQLEGIKSKLPNTSHDPQVFVG-WCNGQTGYPIVDACMRQLASTGYLS 358

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R + AS LV +L  DWR G  +F SQLLD D+ASN G W + A  G D     R FN
Sbjct: 359 NRGRQLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDPRE-NRQFN 417

Query: 411 PTIQGKRFDPQGTFIRHWL 429
              Q + +DP+G F   WL
Sbjct: 418 LQKQTEIYDPKGEFCAKWL 436


>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
 gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
          Length = 400

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 173/419 (41%), Gaps = 29/419 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ D++AL  AC   +  V AVF+    +    G   +Q  F   +L  + 
Sbjct: 3   GVVWYRKDLRVDDHEALTRACEE-EKIVRAVFV----RQTADGRGKQQMTFEEETLQSLN 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L Q GI     Q     +++E L S+   + V                    E   + 
Sbjct: 58  EHLVQLGIELTILQ----GETVEQLTSFIQPEDVVYFH------------RMTGEYEARQ 101

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +   ++ +    ++                A  + +   +        I   G + 
Sbjct: 102 EQEVQKRFNTRMYETQTLHLRDDIGSDELKRVFTAFRKRV---EQDGRFAEPIEAPGNIQ 158

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              +P+            F  GE    + L  + ++ ++ Y E R+   +  +S+LS +L
Sbjct: 159 YIELPQTRGGYDPRTAFPFIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSKLSAWL 218

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G LSPR+    L+    +         +    EL+WR+F+   M            + 
Sbjct: 219 ANGSLSPRRVMAELQRTEQEHGANE--STYWLYFELLWRDFFHLTMRETGHRLFRSNGLK 276

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                 W  D   + +W  G TG P +DA MR++   GWM NR R ITAS+L+ DL  DW
Sbjct: 277 DGRLT-WKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASYLIHDLKQDW 335

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           RIG  YF  QL+D D+ASN G W + A  GN +    R FNP  Q +++DP   FIR W
Sbjct: 336 RIGARYFEQQLIDYDVASNYGNWAYIAGVGN-ATRTPR-FNPEFQQQKYDPNRAFIRRW 392


>gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 455

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 158/473 (33%), Gaps = 57/473 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V LVW RNDLR+TD+ AL  A    D   + + I  P +W     S RQ  F    L 
Sbjct: 1   MNV-LVWFRNDLRVTDHPALARA----DGHALPLVIVDPAEWADPARSGRQWAFRAECLQ 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
                L +              D +  L++ C   R+ ++        + + R       
Sbjct: 56  D----LREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHALDRRVQAWAA 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                                                  +     A     P+P +    
Sbjct: 112 A-------------------------------AGVEFTALAPGPGAPATLTPLPGVEP-- 138

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
              P    R             P G      +L+ F + +  +Y + RD P  A +  S+
Sbjct: 139 --GPIPPARVLRIAEDRCPHRQPGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSR 196

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G L+  +    +     +          ++   L   +  R  +    +    
Sbjct: 197 LSPHLATGTLARVEVREAVTARMEEAGPDWTRSLGAFRAALAQADVARGAVCPPAAPEGA 256

Query: 305 KPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            P      +++    S     +A + G TG P +DAA R L+  GW+  RLR +  S  +
Sbjct: 257 APPEDIFARMKDGIASGAARREALRLGETGLPFVDAAARALSATGWLPARLRGLLVSAAM 316

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L +  R       + L D   A +                  R  +P       DP+G
Sbjct: 317 HHLRLCERTAGVVIAAGLTDHAPAVHWAR--------VRRAARARPVDPLGLAAALDPEG 368

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            F R WLPEL +VP  ++ AP  W   +  L   YP P+VD   A      + 
Sbjct: 369 AFTRRWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATAIREARRRL 421


>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
 gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
          Length = 467

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 155/440 (35%), Gaps = 27/440 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPE-----QWRQHGISARQSHFIY 62
           + W R DLR+ D  AL  A   +    + ++ VF+  P      +W    ++  +  ++ 
Sbjct: 29  IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +++  +   L   G         + D  +  + +      V +     + +         
Sbjct: 89  SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCEEIAAPEEQAVVAALRAA 148

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSL 177
             K            +++   P ++ +                 + L             
Sbjct: 149 GVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQLPPLPSHA 208

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            + AI        ++     +         FP+G        +   +    Y   +    
Sbjct: 209 LLNAIPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHS 268

Query: 238 AI---------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                        +S+ SP+L+ G LS RQ W  ++    +         +    EL+WR
Sbjct: 269 YKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQAFEAEHGANE--STYWLWFELLWR 326

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + +R     +             E    + D      W +G TG P IDA MR+L   G+
Sbjct: 327 DHFR--WLHFKHGNRLYRARGLGEAPVPSHDPDHFARWCRGETGQPFIDAGMRELAATGY 384

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           + NR+R   AS+L+ DL  DWR G  +F SQLLD D+ SN G W + +  G D     R 
Sbjct: 385 LSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPRQ-GRR 443

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           FNP  Q + +D  G++   W
Sbjct: 444 FNPDKQAQDYDADGSYRALW 463


>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 435

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 176/426 (41%), Gaps = 24/426 (5%)

Query: 11  LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYAS 64
           L WL+NDLR+TDN      A       +  VF+  P  ++     Q      +  F+  S
Sbjct: 6   LYWLQNDLRLTDNAIFSDLASQQCALDI--VFVINPHWFKNNNYQQKSYGVHKQQFLMQS 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q++L ++G      +     + +  L +   +Q + ++ Y+ Q+ + E R+  LL+
Sbjct: 64  LYELQQALIERGQTLHVLE----GEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               +     +  D++           L       P      +  V+A    + +  +  
Sbjct: 120 AHCPNVRFTGAQQDTLF------KQSDLPFDLSELPKHFTPFRKKVEAATSPISLSTLPN 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGT 242
                P  +         A + +   G ++A   L ++    +    +  R+       T
Sbjct: 174 GLLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNNT 233

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ S +L+ G +S RQ +  ++    +         +    EL+WRE+++          
Sbjct: 234 TKFSTWLAFGCVSARQVYKAVEAY--EHNQITNESTYWIKFELLWREYFKWHALKAGKSL 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T+ +     +    AW  G T +P+++A M +LN  G++ NR R I AS LV
Sbjct: 292 FSFKGQKQTKPLTTFMPN-RFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQIAASCLV 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q  +FDP  
Sbjct: 351 NELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTLQFDPHA 409

Query: 423 TFIRHW 428
            +   W
Sbjct: 410 VYTNKW 415


>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 438

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 129/277 (46%), Gaps = 10/277 (3%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G Q     ++       +          +  T+ LSPY S+G LS R  + RL + +   
Sbjct: 124 GLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSKIYAQS 183

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                    S   +L+WREF+ + +A            P   +IEW +D+  L  WK   
Sbjct: 184 KNHSLPPV-SLQGQLLWREFF-YTVASATPNFTKMVGNPICLQIEWYEDAEKLHKWKTAQ 241

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N 
Sbjct: 242 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDSDYSINA 301

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           G W W +++      Y RIF P   GKR DP+G +IR +LP L N P++YI+ P +   +
Sbjct: 302 GNWMWLSASAFFHQ-YSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYIYEPWTAPAE 360

Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +   YP P+V+HK+   + L      +++
Sbjct: 361 AQREAGCIIGKEYPFPMVNHKEVSDNNLQLMKQVREE 397


>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 436

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 102/434 (23%), Positives = 170/434 (39%), Gaps = 24/434 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55
           MK        L WL+NDLRI DN  L           I VF+  P  ++     Q     
Sbjct: 1   MKKRI-----LYWLQNDLRIDDNPILNDLSQQQCELDI-VFVINPAWFKSNNYQQKPYGV 54

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  SL ++Q+S+   G      +     D +  L     +  + ++ Y+ Q  + 
Sbjct: 55  HKQRFLMQSLYELQESVLGLGQTLHILE----GDPVRVLTQRINELGIDEVVYSEQIGVY 110

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E R+   L+ +    V+ KS     L     +      +   +TPFRK +    +     
Sbjct: 111 EQRQITALKSKC-ATVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGISLSSV 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +     +               +      G  +    L+ F       Y   R+
Sbjct: 170 PFSAKRLPPPIILCAKQPISEPPTGNPLLQGGHKAGLAH---CLQYFSSALPSSYKITRN 226

Query: 236 I-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  +++ S +L+ G +S +Q +  +     +         +    EL+WRE+++  
Sbjct: 227 ELGGFDNSTKFSSWLAFGCISAKQIFCAVDAY--EAQHGENESTYWIKFELLWREYFKWH 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                           +  +      +    W QG T FP+++A M++LN  G++ NR R
Sbjct: 285 AINVKHQLFTFKGKKQSSPL-TTFSPNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSR 343

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            I AS LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q
Sbjct: 344 QIAASCLVNELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQ 402

Query: 415 GKRFDPQGTFIRHW 428
            +++DP G +I  W
Sbjct: 403 TQQYDPHGEYIAKW 416


>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           EB0_41B09]
          Length = 424

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 187/434 (43%), Gaps = 26/434 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64
            + W RNDLR+ DN +L  A  +SD +++ V++         +W    +   +  ++   
Sbjct: 3   SIYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQG 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q+ LS  G    Y+     DD+++ L     +  + +++        E+ ++    
Sbjct: 62  LNALQEKLSNYGHSLNYY----LDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIR-- 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               H+V   S+  S L     I  +   +  V+T FRK +    V+    SL    I  
Sbjct: 116 -LRGHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINA 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL--------HILRKFCKEKVYYYVEQRDI 236
              +                   FPI E             +   F   K   Y + R+ 
Sbjct: 175 IKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRNE 234

Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              I  +++ SP+L+ G +S RQ ++ L     +L +      +    EL+WRE++R + 
Sbjct: 235 LMGIDFSTKFSPWLASGYISARQVYDFLLSY--ELNVIKNESTYWIFFELLWREYFRLIF 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y      +  +  +++ + +      + WK+G T    I+A M++L   G++ NR+R 
Sbjct: 293 KKYGKKIFHRYGLGLSDE-KVSHSDENFELWKEGRTASNFINAGMKELKETGFLSNRMRQ 351

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+LV +L  DWR G  +F SQL+D D++SN+  W + A  G D     R FN   Q 
Sbjct: 352 IVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQKQK 410

Query: 416 KRFDPQGTFIRHWL 429
             +DP G++ + W 
Sbjct: 411 STYDPYGSYEKLWC 424


>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus
           leucogenys]
          Length = 543

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 161/425 (37%), Gaps = 25/425 (5%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           RI     L AA   +   V  V+I  P       +   +  F+  SL  +  SL +    
Sbjct: 56  RIHKQPTLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 114

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQHRVICKSFD 137
               +        +       +  VT+L +    E     RD  +++   +  V   + +
Sbjct: 115 LFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTEN 170

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
              L     I+    Q   +     +A+I  +         V + ++             
Sbjct: 171 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDE 230

Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242
            Y   +++            ++  GE  AL  L K  + K +    +R   +        
Sbjct: 231 TYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMSANSLLASP 290

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       P   
Sbjct: 291 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRFD 349

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL 
Sbjct: 350 RME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 408

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP 
Sbjct: 409 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPS 467

Query: 422 GTFIR 426
           G +IR
Sbjct: 468 GDYIR 472


>gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii]
          Length = 488

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P GE  AL  + +  + K +    +R            + LSPYL  G LS R  + +L
Sbjct: 62  WPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKL 121

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            + +  +         S   +L+WREF+       P     +   P   +I W+K+   L
Sbjct: 122 TDLYRKVKKTNTPPL-SLYGQLLWREFFYTAATSNPRFDKME-GNPICVRIPWDKNPEAL 179

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +  TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD
Sbjct: 180 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 239

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D + N G W W + +      +F  + P   G+R DP G FIR +LP L   P +YI+ 
Sbjct: 240 ADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYD 298

Query: 443 PHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P +         K  + ++YP P+V+H +A    + +     +Q
Sbjct: 299 PWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIYQQ 342


>gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
 gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
          Length = 457

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 215/479 (44%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N          +      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           +  +SL          + + +  S + + S+C +  ++++          +    +L + 
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++           D  F   +    +  + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +          +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+V YFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 141

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 1   RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 61  DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 121 VEHKQARIATLSAYEAARKGA 141


>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
 gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
          Length = 431

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 176/423 (41%), Gaps = 20/423 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQW-RQHGISARQSHFIYASLLQV 68
           L+WL+NDLR+ DN     A   S+  ++ V+    P  W    G+ A+++ F+  +L  +
Sbjct: 4   LLWLQNDLRLADNAGFQLASQASE--LLIVYCWPKPRPWCNLTGLGAQRTRFLSETLEHL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  LS+ G         +     + L     +  +  L  +R    NE    K L+  L 
Sbjct: 62  RHQLSELGQDVFV----SVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDALD 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                     + L     +      + K +TPFRK +    +   L     P        
Sbjct: 118 --CNVSVTRGNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLA---TPKQLPPKIT 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-QGTSQL 245
                P   +         +  GEQ AL  ++ +  ++     Y + R+        S L
Sbjct: 173 EVRYGPTPSNNTRPHPTFPYRGGEQEALRRIKHWVFDRQAIATYKQTRNALDGLDNYSAL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L+ G +SPR   + ++    ++        +    EL+WREF+              
Sbjct: 233 SPWLATGAVSPRTILHHVQRFENEVTANE--STYWVFFELLWREFFYWRAQIDGVHLFLP 290

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +   +++           W +G T +P+++A M QL   G+M NR R I AS L+ DL
Sbjct: 291 YGVARKKQLRTFDPRQFT-RWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAASSLIHDL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            VDWR G  +F   L+D D+ASN G WQ+ A  G+D     R FN   Q +++DP+G FI
Sbjct: 350 GVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRG-GRHFNIDKQTEQYDPKGLFI 408

Query: 426 RHW 428
             W
Sbjct: 409 TQW 411


>gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group]
          Length = 681

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  G QNA   L  F    +  Y   R       TS LSPYL  G LS R+ +++++ + 
Sbjct: 222 WSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQ 281

Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                +           +L  +  RE+ R+L   +P   + KP +       W  D    
Sbjct: 282 LMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYF 340

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           + W+QG TG+P++DA MR     GW+H+R+R++ +SF VK L + WR G +YF   LLDG
Sbjct: 341 KVWRQGRTGYPLVDAGMRDSRATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDG 400

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL S+  GWQ+ + +  D     RI NP ++G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 401 DLESDRLGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHP 460

Query: 444 HSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477
               +        +L  NYPLPIV+   A       L++ +  
Sbjct: 461 WDAPESVLQAAGIELGSNYPLPIVELDAAKTRLQDALSEMWEL 503


>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
 gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
          Length = 703

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 97/511 (18%), Positives = 169/511 (33%), Gaps = 78/511 (15%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI---- 53
           M ++T   + +  LR+DLR++DN  L+    + D     ++ V++    Q    G     
Sbjct: 1   MPSSTN--ILIYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDG 58

Query: 54  ------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
                                ++ FI  S+  +Q+S    G           D     L 
Sbjct: 59  SKSPYPEARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLK 118

Query: 96  SYCLQQ---RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
               +Q       +      E     +         +       D+   +          
Sbjct: 119 GLTEKQQTIGAVWMTLEDAVEEKRDEKAVSSICSENNIEFKLWQDEKYFVDDRDTELENA 178

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--------- 203
                     +   + L +    +LP P+     P    ++    + PF+          
Sbjct: 179 HDLPDIFTTYRKTQEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELEA 238

Query: 204 ----------------------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQ 240
                                 + P+          +        +  Y   R+    + 
Sbjct: 239 ALLKPVEDVLDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNGLLGVD 298

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREF 290
            +++LS YL++G L+ RQ    + +       +             G  +   EL+WR++
Sbjct: 299 FSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRDY 358

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLN 344
            R     +              K    K +         + +  G TG   IDA+ R+L 
Sbjct: 359 MRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAEILKRFLAGTTGMGFIDASQRELL 418

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+  NR R   ASFL K L +DWR G E++   L+D D++SN   WQ+ A  GND   
Sbjct: 419 HTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGNDPRG 478

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
             RIFNP  Q   +D QG +++ W+PE   +
Sbjct: 479 EARIFNPVKQAFDYDKQGEYVKAWVPETRQL 509


>gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 719

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 145/400 (36%), Gaps = 26/400 (6%)

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
           + D ++ L  +  +   + L           RRD   +      +   S D  +     S
Sbjct: 189 YGDPVDILSHFVDR-GWSILTMETPTSRYGKRRDTRAQSVCGDALRFISGDGLIRDAEWS 247

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
             N    + +              +           +LT P   +       +       
Sbjct: 248 RANWKSHITEWLA----------AEQHTPEWSGDTTQLTIPTGITPSVVEKTHKINPTKK 297

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLK 264
           M P G   A     +   +++  Y      P    T    LSPY + G+LS RQ    + 
Sbjct: 298 MVPTGTHRAATTQLRAFVDQIGSYPSNISAPQDARTGTSGLSPYFNFGLLSIRQVHQYVN 357

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
               +       G   + + LIW   Y   +A +           + E      +  L+ 
Sbjct: 358 NNTPE-----CRGRRMFTSRLIWNCHYNQKLADWAGWTDRAVNPAFEEFNADRHNPALVD 412

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AWK G TGFP++DA+MR L   GW++ R+R +  S     L   W IG ++F   L+D D
Sbjct: 413 AWKHGQTGFPMVDASMRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLIDSD 472

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
           +  N   WQ  +  G    P  R++NP  Q +  D  G +I  W+PEL+++P Q+   P 
Sbjct: 473 VGINYTQWQ--SQAGLIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPRPE 530

Query: 445 SWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                        +  +YP P+VD         ++Y   +
Sbjct: 531 RTPLAVQSECNVIIGDDYPRPVVDFDARRETFWSRYERRR 570


>gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 367

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 202/369 (54%), Gaps = 6/369 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +     L   PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F  P +A+  ++P GE  A   +  F  E++ YY ++RD P   GTSQ
Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGE 373
           LL+DWR GE
Sbjct: 359 LLIDWREGE 367


>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
 gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
          Length = 447

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/435 (23%), Positives = 170/435 (39%), Gaps = 23/435 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQH-GISARQSHFIY 62
            V L W  +DLR+ DN A          K+I ++ A        W+Q   +S R+  F++
Sbjct: 3   KVGLFWFNHDLRMDDNAA-LVLAAAEVDKLICLYCADTTNTGPGWQQPAKLSPRRREFLF 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  LSQ G              +E +        V+ L+        E R    
Sbjct: 62  ESLQDLETQLSQYGQKLVVR----IQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNT 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-------VYTPFRKALIQNLVQADLR 175
           L KR       +S   ++  P                    +      ++I   + A  +
Sbjct: 118 LRKRYPMLEFNQSHTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPEK 177

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQR 234
             P  ++               +        +F  G       L+ +  +     Y + R
Sbjct: 178 LPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQTR 237

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L+ G LSPR+   +L+E   +         +    EL+WRE+++ 
Sbjct: 238 NGLDGMDYSTKFSPWLANGTLSPRRIVQQLQEY--EARAGANDSTYWIFFELLWREYFQW 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               +         I  +            + W  G T + II+A M+QLNT G++ NR 
Sbjct: 296 YGHRHQQQLYAFTGIAQSAPTTSFYP-ERFKKWCAGNTPYAIINACMKQLNTTGYLSNRG 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS  V +L +DWR G  Y   QL+D D+ASN G WQ+ A  G D   + R F+   
Sbjct: 355 RQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGHRR-FDLKK 413

Query: 414 QGKRFDPQGTFIRHW 428
           Q + +DP+  F++ W
Sbjct: 414 QAQIYDPKNQFVQRW 428


>gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa]
 gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/445 (23%), Positives = 177/445 (39%), Gaps = 47/445 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL  A    D  V  VFI  P++  Q         ++  S  Q
Sbjct: 4   SKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSFAQ 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL                  ++ +++       T + +N  Y+   + RD  ++++L
Sbjct: 61  LGQSLE---------ISCTVGALLDSIETI----GATTVAFNHLYDPVSLVRDHNIKEKL 107

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I     +  L   P  I +     +  +  +R       ++      P   +   G
Sbjct: 108 VELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVPAAG 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   ++                +G   +               +          +S LS
Sbjct: 168 TIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLR-----VGSFSSLLS 222

Query: 247 PYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYL  G LS R+ +  ++ +      +     K     +L  +  RE  R+L   +P   
Sbjct: 223 PYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYLCFNFP-FT 281

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +   +   WN +    +AW+QG TG+P++D  MR+L  IGW+HNR+R I +SF V
Sbjct: 282 HERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIRAIVSSFAV 341

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ WR G              ++  GWQ+ + +  D+    R+ NP IQG +FDP+G
Sbjct: 342 KVLLLPWRWG-------------LNDILGWQYISGSLPDAHELERLDNPEIQGSKFDPEG 388

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL 447
            +       L  +PT++IH P    
Sbjct: 389 EY-------LTRMPTEWIHHPGDAP 406


>gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 474

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/389 (27%), Positives = 168/389 (43%), Gaps = 16/389 (4%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           LD+      ++ +   +               + +      S     +           Q
Sbjct: 78  LDTLANALSLSHVLMAKDIMSYHRASYDYPHMKKRFEKHHISVIGQRVNHYFQPSKTFNQ 137

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
            ++ Y  F      N             ++         + +      +  D      + 
Sbjct: 138 QHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQYAAKGMNQSDLKFDKHTDEEAYARQS 197

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
               +  +            R+       S LS YL+ G+L  R+  N L     +    
Sbjct: 198 WNHFLNHEITLYSQLADDITRNNI-----SGLSRYLAYGLLDIREVINHLL----EGYDS 248

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
            ++   S++ EL++REFY  LM  YP     + F      +EW++     +AWK G TG+
Sbjct: 249 DENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHFEAWKNGETGY 307

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PIIDAAM++L   G+MHNRLRMI + FL K L ++W  GE +F   L+D D ASN  GWQ
Sbjct: 308 PIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDYDNASNVHGWQ 367

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451
           W+ASTG D+VPYFR+FNP  Q +RFD  G FI+  L  L +V  +YIH P  ++      
Sbjct: 368 WSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNPSQYVTAIQQN 427

Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYA 476
               +  +YP  I++HK++  + + Q+  
Sbjct: 428 HQIKIGEDYPKAIINHKESRDYVMQQFKQ 456


>gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
 gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
          Length = 280

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 129/247 (52%), Gaps = 21/247 (8%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS LSP+L  G +SPR+    L ++ V    +  + A  +  EL+WRE
Sbjct: 46  YEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-DKVVRSTPRLVAPAEKFRKELVWRE 104

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            + + +         + F        W       +AW +G TG+P++DA M+QL   G+M
Sbjct: 105 -FNYNILDLQPELHTRNFRDDFSTFPWQSSDKDFRAWARGETGYPLVDAGMKQLWQTGFM 163

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFLVK LL+DWR GE++F   LLD D ASN G WQW A  G D+ PYFR+F
Sbjct: 164 HNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADPASNPGNWQWVAGCGADAAPYFRVF 223

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP  Q  +FDP   + R +                   DK   ++ YP PIVDH  A   
Sbjct: 224 NPITQADKFDPDDIYRRKF-------------------DKPRGTVPYPRPIVDHAFARER 264

Query: 470 TLNQYYA 476
            L+ Y +
Sbjct: 265 ALDAYRS 271


>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
          Length = 461

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 10/246 (4%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL + +  +         S   +L+WREF+       P  
Sbjct: 135 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 193

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 194 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 252

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G   F   LLD D + N G W W +  G     +F  + P   G+R DP
Sbjct: 253 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLS-CGAFFQQFFHCYCPVGFGRRTDP 311

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + + 
Sbjct: 312 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 371

Query: 475 YAAKKQ 480
               +Q
Sbjct: 372 KQIYQQ 377


>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 446

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 166/434 (38%), Gaps = 23/434 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGIS 54
           MK      + L W  N+LRI DN  L      + +++I ++             ++    
Sbjct: 1   MKNK----IGLYWFTNELRIHDNPLLAE-VDKAVSELICIYCYPKLPPFLTHFAQEAQFG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  SL  +  SL+ +    Q      +    + +     +  VT L+ +    +
Sbjct: 56  QNKLRFLDESLHCLNLSLNARNQRLQVVDLLPY----QAIKHAIEKLDVTHLYCDAFSGV 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E      +     H  IC+    S+       L  +L+         + L++ L  +  
Sbjct: 112 DEQDVIDKIRSDFPHLTICQREVRSLFALDD--LPFSLENLPGTFTKFRKLVEKLPVSKP 169

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            +       +   +    +    D      +     G ++                    
Sbjct: 170 VATVSSLPPIPEGLALPTLRLIGDGKSYLFNGGEQAGLEHCQQYFSSISASDYKQTRNGL 229

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D   ++ +++ SP+L+ G LSP+     L     + +       +    EL+WRE++   
Sbjct: 230 DG--MEYSTKFSPWLAHGCLSPKVICAMLSRY--EHVNGANDSTYWIYFELLWREYFYWY 285

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              Y         I     +         Q WKQG T FPI++A M QLN  G+M NR R
Sbjct: 286 ARKYKHQLFRFGGIRNQVPLTSFYGHRFQQ-WKQGETPFPIVNACMHQLNETGYMSNRGR 344

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q
Sbjct: 345 QLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGA-RQFNLKKQ 403

Query: 415 GKRFDPQGTFIRHW 428
            + +DP   FI  W
Sbjct: 404 TEIYDPNMAFINRW 417


>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
 gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
          Length = 445

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/435 (25%), Positives = 171/435 (39%), Gaps = 25/435 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54
           MK      + L W   DLR+ DN  L  A    D +++ ++     TP      ++  + 
Sbjct: 1   MKKK----IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  FI ASL ++  +L Q G          +    + L        VT L+ +     
Sbjct: 56  RARQKFIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLGVTHLYADAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E      L+    H VI +    S+     S L   L          +  ++ +   D+
Sbjct: 112 DEQSILHKLQDEYPHLVIVQHAVRSLFDE--SKLPFTLPDLPETFTQFRKCVEGI---DI 166

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                   RL      + +P    + F               H  R F       Y E R
Sbjct: 167 AHPIDAPSRLPPTPKDAQLPTLSSFYFDESALFSGGEWSGLAHCRRYFSSGLASSYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SPR  +  LK+   +         +    EL+WRE++  
Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y         I     +         Q WK G T +PI++A M QL+  G+M NR 
Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYPIVNACMHQLDHTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHW 428
           Q + +DP   FI  W
Sbjct: 403 QTQMYDPNHEFIVRW 417


>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 433

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 173/423 (40%), Gaps = 18/423 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASLL 66
           +W   D R+ DN AL  A    +   + VF+         +++   +   +  F+  SL 
Sbjct: 1   MWFTQDQRLDDNPALRLAAEADEM--LCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + L   G          +  +   +     +  + ++   R    +E+R+ + LE +
Sbjct: 59  ELNQRLQLHGQRLLV----VYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                 C++   ++       +    + + +     + L +  V   + ++P     +T 
Sbjct: 115 FPETEWCQADAATLFE--DDQVAGLSRSWPMSFSAFRRLAERWVVPAVTAMPQLPNTITQ 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQL 245
            ++   +P +      +         +   H+      +    Y   R+ I     +S++
Sbjct: 173 QISQLTLPDWLPNARASHSMFDGGESEALRHLDCYLASDYPQTYKRDRNAIDDWDSSSKM 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L+ G LS R+   +L E           G      EL+WRE+++ L     +     
Sbjct: 233 SPWLNAGNLSARRLKQKLDEYDQQHGASD--GTHWLFVELLWREYFQWLAQSIGTKLFHF 290

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +   + +         + W++G T + I++A MRQL   G++ NR R I AS LV +L
Sbjct: 291 QGLSEHKPLTSFYS-DRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQIAASALVNEL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR G  +F   L+D D+ASN G WQ+ A  G DS    R FN   Q + FD  G+F 
Sbjct: 350 ALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTELFDADGSFR 408

Query: 426 RHW 428
             W
Sbjct: 409 ARW 411


>gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
           Precursor
 gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
          Length = 745

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 169/539 (31%), Gaps = 96/539 (17%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------- 53
            V +  +R +LR++DN   +        +  + ++ V++   +Q    G           
Sbjct: 5   KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64

Query: 54  ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYC 98
                          ++ F+  S+  ++ SL   G                 +E L +  
Sbjct: 65  APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
            Q     +  +   E     +                 D+  L+         L      
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDV 184

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----------------- 201
               +  I+ L +   ++LPVP           ++      PF                 
Sbjct: 185 FTTYRKQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPV 244

Query: 202 --------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLS 246
                         ++  P           I        +  Y + R+       +++LS
Sbjct: 245 KNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLS 304

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMA 296
            YL+ G ++ RQ  + L         K             G  +   EL+WR++ R    
Sbjct: 305 AYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQ 364

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQA------------------------WKQGYTG 332
            Y                   +D                              +  G TG
Sbjct: 365 KYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTG 424

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
             +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++SN   W
Sbjct: 425 MGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANW 484

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450
           Q+ A  GND     RIFNP  Q   +D  GT++R W+PE+      + +    +   ++
Sbjct: 485 QYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTASKED 543


>gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
 gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
          Length = 450

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 157/448 (35%), Gaps = 35/448 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R+ LR+ DN AL         +   VFI   E          +  F++  L+ + +
Sbjct: 7   IHWFRHGLRLHDNPALLEGMTLGK-EFYPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G            D         L+  V  L +    E     RD+ ++   +  
Sbjct: 66  QLKAAGGRLFVFH----GDPCLIFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCKEM 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            + C       L  P  I+        +        +  +             ++   + 
Sbjct: 122 KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTEIGHPPRPMPDPILTKVNMKIP 181

Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKV------YYYVEQ 233
                R                +    ++  GE  AL + R     +       Y    Q
Sbjct: 182 SDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCLPNQ 241

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---------GAFSWLNE 284
                +     LS YL  G LS R+ + ++ + + ++                      +
Sbjct: 242 YMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHLTAQ 301

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +IWRE++  +          K   P    IEW +D   L+AW  G TG+P IDA M+QL 
Sbjct: 302 VIWREYFYTMSVGNIHFNKMKE-NPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQLK 360

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND-S 402
             GW+H   R  TA FL + DL + W  G + F   LLD D +   G W W +S+  +  
Sbjct: 361 YEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFEKF 420

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +     F P   G+R DP G ++R ++P
Sbjct: 421 LQCPNCFCPVRYGRRMDPTGEYVR-FVP 447


>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 472

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 167/437 (38%), Gaps = 15/437 (3%)

Query: 1   MKATTAMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHG 52
           M     MS    + W  +DLR+ DNK L  A  + D ++  V+                 
Sbjct: 21  MTLGNGMSKRRGIYWFNHDLRLHDNKLLQKASEHVD-RLHCVYFDELKTMYDRRFLPVEI 79

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
             + +  F   +L ++ +SL Q G V      ++ D+++  L+       +T L+     
Sbjct: 80  DDSAKREFKMQALGELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSA 139

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
               +          +  ++    D   L     +      +   +T F+  +   +V +
Sbjct: 140 SWY-IDYVVTKALLKRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVPS 198

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             ++       +                 +    +         H+   F  +    Y  
Sbjct: 199 PSQTTTQLPRPMNNRDGLPASYGCEPSSLKLHSSVRGGELAGLGHVRDYFATQAALSYKS 258

Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+       +++ S +L+ G +SPR   N+L     +         +  L EL+WRE++
Sbjct: 259 TRNELDNWSSSTKFSLWLANGNVSPRAVVNQL--HRFEQKHGSNESTYWILFELLWREYF 316

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                 Y +       I     +     S L Q W +G T FPI++A M QL   G+M N
Sbjct: 317 HWYSHKYGAKLFAFGGIQDKRPLTTFYASRLRQ-WVEGNTPFPIVNACMNQLRETGYMSN 375

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R + AS LV +L +DWR G  YF   L+D D+ SN G WQ+ A  G D     R F+ 
Sbjct: 376 RGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRG-NRKFDL 434

Query: 412 TIQGKRFDPQGTFIRHW 428
             Q + +DP+  FIR W
Sbjct: 435 DKQSQLYDPESVFIRKW 451


>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
          Length = 461

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 10/246 (4%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL + +  +         S   +L+WREF+       P  
Sbjct: 135 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 193

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 194 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 252

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP
Sbjct: 253 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 311

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + + 
Sbjct: 312 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 371

Query: 475 YAAKKQ 480
               +Q
Sbjct: 372 KQIYQQ 377


>gi|223944515|gb|ACN26341.1| unknown [Zea mays]
          Length = 470

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 14/263 (5%)

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLN 283
             Y   R       TS LSPYL  G LS R+ +++++ +      D     +     +L 
Sbjct: 1   MDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLR 60

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L
Sbjct: 61  SIGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 119

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D  
Sbjct: 120 WATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 179

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457
              RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYP
Sbjct: 180 ELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYP 239

Query: 458 LPIVDHKKACHH---TLNQYYAA 477
            PIV+   A       L++ +  
Sbjct: 240 RPIVELDAANSRLQDALSEMWEL 262


>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
 gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
          Length = 626

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/534 (17%), Positives = 151/534 (28%), Gaps = 82/534 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  VF   P    +      +  ++      +  
Sbjct: 7   IYWFRTDLRLHDSPALTAALELEPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQNDLSA 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-------- 120
           S+++          +                  +VT L + +  +     RD        
Sbjct: 67  SITKLNPKSKLFVLREG----PQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAAR 122

Query: 121 -------KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                      + L         +        S L  A            A  +     +
Sbjct: 123 EAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDPGE 182

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +          T P   +                 P G+     +           +   
Sbjct: 183 MPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETMEELGFPSATTPHRGG 242

Query: 234 RDI---------------------------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                                            Q T+ LSP++  G LS R+ + +  + 
Sbjct: 243 ESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFYWQAVDA 302

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----- 321
                        S   +L++R+ Y    A             +   I W+  S      
Sbjct: 303 VKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGNAYCRFIPWHLPSKVNTET 362

Query: 322 ----------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD- 364
                             + WK G TGFP IDA MRQL   GW+H+  R   A FL +  
Sbjct: 363 GLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVACFLTRGG 422

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             +DW  G E F   L+D + A N G WQW +        YFR ++P   G+++D +G  
Sbjct: 423 CYIDWERGCEVFEEWLIDHEPACNAGNWQWLS-CAAFFSQYFRCYSPVSFGQKWDKEGLL 481

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I      L                 +     YP P+ D  +     L     A 
Sbjct: 482 I------LRK-----RGQAWCNGLDDREEGTYPKPMFDFNERRTACLAAMKKAY 524


>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 639

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 119/260 (45%), Gaps = 26/260 (10%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPYL  G +S R  ++R+++          +   S   +L+WREF+       P  
Sbjct: 346 TTSLSPYLYFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQF 405

Query: 302 CMGKPFIPWTEKIEWNKD------------------SHLLQAWKQGYTGFPIIDAAMRQL 343
              +                                    +AWK+G TG+P IDA M QL
Sbjct: 406 DKMEGNPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQL 465

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GWMH+  R   A FL + DL + W  G E F  +L+D D + N G W W +++   +
Sbjct: 466 KEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFT 525

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456
             YFR+++P+  GK++D +G FIR ++P L  +P++YI+ P              +  +Y
Sbjct: 526 A-YFRVYSPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDY 584

Query: 457 PLPIVDHKKACHHTLNQYYA 476
           P PIVDHK A    +    A
Sbjct: 585 PFPIVDHKIAMRRCMAGMKA 604



 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 13/146 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA-------KVIAVFIATPEQWRQHGISARQSHFIY 62
            ++W R DLR+ DN AL+ A    ++       ++I ++I    + ++      +  F+ 
Sbjct: 60  AIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYII--HRPKRLLCGVNRFQFLL 117

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  + ++++ +G      +     + I+         ++T +F+++  E   + RD  
Sbjct: 118 ESVGTLAEAIAARGSRLIIAR----GEGIDVFRRILPAWKITHIFFDQAIEPFAIARDHQ 173

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSIL 148
           + +      +         L     +
Sbjct: 174 VRELAASLNVHVETTHGYTLYDQDKV 199


>gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 445

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 98/422 (23%), Positives = 146/422 (34%), Gaps = 26/422 (6%)

Query: 5   TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52
           T+M+     L+W R  LR+ DN AL  A   S+     VF+  P                
Sbjct: 18  TSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSR 76

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLF 107
               +  F+  SL  +  SL + G      +    +  +  L        C +      +
Sbjct: 77  AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYY 136

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
                ++ +      +E          +    +    G          KV      A  +
Sbjct: 137 QALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSE 196

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-----ALHILRKF 222
            ++             L     PS     +    QA    F  GE          I  K 
Sbjct: 197 LVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA 256

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                              T+ +SPYL  G LS R  +  L+  + D+         S L
Sbjct: 257 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLL 315

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA M Q
Sbjct: 316 GQLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQ 374

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +   
Sbjct: 375 LLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFF 434

Query: 402 SV 403
             
Sbjct: 435 YQ 436


>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 441

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 174/429 (40%), Gaps = 16/429 (3%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHF 60
           M+V  L WL  DLR+ DN+  +    +    ++ V+   P      +++   +   +  F
Sbjct: 1   MAVRALYWLTQDLRLHDNEIFHQ-VRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  +L++ G      Q     + +  L +   Q R+  ++ +R     E ++ 
Sbjct: 60  LLQSLQTLHSNLTRFGQQLVVVQA----EPLLSLPALIQQHRINVIYRSRHCGWYEQQQW 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + +++   H    +    ++        + +          +       V   L      
Sbjct: 116 QYIKQYFPHLRFVEVDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYL 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAI 239
                   +             +            +H+ + F  +    Y E R+     
Sbjct: 176 PPPPKMNSSDYLDIGRVYIADNSNVEWQGGENAALMHLKQYFSCDAPANYKETRNALAGW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + +++ SP+L+ G LS +     LK+   ++        +    EL+WREF+    A   
Sbjct: 236 ELSTKFSPWLACGSLSAKTIMAALKDYEQNVTANS--STYWIFFELLWREFF-QWHAHVV 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + +      +++  +      + W  G T +P+++A M+QLN  G+M NR R I AS
Sbjct: 293 GRHLYRFSGVQNKRLLTSFYPSRFKQWCSGSTPYPLVNAFMKQLNQTGYMSNRGRQIVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LV +L +DWR G  YF  QL+D D+ASN G WQ+ A  G DS    R F+   Q + FD
Sbjct: 353 CLVNELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWFDIEKQTRLFD 411

Query: 420 PQGTFIRHW 428
           P   FIRHW
Sbjct: 412 PDHAFIRHW 420


>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
 gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
          Length = 445

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 166/435 (38%), Gaps = 25/435 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54
           MK      + L W   DLR+ DN  L  A    D +++ ++     TP      ++  + 
Sbjct: 1   MKKK----IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  FI ASL ++  +L Q G          +    + L        VT L+ +     
Sbjct: 56  RARQKFIDASLCELNDALGQLGQRLWTLDLPPY----QALRYAIQYLGVTHLYADAMAGS 111

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E      L+    H VI +    S+                          + +   D+
Sbjct: 112 DEQSILHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDL-----PETFTQFRKCVEGIDI 166

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                   RL      + +P    + F               H  R F       Y E R
Sbjct: 167 AHPIDAPSRLPPMPKDAQLPTLSSFYFDESALFSGGEWSGLAHCRRYFSSGLASSYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SPR  +  LK+   +         +    EL+WRE++  
Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y         I     +         Q WK G T +PI++A M QLN  G+M NR 
Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTQYPIVNACMHQLNHTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHW 428
           Q + +DP   FI  W
Sbjct: 403 QTQMYDPNHEFIERW 417


>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
 gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 722

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/533 (18%), Positives = 167/533 (31%), Gaps = 96/533 (18%)

Query: 14  LRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------------- 53
           +R +LR++DN   +        +  + ++ V++   +Q    G                 
Sbjct: 1   MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60

Query: 54  ------SARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVT 104
                    ++ F+  S+  ++ SL   G                 +E L +   Q    
Sbjct: 61  GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
            +  +   E     +                 D+  L+         L          + 
Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYRK 180

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----------------------- 201
            I+ L +   ++LPVP           ++      PF                       
Sbjct: 181 QIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKNFLKD 240

Query: 202 --------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIG 252
                   ++  P           I        +  Y + R+       +++LS YL+ G
Sbjct: 241 LPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLSAYLAQG 300

Query: 253 VLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPSVC 302
            ++ RQ  + L         K             G  +   EL+WR++ R     Y    
Sbjct: 301 CVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDKL 360

Query: 303 MGKPFIPWTEKIEWNKDSHLLQA------------------------WKQGYTGFPIIDA 338
                          +D                              +  G TG  +IDA
Sbjct: 361 FRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLIDA 420

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           + R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++SN   WQ+ A  
Sbjct: 421 SQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGV 480

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450
           GND     RIFNP  Q   +D  GT++R W+PE+      + +    +   ++
Sbjct: 481 GNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTASKED 533


>gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 440

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 159/425 (37%), Gaps = 19/425 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYAS 64
            L     DLR+ D+  L  A   S+ ++  V+        P+ +    +  ++  F+   
Sbjct: 7   SLFVFSKDLRLHDHPGLKQANDLSE-RLACVYFLSPYEFEPKSFSVCPMGKQRYEFLRQG 65

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++ SL+         Q    +     L+    Q ++  +F +R     E      + 
Sbjct: 66  LCDLRNSLNDIDHELHVFQ----EKVAPGLERIIEQNKIEAVFASRCAGTYE----NQVW 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             LQ R               +I    L      +  +           L    + ++  
Sbjct: 118 VSLQKRQPNLKIHLVDSHTLFNIDQPDLSKSFYNSFSQFRRQAEKWPQPLPMATILSLPA 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243
             PV   +     D    +   +    ++   H+   F       Y   R+     + +S
Sbjct: 178 AMPVATDSARINLDDNRSSALCITGGEQKGLEHLYDYFNGSYALQYKATRNALDGWENSS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + S +L+ G LS R     L++   + L            EL+WREF++    FY     
Sbjct: 238 KFSYWLAQGSLSVRLILQELRQ--FESLHSNNESTEHLYMELLWREFFQWYSHFYGKQLF 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               I     +           W +G+T +P+++A M QL T G+M NR R I AS L+ 
Sbjct: 296 YFSGIQKKRPLTTFYPQAFRM-WLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLLN 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L VDWR G + F   LLD D+A+N G WQ+ A  G D     R FN   Q + +DP   
Sbjct: 355 ELKVDWRAGAQAFEHYLLDYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDNL 413

Query: 424 FIRHW 428
           FI  W
Sbjct: 414 FIDKW 418


>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
          Length = 705

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 168/529 (31%), Gaps = 89/529 (16%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQW------------------- 48
           +   R+DLRI DN  ++    A  +    V+ +++    Q                    
Sbjct: 8   IYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSPYPEARS 67

Query: 49  ---RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQR 102
              +       ++ F+  S+  +++SL                  DD +        +  
Sbjct: 68  QIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFADKKQKVG 127

Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
              +      E     +                 D+   +    +   +           
Sbjct: 128 AVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSELADVFTAF 187

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVT-------------------------------PS 191
           +   + L +    +LP P      P                                 P 
Sbjct: 188 RKTQEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAALLKPLKSPF 247

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250
           N    F    +++ P     +     +        V  Y + R+ +  +  +++LS YL+
Sbjct: 248 NEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVDFSTKLSAYLA 307

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPS 300
           +G L+ RQ    L +       +             G  +   EL+WR++ R     + +
Sbjct: 308 LGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMRLCTMKFGA 367

Query: 301 VCMGKPFIPWTEKIEW------------------NKDSHLLQAWKQGYTGFPIIDAAMRQ 342
                         +W                  +    +LQ +  G TG  +IDA+ R+
Sbjct: 368 KLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTGMGLIDASQRE 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+  NR R   ASFL K L +DWR G E++   L+D D+ SN   WQ+ A  GND 
Sbjct: 428 LYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNWQYVAGVGNDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450
               RIFNP  Q   +D  G +++ W+ E   V   + +    +   + 
Sbjct: 488 RGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEE 536


>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
          Length = 695

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 168/513 (32%), Gaps = 88/513 (17%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIA------------TPEQWRQHGI-- 53
           +  LR DLR+ DN  L+    A  +    ++ V++               EQ        
Sbjct: 8   VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67

Query: 54  --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
                      ++ F   ++  +++SL + G        S  D     ++          
Sbjct: 68  QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY---KVYTPFR 162
             +  +    E  +++     L  +   +              +  L+            
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFKLWKDEKYFVDDRDTGLENPADLPDVFTTY 187

Query: 163 KALIQNLVQADLRSLPVPAI------------------------------RLTGPVTPSN 192
           +   + L +   + LP PA                               RL  PV    
Sbjct: 188 RKSQEPLREKPRKVLPRPAKSALPAFPQEGSIPAQAHPFLSPVSLEDLQKRLVKPVENIM 247

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGTSQLSPYLS 250
                          F  GE +    LR   K       +  R+    +  + +LS YLS
Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLS 307

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPS 300
           +G L+ RQ    L +       +             G      EL+WR++ R   A +  
Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367

Query: 301 VCMGKPFIPWTEKIEWNKDS------------------HLLQAWKQGYTGFPIIDAAMRQ 342
                         +    +                   +L+ ++ G TG  +IDA+ R+
Sbjct: 368 KLFRLSGFRQDSSYDKKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRE 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+  NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ A  GND 
Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
               R FNP  Q   +D +G ++R W+PEL  +
Sbjct: 488 RGDARTFNPVKQAFDYDKEGIYVRMWVPELQGL 520


>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
 gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH
 gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
          Length = 445

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/435 (23%), Positives = 162/435 (37%), Gaps = 25/435 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54
           MK      + L W   DLR+ DN  L  A    D +++ ++     TP      ++  + 
Sbjct: 1   MKKK----IGLYWFTFDLRLHDNSLLVDASSFLD-ELVCLYCRPSVTPFLHHFAQEVTLG 55

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  FI ASL ++  +L Q G          +      +    +   +         E 
Sbjct: 56  RARQKFIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTH-LYSDAMAGSDEQ 114

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           + + + +     L                P ++ +      +         I + + A  
Sbjct: 115 SILHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPS 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           R  P+P             P    + F               H  R F       Y E R
Sbjct: 175 RLPPMPKGAQL--------PTLSSFYFDESALFSGGEWSGLAHCRRYFFSGLASSYKETR 226

Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +    +  +++ SP+L++G +SPR     LK+   +         +    EL+WRE++  
Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y         I     +         Q WK G T +PI++A M QLN  G+M NR 
Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYPIVNACMHQLNHTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402

Query: 414 QGKRFDPQGTFIRHW 428
           Q + +DP   FI  W
Sbjct: 403 QTQMYDPNHEFIERW 417


>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
 gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
          Length = 451

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 172/437 (39%), Gaps = 24/437 (5%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHF 60
           MS+  L W  NDLRI+DN  L  A  NS        I                   +  F
Sbjct: 1   MSIRSLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +   L   G   Q        +++  L  +        L+ +   +   + + 
Sbjct: 61  LLESLADLDAKLQTLGQSLQI----ATGEAVSQLCQFIELTEANHLYVSESVDFA-IHQT 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQA 172
               +    ++   S +   L     +      +   ++ FRK +         Q+    
Sbjct: 116 LREVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARWN 175

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +   P++  +     S   R  +   ++             H+   F  +    Y +
Sbjct: 176 SDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDASLIYKQ 235

Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+     + +++ SP+L+ G LS  +   RL +             +    EL+WRE++
Sbjct: 236 TRNALDEWESSTKFSPWLANGCLSIGRLLARLNDYETQRGANE--STYWIYFELLWREYF 293

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +     Y +       I     +        +++W  G T +PI++AAM+QL   G++ N
Sbjct: 294 QWYALKYGAQLFQFSGIKGQVPLTSYYP-QRMRSWINGTTPYPIVNAAMKQLKATGYLSN 352

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R + AS LV +L +DWR G +YF SQL+D D+ASN G WQ+ A  G D   + R F+ 
Sbjct: 353 RSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRR-FDL 411

Query: 412 TIQGKRFDPQGTFIRHW 428
             Q   +DP+ +FIRHW
Sbjct: 412 AKQTALYDPELSFIRHW 428


>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
 gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
          Length = 640

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 85/533 (15%)

Query: 11  LVWLRNDLRITDNKALYA-ACHNSD-AKVIAVFIATPEQW-------------------- 48
           +  LR DLR TDN  L+  A  +     ++ V++  P Q                     
Sbjct: 8   VYLLRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQ 67

Query: 49  --RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105
             R       ++ F   S+  ++ SL   G        S  D   + + +       V  
Sbjct: 68  VGRFWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDA 127

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           ++        EV     +      + +                     ++  Y   ++ L
Sbjct: 128 VWMTEDVSSEEVDDQDAVSAVCSEKSVGFKLWRDDKYFIDDNPKELPDVFTSYRKTQEPL 187

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-------------------- 205
            +   ++  R        L     P + P      ++  +                    
Sbjct: 188 RERPRRSLPRPQAGSLPPLPPWTPPQDAPFQVPDTYEEFERRLLQPIDYMLANPPVLPQD 247

Query: 206 ----PMFPIGEQNALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQC 259
                 F  GE  A   LR   +   +  Y E R+       +++LS YL++G +S R  
Sbjct: 248 AKSAHPFDGGESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCISARSI 307

Query: 260 WNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
              L +                     G  +   EL+WR++ R     + +         
Sbjct: 308 HEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFRVSGFK 367

Query: 310 -------------------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                                +     +   ++  + +G TG   IDA+ R+L   G+  
Sbjct: 368 GATGQYEKKWKTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYHTGYTS 427

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ A  GND     RIFN
Sbjct: 428 NRARQNVASFFSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGDARIFN 487

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVD 462
           P  Q   +D  G ++R W+PE+  +   + +    +  ++  L       IVD
Sbjct: 488 PVKQAFDYDNNGAYVRTWVPEVKYIEKLENVFQVWTTDEEELLKYG----IVD 536


>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 462

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 194/456 (42%), Gaps = 38/456 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53
           MK      + L    NDLRI DN+ LY A  + D K+I V I  P       +  ++   
Sbjct: 1   MKK-----IGLYLFTNDLRINDNQLLYYAAQSVD-KLICV-IVEPTLVRFSADLAQEQSY 53

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQ 111
           SA +  F+  S+  ++ +L + G      + ++   D + + L    + Q VT  F N  
Sbjct: 54  SAHRQAFVSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAH 113

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              +E +  + ++++  +  +      S L     +     ++   +T FRK +    V 
Sbjct: 114 CGYDERQLIRSIQRQSPNL-VMCLPHHSTLFDSHELPFELSKVPSSFTKFRKLVEHLDVN 172

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVY 228
            +   +      +   +T ++    F  P      I   +        H+   F  +  +
Sbjct: 173 RNETVISALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDYAF 232

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y + R+    I+ +++ SP+L++G +SP+  +  LK+   +         +    EL+W
Sbjct: 233 NYKQTRNVFDGIENSTKFSPWLALGCVSPKTIYCHLKQ--FEADHGINDSTYWIYFELLW 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQLNTI 346
           RE++        S   G+           +   +L  A WK G T +PI+DA MRQLNT 
Sbjct: 291 REYFYWKCLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTT 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-------- 398
           G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A          
Sbjct: 351 GYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQ 410

Query: 399 ------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
                  N + P  R F+   Q   +DP   FI  W
Sbjct: 411 TNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 446


>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
 gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 651

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/530 (16%), Positives = 167/530 (31%), Gaps = 89/530 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWR------------------ 49
           +  +R DLR+ DN  L++  HN D     ++ +++   +Q                    
Sbjct: 8   IYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYPEAR 67

Query: 50  -----QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL----Q 100
                       ++ F+  S+  ++    + G           +     ++ +      +
Sbjct: 68  SQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIRVGMVDEIVKGLIERFEEGAGSK 127

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
                +      E     R                 D+   +    +     +       
Sbjct: 128 VSAVWMTSEEGVEEKREERSTKKICDKAGVDFKLWQDEKYFVDDRDLPFEDPKDLSDIYT 187

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA----------------- 203
             +  ++ L  A    LP P +    P      P+   +                     
Sbjct: 188 TYRKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEEIEAALLKPINSQP 247

Query: 204 --------------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPY 248
                         + P           +        +  Y   R+       +++LS Y
Sbjct: 248 LVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNGLMGTDFSTKLSAY 307

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKS------------GAFSWLNELIWREFYRHLMA 296
           L++G ++ RQ    +           +             G ++   EL+WR++ R    
Sbjct: 308 LALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRDYMRLCTR 367

Query: 297 FY--------------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +               +           +     +   +++ +  G TG   IDA+ R+
Sbjct: 368 KFGPQLFRLGGFKAEGNAHSKWSRLDSPKDGFSKEQIQEIVERFLNGTTGMGFIDASQRE 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           +   G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+ A  GND 
Sbjct: 428 IYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYVAGVGNDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKND 451
               RIFNP  Q   +DP+  ++  W+ EL  V     I    +  D+  
Sbjct: 488 RGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVDELGQIFQAWTINDEEK 537


>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
 gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
          Length = 441

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 173/431 (40%), Gaps = 24/431 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
           M + LVW  +DLR  D   L+ A    D  +I ++   P      ++   G+SA +   +
Sbjct: 1   MKLGLVWFGDDLRCADQNMLWRAVQEVDY-LICLYCDEPHNNHPSRYATQGMSANRRRLL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +   L   G            D+   L+    +  ++ L+ N     +E +   
Sbjct: 60  NQGLQDLALQLQALGQTLFVSSM----DAATSLNLLLNEIPISHLYRNHHGGWDEQQTLN 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +E R     I      S+  P     + A               + LV+      P+PA
Sbjct: 116 RIESRYSDVRIHLDHGLSLFTPSQLPFDIAQLPDSFSK------FRRLVENLDVFTPLPA 169

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           ++   P    +I     +  + I+               +   F      +Y E R+   
Sbjct: 170 LQKLPPAPTFDIQCIRPWQLKQIEDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELD 229

Query: 239 -IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             + +++ SP+L+ G LS RQ    +     D         +    EL+WRE++ H  A 
Sbjct: 230 GWENSTKFSPWLAQGSLSARQIKASIDVYERDHGANE--STYWIYFELLWREYF-HWYAT 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                +  P     ++ + +  +   + W QG T +P+++A M+QLN  G+M NR R I 
Sbjct: 287 CYGKQLFLPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMSNRGRQIV 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS L+ +L +DWR G  YF  QL+D  + SN G WQ+ A  G D     R FN   Q ++
Sbjct: 347 ASCLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFNLQKQTEQ 405

Query: 418 FDPQGTFIRHW 428
           +DP   FI  W
Sbjct: 406 YDPNLHFIHKW 416


>gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%)

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF V
Sbjct: 2   HERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAV 61

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP G
Sbjct: 62  KFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDG 121

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQ 473
            ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A       ++ 
Sbjct: 122 EYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIST 181

Query: 474 YYAA 477
            +  
Sbjct: 182 MWQL 185


>gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 343

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 115/294 (39%), Gaps = 14/294 (4%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPR 257
                  M   G + A   L  F   +   Y      P    T+   LSPYL+ G +S R
Sbjct: 33  WLSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLR 92

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE--KIE 315
           + +  L + +       +    +  + L W   +         +        +    K  
Sbjct: 93  EVYQYLLKHWQVAG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYCVNRAYEPLIKQS 150

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
              D   L AWK G+TG P+IDA MR L+  G+++ R+R +  SFL   + +DWR+G  +
Sbjct: 151 STFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVTH 210

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
                LD +   +   +Q  A  G       RI+NP  Q +  DP GTFI  W+PEL  V
Sbjct: 211 LAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPIKQAQEHDPNGTFIYKWVPELQMV 268

Query: 436 PTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           P   +  P +                Y  PI+           + +A +K++ +
Sbjct: 269 PPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDNTAKAARERLWAWRKRADV 322


>gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 147

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/140 (47%), Positives = 89/140 (63%), Gaps = 1/140 (0%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RM+ ASFLVK+LL+DWR GE++F   L+D DLASN   WQW A +G
Sbjct: 1   MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL 458
            D+ PYFR+FNP  Q K+FD  G ++R ++PEL  + ++ IH P       +D  L YP 
Sbjct: 61  ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEPWKIKPTLDDKPLEYPD 120

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           P+VD   +    L  Y   +
Sbjct: 121 PLVDLGVSRERALEAYAELR 140


>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 466

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 182/459 (39%), Gaps = 40/459 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53
           MK      + L    NDLRI DN+ L+ A   S  K+I V I  P       +  ++   
Sbjct: 1   MKK-----IGLYLFTNDLRINDNQLLHYAVQ-SVGKLICV-IVEPTLVRFSADLAQEQSY 53

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQ 111
            A +  F+  S+  ++ +L + G        ++   D + + L      Q VT  F N  
Sbjct: 54  GAHRQTFVSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAH 113

Query: 112 YEI------NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
                    + ++                     +      + +   +  K+        
Sbjct: 114 CGYDERQLIHSLQSRHPNLITCLPHHSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNR 173

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + ++ A   ++ +     +   +  ++    +     I   +   +    H+   F  +
Sbjct: 174 NETVISALPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHD 233

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             + Y + R+    I+ +++ SP+L++G +SP+  +  LK+   +         +    E
Sbjct: 234 YAFNYKQTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQ--FEADHGSNDSTYWIYFE 291

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQL 343
           L+WRE++        S   G+      +    +   +L  A WK G T +PI+DA MRQL
Sbjct: 292 LLWREYFYWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVDACMRQL 351

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST----- 398
           NT G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A       
Sbjct: 352 NTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQV 411

Query: 399 ---------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
                     N + P  R F+   Q   +DP   FI  W
Sbjct: 412 STQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450


>gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 462

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 14/250 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L  
Sbjct: 1   NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 60

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 61  NHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 119

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G 
Sbjct: 120 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGY 179

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC--- 467
           +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A    
Sbjct: 180 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRL 239

Query: 468 HHTLNQYYAA 477
              L++ +  
Sbjct: 240 QEALSEMWQL 249


>gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
 gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%)

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF V
Sbjct: 2   HERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAV 61

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP G
Sbjct: 62  KFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDG 121

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQ 473
            ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A       ++ 
Sbjct: 122 EYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIST 181

Query: 474 YYAA 477
            +  
Sbjct: 182 MWQL 185


>gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 148

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 94/146 (64%), Gaps = 6/146 (4%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG
Sbjct: 1   MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLS 453
            D+ P+FRIFNP  Q ++FD    FI  ++PEL  +P    HAP              L 
Sbjct: 61  CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLG 120

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479
            +YP P+VDH  A   TL +Y   K+
Sbjct: 121 KDYPHPVVDHAAARERTLARYGVVKQ 146


>gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus]
          Length = 563

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 40/486 (8%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           L       LR+ DN ALY A   +  K  AV+I     +    ++  +  F+   L  ++
Sbjct: 48  LHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFDG--FDSKPVAPVRWQFLIDCLEDLK 105

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  G+     +     ++I+ L +     +V  L  N   ++N    ++ + K    
Sbjct: 106 EQLNGFGLELYCFR----GETIDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKMCTI 161

Query: 130 RVICKSFDDSVL--------------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             +    D                  +    +L       K      +A IQ++      
Sbjct: 162 NAVQLYNDMDSHRLLYLPPKYKSAIPMSKFRVLLAEAITAKQNNLESEAKIQDITPPLNP 221

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                        +P              + +  +         R       Y     RD
Sbjct: 222 EQLSDLGNKPRLDSPLPSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREARLRD 281

Query: 236 IPAIQGTS-------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +   +  S        +SP+L  G ++PR  +N L +   D     +      L  ++ R
Sbjct: 282 VSGDEDASPIAAKAMGISPHLRFGCITPRHLFNFLVKTIKDA-NYSRIKINKVLAGIMAR 340

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           +F   +                   I W+  ++ +++      TGFP  DAA+ QL T G
Sbjct: 341 DFALQVSQLQTIPERIISLNKICLPIPWDKNNNEIVEKLTDAQTGFPFFDAAITQLKTEG 400

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPY 405
           ++ N +    A+F+    L V W  G+ +F   L+  DLA +   W  A+ +        
Sbjct: 401 YVINEVSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVTGRQK 460

Query: 406 FRIFNPTIQ-GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
               +P +   K+ DP G +I+ +LP+  N P ++IH P +            + ++YP 
Sbjct: 461 SYQ-DPLLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDIDYPK 519

Query: 459 PIVDHK 464
           P+ +++
Sbjct: 520 PLFEYE 525


>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 473

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 94/433 (21%), Positives = 155/433 (35%), Gaps = 16/433 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62
           MS  L+WLRNDLR+ D   L+AAC      ++ V      Q    W    I   +  ++ 
Sbjct: 43  MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  + ++  +                     +      V +       +         
Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIVCEDIAAPDEQAEVEALRAS 162

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +            D +  P   + +      +     +      L   +      P I
Sbjct: 163 GLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQPYPPLPVPEALPRVPPHI 222

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDI 236
                            P  ++D                 H+ +   +   + Y   R+ 
Sbjct: 223 PNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQYLARGLPHSYKRTRNG 282

Query: 237 PAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 +S+ S +L+ G LSPRQ +  L++   +        ++    EL+WR+++R L 
Sbjct: 283 LVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWRDYFRFLH 340

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +         +          D     AW  G TG  ++DAAMR+L   G++ NRLR 
Sbjct: 341 MQHGRALYRARGLGPELATPH--DDQNFAAWCSGQTGKTLVDAAMRELAATGYLSNRLRQ 398

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + AS+L+ DL  DWR G  +F SQLLD D+ SN G W + A  G D     R F+P  Q 
Sbjct: 399 VAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQG-GRRFDPVKQA 457

Query: 416 KRFDPQGTFIRHW 428
             +D  G + R W
Sbjct: 458 ATYDADGAYQRLW 470


>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
          Length = 336

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 10/246 (4%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       P  
Sbjct: 10  PTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRF 68

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 69  DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 127

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP
Sbjct: 128 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 186

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + + 
Sbjct: 187 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 246

Query: 475 YAAKKQ 480
               +Q
Sbjct: 247 KQIYQQ 252


>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
 gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
          Length = 412

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 173/428 (40%), Gaps = 33/428 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT--PEQW----RQHGISARQSHFI 61
           +V L W  NDLR  +N  L  A +  D +++AV+      E       +H +   +  FI
Sbjct: 4   TVGLYWFINDLRRLNNSLLDRAINEVD-ELVAVYCLPHVTEYLAAFSGEHNLGTHRERFI 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + S+  + +SL+  G+     +        E ++    Q+ V+ L+ +     +E     
Sbjct: 63  HQSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMIN 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++++     + +S + ++                             + A         
Sbjct: 119 VIKQKFPTLEVIQSDNTTLFHSDQLPFPLDE-----------------LPATFTQFRKQV 161

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQ 240
             +   + PS    +          +         H+   F +     Y E R+      
Sbjct: 162 EPIFELLYPSQDALYRLGEIATPTGVVGGERAAIQHVTWYFSQPFASSYKETRNHLEGES 221

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            ++  SP+L++G +SP Q    L++   +         +  + EL+WRE++      +  
Sbjct: 222 SSTHFSPWLALGCISPAQIVALLRQY--EQRNGANQSTYWIIFELLWREYFYWYGRKHQQ 279

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  +  +++     D    Q W +G T F I+++ M QLN  G+M NR R + AS 
Sbjct: 280 RVFYFSGL-TSKQALKPFDDEAFQRWVKGETDFAIVNSCMNQLNETGFMSNRGRQLVASC 338

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D  P  R FN   Q + +DP
Sbjct: 339 LIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNP-SRRFNLAKQAELYDP 397

Query: 421 QGTFIRHW 428
             +F R W
Sbjct: 398 DSSFTRRW 405


>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
 gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
          Length = 447

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 102/450 (22%), Positives = 174/450 (38%), Gaps = 36/450 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53
           MK      + L    NDLRI DN  L+ A    D +++ V I  P          ++   
Sbjct: 1   MKK-----IGLYLFTNDLRINDNTLLHRASQLVD-ELLCVAI-EPKLSTYSVRLSQEQHN 53

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A +  FI  ++  +  +L++ G      + +  +D    L      Q+VT  F +    
Sbjct: 54  GAHRHLFIKQAINDLALNLARLGQRLFVLERNKSED----LVQLVKSQQVTHFFASSHCA 109

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            +E +  K    +     I +    ++     +      ++ + +T FR  + +  +  +
Sbjct: 110 HDERQLIKDTLTQCPDLFISQQHHTTLF-ESDAFPFELTKLPRSFTKFRLQVERLEINTN 168

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              +            P   P          D +                     Y   +
Sbjct: 169 ESVVAYLPPAPQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTR 228

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             +  I+ +++ SP+L++G +SP+  +  LK+   +         +    EL+WRE++  
Sbjct: 229 NALDGIENSTKFSPWLALGCVSPKTIYRHLKQ--FEAHRGANDSTYWIYFELLWREYFYW 286

Query: 294 LMAFYPSVCMGKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                 +   G+       E++           WK G T +PI+DA MRQLN  G+M NR
Sbjct: 287 KCLTLGTSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP-------- 404
            R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A   N   P        
Sbjct: 347 GRQLVASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSV 406

Query: 405 ------YFRIFNPTIQGKRFDPQGTFIRHW 428
                   R F+   Q + +DP+  FI  W
Sbjct: 407 AHQSQFKSRHFDLVKQTEMYDPEHAFINKW 436


>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
          Length = 517

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 176/494 (35%), Gaps = 29/494 (5%)

Query: 9   VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---SHFIYAS 64
             + W R D LR+ DN A   A    D    AVFI  P     +     Q     F+  +
Sbjct: 21  TTVHWFRLDALRLHDNPAFVDAVKT-DGNFKAVFIIDPWFNANYNNGGPQVNVWRFLLEA 79

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L +K   +       +      L     +  V K+ +      +E  +   + 
Sbjct: 80  LHDLDSRLQKK--PYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESMKHDGII 137

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQADLRS 176
           K L  +   ++               AL   +V   +++            + +      
Sbjct: 138 KILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHPM 197

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---- 232
                   +  V                D                  +   +        
Sbjct: 198 SLCMKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAIP 257

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
              +  +     LSPY+  G LS RQ +++L + F     K +         L+ REF  
Sbjct: 258 NEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQ-FASTSSKGQELFELLTKNLLLREFAF 316

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            + +  P   + +       ++ W  ++  +QA++ G TG+P IDA +RQ+   GW H  
Sbjct: 317 LVGSSSPKFDVME-GNSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAHFL 375

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL +  L + W +G+E+F   ++D +L  ++  W  ++ +G         ++P
Sbjct: 376 ARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCWMQSSCSGFFCTQ-IESYDP 434

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKK 465
            + GK+ D  G +I+ ++PEL + P++Y+H P      +  +        YP PI+D  K
Sbjct: 435 CLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCSSLHTEASWLCDREQYPKPIIDVCK 494

Query: 466 ACHHTLNQYYAAKK 479
                  +  +  K
Sbjct: 495 QGELCCKRVQSIMK 508


>gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
 gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
          Length = 651

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 92/537 (17%), Positives = 171/537 (31%), Gaps = 92/537 (17%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWR----------- 49
           MS     +  +R DLR+ DN  L++   N D     ++ +++   +Q             
Sbjct: 1   MSHSNILIYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCK 60

Query: 50  ------------QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
                              ++ F+  S+  ++  L +             +   + ++ +
Sbjct: 61  SPYPEARSQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIRVGMVDEVVKDLIEGF 120

Query: 98  CL----QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
                 +     +      E     R                 D+  L+    I     +
Sbjct: 121 QKTGGSKVSAVWMTSEEGVEEKREERSTEKICDKAGVDFQLWQDEKYLIDDRDIPFKDPK 180

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---------------------- 191
                    +  ++ L +A   +LP P      P                          
Sbjct: 181 DLPDVYTTYRKSVEPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIESALL 240

Query: 192 ---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQG 241
                      P  +     ++ P           +        +  Y   R+       
Sbjct: 241 KPINAQPLIKNPPSYPENSLSVHPFTGGESHAQERLEHLITSGSINAYKSSRNGLMGTDF 300

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS------------GAFSWLNELIWRE 289
           +++LS YL++G ++ RQ  + +           +             G +    EL+WR+
Sbjct: 301 STKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWRD 360

Query: 290 FYRHLMAFY--------------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           + R     +               +           + +   +   +++ +  G TG   
Sbjct: 361 YMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMGF 420

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+    G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+ 
Sbjct: 421 IDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYV 480

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKND 451
           A  GND     RIFNP  Q   +DP+  ++  W+ EL  V     I    +  D+  
Sbjct: 481 AGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVDELGQIFQAWTINDQEK 537


>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
 gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
          Length = 437

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 171/434 (39%), Gaps = 25/434 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISA 55
           MK      + L    +DLR+ DN AL     +S   +I +++  P+     Q+ Q   SA
Sbjct: 1   MKK-----IGLFIFDHDLRVLDNPAL-KVLADSVDTLICLYVHVPQDAFSQQFSQTQPSA 54

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+   L+++ ++L                     + +Y     +T +        N
Sbjct: 55  AKLGFLQQHLVELDENLRLLNQFLVIEH----GSVPSVVSNYIKHYGITDIGRTIHAGFN 110

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E    + L+        C +   S L     +      + K +TP RK   Q  V A L 
Sbjct: 111 EQHHWQYLQATFPAVKFC-AHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPAPLE 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +L      L  P+  +   +    P                ++   F  +    Y E R+
Sbjct: 170 ALTY----LPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRN 225

Query: 236 IPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  +++LS +L+ G LSPRQ    LK    +         +    EL+WRE++   
Sbjct: 226 ALMGDDFSTKLSGFLAHGALSPRQIMAALKRY--ESTQGANESTYWIYFELLWREYFYWY 283

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +         +   + +  +      + W +G T +P+++A MR+LN  GWM NR R
Sbjct: 284 ARKHQQRLFSAGGVRQ-KSLATSFYPSRFKQWCEGSTPYPLVNALMRELNETGWMSNRGR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            I AS  V +L +DWR G  YF  +L+D D+ SN G WQ+ A  G D     R F+   Q
Sbjct: 343 QIVASCFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GRHFHIKKQ 401

Query: 415 GKRFDPQGTFIRHW 428
              +DP   F+  W
Sbjct: 402 AALYDPNNAFVTFW 415


>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
          Length = 566

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 117/274 (42%), Gaps = 38/274 (13%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSP+L  G LS R+ + R+++          +   S   +LI+R+ Y    A   + 
Sbjct: 228 TTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAK 287

Query: 302 CMGKPFIPWTEKIEWNKDSH---------------------LLQAWKQGYTGFPIIDAAM 340
                  P+   I W+  S                        Q WK+G TGFP IDA M
Sbjct: 288 FTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWIDALM 347

Query: 341 RQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           RQL   GW+H+  R   A FL +    VDW  G E F   LLD + A N G WQW + T 
Sbjct: 348 RQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTA 407

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---- 455
             S  YFR ++P   G+++D  G  IR W+PEL N+ ++YI+ P     ++         
Sbjct: 408 FFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEPWKAPIQDQKKAGVRVV 466

Query: 456 -----------YPLPIVDHKKACHHTLNQYYAAK 478
                      YP P+ D  K     +N    A 
Sbjct: 467 GDGLGDQEQGTYPKPMFDFGKRRETCINAMKIAY 500


>gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 136

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/138 (58%), Positives = 101/138 (73%), Gaps = 2/138 (1%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG
Sbjct: 1   MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  P
Sbjct: 61  TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118

Query: 460 IVDHKKACHHTLNQYYAA 477
           IVD K+     +  +   
Sbjct: 119 IVDLKETRLKAIETFKNI 136


>gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
 gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
          Length = 421

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 185/425 (43%), Gaps = 26/425 (6%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASLLQVQKSLSQK 75
            DN  L  A  N++  VIAV+   P  +             ++ F+  ++  ++++L +K
Sbjct: 2   NDNAVLNHAVANNN-PVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ--HRVIC 133
            I        +       + +      ++ ++Y +++   E   + L+++ ++     + 
Sbjct: 61  NITLVV----SLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLH 116

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             +D  +  P     +   ++ K+YT FRKA  +  V   L +L +   +         I
Sbjct: 117 SYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYAI 176

Query: 194 PRFFDYP------FQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQ 244
           P+  D+              +  GE           +    +  Y E R+ +   + +S+
Sbjct: 177 PKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSSK 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
            S +L+ G +S RQ +  +K+   +  +K     +  + ELIWR+++ ++   Y +    
Sbjct: 237 YSAWLANGSISARQIYWDIKDY--EKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIFK 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              I   +   WNK    L+ W  G T +  ++A M +L   GWM NR R   AS+  K+
Sbjct: 295 LNGILSKDYN-WNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAKE 353

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWRIG  YF S L+D D+ SN G W + A  GND  P  R FN  +Q KR+DP   +
Sbjct: 354 LQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNREY 411

Query: 425 IRHWL 429
            + WL
Sbjct: 412 RKLWL 416


>gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group]
 gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group]
          Length = 334

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 9/173 (5%)

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            E   D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G 
Sbjct: 20  FENIHDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGM 79

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PEL 
Sbjct: 80  KYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELA 139

Query: 434 NVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYYAA 477
            +PT++IH P             +L  NYP PIVD   A      +++  +  
Sbjct: 140 RMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQL 192


>gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
 gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
          Length = 404

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 178/433 (41%), Gaps = 39/433 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISAR-----QS 58
           M   ++W +NDLR+ D+  L  A H+ D     +   F  +P Q+ ++          + 
Sbjct: 1   MKT-IIWYQNDLRVDDHLPLEEALHHDD----PIEGHFFISPNQFIENRYGVIPLGNERL 55

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  V  SL   GI F  H        +E LD                 +    +
Sbjct: 56  RFLKESLEDVSGSLDALGIPFYVH----VGHPLETLD---------------PSDRLLFQ 96

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R     +R +   + K +  +     G  L           PF     +  V+ D+R   
Sbjct: 97  RAVGYNERRRENEVMKRWKGTYKTFEGFTLFEKEDNPFEKMPFLFTEFRKAVEYDVRPRE 156

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDI 236
           + + + T        P       Q     FP   GE  A   L  +    +  Y E R+ 
Sbjct: 157 LISRKATAATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNG 216

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             +  +++LS YL+ G LSPR+ +  L+    +         +    EL+WREF++ +  
Sbjct: 217 FGVDDSTKLSAYLANGSLSPRRVFFELEAH--ERTHGVNESTYWLYFELLWREFFQWVAL 274

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                      I    K +W  D  +++ W++G TG   +DA MR+LN  GWM NR R I
Sbjct: 275 DQGKKLFRSQGIRSKRK-DWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGRQI 333

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            A++  K+L  DWR G  YF S+L+D D+ASN G W + A  GNDS    R FN   Q  
Sbjct: 334 VANYFAKELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSR--DRRFNIERQQF 391

Query: 417 RFDPQGTFIRHWL 429
            +DP   F   WL
Sbjct: 392 TYDPDRAFRNKWL 404


>gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays]
 gi|194694998|gb|ACF81583.1| unknown [Zea mays]
          Length = 428

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 10/219 (4%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R+L   +PS    +P +       W  D    + W+
Sbjct: 8   NEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWR 66

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S
Sbjct: 67  QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 126

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   +  D     RI NP  +G +FDP G ++R W+PEL  +PT++IH P    
Sbjct: 127 DALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAP 186

Query: 448 ------DKNDLSLNYPLPIVDHKKAC---HHTLNQYYAA 477
                    +L  NYPLPIV+   A       L++ +  
Sbjct: 187 VSVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQL 225


>gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
 gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
          Length = 400

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 165/375 (44%), Gaps = 79/375 (21%)

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 + P     P  A +  +  G + A HIL +F K KV  Y E RDIP   GTSQL
Sbjct: 8   AQCLDWSSPESEHNPTWASEFPWIPGSETAHHILTEFLKTKVSRYSESRDIPFESGTSQL 67

Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           SPYL+ G +SP +  + L+E     D        + ++  ELIWREF  HL+   P +  
Sbjct: 68  SPYLAHGEISPHRVLHALREVRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLAT 127

Query: 304 GKPFIPWTEKIEWNKDSHL--------------------------LQAWKQGYTGFPIID 337
                 W         +                               W+ G+TGFPI+D
Sbjct: 128 QNHNEQWNLFTWSQMATESQLTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVD 187

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MRQL  IGWMHNR+RMITAS L+K+L + WR+GEE+F + L+D D ASN G WQW A 
Sbjct: 188 AGMRQLWKIGWMHNRVRMITASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAG 247

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN------------------------ 433
           TG D+ P+FRIFNP  Q  RFD +  ++R W+PEL                         
Sbjct: 248 TGADAAPFFRIFNPARQADRFDQKCAYVRTWVPELKTKTTQEVAAMYEASPRKAAKEQDE 307

Query: 434 --------NVPTQYIH---------------APHSWLDKNDL----SLNYPLPIVDHKKA 466
                   ++ +Q+IH                P S             NY   IVD KK+
Sbjct: 308 DFLALTNPSLTSQWIHSSPNSGSTSNSVKYATPFSHAFSQRYVAVPETNYHNLIVDFKKS 367

Query: 467 CHHTLNQYYAAKKQS 481
               L+ Y   +K S
Sbjct: 368 RDLALSCYQTIRKNS 382


>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
 gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
          Length = 431

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 94/433 (21%), Positives = 158/433 (36%), Gaps = 16/433 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62
           MS  L+WLRNDLR+ D   L+AAC      ++ V      Q    W    I   +  ++ 
Sbjct: 1   MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR---- 118
            ++  + +S  +                     +      V +       +         
Sbjct: 61  NTIQNLAQSFHELRSQLLILDAPAAVALPALAQALGAGIIVCEDIAAPDEQAEVQALRAA 120

Query: 119 --RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             +   +            +    L    +    A++  K+       +++ L +     
Sbjct: 121 GLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKLQPYPPLPVLEALPRVPPNI 180

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                      +              AI  +         H+ +   +   + Y   R+ 
Sbjct: 181 PSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHLRQYLARGLPHSYKRTRNG 240

Query: 237 PAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 +S+ S +L+ G LSPRQ +  L++   +        ++    EL+WR+++R L 
Sbjct: 241 LVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWRDYFRFLH 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +         +          D     AW  G TG  ++DAAMR+L   G++ NRLR 
Sbjct: 299 MQHGRALYRARGLGPELATPH--DDQNFAAWCSGQTGQTLVDAAMRELAATGYLGNRLRQ 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + AS+L+ DL  DWR G  +F SQLLD D+ SN G W + A  G D     R F+P  Q 
Sbjct: 357 VAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQG-GRRFDPVKQA 415

Query: 416 KRFDPQGTFIRHW 428
             +D  G + R W
Sbjct: 416 ATYDADGAYQRLW 428


>gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
 gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
          Length = 454

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 155/440 (35%), Gaps = 27/440 (6%)

Query: 11  LVWLRNDLRITDN---KALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIY 62
           + W R DLR+ D     A           ++ VF+  P      +W    +S  +  ++ 
Sbjct: 16  IFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFARMSPHRRAWLA 75

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY------CLQQRVTKLFYNRQYEINE 116
           +++  +   L   G         + D  +  + +       C +    +        +  
Sbjct: 76  SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCDEIAAPEEQAVVAALLAA 135

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
               + + +          FD   +    +   HAL+   V        I+ L      +
Sbjct: 136 GVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQAARPLPSIKQLPPLPSHA 195

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---- 232
           L              +      +P+ A                      + Y        
Sbjct: 196 LLNAIPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHS 255

Query: 233 ---QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
               R+    +  +S+ SP+L+ G LS RQ W  ++    +        ++    EL+WR
Sbjct: 256 YKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQAFEAEHGANE--SSYWLWFELLWR 313

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + +R     +             E    + D      W +G TG P IDA MR+L   G+
Sbjct: 314 DHFR--WLHFKHGKRLYRARGLGEAHVPSHDPDHFARWCRGETGQPFIDAGMRELAATGY 371

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           + NR+R   AS+L+ DL  DWR G  +F SQLLD D+ SN G W + +  G D     R 
Sbjct: 372 LSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPRQ-GRR 430

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           FNP  Q + +D  G++   W
Sbjct: 431 FNPDKQAQDYDADGSYRALW 450


>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 420

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 158/429 (36%), Gaps = 43/429 (10%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL--------- 99
                  R+  F   ++  ++ +L ++G            +  E L +            
Sbjct: 1   NSLKCGPRRVQFALEAVADLRSNLEKRGSGLVV----AVGNPEEILATIATSAVESSGDN 56

Query: 100 ----QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
                    +   + +  +++  R  L +                 +     L     ++
Sbjct: 57  GALINVVCQEEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVF 116

Query: 156 KVYTPFRKAL--IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
            +   F      ++ + +            L+ P           Y  + I+ +  +  +
Sbjct: 117 GIPDTFTPFRNKVEKICEIGAPLDCPKDEYLSLPKNYMPTLFDLGYNAEDIESVSSVDSR 176

Query: 214 N--------------ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258
                                 + K  +  Y + R+ +     +++ +P+L++G +SPR 
Sbjct: 177 TALPVNYRGGETFALQRVKDYIWDKNLLKVYFDTRNGMIGSDYSTKFAPWLALGNVSPRY 236

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF----IPWTEKI 314
                     +         +  + EL+ R+ ++     +                +E+ 
Sbjct: 237 IARECSRY--EEQRVQNKSTYWVVFELLIRDHFKFFAKKHGDKVFYLTGTIGKQRGSERK 294

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           +W  D   +QAW+ G TGFP++DA MR+L   G+M NR R   ASFL  D+ +DWR G E
Sbjct: 295 KWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDMNMDWRYGGE 354

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           YF   LLD D+ SN G W   ++ G       R FN   Q K +D  G ++R W PEL N
Sbjct: 355 YFEETLLDYDVHSNWGNW--CSAAGMTGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKN 411

Query: 435 VPTQYIHAP 443
           VP +Y+H+P
Sbjct: 412 VPDKYVHSP 420


>gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
 gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
          Length = 430

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 167/448 (37%), Gaps = 40/448 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       +I ++I           + R++ F   S  ++ +
Sbjct: 16  LVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 70  GLAGRGIPLYTEVSPAG------LVRLAVRLNIRAVIADESHTFADKLTDNALWHELDKH 123

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              +    +       +          P   
Sbjct: 124 GIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQPPAGSDIFSTYRQPFPE 183

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +           +I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 184 NLPAPQPAALSDSIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRKNTSLMGAYLS 242

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 243 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDGPSDGNPEH 292

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 293 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 343

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F  QL D D A N G W+ AAS            +      + DP GTF+R  +P
Sbjct: 344 EGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAAAAHKTDPDGTFVRRHIP 396

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           EL ++P   IH P       D +  YP 
Sbjct: 397 ELAHLPAAVIHTPWRAAGSID-THGYPA 423


>gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 420

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 10/219 (4%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     + G   +L  +  RE+ R+L   +P     KP +       W  +    + W+
Sbjct: 8   NESNRDGEEGCSLFLRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWR 66

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 67  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 126

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P    
Sbjct: 127 DALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAP 186

Query: 448 DKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477
           +        +L  NYPLPIV+  +A       L++ +  
Sbjct: 187 ESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 225


>gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299]
 gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299]
          Length = 869

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/511 (22%), Positives = 186/511 (36%), Gaps = 54/511 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
            +VW R DLR+ DN+A  AA   +     +V+ +F+ +P++                 ++
Sbjct: 87  AVVWFRQDLRLDDNQAFRAAVRAANRRGGEVLCLFVWSPDEEGNDEGASWAPGEASRVWL 146

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  + +    +             +    + +       T +F + +YE   V  D 
Sbjct: 147 HHSLDALDRD--IRRRYGGGGIRFAAGEHASAVAAAAADVNATAVFASARYEPAHVEGDA 204

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--- 178
              + L    I        LL     +   ++  + +       +    +          
Sbjct: 205 RTRRALAEGGIELITLPGHLLFDRDKIRIDMERERYFFGTLMPFVHAAEKFGGEPGAPSP 264

Query: 179 -----------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                            V  +   G + PS+  R +    +A   M   G   A    ++
Sbjct: 265 APPTAPIAHDGSGGAGGVSTLASLGLIPPSDAARDWSAGLRAEWDMSESGASEAWAQFKR 324

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-- 279
                      + D+     TS LSPYL  G LSPR+ ++ L++      +    G    
Sbjct: 325 MGLAGYEATHGRCDLTHKSSTSLLSPYLRFGQLSPRRVYSELRDARFGTAVDGVEGRRLS 384

Query: 280 -SWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            ++ + L  REF    +      A        +    W         +  L+ W++G TG
Sbjct: 385 RTFWHRLYRREFAYWQLGVFPQLAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKGETG 444

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           FP++DA MR+L   GWMH   RM+ A+FLV  L + W  G  +F   L+D DLA N+  W
Sbjct: 445 FPVVDAGMRRLIRTGWMHQTERMLAATFLVDYLHIHWSHGARWFHDYLVDADLAINSMMW 504

Query: 393 QWAASTGNDSVPYFRIF----NPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWL 447
           Q A  +G D      +F     P    +  DP G  I  ++PEL  +P  ++ H P    
Sbjct: 505 QNAGKSGLDQWD---VFAGGLAPDGSARTHDPNGETIAQYVPELAGLPPGHLRHRPWEAS 561

Query: 448 DK------NDLSLNYPLPIV-DHKKACHHTL 471
            K        +   YP  IV D   A    L
Sbjct: 562 AKTLANAGVTIGDTYPARIVPDVDAARARML 592


>gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
 gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
          Length = 384

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 177/389 (45%), Gaps = 15/389 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           ++ +   LVWLR DLR+ DN AL+ A      ++I V+I   +   +         ++Y 
Sbjct: 2   SSKIPCTLVWLRRDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGRRKTGQACLWWLYH 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   LSQ  I       +   D+   L           +++NR YE  E  RD  +
Sbjct: 60  SLKSLHNQLSQWNIPLIMKSGN---DAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSI 116

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADLRS 176
           E++L    V  +++ D VL  P +I        ++Y  F           +   +   ++
Sbjct: 117 EEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLPQPRKPYDKPKFKN 176

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                 +   P     + +        +   +  GE+ A+  L+ F K  +  Y E+   
Sbjct: 177 QTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQC 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHL 294
             +  TS LSPYL  G +SP   W+ ++                  +L  L WRE+  HL
Sbjct: 237 LRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  YP +   K F    E+++   D   LQ+W+QG TG+P++DA MRQL+  G M NRLR
Sbjct: 297 LFHYPDLPQ-KCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           MI ASFL+K LLV W+ GEE+F S+L+D 
Sbjct: 356 MIVASFLIKHLLVPWQKGEEWFWSKLIDA 384


>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
          Length = 278

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 1   MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 60

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 61  DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 119

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+H +A    + +    
Sbjct: 120 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQI 179

Query: 478 KKQ 480
            +Q
Sbjct: 180 YQQ 182


>gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
 gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
          Length = 458

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 108/445 (24%), Positives = 179/445 (40%), Gaps = 39/445 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------------- 52
           MS+ ++W  +DLRI DN  LY A    D ++I ++ ++P+                    
Sbjct: 1   MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59

Query: 53  -----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                 S  ++ F +   L +  SL +           +  ++   ++    +  +T ++
Sbjct: 60  NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWV----SSKNASATIEFLVSKYPITHIY 115

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
            +    INE      L+ R         +  ++        +                 +
Sbjct: 116 RHHHAGINEATTLTKLQARYTDIRWITEYGLTLFSRHALPFSLNELPESFTK------FR 169

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFC 223
            LV+       + A+    P    N P     P  +      P          H+   F 
Sbjct: 170 KLVETIDVPKTIKAVDRLPPPVAINSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFS 229

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                 Y E R+ +     +++ SP+L+ G +SPRQ  N L   F +  +      +   
Sbjct: 230 SGAASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSL--AFYESRMGSNDSTYWIY 287

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL+WRE+++     Y +    K  I   + +  +  +   + W  G T FPI++AAM+Q
Sbjct: 288 FELLWREYFQWYSMKYGARLFSKSGI-HNKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQ 346

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           LNT G++ NR R + AS L+ DL +DWR G  YF SQL+D D+ASN G WQ+ A  G D 
Sbjct: 347 LNTTGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADP 406

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRH 427
               R FN   Q + +DP   FI  
Sbjct: 407 RG-GRHFNLDKQTQLYDPDKAFINK 430


>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
 gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
          Length = 303

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T+ LSPYL  G LS R  +++  +  +    K      S + +L+WREFY  + A  P
Sbjct: 26  PSTTVLSPYLKFGCLSAR-IFHQQLKAILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEP 84

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +         +  +I W + +  L+AW  G TG+P IDA MRQL   GW+H+  R   A 
Sbjct: 85  NFDRM-LGNVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL + W  G+  F   LLD D A N G W W +++      YFR+++P   GK+ 
Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKT 202

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472
           DPQG +IR ++PEL   P   I+ P              L ++YP  IV H+      + 
Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262

Query: 473 QYYAAKK 479
           +  AA K
Sbjct: 263 RMSAAYK 269


>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
          Length = 375

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 17/375 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +    D ++  L       + TK+ +N  Y+   + RD  ++++L   
Sbjct: 65  SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V 
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181

Query: 190 PSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +I                +   +  G  NA   L +F  +++  Y + R       TS
Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +   + +      +     K     +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +       WN D    + W+QG TG+P++DA MR+L   GWMHNR+R+I +S
Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIGEE 374
           F VK LL+ W+ G +
Sbjct: 361 FAVKMLLLPWKWGMK 375


>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 616

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 83/542 (15%), Positives = 153/542 (28%), Gaps = 84/542 (15%)

Query: 11  LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L+W R DLR+ DN AL+AA    +SD  +  V+I    +       A +  F+   L  +
Sbjct: 75  LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYIL--HRPENKKCGAVRFQFLLECLEDI 132

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL QK             ++I +L       ++T L + +      ++RD+ +    Q
Sbjct: 133 DTSLRQKQSRLLVF----CGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQ 188

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I  +      L     +                 I + +      L  P+   +   
Sbjct: 189 TLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLTPSQLPSFES 248

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S       +  + +        +  L I     K      +   D+      SQ S  
Sbjct: 249 VISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGYLTPSQHSFL 308

Query: 249 LSIGVLSPR--QCWNRLKEEFVDLLIKPKSGAFSWL-----------------NELIWRE 289
                ++    + +  ++E          S                         L +R 
Sbjct: 309 YGGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRI 368

Query: 290 FYRHLMA----------------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
            +  L                   +                           W+      
Sbjct: 369 MFIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQNPLCRKIGWRLQNEDS 428

Query: 334 PIIDAA----------MRQLNTIG-------WMHNRLRMITASFLVKDLLVD-------- 368
             +               Q            W+   +R I        L           
Sbjct: 429 DPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLTR 488

Query: 369 ------WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ- 421
                 W  G + F   L+D D A N G W W +++      +  +F+P+   +++  + 
Sbjct: 489 GDLYISWIHGAKLFQELLIDMDWAINVGNWLWVSAS-CFFHDFQNVFSPSTFPQQYYNEQ 547

Query: 422 --GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
               +I+H++PEL N+P +Y+  P              +  +YP PI+DH  A    +  
Sbjct: 548 EAAIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVASKKCILA 607

Query: 474 YY 475
             
Sbjct: 608 LK 609


>gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
 gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
          Length = 770

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 99/536 (18%), Positives = 166/536 (30%), Gaps = 107/536 (19%)

Query: 11  LVWLRNDLRITDNKALY-AACHNSDA--KVIAVFIATPEQW------------------- 48
           +   R DLR++DN  L+  A         ++ V+I                         
Sbjct: 8   IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67

Query: 49  ----RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104
                       ++ FI  ++  V+ SL            S  D     LD    +    
Sbjct: 68  SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
            ++   +  + E++ +  +    +       K  D+   +    +     Q         
Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----------------------------- 193
           +  ++ L +   +SLP P      P    +                              
Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247

Query: 194 --PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA-IQGTSQLSPYL 249
             P             F  GE      L+      +    +  R+       +++LS YL
Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307

Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + G ++ RQ    L           EE             S   EL+WR++ R       
Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----------WKQ--------------------- 328
                          + +    ++ +          WK                      
Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427

Query: 329 -----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                G TG  +IDA+MR+L   G+  NR R   A+FL K L +DWR G E++   L+D 
Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ W+PEL     + 
Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNKL 543


>gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
 gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
          Length = 793

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 99/536 (18%), Positives = 166/536 (30%), Gaps = 107/536 (19%)

Query: 11  LVWLRNDLRITDNKALY-AACHNSDA--KVIAVFIATPEQW------------------- 48
           +   R DLR++DN  L+  A         ++ V+I                         
Sbjct: 8   IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67

Query: 49  ----RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104
                       ++ FI  ++  V+ SL            S  D     LD    +    
Sbjct: 68  SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
            ++   +  + E++ +  +    +       K  D+   +    +     Q         
Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----------------------------- 193
           +  ++ L +   +SLP P      P    +                              
Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247

Query: 194 --PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA-IQGTSQLSPYL 249
             P             F  GE      L+      +    +  R+       +++LS YL
Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307

Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + G ++ RQ    L           EE             S   EL+WR++ R       
Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----------WKQ--------------------- 328
                          + +    ++ +          WK                      
Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427

Query: 329 -----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                G TG  +IDA+MR+L   G+  NR R   A+FL K L +DWR G E++   L+D 
Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ W+PEL     + 
Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNKL 543


>gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 408

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 137/364 (37%), Gaps = 25/364 (6%)

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
           + +  S  +P   +    +              +  +   +        +   P+ P++I
Sbjct: 35  RRWCRSSNIPIRELDQTGVTRCLKDRDDFSVNFKKFINQPM-WSTPSQHQCRSPMKPTDI 93

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSI 251
            +  +            GE  A  +L  F   +   Y      P    TS   LSPYL+ 
Sbjct: 94  QQIPEEHKGDRVERQYGGETKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTW 153

Query: 252 GVLSPRQCWNRLKEEFVDLLIK-------------PKSGAFSWLNELIWREFYRHLMAFY 298
           G +S R      + +  +L                      S+ + + WR  +   +   
Sbjct: 154 GHISLRYVIVTTQRKQEELREHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQ 213

Query: 299 PSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           PS+ +           +   + +    ++W +G TG+P +DA MR L   GW++ R R +
Sbjct: 214 PSLEVQDQCLAFSHLRRQPGDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAM 273

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF   +L +DW+    Y     LD +   +    Q    +G   +   R++N T QGK
Sbjct: 274 LVSFATYNLWLDWKRIASYLARLFLDYEPGIHYP--QLQMQSGVTGINAMRVYNVTKQGK 331

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP G FIR  +PEL NVP +YIH P            YP PIVD K A     ++   
Sbjct: 332 DQDPNGVFIRKHVPELRNVPVEYIHEPFGMPCVY-----YPAPIVDEKAAAKAAKDKLSG 386

Query: 477 AKKQ 480
            +KQ
Sbjct: 387 VRKQ 390


>gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M6190]
 gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           ES14902]
          Length = 433

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI18]
 gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA6140]
 gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID1]
 gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID24-1]
 gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
 gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
          Length = 432

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W+ AAS         R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           +PEL ++    +H P  +    D +  YP   V
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429


>gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica]
          Length = 251

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 15/249 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +    GT+++S +L  G +S R+ + R  E F +            + +L++R+FY  + 
Sbjct: 1   MHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGERHD--------LIRQLVFRDFYLKIY 52

Query: 296 AFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  P +  G       + +I W+ D  L  AW +G TGFP++DAA RQL  IGW HNR+R
Sbjct: 53  SHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMR 112

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTI 413
           M+T   L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYFR  FNP I
Sbjct: 113 MLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWI 172

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACH 468
           Q K+FD +G +I+ ++PEL +V    +H       +     N     YP P+V H +A  
Sbjct: 173 QSKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASK 232

Query: 469 HTLNQYYAA 477
           + +  Y  A
Sbjct: 233 NAVYLYKKA 241


>gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240013]
          Length = 433

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHAD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis WUE
           2594]
          Length = 433

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           35/02]
 gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA19]
 gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID332]
 gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 432

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W+ AAS         R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           +PEL ++    +H P  +    D +  YP   V
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429


>gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
 gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
          Length = 430

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 163/448 (36%), Gaps = 40/448 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + +I ++I   E    H     ++ F   S  ++ +
Sbjct: 16  LVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH-----RTAFYRQSAAELAQ 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  GI       S+       L    +   V  +  +      E   D  L   L   
Sbjct: 70  VLAGHGIPLYTAASSSG------LIRLAVGSSVRTVIADASCTFAEKLTDNALWHELDKH 123

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              +    +       +          P   
Sbjct: 124 SIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDRFSKHPPADSDIFATYRQPFPE 183

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I P+   G   A    + F K+  +Y V + D P+ + TS +S YL+
Sbjct: 184 NLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQADFYDVLK-DFPSRKHTSLMSAYLN 242

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LSPR                      SW + LI R+F+  L   +            
Sbjct: 243 AGCLSPRLL----------AREGIGYRLDSWTDNLIRRDFFLQLALQHADDASSDVNPEN 292

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T  +           W+QG TG PIIDA+MR L   G +H  LR + A FL   L V   
Sbjct: 293 TRYLAL---------WQQGQTGIPIIDASMRCLYKTGGLHPVLRRLCADFLCHTLRVPRH 343

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F  QL D D A N G W+ A+S            +      + DP GTF+R  +P
Sbjct: 344 EGEAWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAAAAHKTDPDGTFVRRHIP 396

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           EL ++P   IH P       D +  YP 
Sbjct: 397 ELAHLPAAVIHTPWRAAGSID-THGYPA 423


>gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri]
          Length = 520

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/486 (18%), Positives = 173/486 (35%), Gaps = 31/486 (6%)

Query: 7   MSVH-LVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M+ + L    +D LRI DN +L +   N+   +  VF       + + I   +  F+  S
Sbjct: 1   MTYNTLHIFTDDALRINDNNSLLSNLENTK-NLYTVFYY-GHIKKINHIPPHRVIFLLES 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +++ L + GI   +     F    + L     +  + ++       I   R    L 
Sbjct: 59  LKNLKERLDEYGIPLYFIDEPMF----QSLRMLISKWNINRVTTEPVVSIVGKRDQLSLR 114

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPV 179
             L    +     +S  L     +   +   + +    +      L + L +   +    
Sbjct: 115 NFLSAFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELTEFLSKFSSF 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P   +   +   +     +    +ID  F  GE  A+  L K    +       + +  +
Sbjct: 175 PDPFINKKIPSLSEFGITNETMSSIDTKFRGGETAAILQLEKLIANRCEPNNLPK-VAQL 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
                +SP +  G +S R  +NR+ +                      R     ++    
Sbjct: 234 NQYDAISPAIKFGCISVRTIYNRVSKLEPKYNEVKNQIYD------GLRNRDYCILVGGN 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +      +T  + W+        ++ G TG+P IDAA+ QL   G++HN ++ I   
Sbjct: 288 CPNIDNQGSIYTYILPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVR 347

Query: 360 FLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNPTIQGK 416
            L  D + + W  G   F    LD + A     W   + +    + +   +I NP  + K
Sbjct: 348 TLTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQI-NPIEEAK 406

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP-IVDHKKACHH 469
             D  G +IR +LPEL + P++YIH P           +  +  +YP P   D ++    
Sbjct: 407 EIDKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQ 466

Query: 470 TLNQYY 475
              +  
Sbjct: 467 CRKRLQ 472


>gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
 gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
          Length = 430

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 164/432 (37%), Gaps = 25/432 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56
           MK        LVW RNDLR+ DN+ L  A   SD+ ++ V+   P  +            
Sbjct: 1   MKNKKI----LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGI 55

Query: 57  -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  S+L ++K+  + G      Q        + +     Q  + +++++R+    
Sbjct: 56  VRASFLLESILSLRKAFQRFGGDILLVQ----GKPEDMIRDLVEQFDIAEVYHHREVGPE 111

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E      +E  L    I         L     L   ++         K   +        
Sbjct: 112 ETEISGHVEDLLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKAC 171

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYY 230
            L    I          +P   D  F+      I+     GE + L  L +  +     Y
Sbjct: 172 FLTPEHIDFVENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIY 231

Query: 231 VEQRDIPAIQGTSQ---LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           ++Q      +       LS +L+IG LSPR  + ++KE   + +    +        L+W
Sbjct: 232 LKQNTKHTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEA--EGVFGLNANFSQIFLGLLW 289

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R +   +    + +  +         +    L+ WK G T  P++D  M  LN  G
Sbjct: 290 RDYFRFMFKKHGIAFLQETDLEKDIMQAIERVDPALEKWKTGCTAHPVVDKYMYDLNATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ +  R++ A++LV  L + W  G  YF  +L+D   ASN G W   A  G D+     
Sbjct: 350 FIPHSGRLLVATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDARSKN- 408

Query: 408 IFNPTIQGKRFD 419
            F+   Q K  D
Sbjct: 409 TFDLNKQIKILD 420


>gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           MS11]
 gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
 gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
          Length = 432

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 171/453 (37%), Gaps = 44/453 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + VI + I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W+ AAS         R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           +PEL ++    +H P  +    D +  YP   V
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429


>gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID18]
 gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI2]
 gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
 gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
          Length = 432

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W+ AAS         R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           +PEL ++    +H P  +    D +  YP   V
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429


>gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240149]
          Length = 433

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI            S   L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       + P        P   
Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPNLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDSPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W W A++        R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           +PEL ++    +H P  +    D +  YP 
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           N1568]
 gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           G2136]
          Length = 433

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       R 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
          Length = 415

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/148 (45%), Positives = 94/148 (63%), Gaps = 5/148 (3%)

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P++DAAMRQL   GWMHNR R++ ASFL K L VDWRIG  +F+  L+DGD+ +N  
Sbjct: 270 TGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQL 329

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PEL +V    +H P       
Sbjct: 330 NWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAE 388

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              L+YP P+V+        L ++  A+
Sbjct: 389 RGELDYPDPLVELADG----LARFKHAR 412


>gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
 gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
          Length = 433

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
 gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
          Length = 433

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI            S   L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       + P        P   
Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   Y            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQYADDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W+ AAS         R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           +PEL ++    +H P  +    D +  YP 
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
 gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
          Length = 463

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 152/427 (35%), Gaps = 27/427 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  + WLR  LRI DN AL  A  N       V+I   +      I      F+  +L  
Sbjct: 21  SHSIHWLRKGLRIHDNPALRDAVLN-WGTFRVVYILDTKSVASSNIGLNLWRFLLQALED 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +        +       +  +T+L +    E     RD  +    
Sbjct: 80  LDDSLRKLNSRLFVIR----GQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135

Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +  +   S        I++       +      ++I+ +   D     +       
Sbjct: 136 REAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQKL 195

Query: 187 PVTPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQR- 234
             TP +      Y    ++            ++  GE  AL  L +  + K +     + 
Sbjct: 196 GHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKP 255

Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                  +   S +SPYL  G LSPR  + RL + +  +         S   +L+WREF+
Sbjct: 256 KVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG--GPPPTSLYGQLLWREFF 313

Query: 292 RHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
             +    P+       P   + +     + +  LQ W    TGFP IDA M QL   GW+
Sbjct: 314 FVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWI 373

Query: 350 HNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H   R+  ASFL +    + W  G + F   LLD D +SN G W W + +   S  +F  
Sbjct: 374 HYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYS-AFSQQFFNP 432

Query: 409 FNPTIQG 415
             P    
Sbjct: 433 PCPVEFS 439


>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
          Length = 266

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 2   MEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 61

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 62  DLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGD 120

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +++ +LP+L   P++YI+ P +  +      K  + ++YP P+V+H +     + +    
Sbjct: 121 YVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQI 180

Query: 478 KKQ 480
            +Q
Sbjct: 181 YQQ 183


>gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 433

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 166/448 (37%), Gaps = 40/448 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA     + +I +             + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-SPIIGI-----RIDDAETGNPRRTAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  VLAGRGIPLYTAASPAG------LVRLAVRLNIRTVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDIFSTYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLPAPPPAAFSDGIFLPQNGGETAAWRQWRRFIEQADSYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WTDNIIRRDFFLQLALQHADDAPADGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDA+MR L+  G +H  L+ ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDASMRCLHKTGSLHPALKRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F  QL D D A N G W+ A+S            +      + DP GTF+R  +P
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAAAAHKTDPDGTFVRRHIP 399

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           EL ++P   IH P       D +  YP 
Sbjct: 400 ELAHLPAAVIHTPWRAAGSID-THGYPA 426


>gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           OX99.30304]
          Length = 433

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 44/450 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI            S   L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       + P   +    P   
Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFVAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W W A++        R   P       + DP GTF+R  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKTDPDGTFVRRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           +PEL ++    +H P  +    D +  YP 
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           961-5945]
          Length = 433

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI F              L    ++     +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPFYTAASPAG------LVRLAVRLNTRAVIADESHTFADKLTD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       +    
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPQPAVLSDGIFLPRNGGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR    +  E  ++           W + +I R+F+  L   +  
Sbjct: 236 NTSLMGAYLSAGCISPRLLARKSLERRLNA----------WTDNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
 gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
          Length = 429

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 112/468 (23%), Positives = 176/468 (37%), Gaps = 49/468 (10%)

Query: 1   MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55
           M + TA +V      LVW R +LRI DN AL AA     + +I ++I           + 
Sbjct: 1   MPSETAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDD-----AETGNP 54

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           R++ F   S  ++ + L+ +GI                L    ++  +  +  +  +   
Sbjct: 55  RRTAFYRQSAAELAQVLAGRGIPLYTAASPAG------LVRLAVRLNIRTVIADASHTFA 108

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           +   D  L   L    I  +F +   +   + L              + +  +       
Sbjct: 109 DKLADNALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPP 168

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +          P   +            I      GE  A    R+F ++   Y V + D
Sbjct: 169 ADSDLFAAYRQPFPENLPAPQPAAFSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-D 227

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L 
Sbjct: 228 FPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLA 277

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +            T ++           W+QG TG PIIDAAMR L+  G +H  L+ 
Sbjct: 278 LQHADDAPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALKR 328

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TI 413
           ++A F    L +  R GE +F  QL D D A N G W+ AAS         R   P    
Sbjct: 329 LSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAA 379

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
              R DP GTFI+  +PEL ++    +H P  +    D +  YP   V
Sbjct: 380 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPARPV 426


>gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria
           meningitidis H44/76]
 gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           CU385]
 gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           H44/76]
          Length = 433

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M04-240196]
          Length = 433

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 468

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 164/446 (36%), Gaps = 33/446 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ------WRQHGISARQSHFIYAS 64
           + W R+D+R+ DN A   AC      V+AV    P        W   G+S  +  +  A+
Sbjct: 24  IYWFRSDMRLQDNPAWTRACAMG-RPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAAT 81

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD----------SYCLQQRVTKLFYNRQYEI 114
           + ++++ L   G+     +  + +  +   +                   +L   R   I
Sbjct: 82  VQELRRELDALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERAQLSSLRASGI 141

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                 +    + +      +    V     + +  A   ++   P    +    +  D 
Sbjct: 142 VVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDA 201

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCK 224
            S     +           PR                  +D +         ++      
Sbjct: 202 VSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLES 261

Query: 225 EKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            +V  Y   R+    +  +S+ SP+L++G +S  +    LK    +       G++    
Sbjct: 262 GRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGTTD--GSYWLWF 319

Query: 284 ELIWREFYRHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           EL+WR+++R L   +   +   K  +   +             W QG TG  ++DA MR+
Sbjct: 320 ELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMRE 379

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++ NR+R + ASFL+ +L  DWR G  +F SQLLD D+ SN G W + A  G D 
Sbjct: 380 LACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDP 439

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R FN   Q    DP G +   W
Sbjct: 440 RG-GRRFNVAKQTADHDPDGAYRALW 464


>gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153]
          Length = 433

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 110/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       VI ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI            S   L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       + P        P   
Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDDPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428
            GE +F  QL D D A N G W W A++        R   P       R DP GTFI+  
Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRTDPDGTFIKRH 397

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           +PEL ++    +H P  +    D +  YP 
Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640]
 gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06]
          Length = 433

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/448 (23%), Positives = 166/448 (37%), Gaps = 40/448 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LRI DN AL AA       +I ++I           + R++ F   S  ++ +
Sbjct: 19  LVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETGNPRRTAFYRQSAAELAQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI                L    ++  +  +  +  +   +   D  L   L   
Sbjct: 73  VLAGRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +F +   +   + L              + +  +       +          P   
Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +            I      GE  A    R+F ++   Y V + D P+ + TS +  YLS
Sbjct: 187 NLSTPPPAAFSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRKNTSLMGAYLS 245

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR       E  ++           W + +I R+F+  L   +            
Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDGPSDGNPEH 295

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T ++           W+QG TG PIIDAAMR L+  G +H  L  ++A F    L +  R
Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALIRLSADFFCHVLNLPRR 346

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F  QL D D A N G W+ AAS            +      + DP GTF+R  +P
Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAAAAHKTDPDGTFVRRHIP 399

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           EL ++P   IH P       D +  YP 
Sbjct: 400 ELAHLPAAVIHTPWRAAGSID-THGYPA 426


>gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M13399]
          Length = 433

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans]
          Length = 989

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 106/566 (18%), Positives = 177/566 (31%), Gaps = 133/566 (23%)

Query: 2   KATTAMSVH-----LVWLRNDLRITDNKALYAACHNSD---------------------- 34
           +  + M+V      L  LR D+R++DN   +AA   +                       
Sbjct: 296 EKHSTMAVEKPRILLYILRRDVRLSDNPVFHAASQQTRLNTAAAAKAANPSPQSDRRGRD 355

Query: 35  ------------AKVIAVFIATPEQ-----------------------WRQHGISARQSH 59
                         ++ V++    Q                        +       +  
Sbjct: 356 DSLTSEHASTDFTHLLPVYVFPANQVEISGFLSSPSDKNPYPEARSQVAKIWRTGPHRIR 415

Query: 60  FIYASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           F+      +++ L     G   +    +  D     L+ Y  Q+             ++ 
Sbjct: 416 FMAEGAWDLKRKLESLKCGSGLEMRVGAIPDVVSNILEWYSKQEDSKGKVTGVWMTDDDG 475

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY------TPFRKALIQNLVQ 171
             +K  EK L+        D  V       ++     YK            +  ++ L  
Sbjct: 476 TEEKSDEKTLKSLTEKHRVDFKVYRDEKYYVDDRDLSYKNISELPNVYTSYRKALEPLRD 535

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI--------------------DPMFPIG 211
                 P P      P       R F  P                         P +P  
Sbjct: 536 RPRNEFPAPTQLPPLPEHIPPQQRPFTIPDNLDALLQALSSPLEKDPTYTLSEPPKYPTD 595

Query: 212 EQNALHI-----------LRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259
            Q+A                      +  Y E R+ +  +  +++LS +L+ G L+ R  
Sbjct: 596 VQSAHPFAGGETSALNRVSHLISSGAMSSYKETRNGMLGLDFSTKLSAFLAQGHLTARHV 655

Query: 260 WNRLKEEFVDLL---------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
              + +                   +G  +   EL+WR++ R  M  +         I  
Sbjct: 656 HWAMFDFEEGRGPGKDVKGYGQGENAGTAAVRFELLWRDYMRLCMRKFGDRMFHLYGIQN 715

Query: 311 TEKIEWNKDSHLLQ---------------------AWKQGYTGFPIIDAAMRQLNTIGWM 349
            +  + N+                            ++ G TG  +IDA+ R+L   G+ 
Sbjct: 716 QDAKDGNRPQMKKWKKLDGSGGAGDDPKQTLEAFTRFRSGRTGVGLIDASNRELFVTGYT 775

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R   ASFL   L +DWRIG E++   L D D ASN G WQ+ A  GND     R+F
Sbjct: 776 SNRARQNVASFLASHLNIDWRIGAEWYECFLTDYDCASNWGNWQYVAGVGNDPRQ-GRVF 834

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNV 435
           NP  Q   +DP+G +I+ W+PEL  +
Sbjct: 835 NPVKQAFDYDPKGEYIKAWVPELRGI 860


>gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240355]
          Length = 433

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       R 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
 gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1
 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
          Length = 499

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFYRHLMAF 297
             S +S  L  G LS R  +  + + F  +         G      +LIWRE++  +   
Sbjct: 215 PPSSMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVH 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P   + +          +      L  WK+G TGFP+IDAAMRQL   GW+H+ LR IT
Sbjct: 275 NPHYAVMELNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNIT 334

Query: 358 ASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTIQG 415
           A+FL +  L + W  G ++F+  LLD D +   G W W +S+  + +       +P    
Sbjct: 335 ATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALA 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469
           +R DP+G +++ +LPEL   P  Y+H P     +        +  +YP P+V+  +    
Sbjct: 395 RRLDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKC 454

Query: 470 TLNQYYAAKKQ 480
             N+  A +++
Sbjct: 455 NANKMNAIRQK 465


>gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           NZ-05/33]
          Length = 433

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       R 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710]
          Length = 433

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W W A++        R   P       R 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL
           J2-003]
          Length = 127

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 6/122 (4%)

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNP  Q ++FDP G F
Sbjct: 1   MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++ EL N+P ++IH P    +         L  +YP PI+DHK+     + +Y  +K
Sbjct: 61  IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120

Query: 479 KQ 480
           + 
Sbjct: 121 EH 122


>gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M0579]
          Length = 433

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 172/458 (37%), Gaps = 40/458 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +S R       E  ++           W + +I R+F+  L   +  
Sbjct: 236 NTSLMGAYLSAGCISSRLLARESLERRLNA----------WADNIIRRDFFLQLALQHAD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGGLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +  R GE +F  QL D D+A N G W+ AAS            +      R DP
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAASRHTYP-------DIAAASYRTDP 389

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
            GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 390 DGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 606

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 147/396 (37%), Gaps = 24/396 (6%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
               IS +   F+   L  +  +L +        +                + ++++L +
Sbjct: 10  GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIR----GQPANVFPRLFKEWKISRLTF 65

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ 167
               E     RD  ++K  +   +      S        I+        +     + LI 
Sbjct: 66  EYDSEPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 125

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNAL 216
            +   ++    +    +   VTP +      +   +++            ++P GE  AL
Sbjct: 126 RMDPPEMPVEMLSGNLMGRCVTPISEDHGEKFGVPSLEELGFDIEGLPSAVWPGGETEAL 185

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             + +  + K +    +R            + LSPYL  G LS R  + +L + +  +  
Sbjct: 186 TRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKK 245

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                  S   +L+WREF+       P     +   P   +I W+++   L  W +  TG
Sbjct: 246 NTSPPL-SLYGQLLWREFFYTAATNNPRFDKME-GNPICVRIPWDRNMEALAKWAEAKTG 303

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G 
Sbjct: 304 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGS 363

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           W W + +      +F  + P   G+R DP G FI  
Sbjct: 364 WMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDFISR 398


>gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
 gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
          Length = 582

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 153/481 (31%), Gaps = 78/481 (16%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA-----------------------------KVIA 39
           + L  LR D+R++DN A +AA   +                                 + 
Sbjct: 7   IVLYILRRDIRLSDNPAFHAAAQQTQRANSRKSSPNGERRGRDDSLTSEHGGAPFTHFLP 66

Query: 40  VFIATPEQWRQHG-----------------------ISARQSHFIYASLLQVQKSLSQKG 76
           V++  P+Q    G                           ++ FI   +  +++ L   G
Sbjct: 67  VYVFPPKQIETSGFLASPSDKSPYAEARSQFAKVWRTGPHRAKFIGQGVWGLKQQLENLG 126

Query: 77  --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
                +       +   ++++SY L+    +   ++              +        +
Sbjct: 127 CGSGLEMRVGMVDEVVRDFINSYSLKDGEDE---SKPKITGVWMTSDDGTEERDEVKAVR 183

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                  +P     +    +           I +L+++   S               N  
Sbjct: 184 KVAAENDIPFKLWADEKFYIDDGGEEHGLDRIAHLIRSGAMSSYK---------ATRNGM 234

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
              D+  +    +                 E+     +          +      + G  
Sbjct: 235 LGLDFSTKLSAYLAQGHITARQVHWAMKDFEEGRGEGKGI--------AGYGKGENEGTA 286

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           + R          + +          +  +   +      +       + K   P     
Sbjct: 287 AVRFELLWRDYMRLCMRKFGHKMFALYGIQPHRKGQGDEPIYKKRWRMVHK---PNGAGD 343

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           +  K+    Q ++ G TG  +IDA+ R+L   G+  NR R   ASFL   L +DWRIG E
Sbjct: 344 DHKKNMETFQRFRSGRTGVGLIDASNRELFCTGYTSNRARQNVASFLSSHLDIDWRIGAE 403

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           ++   L+D D+ASN G WQ+ A  GND     RIFNP  Q   +D +G +I+ W+PEL  
Sbjct: 404 WYEMLLIDYDVASNWGNWQYVAGVGNDPRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQ 462

Query: 435 V 435
           +
Sbjct: 463 L 463


>gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis 8013]
          Length = 433

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 172/460 (37%), Gaps = 44/460 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       +I ++I           + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI                L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   L    I  +F +   +   + L              + +  +       + P  
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P   +            I      GE  A    R+F ++   Y V + D P+ +
Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS +  YLS G +SPR       E  ++           W + +I R+F+  L   +  
Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T ++           W+QG TG PIIDAAMR L+  G +H  LR ++A F
Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418
               L +  R GE +F  QL D D A N G W+ AAS         R   P       + 
Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
 gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
          Length = 881

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 34/294 (11%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCW 260
           + +D  F  G+        K     V  Y + R+       ++++SP+L+ G +SPRQ W
Sbjct: 338 ERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPFLAYGSVSPRQIW 397

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---N 317
             L +   +         +    EL+WR+++  +   +  +                   
Sbjct: 398 EALDDH--ERKFGEDQNTYWVRFELLWRDYFFFVAEKFGHLLYDLGGFERATDPRQAAKK 455

Query: 318 KDSHLLQAW--------------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +    + W               +G TG P IDA + +L   G+M NR R   ASFL K
Sbjct: 456 MEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILELRESGFMSNRGRQNVASFLSK 515

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL  DWRIG E+F S L+D D  SN G WQ+ A  GND     R FN   Q K +D  G 
Sbjct: 516 DLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR-ASRQFNTVKQAKDYDSHGD 574

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLS------------LNYPL-PIVDHK 464
           +++ W+P L N+   Y+H P                        YP  P+ +H+
Sbjct: 575 YVKLWIPALRNLHADYVHTPWLLTADERRRYGLKTTKMDVTIDGYPAQPLFEHE 628



 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 49/158 (31%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV-------------------------IAVFI 42
           SV +  LR DLRI DN   Y A       V                         + VF+
Sbjct: 27  SVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVFV 86

Query: 43  ATPE--------------------QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
                                   ++        ++ F+  S+  V+  L   G      
Sbjct: 87  FDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFIR 146

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
               F    + + +     +         +   E+   
Sbjct: 147 ----FGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYP 180


>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
          Length = 244

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G   F   LLD D
Sbjct: 1   WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W + +      +F  + P   G+R DP G +++ +LP+L   P++YI+ P 
Sbjct: 61  FSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119

Query: 445 SWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 161


>gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
 gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
          Length = 413

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 49/450 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 9   LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I              E L           +  +  Y   E+R+D LL   L   
Sbjct: 65  RLAAHHIPLYAVASD------EDLLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +   +   + L       Y  +T +++A +Q   +       +P       V 
Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELP-------VQ 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                  F     A+ P +  G + A        K+ + +Y   ++ PA + TS L+ YL
Sbjct: 172 TGQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL++LI+R++   L               
Sbjct: 232 SAGCISPRLLAAESLANR----------HFEWLDKLIFRDYCYQLAYHR----------- 270

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                E    + + + W+ G TG P+IDA++R L   G +H  L+ + A +    L +D 
Sbjct: 271 --RLPETTDAAPVREYWRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALNLDP 328

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +  S     D A N   W  AA          R         + DP G++IR +L
Sbjct: 329 NQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYL 381

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           PEL ++P+  IH P +  D  D +  YP P
Sbjct: 382 PELAHLPSTLIHTPWAAADDID-THGYPFP 410


>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
 gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
          Length = 684

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 114/271 (42%), Gaps = 29/271 (10%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFY 298
             T+ LSPYL  G LS R+ W   +E         K+G   +   +L++R+ Y       
Sbjct: 305 PSTTLLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRDMYACAEYAI 364

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ--------------------AWKQGYTGFPIIDA 338
                          ++W   +H  +                    A+K G TGFP IDA
Sbjct: 365 GDAFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDA 424

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GWMH+  R   A+FL +    + W  G E F   L+D D  SN G W W + 
Sbjct: 425 LMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSC 484

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451
           +   +  YFR++       ++D  G  +R + PEL   P +YI+ P +            
Sbjct: 485 SAFFTQ-YFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGCI 543

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           +  +YPLP++D K+A    + +     + +L
Sbjct: 544 IGKDYPLPMLDEKEAKAENMARMKICYQANL 574



 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS H   L W R DLR+ D+ AL AA     A +  V+   P    +H +   +  F+  
Sbjct: 1   MSKHVRVLYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLE 60

Query: 64  SLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           S++ + K++  +Q        +     +  E L     +  +T L + 
Sbjct: 61  SMIALSKNITSTQSNSQLLVVR----GEPTELLPELWKRWSITHLVFE 104


>gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 389

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 7/228 (3%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYP 299
            S+LSPY + G +S R+          ++    + GA   S++  L W   +   +   P
Sbjct: 80  CSRLSPYFAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEP 139

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +PF    E +    D   L AW +G TG+P IDAAMR L   GW++ R+R +  S
Sbjct: 140 E-AEWRPFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMS 198

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F   DL + W+           D +   +    Q    +G   +   R+++P  QG   D
Sbjct: 199 FASHDLFLPWQESGLVLARLFTDYEPGIHWP--QCQMQSGETGINTVRVYSPVKQGFDQD 256

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSLNYPLPIVDHKK 465
           P G  IR  +PEL  V    +H P      ++  L   YP  IV H++
Sbjct: 257 PAGRLIRLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 304


>gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
 gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
          Length = 411

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 165/450 (36%), Gaps = 49/450 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 7   LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---SQRPSENHNPRQSLFHYQAAQELHT 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I              E L           +  +  Y   E+R+D  L       
Sbjct: 63  RLATHHIPLYVVASD------EDLLPLAAAFNAHTVITDEAYTEAEIRQDNHLWHNFDRA 116

Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I     +   +     L       Y  +  +++A +Q           +P       V 
Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELP-------VQ 169

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                  F     A+ P +  G + A        K+ + +Y   ++ PA + TS L+ YL
Sbjct: 170 TRQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYL 229

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL++LI+R++   L               
Sbjct: 230 SAGCISPRLLAAEGLANR----------HFEWLDKLIFRDYCYQLAYHR----------- 268

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                E    + + + W+ G TG PIIDA++R L   G +H  L+ + A +    L  D 
Sbjct: 269 --RLPETTDAAPVREYWRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDP 326

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +  S     D A N   W  AA          R         + DP G++IR ++
Sbjct: 327 NQGIAWAASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYV 379

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           PEL ++P+  IH P +  D  D +  YP P
Sbjct: 380 PELAHLPSTLIHTPWAAADDID-THGYPFP 408


>gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 675

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/541 (17%), Positives = 174/541 (32%), Gaps = 117/541 (21%)

Query: 11  LVWLRNDLRITDNKALY-AACHNSD----------------------------AKVIAVF 41
           L  LR D+R++DN   + AA   +                               ++ V+
Sbjct: 10  LYVLRRDVRLSDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGGASFTHLLPVY 69

Query: 42  IATPEQW----------------------RQHGISARQSHFIYASLLQVQKSLSQK--GI 77
           + +  Q                       +       +  FI   +  ++  L+    G 
Sbjct: 70  VWSANQIEVSGFLPASTPSPYPEARSAVAKVWRTGPHRVQFIADGVWDLKNKLADLDCGS 129

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
             +       +   + LD Y   +   ++      E +     +   +  +         
Sbjct: 130 GLEQRVGKITEVVSDILDWYAKDENEGEISGVWMTEDDATEEKREEAELAKITKQHGVDF 189

Query: 138 DSVLLPPGSILNHALQMYKV-----YTPFRKALIQNLVQADLRSLPVP------------ 180
                    I +  L    +          + + + L      +LP P            
Sbjct: 190 KVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKVFEPLRDRPRETLPTPSLLPPLPPSIPP 249

Query: 181 -------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                              +     P     +P  +    Q+  P           I   
Sbjct: 250 QKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRIAHL 309

Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLL 271
                +  Y + R+ +  +  +++LS YL+ G ++ RQ    +          E+     
Sbjct: 310 VASGAMSSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMLDFEEGRGPGEKKHAYG 369

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCM-----------------GKPFIPWTEKI 314
                G  +   EL+WR++ R  M  +                       K      +  
Sbjct: 370 QGENEGTAAVRFELLWRDYMRLCMRKFGHKMFGLYGIQDRGAKGSQHKKWKKLYKGEDGE 429

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           +  K   + + ++ G TG  +IDA+ R+L   G+  NR R   ASFL   L +DWR+G E
Sbjct: 430 DPQKTMEVFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAE 489

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           ++   L+D D ASN G WQ+ A  GND     R+FNP  Q   +D +G +I+ W+PEL +
Sbjct: 490 WYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEYIKAWVPELRD 548

Query: 435 V 435
           +
Sbjct: 549 I 549


>gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus]
          Length = 243

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
           +G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D +
Sbjct: 1   EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P + 
Sbjct: 61  VNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119

Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +      K  + ++YP PIV+H +     + +     +Q
Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 159


>gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 120

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 83/115 (72%)

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 1   MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL  VP   IH P  W D+    L+YPLP+VDHK A   TL  +  AK+ 
Sbjct: 61  RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKRD 115


>gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 456

 Score =  158 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 173/451 (38%), Gaps = 33/451 (7%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              +LR+  N  L  A         AV+            + RQ +F+  +L ++   L+
Sbjct: 36  FTRNLRLAANP-LLHAVQ-YGIPAAAVYFL------PAHSNPRQMYFLSQTLAELSDGLA 87

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
           + GI     +        E L++   +    +L   +      +R       R+Q+    
Sbjct: 88  EYGIPLHVFE----GSPTEHLNALMARYPTARLITAQH-----IRLPDDPSCRVQYVQEE 138

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
                       + L   L +Y+    + +   ++  + D         R+   + P   
Sbjct: 139 ILPLPVRRTTLDTSLPPDLVVYR--DAWLRKAAKSAEETDSTPDKAAVRRVQQHLPPELR 196

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
                    A       GE  A    R F  +  YY +  RD PA +GTSQLS  L  G+
Sbjct: 197 DAPPPPSVSAQTLPQTGGETAAWTAWRAFTPKLPYYGLM-RDFPAQKGTSQLSAALRFGL 255

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L  R+    ++    +   K     F        R  +   +  +    + +   P    
Sbjct: 256 LPVRRLARTVQVMGGESAEKWLHSVFYGDYC-RRRMPFAAGLWAWEDGALVEIRPPAAAP 314

Query: 314 IEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                      A   W++G TG P+IDAAMR L+  GWMH RLR + A+F V  L +   
Sbjct: 315 AMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHPRLRSLCAAFAVSALGIPQA 374

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE  F + L D D ++N  GWQ AA+         R+ NP  + +  DP G FIR  LP
Sbjct: 375 AGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNPFAESQNLDPGGRFIRSHLP 426

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           E+ ++P   IHAPH       L+  YP PIV
Sbjct: 427 EIAHLPDNIIHAPHRAGSGVSLN-GYPAPIV 456


>gi|330951090|gb|EGH51350.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 108

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G FI+ WLPEL ++  + I
Sbjct: 1   IDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQI 60

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           H P    D    + +YP PIVD  K+    L  + A 
Sbjct: 61  HDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 96


>gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 144

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/141 (43%), Positives = 82/141 (58%), Gaps = 7/141 (4%)

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+MHNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ 
Sbjct: 5   WQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAA 64

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
           PYFRIFNP +Q ++F+    +IR ++PEL  +P + I  P    +         L  NYP
Sbjct: 65  PYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYP 123

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIVD KK+    L  +   K
Sbjct: 124 KPIVDLKKSRDRALQLHNQIK 144


>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 470

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 181/464 (39%), Gaps = 46/464 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53
           MK      + L    +DLRI DN+ L+ A  + D K+I V I  P       +  ++   
Sbjct: 1   MKK-----IGLYLFTSDLRINDNQLLHCAAQSVD-KLIFV-IVEPTLVRFSADLAQEQSY 53

Query: 54  SARQSHFIYASLL--QVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYN 109
            A +  F+  S+   ++  +L + G        ++   D + + L      Q VT  F N
Sbjct: 54  GAHRQTFVSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFAN 113

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
                +E +    L+ R    +I      S L     +     ++   +T FRK +    
Sbjct: 114 AHCGYDERQLIHSLQSR-HPDLITCLPHHSTLFDSHEMPFELSKVPSSFTKFRKLVEHLD 172

Query: 170 VQ-----ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
           V            PV         T   I    +      +      +    H+   F  
Sbjct: 173 VNGGETVIAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFAH 232

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +    Y + R+    I+ +++ SP+L++G +SP+     LK+  ++         +    
Sbjct: 233 DYALNYKQTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIEHGSND--STYWIYF 290

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQ 342
           EL+WRE++            G            +  S+L  A WK G T +PI+DA MRQ
Sbjct: 291 ELLWREYFYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLNFAKWKSGNTNYPIVDACMRQ 350

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           LN  G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A   N  
Sbjct: 351 LNETGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNSQ 410

Query: 403 VPY------------------FRIFNPTIQGKRFDPQGTFIRHW 428
           V                     R F+   Q   +DP   FI  W
Sbjct: 411 VNTQDNKQNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454


>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
 gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
          Length = 416

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 165/422 (39%), Gaps = 18/422 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS ++ W RN+LRI DN  L     +S   +  V+I         G    ++ F+  +L 
Sbjct: 1   MSHNIFWFRNNLRIHDNYPLVQCIKDS-TSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++ +LS  G      +     +  +   S   Q ++ K++  +     E   +  +   
Sbjct: 60  QLKINLSDLGHELYIIE----GEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSIT-- 113

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                +   +D ++L       +         T  +K  ++ +       L +P      
Sbjct: 114 --QTDVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVELKPITATLYEGLTLPKPANLS 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YVEQRDIPA-IQGT 242
            +    +P F      ++D +                         Y + R+       +
Sbjct: 172 NINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQTRNELMGNDFS 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ S +L+ G++S RQ +  LK    +         +  L EL+WR+++R L   Y    
Sbjct: 232 TKFSVWLAHGLISARQIFTSLKNY--EESNGANESTYWILFELLWRDYFRLLHFKYNRKL 289

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +   E  E       +   ++  T    I+A +R+L   G++ NR+R I ASF++
Sbjct: 290 YFQFGLKNKEINET--SQDNISNLEEANTESSFINAGIRELQNSGFLSNRMRQILASFII 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            ++ +DWRIG ++F   L+D D+ SN G W + A  G D     R FN   Q   +D   
Sbjct: 348 FEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRG-GRRFNVEKQKNTYDIDN 406

Query: 423 TF 424
            +
Sbjct: 407 QY 408


>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 422

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 159/400 (39%), Gaps = 20/400 (5%)

Query: 36  KVIAVFIA---TP---EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
           ++I ++     TP      ++      +  F+ +SL ++ +SL+  G      + +    
Sbjct: 3   ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLDSSLSELNQSLNHLGQRLWAVELT---- 58

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
             + +     +  VT ++ +     +E +      +   H  I +    ++L       +
Sbjct: 59  PDQAIKYAVNRFGVTHIYADAFPGSDEQQALDRAVEGASHVKIKQQAIRTLLREEQLPFD 118

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
            +               + +   D+         L       N+P    Y F A      
Sbjct: 119 LSNL-----PTTFTQFRKQVEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFDAKAAFHG 173

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +   H  + F       Y + R+    +  +++ SP+L+ G +SP+  +  LK    
Sbjct: 174 GESRGLEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRYEA 233

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +         +    EL+WRE++      +         I        +  +H  Q WK+
Sbjct: 234 ENGAND--STYWIYFELLWREYFYWYARRHKRQLFRFGGI-QNRAPLTSFYAHRFQQWKK 290

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T FPI++A M QLN  G+M NR R + AS LV +L +DWR G  YF SQL+D D+ASN
Sbjct: 291 GETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASN 350

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            G WQ+ A  G D     R FN   Q + +DP   FI  W
Sbjct: 351 WGNWQYLAGVGADPRG-SRQFNLEKQTEMYDPHMEFIDRW 389


>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
          Length = 571

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 165/479 (34%), Gaps = 39/479 (8%)

Query: 9   VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           V L W     LR+ DN  L AA  N  A V   +        +   S+ +  FI ++L  
Sbjct: 73  VTLFWFTEAALRLNDNAGLKAAMKNCKA-VRFCYFLDERFINE---SSPRWKFIKSALSD 128

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNRQYEINEVRRDKLLEK 125
           + + L   G               E L        V +     +        R   ++  
Sbjct: 129 LDEQLKNLGSRLHVLS----GQPSERLPQLFADWNVVRLGFSAHPGCTDMRRRDRAIVSL 184

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L+H V     D    L     +  A       T      + + +    + + VP   + 
Sbjct: 185 ALRHGVEVVYRDAPQCLYSPRDIIKASGGMPPLTFPSFVGVASQLPEPEKPINVPESDIV 244

Query: 186 GPVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 +    P+      + +D  +  GE  A        +  +      R+  +    
Sbjct: 245 MCSVSEDHDEAPQNEILGKKDLDFPWAGGETEARARFMSALRHWLI----NRETQSTPDL 300

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
             ++PY+  G LS RQ ++ +   + ++  +              +  +  L   +    
Sbjct: 301 RAVTPYIVQGCLSVRQVYHDVNRVYEEIQGEKA----------TLKLHFAALHRDFLYNL 350

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              P       + ++ D   ++ W +G TGFP +DA MRQ  T GW+   LR     FL 
Sbjct: 351 AVVPNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRTEGWVAPTLRQAVLWFLT 410

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           + +L         FMS+    DL    G   WA+ TG           P     + DP  
Sbjct: 411 RGVLWQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCENDVAHKCP-----KVDPN- 464

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            +IR W+PE+ N+  + IH P +          Y   IV HK +   + ++Y+   K+S
Sbjct: 465 -YIRQWVPEVANLTDEQIHEPWT----TQTPTEYVSLIVQHKISHRRSESKYHETLKRS 518


>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 662

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 29/196 (14%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
           +I W+++   L  W +G TGFP IDA M QL   GW+H++ R  +A FL +  L      
Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511

Query: 373 E----------------------EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
                                  + F   LLD D + N G W W + +      +F+ + 
Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFKCYC 570

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464
           P   G+R DP G +IR ++P L + P +YI+ P +  +         + ++YP P+++H 
Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630

Query: 465 KACHHTLNQYYAAKKQ 480
           +     + +     +Q
Sbjct: 631 EGSRLNIERMKQVYQQ 646



 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 7  MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
          M V+ + W R  LR+ DN AL  A   +D+ +  V++  P       +   +  F+  +L
Sbjct: 1  MVVNSVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEAL 59

Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
            +  SL +        +        +       
Sbjct: 60 EDLDCSLKKLNSRLFVVR----GQPTDVFPRLLK 89


>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
 gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
          Length = 678

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 167/518 (32%), Gaps = 75/518 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGI--------------- 53
           +  LR DLR TDN  L+    +      ++ ++I  P Q    G                
Sbjct: 8   VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67

Query: 54  -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105
                     ++ F    +  V+K+    G           D     + S     + +  
Sbjct: 68  VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY------- 158
           ++   +    E+     +        I                   L+            
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFKLWHDEKYFIDEKTQEPLRERPRPPLPRPQA 187

Query: 159 -----TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
                 P      Q   +          + L     P                 F  GE 
Sbjct: 188 GSLPSFPSWIPPQQAPFRIPDDYDEFERLLLEPVKAPIISDPPQFPEGAKSAHPFKGGET 247

Query: 214 NALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKE------ 265
            A   L    K   +  Y E R+     + +++LS +L++G ++ R     L +      
Sbjct: 248 PAWDRLYHLIKSGAMTTYQETRNGLLGTEYSTKLSAFLAMGTITARSIHAELVKFEDGSE 307

Query: 266 ----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI------------- 308
                          G  +   EL+WR++ R     + +                     
Sbjct: 308 ESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGASGNYTKKWLT 367

Query: 309 ------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                    +     +   ++  W +G TG  ++DA+ R+L   G+  NR R   AS+L 
Sbjct: 368 DREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNRARQNVASYLT 427

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L +DWR+G EY+   L+D D  SN G WQ+ AS GND  P  R FN   Q   +D  G
Sbjct: 428 KSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQASCGND--PRSRSFNQVKQAFDYDQDG 485

Query: 423 TFIRHWLPELNNVPT-QYIHA----PHSWLDKNDLSLN 455
            F R W+ E+ ++   +++      P   L+K+ LS N
Sbjct: 486 RFTRTWVNEVKSIDRLEHVFQICTCPKQELEKHGLSDN 523


>gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 396

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 154/401 (38%), Gaps = 20/401 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65
           + W RNDLR+ DN+AL AA  ++D ++I V++  P Q+ +  +  R+     + F+  S+
Sbjct: 6   IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++++++ QKG                 +           ++ +++    E R +  L K
Sbjct: 65  AELRENIRQKGGDLIIRT----GAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSK 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L+   +         +   + L   +          + L+ N ++   +     +I L 
Sbjct: 121 NLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFPTPASITLP 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---- 240
             V    IP   +      + P    G             ++      ++DI        
Sbjct: 181 ADVEAGAIPGLPELGIDPNEIPAGTTGPLAGGEARALAVLKEYVEEYVKKDIAYPSAEPL 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LS +LS+G +S    +  +K      +++        +  L+ REF    +  +  
Sbjct: 241 TDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVE-----DPIITNLLRREFLHWTLLRFGP 295

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  +       W  D+   + W  G TG   I+  +R+L   G++    R   A +
Sbjct: 296 RMFKPSGVKHHFNRRWKNDNAAFEKWINGQTGDQSINDIIRRLTATGFITAAERESAARY 355

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           LV DL ++W  G  YF S L+D + + N G W   A  G D
Sbjct: 356 LVDDLDINWTWGAMYFESLLMDYEASVNWGRWNHIAGVGED 396


>gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
 gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
          Length = 428

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 155/449 (34%), Gaps = 47/449 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAV-ASGLPITCVWV---SQRPSENHNPRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I                 D   L        +    +      +   +  L H 
Sbjct: 80  RLAAHHIPLYVVAS----------DEDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHN 129

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                         G +    L           A  +               +L  PV  
Sbjct: 130 FDQAGIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKL--PVQI 187

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                 F     A+ P +    + A        K+ + +Y   ++ PA + TS L+ YLS
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYLS 247

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR                     F WL++LI+R++   L                
Sbjct: 248 AGCISPRLLAAESLANR----------HFEWLDKLIFRDYCYQLAYHR------------ 285

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
               E    + + + W+ G TG PIIDA++R L   G +H  L+ + A +    L  D  
Sbjct: 286 -RLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDPN 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G  +  S     D A N   W  AA          R         + DP G++IR +LP
Sbjct: 345 QGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYLP 397

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           EL ++P+  IH P +  D  D +  YP P
Sbjct: 398 ELAHLPSTLIHTPWAAADDID-THGYPFP 425


>gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 424

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 191/418 (45%), Gaps = 25/418 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LV L    R+  N       +++ A +   +   P +      +  +  F + ++ 
Sbjct: 1   MNIALV-LNRVFRLEQNPMFEY-LNHNQADIERCYCVIPLEL-FEDEAPLKRTFYHQAVT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q  + L + GI                  S+C Q+ +  + +             +L  +
Sbjct: 58  QFIQQLIEIGIKPFVF-------PYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110

Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +    ++   +   +    P   LN   Q YKV+T F KA    L Q       +  ++
Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    I    +   + +     IGE  +    + F    + +Y   R+      TS
Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G L   +   +L E + D     +    +++ EL++REFY  LM +YP    
Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAH 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I W+++     AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K
Sbjct: 280 -TSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +L +DW  GE YF + L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +
Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKK 396


>gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
 gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
          Length = 428

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 155/449 (34%), Gaps = 47/449 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      ++RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---SQRPSENHNSRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I                 D   L        +    +      +   +  L H 
Sbjct: 80  RLAAHHIPLYVVAS----------DEDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHN 129

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                         G +    L           A  +                L  PV  
Sbjct: 130 FDRAGITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETEL--PVQT 187

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                 F     A+ P +  G + A        K+ + +Y   +  PA + TS L+ YLS
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQTFPARKNTSLLNAYLS 247

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR                     F WL +LI+R++   L                
Sbjct: 248 AGCISPRLLAAEGLANR----------HFEWLEKLIFRDYCYQLAYHR------------ 285

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
               E    + + + W+ G TG PIIDA++R L   G +H  L+ + A +    L  D  
Sbjct: 286 -RLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFDPN 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G  +  S     D A N   W +AA          R         + DP G++IR ++P
Sbjct: 345 QGIAWTASVQTGTDPALNQANWHFAAQDTATVRYAHR-------SHQIDPDGSYIRSYVP 397

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           EL ++P+  IH P +  D  D +  YP P
Sbjct: 398 ELAHLPSTLIHTPWAAADDID-THGYPFP 425


>gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
          Length = 158

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 23/153 (15%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TG P++DA MR+L   G+MHNR+RM+  SFL K+L + WR+GEE+F   L+D D 
Sbjct: 28  WQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADA 87

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN   WQW A  G+D+ P+FRIFNP  Q KRFDP G ++R W P L+            
Sbjct: 88  ASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALSA----------- 136

Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                        PIVD +++    L+ Y   K
Sbjct: 137 ------------PPIVDLQESRQAALDAYAEIK 157


>gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 7/208 (3%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181

Query: 448 DKN------DLSLNYPLPIVDHKKACHH 469
           +        +L  NYP PIV   +A   
Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEAKAR 209


>gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 7/208 (3%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181

Query: 448 DKN------DLSLNYPLPIVDHKKACHH 469
           +        +L  NYP PIV   +A   
Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEAKAR 209


>gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
 gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
          Length = 678

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 97/542 (17%), Positives = 171/542 (31%), Gaps = 118/542 (21%)

Query: 11  LVWLRNDLRITDNKALY-AACHNSD----------------------------AKVIAVF 41
           L  LR D+RI+DN   + AA   +                               ++ V+
Sbjct: 10  LYVLRRDVRISDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGGASFTHLLPVY 69

Query: 42  IATPEQW----------------------RQHGISARQSHFIYASLLQVQKSLSQK--GI 77
           + +  Q                       +       +  FI   +  ++  L+    G 
Sbjct: 70  VWSANQIEVSGFLPASTPSPYPEARSAVAQVWRTGPHRVQFIADGVWDLKNKLAGLDCGS 129

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
             +       +   + L+ Y   +    +      E +     +   +  +         
Sbjct: 130 GLEQRVGRLTEVVSDILNWYSKDENEGVISGVWMTEDDATEEKQEEAELAEITKQHGIDF 189

Query: 138 DSVLLPPGSILNHALQMYKV-----YTPFRKALIQNLVQADLRSLPVP------------ 180
                    I +  L    +          +   + L      +LP P            
Sbjct: 190 KVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKAFEPLRDRPRETLPTPSQLPPLPPSIPP 249

Query: 181 -------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                              +     P     +P  +    Q+  P           I   
Sbjct: 250 QKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRIAHL 309

Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL---------KEEFVDLL 271
                +  Y + R+ +  +  +++LS YL+ G ++ RQ    +          E+     
Sbjct: 310 VASGAMGSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMFDFEEGRGPGEKRHAYG 369

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCM------------------GKPFIPWTEK 313
                G  +   EL+WR++ R  M  +                        K      + 
Sbjct: 370 QGENEGTAAVRFELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKWKKLHKSGEDG 429

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
               K   + + ++ G TG  +IDA+ R+L   G+  NR R   ASFL   L +DWRIG 
Sbjct: 430 ENPQKTMEIFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRIGA 489

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           E++   L+D D ASN G WQ+ A  GND     R+FNP  Q   +D +G +I+ W+PEL 
Sbjct: 490 EWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEYIKAWVPELR 548

Query: 434 NV 435
           ++
Sbjct: 549 DI 550


>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
          Length = 378

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 143/384 (37%), Gaps = 24/384 (6%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +  +L +        +        +       +  +TKL      E     RD
Sbjct: 2   LLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERD 57

Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++K      +      S        I+        +     + LI  +   ++    +
Sbjct: 58  AAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETI 117

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228
            +  +    TP +      Y   +++            ++P GE  AL  L +  + K +
Sbjct: 118 TSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAW 177

Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +         S   +
Sbjct: 178 VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPL-SLYGQ 236

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL 
Sbjct: 237 LLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 295

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +     
Sbjct: 296 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-Q 354

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRH 427
            +F  + P   G+R DP G +IR 
Sbjct: 355 QFFHCYCPVGFGRRTDPNGDYIRR 378


>gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 114

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 1   DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 61  FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 113


>gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 206

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 7/205 (3%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181

Query: 448 DKN------DLSLNYPLPIVDHKKA 466
           +        +L  NYP PIV   +A
Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEA 206


>gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM
           45100]
          Length = 216

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 22/232 (9%)

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK---PFIPW 310
           +SPR  W  + E   +     +S A ++  +LIWR+F  H +   P++        F  +
Sbjct: 1   MSPRTVWATISEA-AERGEIAESEAGAFRRQLIWRDFAWHRLYHVPTLATCNVQAKFNRF 59

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                  +DS    AWK+G TG P++DA MR+L   G MHNR+RM+  S L K+LL+ WR
Sbjct: 60  PWGWNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNLLIHWR 119

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GEE+F   L+D D A N   WQW A  G+D+ PYFRIFNP  Q + FD +  + + W+P
Sbjct: 120 LGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQQTWVP 179

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQS 481
           E                        Y P PIVD K++    L  Y +  +  
Sbjct: 180 E-----------------AQTNHDGYPPQPIVDLKQSRAEALAVYESLGQDP 214


>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
          Length = 393

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 142/399 (35%), Gaps = 27/399 (6%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           LR+ DN +L       D +   VFI   E          +  F+   L  + K+L   G 
Sbjct: 2   LRLHDNPSLIDGLSECD-RFYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                Q        + L+    +  VTK+ +    E     RD+L+ + L  + +     
Sbjct: 61  RLYCFQ----GQPTDILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
            S  L     +          T     L+ + +    R +  P           N  + F
Sbjct: 117 VSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQNHDKQF 176

Query: 198 DYPFQAIDPMFPIGEQNALHILRK-------------------FCKEKVYYYVEQRDIPA 238
             P      + P  E+    ++                        E  Y    Q     
Sbjct: 177 GIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQYHPDL 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +     LS +L  G LS R+ +  + ++F ++         S   +L+WRE++  +    
Sbjct: 237 LSPPLSLSAHLRFGCLSVRKFYWSIHDKFEEVK-PSMGAPVSLSAQLMWREYFYTMAINN 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +    +   P    I W  +    + W QG TG+P IDA M+QL   GW+H+  R   +
Sbjct: 296 INYDKMET-NPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHVARHAVS 354

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
            FL + DL ++W +G + F   LLD D +   G W W +
Sbjct: 355 CFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWLS 393


>gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 278

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 117/266 (43%), Positives = 160/266 (60%), Gaps = 2/266 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLRI DN AL AAC   DA V+A+FIATPEQWRQH ++ RQ+  + A L 
Sbjct: 1   MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL++KGI   Y +  +F    + + + C Q  VT L+YN QYE NE +RD+ LEK 
Sbjct: 61  DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+L PGS++  + +MYKV+TPF+ A I+ L +     +  P +R   
Sbjct: 121 L-AGVVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVR-GE 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +T     R         + +FP  E+ A+  LR+FC +    Y  +RD PA +GTS+LS
Sbjct: 179 TITDMPAIRLNYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSRLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI 272
             L++G LSPRQC +RL  E    L 
Sbjct: 239 ACLALGALSPRQCLHRLLAEQPQGLD 264


>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
          Length = 377

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 24/374 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      SD  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++++L      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +      S        I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP +      Y   +++            ++P GE  AL  L +  + K +    +
Sbjct: 176 GKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R           T+ LSPYL  G LS    + +L + +  +         S   +L+WRE
Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLYKMVKKNSSPPL-SLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK 363
           H+  R   A FL +
Sbjct: 354 HHLARHAVACFLTR 367


>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
          Length = 278

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W
Sbjct: 1   IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      
Sbjct: 61  LSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP P+V+H +A    + +     +Q
Sbjct: 120 KCVIGVHYPKPMVNHAEASCLNIERMKQIYQQ 151


>gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata]
          Length = 438

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 158/438 (36%), Gaps = 33/438 (7%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQ------WRQHGISARQSHFIYASLLQVQKSL 72
           R+ DN A   AC      V+AV    P        W   G+S  +  +  A++ ++++ L
Sbjct: 2   RLQDNPAWTRACAMG-RPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAATVQELRREL 59

Query: 73  SQKGIVFQYHQCSNFDDSIEWLD----------SYCLQQRVTKLFYNRQYEINEVRRDKL 122
              G+     +  + +  +   +                   +L   R   I      + 
Sbjct: 60  DALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERAQLSSLRASGIVVHSVWQG 119

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              + +      +    V     + +  A   ++   P    +    +  D  S     +
Sbjct: 120 TLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDAVSFAEDFV 179

Query: 183 RLTGPVTPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                      PR                  +D +         ++       +V  Y  
Sbjct: 180 DGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLESGRVAQYKA 239

Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+    +  +S+ SP+L++G +S  +    LK    +       G++    EL+WR+++
Sbjct: 240 TRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGTTD--GSYWLWFELLWRDYF 297

Query: 292 RHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           R L   +   +   K  +   +             W QG TG  ++DA MR+L   G++ 
Sbjct: 298 RWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMRELACSGYLS 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R + ASFL+ +L  DWR G  +F SQLLD D+ SN G W + A  G D     R FN
Sbjct: 358 NRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPRG-GRRFN 416

Query: 411 PTIQGKRFDPQGTFIRHW 428
              Q    DP G +   W
Sbjct: 417 VAKQTADHDPDGAYRALW 434


>gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 286

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 131/301 (43%), Gaps = 46/301 (15%)

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           P      F           P   Q                Y +  DIP+   TS LS +L
Sbjct: 5   PPTFDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLSAHL 64

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +SP Q W      F D      + A+++L +L+WR+F  H + + P++        
Sbjct: 65  RFGEISPAQIWAET-AAFADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLATRNVREQ 123

Query: 310 WTEKIEWNKDSHLLQA--------------------------WKQGYTGFPIIDAAMRQL 343
           +        D     +                          W++G TG P++DA MR+L
Sbjct: 124 FNAFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGMREL 183

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G MHNR+RM+  S+L K+L + WR GEE+F   L+D D ASN   WQW A  G+D+ 
Sbjct: 184 WATGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGDDAA 243

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFRIFNP +Q ++FDPQG +I  W+PE         H P            YP P+VD 
Sbjct: 244 PYFRIFNPLLQEEKFDPQGIYINQWVPE--------RHTPM-----------YPEPMVDV 284

Query: 464 K 464
           K
Sbjct: 285 K 285


>gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri]
          Length = 548

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 135/344 (39%), Gaps = 17/344 (4%)

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
                K         + +L            +   G    S+    +    +A   +   
Sbjct: 70  CGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGIRADWDISEG 129

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G             ++      + D  A    S+LSPYL  G++SPR  ++ L ++    
Sbjct: 130 GAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYHDLVKKDGKN 189

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQ 328
           + K       + + L  RE     +  +P +     +        +  ++    L+ W++
Sbjct: 190 ISKT------FWHRLYRRELAYWQLHHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQR 243

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TGFP++D  MR+L   GWMH   RMITA+FLV  L V W  G ++FM  L+D D A N
Sbjct: 244 GETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMRTLVDADEAIN 303

Query: 389 NGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSW 446
           +  WQ A  +G D   +F     P    +  DP G  I  W+PEL  +P  Y+ H P   
Sbjct: 304 SMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPRGYLRHRPWEA 363

Query: 447 LDK------NDLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483
                     +L   YP   IVD  +A    L+     +   L+
Sbjct: 364 SKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 407


>gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella]
 gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella]
 gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella]
 gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella]
 gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella]
 gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella]
 gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella]
 gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella]
 gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella]
 gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella]
 gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella]
 gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella]
 gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella]
 gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella]
 gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella]
 gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella]
 gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella]
 gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella]
 gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella]
 gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella]
 gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|289804363|ref|ZP_06534992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 94

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 68/94 (72%)

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W 
Sbjct: 1   NNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA 60

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 61  EKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 94


>gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella]
          Length = 155

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155


>gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 565

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 13/318 (4%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                  ++   G V+  +    +    +A   M   G  +          EK      +
Sbjct: 99  PEHGFAASLEELGIVSDVDKRLDWAAGIRAEWTMSESGAASTWEHFASVGLEKFEDDHGR 158

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYR 292
            DI A    S LSPYL  G +SPRQ ++ L  ++     ++ K  +  + + L  REF  
Sbjct: 159 ADIVAPAAVSTLSPYLRHGQISPRQIYHELATKKMGSDGVEGKKLSRVFWHRLYRREFAY 218

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTIGWM 349
             +  +P +        +  +  W +          W+ G TGFP +DA MR+L   GWM
Sbjct: 219 WQLHNWPELPSKSVRGHYENRKAWLEGDEAAVALHRWQTGTTGFPTVDAGMRRLWATGWM 278

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RI 408
           H   RMI A+FLV    V W  G ++F+  L+D DLA N+  WQ A  +G D    F   
Sbjct: 279 HQSERMIAATFLVDYCGVHWTHGADWFLDTLVDADLAINSMMWQNAGKSGLDQWDVFAGS 338

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKN------DLSLNYPLPIV 461
             P    +  DP+G  I  W+PEL  +P  ++ H P     K       +L   YP  ++
Sbjct: 339 LTPDGSSRAHDPEGESIARWIPELAALPKGHLRHRPWEASAKQLDAAGVELGSTYPTRMI 398

Query: 462 -DHKKACHHTLNQYYAAK 478
            D + A    L+   A +
Sbjct: 399 TDLEGARRRMLDDVNALR 416


>gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL
Sbjct: 6   WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 65

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
            S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +
Sbjct: 66  ESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWN 125

Query: 446 WLDKN------DLSLNYPLPIVDHKKACHH 469
             +        +L  NYP PIV   +A   
Sbjct: 126 APESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|325518601|gb|EGC98260.1| deoxyribodipyrimidine photolyase [Burkholderia sp. TJI49]
          Length = 111

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFNP  Q
Sbjct: 1   MVVASFLAKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGVDAAPYFRIFNPVAQ 60

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
           G+RFDP G ++R W+PEL  +    IHAP              L ++YP P
Sbjct: 61  GRRFDPHGAYVRRWVPELAGLDDAAIHAPWEASTLALAAAGVRLGVDYPAP 111


>gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
          Length = 425

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 22/406 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62
            V L+W RNDLR  DN+ L+     S   +I V+   P  +             ++ FI 
Sbjct: 4   KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++ ++++     G        S      E +     +  V ++F++R+    E    + 
Sbjct: 63  DAVRELKEKFVAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178
           +E  L    I         L     L   ++         K  I+             + 
Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVM 178

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           V    L     P+     +           PI  +       K  +E +     ++    
Sbjct: 179 VTHPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDYM 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +     LSPY++ G LSP   ++++K+  + L  K          +L+WR+++R ++  Y
Sbjct: 239 M-----LSPYIAAGALSPIYLYHKIKDAKLVLNKKRT---EKLTAQLLWRDYFRFMLKKY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+V   K     +E      +   L+ W+ G TG+  ID AM+ L+  G + + ++ I +
Sbjct: 291 PNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSDIKKIVS 350

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            F V++   DWR G  YF   L+D   A+  G W   A  G     
Sbjct: 351 LFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGTSIKN 396


>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 425

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 152/406 (37%), Gaps = 22/406 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62
            V L+W RNDLR  DN+ L+     S   +I V+   P  +             ++ FI 
Sbjct: 4   KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++ ++++  +  G        S      E +     +  V ++F++R+    E    + 
Sbjct: 63  DAVRELKEKFAAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178
           +E  L    I         L     L   ++         K  I+             + 
Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVM 178

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           V    L     P+     +           PI  +       K  +E +     ++    
Sbjct: 179 VTHPHLEKTTIPTLEELGYTAEEIQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDYM 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +     LSPY++ G LSP   ++++K+  + L  K          +L+WR+++R ++  Y
Sbjct: 239 M-----LSPYIAAGALSPIYLYHKIKDAKLVLNKKRT---EKLTAQLLWRDYFRFMLKKY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+V   K      E    + +   L+ W+ G TG   ID AM+ L+  G + + L+ I +
Sbjct: 291 PNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSDLKKIVS 350

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            F V++   DWR G  YF   L+D   A+  G W   A  G     
Sbjct: 351 LFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVGTSIKN 396


>gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
 gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
          Length = 489

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 135/344 (39%), Gaps = 17/344 (4%)

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
                K         + +L            +   G    S+    +    +A   +   
Sbjct: 11  CGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGIRADWDISEG 70

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G             ++      + D  A    S+LSPYL  G++SPR  ++ L ++    
Sbjct: 71  GAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYHDLVKKDGKN 130

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQ 328
           + K       + + L  RE     +  +P +     +        +  ++    L+ W++
Sbjct: 131 ISKT------FWHRLYRRELAYWQLHHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQR 184

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TGFP++D  MR+L   GWMH   RMITA+FLV  L V W  G ++FM  L+D D A N
Sbjct: 185 GETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMRTLVDADEAIN 244

Query: 389 NGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSW 446
           +  WQ A  +G D   +F     P    +  DP G  I  W+PEL  +P  Y+ H P   
Sbjct: 245 SMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPRGYLRHRPWEA 304

Query: 447 LDK------NDLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483
                     +L   YP   IVD  +A    L+     +   L+
Sbjct: 305 SKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 348


>gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+]
          Length = 813

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++SN
Sbjct: 508 GTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEMLLVDYDVSSN 567

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWL 447
              WQ+ A  GND   + RIFNP  QG  +DP G+++R W+PE++ +   +    P +  
Sbjct: 568 WANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLENAFQPWTAS 627

Query: 448 DKN 450
            + 
Sbjct: 628 KEE 630



 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 34/210 (16%)

Query: 3   ATTAMSVH-------LVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQW--- 48
           +   M+V        +  +R DLR +DN   +AA    D +     + V++   +Q    
Sbjct: 17  SRAIMTVSKAPQNILIHIIRRDLRTSDNPLFHAAATAPDEEKFDAYLPVYVFDAQQIDVS 76

Query: 49  --------------------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
                                 H     ++ F+  ++  + ++L +             D
Sbjct: 77  GFIQSAGATNPYGSPRSQVAGYHRCGPHRAKFLGEAVWDLSETLKELKSGLFIRVGRIPD 136

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
                +     +       +   +E +E + D+     L  +V  K              
Sbjct: 137 VVETLVSELAKKDAKIGAVWMTSHEGSEEKADEKAVASLCKKVGAKWKLWVDEKYFIDDC 196

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             + Q  K  +      +    +   R   
Sbjct: 197 RVSSQSTKRSSCPCARSLVRFFRLSRRVHC 226


>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
          Length = 216

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 8/186 (4%)

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +             +   LQ W QG TGFP+IDAAMRQL   GW+H+ LR   A+FL 
Sbjct: 1   RMEDNEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLT 60

Query: 363 KD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDP 420
           +  L  +W  G  YF+  LLD D +   G W W +S+  + +     +  P    KR DP
Sbjct: 61  RGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDP 120

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +I+ ++PEL NVP +YIH P +         +  + ++YP  ++D   A    +N  
Sbjct: 121 MGQYIKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMNAM 180

Query: 475 YAAKKQ 480
              +  
Sbjct: 181 RTLRNS 186


>gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora]
          Length = 530

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 115/321 (35%), Gaps = 36/321 (11%)

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            Q+          +  + +            F    ++  P           I       
Sbjct: 5   QQSPFSIPDTCEKLVDVVVRPVKNFLKNLPDFPKKAESSHPFRGGETSAHKRIDDLIMSG 64

Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------- 275
            +  Y + R+     + +++LS YL+ G ++ RQ  + L         + +         
Sbjct: 65  GMKRYKDTRNGLLGPEFSTKLSAYLAQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGD 124

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------- 324
             G  +   EL+WR++ R     Y                   +D               
Sbjct: 125 NQGTETVRIELLWRDYMRLCHQKYGDKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALP 184

Query: 325 --------------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                          +  G TG  +IDA+ R+L   G+  NR R   ASFL K + +DWR
Sbjct: 185 GQDPTPEKVADILARFNAGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHMEIDWR 244

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G E++   L+D D++SN   WQ+ A  GND     RIFNP  Q   +D  G ++R W+P
Sbjct: 245 YGAEWYEMLLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVP 304

Query: 431 ELNNVPT-QYIHAPHSWLDKN 450
           E+ +    + +    +   ++
Sbjct: 305 EVASFENLENVFQAWTASKED 325


>gi|295113007|emb|CBL31644.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 111

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ ++PEL  VP +
Sbjct: 1   MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQK 60

Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           YIH P+   +         L  NYP PIVD+  + +        AKK
Sbjct: 61  YIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKNKHCFYMKRAKK 107


>gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii]
          Length = 180

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
             P   +I W+++   L  W +  TGFP IDA M QL   GW+H   R     FL + DL
Sbjct: 2   GNPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDL 61

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            ++W  G + F   LLD D + N G W   + +      +F  + P   G+R DP G FI
Sbjct: 62  WINWEEGMKIFEELLLDADWSVNAGSWLCHSCSSFF-QQFFHCYCPVGFGRRIDPNGDFI 120

Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R +LP L + P ++I+ P +         K  + ++YP P+V+H +A    + +     +
Sbjct: 121 RCYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERMRQIYQ 180


>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
          Length = 374

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 142/380 (37%), Gaps = 22/380 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69
           + W R  LR+ DN+ALY A   S   V  ++I     Q  +   SA ++ F+   L  + 
Sbjct: 8   VHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDLD 66

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + G            D+   +  +C +  +T++ + +  EI    RD+ + K +  
Sbjct: 67  EGLKKCGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHR 122

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  KSF    L     ++        +      A I ++ Q                 
Sbjct: 123 MEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCIAPAVDNH 182

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------QGT 242
             +                 PI        L+    +     +   +            T
Sbjct: 183 ESTYGIPKISVWGHQAPRSLPIYRGGERQALKALQAKINDPTLFTLNGFNQGVKTKLPHT 242

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LS Y + G +S R  W   ++      I           ++++REF+ ++ A   +  
Sbjct: 243 TYLSAYQNYGCISTRHFWKAAEKLPESKTIM-------LRGQIMYREFF-YVAASQVNNF 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                     +IEW K+   L AW++G TG+P IDA MRQL T G++H+  R   ASFL 
Sbjct: 295 TKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFLT 354

Query: 363 K-DLLVDWRIGEEYFMSQLL 381
              L ++W  G+E     L+
Sbjct: 355 NGQLWLNWEHGQESMFYDLI 374


>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus]
          Length = 361

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 23/362 (6%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           LR+ DN AL  A  ++   +  ++I  P       +   +  F+  SL  +  SL +   
Sbjct: 3   LRLHDNPALQEALRDA-TSLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNS 61

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                +        +       +  VT+L +    E     RD  + K  +   +    +
Sbjct: 62  RLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117

Query: 138 DSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
           +S        I+        +     +A+I  +         V + ++            
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177

Query: 197 FDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----G 241
             Y   +++            ++  GE  AL  L K  + K +    +R           
Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLAS 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+       P  
Sbjct: 238 PTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKF 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 297 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 355

Query: 362 VK 363
            +
Sbjct: 356 TR 357


>gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 143

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GW
Sbjct: 1   YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450
           Q+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  +    
Sbjct: 61  QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120

Query: 451 ----DLSLNYPLPIVDHKKACHH 469
               +L  NYP PIV   +A   
Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143


>gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei]
          Length = 155

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 2   DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR +LP L   P +YI+ P +  +      K  + LNYP P+V+H +A    + +    
Sbjct: 61  YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEASRLNIERMKQI 120

Query: 478 KKQS 481
            +Q 
Sbjct: 121 YQQP 124


>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
          Length = 361

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 131/362 (36%), Gaps = 23/362 (6%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           LR+ DN AL      +D  V  V+I  P       +   +  F+  SL  +  SL +   
Sbjct: 3   LRLHDNPALRECIQGADT-VRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNS 61

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                +        +       +  VT+L +    E     RD  + K  +   +    +
Sbjct: 62  RLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117

Query: 138 DSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
           +S        I+        +     +A+I  +         V + ++            
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177

Query: 197 FDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----G 241
             Y   +++            ++  GE  AL  L K  + K +    +R           
Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLAS 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+       P  
Sbjct: 238 PTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKF 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 297 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 355

Query: 362 VK 363
            +
Sbjct: 356 TR 357


>gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
 gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
          Length = 164

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             S+L+ L W   +   +   PS+        + +      +    +AWK G TG+P+ID
Sbjct: 1   MRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMID 60

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MR L    W++ R+R +  SF    L +DWR+   Y      D +   +    Q    
Sbjct: 61  ACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQ 118

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           +G   +   RI+NP  Q     P G FIR WLPEL NV  + IH P
Sbjct: 119 SGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP 164


>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
 gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
          Length = 410

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 140/393 (35%), Gaps = 24/393 (6%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           L  A   SD+ ++ V+   P  +             ++ F+  S+  ++ S  Q G    
Sbjct: 2   LVEAISKSDS-ILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLL 60

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSV 140
                 +    E +     Q  +++++++R+    E +    +E  L    I        
Sbjct: 61  VL----YGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGH 116

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
            L     L   ++         K   +         L    I          +P   D  
Sbjct: 117 TLYNKEDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDHIEFVENEDWGQLPGLKDLG 176

Query: 201 FQAIDPMFPIGEQNALHILRKFCKE----------KVYYYVEQRDIPAIQGTSQLSPYLS 250
           F+  +  FP  E           +               Y  ++       +S+LS +LS
Sbjct: 177 FE--EETFPGEEDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAEREAFSSRLSGWLS 234

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G LSPR  +  +KE                   L+WR++YR +   + +    +P    
Sbjct: 235 LGCLSPRMVYWMVKEAESKFGSNANFNQMLL--GLLWRDYYRFMFKKHGTRFFKEPDFES 292

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                 +  + +L+ WK   TG+P+ID  M +LN  G++    R++ A++LV  L V W 
Sbjct: 293 DFFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVVATYLVHFLKVHWT 352

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
            G  YF  +L+D   ASN G W   A  G D  
Sbjct: 353 NGAVYFEEKLIDYAPASNWGNWANVAGVGKDGK 385


>gi|323228031|gb|EGA12174.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 84

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           TG D+ PYFRIFNPT QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP
Sbjct: 1   TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYP 60

Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481
            PIV+HK+A   TL+ Y AA+K +
Sbjct: 61  RPIVEHKQARIATLSAYEAARKGA 84


>gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 150

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 2/152 (1%)

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +   PS+        + +      +    +AWK G TG+P+IDA MR L    W++ 
Sbjct: 1   MQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDACMRALIATRWLNF 60

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP
Sbjct: 61  RMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNP 118

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
             Q     P G FIR WLPEL NV  + IH P
Sbjct: 119 IKQSIDQYPNGEFIRRWLPELENVSNENIHTP 150


>gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
 gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
          Length = 463

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 150/438 (34%), Gaps = 71/438 (16%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS--------------------------------- 33
           M + +  LRNDLR  DN+ L+ A  N+                                 
Sbjct: 5   MKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFL 64

Query: 34  -----------DAKVIAVFIATPE------QWRQHGISARQSHFIYASLLQVQKSLSQKG 76
                         VI ++   P       Q+        +  F+  S+  ++ +L   G
Sbjct: 65  LESVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLESVRDLRTTLQSVG 124

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-----V 131
                       +  + +     Q    ++      E        +     Q        
Sbjct: 125 SGLVVRS----GNPEDVVPQLIQQFGEGEVAAVALQEEATREELDVEAGLHQSCSKLGVQ 180

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           + K +  ++         H  ++  VYT FRK +          ++P P   L   V   
Sbjct: 181 VKKFWGSTLYHREDVPFRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEG 240

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRDIPA-IQGT 242
           +IP F  +  +                           +  + +  Y E R+     + +
Sbjct: 241 DIPVFSSFGLKDPGSDSRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYS 300

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ + +L+ G +SPRQ    +K    +         +  + ELIWR++++ +   +    
Sbjct: 301 TKFAAWLAHGCVSPRQIHAEVKRYEKERTENQ--STYWVIFELIWRDYFKFVALKFGDKM 358

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +       WNK+     AW +G TG P +DA +R++   G+M NR R   ASFL 
Sbjct: 359 FYLSGL-LGVHKPWNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLT 417

Query: 363 KDLLVDWRIGEEYFMSQL 380
           KDL++DWR+G E+F   L
Sbjct: 418 KDLVLDWRLGAEWFEQML 435


>gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 186

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181

Query: 448 DKN 450
           +  
Sbjct: 182 ESV 184


>gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEW 62

Query: 440 IHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477
           IH P    +        +L  NYPLPIV+  +A       L++ +  
Sbjct: 63  IHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 109


>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 439

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 147/400 (36%), Gaps = 22/400 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           MS  + W RNDLR+ DN A   AC  S + ++ VF   P       W    +   +  F+
Sbjct: 1   MSTVIYWFRNDLRLLDNPAFLLACRES-SHIVPVFCHDPSDRALTHWGFERVGDHRRAFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            A+L  +   L+ +G               + L +       T +        +E    +
Sbjct: 60  AATLADLAAQLAARGSELI----ELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ 115

Query: 122 LLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L    L   ++ +S        P S            T   KA +   V  D  +L  P
Sbjct: 116 ALRTAGLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPVPEDYPALIPP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--------YYYVE 232
              L  P+           P   +   FP                          + Y +
Sbjct: 176 LPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGGTSAGLAHLHQYLERKLAHTYKD 235

Query: 233 QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+       +S+ SP+L+ G LS R     +++   D         +    EL+WR+++
Sbjct: 236 TRNGLMGLDYSSKFSPWLATGALSARTINAAIEQFEDDFGAND--STYWLWFELLWRDYF 293

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R L   Y         +          D+     W  G TG PI+DA MR+L T G++ N
Sbjct: 294 RFLHLKYGRKLYRHYGLADAGMARPVHDAAQFARWSHGLTGEPIVDAGMRELATTGYLSN 353

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           RLR I AS+L+ DL  DWR G  +F SQL+D D+ S  G 
Sbjct: 354 RLRQIVASYLIHDLGGDWRAGAAWFESQLVDYDVYSQPGQ 393


>gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 226

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 82/186 (44%), Positives = 113/186 (60%), Gaps = 5/186 (2%)

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  +    S L  YL+ G+L  R+  N L E++            +++ ++I+REFY  L
Sbjct: 46  DDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYESDEK----NYEAFIRDVIFREFYYVL 101

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  YP     K F      ++W+ +    + WK+G TG+PI+DAAM++LN  G+MHNRLR
Sbjct: 102 MMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQTGYPIVDAAMKKLNRTGYMHNRLR 160

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ + FL K+L +DW  GEEYF   L+D D ASN  GWQW+ASTG D VPYFR+FNP  Q
Sbjct: 161 MVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHGWQWSASTGTDEVPYFRMFNPIRQ 220

Query: 415 GKRFDP 420
            +RFD 
Sbjct: 221 SERFDK 226


>gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
          Length = 164

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             S+L+ L W   +   +   PS+        + +      +    +AWK G TG+P+ID
Sbjct: 1   MRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMID 60

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MR L    W++ R+R +  SF    L +DWR+   Y      D +   +    Q    
Sbjct: 61  ACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQ 118

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           +G   +   RI+NP  Q     P   FIR WLPEL NV  + IH P
Sbjct: 119 SGTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNENIHTP 164


>gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
 gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 171/379 (45%), Gaps = 19/379 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + M V ++W R DLRI   KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 7   RKGSVM-VSVMWFRRDLRIDVQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120
             S+L  +K L  +GI         + D +   +    Q    T +++N         RD
Sbjct: 64  T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +   +  +   I         L     I+N + Q YKV+TP+ +       +  ++    
Sbjct: 119 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 178

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               L        +        +    +       A   L +F ++++  Y   RD PA 
Sbjct: 179 QGRWLNLETPDDVLRTVESIKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L IG +  R  ++ +++    L      G  ++L EL WR+FY  +   YP
Sbjct: 237 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI AS
Sbjct: 291 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 349

Query: 360 FLVKDLLVDWRIGEEYFMS 378
           FL KDLL DWR+GE+YF  
Sbjct: 350 FLTKDLLCDWRLGEQYFQQ 368


>gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica]
          Length = 429

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 19/360 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGISARQSHFIYAS 64
            + +   R DLRI DN +L AA  +   K++ VFI  PEQ         S     F+  S
Sbjct: 67  KIAVFIFRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLS 125

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L QV K L + G    + + +N     + L     +     ++ N  Y    V RD+ + 
Sbjct: 126 LSQVHKELVKIGSKLNFIKLAN----ADALTQLKKEVNFDAVYSNEDYSFYAVSRDQEVR 181

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              +   +     +D  ++     L+   +  + +  F +    N        +      
Sbjct: 182 SWCRENRVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDN 241

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    IP    + F   +P   +    +  +      EK+  Y  Q ++   + + 
Sbjct: 242 FVSFDLNCEIPEQQIHTFYENNPKLAVTPGRSGGMANLKSFEKLVDYRAQHNMLDQETSR 301

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
             SP+   G +S R+ + R  + F +         F  + +L WRE Y  + A  P    
Sbjct: 302 S-SPHTKFGTVSVRETYWRGMDLFGE--------DFHVIRQLGWREMYLKVYAARPEWQK 352

Query: 304 GKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           G+      ++  +W+ D  + Q W QG TGFPI+DA MR+LN  G+ HNR RM  AS L 
Sbjct: 353 GQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASVLT 412


>gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++I
Sbjct: 1   LDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWI 60

Query: 441 HAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477
           H P    +        +L  NYPLPIV+  +A       L++ +  
Sbjct: 61  HHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 106


>gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 338

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 107/257 (41%), Gaps = 5/257 (1%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           D+        RL      + +P      F               H  R F       Y E
Sbjct: 58  DIAHPIDAPSRLPPMPKDAQLPTLSSSCFDESALFSGGEWSGLAHCRRYFSSGLASSYKE 117

Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+    +  +++ SP+L++G +SPR  +  LK+   +              EL+WRE++
Sbjct: 118 TRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTNWIYFELLWREYF 175

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                 Y         I     +         Q WK G T + I++A M QLN  G+M N
Sbjct: 176 YWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYLIVNACMHQLNHTGYMSN 234

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R + AS LV +L +DWR G  +F +QL+D D+ SN G WQ+ A  G D     R FN 
Sbjct: 235 RGRQLVASCLVHELGLDWRYGAAHFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNL 293

Query: 412 TIQGKRFDPQGTFIRHW 428
             Q + +DP   FI  W
Sbjct: 294 EKQTQMYDPNHEFIERW 310


>gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 167

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L  
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRD 164


>gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica]
          Length = 168

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                   L  A++   TGFP +DA + +L T G + +  R+  A+FL K L VDWR GE
Sbjct: 5   WWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHGE 64

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F   L+D D   NNG WQ+   TG        I+NP  Q K+FD  G +I+ WLP L 
Sbjct: 65  KFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFLA 124

Query: 434 NVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475
            V   ++HA        +LS  +Y  P+V++ KA  ++L  + 
Sbjct: 125 KVGPAHLHAWEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMFK 167


>gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
 gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
          Length = 647

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 26/229 (11%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------------------- 277
             +++LSP+ ++G ++PR+ +  ++   V                               
Sbjct: 414 DSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPAPA 473

Query: 278 -AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
                   L  R+F+ + +       + +  I   + + W +D  +L  W  G TG P +
Sbjct: 474 ECDWLAMHLCIRDFWTYTVLKEGLATLDERGI-VGQPVSWRRDPEVLARWCSGRTGLPFV 532

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GWM NR R   AS L KDL  DWR G E F   LLD D+A N   W + A
Sbjct: 533 DANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVNYCNWNYFA 592

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
             GND     R F    QG ++D        WLPEL ++P +  HAP S
Sbjct: 593 GVGNDPRN--RRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS 639



 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQW-----------RQHGISARQSHFIYASLLQ 67
          R+ DN+AL +A  ++DA  +AV I  P                  +   ++ F+   L +
Sbjct: 2  RLDDNEALTSAVRHADA-TLAVHILDPRDLLPRRPRSEGGLGVPKLGPPRAKFMLEGLNE 60

Query: 68 VQKSLSQKG 76
          +++ L + G
Sbjct: 61 LRRQLQELG 69


>gi|300712647|ref|YP_003738460.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
 gi|299126331|gb|ADJ16669.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
          Length = 196

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L   G+++ R+R + ASF    L   WRIG ++    L+D D A N    QW    G
Sbjct: 1   MRALTETGFLNFRMRAMVASFFSYILKQWWRIGADFMYYHLIDADPAINYA--QWQMQCG 58

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---- 455
                  RI+NP  Q +  DP G FIR ++PEL N+ T ++  P                
Sbjct: 59  LVGCHPNRIYNPRKQVRENDPAGEFIREYVPELQNLSTTFLERPEKTPLHVQEQSGVTIG 118

Query: 456 ------YPLPIVDHKKACHHTLNQY 474
                 YP PIVD ++       Q+
Sbjct: 119 DTSDAVYPYPIVDFEREATLAREQF 143


>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
          Length = 251

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR++D+ AL  AC+     V+ VF+   +       +  +  F+  +L 
Sbjct: 1   MACTVVWFRRDLRLSDHAALSEACNQ--GAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L Q+G            D  E L           +  +   E    R       R
Sbjct: 59  ALDADLRQRGGRLLIR----CGDPAEQLLQVVQLSGADGVIAHTDSERLVGRVRDARVSR 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                             G ++ ++    +      +A+    + A  R +  P    + 
Sbjct: 115 TLAAHRIPLRWVEPAGACGELMAYSGWSRQW----HQAMASPALPAPERVVVPP---PSS 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQ 244
            +  + +P       +      P G   A     +   E      Y  +   P+ + T+ 
Sbjct: 168 ALPDTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCEGSASRSYYWELSYPSAKVTTG 227

Query: 245 LSPYLSIGVLSPRQCWNRL 263
           LSPYL  GV+SPRQC  RL
Sbjct: 228 LSPYLKFGVISPRQCLQRL 246


>gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 273

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 5/216 (2%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
                  F  +    Y E R+     + +++LS +L+ G LS R+   +++    +  I+
Sbjct: 62  NHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQR--FEQTIE 119

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                +    EL+WREF+  L   Y +       I    K     D      W +G TG+
Sbjct: 120 KNDSTYWVYFELLWREFFHWLQCKYGAKWFRFSGI-QGRKPTTCHDPETFSRWCKGETGY 178

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
            I+DA MRQL   G+M NR R + AS  V +L  DWR G  +F  QL+D D+ SN G W 
Sbjct: 179 RIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWL 238

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + A  G+D   + R FN   Q + +DP G F + WL
Sbjct: 239 YLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273


>gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa]
          Length = 154

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 9/125 (7%)

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG ++D 
Sbjct: 1   AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDS 60

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTL 471
           +G ++R WLPEL  +PT++IH P +           +L  NYP PI+D   A       +
Sbjct: 61  EGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIIDIDLAREQLTQAI 120

Query: 472 NQYYA 476
            + + 
Sbjct: 121 FKMWE 125


>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
          Length = 893

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +           W ++    + ++ L+ W+ G TG  +IDA+ R+L   G+  NR R
Sbjct: 452 MQKFTWFSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYTGFTSNRAR 511

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ++F  K + +DWR G E++   L+D D+ SN G WQ+AA  GND     R  NP  Q
Sbjct: 512 MVVSNFFAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIERDLNPVKQ 571

Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLN 455
              +DP+G ++R WLPE+  +   +++  P +       S N
Sbjct: 572 AFDYDPKGLYVRAWLPEVARLKELRHLFQPSAAPPSAVTSAN 613



 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 29/191 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHN----SDAKVIAVFIATPEQW------------------ 48
           +  LR DLR+ DN+ L+    N    +   ++ +++    Q                   
Sbjct: 24  IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83

Query: 49  ------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-Q 101
                         ++ FI   L  V++SL   G           +     +     +  
Sbjct: 84  AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
           RV+ ++   +    E   +  +    +   I      +        +      + +   +
Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHYYLWPNEKHFIAEYVPSIPVPFTISGVY 203

Query: 162 RKALIQNLVQA 172
                 + +  
Sbjct: 204 TDKPSNHAIVP 214


>gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group]
          Length = 298

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 19/296 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L   
Sbjct: 66  SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  I + +   +  +  + +  ++  + A     P   + + G  +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182

Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +           +  +     +   +  G +NA  +L +F    +  Y +        
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYR 292
            TS LSPYL  G +S R+ +  ++    +   +   + +     ++  +  RE+ R
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298


>gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 480

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 136/396 (34%), Gaps = 25/396 (6%)

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
            L           +  +   E         +     +R + +   +   + P        
Sbjct: 2   VLARLAKDSGARHVLAHTDSERLV----GRVRDARVNRHLQQQGIELEWIEPAGASGKLQ 57

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                   +  A+   LV    R +    +    P  P    +                +
Sbjct: 58  PYSDWNRQWHGAMAAPLVPEPQRVV----VPEQCPDAPVPSLKDLGLISDGKPIPKAGTD 113

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
                + R         Y  +   P+ + TS LSPYL  GV+SPRQC  RL    +    
Sbjct: 114 AALGRLDRFLEGSDSRTYYWELSYPSAKVTSGLSPYLKFGVVSPRQCLQRLTAAGLRAKE 173

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWK 327
                    + +L  R  +   +                   +       +   L +AWK
Sbjct: 174 NADRSRLRSIQQLFSRLRWGCSIHQRFRYLPQLELRSLWSAFDQESALSAQQIELYEAWK 233

Query: 328 QGYTGFPIIDAAMRQLNTIG---WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +G TGFPI+DAA   L   G    ++ R R I ASFL     +DWR G  +FM  L+DGD
Sbjct: 234 EGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRYGALHFMRHLIDGD 293

Query: 385 LASNNGGWQWAASTGNDSVP-YFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHA 442
              ++  W   A         +  I++P      R DP G FIR WLP+L  +    +  
Sbjct: 294 CPIDHYQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRRWLPQLERLTNDQLGE 353

Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P ++        +YP P++++++A    +      +
Sbjct: 354 PPAFA-------DYPAPVLNYEEARQARMEALSNTR 382


>gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476
                        +L  NYPLPIV+   A       L++ + 
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102


>gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies]
 gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies]
 gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies]
 gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies]
 gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476
                        +L  NYPLPIV+   A       L++ + 
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102


>gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies]
 gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies]
 gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies]
 gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies]
 gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies]
 gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies]
 gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies]
 gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies]
 gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies]
 gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies]
 gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies]
 gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies]
 gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies]
 gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies]
 gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies]
 gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies]
 gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies]
 gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies]
 gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies]
 gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies]
 gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies]
 gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies]
 gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies]
 gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies]
 gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies]
 gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies]
 gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies]
 gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies]
 gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies]
 gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies]
 gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies]
 gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies]
 gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies]
 gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies]
 gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies]
 gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies]
 gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies]
 gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies]
 gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476
                        +L  NYPLPIV+   A       L++ + 
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102


>gi|332093769|gb|EGI98823.1| deoxyribodipyrimidine photo-lyase domain protein [Shigella boydii
           5216-82]
          Length = 78

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNP  QG++FD +G FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A
Sbjct: 4   RIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEA 63

Query: 467 CHHTLNQYYAAKK 479
              TL  Y AA+K
Sbjct: 64  RVQTLAAYEAARK 76


>gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies]
 gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies]
 gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies]
 gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies]
 gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies]
 gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies]
 gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476
                        +L  NYPLPIV+   A       L++ + 
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102


>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
 gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
          Length = 526

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 117/336 (34%), Gaps = 37/336 (11%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL +A   +   V+ V+   P  + +           ++ F+   
Sbjct: 190 AIVWFRNDLRVHDNEALSSANKEA-LSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLEC 248

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G               E L           L+ +++    E+  ++ ++
Sbjct: 249 VANLRANLRERGSDLVVR----IGRPEEVLVELAKSIGADALYAHQEVSHEEIATEEKIK 304

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----------- 173
             L+   +   F     L     L   LQ         +  +Q L               
Sbjct: 305 SSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQLKGL 364

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE- 232
                V   ++   +     P F      A++     GE  AL  L++F  E      + 
Sbjct: 365 PTRGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVECREQPNKL 424

Query: 233 -----QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSG 277
                   +     + ++SP+L++G LSPR  +  LK+     +             + G
Sbjct: 425 GKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSSGADSGQGG 484

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
                 EL+WR+F+R +   Y S    +   P T  
Sbjct: 485 LNWLKFELLWRDFFRFITKKYGSAKKQQDASPVTAC 520


>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
 gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
          Length = 345

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 28/312 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL AA   S   VI V+   P+ + +           ++ F+   
Sbjct: 22  SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G            + +E L +         L+ +++    E+  +  + 
Sbjct: 81  VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136

Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175
             L+ + +   F     L     L         N+     KV     +A  +   Q    
Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQ 233
                      P              Q        GE                     ++
Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286
             I     +S++SP+L++G LSPR+ +  LK+                 SG    + EL+
Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQWLVFELL 316

Query: 287 WREFYRHLMAFY 298
           WR+F+R +   +
Sbjct: 317 WRDFFRFVTKKH 328


>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
 gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
          Length = 345

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 28/312 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL AA   S   VI V+   P+ + +           ++ F+   
Sbjct: 22  SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G            + +E L +         L+ +++    E+  +  + 
Sbjct: 81  VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136

Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175
             L+ + +   F     L     L         N+     KV     +A  +   Q    
Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQ 233
                      P              Q        GE                     ++
Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286
             I     +S++SP+L++G LSPR+ +  LK+                 SG    + EL+
Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQWLVFELL 316

Query: 287 WREFYRHLMAFY 298
           WR+F+R +   +
Sbjct: 317 WRDFFRFVTKKH 328


>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 571

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAF 297
             +S+LS  L++G LSPRQ +  +K E   L        G    +N L  R+++      
Sbjct: 326 SHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSPDGIAWIINHLEIRDYFLFESFL 385

Query: 298 YPSVCMGKPFIPWTEKIEW--------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
                        T             +        W  G T  P++DA M +L   G++
Sbjct: 386 NGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWTSGKTNLPLVDAGMNELIATGYI 445

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR+R    S L KDL +DWR+G E+F   L D D+A+N G WQ+ A  G D     R F
Sbjct: 446 SNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAANYGNWQYFAGVGGDPKN--RHF 503

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIV 461
               Q  R+D +G F+R W+  L +    + +  P ++ D+         PIV
Sbjct: 504 RTVSQAWRYDARGVFVRKWIDRLKDEDDIEVLLRPWAFRDEW-------APIV 549



 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----------------- 53
           L+W R DLR+ DN+ LY    ++ AK+ ++F+     +                      
Sbjct: 6   LIWHRRDLRLADNE-LY----SNAAKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVN 60

Query: 54  -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
                +  +  ++  ++ +L   G            + +E + S   + +V ++ ++   
Sbjct: 61  NGPHFTRRLLEAVHSLRNNLRDLGGDLIVRH----GNPLEIIPSLAKELQVEEVAWSEVP 116

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              E  + + L++ L             +    + +   L         +    +     
Sbjct: 117 GYYEWVQSEKLKQILMDGADEGYAHRRKIC---TSVTTTLMHPDDLPKDQPTWERLARPK 173

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
           + R    PA   +                  I P   +G  + +
Sbjct: 174 EKRKKQKPAATASVAHEERYTTHTSFNSIVDISPPRFVGMPSIM 217


>gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 160

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160


>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
          Length = 359

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 125/360 (34%), Gaps = 21/360 (5%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQKG 76
           LR+ DN  L AA  +S+A +  V+I           I A + +F+  SL  + K+L Q G
Sbjct: 3   LRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLG 61

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKS 135
                 Q     +    L  +  +  +T++  + + E      +  +++          S
Sbjct: 62  SCLLVIQ----GEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFS 117

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
                L     IL+       +       ++  L   ++    V A        P     
Sbjct: 118 LVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPGLA 177

Query: 196 FFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +D                 G Q     L        +          +  T+
Sbjct: 178 ECYRVPLPVDLKISPESLSPWRGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTT 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPY S+G LS R  + RL   +            S   +L+WREF+ + +A       
Sbjct: 238 GLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVASATPNFT 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                P   +I W KD+  L  WK   TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 296 QMAGNPICLQICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 355


>gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3]
          Length = 406

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 115/402 (28%), Positives = 179/402 (44%), Gaps = 33/402 (8%)

Query: 12  VWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  FI  
Sbjct: 2   HWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMG 61

Query: 64  SLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYNRQYE 113
           +L  +Q+SL++  I     +        SN  + +E+    C+         +  N +Y+
Sbjct: 62  ALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQ 121

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLV 170
            +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +    N  
Sbjct: 122 TDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYK 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------ILRKF 222
           ++      +  I          +  F            P  +              L+ F
Sbjct: 182 KSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKDF 241

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGA 278
              K   Y  ++D+  + GTS LS Y++ G +S R   N+  +          +K  S  
Sbjct: 242 LGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSST 301

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG PI+DA
Sbjct: 302 QNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDA 361

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            MR+L   G+++NR RMITASFL K+LL+DWR G       L
Sbjct: 362 IMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGGTLVYETL 403


>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
          Length = 140

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 2/138 (1%)

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W +D+  L  WK   TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 1   RWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGM 60

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W +++      Y RIF P   G+R DP+G +IR +LP L 
Sbjct: 61  KVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILK 119

Query: 434 NVPTQYIHAPHSWLDKND 451
           N P++YI+ P +  ++  
Sbjct: 120 NFPSKYIYEPWTASEEEQ 137


>gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 959

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              Q  +++SPY+++G LSPR+ +  L+E  +        +      L  L  R+++  +
Sbjct: 616 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 675

Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                +  +W  D  ++Q W  G TG P  DAAMR+L   G++ +
Sbjct: 676 GLRFGDRLFFSYGPHPEHTDDVPDWRHDRKVVQRWCNGLTGIPFADAAMRELVGTGFVAH 735

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN----DSVPYFR 407
             R   A  L +    DWR+G E+     LD D     G   +A S G        P   
Sbjct: 736 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAYSCGLILDDFGEPVRS 793

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
           ++       + D  G +++ WLP+L+ VP  Y+H PH   ++        L  NYP P+
Sbjct: 794 VY---YLAHQHDQTGIYVKKWLPQLSKVPPVYVHRPHVLTERMQAMHGVYLGKNYPYPL 849



 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 19/132 (14%)

Query: 17  DLRITDNKALY-------AACHNSDAK--VIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN  L        AA   +     VI V +     + Q  +       S +++ F
Sbjct: 264 DLRVHDNHLLAFASGCARAAAIKTGGPVSVIGVCVLDYRTFAQPSVVGGFFRQSPQRAQF 323

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  ++  L                   E +    ++     +    QY  +E R  
Sbjct: 324 LLDTVAALRVKLE---GTLHVPLLVRCGRPEEHVPRLAVELGAMHVLMTTQYAPHERRVQ 380

Query: 121 KLLEKRLQHRVI 132
           +L+ +RL+    
Sbjct: 381 ELMVRRLRAGTW 392


>gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin]
 gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin]
          Length = 934

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              Q  +++SPY+++G LSPR+ +  L+E  +        +      L  L  R+++  +
Sbjct: 591 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 650

Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                +  EW  D  ++Q W  G TG P  DAAMR+L   G++  
Sbjct: 651 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 710

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408
             R   A  L +    DWR+G E+     LD D     G   +A S G    D     R 
Sbjct: 711 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAHSCGLMLDDFGEPVR- 767

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
            N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NYP P+
Sbjct: 768 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 824



 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 19/132 (14%)

Query: 17  DLRITDNKALY-------AACHNSDA--KVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L        AA         VI V +     + Q          S +++ F
Sbjct: 239 DLRVHDNQLLAFASVCTKAAAEEVGGPVPVIGVCVLDYRTFAQPSAVGGFFRQSPQRAQF 298

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++   T +    QY  +E R  
Sbjct: 299 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGATVVLMTTQYAPHERRVQ 355

Query: 121 KLLEKRLQHRVI 132
            L+ +RL+    
Sbjct: 356 ALMVRRLRAGTW 367


>gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5]
 gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5]
          Length = 932

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              Q  +++SPY+++G LSPR+ +  L+E  +        +      L  L  R+++  +
Sbjct: 589 MYSQKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWM 648

Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                +  EW  D  ++Q W  G TG P  DAAMR+L   G++  
Sbjct: 649 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 708

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408
             R   A  L +    DWR+G E+     LD D     G   +A S G    D     R 
Sbjct: 709 EGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 765

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
            N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NYP P+
Sbjct: 766 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 822



 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 17  DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L  A            S   VI V +     + Q          S +++ F
Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++     +    QY  +E R  
Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353

Query: 121 KLLEKRLQHRVI 132
            L+ +RL+    
Sbjct: 354 ALMVRRLRAGTW 365


>gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 932

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              Q  +++SPY+++G LSPR+ +  L+E  +        +      L  L  R+++  +
Sbjct: 589 MYSQKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWM 648

Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                +  EW  D  ++Q W  G TG P  DAAMR+L   G++  
Sbjct: 649 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 708

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408
             R   A  L +    DWR+G E+     LD D     G   +A S G    D     R 
Sbjct: 709 EGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 765

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
            N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NYP P+
Sbjct: 766 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 822



 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 17  DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L  A            S   VI V +     + Q          S +++ F
Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++     +    QY  +E R  
Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353

Query: 121 KLLEKRLQHRVI 132
            L+ +RL+    
Sbjct: 354 ALMVRRLRAGTW 365


>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
 gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti]
          Length = 321

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS R  + +L + +  +         S   +L+WREF+       P+    
Sbjct: 131 LSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLYGQLLWREFFYCAATKNPNFDKM 188

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 189 -AGNPICVQISWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 247

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +    G + F   LLD D + N G W    S  +    +F  + P   G++ DP G 
Sbjct: 248 DLWISCEEGMKVFEELLLDADWSVNAGMWL---SCSSFFQQFFHCYCPVKFGRKADPNGD 304

Query: 424 FIRHWLPELNNVPTQ 438
           +IR +LP L  V  +
Sbjct: 305 YIRRYLPVLKEVNKK 319


>gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 235

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 88/220 (40%), Gaps = 12/220 (5%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF-YRHLMAFYPSV 301
           SQLS +   G LS R+    ++E            A                 +      
Sbjct: 25  SQLSAHFCFGTLSVREVCRNIRESGQGGAAWLDGPARRAYCRRALPFSDGLLELTMKGGR 84

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                        E ++    L  W++G TG PIIDAAMR LN  G +H  LR + A FL
Sbjct: 85  AALHWLQLPKMIREPDRGGEALMRWQEGRTGVPIIDAAMRALNGGGSLHPALRRLCADFL 144

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +    GE  F ++L D + A N+  WQ     G       R+ NP  +    DP 
Sbjct: 145 TGRLNISAAHGEACFAARLTDYEYAVNHHNWQ---QVG-------RLNNPFAESLNLDPD 194

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           G FIR  LPEL ++P   +H PH      + +  YP P V
Sbjct: 195 GRFIRRHLPELAHLPASALHTPHLAGSDVE-TNGYPPPCV 233


>gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 933

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              Q  +++SPY+++G LSPR+ +  L+E  +        +      L  L  R+++  +
Sbjct: 590 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 649

Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                +  EW  D  ++Q W  G TG P  DAAMR+L   G++  
Sbjct: 650 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 709

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408
             R   A  L +    DWR+G E+     LD D     G   +A S G    D     R 
Sbjct: 710 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 766

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
            N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NYP P+
Sbjct: 767 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGRNYPYPL 823



 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 17  DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L  A                VI V +     + Q          S +++ F
Sbjct: 238 DLRVHDNQLLAFASVCARAAAAEAGGPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 297

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++ R   +    QY  +E R  
Sbjct: 298 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELRAMDVLMTTQYAPHERRVQ 354

Query: 121 KLLEKRLQHRVI 132
            L+ +RLQ    
Sbjct: 355 ALMVRRLQAGTW 366


>gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
 gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 67/257 (26%), Gaps = 12/257 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL  
Sbjct: 3   ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ SL + G      +     D +  L         T++F N                R 
Sbjct: 61  LELSLKKLGSPLILRRSR---DMLSVLLEIAEAPGATQVFSNHLSVEGYRFDPDGDYVRR 117

Query: 128 QHRVICKSFDDSVLLPPGSIL-------NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
               + +  ++ V  P  +               Y        A  + L  +        
Sbjct: 118 WIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQASLAEMWERD 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A                                    ++       +     +RD    +
Sbjct: 178 AAMKAALANGLEEGLGETVEVAGTGGPEHERMDVPRVMVHMQRDADMSCNSSRRDQLVPE 237

Query: 241 GTSQLSPYLSIGVLSPR 257
                    +   +  R
Sbjct: 238 IVPNQFHIRAHESIMNR 254



 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+   A  
Sbjct: 105 GYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARE 164

Query: 469 H---TLNQYYA 476
               +L + + 
Sbjct: 165 RLQASLAEMWE 175


>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
          Length = 237

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 4/193 (2%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  +  L E ++ L         S   +L+WREF+       P+ 
Sbjct: 48  PTGLSPYLRFGCLSCRVFYYNLWELYMKLRRSSSPPL-SLFGQLLWREFFYTAGTNNPNF 106

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+ +   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 107 DHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 165

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL + W  G + F   LLD D + N G W W + +      +F  + P   G+R DP
Sbjct: 166 TRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 224

Query: 421 QGTFIRHWLPELN 433
            G +IR ++P+L 
Sbjct: 225 SGDYIRRYIPKLK 237


>gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
 gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 95/152 (62%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            VHLVW R+DLR+TDNKAL+ AC +  A+V A+F  TPEQW+ H ++     FI+ +LL 
Sbjct: 5   PVHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++  I         + ++ + +  YC Q  VT LF+N QY +NE RRDK + + L
Sbjct: 65  LSTSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           +++    ++ D+V +PPG+++    +M+KV+ 
Sbjct: 125 KNKTTVYTYHDNVFIPPGNVVTQQGEMFKVFY 156


>gi|213647828|ref|ZP_03377881.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 92

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 65/92 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +Q +L++KGI   +H+ ++F+ SIE + + C
Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVC 92


>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 448

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 110 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSV 168

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  +G                 +           ++ + +   +E R ++ + K
Sbjct: 169 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVSK 224

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180
            + +  V  K F  S L     +      M   Y  FR+A+    ++ ++ A      VP
Sbjct: 225 AIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVP 284

Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +  P              P        A       GE  AL  L+KF  E      +
Sbjct: 285 MKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNK 344

Query: 233 ------QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276
                 Q  I     + ++SP+L+ G LSPR  +  LK+             D      +
Sbjct: 345 AVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDA 404

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           G    + EL+WR+F+R +   Y S        P T    
Sbjct: 405 GTNWLMFELLWRDFFRFVTKKYSSAQKTSEVAPATGCTP 443


>gi|254251923|ref|ZP_04945241.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
 gi|124894532|gb|EAY68412.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
          Length = 93

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449
           A  G D+ PYFR+FNP  QG++  P G  +R W+PEL  V    +HA             
Sbjct: 2   AGCGADAAPYFRVFNPVAQGRKLGPSGAHVRRWVPELARVDDAAVHARWDASPLTLAAAG 61

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             L + YP P+VDH  A    L+ +    K+
Sbjct: 62  VRLGVVYPAPLVDHDAARRRALDAFATLPKR 92


>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
 gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
          Length = 447

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 114/327 (34%), Gaps = 39/327 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 111 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 169

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  +G                 +           ++ + +   +EVR ++ ++K
Sbjct: 170 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 225

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180
            ++   I   +     L     L   L+         +  ++      +++A      VP
Sbjct: 226 AVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 285

Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQ------NALHILRKFCKEK 226
              +  P              P        A+      GE           +       K
Sbjct: 286 MKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFAVECSMQPNK 345

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276
                 Q  I     + ++SP+L+ G LSPR  +  LK+             +      +
Sbjct: 346 ADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTPKNNDGTSDA 405

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303
           G    + EL+WR+F+R +   Y SV  
Sbjct: 406 GTNWLMFELLWRDFFRFITKKYSSVQK 432


>gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays]
 gi|194690696|gb|ACF79432.1| unknown [Zea mays]
 gi|194701496|gb|ACF84832.1| unknown [Zea mays]
          Length = 446

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  +G                 +           ++ + +   +EVR ++ ++K
Sbjct: 169 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 224

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180
            ++   I   +     L     L   L+         +  ++      +++A      VP
Sbjct: 225 AVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 284

Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFCKEK 226
              +  P   P+        P        P                             K
Sbjct: 285 MKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNK 344

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKS 276
           V     Q  I     + ++SP+L+ G LSPR  +  LK+     +              +
Sbjct: 345 VDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDA 404

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303
           G    + EL+WR+F+R +   Y SV  
Sbjct: 405 GTNWLMFELLWRDFFRFITKKYSSVQK 431


>gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 227

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 4/188 (2%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +S LSP+L+ G L+  +    L +   + L         + +EL+WREF+        S
Sbjct: 22  YSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSELLWREFFYRREVEDSS 79

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                       K+    D      W  G T +P+++A M QL   GWM NR R I AS 
Sbjct: 80  SLFRAKGTARERKL-VTFDPRGFARWCAGATDYPLVNALMHQLVESGWMSNRGRQIAASC 138

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LV ++ VDWR G  +F   LLD D ASN G WQ+ A  G D     R F+   Q ++FDP
Sbjct: 139 LVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG-GRHFDLVKQTRQFDP 197

Query: 421 QGTFIRHW 428
           +G F + W
Sbjct: 198 EGEFTQRW 205


>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
 gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
          Length = 458

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 119/322 (36%), Gaps = 32/322 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+ L +A + S + V+ V+   P ++ +           ++ F+  S
Sbjct: 128 SIVWFRNDLRVHDNECLNSANNESMS-VLPVYCFDPREYGKSSSGFDKTGPYRASFLIES 186

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++K+L  +G                 L           ++ +++   +EV+ +  +E
Sbjct: 187 VTDLRKNLQDRGSDLVVR----VGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIE 242

Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175
             ++   +   +     L     L         N+     KV+    +  I  L Q   +
Sbjct: 243 AAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGK 302

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE--- 232
                      P               A       GE  AL  L+KF  E      +   
Sbjct: 303 PSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPPKGGS 362

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWL 282
           Q  I     + ++SP+L++G +SPR  ++ LK+          +  D    P +G    +
Sbjct: 363 QDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGMNWLM 422

Query: 283 NELIWREFYRHLMAFYPSVCMG 304
            EL+WR+F+R +   Y S    
Sbjct: 423 FELLWRDFFRFITKKYSSPKKQ 444


>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
 gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 108/317 (34%), Gaps = 24/317 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A ++S + V+ V+   P  + +           +++F+  S+
Sbjct: 88  IVWFRNDLRVHDNECLNSASNDSMS-VLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 146

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ +  +E+
Sbjct: 147 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEDKIEE 202

Query: 126 RLQHRVICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            ++   +   +     L               N+     KV     +  ++ L +     
Sbjct: 203 VMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDELKGLP 262

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                     P                 +     GE  AL  L+KF  E      +  + 
Sbjct: 263 SRGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAECQAQPPKGTNG 322

Query: 237 PAI-----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                     + ++SP+L++G +SPR  ++ LK+     +    +            +  
Sbjct: 323 SHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGGGGGSGSPDTG 382

Query: 292 RHLMAFYPSVCMGKPFI 308
            + + F         FI
Sbjct: 383 MNWLMFELLWRDFFRFI 399


>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
          Length = 451

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 113 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 171

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L  +G                 +           +F + +   +E R ++ + K
Sbjct: 172 ADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSK 227

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180
            ++   I  K F  S L     +      M   Y  FR+A+    ++ ++ A      VP
Sbjct: 228 AVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKCVP 287

Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +  P              P        A+      GE  AL  L+KF  E      +
Sbjct: 288 MKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQPNK 347

Query: 233 -----QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276
                 RD       + ++SP+L+ G LSPR  +  LK+             +      +
Sbjct: 348 GDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGDGTSDA 407

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           G    + EL+WR+F+R +   Y S        P T    
Sbjct: 408 GTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCTP 446


>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
          Length = 459

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 121 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 179

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L  +G                 +           +F + +   +E R ++ + K
Sbjct: 180 ADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSK 235

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180
            ++   I  K F  S L     +      M   Y  FR+A+    ++ ++ A      VP
Sbjct: 236 AVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKCVP 295

Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +  P              P        A+      GE  AL  L+KF  E      +
Sbjct: 296 MKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQPNK 355

Query: 233 -----QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276
                 RD       + ++SP+L+ G LSPR  +  LK+             +      +
Sbjct: 356 GDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGDGTSDA 415

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           G    + EL+WR+F+R +   Y S        P T    
Sbjct: 416 GTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCTP 454


>gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
           AltName: Full=URF1
 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp.  (PCC
           6716)
 gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
          Length = 284

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 113/286 (39%), Gaps = 8/286 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +HL W R DLR+ DN  LYAA       V+ VF   P   +   ++A +  ++   L  
Sbjct: 4   PLHLFWHRRDLRLADNLGLYAA-RQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQA 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++  Q+G      Q     D  + +       + T + ++   E     RD+++   L
Sbjct: 63  LKEAYQQRGGCLLMVQ----GDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATL 118

Query: 128 QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I        LL P S +     Q Y VYTPF +        A +   P  A     
Sbjct: 119 NDLGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEAT 178

Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +    +P   D  F    + +   GE  A   L  F +  +Y Y EQR+ P   GT+ L
Sbjct: 179 EIASIPLPSTHDLGFDWSGELILAPGEAAAAQQLAHFSQHAIYEYGEQRNYPGRPGTALL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREF 290
           SP L  GV+  R  W   +           ++   +W  EL WREF
Sbjct: 239 SPALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284


>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
          Length = 446

 Score =  114 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  +G                 +           ++ + +   +EVR ++ ++K
Sbjct: 169 ADLRRSLRARGGDLVVRVGM----PEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 224

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180
            ++   I   +     L     L   L+         +  ++      +++A      VP
Sbjct: 225 AVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 284

Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFCKEK 226
              +  P   P+        P        P                             K
Sbjct: 285 MKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNK 344

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKS 276
           V     Q  I     + ++SP+L+ G LSPR  +  LK+     +              +
Sbjct: 345 VDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDA 404

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303
           G    + EL+WR+F+R +   Y SV  
Sbjct: 405 GTNWLMFELLWRDFFRFITKKYSSVQK 431


>gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays]
 gi|219888051|gb|ACL54400.1| unknown [Zea mays]
          Length = 421

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 132/386 (34%), Gaps = 28/386 (7%)

Query: 12  VWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQH---------GISARQS 58
           +W R  LR+ DN AL          + A++  VF+  P   R                + 
Sbjct: 12  MWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARI 71

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  +      + +  +       DD  + + +      + KL +    E   + 
Sbjct: 72  RFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALA 129

Query: 119 RDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           RDK +        I      S     P   I  +  +    Y  F     +    A    
Sbjct: 130 RDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAGEPPAPAMEEY 189

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEKV 227
             +P +  TG      +P   +  +  I                      +  K    K 
Sbjct: 190 SELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKESLQNKEWVAKF 249

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                         T+ LSPYL  G LS R  ++ +++    +    K    S   +L+W
Sbjct: 250 EKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKPPV-SLTGQLLW 308

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F+  +    P+    K      ++I W+++  L  AW+ G TG+P IDA M QL   G
Sbjct: 309 RDFFYTVSYGTPNFDRMK-GNKICKQIPWSENEDLFVAWRDGQTGYPWIDAIMIQLRNWG 367

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGE 373
           WMH+  R   A FL +  +     GE
Sbjct: 368 WMHHLARHSVACFLTRGDMCCRCEGE 393


>gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 166

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166


>gi|62859891|ref|NP_001017311.1| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
          Length = 241

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
             +  +L +        +        +       + ++TK
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITK 95


>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927]
 gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei]
          Length = 848

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 14/252 (5%)

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
                +             Q  S+LSPYLS G LSPR+ +  L+    + L         
Sbjct: 507 MTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQY 566

Query: 281 WLN--ELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                 L  R+++  +   Y  +   +         +  +W  D  ++Q W  G TG P 
Sbjct: 567 REALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPF 626

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
            DAAMR+L   G++ +  R      L +    DWR+G E+     +D D     G   + 
Sbjct: 627 ADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYY 686

Query: 396 AS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449
           +    +D     R  N        D  G +++ WLP+L+ +P  YIH PH   ++     
Sbjct: 687 SELVRDDFGETVR--NIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMH 744

Query: 450 -NDLSLNYPLPI 460
              L  NYP P+
Sbjct: 745 GVQLGKNYPYPL 756



 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 16  NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN     A   A       VIAV +     + Q          S  ++ F   +
Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  ++  L  +  I              + +    ++     +F   QY  +E      +
Sbjct: 274 LAALRYKLERELRIPLLVR----CGRPEDHIPRLVVECGAIDVFLTTQYTPHEKEVHNDI 329

Query: 124 EKRLQHRVI 132
            + +  R  
Sbjct: 330 VEAITQRRW 338


>gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 454

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 116/325 (35%), Gaps = 36/325 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A + S +  + V+   P  + +           ++ F+  S+
Sbjct: 121 IVWFRNDLRVHDNECLNSASNESMSM-LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 179

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L ++G                 L           ++ +R+   +EV+ ++ +E 
Sbjct: 180 SDLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 235

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------- 172
            ++   +   +     L     L   ++         K  ++ L                
Sbjct: 236 AMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 295

Query: 173 ---DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
              D+ +  +P++   G    + +P+                    L      C+ +   
Sbjct: 296 ARGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKFAAECQAQPPK 355

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----------LLIKPKSGAF 279
                 I     + ++SP+L++G LSPR  ++ +K+                 +  +G  
Sbjct: 356 GAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSGQSDTGMN 415

Query: 280 SWLNELIWREFYRHLMAFYPSVCMG 304
             + EL+WR+F+R +   Y S    
Sbjct: 416 WLMFELMWRDFFRFITKKYSSATKQ 440


>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 848

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 14/252 (5%)

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
                +             Q  S+LSPYLS G LSPR+ +  L+    + L         
Sbjct: 507 MTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQY 566

Query: 281 WLN--ELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                 L  R+++  +   Y  +   +         +  +W  D  ++Q W  G TG P 
Sbjct: 567 REALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPF 626

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
            DAAMR+L   G++ +  R      L +    DWR+G E+     +D D     G   + 
Sbjct: 627 ADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYY 686

Query: 396 AS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449
           +    +D     R  N        D  G +++ WLP+L+ +P  YIH PH   ++     
Sbjct: 687 SELVRDDFGETVR--NIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMH 744

Query: 450 -NDLSLNYPLPI 460
              L  NYP P+
Sbjct: 745 GVQLGKNYPYPL 756



 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 16  NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN     A   A       VIAV +     + Q          S  ++ F   +
Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  ++  L  +  I              + +    ++     +F   QY  +E      +
Sbjct: 274 LAALRYKLERELRIPLLVR----CGRPEDHIPRLVVECGAIDVFLTTQYAPHEKEVHNDI 329

Query: 124 EKRLQHRVI 132
            + +  R  
Sbjct: 330 VEAINQRRW 338


>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
 gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 435

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64
            +VW RNDLR+ DN+AL +A  +S   ++ V+   P  +    +        +  F++  
Sbjct: 56  SIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFEC 114

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
           +  ++ SL ++G               E L           L+ ++
Sbjct: 115 VANLRSSLRERGSDLIVR----IGKPEEVLLDLAKSVGAESLYAHQ 156


>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
 gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
          Length = 515

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 4/189 (2%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +S+ SP+L+ G LS R     L+   ++    P  G++    EL+WR+++R L     
Sbjct: 290 DFSSKFSPWLAQGALSARVALAALRRHEIEQG--PSDGSYWLWFELLWRDYFRLLHLQQG 347

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   +        +  +     W+ G TG P IDA MR+L   GW+ NR+R I AS
Sbjct: 348 RRLYRARGLNEGAAQPAHDAAAFAA-WRVGGTGHPFIDAGMRELAATGWLSNRMRQIVAS 406

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L+ DL  DWR G  +F +QL+D D+ SN G W + A  G D     R F+P  Q   +D
Sbjct: 407 YLIHDLGCDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPRG-GRRFDPDRQAAMYD 465

Query: 420 PQGTFIRHW 428
             G +   W
Sbjct: 466 ADGAYRALW 474



 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 9  VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63
          V + W RNDLR+ DN AL  AC ++  +++ V+   P      +W        +  F+ A
Sbjct: 5  VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEA 63

Query: 64 SLLQVQKSLSQKGIVFQYHQCSNF 87
          +L  +  +L  +G        +  
Sbjct: 64 ALGDLDAALRARGSALLQLNGAPR 87


>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
          Length = 447

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 32/315 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185
           +   +   +     L     L   ++         K  +Q L      +    + ++   
Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232
           G V   +IP   D            G+                     +    K      
Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQXRXSKGNQKGG 354

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                  G    + EL
Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414

Query: 286 IWREFYRHLMAFYPS 300
           +WR+F+R +   Y S
Sbjct: 415 LWRDFFRFITKKYSS 429


>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
          Length = 418

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLS 453
                Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P    +         + 
Sbjct: 261 TFYHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIG 320

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478
            +YP PIV H +A    L      +
Sbjct: 321 KDYPRPIVSHIEASQRNLALMRQVR 345



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 19/276 (6%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYAS 64
           MS   +   R  LR+ DN +L  A  +S A +  V++      +    + A +  F+  S
Sbjct: 1   MSHRTIHLFRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L   G             +   L     Q  +T++ Y+ + E    R DK ++
Sbjct: 60  LEDLDTRLQAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQ 115

Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              Q   +      S        I+        +       ++  L + +  +  V    
Sbjct: 116 TVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIED 175

Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVE 232
               VTP ++ R +  P           + ++P GE +A        +       +    
Sbjct: 176 FQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPR 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
                 +  T+ LSPYLS+G LS R  +++    F 
Sbjct: 236 TIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTRIFC 271


>gi|318041064|ref|ZP_07973020.1| DNA photolyase, FAD-binding protein [Synechococcus sp. CB0101]
          Length = 314

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMR 341
           + L W         + P + +   + P     E +        AW++G TGFPI+DAA R
Sbjct: 5   SRLRWGCAIHQRFRYLPQLELIALWSPLDTHCELSAQQEELYAAWREGRTGFPIVDAAAR 64

Query: 342 QLNTIG---WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            L   G    ++ R R I ASFL     +DWR G  ++M  L+DGD   ++  W   A  
Sbjct: 65  CLQAEGGWLELNFRSRAIYASFLSNLCGIDWRFGALHYMRHLIDGDCPIDHYQWAMQAGV 124

Query: 399 GNDS-VPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
                  + RI++P      R DP G FIR WLPEL  +    +  P +         +Y
Sbjct: 125 TYHGTKAWTRIYHPGQVAVDRCDPHGLFIRRWLPELRGLTNDQLGTPPAMA-------DY 177

Query: 457 PLPIVDHKKACHHTLNQYYAAK 478
           P P++D++ +    L      +
Sbjct: 178 PAPVLDYETSRRLRLEALEQQR 199


>gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica]
          Length = 168

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
             +  +L +        +        +       +  + K
Sbjct: 60  EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAK 95


>gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 502

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 110/264 (41%), Gaps = 41/264 (15%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS++SPYL  G +SPR  ++ LK      +         + + +  REF    +A +P +
Sbjct: 229 TSRMSPYLRFGQISPRAMYHDLKRADGKRVS------RLFWHRVHRREFAYWQLANWPDM 282

Query: 302 CMGKPFIPWTEKIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                   +  + +W  D         +L+ W++G TGFP +DA MR+L T GWMH   R
Sbjct: 283 GTKSIRRHYDRRADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMRRLWTTGWMHQTER 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN---- 410
           M+ A+FL   L V W  G  +F   L+D DLA N   WQ A  +G D      +F+    
Sbjct: 343 MLCATFLCDYLNVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLDQWD---VFSGSLA 399

Query: 411 PT--IQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKN---------DLSLN--Y 456
           P      +  DP G  I   +PEL  +P  ++ H P    D               +  Y
Sbjct: 400 PDGSKPCRAHDPLGDAIATRVPELAGLPRGHLRHRPWEASDAVLETSGVVIRGAGEDGAY 459

Query: 457 PLPI------VDHKKACHHTLNQY 474
           P  +      VD          + 
Sbjct: 460 PERMLPGVGDVD-GAGREDARARM 482


>gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii]
          Length = 274

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259
            D ++P GE +AL  L K  + + +     +           ++ LSPYLS+G LS R  
Sbjct: 51  FDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSPYLSLGCLSVRTF 110

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           +++L   +            S   +++WREF+  + +  P+    +   P   +I+W  D
Sbjct: 111 YHQLSSVYAQSKNHSLPPL-SLQGQVLWREFFYTVASSTPNFTKME-GNPICLQIQWYHD 168

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
              L+ W+   TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 169 PEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 228

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            LLD D + N G W W +++      Y RIF P   G+R DPQG +
Sbjct: 229 LLLDADYSINAGNWMWLSASAFFHK-YTRIFCPVRFGRRTDPQGQY 273


>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 642

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 86/328 (26%), Gaps = 33/328 (10%)

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
             + +++           PA             R F Y  +        G    L +  +
Sbjct: 266 WVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYYNLREHYIRLCKGCSPPLSLFGQ 325

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
               + +Y     +    +                RQ               P     S 
Sbjct: 326 LLWREFFYTAATNNPNFDRMAGNPICVQVGVHAGRRQPV----TASSWASAGPCPRNPSG 381

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
                         +F   +                 +         G  G P+      
Sbjct: 382 SGGGGGGLGQVTWWSFLLPLTPPPDPGVSRSPDPLGPEPGGFGQVGGGSDGLPLDRRHHD 441

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGE----------------------EYFMSQ 379
                G      R   A FL +  L                             + F   
Sbjct: 442 PAEAGGLDPPPARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEEL 501

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D + N G W W + +      +F+ + P   G+R DP G +IR ++P L + P +Y
Sbjct: 502 LLDADWSVNAGSWMWLSCS-AFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRY 560

Query: 440 IHAPHSWLDK------NDLSLNYPLPIV 461
           I+ P +  +         + ++YP P++
Sbjct: 561 IYEPWNAPEAVQKAANCVVGVDYPRPMI 588



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 7  MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
          M V+ + W R  LR+ DN AL  A   +D+ +  V++  P       +   +  F+  +L
Sbjct: 1  MVVNSVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEAL 59

Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
            +  SL +        +        +       
Sbjct: 60 EDLDCSLKKLNSRLFVVR----GQPTDVFPRLLK 89


>gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase
           [Arabidopsis thaliana]
 gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
 gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
 gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
 gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
          Length = 447

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 32/315 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185
           +   +   +     L     L   ++         K  +Q L      +    + ++   
Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232
           G V   +IP   D            G+                     +    K      
Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 354

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                  G    + EL
Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414

Query: 286 IWREFYRHLMAFYPS 300
           +WR+F+R +   Y S
Sbjct: 415 LWRDFFRFITKKYSS 429


>gi|213022877|ref|ZP_03337324.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 84

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 58/81 (71%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNF 87
           +Q +L++KGI   +H+ ++F
Sbjct: 61 ALQTALAEKGIPLLFHEVADF 81


>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
          Length = 457

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 33/316 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ ++ +E+
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241

Query: 126 RLQHRVICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            ++   +   +     L               N+     KV     +  I+ L Q     
Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---Q 233
                     P               A +     GE  AL  L KF  E      +    
Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAECQAQPPKGGSH 361

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----------EFVDLLIKPKSGAFSWL 282
             I     + ++SP+L++G +S R  ++ LK+                   P +G    +
Sbjct: 362 ESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGGSSSPGAGMNWLM 421

Query: 283 NELIWREFYRHLMAFY 298
            EL+WR+F+R +   Y
Sbjct: 422 FELMWRDFFRFITKKY 437


>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 107/285 (37%), Gaps = 34/285 (11%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL +A  +S   ++ V+   P+ + +           +++F+   
Sbjct: 180 SIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLEC 238

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ SL ++G                 L           L+ +++    E++ ++ + 
Sbjct: 239 VANLRSSLRERGSDLIVR----VGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEEKVA 294

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPV 179
             LQ + I   +     L     L   LQ         +  +QN+     ++A  +   +
Sbjct: 295 AALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQLKGL 354

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           PA     P +  +I      P   +      +G    L    +  +    + +E R   +
Sbjct: 355 PACGNVKPGSIPSIEVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEARSQTS 414

Query: 239 I------------------QGTSQLSPYLSIGVLSPRQCWNRLKE 265
                                + ++SP+L++G LSPR+ +  LK+
Sbjct: 415 NLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKK 459


>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 448

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 114/315 (36%), Gaps = 32/315 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 121 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 179

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 180 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAM 235

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185
           +   +  K F  S L     +      +   Y  F+  + +  ++  + +   + ++   
Sbjct: 236 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLKSLPSR 295

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232
           G V   +IP   D            G+                     +    K      
Sbjct: 296 GDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 355

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                 +G    + EL
Sbjct: 356 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGDTGLNWLMYEL 415

Query: 286 IWREFYRHLMAFYPS 300
           +WR+F+R +   Y S
Sbjct: 416 LWRDFFRFITKKYSS 430


>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
          Length = 164

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WREF+       P     +   P   +I W+K+   L  W +  TGFP IDA M 
Sbjct: 10  YGQLLWREFFYTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMT 68

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +  
Sbjct: 69  QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 128

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
               +F  + P   G+R DP G FIR +LP L   P 
Sbjct: 129 F-QQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164


>gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens]
          Length = 194

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 397 STGNDSVPYF----RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448
             G   VP+F      + P   G+R DP G +IR +LP L   P +YI+   +  +    
Sbjct: 5   GCGCLVVPFFNSFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQK 64

Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             K  + +NYP P+V+H +A    + +     +Q
Sbjct: 65  VAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQ 98


>gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula]
          Length = 308

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 10/279 (3%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P  + +   + +  +  F +  +      +   LP   I         ++   F+   
Sbjct: 30  YEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDES 89

Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           +      +   +  G  NA   L  F    +  Y   R       TS LSP+L  G +S 
Sbjct: 90  EKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSV 149

Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           R+ ++ ++ +      +     +     ++  +  RE+ R+L   +P     +P +   +
Sbjct: 150 RKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIGLREYSRYLSFNHP-YTHERPLLGHLK 208

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R++ ASF VK L + WR G
Sbjct: 209 FFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWG 268

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            +YF   LLD DL S+  GWQ+   T  D   + RI NP
Sbjct: 269 MKYFWDTLLDADLESDALGWQYITGTLPDCREFDRIDNP 307


>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
 gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
          Length = 469

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 139/438 (31%), Gaps = 28/438 (6%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A        A +I VF   P      G + R   F+   L QV
Sbjct: 28  YWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHFDFMLTGLRQV 84

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             S ++ GI F         D    L  +C    +  +  +      + +         +
Sbjct: 85  ADSAAKLGIPFVLLTGE---DPPGELAGFCRTHAIGTVVMDFDPLRTKQQWQHTFAGHWE 141

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LTG 186
              +     + V     S          +    ++ L + L             R  L  
Sbjct: 142 GECLEVDAHNVVPCRWASEKQEY-AARTIRPKLQRQLPEFLDPFPELVPHPVPWRGSLLP 200

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                   R    P       +  GE+ AL + R+F    +  Y E+R+ P     S LS
Sbjct: 201 EPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKRNDPTAGAVSGLS 260

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVC-M 303
           PYL  G ++P++     ++         +          EL     + + +         
Sbjct: 261 PYLHFGQIAPQRVALMARDANWAPAESREGFLEELVIRRELAENFCFYNPVYDCFGGLPA 320

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                    + +  +  +  + W+   T  P+ +AA +++   G MH  +RM  A  +++
Sbjct: 321 WAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQTGKMHGYMRMYWAKKILE 380

Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412
                               LDG   +   G  W+   G    P+         R  N  
Sbjct: 381 WSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIG-GVHDRPWKERPVYGKVRYMNDR 439

Query: 413 IQGKRFDPQGTFIRHWLP 430
              ++FD Q  +IR + P
Sbjct: 440 GAARKFDVQA-YIRRFFP 456


>gi|323455842|gb|EGB11710.1| hypothetical protein AURANDRAFT_6503 [Aureococcus anophagefferens]
          Length = 127

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW+ G TGFP++DAAMRQL   GWM N +R + ASFLV+ L +DWR GE +F   L+D D
Sbjct: 4   AWQLGLTGFPLVDAAMRQLWVWGWMPNYVRHVVASFLVEHLHLDWRHGEAWFHDTLVDAD 63

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            A N   WQ    +G D   +  + +P    K  DP+G ++R W PEL  +P  +IH P 
Sbjct: 64  AAINAFMWQNGGRSGMDQWNF--VMHPVHAAKNCDPEGDYVRRWCPELAALPRDHIHQPW 121

Query: 445 SWLDK 449
                
Sbjct: 122 RAPAS 126


>gi|157888634|emb|CAP09289.1| cryptochrome 3 [Danio rerio]
          Length = 89

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 7  MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
          M V+ + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL
Sbjct: 1  MVVNSVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESL 59

Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
            +  SL +        +        +       
Sbjct: 60 EDLDTSLRKLNSRLFVVR----GQPTDVFPRLFK 89


>gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis]
 gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis]
 gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis]
          Length = 557

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 133/445 (29%), Gaps = 39/445 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A   +  + + +   F   P+         R   F+   L +
Sbjct: 122 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDAT---IRHYGFMLKGLQE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F          + + L ++     +  +  +       ++  + + K L
Sbjct: 179 VAEECKELNIPFHLL----IGYAKDILPNFVKDHAIGGVVTDFSPLRVPLQWVEDVGKCL 234

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRL 184
              V     D   ++P            +         +   +      ++    P    
Sbjct: 235 PEDVPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPPVIKHPYEPKFEA 294

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                                     G     ++L+ F  E++ ++   R+ P     S 
Sbjct: 295 ETVDWDKCYKSLEVDRTVGEVEWAKPGTNAGFNVLQSFISERLKHFNSDRNNPNQNALSN 354

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G LS ++    +++          S        ++ RE   +   +  +    
Sbjct: 355 LSPWFHFGQLSVQRAILEVQKYRSKFKESVDSFVEE---AVVRRELADNFCFYNKNYDKI 411

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W +    +                 G T  P+ +AA  Q+   G MH  LRM  A
Sbjct: 412 EGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQLQMVHEGKMHGFLRMYWA 471

Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++             Y   +  LDG   +   G  W+   G     +         R
Sbjct: 472 KKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSI-CGIHDQGWAERAVFGKIR 530

Query: 408 IFNPTIQG--KRFDPQGTFIRHWLP 430
             N   QG  ++FD    F R + P
Sbjct: 531 YMN--YQGCKRKFD-VAQFERRYHP 552


>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
 gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
          Length = 470

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 141/434 (32%), Gaps = 21/434 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN AL  A    +   + V             + R   F+   L  +++
Sbjct: 30  VYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYVFLNQGLADIEE 89

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            ++++ + F   +     +S+E L        +       +      +            
Sbjct: 90  DMAERNVTFIVRR--PPGNSLEQLLEEVQAAMLIGDENPCREPERWRQVIAKRLNMPYWT 147

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       S L P    + H  +        +  + Q ++QA+                 
Sbjct: 148 IDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAEKSWPHPKGFEAFDVRHD 207

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                            F  G   A  +L+ F   K+  Y ++R+ P + GTS+LSPYL 
Sbjct: 208 VTEGWSKFDRSVKPVDSFHGGTHEAQRLLKDFVTNKLANYPKERNHPELDGTSRLSPYLH 267

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SP      +++   +     ++        + WR+   + + F P     +    W
Sbjct: 268 FGHISPLTIALAVEDAHKNKHASREACDSYLNELIAWRDMAVNFVKFVPGYDSFEAAPEW 327

Query: 311 TEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            +K                    +  T   + +AA RQ+   GWMHN +RM  A  +++ 
Sbjct: 328 AQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAGWMHNYMRMYWAKKILEW 387

Query: 365 L---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTI 413
               +  W           LDG   +   G  WA   G    P+F        R  +   
Sbjct: 388 SPSPVQAWETCVYLNDRYFLDGRDPNGYAGIAWAIG-GVHDRPWFERDIFGTIRYMSGNA 446

Query: 414 QGKRFDPQGTFIRH 427
             K+FD    +IR 
Sbjct: 447 AAKKFDAT-RYIRQ 459


>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
 gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
          Length = 443

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---------------S 54
            LVW RNDLR+ DN AL  AC  S + V+ V++  P  + + G                 
Sbjct: 44  ALVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRTG 102

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ F+  ++  +++ L   G                 L           ++   +   
Sbjct: 103 PGRARFLLEAVADLRQRLRDAGSDLVVR----LGRPEAVLKELAAAVGAGAVYCQSEVTA 158

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            E++ +  +   L              L     L   L          +  + NL    
Sbjct: 159 EEMQVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVRQ 217


>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
 gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
          Length = 462

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 134/409 (32%), Gaps = 30/409 (7%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A      ++  V+ VF          G   R   F+   L ++
Sbjct: 21  YWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCL---IEGFLGAGRRHYEFMLKGLQEL 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +++LS+K I F + +        E++               ++      +I         
Sbjct: 78  EEALSRKKIPFYFLRGDPGQKIPEFVKEYEVGTLITDFSPLRIKAEWVGKIISAIEIPFF 137

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---LVQADLRSLPVP 180
           E    + V C            +           +      L  N   L       +P  
Sbjct: 138 EVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEEFPELEPNSESLKIRSGTGMPGI 197

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             R       +  P       + +      F  GE+ A   +  F   ++  Y   R+ P
Sbjct: 198 LFRTRETEIKALFPEEISDENKDLLFEPEHFEPGEKAARKEMESFLAARLDSYNTLRNDP 257

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S LSPYL  G +S ++    +++   D   K           L+W+E   +   +
Sbjct: 258 TKNALSNLSPYLHFGQISAQRVVLEVEKAKSDPESKKAFLDEI----LVWKEIADNFCYY 313

Query: 298 YPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            P     + F  W +      + +  K  +  + ++ G T  P+ +A+  +L   G MH+
Sbjct: 314 NPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEEFEAGKTHDPLWNASQIELLRTGKMHS 373

Query: 352 RLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
            +RM  A  +++      +  E          LDG   +   G  W+  
Sbjct: 374 YMRMYWAKKILEWSESPEKALEVAICLNDRYELDGRDPNGYAGIAWSIG 422


>gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 180

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S  D   + PPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VT 189
            T
Sbjct: 179 ST 180


>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
 gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
          Length = 253

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 5/182 (2%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS R  +++L + +  +         S   +L+WREF+ +  A        
Sbjct: 67  LSPYLRFGCLSARLFYHQLADLYRKIKKSN--PPLSLQGQLLWREFF-YCAATRNPNFDR 123

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+ ++  L  W  G TG+P IDA MRQL   GW+H+  R   A FL + 
Sbjct: 124 MHNNPICVQIPWDVNAEALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRG 183

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W + +      +F ++ P   G++ DP G 
Sbjct: 184 DLWLSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFF-QQFFHLYCPVRFGRKADPSGD 242

Query: 424 FI 425
           FI
Sbjct: 243 FI 244


>gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus]
          Length = 183

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L  +  +L 
Sbjct: 1   FRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLR 59

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           +        +        +       +  + K
Sbjct: 60  KLNSRLFVIR----GQPADVFPRLFKEWNIAK 87


>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
          Length = 139

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 5   MEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 64

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 65  DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGD 123

Query: 424 FIRHWLPELNNVPTQY 439
           +IR +LP+L   P++Y
Sbjct: 124 YIRRYLPKLKGFPSRY 139


>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
          Length = 235

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYA 63
             +VW RNDLR+ DN+AL  A + S   V+ V+   P  + +           ++ F+  
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNES-ISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106
           S+  ++K+L  +G                 L     +    + 
Sbjct: 178 SISDLRKNLKARGSDLVVR----VGKPETVLVELAKKLGRMRC 216


>gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 875

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
              Q  S++SPYLS G LSPR+ +  L+    + L             L   R  Y H M
Sbjct: 537 MYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRDYWHWM 596

Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  +  P+ P  E+     +W  D  ++Q W  G TG P  DAAMR+L T G++ +
Sbjct: 597 GLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 656

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410
             R   A  L +    DWR+G E+     LD D     G + + +    +D     R  +
Sbjct: 657 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 714

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460
                   D  G +++ WLP L+ +P  YIH PH        +    L   YP P+
Sbjct: 715 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 770



 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 16  NDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L      A       VIAV +     + Q          S  ++ F   S
Sbjct: 232 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 291

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L +++ ++ +                 E +    ++   T +F   QY  +E    
Sbjct: 292 LAKLRATIEE---ELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 344


>gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1]
          Length = 884

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 145/454 (31%), Gaps = 34/454 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R TDN AL  A       D  +  VF   P+         RQ  F+   L  
Sbjct: 409 LYWMSRDQRPTDNWALLYARHLAQERDVPLRVVFCLVPKFLEAT---IRQFGFMLDGLQV 465

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+  L +K I F          + + L  +  +Q    +  +       +   K    +L
Sbjct: 466 VETHLRKKHIPFHLLT----GYAKDVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKL 521

Query: 128 QHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   +   +    +++    +          +     + L   L           +++L 
Sbjct: 522 KDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQLP 581

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V         +  +   +      G +  + +L +F  E+++ Y + R+ P +   S 
Sbjct: 582 DTVDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDALSN 641

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY   G +S ++    L+          +         ++ RE   +   +       
Sbjct: 642 LSPYYHFGQISVQRVV--LELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSV 699

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W ++          +            T   + +A+  QL   G MH  LRM  A
Sbjct: 700 EGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWA 759

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++      +  E+         LDG   +   G  W+   G     +         R
Sbjct: 760 KKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSI-CGIHDQGWGERPVFGKIR 818

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
             N     ++FD    F++ + P   N   + IH
Sbjct: 819 YMNYKGCKRKFDI-AAFVKRYPPAAKNAAREAIH 851


>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
          Length = 190

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66
           VW RNDLR+ DN+ L AA + S + V+ V+   P  + +           ++ F+  S+ 
Sbjct: 1   VWFRNDLRVHDNECLNAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
            ++K+L  +G                 L           ++ +
Sbjct: 60  DLKKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 98


>gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 871

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
              Q  S++SPYLS G LSPR+ +  L+    + L             L   R  Y H M
Sbjct: 533 MYSQRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREALLRLSRRDYWHWM 592

Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  +  P+ P  E+     +W  D  ++Q W  G TG P  DAAMR+L T G++ +
Sbjct: 593 GLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 652

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410
             R   A  L +    DWR+G E+     LD D     G + + +    +D     R  +
Sbjct: 653 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 710

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460
                   D  G +++ WLP L+ +P  YIH PH        +    L   YP P+
Sbjct: 711 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 766



 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%)

Query: 16  NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L  A           VIAV +     + Q          S  ++ F   S
Sbjct: 228 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 287

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L +++  L  +  +              E +    ++   T +F   QY  +E    
Sbjct: 288 LAKLRAKLEEELNVPLLIR----CGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 340


>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
 gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
          Length = 471

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 113/330 (34%), Gaps = 47/330 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ ++ +E+
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIR 183
            ++   +   +     L     L   L+         K  +Q L           +  + 
Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK---------------------- 221
             G V P +IP   D           I   N                             
Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQRLNKF 361

Query: 222 --FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----------EFV 268
              C+ +         I     + ++SP+L++G +S R  ++ LK+              
Sbjct: 362 AAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTISAASNHNS 421

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
                P +G    + EL+WR+F+R +   Y
Sbjct: 422 GGSSSPGAGMNWLMFELMWRDFFRFITKKY 451


>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
 gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
          Length = 230

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
             ++K+L  +G                 L           ++ +
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAH 225


>gi|242812722|ref|XP_002486016.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714355|gb|EED13778.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 356

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             V W  G E F   L+D + ASN G W W + T   S  Y+R ++P   G+R+DP G F
Sbjct: 258 CYVSWEQGVEVFQEWLIDHEEASNVGNWMWLSCTAFFSQ-YYRCYSPIAFGRRWDPNGDF 316

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           +R + PEL +   +YI+ P     K+  ++  P
Sbjct: 317 VRRYCPELKDYDKKYIYEPWRAPIKDQKNMGMP 349


>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
 gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
           DSM 2379]
          Length = 450

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 138/438 (31%), Gaps = 32/438 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A        A ++ +F   P          RQ  F+   L +
Sbjct: 23  VYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFLGAT---LRQYGFMLRGLAE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L++  I F   +     + +  L S+  + RV  +  +      +    +   +  
Sbjct: 80  TAQLLAKMNIPFYLLR----GEPVGQLCSFVERNRVGTVVTDFDPLRVKRVWREGAARLC 135

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                     + V     S               R           L   P        P
Sbjct: 136 GVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRRLLADFLHEFPPLIPHPHAWPVPFQP 195

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           + P  I           +   P  G + A   LR F  + +  Y  +R+ P   G S+LS
Sbjct: 196 LDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYGLRRNDPCCDGQSELS 255

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G L+P++       E V  L    S        ++ RE   +      +    + 
Sbjct: 256 PWLHFGQLAPQRV----ALETVRTLSGSPSSEAFLDELIVRRELSDNFCLHNQAYDRLEG 311

Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           F  W        + +  +  +  + ++   T  P+ +AA R L   G MH  LRM  A  
Sbjct: 312 FPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLLLGGKMHGYLRMYWAKK 371

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFN 410
           +++                    LDG   +   G  W+    +D            R  N
Sbjct: 372 ILEWSASPEEALAVAIRLNDRYSLDGRDPNGYAGIAWSMGGVHDRAWGERPVFGKIRYMN 431

Query: 411 PTIQGKRFDPQGTFIRHW 428
                ++FD    +IR W
Sbjct: 432 DRGCRRKFDVDA-YIRRW 448


>gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 162

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R W
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162


>gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 170

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 7/175 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +     D  +   S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRAFD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++  L  R +  ++F+ S+L  P  I+N   + Y+V+  + +A ++       
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPP 169


>gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula]
          Length = 234

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  G  NA   L +F ++ +  YVE R +     TS LSPYL  G LS R+ +  ++ + 
Sbjct: 28  WSPGWSNADKALTEFAEQHLIDYVESR-LKVGTSTSLLSPYLHFGELSVRKVFQCVQLKQ 86

Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                +  +  K     +L  +  RE+ R+L   +P     +  +   +   WN +    
Sbjct: 87  LLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP-FTHERSLLSNLKYFPWNDNQVHF 145

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+QG TG+P++DA MR+L   GW+HN++R+I +SF VK LL+ WR G +YF   LLD 
Sbjct: 146 KAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDA 205

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNP 411
           DL S+  GWQ+ + +  D+    R+ NP
Sbjct: 206 DLESDILGWQYISGSLPDAHELERLDNP 233


>gi|327342146|gb|AEA50860.1| cry1-2 [Populus tremula]
          Length = 104

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
           SL  +  SL   G      + +   DS+  L         T+LF+N 
Sbjct: 59  SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNH 102


>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
          Length = 189

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 10/166 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A + S + V+ V+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNSANNESMS-VLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  KG                 L           ++ +R+   +EV+ +  +E  L
Sbjct: 60  LRKTLQAKGSDLVVR----IGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVL 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           +   +   +     L     L   L          K  +Q L    
Sbjct: 116 KEEGVEVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKEKVQGLEVRK 161


>gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 168

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +     D  +   S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             ++  L  R +  ++F+ S+L  P  I+N   + Y+V+  + +A ++      
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPP 168


>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
          Length = 212

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66
           VW RNDLR+ DN+ L +A + S +  + V+   P  + +           ++ F+  S+ 
Sbjct: 7   VWFRNDLRVHDNECLNSASNESMSM-LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++L ++G                 L           ++ +R+   +EV+ ++ +E  
Sbjct: 66  DLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAA 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           ++   +   +     L     L   ++      
Sbjct: 122 MKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNY 154


>gi|226495065|ref|NP_001144536.1| hypothetical protein LOC100277533 [Zea mays]
 gi|195643560|gb|ACG41248.1| hypothetical protein [Zea mays]
          Length = 131

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA       V+ +FI  P  + Q+        ++  SL  + K
Sbjct: 8   VVWFRRDLRIQDNPALAAAAK--GGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLAHLGK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL   G      +    D ++  L         T++ YNR Y       D + +    
Sbjct: 66  SLELLGCPLVLIRAE--DSTLAALLECVRSISATRVVYNRLYGNCTSLSDTIFQDNCF 121


>gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula]
          Length = 177

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 6/166 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +  +   ++  L         T++ +N  Y+   + RD  ++++L
Sbjct: 62  LGQSLKSLGAELVLIKTHS---TVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118

Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
               I     +   L  P  I +     +  +  +    +   ++ 
Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEP 164


>gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica]
 gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica]
          Length = 470

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 136/443 (30%), Gaps = 35/443 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A          +   F   P          R   F+   L +
Sbjct: 38  VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGAT---IRHYDFMLRGLEE 94

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F            + L ++     +  +  +    ++  +  K ++  L
Sbjct: 95  VAEECEKLHIPFHLL----LGLPKDVLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGL 150

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
             +V     D   ++P     +      +         + + +     +   P P+    
Sbjct: 151 PKQVPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYPSNIQA 210

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  +             +      G  + L +L+ F  +++ Y+   R+ P     S 
Sbjct: 211 EPVDWNACRAGLQVDRSVKEVSWAKPGTASGLTMLQSFISQRLPYFGSDRNNPNKDALSN 270

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +++        P S A      ++ RE   +   +  +    
Sbjct: 271 LSPWFHFGQVSVQRAILEVQKHRSR---YPDSVANFVEEAVVRRELADNFCFYNKNYDKL 327

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W +                      G T  P+ +AA  Q+   G MH  LRM  A
Sbjct: 328 EGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQMVQEGKMHGFLRMYWA 387

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++         E          LDG   +   G  W+   G     +         R
Sbjct: 388 KKILEWTRSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSI-CGIHDQGWAEREIFGKIR 446

Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430
             N     ++FD    F R + P
Sbjct: 447 YMNYAGCKRKFD-VAEFERKYSP 468


>gi|323451015|gb|EGB06894.1| hypothetical protein AURANDRAFT_28788 [Aureococcus anophagefferens]
          Length = 183

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLV+ L V W  G  +F   L+D D A N   WQ A  +G D   +  + +P   
Sbjct: 1   MVVASFLVEYLRVSWVQGAAWFEETLVDMDPAINAMMWQNAGRSGIDQWNF--VMSPENA 58

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACH 468
            +  DP G F   ++PEL  +PT+++H P +            L   YPL +VD      
Sbjct: 59  SQ--DPTGKFTLRYVPELAGLPTKHLHRPWTAPAAALAKAGVALGETYPLRVVDLAAERA 116

Query: 469 HTLNQYYAAK 478
            +     A +
Sbjct: 117 LSTAAVLAMR 126


>gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni]
 gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni]
          Length = 534

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 134/437 (30%), Gaps = 29/437 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D RI DN AL  A   +   D  +  VF   P+         R   F+   L +
Sbjct: 97  VYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKFLNAT---LRHYKFMLGGLKE 153

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K      I F          + E L  +     +  +  +        +  + + K L
Sbjct: 154 VEKECRDLNIGFHLL----LGPAREELPKFVRDNDIGAVICDFAPLRVPRQWVEDVTKGL 209

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P     +      + +       L + L +  + +          
Sbjct: 210 PKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEFPVVAKHPHGKSSAK 269

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S                   G   A   L +FC  ++  +  QR+ P     S LS
Sbjct: 270 INWTSAYEMLECDKSVDEVEWAQPGYNAACRQLYEFCTRRLGKFHNQRNNPTADALSGLS 329

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VCM 303
           P+L  G +S ++C   +K          ++     +      + + +    Y S   V  
Sbjct: 330 PWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIVRRELADNFCYYNENYDSLKGVTS 389

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                    + +     + L+  +   T   + ++A  QL   G MH  LRM     +++
Sbjct: 390 WAYQSLDAHRKDPRDPCYKLEDLETARTYDDLWNSAQLQLVKEGKMHGFLRMYWGKKILE 449

Query: 364 DLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTI 413
                               LDG   +   G  W+    +D+           R  N   
Sbjct: 450 WTESPEQALEWTILLNDKYSLDGRDPNGYVGCMWSIGGIHDTAWKERPIFGKVRYMN--Y 507

Query: 414 QG--KRFDPQGTFIRHW 428
           QG  ++FD    F+  +
Sbjct: 508 QGCKRKFDVNA-FVARY 523


>gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 161

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 3   NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 62  QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R 
Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161


>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L AA + S + V+AV+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNAAHNESMS-VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           ++K+L  +G                 L           ++ +R+   
Sbjct: 60  LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 102


>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
 gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
          Length = 456

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 144/412 (34%), Gaps = 21/412 (5%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A      +   ++ VF  TP        S R  HF+   L +V
Sbjct: 20  YWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFLS---ASYRAYHFMLHGLHEV 76

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127
           ++ L    I F   +     ++   L +   +  V+ LF +      +    +++ +   
Sbjct: 77  RQGLLGLNIPFILLE----QEAPLSLPNLIKKIDVSALFTDFSPLRIKKEWVEQIKKDIA 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  + +        +   ++ + ++     +       + + +R      + L   
Sbjct: 133 IPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETLALKTA 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                + ++              G    +  L+KF K+K+  Y E R+ P     SQLSP
Sbjct: 193 APLEMLTKYHYPQKTLPLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTNNVLSQLSP 252

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G ++P++    +K+   +      S        ++ RE   +   + PS    + F
Sbjct: 253 FLHFGQIAPQRVAIVIKKHGENHESIRDSVDSFLEELIVRRELADNFCFYTPSYDCFEGF 312

Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W +K          +        + G T   + +A    +   G +H+ LRM  A  +
Sbjct: 313 PQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDILFHGKLHSWLRMYWAKKI 372

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGND-SVPYFRIF 409
           ++         +          +DG   +   G  W+    +D + P  +IF
Sbjct: 373 LEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSIGGVHDRAWPERQIF 424


>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis]
 gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis]
          Length = 204

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL     A + +     V  +FI  P       + A +  F+  +L
Sbjct: 9   VHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQTL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101
             + + L +        +    D       S+ ++ 
Sbjct: 69  HDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVEL 104


>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
 gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 138/403 (34%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++   + GI F          +++ L  +   + V  +  +        +  + + K L
Sbjct: 159 VEEQCRELGIPFHLL----LGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 215 PKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGCKK 274

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V P + P  +      +D         G + A   L +FC  ++  + ++R+ P +   S
Sbjct: 275 VKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDALS 334

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +  +   
Sbjct: 335 GLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEE---AIVRRELADNFCYYNENYDS 391

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K   PW        + +     + L+  +Q  T   + ++A  QL   G MH  LRM  
Sbjct: 392 LKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYW 451

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++      +  E   +      LDG   +   G  W+  
Sbjct: 452 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 494


>gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica]
          Length = 126

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
             + RI NP  QG +FDP G ++R WLPEL  +PT++IH P +  +        +L  NY
Sbjct: 1   REFDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNY 60

Query: 457 PLPIVDHKKACHH---TLNQYYA 476
           PLPIV+   A       L++ + 
Sbjct: 61  PLPIVEIDAAKARLQQALSEMWQ 83


>gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
          Length = 556

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 117/396 (29%), Gaps = 18/396 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN AL  A   + A+ + +   F   P          RQ  F+   L +
Sbjct: 111 LYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATY---RQYAFMLKGLQE 167

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K      I F         +  + L S+  + +   +  +       ++  + ++K L
Sbjct: 168 VAKECKSLDIQFHLLS----GEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHL 223

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P            +        L+   +         P       
Sbjct: 224 PADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHPHSASRAA 283

Query: 188 VTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                         +           G    +++L  F  +++  +   R+ P     S 
Sbjct: 284 EPVDWEEVLSSLEVERSVGEVDWAQPGTSGGMNMLESFIDQRLRLFATHRNNPNYDALSH 343

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVC 302
           LSP++  G LS ++   ++K E               +         FY           
Sbjct: 344 LSPWIHTGQLSAQRVVKQVKREKNASESVASFIEELVVRRELADNFCFYNPSYDNISGAY 403

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                       +  +  +  +  +   T   + +AA RQL + G MH  LRM  A  ++
Sbjct: 404 DWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKKIL 463

Query: 363 KDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQWA 395
           +                    LDG   +   G  W+
Sbjct: 464 EWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWS 499


>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
          Length = 189

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L AA + S + V+AV+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNAAHNESMS-VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           ++K+L  +G                 L           ++ +R+   
Sbjct: 60  LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 102


>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
 gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
          Length = 540

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 137/403 (33%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++     GI F          +++ L  +   + V  +  +        +  + + K L
Sbjct: 159 VEEQCRDLGIPFHLL----LGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 215 PKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGCKK 274

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V P + P  +      +D         G + A   L +FC  ++  + ++R+ P +   S
Sbjct: 275 VKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDALS 334

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +  +   
Sbjct: 335 GLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEE---AIVRRELADNFCYYNENYDS 391

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K   PW        + +     + L+  +Q  T   + ++A  QL   G MH  LRM  
Sbjct: 392 LKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYW 451

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++      +  E   +      LDG   +   G  W+  
Sbjct: 452 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 494


>gi|327342140|gb|AEA50857.1| cry1-1 [Populus tremula]
          Length = 104

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
           SL  +  SL   G      + +   DS+  L         T+L +N 
Sbjct: 59  SLGHLDSSLRSLGTSLVTKRST---DSVSTLLEVVKSTGATQLLFNH 102


>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
          Length = 661

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 41/218 (18%)

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
               L  L  R+F+                I     +EW +D  L + W QG TG P +D
Sbjct: 427 WRWLLMHLAIRDFFVFTAVKEGDALEAPGGIRG-RAVEWRRDDELFRRWAQGQTGLPFVD 485

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MR+L   G+M NR R         +L +DWR+G  YF S L D + A N G W + A 
Sbjct: 486 ACMRELGATGFMSNRGRQ-------NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAG 538

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH---------------- 441
           TG+D  P  R F    QG+R+DP+   I+ W+P+L  +    +                 
Sbjct: 539 TGSD--PRDRRFKTVSQGERYDPEARLIQAWVPQLAALRPAQLAHQPWAAPPAALAAAGV 596

Query: 442 ----APHSWLDKND-----------LSLNYPLPIVDHK 464
                P +   +             L   YPLP+VD  
Sbjct: 597 RLGCEPQAATAEAGTERQEQQKQQQLGGWYPLPVVDPA 634



 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 21/98 (21%)

Query: 10  HLVWLRNDLRITDNKALYAACH-------NSDAK-VIAVFIATPEQWRQ----------- 50
            L+W RNDLR+ D++ L++A            +  ++  +     +              
Sbjct: 37  ALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAGELPQEGGL 96

Query: 51  --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
               +   +   +  +   ++ +L + G      Q   
Sbjct: 97  DIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRP 134


>gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 448

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 137/435 (31%), Gaps = 28/435 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A      ++  +  VF  + +         R   F+   L +
Sbjct: 27  VYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLSRDFIGAP---IRHYDFMLRGLTE 83

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K LS+  + F+        +  E L  Y  ++    L  +     ++    + + + L
Sbjct: 84  TAKELSKLNVSFKI----PLGEPKEKLPLYAKKRDPAVLVTDFSPLRHQKGWIESVYEYL 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D   ++P     +      +   P      Q  + A      +P       
Sbjct: 140 --SCPIDQVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFLTAFPEMKKLPYEDRETD 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             PS      D     ++   P G       LR F    +  Y   R+ P + GTS+LSP
Sbjct: 198 RVPSTEELRLDGSVLPVEGEIP-GSAAGEMRLRSFIARGLSGYDRDRNDPNLDGTSRLSP 256

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y+  G +S +      +    DL         + +   +   F  +   +     + +  
Sbjct: 257 YIHFGQISAQTVVR--EAFLADLPGSDAFVEEAMVRRELAENFCLYEPLYDRYEALPEWG 314

Query: 308 IPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               +    +K   L      ++  T   + +AA   L   G +H  LRM     L+   
Sbjct: 315 RKALDHHRSDKRPWLYGLSELEEAGTHDELWNAAQLSLRRKGRIHGYLRMYWGKMLLLWS 374

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGND-SVPYFRIFNPTIQ------G 415
                             LDG   +   G  W     +D   P   +F            
Sbjct: 375 PSPEEAFSRALYLNDRYALDGRDPNGYTGVAWCIGGLHDRPWPKRPVFGSVRSMALSGCA 434

Query: 416 KRFDPQGTFIRHWLP 430
           ++FD +  +I  ++P
Sbjct: 435 RKFDVK-RYIASFVP 448


>gi|87304172|ref|ZP_01086694.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87281427|gb|EAQ73501.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 180

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           L W   DLR+ DN +L AA  +    ++ +++  P  +     +   +   +  F++ SL
Sbjct: 4   LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++SL   G          F +    +        + ++  +R     E  + + ++ 
Sbjct: 62  MALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKD 117

Query: 126 RLQHRVICKS 135
           RL   V  + 
Sbjct: 118 RLPKAVFQQF 127


>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
 gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           chlorochromatii CaD3]
          Length = 459

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           V + W+  D R+  N AL  A          ++ VF   P          R    ++  L
Sbjct: 23  VVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLAPSFLGAP---LRHYDVLFNGL 79

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +V+  L    I F   Q     +  E L  Y +    + +  +             + +
Sbjct: 80  QEVETELRALNIPFMVLQ----GEPSEELPRYAMHHNASMVVADYSPLHLTRCWKNQVAE 135

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L   V     D   ++P            +   P    L+   +        +P     
Sbjct: 136 AL--SVPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFLTPFPELEALPQPLTE 193

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV    +   F          +   GE  A   L+ F ++K+  Y  QR+ P+++ TS+
Sbjct: 194 PPVNWQKLRSHFHADASVAPVGWLTAGEAGAHATLQCFVQQKLNGYATQRNDPSLEATSR 253

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +S +    ++K        K           ++ RE   +   +  S    
Sbjct: 254 LSPYLHFGQISTQFVALQVKAAHAPQEDKDAFLEEL----IVRRELSDNYCHYNASYDRL 309

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W          +     +  +A++Q  T  P+ +AA  +L   G +H  +RM  A
Sbjct: 310 SGIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPLWNAAQHELLQSGIIHGYMRMYWA 369

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++         E          LDG   +   G  W+   G    P+         R
Sbjct: 370 KKILEWSRTPEEAFEIALWLNDRYALDGREPNGYVGVAWSIG-GVHDRPWRERPVYGTIR 428

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
             N     ++FD     ++ ++
Sbjct: 429 YMNANGCARKFD-----VKRYI 445


>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
 gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
          Length = 479

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 141/435 (32%), Gaps = 21/435 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN AL  A   +D   + V             + R  HF+   LL V+ 
Sbjct: 35  VYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVEN 94

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI F           +++         +      R  E       K +E      
Sbjct: 95  DLAERGIGFVLRNAPEC-SPVQFFADAHAAIVIGDENPLRAMERWRSMVAKNIEVPYWTI 153

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLTGPVT 189
                    +L              K + P    L++++   A  +    P       ++
Sbjct: 154 DTDVIVPSKLLEKAQYAARTIRPRLKKFLPEFLHLVKSIDNSAPAKEWQQPRGLRHDKLS 213

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                ++ D     +      G   A +       + +  Y  +R+ P   GTS LSP+L
Sbjct: 214 IDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTKNLGNYDRERNHPETDGTSMLSPFL 273

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G + P      +++          SG       + WRE   + + + P+        P
Sbjct: 274 HFGHIGPLTIALAVRKAIQTNPAAKVSGEAYLDQLITWRELCINFVKYEPNYDTAACADP 333

Query: 310 WTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           W +                 +  ++  T   + +A+ RQ+   GWMHN +RM  A  +++
Sbjct: 334 WAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYRGWMHNYMRMYWAKKILE 393

Query: 364 D---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412
               + V +           LDG   +  G   W A  G     +         R  +  
Sbjct: 394 WSPSVDVAFERAVHLNDRYFLDGRDPNGYGSIAW-ALVGKFDRAWGERPIFGKIRYMSGA 452

Query: 413 IQGKRFDPQGTFIRH 427
             G++FD +  +I  
Sbjct: 453 STGRKFDSK-KYIAQ 466


>gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis]
 gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis]
          Length = 530

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 138/443 (31%), Gaps = 39/443 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 92  LYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---LRHYKFMLGGLQE 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++   +  I FQ         + E L  +   + +  +  +        +    + K L
Sbjct: 149 VEQQCHELNISFQLL----LGPAAERLPEFVTAEDIGAVICDFAPLRLPRQWVADVVKAL 204

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P            + +       L + L +               
Sbjct: 205 PGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEFLSEFPPVIRHPHGKGQAK 264

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             T            + +D       G       L +FC  ++ ++ E+R+ P     S 
Sbjct: 265 ESTDWTAAYALLSCDKTVDAVDWAKPGYTAGCRQLYEFCTRRLRHFNEKRNDPTADALSG 324

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +S ++C   ++           +        ++ RE   +   +       
Sbjct: 325 LSPWLHFGQISAQRCILEVQRYSAMHKASADAFCEE---AIVRRELADNFCYYNEHYDSL 381

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W        + +     + L+  +Q  T   + ++A  QL   G MH  LRM  A
Sbjct: 382 KGLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYDDLWNSAQLQLVKEGKMHGFLRMYWA 441

Query: 359 SFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++                    LDG   +   G  W+   G     +         R
Sbjct: 442 KKILEWTETPELALEYSILLNDKYSLDGRDPNGYVGCMWSIG-GVHDQGWKERDIFGKIR 500

Query: 408 IFNPTIQG--KRFDPQGTFIRHW 428
             N   QG  ++FD    F+  +
Sbjct: 501 YMN--YQGCKRKFDINA-FVMRY 520


>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
          nagariensis]
 gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
          nagariensis]
          Length = 97

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
           ++W RNDLR+ DN  L  AC      V+ V++  P  + +           ++ FI  +
Sbjct: 7  AVMWFRNDLRLHDNPVLDRACREG-TSVLPVYVLDPRDYGKGPNGFGRTGPTRAQFIMDA 65

Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
          +  ++  L   G               E +     
Sbjct: 66 VQDLRSRLRAAGSDLIVR----MGHPEEVVPELAR 96


>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
 gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
          Length = 462

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 147/447 (32%), Gaps = 38/447 (8%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A      +D  V  VF    +         RQ  F+   L +V
Sbjct: 21  YWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAI---RRQYEFMLKGLQEV 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-------- 120
           + +L++K I F + Q     D  E +  +  +  +  L  +      +            
Sbjct: 78  EATLARKKIPFFFLQ----GDPEEKIPDFIEKYGIGTLITDFSPLRIKRTWTEKVASSIK 133

Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
               E    + V C            +     L++   +      L  NL   ++     
Sbjct: 134 VPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTEYPELETNLEFPEIAVRSG 193

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQ 233
            A R +         R      +      P       GE  A  ++ +F   K+  Y   
Sbjct: 194 KAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFLTNKLDSYSSL 253

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R+ P     S LSPYL  G +S ++   ++++   DL  K        + + +   F  +
Sbjct: 254 RNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESKRVFLDELLVRKELADNFCYY 313

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +                   ++ SH+      + G T  P+ +A+  +L   G MH+
Sbjct: 314 NPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLWNASQIELIRKGKMHS 373

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV----- 403
            +RM  A  +++      +  E          LDG   +   G  W+    +D       
Sbjct: 374 YMRMYWAKKILEWSESPEKALETAIYLNDKYELDGRDPNGYAGIAWSIGGVHDRAWQERE 433

Query: 404 --PYFRIFNPTIQGKRFDPQGTFIRHW 428
                R  +     ++FD + ++I  +
Sbjct: 434 IFGKIRYMSYEGSKRKFDVK-SYIDKY 459


>gi|8134633|sp|Q28811|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus]
          Length = 532

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 121/400 (30%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A          +   F   P          R   F+   L +
Sbjct: 100 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGAT---IRHYDFMLRGLEE 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F            + L ++     +  +  +    ++  +  K ++  L
Sbjct: 157 VAEECEKLCIPFHLL----LGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDAL 212

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
             +V     D   ++P     +      +         + + +     +   P  +    
Sbjct: 213 PRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYTSNVQA 272

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  +             +      G  + L +L+ F  E++ Y+   R+ P     S 
Sbjct: 273 EPVDWNGCRAGLQVDRSVKEVSWAKPGTASGLTMLQSFIAERLPYFGSDRNNPNKDALSN 332

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +++        P S        ++ RE   +   +  +    
Sbjct: 333 LSPWFHFGQVSVQRAILEVQKHRSR---YPDSVTNFVEEAVVRRELADNFCFYNKNYDKL 389

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W +                      G T  P+ +AA  Q    G MH  LRM  A
Sbjct: 390 EGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQTVKEGKMHGFLRMYWA 449

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +++         E          LDG   +   G  W+
Sbjct: 450 KKILEWTRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWS 489


>gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula]
          Length = 226

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           QG +FDP+G ++R WLPEL  +P ++IH P             +L +NYP PI+D   A 
Sbjct: 2   QGSKFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLAR 61

Query: 468 HH---TLNQYYAA 477
                 + + +  
Sbjct: 62  ERLMEAIFKMWEM 74


>gi|41055064|ref|NP_957358.1| hypothetical protein LOC394039 [Danio rerio]
 gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio]
          Length = 516

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 134/437 (30%), Gaps = 28/437 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D RI DN AL  +   + A+ + +   F   P+         RQ  F+   L +
Sbjct: 74  LYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATY---RQYAFMLKGLQE 130

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K      I F         + +  L ++     +  +  +       ++    ++K L
Sbjct: 131 VVKECKSLDIEFHLLS----GEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHL 186

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPVPAIRLT 185
              +     D   ++P            +         +Q  +     + + P  A R  
Sbjct: 187 PSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAA 246

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             +    +    +      +      G    + +L  F  ++++ +   R+ P     S 
Sbjct: 247 KIIDWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPNSDAVSH 306

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVC 302
           LSP++  G LS ++   ++K +               +         FY           
Sbjct: 307 LSPWIHAGQLSAQRVVMQVKRKKNASESVASFIEEIVVRRELADNFCFYNQNYDNISGAY 366

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                       +  +  +  +  +   T   + +AA RQL   G MH  LRM  A  ++
Sbjct: 367 DWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMYWAKKIL 426

Query: 363 KDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNP 411
           +                    LDG   +   G  W+   G     +         R  N 
Sbjct: 427 EWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSI-CGIHDQGWAERPIFGKIRYMNY 485

Query: 412 TIQGKRFDPQGTFIRHW 428
               ++FD +  F R +
Sbjct: 486 AGCKRKFDVE-QFERKY 501


>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
          Length = 188

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68
            RNDLR+ DN+ L AA + S + V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNECLXAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           +K+L  +G                 L           ++ +
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 96


>gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis]
 gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis]
          Length = 538

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 144/442 (32%), Gaps = 37/442 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 100 VYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---LRHYKFMLGGLQE 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++   +  + F          ++E L  +   +++  +  +        +  + + K L
Sbjct: 157 VEQQCRELNVSFHLL----LGPAVERLPQFVKDEKIGAVICDFAPLRLPRQWVEDVVKAL 212

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P     +      + +       L + L +               
Sbjct: 213 PAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEYLTEFPPLIKHAYGNVKGS 272

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          +++D       G   A   L  FC  ++ ++ ++R+ P     S 
Sbjct: 273 RSVDWTAAYEMLSCDKSVDAVEWAKPGYTAACRQLYDFCTRRLRHFNDKRNDPMADALSG 332

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +S ++C     E      I  +S    +   ++ RE   +   +       
Sbjct: 333 LSPWLHFGQISAQRCV---LEVGRYKTIYKESVEAYFEEAIVRRELADNFCYYNEHYDSL 389

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W        + +     + L+  +   T   + ++A  QL   G MH  LRM  A
Sbjct: 390 KGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 449

Query: 359 SFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
             +++      +  E          LDG   +   G  W+    +D            R 
Sbjct: 450 KKILEWTETPEQALEYSILLNDKYSLDGRDPNGYVGCMWSIGGIHDQGWKERAIFGKIRY 509

Query: 409 FNPTIQG--KRFDPQGTFIRHW 428
            N   QG  ++FD    ++  +
Sbjct: 510 MN--YQGCKRKFDVNA-YVMRY 528


>gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 524

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +S+LS +L++G++SPR       E           GA    + L  R+F+ +L     
Sbjct: 343 NNSSRLSTFLALGIISPRTVHAITAE--------GGEGARWLCSHLTMRDFFIYLCFASG 394

Query: 300 SVCMGKPFIP--------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           S    +  +P                +     + W QG+TG P+IDA MR+L   G+  N
Sbjct: 395 SRLYQQEGLPVNAKRKNIPWYSPAAPQKYDCWRRWAQGFTGLPLIDAGMRELCQTGYCSN 454

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R   AS L +DL +DWR G E     L D  +A+N G W + +  G D  P  R F  
Sbjct: 455 RVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANWGNWLYFSGVGPD--PKSRHFRS 512

Query: 412 TIQGKRFDPQG 422
             Q  R+DP+ 
Sbjct: 513 VSQALRYDPEA 523



 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 47/172 (27%), Gaps = 24/172 (13%)

Query: 13  WLRNDLRITDNKALYA--------ACHNSDAKVIAVFIAT-------PEQWRQHG----- 52
           W R DLR+ DN  LY            N    +I++++         P            
Sbjct: 15  WHRRDLRLADNP-LYHPNANDCNKLTVNDSQNIISLYVFDQGDFSLTPSVTGDPNWTVAR 73

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
                + ++  +++ +++SL   G               + +      + VT++ +N   
Sbjct: 74  TGPHAARYLRRAVVDLRRSLRSIGGELLVRIGDPRLIVPQVVKEL---RDVTEVTWNEDP 130

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
            + E      +   L  +            P     +     Y         
Sbjct: 131 GVYERNTSDNVRNELFFQQPLVRITTVASTPLYHPDDLPRSKYDWDRLAHPK 182


>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
          Length = 187

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68
            RNDLR+ DN+ L AA + S + V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNECLNAANNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           +K+L  +G                 L           ++ +R+   
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 101


>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
          Length = 450

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 128/437 (29%), Gaps = 30/437 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L W+  + R+ DN  L  A   +  +  ++ VF   P          RQ  F+ + L QV
Sbjct: 22  LYWMSREQRVRDNWGLLHAREMAGQEHALVVVFCLAPAFLGAT---LRQYDFMLSGLAQV 78

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+  GI F   Q     D  + +     +     +  +      +          L 
Sbjct: 79  EGDLAALGIPFVLLQ----GDPGQEIPRLAAELGAGGVVTDFDPLRVKQGWQGAAAHALP 134

Query: 129 HRVICKSFDDSVLLPPGSILNHAL---QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              I     + V     S            K++    + L +        +   P     
Sbjct: 135 VSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPLEPQVAPAPPCAATA 194

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  +                 GE  A   L +F  ++++ Y  QR+ P   GTS+L
Sbjct: 195 RAAHWGEVRAGLAVDGAVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRNDPNADGTSRL 254

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----PSV 301
           S Y   G L+P++                         EL       +         P+ 
Sbjct: 255 SAYFHFGQLAPQRAALAAAASGRGEGQAAYLEELVVRRELADNFCLHNPQYDSLAGAPAW 314

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +        +             ++Q  TG  + +AA  +L   G+MH  +RM  A  +
Sbjct: 315 ALKTLGEHRADPRAHCYTRET---FEQARTGSRLWNAAQNELRQTGFMHGYMRMFWAKKI 371

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA-ASTGNDSVPYFRIFNPTIQG-- 415
           ++                    LDG   +   G  W+ A   +       +F        
Sbjct: 372 LEWSATPEEAHATALALNDRYQLDGRDPNGYVGILWSLAGLHDRPWQTRPVFGSVRFMNE 431

Query: 416 ----KRFDPQGTFIRHW 428
               ++FD    +I  W
Sbjct: 432 NGCRRKFDVD-KYIERW 447


>gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 781

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 10  HLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           H+VW R  DLR+ D+  L  A   +   VI +F+  P +      S  ++  ++ +++ +
Sbjct: 374 HIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGTPSDARA--LHEAVVAL 431

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL   G            D    + S       T L   R+ E   V   +     L+
Sbjct: 432 RASLRALGSDLVVR----VGDPSMEMPSVAAALGATSLAAARELEWARVAGWRETLAALR 487

Query: 129 HRVICKSFDD 138
              +      
Sbjct: 488 AAGVKCDTWH 497


>gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum
           TLS]
 gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum
           TLS]
          Length = 459

 Score = 97.6 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 123/400 (30%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N AL  AC  ++     +  VF  +P          R   F++  L +
Sbjct: 26  IYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAPM---RHYDFMFRGLRE 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+  L + G+ F       + +  E L  Y  ++    +  +             + ++L
Sbjct: 83  VETRLRELGVPFTVL----YGEPGETLPKYTEKRNAGVVVADFSPLKLVRGWKLAVAQQL 138

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +    +++    +          +         + L       L      L  P
Sbjct: 139 -SCAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPELRHQPDTLPPP 197

Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V  + +             P    GE  A   LR F   ++  Y ++R+ P     S LS
Sbjct: 198 VQWNAMETLLKVDRSIKAVPGLEPGETAAEARLRSFVTGRLSRYADERNDPNSGAVSGLS 257

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS          E         +         I RE   +   +         
Sbjct: 258 PYLHFGQLSA----QHATFEAARSKASEVNREAFVEELFIRRELSENYCYYNERYDSFDG 313

Query: 307 FIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W +K           A      +++  T  P+ +AA  QL   G +H  +RM  A  
Sbjct: 314 IPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPLWNAAQTQLLETGIIHGYMRMYWAKK 373

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           +++         +   M      LDG   +   G  W+  
Sbjct: 374 ILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIG 413


>gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis
           carolinensis]
          Length = 535

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 139/443 (31%), Gaps = 35/443 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A       +  +   F   P+         RQ  F+   L +
Sbjct: 100 LYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFLEAT---IRQFGFMLKGLKE 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F          + + L  +  +  +  +  +       ++  + +++RL
Sbjct: 157 VAEECQELSIPFHLL----IGFAKDTLPPFVAKHNIAGVVTDFAPLRVPMQWVQEVQERL 212

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
              V     D   ++P            +         +   +     +   P  A    
Sbjct: 213 PPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPVIQHPHQAASQA 272

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+         +      +      G    L +L +F +E++ ++   R+ P     S 
Sbjct: 273 EPIDWDACSASLEVDRSVPEVEWAKPGSAAGLLVLGEFVQERLKFFSSDRNNPNRAALSN 332

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +++         ++        LI RE   +   + P+    
Sbjct: 333 LSPWFHFGQVSVQRAILEVRKHRTRCRESVEAFIEE---ALIRRELADNFCFYNPNYDKV 389

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W +       +             +G T   + +AA  Q+   G MH  LRM  A
Sbjct: 390 EGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQLQMVHEGKMHGFLRMYWA 449

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++         +          LDG   +   G  W +  G     +         R
Sbjct: 450 KKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYVGCMW-SVCGIHDQGWAERAVFGKIR 508

Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430
             N     K+FD  G F R + P
Sbjct: 509 YMNYAGCTKKFD-VGQFERKYNP 530


>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
          Length = 170

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68
            RNDLR+ DN++L AA + S + V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNESLNAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           +K+L  +G                 L           ++ +
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 96


>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
 gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
          Length = 530

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 142/442 (32%), Gaps = 37/442 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 92  VYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCLVPKFLNAT---LRHYMFMLGGLQE 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I FQ         ++E L ++ + + +  +  +        +    + K L
Sbjct: 149 VEQQCRDLNISFQLL----LGPAVERLPAFVVAEEIGAVVCDFAPLRLPRQWVTDVVKAL 204

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P            + +       L + L +               
Sbjct: 205 PRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLSEYLTEFPPVIKHPHGNGQKD 264

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          +++D       G       L +FC  ++ Y+ E+R+ P     S 
Sbjct: 265 KPVDWAAAEALLTCDRSVDVVDWAKPGYTAGSRQLYEFCTRRLRYFDEKRNDPTADALSG 324

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +S ++C   ++           +        ++ RE   +   +       
Sbjct: 325 LSPWLHFGQISAQRCALEVQRYTSMHKASADAFCEE---AIVRRELADNFCYYNEHYDSL 381

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W        + +     + L+  +Q  T   + ++A  QL   G MH  LRM  A
Sbjct: 382 KGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 441

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
             +++         E   +      LDG   +   G  W+    +D            R 
Sbjct: 442 KKILEWTATPELALEYCILLNDKYSLDGRDPNGYVGCMWSIGGLHDQGWRERAIFGKIRF 501

Query: 409 FNPTIQG--KRFDPQGTFIRHW 428
            N   QG  ++FD    ++  W
Sbjct: 502 MN--YQGCKRKFDVNA-YVMRW 520


>gi|302847741|ref|XP_002955404.1| cryptochrome [Volvox carteri f. nagariensis]
 gi|300259246|gb|EFJ43475.1| cryptochrome [Volvox carteri f. nagariensis]
          Length = 738

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 75/212 (35%), Gaps = 37/212 (17%)

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
              R    +    +   +        L  R+F+           + +  I     + W  
Sbjct: 538 IRARCTCRWSSSSVPAPAECDWLAMHLCIRDFFIFTTLKEGDAVLDERGI-MGLPVSWRN 596

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D      W QG TG P +DA MR+L   GWM NR R   AS L KDL VDWR G E F S
Sbjct: 597 DMETFTRWAQGRTGLPFVDANMRELAVTGWMSNRGRQNVASLLTKDLGVDWRWGAELFES 656

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            L+D D+A N   W + A  GND     R F    Q                        
Sbjct: 657 LLVDCDVAVNYCNWNYFAGIGNDPRN--RHFKTVTQ------------------------ 690

Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHK 464
               P +   +        L  +YP P+VD  
Sbjct: 691 ----PWAMTAEEAEQYSFVLGRDYPFPLVDPA 718


>gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 179

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T   + L W R+DLR+TDN AL  A  +    V+ +FI   E      + A  + +
Sbjct: 1   MVSPTPQPLALAWFRDDLRLTDNAALTWAAQH--GHVVGLFIFE-EIDAARPLGAAAAWW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S+ ++   L+Q+G+           D  E +     +   T + +NR+Y +     D
Sbjct: 58  QRESVRKLHADLAQRGVHLIIEH----GDPREIIPRIAAELGATAVTWNRRYHLLFRDVD 113

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L++ L       S    +L  P ++   +   ++V+TP+ KA    L+ A       P
Sbjct: 114 AELKRTLAQSCEVTSHPGYLLNEPWTVQTGSGTPFRVFTPYGKASQSMLIDAPPTPSLSP 173


>gi|163840007|ref|YP_001624412.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953483|gb|ABY22998.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 230

 Score = 96.4 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 13/201 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VWLR++LR+TDN AL  AC      V+  ++          +      +++ SL  +   
Sbjct: 21  VWLRDNLRLTDNPALAKACATGPTAVL--YVLDEVSEGIRPLGGATRWWLHHSLQNLAAE 78

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           +++ G      +     ++ E +     +     +F+NR+Y   E   D  L+  L    
Sbjct: 79  IAELGGSLILRR----GNAAEIVPEVAQKTGAEAVFWNRRYGGAERAIDSELKSALTKAD 134

Query: 132 ICKSFDD-------SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                           + P G+    +   YKV+TPF +A  ++       +       L
Sbjct: 135 FTVQSFQANLLFEPWTIQPKGAGPAESSAHYKVFTPFWRACQESAEPRQPLTRIESFAGL 194

Query: 185 TGPVTPSNIPRFFDYPFQAID 205
           T P    +             
Sbjct: 195 TAPSDVLDDWGLLPSKPDWSH 215


>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
 gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
          Length = 464

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 135/414 (32%), Gaps = 38/414 (9%)

Query: 11  LVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL    A    ++  V+ VF  T E         RQ  F+   L +
Sbjct: 22  VYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-------- 119
           ++ SLS+K I   + +     D  E +  +        L  +      + +         
Sbjct: 79  LEVSLSRKKIPSFFLR----GDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI 134

Query: 120 -DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                E    + V C            +       +   +      L  N V  +L +  
Sbjct: 135 SIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGA 194

Query: 179 VPAIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                L+                  +         F  GE+ A  ++  F  +++  Y  
Sbjct: 195 GMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGA 254

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+ P     S LSPYL  G +S ++    +++   +   K           LIW+E   
Sbjct: 255 LRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEI----LIWKEISD 310

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTI 346
           +   + P     + F  W ++      + +         ++ G T  P+ +A+  +L + 
Sbjct: 311 NFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLST 370

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
           G MH  +RM  A  +++      +  E          LDG   +   G  W+  
Sbjct: 371 GKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIG 424


>gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis]
 gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis]
          Length = 159

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W R DLR+ DN AL  A  N+D     VF+     +     S  +  F+   L  +  S
Sbjct: 10  HWFRKDLRLHDNPALKDALDNAD-CFYGVFVL--SNFHPSITSGNRWKFLLQCLQDLNNS 66

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           L + G              +E         +VTKL + 
Sbjct: 67  LEELGSKLIILT----GSPVEIFPKLLHSLKVTKLTFE 100


>gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 341

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-REFYRHLM 295
              Q  S++SPYLS G LSPR+ +  L+    + L             L   R  Y H M
Sbjct: 3   MYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRDYWHWM 62

Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  +  P+ P  E+     +W  D  ++Q W  G TG P  DAAMR+L T G++ +
Sbjct: 63  GLRYGTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 122

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410
             R   A  L +    DWR+G E+     LD D     G + + +    +D     R  +
Sbjct: 123 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 180

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460
                   D  G +++ WLP L+ +P  YIH PH        +    L   YP P+
Sbjct: 181 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 236


>gi|167837240|ref|ZP_02464123.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis
           MSMB43]
          Length = 148

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
                        ++   ++L+EL WREF       +P +   +      + + W  D  
Sbjct: 1   MAFRRGRAHRAATQADLDTFLSELGWREFCWAQPYRFPDLPR-RSLRHTLDGMPWRDDPA 59

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L AW++G TG+P +DA MR+L   G MHNR R +  SFLVK LL+DWR+G+ +F   L+
Sbjct: 60  ALAAWRRGATGYPFVDAGMRELRATGGMHNRARTVCTSFLVKHLLIDWRVGDAWFRDTLV 119

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           D D                 + PYFRIFNP  QG+RFDP G ++R 
Sbjct: 120 DAD-----------------AAPYFRIFNPVAQGRRFDPDGAYVRR 148


>gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica]
          Length = 361

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 96/287 (33%), Gaps = 20/287 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLL 66
            L   R D R+ DN    AA   SD K+I  FI TPEQ      S        F+  SL 
Sbjct: 7   ALFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLK 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + K L  K  +F       +  +   +     +  V  ++ N  Y     +RD  +E  
Sbjct: 66  DLDKQLEGKLSLF-------YGANTVVVADLISEFGVDAVYVNADYTPYSKKRDADIEAI 118

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +       +  + PG I+       K    F   +++   +    +  + + ++ 
Sbjct: 119 CDEHQVPFVSSHDMCLVDPGEIVIKEG--TKFEPSFFNKVMELKTRKSEAAPEISSEKVK 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGE-----QNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 +  +  ++  +        G              KF K+        R+    +
Sbjct: 177 KSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREGTFPK 236

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             T++L+ YL  G +S R+     ++    +LI        W++   
Sbjct: 237 MKTTELAAYLRFGCVSTREVVEEFEKLNKRMLITQTIRRDYWVHMFH 283


>gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae]
 gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae]
          Length = 538

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 146/441 (33%), Gaps = 34/441 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 99  IYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++   +  I F          +++ +  +   ++V  +  +        +    + K L
Sbjct: 156 VEQQCRELDIPFHLL----LGPAVDRIPEFVKSRKVGAVICDFAPLRVPRKWVDDVVKAL 211

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184
              V     D   ++P     +      + +       L + L +     +       R 
Sbjct: 212 PKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFPPVVKHPHGTGCRK 271

Query: 185 TGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PV  +      +      +      G + A   L +FC  ++  + ++R+ P     S
Sbjct: 272 VDPVDWTAAYEMLECDKSVDEVDWAKPGYKAACKQLYEFCSRRLRQFNDKRNDPLADAIS 331

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++          ++     +      + + +    Y S+  
Sbjct: 332 GLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAIVRRELADNFCYYNEHYDSLKG 391

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   T             + ++     T   + ++A  QL   G MH  LRM  A  
Sbjct: 392 LSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYDDLWNSAQLQLVREGKMHGFLRMYWAKK 451

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIF 409
           +++      +  E   +      LDG   +   G  W+   G   + +         R  
Sbjct: 452 ILEWTETPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG-GVHDMGWKERSIFGKIRYM 510

Query: 410 NPTIQG--KRFDPQGTFIRHW 428
           N   QG  ++FD    F+  +
Sbjct: 511 N--YQGCRRKFDVNA-FVIRY 528


>gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 193

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS    L+W R DLRI D+ AL+ A        + + I +PEQW+QH  +  +  F    
Sbjct: 1   MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++
Sbjct: 59  LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L  H      F D  + P  SI N + Q Y+V++ F+KA    L  + L        +
Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178

Query: 184 LT 185
             
Sbjct: 179 QN 180


>gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans]
 gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans]
          Length = 555

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 129/403 (32%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVP---AIR 183
              V     D   ++P     +      + +       L + L +               
Sbjct: 231 PQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQHPHGTGCKN 290

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +                   G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 291 VKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +      
Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++      +  E   +      LDG   +   G  W+  
Sbjct: 468 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510


>gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster]
          Length = 640

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 133/403 (33%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 203 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 259

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 260 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 315

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184
              V     D   ++P     +      + +       L + L +     R       + 
Sbjct: 316 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKN 375

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              V  S          +  +  +   G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 376 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 435

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +      
Sbjct: 436 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 492

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 493 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 552

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++         E   +      LDG   +   G  W+  
Sbjct: 553 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 595


>gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
           propionicus DSM 2032]
 gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
           propionicus DSM 2032]
          Length = 451

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 122/435 (28%), Gaps = 23/435 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+    R  DN AL  A   +    + +   F   P          RQ  F    L +
Sbjct: 13  LYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDAT---LRQYDFFLNGLEE 69

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             +SL++  I           D  E +   C +     +  +      + +  + +   +
Sbjct: 70  TARSLAEANIPLILRS----GDPAEEMVRLCTELTPALVATDFDPLRVKRQWLRTVTGHV 125

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V      + V     S     +         R       V   L+  P     L G 
Sbjct: 126 RCPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPHPHAWPTLPGS 185

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +    +              +P   + A          +      QR+ P     S LSP
Sbjct: 186 LDFPALRARLRVDRSVQPVSWPRSGEAAAWDTLDTFLRERLAGYGQRNDPNQSVCSNLSP 245

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G++S       +    +   +         +   +   F  H   +       +  
Sbjct: 246 FLHFGMISSHAIVLEIGRRGLHGEVVDSFIEELVVRRELADNFCLHTPDYDQISGFPEWA 305

Query: 308 IPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                +   +   ++    +  +  T  P+ +AA  QL   G M   +RM  A  +++  
Sbjct: 306 QRTLARHRHDPRPYVYDDAQFDRAQTHDPLWNAAQHQLVASGKMAGYMRMYWAKKILEWS 365

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS----TGNDSVP---YFRIFNPTIQG 415
                             LDG   +   G  W+       G    P     R  +     
Sbjct: 366 EDPAEALRIAIWLNDRYALDGRETNGYSGIAWSIGGVHDRGWTERPIFGTIRSMSEAGCR 425

Query: 416 KRFDPQGTFIRHWLP 430
           ++FD    +I  W P
Sbjct: 426 RKFDVN-RYIHTWTP 439


>gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL
           J2-003]
          Length = 282

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 115/295 (38%), Gaps = 20/295 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNTG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +            F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I         L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            YL  G +S R  W  L+E           G   +  EL WR+FY  +   +P+ 
Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRDFYNMIYVSFPNQ 278


>gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba]
 gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba]
          Length = 535

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 98  VYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFMMGGLQE 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 155 VEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVICDFAPLRLPRQWVENVSKAL 210

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 211 PKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRHPFGTGCKN 270

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V   +    +      ++         G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 271 VNAVDWLAAYASLQCDMEVEEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           S        ++ RE   +   +      
Sbjct: 331 GLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEE---AIVRRELADNFCFYNDQYDS 387

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 388 LKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 447

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++         E   +      LDG   +   G  W+  
Sbjct: 448 AKKILEWTATPEEALEYAILLNDKYSLDGRDPNGYVGCMWSIG 490


>gi|224060613|ref|XP_002190613.1| PREDICTED: similar to CPD photolyase-like [Taeniopygia guttata]
          Length = 697

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 137/431 (31%), Gaps = 29/431 (6%)

Query: 20  ITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           + DN A   A       +  +   F   P+         R   F+   L +V +  ++  
Sbjct: 272 VADNWAFLYAQRLALKQELPLHVCFCLVPKFLGAT---IRHYRFMLRGLQEVAEECAELN 328

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           I F          + + L ++ ++  V  L  +        +  + +++RL   V     
Sbjct: 329 IPFHLL----LGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERLPEDVPFAQV 384

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
           D   ++P            +       A +   +      +P P +        +    +
Sbjct: 385 DAHNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEACY 444

Query: 197 FDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
                            G    + +L+ F  E++  +   R+ P     S LSP+L  G 
Sbjct: 445 SSLQVDHTVKEVEWATPGTAAGMAVLKSFIAERLKSFSTHRNDPNKAALSNLSPWLHFGQ 504

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +S ++    ++++  +      +     +      E + +    Y SV     +   T K
Sbjct: 505 VSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLK 564

Query: 314 IEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           +        L + ++   G T  P+ +AA  Q+   G MH  LRM  A  +++       
Sbjct: 565 LHAKDKRPYLYSLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTRSPEE 624

Query: 371 IGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFD 419
             +          LDG   +   G  W+   G     +         R  N     ++FD
Sbjct: 625 ALQFAIYLNDRYELDGRDPNGYVGCLWSI-CGIHDQGWAERPIFGKIRYMNYAGCKRKFD 683

Query: 420 PQGTFIRHWLP 430
               F R + P
Sbjct: 684 VD-QFERRYTP 693


>gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia]
 gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia]
          Length = 555

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 129/403 (32%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVP---AIR 183
              V     D   ++P     +      + +       L + L +               
Sbjct: 231 PQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQHPHGTGCKN 290

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +                   G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 291 VKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +      
Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++      +  E   +      LDG   +   G  W+  
Sbjct: 468 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510


>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
 gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
           DP4]
          Length = 473

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 125/418 (29%), Gaps = 35/418 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   +  
Sbjct: 24  LYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 80

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L + GI F   Q     D  + +  +        +  +      +      + + L
Sbjct: 81  TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVHEAL 136

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      + V     S          +     + L + L      +     +     
Sbjct: 137 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 195

Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P  +                       P  P+  +       +       +  E+R+ 
Sbjct: 196 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 255

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S LSPYL  G+++ ++   R+            S        ++ RE   +   
Sbjct: 256 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 312

Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             P       F  W        + +     +   A ++  T  P+ +AA  QL   G +H
Sbjct: 313 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAAQTQLMRCGVIH 372

Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             +RM  A  L+          RI         LDG  ++   G  W+   G    P+
Sbjct: 373 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 429


>gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
 gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
          Length = 459

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 133/447 (29%), Gaps = 39/447 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + W+  D R+  N AL  A   ++     +  VF   P          R   F++  L
Sbjct: 24  TVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGAPM---RHYDFMFRGL 80

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +V+  L + G        + + +  + L  Y   +    L  +           + +  
Sbjct: 81  REVETRLRELG----VLFTALYGEPGKTLPEYAASRNAGALVADFSPLKLVRDWKQEVAP 136

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L      +    +++    +          +         + L       L     +L 
Sbjct: 137 GL-SCTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEPELQHQPDKLP 195

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV    +             P    GE  A   LR F   ++  Y ++R+ P     S 
Sbjct: 196 PPVEWDEMETLLKVDRSVKAVPALEPGEAAAELHLRDFVDGRLSRYADERNDPNSGAVSG 255

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS          E         +         I RE   +   +       
Sbjct: 256 LSPYLHFGQLSA----QHAAFEAARSKASEANREAFVEELFIRRELSENYCYYNERYDSF 311

Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W +K           A      ++Q  T  P+ +AA  QL   G +H  +RM  A
Sbjct: 312 DGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPLWNAAQTQLLETGVIHGYMRMYWA 371

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++         +   M      LDG   +   G  W+   G    P+         R
Sbjct: 372 KKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIG-GLHDRPWVERPIYGTIR 430

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNN 434
             N     ++FD     +  ++ E++ 
Sbjct: 431 YMNANGCKRKFD-----VPRYIAEMSG 452


>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 448

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 137/402 (34%), Gaps = 28/402 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D RI DN AL  A     +    +  VF       +      RQ  F+   L +
Sbjct: 22  IYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADGFLQ---AGLRQFDFMLRGLHE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
                    I     +     ++   L +Y  + R +  F    ++   +++        
Sbjct: 79  CAGVAESLNIPLDLVR----GEAGLVLPAYLEKHRAS--FLVMDFDPLRIKKSWQKAVLD 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
           +  +     D   ++P  S         +   P     ++  ++   D++  P PA   T
Sbjct: 133 KTGIPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLEDYPDVKPHPYPAQAGT 192

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G      +                 G   A  +L  F   ++  Y EQR+ P +Q  S L
Sbjct: 193 GVDPDGLLQEMDLDKTITPVRWLSPGPAGAGEVLDDFMAHRLSLYHEQRNDPNMQVLSNL 252

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G  S ++   ++K++    L  P     ++L ELI R         Y       
Sbjct: 253 SPYLHFGHTSAQRVALQVKKQ----LDTPVQSREAFLEELIVRRELSDNFCHYNQNYDNF 308

Query: 306 PFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +P          + +     +  QA +QG T  P+ +AA  ++   G MH  +RM  A
Sbjct: 309 QGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEMVKSGKMHGYMRMYWA 368

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +++      +  +          LDG   +   G  W+  
Sbjct: 369 KKILEWSRSPEQAIDTAIYLNDKYELDGRDPNGYTGIMWSIG 410


>gi|161138100|gb|ABX58022.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+P
Sbjct: 1   WGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60

Query: 431 ELNNVPTQYIHAPHSW 446
           EL  +P ++IH P   
Sbjct: 61  ELARMPGEWIHHPWDA 76


>gi|161138098|gb|ABX58021.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD D+ S+  GWQ+ A    D     R+ NP +QG+++DP G ++R W+P
Sbjct: 1   WGMKYFWDVLLDADIESDILGWQYIAGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60

Query: 431 ELNNVPTQYIHAPHSW 446
           EL  +P ++IH P   
Sbjct: 61  ELARMPGEWIHHPWDA 76


>gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta]
 gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta]
          Length = 554

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 130/400 (32%), Gaps = 20/400 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFMMGGLQE 174

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 231 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRHPYGTGCKN 290

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V   +    +      ++         G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 291 VNVVDWSAAYASLQCDMEVGEVQWATPGYKGACQQLYEFCSRRLRHFNDKRNDPTADALS 350

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--- 300
            LSP+L  G +S ++C   ++           +     +      + +      Y S   
Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKG 410

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +           + +     + L+  ++  T   + ++A  QL   G MH  LRM  A  
Sbjct: 411 LSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKK 470

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           +++      R  E   +      LDG   +   G  W+  
Sbjct: 471 ILEWTATPERALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510


>gi|47223395|emb|CAG04256.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 136

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 1/102 (0%)

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L  AWK+G TG P +DA MR+L T G+M NR R   ASFL KDL +DWR+G E+F S 
Sbjct: 1   MRLFDAWKEGKTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESL 60

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           L+D D+ SN G W ++A  GND     R FN   QG  +D  
Sbjct: 61  LVDHDVCSNYGNWLYSAGIGNDPRE-NRKFNMIKQGLDYDSN 101


>gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299]
 gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299]
          Length = 579

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 133/406 (32%), Gaps = 31/406 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W   D R+ DN AL  AC  ++   A V+ VF          G  ARQ  F+   L +
Sbjct: 24  IYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTRFL---GAGARQFCFMLKGLRE 80

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD------- 120
           ++++L  K I F   +     D    +  +  +   + +  ++                 
Sbjct: 81  MEQALLAKNIKFVLLE----GDPSLTVPRFAKECGASLIVADQSPLRLGRTWRVAIASSV 136

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                 +    +   ++ S  L  G+                +     +V+         
Sbjct: 137 DCPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYPEFLVEFPETPVVKETWPCAAAA 196

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A+   G    + I R  +      +  + +  + A H   +    +   Y E R+ PA  
Sbjct: 197 ALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAAHATLEHFLTRRLKYYEHRNDPAKP 256

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S LSPYL  G +S ++C     E         K+        ++ RE   +   + P
Sbjct: 257 QALSGLSPYLHFGQISAQRC---ALEARRYAKSSNKAVDVFLEELIVRRELADNFCWYSP 313

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA-------WKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                +       K    + S   +A       ++ G T   + +AA  ++   G MH  
Sbjct: 314 KYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQFENGETHDDLWNAAQLEMVHGGKMHGF 373

Query: 353 LRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           +RM  A  +++      +  E          LDG   S   G  W+
Sbjct: 374 MRMYWAKKIMEWTESPDQALEFAIHLNDKYQLDGRDPSGYVGCMWS 419


>gi|300934396|ref|ZP_07149652.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM
           45100]
          Length = 265

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69
           LVW R+DLR+ DN AL  A   S   V+ VFI   PE      + A  + F + ++  + 
Sbjct: 11  LVWFRDDLRLRDNPALTWAA--SRGPVVGVFILESPEATHARPLGAAAAWFQHKAIRGLH 68

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+   +           D  E + S   Q      +  R ++        +       
Sbjct: 69  DELAAHNVPLLL----AAGDPREVIPSLAAQLAGAVTWSRRYHQPFIDLDAHVKTALANQ 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
               KS    +L  P  I       Y+ +TPF + +  
Sbjct: 125 GTEAKSHSGYLLSEPWMIRTGQGTPYRKFTPFARNVED 162


>gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster]
 gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster]
          Length = 535

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 98  VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 155 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 211 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKN 270

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V   +    +      ++         G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 271 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +      
Sbjct: 331 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 387

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 388 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 447

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++         E   +      LDG   +   G  W+  
Sbjct: 448 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 490


>gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula]
          Length = 268

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467
           G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A  
Sbjct: 3   GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKV 62

Query: 468 --HHTLNQYYA 476
                L++ + 
Sbjct: 63  RLEEALSEMWQ 73


>gi|293605132|ref|ZP_06687523.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816456|gb|EFF75546.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 115

 Score = 93.7 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLR DLR+ DN AL AA  N    V A+F+A P+QWRQHG +  +  F   +L 
Sbjct: 1   MNT-LLWLRTDLRMHDNPALAAAREN--GTVTALFLAAPDQWRQHGDAPAKVDFWLRNLH 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           ++ + L ++GI  +    +++  + E + ++C    +T++  N ++ INE 
Sbjct: 58  ELSRDLGERGIPLKLLTVADWSKAPEAIAAFCQAHAITQVHANTEWAINER 108


>gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster]
 gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster]
 gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster]
 gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct]
 gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct]
          Length = 555

 Score = 93.7 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 175 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P     +      +       + +   +      +  P       
Sbjct: 231 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKN 290

Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           V   +    +      ++         G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 291 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   ++           +        ++ RE   +   +      
Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           A  +++         E   +      LDG   +   G  W+  
Sbjct: 468 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510


>gi|161138102|gb|ABX58023.1| cryptochrome 1a [Triticum aestivum]
 gi|161138104|gb|ABX58024.1| cryptochrome 1a [Triticum aestivum]
 gi|161138106|gb|ABX58025.1| cryptochrome 1a [Triticum aestivum]
          Length = 76

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLP
Sbjct: 1   WGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLP 60

Query: 431 ELNNVPTQYIHAPHSW 446
           EL  +PT++IH P   
Sbjct: 61  ELARLPTEWIHHPWDA 76


>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
 gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
          Length = 457

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 127/399 (31%), Gaps = 18/399 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  L W+++  R+  N AL  A   ++     ++ +F  T    +    + R   F+   
Sbjct: 19  TYVLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCLT----KYPQANLRHYTFMLEG 74

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+Q +KSL + GI F   +     + ++ +  +     +     + Q      R +    
Sbjct: 75  LVQTKKSLEKLGIQFVMLK----GNPVDVVHEFARDASLLVTDQDYQKLQRGWRENLAAS 130

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                  +  +    V          A  + +         +     + L +  +   + 
Sbjct: 131 ISCPFAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFVHPFELSALANSSLEIDQD 190

Query: 185 TGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +  +                   P +  G   A   L  F   ++  Y E+R+ P +   
Sbjct: 191 SLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSDFIAHRLGDYDEKRNDPNLDFL 250

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL  G +SP +   ++++                  EL     Y           
Sbjct: 251 SGMSPYLHFGQISPLEIALKVQDA-KKGGSTAYMEELVVRRELAMNFVYYDKDYDSLDCL 309

Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                      + ++ +  +  + ++Q  T  P  +AA R++   G MH  +RM     +
Sbjct: 310 PDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDPYWNAAQREMVLTGKMHGYMRMYWGKKI 369

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           ++      +  +          LDG   +   G  W   
Sbjct: 370 LEWTDSPEQAYQIALYLNNKYELDGRDPNGYAGIAWCFG 408


>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 468

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 132/438 (30%), Gaps = 33/438 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N AL  A          ++ VF   P          R   F+   L +
Sbjct: 34  IYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPSFLDAPF---RHYDFMLKGLEE 90

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K+L +  I F   +     +    +  Y  Q     +  +           K     L
Sbjct: 91  TSKALERINIPFMLLE----GEPDTEISRYACQSEAGAVVTDFSPLNISRNWKKKAADIL 146

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      + V     S                +     +    +  LP P +    P
Sbjct: 147 DIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVPFPTILPLPAPHVHHRSP 206

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                  R               GE  A   L  F K ++  Y   R+ P     SQLSP
Sbjct: 207 DWKQVRERLQKDRSVPPVNRIAPGETAAAESLENFIKSRLSGYATARNDPNSNALSQLSP 266

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +S       +     +     K         +I RE   +   + PS    +  
Sbjct: 267 YLHFGQISA----QHVALRVAESRAPQKDKTAFLEELIIRRELSDNFCNYNPSYDRFEGI 322

Query: 308 IPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W ++       +  +  + +  +++  T   + +AA  +L   G +H  +RM  A  +
Sbjct: 323 PAWAKQTLLLHGQDKREYLYTIDVFEKAATHDKLWNAAQSELVQSGKIHGYMRMYWAKKI 382

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFN 410
           ++         E          LDG   +   G  W+   G    P+F        R  N
Sbjct: 383 LEWSSSPPEAFEMAIYLNDRYALDGRDPNGYAGVAWSIG-GLHDRPWFERPVYGNIRYMN 441

Query: 411 PTIQGKRFDPQGTFIRHW 428
            +   ++FD +  +I  +
Sbjct: 442 ASGCRRKFDVE-RYISRF 458


>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
 gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
          Length = 450

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 147/435 (33%), Gaps = 28/435 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N AL  A   ++     +  VF   P          R   F+   L +
Sbjct: 21  IYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPSFLNAP---LRHYDFMLKGLHE 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+++L +  I F   Q     +    L  +  + +   +  +           + +   L
Sbjct: 78  VERALRRLNIPFYLVQ----GEPEIELPRFAREMKAGAVVTDFSPLKISREWKRRVGAHL 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     D   ++P            + + P  K+L+  L+    +  P+ A   + P
Sbjct: 134 --PLPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTGFPQLEPLEATTESHP 191

Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V  S+I        +         GE+ A + L  F ++++  Y E R+ P     S LS
Sbjct: 192 VDWSSISCSLKADHRVAPVEWLKPGEEAAANCLDTFLEKRLSSYAELRNDPNSGVLSNLS 251

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G +S +    R+ E  +    +        +   +   +  +   +         
Sbjct: 252 PYLHFGQISAQYIALRVSESRMPDESRSAFLEELIVRRELSDNYCFYNDRYDSFDGSPTW 311

Query: 307 FIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     +   +L  A  +    T   + +AA  +L T G +H  +RM  A  +++ 
Sbjct: 312 AKESLMNHRNDHREYLYTADEFATAKTHDRLWNAAQLELVTTGKIHGYMRMYWAKKILEW 371

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTI 413
                +  E          LDG   +   G  W+   G    P+F        R  N + 
Sbjct: 372 SESAEQAFETAMALNDRYALDGRDPNGYAGVAWSIG-GVHDRPWFERPVYGKIRYMNASG 430

Query: 414 QGKRFDPQGTFIRHW 428
             ++FD    +I  +
Sbjct: 431 CARKFD-VARYIARF 444


>gi|218514415|ref|ZP_03511255.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 105

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++ SL  +  
Sbjct: 10  ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
           SL ++    +        +++  L S   Q     +F+
Sbjct: 69  SLRKR----RGRALVASGEALGVLRSLIRQSDADAVFW 102


>gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
 gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
          Length = 521

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQV 68
           + W R  LR  DN +L  A   S   V  VF+   +  +   I   A Q  F+   L  +
Sbjct: 69  IHWFRKGLRFHDNPSLLHALRTS-RHVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQDL 127

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
              L   G+     +     ++  +   +  +  +T+L ++ + E     
Sbjct: 128 DTRLRAYGLRLFVAR----GNAEAFFAEHFRKWNITQLTHDVETEHYHRF 173


>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 489

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 131/404 (32%), Gaps = 23/404 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   +    + +++        +  S RQ HF+   L +V+ 
Sbjct: 50  VYWMSRDSRVQDNWALIYAQELAHTAKLPLYVVFCMTKSFNNASMRQFHFLIKGLEEVRV 109

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F          +   L+ +  +  +  +  +             +  +L   
Sbjct: 110 ECQKLDITFVMLD----GSADLVLNDWVREHDICAVVCDFNPLRTVREWVSRIRDQLPDT 165

Query: 131 VICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           V     D   ++P     +   ++    +     +           +R     ++ L   
Sbjct: 166 VYFAQVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLECYLKPFPPVVRHEYRSSVVLDPC 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            T     +       A   + P      G  +AL++L +F +  +  Y   R+ P ++  
Sbjct: 226 TTTHIDWQQLLASRDADVSVGPVDWIEPGYISALNVLARFIRCNLLKYKMSRNNPVLKTQ 285

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHLMAFYPS 300
           S +SP+   G +S ++    L    ++                  + RE   +   +  +
Sbjct: 286 SNMSPFYHFGQISVQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYNSN 345

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQ------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    W ++      S   Q       ++   T   + +AA RQL   G +H  LR
Sbjct: 346 YDTFLGAPNWAKETLVIHKSDSRQYIYSLLQFEHNQTHDELWNAAQRQLRNEGKIHGYLR 405

Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           M  A  +++      +  E          LDG   +   G  W+
Sbjct: 406 MYWAKKILEWTQTPEQALEYSIYLNDRYSLDGRDPNGYVGCMWS 449


>gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
          Length = 536

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 134/403 (33%), Gaps = 25/403 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 98  VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++      I F          ++E L  +   + +  +  +        +  + + K L
Sbjct: 155 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184
              V     D   ++P     +      + +       L + L +     R       + 
Sbjct: 211 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKN 270

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              V  S          +  +  +   G + A   L +FC  ++ ++ ++R+ P     S
Sbjct: 271 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++C   L+ +         S        ++ RE   +   +      
Sbjct: 331 GLSPWLHFGHISAQRCA--LEVQRFRGGQHKASADAFCEETIVRRELADNFCFYNEHYDS 388

Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W        + +     + L+  ++  T   + ++A  QL   G MH  LRM  
Sbjct: 389 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 448

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
              +++      +  E   +      LDG   +   G  W+  
Sbjct: 449 PQKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 491


>gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 35/418 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   +  
Sbjct: 24  LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 80

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L + GI F   Q     D  + +  +        +  +      +      + + L
Sbjct: 81  TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREAL 136

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      + V     S          +     + L + L      +     +     
Sbjct: 137 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 195

Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P  +                       P  P+  +       +       +  E+R+ 
Sbjct: 196 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 255

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S LSPYL  G+++ ++   R+            S        ++ RE   +   
Sbjct: 256 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 312

Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             P       F  W        + +     +   A ++  T  P+ +A   QL   G +H
Sbjct: 313 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAGQTQLMRCGVIH 372

Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             +RM  A  L+          RI         LDG  ++   G  W+   G    P+
Sbjct: 373 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 429


>gi|225470301|ref|XP_002266483.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 485

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 36/444 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L  + +
Sbjct: 25  VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 84

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L Q   I F   Q     ++IE + ++  +   + L  +        +  + + KR+  
Sbjct: 85  DLEQTLQIPFFLFQ----GEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKRVGK 140

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188
           +V     D   ++P            +        L+ + L+       P      T   
Sbjct: 141 KVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQS 200

Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +                +  +       +  +     F  +++  Y   R+ P   G
Sbjct: 201 IDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPG 260

Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL  G +S ++C     E   +    P++        ++ RE   +   + P 
Sbjct: 261 ALSGLSPYLHFGQISAQRC---ALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPR 317

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               +    W  K   +  S   +            T  P+ +A+  ++   G MH  +R
Sbjct: 318 YNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFMR 377

Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY------ 405
           M  A  +++                    +DG   +   G  W+   G     +      
Sbjct: 378 MYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWQERQIF 436

Query: 406 --FRIFNPTIQGKRFDPQGTFIRH 427
              R  N     ++FD  G +I H
Sbjct: 437 GKIRYMNYAGCKRKFDVDG-YIAH 459


>gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi]
          Length = 529

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 123/400 (30%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D+R+ DN A   A      ++  +   F   P          R   F+   L +
Sbjct: 93  LYWMSRDVRVQDNWAFLFAQKLALKNELPLHVCFNLVPRFLDAT---IRHFKFMLNGLEE 149

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K   +  I F   + +   +      ++  + R+  +  +       ++  + + K L
Sbjct: 150 VAKECEKLNIHFHLLRGNAGQNV----PAFVKKHRIGGVVCDFSPLRVPMQWVEDVRKAL 205

Query: 128 QHRVICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              V     D   ++P       L +A +  +                 ++     + + 
Sbjct: 206 PMEVPLCQVDAHNIVPVWVTSEKLEYAARTIRNKVNNNLGTFLTPFPPVIKHPHKASFQA 265

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P  I                 G    +  L+ F ++++  +  +R+ P     S 
Sbjct: 266 EPIDWPQVIDSLEVDRTVDEVKWATPGYTGGVATLQSFVEKRLGKFNAKRNDPTENALSN 325

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303
           LSP+   G ++ ++    +K           S        ++ RE   +   +  +    
Sbjct: 326 LSPWFHFGQIAVQRAVLAVKSHGKRHTESVASFCEE---AIVRRELADNFCFYNKNYDNL 382

Query: 304 ---GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                      +    ++  +       +   T   + ++A  Q+   G MH  LRM  A
Sbjct: 383 KGAYDWARKTLDDHRKDRRVYCYTREELETAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 442

Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWA 395
             +++             Y   +  LDG   +   G  W+
Sbjct: 443 KKILEWTKSPEEALETAIYLNDRFNLDGRDPNGYVGCMWS 482


>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
          Length = 480

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 128/397 (32%), Gaps = 19/397 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D+RI DN AL  A   +    + + I           S R   F+   L +++K
Sbjct: 43  LYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIEK 102

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F         +    +  +     +  +  +       +     ++K L   
Sbjct: 103 ECKKLNINFHLLH----GEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNLPKD 158

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGP 187
           +     D   ++P     +      K         ++  +      ++       +    
Sbjct: 159 IPICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPYTTKEKFEKN 218

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                +                 G +N +  L  F + ++  Y ++R+ P     S LSP
Sbjct: 219 NWKIALQNVEVDKSVKEITWAKPGYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSP 278

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +   G++S ++C   +KE      +  KS        +I +E   +   +     + +  
Sbjct: 279 WFHFGMISVQRCILEIKEY---KKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGA 335

Query: 308 IPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            PW        + +  K  + L   +   T   + +A   Q+ TIG MH  LRM  A  +
Sbjct: 336 YPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKKI 395

Query: 362 VKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWA 395
           ++         +          +DG   +   G  W+
Sbjct: 396 LEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWS 432


>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
          Length = 510

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 133/402 (33%), Gaps = 25/402 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A   +   +  +   F   P+       + R   F+   L +
Sbjct: 74  VYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKYI---HTTLRHYKFMLTGLEE 130

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +      + F   +       +E+L           +  +       ++  + +++ L
Sbjct: 131 VSEECEDLNVSFHLLKGPAHQSLVEFLKDV----DAATVVCDFSPLRLPLQWLEEIKEVL 186

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +     D   ++P            + +       L + L +           R   
Sbjct: 187 PTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEFPPLIRHKYPNRKPS 246

Query: 187 PVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          + +D +     G +NA H L +FC+ ++  + ++R+ P I   S 
Sbjct: 247 TKVNWKSVYNTLKCLKTVDEVASVKPGYKNACHQLLEFCQNRLKLFHDKRNDPNIDALSG 306

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+ + G +S ++C   +K           +        ++ RE   +   +  +    
Sbjct: 307 LSPWFNFGQISIQRCILEIKTYEHKFKDSVAAFCEE---AIVRRELADNFCFYNQNYDNF 363

Query: 305 KPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W+       + +     + L+ ++Q  T   + ++A  QL   G MH  LRM  A
Sbjct: 364 QGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHDDLWNSAQLQLMREGKMHGFLRMYWA 423

Query: 359 SFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAAS 397
             +++         E          LDG   +   G  W+  
Sbjct: 424 KKILEWSKSPEDALEFSLLLNDRYSLDGTDPNGYVGCMWSIG 465


>gi|256828229|ref|YP_003156957.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
           4028]
          Length = 452

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 123/438 (28%), Gaps = 32/438 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R  DN  L  A      S   V  +F   P+        A   +F+   L +
Sbjct: 20  LYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPDFAEAT---AVHFNFLLDGLTK 76

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L ++ I F         +   +  +      VT     R              + +
Sbjct: 77  TAQTLRRQNIPFFALSGIPGLEVANFARTLKASLVVTDFDPLRIKAQWHKDLLSAWNQAV 136

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                       V+      +   L         ++ L + L +  +  +          
Sbjct: 137 HEVDSRNIVPARVVSDRREFMARTL-----RPKIKRLLGEFLDEFPVLPMHPHPWPTAVS 191

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +  R           +     +     L     +        R+ P     S LS 
Sbjct: 192 APDFSSLRHKIRDDGRRQALRVEPGEQPARDLLCHFLQNKLPVYANRNDPNQDVCSSLSA 251

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G+LS ++     +   +                ++ RE   +     P     + F
Sbjct: 252 HLHFGMLSAQRAALETQACGLAGENVDAFLDEL----IVRRELSDNFCLHTPGYDTEEGF 307

Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W ++                       T  P+ +AA  Q+   G MH  LRM  A  +
Sbjct: 308 PAWAKESLHKHLRDPRPVIYSPEELEAARTHDPLWNAAQTQMLRSGKMHGYLRMYWAKKI 367

Query: 362 VKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAAS----TGNDSVPYF---RIFNP 411
           ++  L      R          LDG  ++   G  W+       G    P F   R  N 
Sbjct: 368 LEWSLSAADALRTAIRLNDRYSLDGRDSNGYTGIAWSIGGVHDRGWTERPIFGKIRFMNL 427

Query: 412 TIQGKRFDPQGTFIRHWL 429
               ++FD    F+R W+
Sbjct: 428 AGARRKFDVD-RFVRSWI 444


>gi|50752305|ref|XP_422729.1| PREDICTED: similar to photolyase [Gallus gallus]
          Length = 499

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 132/438 (30%), Gaps = 29/438 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A       +  +   F   P          R   F+   L +
Sbjct: 67  LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLDAT---IRHYGFMLRGLRE 123

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K  ++  I F            + L S+ ++  V  L  +        +  + +++RL
Sbjct: 124 VAKECAELDIPFHVL----LGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERL 179

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P            + +       L + L +               
Sbjct: 180 PEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPPVIRHPHPPPNPP 239

Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +         + +        G    L +L+ F  E++  +  QR+ P     S 
Sbjct: 240 EPIAWDACYSSLQVDRTVTEVAWATPGTAAGLAMLQSFITERLKSFGSQRNDPNKAALSN 299

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301
           LSP+   G +S ++    +++          +     +      E + +    Y SV   
Sbjct: 300 LSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 359

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                        +     + L   +Q  T  P+ +AA  Q+   G MH  LRM  A  +
Sbjct: 360 YDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQMVREGKMHGFLRMYWAKKI 419

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN--------DSVPYFRIFN 410
           ++         +          LDG   +   G  W+   G         D     R  N
Sbjct: 420 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSI-CGIHDQGWKERDVFGKIRYMN 478

Query: 411 PTIQGKRFDPQGTFIRHW 428
                ++FD    F R +
Sbjct: 479 YAGCKRKFDVD-QFERRY 495


>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 474

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 35/418 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   +  
Sbjct: 20  LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 76

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L + GI F   Q     D  + +  +        +  +      +      + + L
Sbjct: 77  TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREAL 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      + V     S          +     + L + L      +     +     
Sbjct: 133 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 191

Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P  +                       P  P+  +       +       +  E+R+ 
Sbjct: 192 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 251

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S LSPYL  G+++ ++   R+            S        ++ RE   +   
Sbjct: 252 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 308

Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             P       F  W        + +     +   A ++  T  P+ +A   QL   G +H
Sbjct: 309 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAGQTQLMRCGVIH 368

Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             +RM  A  L+          RI         LDG  ++   G  W+   G    P+
Sbjct: 369 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 425


>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
 gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
          Length = 445

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 136/436 (31%), Gaps = 32/436 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + W+  + R+ DN  L  A   +  KV  I VF   P          R   F+   + QV
Sbjct: 23  VYWMSREQRVFDNWGLLHARELAGDKVPLIVVFCLVPSFLGAT---LRHYDFMLNGMQQV 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L + G  F            E L ++    R   +  +      + +  + + +++ 
Sbjct: 80  EKDLRKLGYDFVLLS----GQPDETLPAFVSNIRAGAVVTDFDPLRIKQQWQENVGQKID 135

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             ++     + V     +               R  + + L +       + +  + G  
Sbjct: 136 IPLLEVDGHNIVPARFVTDKREYG-----ARTIRPKIQRLLPEFLEEFPELASAEVKGEG 190

Query: 189 TPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P    +      +  + + P     GE  A   L +F    +  Y E+R+ P  + TS+
Sbjct: 191 FPVVDWKQVRSSIKVDETVGPVDLIPGESAAHAALDEFVTYGLGAYAEKRNDPNAEATSR 250

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-M 303
           LS Y   G L+P++    +        +           EL                   
Sbjct: 251 LSAYYHFGQLAPQRAALEVAARPTGESVDSYLEELIIRRELSDNFCLHTPNYDSLDAAPE 310

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                      +     +  + ++Q  T   + +AA  Q+   G+MH  +RM  A  +++
Sbjct: 311 WAQKTLSEHSADRRAYLYSYEDFEQARTHSALWNAAQSQMVHSGFMHGYMRMYWAKKILE 370

Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412
                               LDG   +   G  W+   G     +         R  N  
Sbjct: 371 WSASAEEALSITIALNDRFELDGRDPNGYVGALWSIG-GVHDRGWKKRSVFGSIRYMNER 429

Query: 413 IQGKRFDPQGTFIRHW 428
              ++FD    ++R W
Sbjct: 430 GCRRKFDVDA-YVRKW 444


>gi|156555630|ref|XP_001603285.1| PREDICTED: similar to DNA photolyase [Nasonia vitripennis]
          Length = 504

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 126/400 (31%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A      +   +   F   P+         R   F+  +L +
Sbjct: 58  VYWMFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLDAT---IRHYKFLLEALEE 114

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K   +  I F         +    + ++  + ++  +  +       +   + ++K+L
Sbjct: 115 VEKDCKELNINFHLLH----GEPNTAIINFVEKYKMGAVIADFFPLRLPLFWLEDIKKKL 170

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRL 184
             ++     D   ++P            +       + +   +      ++       + 
Sbjct: 171 PKKIPLCQVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPPVIKHPHTSDQKF 230

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 + +                 G +  +  L KF K ++  Y E+R+ P     S 
Sbjct: 231 DKINWDTALDDVLVDKSVDKITWAKAGYKGGIAELDKFLKIRLRIYDEKRNNPIFNALSN 290

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G++S ++C    K+         ++        ++ RE   +   +       
Sbjct: 291 LSPWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEE---AIVRRELSDNFCFYNEHYDSL 347

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W  +      +              G T   + +AA  QL   G +H  LRM  A
Sbjct: 348 KGAYDWARETLNQHRNDKRDYIYTLNELENGLTHDDLWNAAEIQLVKEGKIHGFLRMYWA 407

Query: 359 SFLVKDLLVD---WRIGEEYFMSQLLDGDLASNNGGWQWA 395
             +++         +          +DG   +   G  W+
Sbjct: 408 KKILEWTETPDDALKWSIYLNDKYSMDGRDPNGYVGCMWS 447


>gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti]
 gi|108882857|gb|EAT47082.1| DNA photolyase [Aedes aegypti]
          Length = 506

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 119/400 (29%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A      ++  +   F   P+         R   F+   L +
Sbjct: 71  IYWMSRDARVQDNWAFLFAQKLALKNELPLHVCFSLVPKFLDAT---IRHYKFMLKGLEE 127

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K      I F          + + +  +     +  +  +       ++  + + K L
Sbjct: 128 VAKECESLNINFHMLTGM----AKDTIPKFVKTHNIGAVVCDFSPLRVPMKWVEDVRKSL 183

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIRLTG 186
              V     D   ++P            +         +   L Q               
Sbjct: 184 PAEVPLCQVDAHNIVPLWVTSEKQEYAARTIRNKVNNNLNTYLTQFPPVIKHPHKASFKA 243

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          + +D       G    + +L+ F ++++  +  +R+ P     S 
Sbjct: 244 DSIDWVKLLDTIEVDRTVDEVDWAVPGYTGGIGVLQSFVEKRLRKFNAKRNDPTDDALSN 303

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++C   +K+          +        ++ RE   +   +  +    
Sbjct: 304 LSPWFHFGQISVQRCVLAVKKYGKGYSEGVAAFCEE---SIVRRELSDNFCYYNKNYDNL 360

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W        + +     +     +Q  T   + ++A  Q+   G MH  LRM  A
Sbjct: 361 KGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHDDLWNSAQIQMVKEGKMHGFLRMYWA 420

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +++         E          LDG   +   G  W+
Sbjct: 421 KKILEWTKTPEEALETAIYLNDRYQLDGRDPNGYVGCMWS 460


>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 465

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 144/432 (33%), Gaps = 20/432 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++     V +         G + R   F+   L   ++
Sbjct: 26  LYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGLMADYPGSNLRHYTFMLEGLQDTEQ 85

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q+GI F     +    ++E      L          ++   + V ++   +      
Sbjct: 86  ALIQRGIKFVMRYGNPDQIALELGKDASLVVCDRGYLRFQRQWRDNVAQNAPCQVVQVES 145

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    + + +    +      ++++    F        VQ     L + ++ L+  +  
Sbjct: 146 EVVVPVETASVKADYAARTIRPRIHRHLDRFLVPFASTPVQHSSLHLDLKSLDLSN-IEA 204

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  D     +  +F  G   A  IL KF ++    Y + R+ P     S +S YL 
Sbjct: 205 VLAKLPLDCSVPPVSSLFQGGTTRAKEILEKFLQKSFAIYADHRNQPQTDDVSYMSQYLH 264

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SP        +      +   +        ++ RE   +   + P          W
Sbjct: 265 FGQISP---LYLALQIQSMGNVPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNW 321

Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                   + +     + L+   +  T  P  +AAMR++   G+MHN +RM     +++ 
Sbjct: 322 AKTTLDNHRHDPRTPCYSLEQLDESRTEDPYWNAAMREMKHTGYMHNYMRMYWGKKIIEW 381

Query: 365 LLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAAST---GNDSVPYF---RIFNPTIQG 415
                   +   +      +DG  A++  G  W       G    P F   R    +   
Sbjct: 382 TETPELAFQTALDLNNKYFIDGRDANSYTGVAWVFGVHDRGWRERPIFGTVRYMAASGLK 441

Query: 416 KRFDPQGTFIRH 427
           ++ D  G +I+ 
Sbjct: 442 RKCDIDG-YIKK 452


>gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
           11109]
 gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
           11109]
          Length = 463

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 118/400 (29%), Gaps = 24/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + WL  D R  DN AL  A     +  A +  VF   P   +      RQ  F+   L +
Sbjct: 23  VCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQATY---RQYDFMLKGLEE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L QK I F   Q     +    +  +  Q R   +  +      + +    +  RL
Sbjct: 80  LTQNLGQKNIPFFLLQ----GEPAATIPMFLAQSRAGAVVSDFDPLRIKRQWKDQVLPRL 135

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                     + +     S               R           +   P         
Sbjct: 136 SIPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFLTEPRSIEIHPFRWPDSVPQ 195

Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +   ++                  GE      L  F +  +  Y   R+ P  +G S LS
Sbjct: 196 IDWRSVLASAAMDRSVPPVSWCQPGESAGRARLTSFIQLGLPRYHLSRNDPIREGQSDLS 255

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G ++ ++    ++        +           ++ RE   +     P       
Sbjct: 256 PYLHFGQIAAQRVAWEVQRAVAPTEARQAFLEEL----IVRRELADNFCWHNPDYDRFSG 311

Query: 307 FIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           F  W ++      +           ++   T  P+ +AA  ++   G MH  LRM  A  
Sbjct: 312 FPAWAQETLNKHRTDRRDYLYSLREFESARTHDPLWNAAQLEMLHRGKMHGYLRMYWAKK 371

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           +++         E          LDG   +   G  W+  
Sbjct: 372 ILEWTASPEEALEIALYLNNRYELDGRDPNGYAGVAWSIG 411


>gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii]
          Length = 612

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 121/407 (29%), Gaps = 29/407 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W+  D R+ DN AL  A   +       +V   F   P      G  ARQ  F+   L
Sbjct: 69  VYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGARQFGFMLRGL 125

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+   L  +GI F   +     D    L           L  +             +  
Sbjct: 126 RQLAPRLEARGIKFYLLK----GDPAHTLPQLVSGLGAGLLVTDYSPLRLGRTWRDQVCS 181

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSL 177
            L    + +    +V+    +     +    +     KAL + L +            ++
Sbjct: 182 ALGSVPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFLREFPEVPTLPAWTPAV 241

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              A+   G ++            +   P      +            ++  Y  +R+ P
Sbjct: 242 APEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPRGFLSPARLSLYDTKRNDP 301

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G L+P++      +         +S     +      + + H   
Sbjct: 302 ATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYLEELVVRRELADNFCHYCP 361

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG---FPIIDAAMRQLNTIGWMHNRL 353
            Y S+     +   +           L    Q   G     + +AA  ++  +G MH  +
Sbjct: 362 TYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHDELWNAAQLEMVHVGKMHGFM 421

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNGGWQWAA 396
           RM  A  +++      +  E          LDG D      G  W+ 
Sbjct: 422 RMYWAKKILEWTQGPEQAIEWAIYLNDRYELDGRDPG-GYTGVLWSM 467


>gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 462

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 127/393 (32%), Gaps = 6/393 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++ +  +  +         +++     V  +          
Sbjct: 84  RLADRGLKLVVREGAPDDVALAYAGAAAVLVTDRGYLRHQRQWRARVAEEAPCRVEQVEG 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    +        +      +M++      +      V+     L + + R    +  
Sbjct: 144 DVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDIDSGRSLDDIEA 203

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  D    A+  ++P G   A  IL  F  E +  Y E R+       S +S YL 
Sbjct: 204 VTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAVSHMSKYLH 263

Query: 251 IGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
            G +SP     +++     +  I+          EL     +     +    C+ +    
Sbjct: 264 YGQISPVWLAQQVRRAEGPESDIESYIEELVVRRELTMNHVHFRPDTYDSYTCLPEWARE 323

Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365
                  +  +  + L   + G T  P  +AAM+++   G+MHN +RM     +++    
Sbjct: 324 SLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPD 383

Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
               +           LDG   ++     W   
Sbjct: 384 PKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFG 416


>gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris
           gallopavo]
          Length = 503

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/381 (16%), Positives = 116/381 (30%), Gaps = 18/381 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A       +  +   F   P          R   F+   L +
Sbjct: 71  LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLDAT---IRHYGFMLRGLRE 127

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +  ++  I F            + L S+ ++  V  L  +        +  + +++RL
Sbjct: 128 VAEECAELDIPFHLL----LGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERL 183

Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P   +          +       L + L +               
Sbjct: 184 PEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPPVIRHPHPPPNPP 243

Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +           +        G    L +L+ F  +++  +  QR+ P     S 
Sbjct: 244 EPIAWDACYSSLQVDHTVTEVAWATPGTAAGLAMLQSFITKRLKSFGSQRNDPNKAALSN 303

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301
           LSP+   G +S ++    +++          +     +      E + +    Y SV   
Sbjct: 304 LSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 363

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                        +     + L   +Q  T  P+ +AA  Q+   G MH  LRM  A  +
Sbjct: 364 YDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKI 423

Query: 362 VKDLLVDWRIGEEYFMSQLLD 382
           ++         +  F   L D
Sbjct: 424 LEWTRSPEEALQ--FAIYLND 442


>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 446

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 16/360 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A     +  + +  VF   P+         +   F+   L +
Sbjct: 22  IYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDY---PSARNQHFRFMMEGLCE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L    I F         + ++ L  +  Q     +  +        +    L + +
Sbjct: 79  IDLELEYLKIPFFMIS----GNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVI 134

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +I     + V     S          +       L Q LV+           +    
Sbjct: 135 NVPLIEVDAHNIVPCRIASHKEEF-AARTIRPKINGLLSQFLVEFPKLKQQRYKWKGHTA 193

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                        F   +  +P G + A   L  F    +  Y  +R+ P I   S LSP
Sbjct: 194 HIDWE---RVINSFGIPNNFYPAGIRAADEALHNFVTGSLNGYNIKRNDPTIDHQSNLSP 250

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +S ++C     E F              +   +   +  +   +          
Sbjct: 251 YLHFGNISAQRCALDAGEAFWADEDIRAFKEELVVRRELAENYCFYNDHYDSVEGAHSWA 310

Query: 308 IPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               E+   +   ++     ++Q  T  P+ +AA +++   G MH  +RM  A  +++  
Sbjct: 311 KKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIKGKMHGYMRMYWAKKMLEWT 370


>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
 gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
          Length = 447

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 139/437 (31%), Gaps = 31/437 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  + R+ DN  LY A        A ++ VFI             RQ  F+   L Q
Sbjct: 21  VYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGAT---LRQYGFMLQGLEQ 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V + L    I F   +     +    +  +  Q++   +  +      + +    +    
Sbjct: 78  VARKLDGLNIPFLLLE----GEPRHSMLQFIAQEQTGCVVCDFDPLRIKRQWFDGVAAAA 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V+     + V     S+         +    R+ L + LV          A + T  
Sbjct: 134 TVAVLEVDGHNIVPCRIASVKREFGAYT-LRPKLRRVLPEFLVSIPQVVQHPFAWKKTVA 192

Query: 188 VTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           +  +   +    P   +   P F  GEQ A   L  F  + +  Y  +R+ P + G S L
Sbjct: 193 IPDTEQVQIRLKPDAGVGVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHGQSGL 252

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MG 304
           SP+L  G LSP++    +  +     ++          EL                    
Sbjct: 253 SPWLHFGHLSPQRIALAVATQGDSEDVEAMLEELIVRRELSDNFCLYCASYDTLDAAPDW 312

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                   + +  +  +    ++Q  T   + +AA  ++   G MH  LRM  A  +++ 
Sbjct: 313 AHRTLEKHRHDPRRFCYTQHEFEQAATHDLLWNAAQTEMLETGKMHGYLRMYWAKKILEW 372

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTG----------NDSVPYFRIFNP 411
                              LDG   +   G  W+   G                F  ++ 
Sbjct: 373 SESPEEAISTAIYLNDRYSLDGRDPNGYAGIAWSI-CGVHDRAWGERPVFGSIRFMSYDG 431

Query: 412 TIQGKRFDPQGTFIRHW 428
             +  + D    +IRHW
Sbjct: 432 CKRKFKVD---EYIRHW 445


>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 487

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 145/413 (35%), Gaps = 26/413 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  ++R  DN AL  A   + A    +  VF   P+         R  HF+   L +
Sbjct: 26  LYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFI---DAGLRHFHFMLQGLEE 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L + GI     + +      E +  +      +++  +      + +  +   +  
Sbjct: 83  TARILEELGIPLFLLRGT----PPEEVVRFAQAHGASRVVTDFDTLRIKRQWIRSAVEAA 138

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I     DS  + P    +   +        +   + +     L +L   A+   G 
Sbjct: 139 RQLDIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQPAAVPWKGA 198

Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +     D              P GE  AL  L  F + +++ Y  +R+ P +   S
Sbjct: 199 YQRPDWQAALDSLQADASVQPAGWLPPGENAALAELTAFIRVRMHRYAAERNNPLMPVLS 258

Query: 244 QLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301
            LSPYL  G+LS  R     ++ +          GA +++ EL + RE   +   + PS 
Sbjct: 259 HLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELADNFCWYEPSY 318

Query: 302 CMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              + F  W        + +     +  Q  ++  T  P+ +AA +++   G MH  +RM
Sbjct: 319 DSVEAFPDWALKTLDRHRADRRPYLYDEQQLEKARTHDPLWNAAQQEMVLTGKMHGYMRM 378

Query: 356 ITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWAASTGNDSVPY 405
             A  +++                    LDG  ++   G  W+   G    P+
Sbjct: 379 YWAKKILEWTESPEEALRIVIRQNDRWSLDGRDSNGYAGAAWSVG-GVHDRPW 430


>gi|15558998|gb|AAL02087.1|AF348456_1 cryptochrome 1 [Cucumis melo]
          Length = 61

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + T  DS  + RI NP ++G +FDP G ++R WLPEL+ +PT+
Sbjct: 3   LLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPNGEYVRRWLPELSRLPTE 61


>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
 gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
           hungatei JF-1]
          Length = 448

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 119/394 (30%), Gaps = 14/394 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+++ +R   N AL  A   S+     +I VF           +      F++  L  
Sbjct: 21  LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPV---HYRFLWEGLQD 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +SL+++GI FQ          ++ +        +            E R+  +     
Sbjct: 78  VNRSLTERGIGFQILS----GSPVDIIPRIADDACMMVTDQGWTRLQREWRQKVIDTAPC 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
           +  ++  +    V +        A       T    A +  L+   ++         TG 
Sbjct: 134 KVVIVETNLIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQGESTDCEPFTGL 193

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV           P        P GE  A H L  F  E +  Y    + P    TS LS
Sbjct: 194 PVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSAFLSETIDRYEATHNDPTAHATSYLS 253

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +SP     R+ E                        +Y  L   Y  +     
Sbjct: 254 AYLHFGHISPLDIALRVMEHPGPGTNAFLEQLIVRRELSHNFVWYNPLYDHYEGLPEWTR 313

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 +I+  + S+    +++  T     +A    +   G++H  LRM     +++   
Sbjct: 314 KSLEKHRIDTREYSYTPADFEECRTHDRAWNAMQLSMIRTGYLHGYLRMYWGKKILEWTE 373

Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
                            LDG   +   G  W   
Sbjct: 374 TPEDAYAIALYLNNRYELDGRDPNGYCGVAWCFG 407


>gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 256

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 11/245 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIG 252
           +   G
Sbjct: 236 FFKNG 240


>gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 462

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 126/393 (32%), Gaps = 6/393 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++    +  +         +++     V  +          
Sbjct: 84  RLADRGLKLVVREGAPDDVALAHAGAAAVLVTDRGYLRHQKQWRARVAEEAPCRVEQVEG 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    +        +      ++++      +      V+     L + + R    +  
Sbjct: 144 DVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDIDSGRSLDDIAA 203

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  D    A+  ++P G   A  IL  F  E +  Y E R+       S +S YL 
Sbjct: 204 VTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAVSHMSKYLH 263

Query: 251 IGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
            G +SP     +++     +  I+          EL     +     +    C+ +    
Sbjct: 264 YGQISPVWLAQQVRRAEGPESDIESYIEELVVRRELTMNHVHFRPDTYDSYTCLPEWARE 323

Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365
                  +  +  + L   + G T  P  +AAM+++   G+MHN +RM     +++    
Sbjct: 324 SLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPD 383

Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
               +           LDG   ++     W   
Sbjct: 384 PKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFG 416


>gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus]
          Length = 564

 Score = 90.7 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 127/411 (30%), Gaps = 28/411 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A          +   F  T         S RQ  F+   L  
Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLN---ASLRQFDFLLEGLKS 180

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           VQ+   +  I F     S   D    L+ +     ++ +  +             ++ +L
Sbjct: 181 VQRECHELNIGFNVLDGS--GDLT--LNDWVQTNNISAVVCDFNPLRVVRDWVTKVKSQL 236

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P              + P     L + L +     +       T 
Sbjct: 237 APHVFFAQVDAHNIIPCWQASLKQEVYASTFRPKVLSQLDRFLTEFPAVIVHPYGKNCTA 296

Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +         +++ P      G  +A+  L  F ++ +  Y   R+ P     S 
Sbjct: 297 ADIDWHYLLQSRDANKSVSPVKWAVPGYDHAVKSLYIFIQDNLSKYASLRNNPTTTVISN 356

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++   ++      L          +++E++ R        FY      
Sbjct: 357 LSPWFHFGQISVQRVVLKIL----SLKSVYPDSVDRYIDEVVVRRELADNFCFYNDRYDC 412

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK-------QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               P   +   ++  +  +++           T   + ++A  QL   G MH  +RM  
Sbjct: 413 VEGAPQWAQETIDQHKYDHRSYIYNLTELASCQTHDELWNSAQAQLRCEGKMHGYMRMYW 472

Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405
           A  +++                    +DG   +   G  W+   G    P+
Sbjct: 473 AKKIMEWTPSAEMALGYAIFLNDHYSVDGRDPNGYVGCMWSI-CGVHDRPF 522


>gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST]
 gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST]
          Length = 549

 Score = 90.7 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 119/400 (29%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A      +D  +   F   P+         R   F+   L +
Sbjct: 113 LYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFLDAT---IRHFKFMLKGLEE 169

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F   + S  ++      ++  + ++  +  +       ++    + K L
Sbjct: 170 VAEECRRLNIQFHLLRGSAGENV----PAFVKKHKIGGVVCDFSPLRVPMKWVDEVRKAL 225

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIRLTG 186
              +     D   ++P     +      +         +   L                 
Sbjct: 226 PMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFPPLVKHPFTANFEA 285

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          + ++       G    +  L+ F ++++  + ++R+ P     S 
Sbjct: 286 DPINWTQVLDTLQVDRTVEAVEWATPGYAGGVKTLQTFVEKRLGKFNDKRNDPTENALSN 345

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303
           LSP+   G ++ ++    +K+          S        ++ RE   +      +    
Sbjct: 346 LSPWFHFGQIAVQRAVLTVKKHGKRYSESVASFCEE---AIVRRELSDNFCFHNKNYDNL 402

Query: 304 ---GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                      +    +K  +       +   T   + ++A  Q+   G MH  LRM  A
Sbjct: 403 QGAYDWARKTLDDHRKDKRVYCYSREELETAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 462

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +++         E          LDG   +   G  W+
Sbjct: 463 KKILEWTKTPEEALETAIYLNDRYSLDGRDPNGYVGCMWS 502


>gi|161138108|gb|ABX58026.1| cryptochrome 1b [Triticum aestivum]
          Length = 76

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLP
Sbjct: 1   WGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLP 60

Query: 431 ELNNVPTQYIHAPHSW 446
           EL  +PT++IH P   
Sbjct: 61  ELARLPTEWIHHPWDA 76


>gi|254479942|ref|ZP_05093190.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039504|gb|EEB80163.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
           proteobacterium HTCC2148]
          Length = 204

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 7   MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIY 62
           M     + W R+DLRI DN AL    H    +++ VF    +       G+  ++  F+ 
Sbjct: 1   MPKVTEIYWFRSDLRINDNPALQ--LHCGVDRLLCVFFWPRDIPWCNLKGLGRQRERFLI 58

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
            SL  ++  L++ G      + +      + L S   + +VT+
Sbjct: 59  ESLEALRAQLAELGQKLLVFRET----PAQVLPSLVDEYKVTR 97


>gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 286

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC- 467
           G +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A  
Sbjct: 2   GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQV 61

Query: 468 --HHTLNQYYAA 477
                L++ +  
Sbjct: 62  RLQEALSEMWQL 73


>gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus]
 gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus]
          Length = 489

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 147/453 (32%), Gaps = 37/453 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V +A     R  G  +RQ  F+   L Q+Q 
Sbjct: 28  VYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFMLRGLQQLQH 87

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + +   I F   Q     ++ + + ++  +   + L  +        +  + + KR++ 
Sbjct: 88  DIQETLQIPFFLFQ----GEAEQTIPNFIRECGASLLVTDFSPLREVRKCKEEICKRVEE 143

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            V     D   ++P            K       K L   L+      +P          
Sbjct: 144 SVKVHEVDAHNVVPTWVASEKLEYSAKTLRGKINKKLPDYLIDYPSMVIPTRKWPSADKF 203

Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +     +          +   P      +  +     F  +++  Y   R+ P    
Sbjct: 204 IDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDGFLTKRLKGYAIDRNNPLKPK 263

Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL  G +S ++C     E      + P++        ++ RE   +   + P 
Sbjct: 264 GLSGLSPYLHFGQISAQRC---ALEARSIRKLNPQAVDVFLEELIVRRELADNYCYYQPH 320

Query: 301 V------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                               +  +  +  +  ++  T  P+ +AA  ++   G MH  +R
Sbjct: 321 YDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPLWNAAQLEMAHHGKMHGFMR 380

Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY------ 405
           M  A  +++         E          +DG   +   G  W+   G     +      
Sbjct: 381 MYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVF 439

Query: 406 --FRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434
              R  N     ++FD  G   +++  + E+  
Sbjct: 440 GKIRYMNYAGCKRKFDVDGYIAYVKRLVGEIKK 472


>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
          Length = 348

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 100/347 (28%), Gaps = 29/347 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHRLRLHDNPSLHSALEEKGFPFFPIFIFDGESAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  NQFKKHGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+CK      L  P +++     +  +        +  +         V    +    
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234
            P +    F    +   P           I            ++Q               
Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240

Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNE 284
                  +   +     LSP L  G LS R  +  +++ F  +     +          +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           LIWRE++  +    P+           +          LQ W +G T
Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKTPAGDELQRWVEGRT 347


>gi|30682738|ref|NP_849651.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana]
 gi|75201504|sp|Q9SB00|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName:
           Full=AtCPDII; AltName: Full=DNA photolyase; AltName:
           Full=Photoreactivating enzyme 1; AltName: Full=Protein
           UV RESISTANCE 2
 gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana]
 gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana]
          Length = 496

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 33/408 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F+   L Q
Sbjct: 31  VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +    I F   Q     D+ E + ++  +   + L  +        R    + KR 
Sbjct: 88  LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180
              +     D   ++P  +  +      +        L          L     +   + 
Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237
             +L    +  +           I+   P    G +  +     F  +++  Y   R+ P
Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G +S ++C     E        P++        ++ RE   +   
Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350
           + P     K    W  K   +  S   +         +G T  P+ +A+  ++   G MH
Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMVYQGKMH 380

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +RM  A  +++                    +DG   S   G  W+
Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428


>gi|326526437|dbj|BAJ97235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 703

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW ++DLR+ D+  L AAC      V+ +++         G S  +   +  +L  ++
Sbjct: 41  AVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELLLFALKDLK 98

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            +L  +             ++ + +     + +V  ++   + E 
Sbjct: 99  LALKSQRSDLLV----GLGNAEDAVLKLANEVQVGVIYTEEEVEH 139


>gi|326524207|dbj|BAJ97114.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 703

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW ++DLR+ D+  L AAC      V+ +++         G S  +   +  +L  ++
Sbjct: 41  AVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELLLFALKDLK 98

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            +L  +             ++ + +     + +V  ++   + E 
Sbjct: 99  LALKSQRSDLLV----GLGNAEDAVLKLANEVQVGVIYTEEEVEH 139


>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 470

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 134/442 (30%), Gaps = 27/442 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN A+  A   ++   + + +           + R   F+   L  +++
Sbjct: 31  VYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISNFPHANLRHYAFLNQGLPDIEE 90

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ + I F   +        E  +      +   +  +        R  K L ++++  
Sbjct: 91  DLAARNITFLMRRA-----PHESHEQLLADVKAAIVIGDENPMREPERWRKTLAEKIRIP 145

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                 D  +         +     +              +      P    +     + 
Sbjct: 146 FWTVDTDVVIPSSLIEKAQYGAYTIRPRLYRLLPEYLVPYENPHAQHPWHRPKSFKSDSV 205

Query: 191 SNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                               +  G    L  L++F  + +  Y  QR+ P   GTS +SP
Sbjct: 206 HEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKRFTTKLLGDYEVQRNKPEADGTSSMSP 265

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G L P+     +            +    +   + WRE   + + F       +  
Sbjct: 266 YLHYGHLGPQTIALAVDAAAKANPKLQSARDSYFNELIAWRELAVNFVRFSSVYDTAECA 325

Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITAS-- 359
             W +K          +            T   + +AA  Q+   GWMHN +RM  A   
Sbjct: 326 ENWAQKTIAEHARDEREHIYTTKQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMYWAKKI 385

Query: 360 -FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND----SVPYF---RIFNP 411
                D+    ++         +DG   +   G  WA     D    + P F   R  + 
Sbjct: 386 LEWTPDVDTAMKVCVYLNDKYFIDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKRRYMSG 445

Query: 412 TIQGKRFDPQGTFIRHW--LPE 431
               K+FD +  +IR    LPE
Sbjct: 446 ASTSKKFDSKA-YIRQMNALPE 466


>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
 gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
          Length = 459

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 126/402 (31%), Gaps = 9/402 (2%)

Query: 5   TAMSVH------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           ++M V+      + W++   R+  N+AL  A   ++A    + +    +    G   R  
Sbjct: 11  SSMPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFAGAQERHY 70

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +VQ+ L   GI    H         + +    +           +    +V 
Sbjct: 71  RFMLEGLAEVQQQLRLLGIPLWVHGDGIIPGLAKLVPFISVLVTDRAYTRVERQWRKQVA 130

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                        +    +        S      ++  +   F + +       D  S  
Sbjct: 131 SFVSCPFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIAYFAQIVAIQKPLVDGLSEE 190

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                +    T   +          + P    GE  A   L +F + K+  Y   R+ P+
Sbjct: 191 PLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIESKLSGYAIHRNDPS 250

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            Q +S LSPYL  G +S    ++ ++E  V+ +                  ++  L   Y
Sbjct: 251 QQFSSGLSPYLHFGQISAIDIYHAVREIEVEDVPVFLEELIVRRELAYNFVWFNPLYDAY 310

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +           + +     +     +Q  T  P  +AA ++L  +G MHN LRM   
Sbjct: 311 EGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWNAAQKELTELGTMHNYLRMYWG 370

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +++                 +  +DG   +   G  W   
Sbjct: 371 KKILEWSPSPKEAFMRALALNNTYQMDGRDPNGYAGVAWCFG 412


>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA]
 gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens PCA]
 gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens KN400]
          Length = 461

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 127/405 (31%), Gaps = 18/405 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A        A +  +F   P         ARQ  F+   L Q
Sbjct: 21  IYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLGAT---ARQYRFMLKGLEQ 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+ +L++  I F         D    + ++  + RV+ L  +      +    + +   +
Sbjct: 78  VRAALNRLDIPFFL----VTGDPKGAVAAFTRRHRVSYLVTDFDPLRVKREWKRQVAGEI 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                     + V     S               R           L+  P P       
Sbjct: 134 SIPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPPLQRHPFPWQGALPS 193

Query: 188 VTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                         +++        GE+ A   L +F ++ +  Y  +R+ PA+ G S L
Sbjct: 194 DAEWRETFTGMTLDESVPEVSWLASGEEAAQAALARFLEDGLAGYATRRNNPAVMGQSGL 253

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LS ++           +  +        +   +   F  +  A+       +
Sbjct: 254 SPWLHFGQLSAQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCYYNDAYDRFDGFPE 313

Query: 306 PFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                  +   +      +    +QG T   + +AA  ++   G MH  LRM  A  L++
Sbjct: 314 WAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMHGYLRMYWAKKLLE 373

Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405
                               LDG   +   G  W+   G    P+
Sbjct: 374 WTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIG-GVHDRPW 417


>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 496

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 125/408 (30%), Gaps = 33/408 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F+   L Q
Sbjct: 31  VYWMFRDQRLNDNWALIHAVDLANRTNAPVAVVFNLFDQFLGAK---ARQLGFMLKGLRQ 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +    I F   Q     D+ E +  +  +   + L  +             + KR 
Sbjct: 88  LHHQIDSLQIPFFLLQ----GDAKETIPKFIAECGASHLVTDFSPLREIRSCKDEVVKRT 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----------IQNLVQADLRSL 177
              +     D   ++P  +         +        L          ++   +     +
Sbjct: 144 SDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLLPDYLIEFPKLELPKKKWTGMM 203

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +     +             +   P    G +  +     F  +++  Y   R+ P
Sbjct: 204 DKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLMGKKDGFLTKRLKNYSADRNNP 263

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G +S ++C     E        P++        ++ RE   +   
Sbjct: 264 VKPKALSGLSPYLHFGQISAQRC---ALEARKVRNTSPQAVDTFLEELIVRRELSDNFCY 320

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350
           + P     K    W  K   +  S   +         +G T  P+ + +  ++   G MH
Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTADPLWNGSQLEMVYQGKMH 380

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +RM  A  +++                    +DG   S   G  W+
Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428


>gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
 gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
          Length = 510

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A   +   +  +   F   P+         R   F+   L +
Sbjct: 74  VYWMSRDARVQDNWAFLFAQKLAMKNELPLHVCFSLVPKFLEAT---IRHFKFMLKGLEE 130

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K      I F          + + +  +    ++  +  +        +  + + K L
Sbjct: 131 VAKECESLNIQFHMLTGM----AKDTVPKFVKAHKMGAVVCDFSPLRVPAQWVEDVRKAL 186

Query: 128 QHRVICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              V     D   ++P       L +A +  +                 ++      ++ 
Sbjct: 187 PAEVPLCQVDAHNVVPVWVTSEKLEYAARTIRTKVNNNLNTYLTQFPPVVKHPHKSKLKA 246

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P  +                 G    +  L+ F ++++  +  +R+ P     S 
Sbjct: 247 EPIDWPKLLDTLQVDRTVDEVEWAVPGYTGGVATLQGFVEKRLRKFNAKRNDPTDDALSN 306

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +K+          S        ++ RE   +   +  +    
Sbjct: 307 LSPWFHFGQISVQRAILAVKKYGKGFSEGVASFCEE---AIVRRELSDNFCYYNKNYDNL 363

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W  K   +                Q  T   + ++A  Q+   G MH  LRM  A
Sbjct: 364 KGAYDWARKTLDDHRKDKRTHVYTRDQLEQAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 423

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +++         E          LDG   +   G  W+
Sbjct: 424 KKILEWTKSPEEALETAIYLNDRYQLDGRDPNGYVGCMWS 463


>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana]
 gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana]
          Length = 496

 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 129/408 (31%), Gaps = 33/408 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F+   L Q
Sbjct: 31  VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +    I F   Q     D+ E + ++  +   + L  +        R    + KR 
Sbjct: 88  LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180
              +     D   ++P  +  +      +        L          L     +   + 
Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237
             +L    +  +           I+   P    G +  +     F  +++  Y   R+ P
Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G +S ++C    ++                   ++ RE   +   
Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVDIFLEEL---IVRRELSDNFCY 320

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350
           + P     K    W  K   +  S   +         +G T  P+ +A+  ++   G MH
Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMLYQGKMH 380

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +RM  A  +++                    +DG   S   G  W+
Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428


>gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus]
 gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus]
 gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus]
          Length = 464

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 137/438 (31%), Gaps = 28/438 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYAS 64
            V L W+  D R+ DN AL  A   +    I +   F   P+    H  ++R   F+ + 
Sbjct: 37  KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKF---HTTTSRHFMFLISG 93

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V +                +      +     + RV  +  +        R  K   
Sbjct: 94  LKEVAEECK----RLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTV 149

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIR 183
             L   +     D   ++P     +      +         L + + +  +         
Sbjct: 150 ISLPDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPF 209

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 P NI                 G +  + +L++F K ++  Y    + P     S
Sbjct: 210 SISIAKPKNISLDKTV---LPVKWATPGTKAGIIVLKEFIKNRLPSYDADHNNPTCDALS 266

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +S ++    + +   +     ++     +      + + +    Y S+  
Sbjct: 267 NLSPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFCYYNKHYDSIQS 326

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   T +   N     + + KQ     T  P+ +A+  Q+   G MH+ LRM  A  
Sbjct: 327 THSWARKTLEDHINDPRKYIYSIKQLEKAETHDPLWNASQMQMVREGKMHSFLRMYWAKK 386

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFN 410
           +++                    LDG   +   G  W+    +D            R  N
Sbjct: 387 ILEWTRTPEDALSYSIYLNNKYELDGTDPNGYVGCMWSICGLHDRAWKERPIFGKIRYMN 446

Query: 411 PTIQGKRFDPQGTFIRHW 428
                K+FD    FI+ +
Sbjct: 447 YESSKKKFD-VAVFIQKY 463


>gi|4454017|emb|CAA23070.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269380|emb|CAB81340.1| hypothetical protein [Arabidopsis thaliana]
          Length = 581

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW ++DLR+ D+  L AA  +    VI +++       ++     +   I  +L  
Sbjct: 35  STAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDTLELAII--ALED 90

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           ++K+L ++G          + ++   ++    + R   +F   + E +
Sbjct: 91  LRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYH 134


>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 506

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 133/439 (30%), Gaps = 31/439 (7%)

Query: 11  LVW-LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W  R D RI DN AL  A   +    +++ I      +    S R    I+  L +++
Sbjct: 68  IYWTFR-DERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLDCSLRHYKHIFQGLEELE 126

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
                  I F +        + + L  +  + ++  +  +       +   K L  R+  
Sbjct: 127 TECKSLDIQFHFL----IGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRIGS 182

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V     D   ++P     +      +         +   +      +  P         
Sbjct: 183 EVPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPPVIKHPFRSTFKAKP 242

Query: 190 PSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +                 P    G +  +  L +F K+++  Y   R+ P   G S+LS
Sbjct: 243 TNWDEADKTLEVDRSVVSVPGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLS 302

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S ++C   + +          +        ++ RE   +   + P     + 
Sbjct: 303 PWLHFGQISAQRCILEVSKLSKQYPDSVAAYREE---AIVRRELSDNFCFYNPKYDKIEG 359

Query: 307 FIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W +                        T   + ++A  QL   G MH  LRM  A  
Sbjct: 360 APNWAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRMYWAKK 419

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIF 409
           +++      R   +         +DG   S   G  W+   G     +         R  
Sbjct: 420 ILEWTDTPDRALADAIYLNDKYSMDGRDPSGFVGCMWSI-CGIHDQGWKEREIFGKIRYM 478

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           N     ++FD    FI  +
Sbjct: 479 NYAGCKRKFDINA-FIARY 496


>gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
 gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
          Length = 510

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 122/405 (30%), Gaps = 30/405 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A   +   D  V  VF             AR   F+   L  
Sbjct: 64  VYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFLLRGLRV 120

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K+L + GI F   +        + + ++      + L  +             +  RL
Sbjct: 121 VEKNLEKLGIAFFLLR----GRPEDTIPAFVEACNASILVLDFSPLRIGRTWRTGVVSRL 176

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPV 179
                    +          +      Y   T   K   Q          ++   +  P 
Sbjct: 177 GADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLEPFSKPWPG 236

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A       +  +           +D   P  +     +          Y  E+ D   +
Sbjct: 237 VAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAGFLSSRLQRYSAERNDPSKL 296

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S LSPY   G LSP++C   +++      +  +S        +I RE   +   + P
Sbjct: 297 ERLSDLSPYFHYGQLSPQRCAFEVRKA---RKLHMQSVDSFLEELIIRRELSDNFCYYQP 353

Query: 300 SVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    +    W          +  +  +  Q  + G T   + +A+  ++   G MH  +
Sbjct: 354 NYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMVHRGKMHGFM 413

Query: 354 RMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395
           RM  A  +++                    LDG   +   G  W+
Sbjct: 414 RMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWS 458


>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 449

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 142/456 (31%), Gaps = 47/456 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +  D R+ DN AL  A   +      ++ +F+    + R  G S     F+   L +
Sbjct: 2   VYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVL---RERPGGRSREHFLFMLDGLEE 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V + L + GI +   Q S    ++  L                 +      R +      
Sbjct: 59  VSRRLQELGIAWVLRQGSPSRTTLATLREL------DAASVYLDFSPLRGARARAELLAR 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRL 184
           +        D   ++P   + +               L+   ++A  R +  P   A  L
Sbjct: 113 EFEGSTHVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHL 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          P   I    P GE+ A   L+KF  EK+ YY   R+       S 
Sbjct: 173 ETLSFEQARDIVHGLPACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSD 232

Query: 245 LSPYLSIGVLSPRQC--------------WNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           LSP+L +G +S  +                 R K            G  + L E+I R+ 
Sbjct: 233 LSPWLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKE 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL-------QAWKQGYTGFPIIDAAMRQL 343
                  +          P   +                 Q W++  T     +AA  QL
Sbjct: 293 LSDNFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQL 352

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN 400
             +G +H  +RM  A  +++         E          +DG   +   G  W+    +
Sbjct: 353 RRVGKIHGYMRMYWAKKMLEWSRSPEEAVEMCVYLNDKYSVDGGDPNGYAGILWSIGGLH 412

Query: 401 DS----VPYF---RIFNPTIQGKRFDPQGTFIRHWL 429
           D      P F   R  +     +++D   ++ + WL
Sbjct: 413 DHPWKERPVFGKIRYMSAEGIRRKYDLD-SYCKRWL 447


>gi|15559004|gb|AAL02090.1|AF348459_1 cryptochrome 1b [Hordeum vulgare]
          Length = 61

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT+
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTE 61


>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
          Length = 464

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 142/433 (32%), Gaps = 23/433 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N AL  A   ++A    ++ VF  T         + R   F+   L  
Sbjct: 27  LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTD---GYPEANLRHYAFMLEGLAD 83

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K L ++GI F   + S  + ++E      L         ++      V  +       
Sbjct: 84  VEKGLRRRGIGFAVRRGSPDEVALEAGRRAALIVTDRGYLRHQVRWRENVAAEAGCRVTQ 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +    + +      +      ++ +    F   L    ++       +  + L+ P
Sbjct: 144 VESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAGAGLGGLDLSDP 203

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D     +  ++  G + A  +LR+F +E +  Y   RD P   G S +S 
Sbjct: 204 GR-VLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQPHAGGVSHMSK 262

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP     R +                 +   +   F R+   +    C+ +  
Sbjct: 263 YLHFGHISPLYVALRARGSGAPEEDVGAFLEELVVRRELAVNFVRYTPNYDSYSCLPEWA 322

Query: 308 IPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               E+   +    +    +  +  T  P  +AAM ++   G++HN +RM     ++   
Sbjct: 323 RSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLHNHMRMYWGKRILGWT 382

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQ 414
                             LDG   ++     W    G    P+         R  + +  
Sbjct: 383 RTPQHAYRTALYLNNRYFLDGRDPNSYANVAWVF--GLHDRPWKERPVFGKVRYMSRSGL 440

Query: 415 GKRFDPQGTFIRH 427
            ++ DP G ++R 
Sbjct: 441 ERKTDP-GAYVRR 452


>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
 gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
          Length = 453

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 136/444 (30%), Gaps = 38/444 (8%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A      S A ++ VF   P      G + RQ  F+ A L +
Sbjct: 22  VYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + +L    I               +L        V        ++   V+R       +
Sbjct: 79  TEAALRAHSIPLAVLTGEPGFTVPAFL------HSVDAGVCVTDFDPLRVKRVWKAAVAV 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D   + P                P    L+   ++        PA  L G 
Sbjct: 133 ASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKPFPDLPTFPAANLDGF 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                             P       G   A  +L  F ++++  Y  +R+ P    TS 
Sbjct: 193 APVDWRAAADFVQADPSVPPVTGIVPGSAAATQVLDDFLRDRLEGYAARRNDPNAGATSG 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY   G L+P++      E          +        ++ RE   +   + P     
Sbjct: 253 LSPYFHFGQLAPQRAALATLEARSRAKEGADAFLEEL---VVRRELADNFCLYEPEYDSF 309

Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W  K       +     +  + +    T   + +AA RQL+  G +H  +RM  A
Sbjct: 310 EALPEWARKTLAAHAADSRPYLYDRETFAAATTHSALWNAAQRQLSREGRIHGYMRMYWA 369

Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++             +   +  LDG   +   G  W+   G    P+         R
Sbjct: 370 KKILEWSGSPREALETALFLNDRFALDGRDPNGVVGVLWSVG-GLHDRPWANRPVYGQVR 428

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPE 431
             N     ++FD    ++  + PE
Sbjct: 429 YMNERGCRRKFDVDA-YVARY-PE 450


>gi|296084158|emb|CBI24546.3| unnamed protein product [Vitis vinifera]
          Length = 704

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV ++W ++DLRI D+  L AA       VI +++       +   S      +  ++  
Sbjct: 44  SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSR--FSDEMLELVLVAMED 100

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL  +G          F  + + +     + + T +F   + E    +    +++ L
Sbjct: 101 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 156

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               + +   + V+          L+            +Q  + + L    +P++ +   
Sbjct: 157 ATAPLLERSPEVVMWHTPFYDIKDLKYL-PPLHHDFKKLQLPITSPLGPPRLPSVEIGLD 215

Query: 188 VTP 190
             P
Sbjct: 216 WGP 218


>gi|213423099|ref|ZP_03356117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 47

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 40/47 (85%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR
Sbjct: 1   LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIR 47


>gi|240256063|ref|NP_194259.4| DNA photolyase [Arabidopsis thaliana]
 gi|332659635|gb|AEE85035.1| DNA photolyase [Arabidopsis thaliana]
          Length = 692

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW ++DLR+ D+  L AA  +    VI +++       ++     +   I  +L  
Sbjct: 35  STAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDTLELAII--ALED 90

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           ++K+L ++G          + ++   ++    + R   +F   + E +
Sbjct: 91  LRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYH 134


>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
          Length = 528

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 134/440 (30%), Gaps = 33/440 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A          +   F   P          RQ  F+ A L +
Sbjct: 98  VYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATT---RQFRFMLAGLRE 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+    Q GI F   +      + E L  +    ++  +  +            LL +RL
Sbjct: 155 VETEALQLGIAFHVLK----GSAPEALPRFVEHHKIGCVVADFNPLRVVREWCSLLCERL 210

Query: 128 QHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +     D   ++P   + +      +   P     +   +         P      
Sbjct: 211 RGMRVSVVQVDAHNIVPAWVVSDKQEAGARTMRPKIHRHLPAFLTEYPPVAVHPVSGPAS 270

Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                            +        G + A  +L  FC E+++ Y + R+ PA  G S 
Sbjct: 271 VRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGLSN 330

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +SPY   G ++ ++                 S        ++ RE   +      +    
Sbjct: 331 MSPYFHFGQIAVQRAV---LVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSV 387

Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W         +   +        +   T   + +AA  Q+   G MH  +RM  A
Sbjct: 388 EGASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMHGFMRMYWA 447

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQ 414
             +++  +                 LDG   +   G  W+    +D     R +F     
Sbjct: 448 KKILEWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDRAWAERPVFGKVRY 507

Query: 415 G------KRFDPQGTFIRHW 428
                  ++FD  G +IR +
Sbjct: 508 MSYSGCLRKFD-VGCYIRRY 526


>gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 711

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 7   MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS     +VW ++DLR  D+  L  A       VI +FI     +   G S  +   ++ 
Sbjct: 1   MSGKKTAIVWFKHDLRTDDHPGLAFAAQYD--HVIPLFIFDSSFYA--GCSEERLASLFD 56

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           ++  +++SL   G      +        + L +   +   + +    + E    
Sbjct: 57  AVADLRRSLKSIGSTLVIRRA----RVNDVLLNLAQEVGASTIIAEEEVEEIWH 106


>gi|15559012|gb|AAL02094.1|AF348463_1 cryptochrome 1 [Musa acuminata]
          Length = 61

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PTQ
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTQ 61


>gi|225455683|ref|XP_002265202.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 718

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV ++W ++DLRI D+  L AA       VI +++       +   S      +  ++  
Sbjct: 58  SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSR--FSDEMLELVLVAMED 114

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL  +G          F  + + +     + + T +F   + E    +    +++ L
Sbjct: 115 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 170

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               + +   + V+          L+            +Q  + + L    +P++ +   
Sbjct: 171 ATAPLLERSPEVVMWHTPFYDIKDLKYL-PPLHHDFKKLQLPITSPLGPPRLPSVEIGLD 229

Query: 188 VTP 190
             P
Sbjct: 230 WGP 232


>gi|15559006|gb|AAL02091.1|AF348460_1 cryptochrome 2 [Hordeum vulgare]
          Length = 61

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD D  S+  GWQ+ +    D     R+ NP +QG+++DP G ++R W+PEL  +P +
Sbjct: 3   LLDADRESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARMPGE 61


>gi|15559014|gb|AAL02095.1|AF348464_1 cryptochrome 2 [Musa acuminata]
          Length = 61

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     R+ NP + G+++DP G +IR+W+PEL  +PT+
Sbjct: 3   LLDADLESDILGWQYVSGSLPDGHELKRLDNPEVLGQKYDPDGEYIRNWIPELARLPTE 61


>gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
 gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
          Length = 510

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 30/405 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A   +   D  V  VF             AR   F+   L  
Sbjct: 64  VYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFLLRGLRV 120

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K+L + GI F   +        + + S+      + L  +             +  RL
Sbjct: 121 VEKNLDKLGIAFFLLR----GRPEDTIPSFVEACNASILVLDFSSLRIGRTWRTGVVSRL 176

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPV 179
                    +          +      Y   T   K   Q          ++   +  P 
Sbjct: 177 GADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLEPFSKPWPG 236

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A       +  +           +D   P  +     +          Y  E+ D   +
Sbjct: 237 VAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAVFLSSRLQRYSAERNDPSKL 296

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S LSPY   G LSP++C   +++      +  +S        +I RE   +   + P
Sbjct: 297 ERLSDLSPYFHYGQLSPQRCAFEVRKA---RKLHMQSVDSFLEELIIRRELSDNFCYYQP 353

Query: 300 SVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    +    W          +  +  +  Q  + G T   + +A+  ++   G MH  +
Sbjct: 354 NYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMVHRGKMHGFM 413

Query: 354 RMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395
           RM  A  +++                    LDG   +   G  W+
Sbjct: 414 RMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWS 458


>gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
 gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
          Length = 487

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 114/397 (28%), Gaps = 17/397 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN AL  A   ++   +               + R   F+   L  +++
Sbjct: 52  VYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPHANLRHYAFLNQGLPDIEE 111

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             + +G+ F   +        E  + +        +  +        R    L K L+  
Sbjct: 112 DCAARGVGFVMRRA-----PEEDHERFFADVDAAMVIGDENPMREPERWRAKLAKSLRVP 166

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                 D  V          +  + +           +  +           R       
Sbjct: 167 FWTVDADVIVPSKLLEKAQFSAGVARPRLYRALPEFLHDYENPAALKVWRKPRGLHTDDI 226

Query: 191 SNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     F         +  G   A+  L  FC + +  Y   R+ P + G+S+LSP
Sbjct: 227 REDMTRGWKDFDRSVLPVAAWQGGHHAAMKRLHLFCGQMLETYDRDRNHPELDGSSKLSP 286

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G L P      L  +         +    +   ++WRE   + + + P        
Sbjct: 287 YLHFGHLGPLTIALALNAQVKRQPKLAAARDSYFNELIVWRELAVNFVRYQPEYDSPGCA 346

Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA--- 358
             W        D    +            T   + +AA  Q+   GWMHN LRM  A   
Sbjct: 347 DNWARATIAEHDRDEREVLYTLAQLEGARTHDELWNAAQLQMVRYGWMHNYLRMYWAKKI 406

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
               ++     +          LDG   +   G  WA
Sbjct: 407 VEWTRNTATAMKWAIYLNDRYFLDGRDPNGYAGVAWA 443


>gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 506

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 118/396 (29%), Gaps = 11/396 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WL  D R+ DN AL  AC  + A    V IA     +  G  ARQ  F+   L +++ 
Sbjct: 30  VYWLSRDQRVRDNWALLRACDVARANDAPVVIAFNLLTKFLGAGARQFGFMLRGLRELEG 89

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +   K + F          +I+ L      + +   F   +  +   +    L +     
Sbjct: 90  AAKAKNVTFAMTYGDEPAIAIDALAKKIGAKTIVCDFSPLRDGLKWRKELAALCEARSAH 149

Query: 131 VICKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  + V     S            ++   + + L +     D              
Sbjct: 150 CEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLHEFPEVPDDLPKYSGPALDAVK 209

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                                  GE  A  +L  F   ++  Y ++ D    Q  S LSP
Sbjct: 210 WDDIIAEALSRGQAVPEVTWAIPGETAAHAVLDDFVNSRMKLYEKRNDPSKPQALSGLSP 269

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFYPSVCMG 304
           +L  G +S ++C    K+             F       EL     Y             
Sbjct: 270 WLHFGQISGQRCALEAKKAVGKASPPAYESFFEELVVRRELSDNFCYYSPKYDQIEGQKY 329

Query: 305 KPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                       +     + L+  ++  T   + +AA R+L   G MH   RM  A  ++
Sbjct: 330 DWAKDTLRLHASDKRPYLYSLEELERAKTHDDLWNAAQRELRYGGKMHGFCRMYWAKKIL 389

Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           +      +  +       +  LDG   S   G  W+
Sbjct: 390 EWTESPEQALKFAIYLNDTYSLDGRDPSGYVGCMWS 425


>gi|238606859|ref|XP_002396828.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
 gi|215470103|gb|EEB97758.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
          Length = 134

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSV---PYFRIFNPTIQGKRFDPQGTFIRHWL 429
            E++ S L+D D+ASN G W + A  GND        R FNP  Q   +D +G ++R W+
Sbjct: 3   AEWYESLLIDYDVASNYGNWAYVAGVGNDPRASEGEPRKFNPVKQAFDYDAKGEYVRTWI 62

Query: 430 PELN--NVPTQYIHAPHSWLDKND 451
            E N  N+  +++      L+K+D
Sbjct: 63  GEFNGFNMKEEWLFQAWKALEKDD 86


>gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus]
 gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus]
          Length = 466

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 120/398 (30%), Gaps = 23/398 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D RI DN A   A      + A +   F              RQ HF+   L  
Sbjct: 38  VYWMSRDSRIEDNWAFLYAQQIAIQNQAPLHVCFCLVTWFCN---AGMRQFHFLLEGLKF 94

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           VQ+   +  + F     S      + L  +C +  V  +  +    +  +     L+K L
Sbjct: 95  VQQECKRLNVSFHLLDGSGD----QVLLDWCNRNDVDVIVCDFNPTVKPMEWIHNLKKTL 150

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     D   +LP    L+            RK         D +  P    +    
Sbjct: 151 PGHMSLTQVDAHNILPCWRQLSAPSTHSFRKIAVRKLNRYLTQFPDAKVHPYGTAKFPHV 210

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              + +                 G   A+    KF K ++  Y E R+ P     S LSP
Sbjct: 211 DWDALLQSRNADTSVEPVTWAEAGYHGAIKTFTKFVKCRIQSYHELRNKPTEAVCSNLSP 270

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S ++    +K                     I RE   +   +       +  
Sbjct: 271 WLHFGQISAQRVILHVKSLTNVKGDNI---DTFVDECFIRRELADNFCFYTKRYDSIEAS 327

Query: 308 IPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            P          + +  +  + L+ ++   T   + +AA  QL   G MH  +RM     
Sbjct: 328 APNWALITLKAHEKDRRQYVYSLKVFENADTHDLLWNAAQIQLVREGKMHQYMRMYWCKK 387

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           +++                    LDG   +   G  W+
Sbjct: 388 ILEWSDDAQTALNYAIYLNDKYSLDGRDPNGYVGCLWS 425


>gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP-6]
 gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Methanosaeta
           concilii GP-6]
          Length = 445

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 118/398 (29%), Gaps = 27/398 (6%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  + R+ DN  L  A        + +  +F  +P+          Q  F+   L +V
Sbjct: 23  YWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQFLEATSS---QYKFMLKGLEEV 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L++  I           D  + +  +        L  +      ++   + + K   
Sbjct: 80  ETDLAELNIPLYLLS----GDPAKEIPQFLQSHEAGILVSDFSPLRIKMIWQRSIAKE-V 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +    +    +++    + L      Y       + L + L                   
Sbjct: 135 NIPCYEVDGHNIVPCWQASLKQEWAAYSFRPKIHRLLDEYLTDFPALKAHPFPWPEAVDN 194

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                         +       GE+ A   L +F  + +  Y   R+ P   G S LS Y
Sbjct: 195 DWRGAEMAIRADHISDMSWAQPGERAAKKHLNEFIDQGLVLYDSDRNNPVKNGQSGLSFY 254

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +S ++            L      +      ++ RE   +   + P     + F 
Sbjct: 255 LHFGQISAQRVALMA-------LSGMTDSSPFLEELVVRRELADNFCYYNPHYDSVQGFP 307

Query: 309 PWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            W ++     ++   +         +  T   + +AA  ++   G MH  +RM  A  ++
Sbjct: 308 NWAQETLRQHENDPREYLYSIKELEEAKTNDELWNAAQTEMVCRGKMHGYMRMYWAKKIL 367

Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           +         +          LDG   +   G  W+  
Sbjct: 368 EWTSSPAEAMDIAIYLNNRYELDGRDPNGYTGIAWSIG 405


>gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
 gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
          Length = 321

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 5/246 (2%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
           +++  V   L   P P            + +  +  F   +      +        +  +
Sbjct: 1   MLEQPVPPPLAWDPAPGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKR 60

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +   Y   R+      T  LSP++  GVL+  +  + +  +  +   +   G    +NE
Sbjct: 61  VEAKRYGRSRNHLDGAVTG-LSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDG-AKLINE 118

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++ + +              T     +    L    ++G TG   +DA  R+L 
Sbjct: 119 LGWRDFWQRMWSDLGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAFQRELV 178

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T GW+HN  RM  A+++V    V W+ G ++F+  LLDGD ASN+  WQW AS+     P
Sbjct: 179 THGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSHKP 237

Query: 405 YFRIFN 410
           YF  FN
Sbjct: 238 YF--FN 241


>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
 gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
          Length = 472

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 140/437 (32%), Gaps = 32/437 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D RI DN AL  A   +    I +   F   P     H  ++R   F+   L +
Sbjct: 31  LYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVP---GFHTTTSRHFSFLLDGLKE 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +   +  I F     + +      + S   + +V  +  +        +  K +   L
Sbjct: 88  IAEECIKLSIGFN----AVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPEKLIKQVTSVL 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             +V+    D   ++P     +      +        ++   +         P    +  
Sbjct: 144 PDKVVFIQVDAHNIVPCWEASHKQEYGARTLRKKINGMLDTYLTEFPVITKHPYGPFS-- 201

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V+ +N                  G + A  +L  F K ++  Y    + P  +  S LSP
Sbjct: 202 VSIANNKGVEFDDTVHPVSWAVPGSKAAFKVLDDFLKNRLAAYESDHNNPTCEALSNLSP 261

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S ++      +      I PKS +      +I RE   +   +       +  
Sbjct: 262 WLHFGHISAQRVVLETLKY---KSIHPKSVSVFLDEIIIRRELADNFCYYNKRYDSIEST 318

Query: 308 IPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W  +      +   +         +  T  P+ ++A  Q+  +G MH+ LRM  A  +
Sbjct: 319 HSWARETLEAHVNDRRKYIYSLKQLERAETHDPLWNSAQIQMVRLGKMHSFLRMYWAKKI 378

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411
           ++                    LDG   +   G  W+    +D            R  N 
Sbjct: 379 LEWTRSPKEALRYSIYLNDKYELDGTDPNGYVGCMWSICGLHDRAWSERPIFGKVRYMNY 438

Query: 412 TIQGKRFDPQGTFIRHW 428
               K+FD    FI  +
Sbjct: 439 EGTKKKFDVNA-FISKY 454


>gi|18391386|ref|NP_563906.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana]
 gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana]
 gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana]
 gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana]
          Length = 490

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 125/402 (31%), Gaps = 27/402 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F+   L Q
Sbjct: 31  VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +    I F   Q     D+ E + ++  +   + L  +        R    + KR 
Sbjct: 88  LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180
              +     D   ++P  +  +      +        L          L     +   + 
Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237
             +L    +  +           I+   P    G +  +     F  +++  Y   R+ P
Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G +S ++C     E        P++        ++ RE   +   
Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           + P     K    W  K   +  S   +           + A   ++   G MH  +RM 
Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLEMVYQGKMHGFMRMY 380

Query: 357 TASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
            A  +++                    +DG   S   G  W+
Sbjct: 381 WAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 422


>gi|167919770|ref|ZP_02506861.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 176

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +                    D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A  
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPP 169


>gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus]
          Length = 132

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 14  MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 73

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 74  DLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 132


>gi|167816640|ref|ZP_02448320.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 168

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +                    D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAP 168


>gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena
           variabilis ATCC 29413]
 gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Anabaena variabilis ATCC 29413]
          Length = 278

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVLS R+  + + +      +K    A   +NEL WR+
Sbjct: 51  YAKTRNFLTGDVTR-LSPYIRYGVLSLREIRDYVLD-----NVKHSDDATKLINELGWRD 104

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L     +          T        S L    K+G TG   ID+  R+L   G++
Sbjct: 105 YWQRLYVKLGNGIWEDQEEYKTGYTPAEYASDLATDIKEGKTGLVCIDSFSRELRETGYL 164

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN +RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  F
Sbjct: 165 HNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 221

Query: 410 N 410
           N
Sbjct: 222 N 222


>gi|212275864|ref|NP_001130328.1| hypothetical protein LOC100191423 [Zea mays]
 gi|195612420|gb|ACG28040.1| deoxyribodipyrimidine photolyase family protein [Zea mays]
          Length = 706

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW ++DLRI D+  L AA       V+ +++         G S +    +  +L  ++
Sbjct: 46  AVVWFKHDLRIDDHPGLAAAVSEPRRPVVPLYVFDRRILA--GYSDKMLELLLFALKDLK 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L  +             ++ + +     + +   +F   + E         +E  L +
Sbjct: 104 MTLKSQDSDLLI----GLGNAEDVVLKLVNEVQAGLVFTEEEVEYRVRDVLANVESSLSN 159

Query: 130 RVICK 134
                
Sbjct: 160 GSFSW 164


>gi|18874061|dbj|BAB85485.1| cryptochrome [Sarcophaga bullata]
          Length = 81

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
            P    KR DP G +I+ ++PEL NVP +YIH P              + ++YP  ++D 
Sbjct: 7   CPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDL 66

Query: 464 KKACHHTLNQYYAAK 478
             AC          +
Sbjct: 67  NVACKRNTIAMRTLR 81


>gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana]
          Length = 505

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 125/379 (32%), Gaps = 30/379 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F+   L Q
Sbjct: 31  VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +    I F   Q     D+ E + ++  +   + L  +        R    + KR 
Sbjct: 88  LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180
              +     D   ++P  +  +      +        L          L     +   + 
Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237
             +L    +  +           I+   P    G +  +     F  +++  Y   R+ P
Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL  G +S ++C     E        P++        ++ RE   +   
Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350
           + P     K    W  K   +  S   +         +G T  P+ +A+  ++   G MH
Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMVYQGKMH 380

Query: 351 NRLRMITASFLVKDLLVDW 369
             +R + +   +  +L + 
Sbjct: 381 GFMRQVKSFIWILTVLYNS 399


>gi|15559000|gb|AAL02088.1|AF348457_1 cryptochrome 2 [Cucumis melo]
          Length = 61

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     R+ +P IQG ++DP G +IRHWLPEL  +PT+
Sbjct: 3   LLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTE 61


>gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis]
          Length = 444

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 107/395 (27%), Gaps = 19/395 (4%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            D R+ DN AL  A   +  + + V +A           ARQ  F+   L  +Q  L   
Sbjct: 3   RDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQAL 62

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVT---KLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            I     +     D +E +         +     F   +   +         K   H V 
Sbjct: 63  NIPLFLLK----GDPLETVPQLVKDTGASLLVTDFAPLRLGRHWREGVAAKIKVPFHEVD 118

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
             +     +              K+++   + L +                         
Sbjct: 119 AHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLEPQPEWSSGVTPEAVDWDALL 178

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------DIPAIQGTSQLS 246
                             GE  A+  L              R      D       S LS
Sbjct: 179 AEVLERGKEVPEVRWCAPGEDAAMEALSGPKGFLGSKARLARYEEKRNDPTVPDALSGLS 238

Query: 247 PYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYL  G LSP R      + + V             +   +   +  ++  +        
Sbjct: 239 PYLHFGHLSPQRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDSLDAAYD 298

Query: 306 PFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                      +K  H+     +++G T   + +AA  ++   G MH  +RM  A  +++
Sbjct: 299 WARQTLNDHRGDKREHVYTREQFEKGQTHDKLWNAAQAEMVHFGKMHGFMRMYWAKKILE 358

Query: 364 DLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWA 395
                        +   +  LDG  A+   G  W+
Sbjct: 359 WSASPEEALEISIWLNDKYELDGRDANGYVGCMWS 393


>gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 264

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVLS R+    +     +     K      +NEL WR+
Sbjct: 51  YAKTRNYLTGAVTR-LSPYIRHGVLSLREVREYILNTVENSEDGSK-----LINELGWRD 104

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L                T     +    L +  ++G TG   ID+  ++L   G++
Sbjct: 105 YWQRLYMKLGKGIWENQEEYKTGYHRGDYSHTLPEDIREGKTGMVCIDSFSQELRVTGYL 164

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN +RM  AS+++    + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  F
Sbjct: 165 HNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVAST-FSHKPYF--F 221

Query: 410 N 410
           N
Sbjct: 222 N 222


>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
          Length = 523

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 128/400 (32%), Gaps = 25/400 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R+ DN AL  A   +      +   F   P          RQ  F+   L +
Sbjct: 82  LYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLGAT---IRQFGFMLKGLEE 138

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+    +  I F   +     +S   +     + ++  +  +       +     +++ +
Sbjct: 139 VETECQKLKIEFHLLK----GESQICVPDLITKLKLDAVVADFSPLRVPLSWIDKVKESI 194

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P     +      + +       L + L +     +     +   
Sbjct: 195 PKNVPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPPVIVHPHPAKTKA 254

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                     +    + +        G ++ L  L  FC+ ++  Y E+R+ P +   S 
Sbjct: 255 KSVDWKAADAYLEVDRTVGEVDWITPGTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSN 314

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +S ++C   +K           +        +I RE   +   +  +    
Sbjct: 315 LSPWLHFGQISAQRCILEVKGYKTKHAKSVDAYMEE---TIIRRELSDNFCFYNTNYDNL 371

Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           K    W ++           A       ++G T   + +A+  QL   G MH  LRM  A
Sbjct: 372 KGAANWAQETLEVHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRMYWA 431

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
             +++                    LDG   S   G  W+
Sbjct: 432 KKILEWTETPEEALRIAIYLNDRYSLDGRDPSGYVGCMWS 471


>gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
 gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
          Length = 824

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 119/410 (29%), Gaps = 16/410 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L WLR  +R  +N AL  A   ++   + + +      +    S RQ  F+   ++ +  
Sbjct: 40  LYWLRTAMRAHENPALDLAIEFANQLALPLVVYQGLSEKYPYASDRQHRFVIEGMINLAS 99

Query: 71  SLSQKGIVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + ++GI +     +  + +  ++ L +        ++  +       +           
Sbjct: 100 EMRERGIHYLPHIERGEHREPYLQKLAAQAAVVITEEMPVDPLRRWTSLASRHTTGPVYT 159

Query: 129 HRVICKSFDDSVLLPPGS---ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               C      +           + A   Y           Q   +       +    ++
Sbjct: 160 VDTACVWPMPRMPQSYDRAFAFRDAAGDYYDKNLTLPWDEEQLTSRPTPELADIEPTPIS 219

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  I         A       G         +F +  +  Y  +R+ P    TS++
Sbjct: 220 PQNIAEIIAACEIDHTLAAAAETRGGSVAGYERWNQFRQTGLRNYAARRNDPLHPTTSRM 279

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G++SP +       +      K       W        ++   +    ++    
Sbjct: 280 SAYLHYGMVSPLRIAREASAQGGAGAEKYLDELLVWRELAYNYCYFHRAIDRLSTLPRWA 339

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                    +   + +  +   +G T   + +   + L   G +HN LRM     L+   
Sbjct: 340 QETLAQHAGDRRPNIYSWEQLARGQTDDELWNLTQQSLLRHGELHNNLRMTWGKRLLDWT 399

Query: 366 LVDWRIGEEYF---MSQLLDG-DLASNNGGWQWAASTGNDSVPYFRIFNP 411
                             LDG D AS  GG  W          + R F+P
Sbjct: 400 ASPHDALAMAIDLNHRYALDGRDPAS-YGGLLWCFGL------FDRPFHP 442


>gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 426

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSP+++ G LS R+    L E++              + E  WRE
Sbjct: 28  YSRTRNFLDGAVTG-LSPWITHGYLSVREAAQLLMEKYRLSFE------DKLIFEFAWRE 80

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++H  A   +  +     P        +    +   ++G TG   IDA +  L   G++
Sbjct: 81  FFKHAHAELGNGILSDVRRPVWSGKYNQQLPEDI---REGRTGVEAIDAGVALLYETGYL 137

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRI 408
           HN +RM  AS++V    V W++G ++  + LLDGDLASN+  WQW A T     PY F  
Sbjct: 138 HNHVRMWIASYVVHMRKVHWKVGADWMYAHLLDGDLASNHLSWQWVAGT-FSHKPYVFNA 196

Query: 409 FNPTIQGKRFD 419
            N      ++D
Sbjct: 197 DNVKKYAPKWD 207


>gi|297799464|ref|XP_002867616.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313452|gb|EFH43875.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 557

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW ++DLR+ D+  L A+  +S   VI +++       ++     +   I  +L  
Sbjct: 31  STAVVWFKHDLRVDDHPGLLASSKHS--SVIPLYVLDRRILSRYTTDTLELAII--ALED 86

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           ++K+L ++G         ++ ++   +     + R   +F   + E +
Sbjct: 87  LRKTLKKQGSNLML----SYGNAENVIADLVKEVRAHSVFVEEEVEYH 130


>gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
 gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
          Length = 262

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVLS R+    +     +     K      +NEL WR+
Sbjct: 51  YAKTRNYLTGAVTR-LSPYIRHGVLSLREVREYILNTVENSEDGSK-----LINELGWRD 104

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L                T     +   +L +  ++  TG   ID+  ++L   G++
Sbjct: 105 YWQRLYMKLGKGIWENQEEYKTGYHTEDYSHNLPEDIQESKTGLVCIDSFSQELRVTGYL 164

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN +RM  AS+++    + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  F
Sbjct: 165 HNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVAST-FSHKPYF--F 221

Query: 410 N 410
           N
Sbjct: 222 N 222


>gi|15559002|gb|AAL02089.1|AF348458_1 cryptochrome 1a [Hordeum vulgare]
          Length = 61

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLPEL  +PT+
Sbjct: 3   LLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPELARLPTE 61


>gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
          Length = 636

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%)

Query: 16  NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            DLR+ +N AL     A    +  ++ + +  P    Q     R   F      +V+  L
Sbjct: 90  RDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLAFQPT--RRHLSFFIGGAREVEAEL 147

Query: 73  SQKGIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               I F      +        E            +               +++E   + 
Sbjct: 148 KSLNIGFELPIVAKKDPKGRLDEANKKIEEVFAALQPALAVCDFNPLRLPTQIVEALARV 207

Query: 130 R----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                      D   ++P     N A    +   P  +A+++       +  P P    +
Sbjct: 208 YGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKLQAMLKEFAVPFPKVEPHPVPWTS 267

Query: 186 GPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             + P +  R        P + +D   P  +     +      + +  Y + R+ P    
Sbjct: 268 KQLFPLDEDRVLSAVKPDPPEPLDSWKPGTKAALRLLQSFATPQNIAKYGKARNDPLADC 327

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPS 300
            S LSPY+  G ++ ++C   + +       +    G  ++++E++ R        F+  
Sbjct: 328 QSDLSPYIHFGHIAVQRCLMEVSKLKDTTGDRAVHEGVRAFIDEVVVRSQLSDNFVFFNP 387

Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                   P            +  +  +   A ++G T   + +AA  QL   G MH  L
Sbjct: 388 HYDDIKGAPDWAKQTLEKHAKDKREPQYEFTALEEGKTYDSLWNAAQLQLVRDGKMHGYL 447

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS----TGNDSVPYF 406
           RM  A  L++         +          LDG   +   G  W+       G    P F
Sbjct: 448 RMYWAKKLLEWTKSPQEALKTAIALNDKYHLDGTDPNGVTGCMWSIGGVHDQGFKERPVF 507

Query: 407 ---RIFNPTIQGKRFDPQGTFIRHW 428
              R  N     ++FD +  F+R +
Sbjct: 508 GKIRYMNYPGCERKFDVKA-FVRKF 531


>gi|167903518|ref|ZP_02490723.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 224

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL     +L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A  
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPP 217


>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 129/393 (32%), Gaps = 15/393 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + V +           + R   F+   L + Q+
Sbjct: 24  LYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPEANYRHYLFMLEGLAETQR 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++GI     + S    +++      L         +++    +V      +      
Sbjct: 84  QLRERGIPLVVLENSPPLAALDLGKKAALIVTDKGYMRHQREWRAQVAEQASCQVVQVET 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    + +      +      ++ +    F     +  ++  +R   +  + L+ P + 
Sbjct: 144 DVIVPVNIASQKAEWAARTIRPKINRELDNFLLLPEKCALKNKVRDFDIQGLDLSDPASL 203

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  + P   +   F  G   A   + KF ++ +  Y    + P +   S + PYL 
Sbjct: 204 LKNLGMPETP-PGVSAFFKGGASAAQKRMDKFIQKSLDNYSRHHNRPDLADVSGMGPYLH 262

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +S                  P++ A      ++ RE   + + F P+         W
Sbjct: 263 FGQVS---AAALALRVKNLKDADPEAQAAYLEQIIVRRELAMNFVHFTPNYDQYACLPTW 319

Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     +     +     +   T  P  +AAMR++   G+MHN +RM     +++ 
Sbjct: 320 AQKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRMYWGKKILEW 379

Query: 365 L---LVDWRIGEEYFMSQLLDG-DLASNNG-GW 392
                  W +         LDG D  S  G GW
Sbjct: 380 SPSPQKAWDVLLYLNNKYFLDGRDPNSYAGVGW 412


>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea]
 gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea]
          Length = 491

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 141/445 (31%), Gaps = 35/445 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++ +   V +A        G +ARQ  F+   L  +Q 
Sbjct: 30  VYWMFRDQRVRDNWALIHAVDEANKRNAPVAVAFNLFDGFKGANARQLGFMLRGLKLLQA 89

Query: 71  SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL +   I F   Q     + +E +  + ++   + L  +           + L KR+  
Sbjct: 90  SLHNSLHIPFFLFQ----GEVVETIPKFLVECGASLLVTDFTPLREIRGFKEELCKRVGD 145

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL-PVPA 181
            V     D   ++P     +      +        L+         L   +       P 
Sbjct: 146 SVSIHEVDAHNVVPVWEASSKLEYGARTIRTKINKLLPTYLTDYPILQPPNCSWESSSPV 205

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           I+    +                 P      +        F  +++  Y   R+IP    
Sbjct: 206 IQWDQLIEDRLKKGAEVPEIDWCKPGETAALEVLKGSQNGFLTKRLKSYATDRNIPLKPG 265

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL  G +S ++C    +           +        ++ RE   +   + P+
Sbjct: 266 ALSGLSPYLHFGQISAQRCAFEARNVRKVAPEAVDAFTEEL---IVRRELADNFCYYQPN 322

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    W  K   +  S   +         +  T  P+ +A+  ++   G MH  +R
Sbjct: 323 YDSLMGAWEWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQLEMVHFGKMHGFMR 382

Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS----VPYF- 406
           M  A  +++                    +DG   +   G  W+    +D      P F 
Sbjct: 383 MYWAKKILEWTSGPEEALAIAIYLNDKYEMDGRDPNGYVGCMWSICGLHDQGWRERPVFG 442

Query: 407 --RIFNPTIQGKRFDPQG--TFIRH 427
             R  N     ++F+  G   ++R 
Sbjct: 443 KIRYMNYAGCKRKFNVDGYIAYVRK 467


>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
          Length = 247

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 4/229 (1%)

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             +    + +   +I+   P                       G +     + +      
Sbjct: 22  KEISDHCKPIDADSIKFDIPSLDELEFDESGLNPLKYPGGETEGLRRLNMYMARREWVCK 81

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           +             T+ LSPY+S G LS +  +++LKE    +         S L +L+W
Sbjct: 82  FEKPNSSPNSLEPSTTVLSPYISHGCLSAKLFYHKLKEVLNSMR--HTEPPVSLLGQLMW 139

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE + +                   +I W K+   L AW +G TG+P +DA MRQL   G
Sbjct: 140 RE-FYYTAGAGTENFDKMVGNSVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEG 198

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           W+H+  R + A FL + DL + W  G + F   LLD D + N G W W 
Sbjct: 199 WIHHLARHMVACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247


>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
          Length = 469

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 122/392 (31%), Gaps = 6/392 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++A  + + +           + R   F+   L   Q+
Sbjct: 26  LYWMQQSARAEHNPALEYAIQQANAAKLPLLVGYGLMDGYPEANVRHYRFLLEGLQDCQR 85

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+ + I F   +    + +++      L         +++     +             
Sbjct: 86  TLAHRKIPFALQRGPPDEVALKLSRQAALVVCDRGYLRHQKQWRQTLAAKASCPVVQVEA 145

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    + +      +      ++++++  +        ++ D   L V  + L   V  
Sbjct: 146 DVVVPVEAASGKAEYAARTLRPKIHRLWEEYLVRPTSTPLEVDSLKLGVKGLNL-DDVGA 204

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  D     +   F  G   A  +LR F    +  Y E R  P     S +S YL 
Sbjct: 205 VLDRMALDRSVPPVHHFFRGGTSEAKRVLRGFVTRHLPEYQENRPHPETDHVSHMSKYLH 264

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SP       +E       +        +   + + F  +   +     +       
Sbjct: 265 FGQISPVVVALAAREARALRPQRDTFLEELIVRRELAQNFAEYTPQYDDYTSLPAWARKT 324

Query: 311 TEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +K        +  Q  T  P  +AAMR++   G+MHN +RM     +++     
Sbjct: 325 LAAHAGDKRPFHYTKAQLEQARTHDPYWNAAMREMRYTGYMHNAMRMYWGKKILEWGRTP 384

Query: 369 WRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
                       +  LDG  A++     W   
Sbjct: 385 EEAYRTALTLNNTYFLDGRDANSFTNIGWVFG 416


>gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
 gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
          Length = 495

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 126/414 (30%), Gaps = 30/414 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+++  R+ DN  L AA   +D   + V +           SAR   FI        +
Sbjct: 38  LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQYEINEVRRDKLLEKRL 127
                GI +Q+       D    +D    +  V            E       ++  + L
Sbjct: 98  QAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGVRERVARFAQRVTCRVL 157

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +C            +      ++ ++     + +  +  ++D+ +    ++R T  
Sbjct: 158 AVDSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLATSLRATVA 217

Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +P                             P G   A     +F +  +  Y E
Sbjct: 218 EGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWTRFLEHGLPQYDE 277

Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELI 286
           +R+     +GTS+LSPYL  G +S  +     ++       +D  ++  +          
Sbjct: 278 RRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGVGAANLDAFVQQITTWRELSYNWC 337

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            R      ++  P+           +          L+      TG  + +AA  +L   
Sbjct: 338 VRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLER---AQTGDRLWNAAQTELVQE 394

Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           G +HN  RM+         +D                LDG  A++ GG  W   
Sbjct: 395 GIIHNYPRMLWGKTVLLWTRDYEDARTWLFHLNDKYALDGRDANSVGGIMWCLG 448


>gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
 gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
          Length = 407

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 15/182 (8%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   R+      T  LSPYL  G L+  + ++ +K++F            S L EL WR
Sbjct: 54  QYGRNRNFINGAVT-HLSPYLRHGCLNLNEVFSFVKQKFGLQG-------ESLLMELAWR 105

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F+R +  +  +    +   P            +    KQ  TG P +D  +++L   G+
Sbjct: 106 DFWRQVWFYEGNAIFSEMEQPKVNLDYQPLSVSV----KQANTGLPCMDGFIKELLDTGY 161

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHN  RM  AS++V  L VDWR   ++F + LLDGD ASN+  WQW AST   S PY+  
Sbjct: 162 MHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFASNHLSWQWIAST-FSSKPYY-- 218

Query: 409 FN 410
           FN
Sbjct: 219 FN 220


>gi|167563425|ref|ZP_02356341.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 188

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A   S   VI  ++   E      +      +
Sbjct: 1   MSAVLSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             ++  L+ R I     ++  L  PG ++  + + Y+V+T + +A ++  V A
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHA 167


>gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
 gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
          Length = 467

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 26/422 (6%)

Query: 23  NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           N AL  A   ++   + + +               +AR   F+   L     +L ++GI 
Sbjct: 36  NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F   + +  + +I+      L          ++    E+ R+           +    + 
Sbjct: 95  FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
           +      +      ++ K++  +   +    V      L        G            
Sbjct: 155 TSTKHEYAARTLRPKLRKLWDDYLDPVEPRTVDHPAEGLIQRLKLRDGLDVSDPEKLLAT 214

Query: 199 YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                       F  G   A   L++F +     Y   R+ P     S +SPYL  G +S
Sbjct: 215 LTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311
           P +                   +      ++ RE   + +            +P      
Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331

Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +     +  +   +G T     + AMR++   G+MHN+LRM     +++     
Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420
                          LDG  A++     W     +      +IF     Q +    +FD 
Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451

Query: 421 QG 422
           +G
Sbjct: 452 KG 453


>gi|332141439|ref|YP_004427177.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551461|gb|AEA98179.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 165

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYAS 64
            + W R+DLR+ D  A+   C  + ++V   +I          +    +   +  F+  +
Sbjct: 17  GVFWFRHDLRLHDQPAIAELC-TAVSQVTFTYILDDKCFDDAAFGFSPMGKHRHTFLLQT 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS 96
           L  +++ L+Q+G      + +  +  ++ L++
Sbjct: 76  LSDLKQQLNQRGHELLILKGNTAECIVQLLNA 107


>gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 465

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 126/404 (31%), Gaps = 17/404 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R+ DN  L  A   +  + + +   +   P+         RQ  F+ A L +
Sbjct: 23  LYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLE---AGLRQYAFLLAGLRE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+  L   GI F         D  E +        V  +  +      +    K +   +
Sbjct: 80  VEHGLEAIGIPFFLL----LGDPAEVIPDLARYLAVGAIITDFDPLRIKRGWLKRIAAEV 135

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  V      + V     S               R           L+   VP       
Sbjct: 136 QIAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWNLDWPA 195

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S                 P  GE  A  +L +F  E++  Y   R+ P    TS+LS
Sbjct: 196 NDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAVGRNDPNGGATSRLS 255

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G+LS ++    + +       K        +   +   F  H  A+  +      
Sbjct: 256 AHLHFGMLSAQRVALVVIQADAPQEDKDAFLEQLVVRRELAENFCLHEPAYDSAESFPDW 315

Query: 307 FIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +  + +   +L      +Q  T  P+ +AA R++   G+MH  LRM  A  +++ 
Sbjct: 316 ARRTLDAHQGDPRPYLYSRDELEQACTHDPLWNAAQREMLATGYMHGYLRMYWAKKILEW 375

Query: 365 LLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
                              LDG   +   G  WA   G    P+
Sbjct: 376 SKSPEEAMAVAVRLNDRWELDGRDPNGYAGLAWAIG-GVHDRPW 418


>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
          Length = 444

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 93/312 (29%), Gaps = 34/312 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            +VW R DLR+ DN+AL  A     + ++ V+   P ++ +           ++ F+  +
Sbjct: 110 GIVWFRGDLRLHDNEALARAQAEC-SSLLPVYCFDPREYGKSPQGYDKTGPYRAQFLAEA 168

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L   G               E +     +     ++ + +    ++R +  + 
Sbjct: 169 VADLRAALRAAGSELVVR----VGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRAEAAVR 224

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHAL-----QMYKVYTPFRKALIQNLVQADLRSLPV 179
              +          +  L     L  +L        K         ++  + A      +
Sbjct: 225 AAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQIGGVAVRAALPAPQELHGL 284

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----------ILRKFCKEKVYY 229
           P      P     + +    P  A      IGE  +                        
Sbjct: 285 PLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSPRGGEGEALRQLQRFVAAAGGQAA 344

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---------FS 280
                       ++ ++P+L+ G LSPR+     +           + A           
Sbjct: 345 AGPVAAAHGSNFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGATPAASRPLQAPLEW 404

Query: 281 WLNELIWREFYR 292
              EL WR+F+R
Sbjct: 405 VRFELYWRDFFR 416


>gi|312899443|ref|ZP_07758773.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
 gi|311293313|gb|EFQ71869.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
          Length = 220

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 11/221 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I         L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           + P     + +   +     + +GE+ A   L  F      
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDMICQ 216


>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis]
 gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis]
          Length = 489

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 142/454 (31%), Gaps = 38/454 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V +A     +  G  ARQ  F+   L  +Q 
Sbjct: 28  IYWMFRDQRLRDNWALIHAVDQANKANVPVAVAFNLFDQFLGAKARQLGFMLKGLRLLQG 87

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + ++  I F   Q      + + +  +  +   + L  +        +    +  R+  
Sbjct: 88  KIEERLQIPFFLFQ----GAAEDTIPQFLGECGASLLVTDFSPLREIRKSKDEICMRISD 143

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------VQADLRSLPVPAIR 183
            V     D   ++P            +         + +       ++         A +
Sbjct: 144 TVTIHEVDAHNIVPIWVASEKLEYSARTIRSKINKRLPDYLIDFPALRPPNTMWSAAANK 203

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG---EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                T  +           I+   P      +  +     F  +++  Y   R+ P   
Sbjct: 204 SIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAMEVLMGTKNGFLTKRLKNYSTDRNNPLKP 263

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S LSPYL  G +S ++C     E      + P+S        ++ RE   +   + P
Sbjct: 264 QGLSGLSPYLHFGQISAQRC---ALEARKAQKLCPQSVDSFLEELIVRRELADNFCFYQP 320

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRL 353
                +    W      +  S   +         +  T   + +A+  ++   G MH  +
Sbjct: 321 HYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERAQTADLLWNASQLEMVYYGKMHGFM 380

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405
           RM  A  +++                    +DG   S   G  W+   G     +     
Sbjct: 381 RMYWAKKILEWTRGPEEALAISTYLNDKYEIDGRDPSGYVGCMWSI-CGVHDQGWKERPI 439

Query: 406 ---FRIFNPTIQGKRF--DPQGTFIRHWLPELNN 434
               R  N     ++F  D   T+++ ++ E+  
Sbjct: 440 FGKIRYMNYAGCKRKFNVDSYITYVKRFVSEIKK 473


>gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 512

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 127/413 (30%), Gaps = 33/413 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A      + + +  V+              RQ  F+   L++
Sbjct: 60  VYWMWRDCRVQDNWAMIYAQYLAFKTKSPLYIVYCLPKFYLNST---RRQYQFLIEGLIE 116

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +  ++  I F        D +   L  +  +  +  +  +      +++    + + L
Sbjct: 117 LSEECAELDITFVILD----DSADVVLIDWVRKHDICAVVCDFNPLQLQIKSTVNILQNL 172

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P           Y  +     A ++NL+      +  P   +   
Sbjct: 173 PADVYFAQVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSI 232

Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            + +N    +                     G   A+  L  F +  +Y Y      P  
Sbjct: 233 ESSTNTSIDWSNLLSSRNVDHSVKRIKWTEAGYNAAILRLATFIQCYIYNYKNSIHNPVS 292

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKSGAFSWLNELIWREF 290
              S LSP+   G +S ++    L+         ++ V +     +      N L  REF
Sbjct: 293 SKQSDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKLKNNIEKFIENCLYRREF 352

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIG 347
             +   F  +        P  ++       +   +  +     T   I + A   L   G
Sbjct: 353 ADNFCYFNLNYITFNAASPQIKRYIAKHLRYYTYSLNELEYSQTHDNIWNKAQEDLRENG 412

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL---LDGDLASNNGGWQWAAS 397
            ++  +R+  A  +++                    +DG   S   G  +A S
Sbjct: 413 KIYPFIRVYWAKKILEWTSTPEEALNRAIYLNQKYAVDGCDPSGYVGCLYAMS 465


>gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 340

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 11/198 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  G LS  +  + +  +         +     +NEL WR+
Sbjct: 97  YAKGRNFLDGPVTR-LSPYIRQGALSLAEVRDAVFAKLRSR-----TDGEKLINELGWRD 150

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L                T          L     +G TG   +D  + +L++ GW+
Sbjct: 151 YWQRLWHQLGHGIWRDQEELKTGHHPGAYSPELPGDIAEGRTGLACMDGFITELHSTGWL 210

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A++LV    + W+ G ++F+  LLDGD ASNN  WQW AS+     PYF  F
Sbjct: 211 HNHARMWLAAYLVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASS-FSHKPYF--F 267

Query: 410 NPTIQGKRFDPQGTFIRH 427
           N     +R+   G++ R 
Sbjct: 268 N-RSNLERY-SHGSYCRR 283


>gi|167895132|ref|ZP_02482534.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894]
          Length = 69

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61 IYASLLQV 68
          ++ SL  +
Sbjct: 59 LHGSLRAL 66


>gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
 gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
          Length = 280

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS R+  + + E+  D      + A   +NEL WR++++ L        
Sbjct: 63  TRLSPYIRYGVLSLREVRDDVLEKVQD-----PNDASKLINELGWRDYWQRLYVKLGDRI 117

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T     +    L      G TG   ID+  ++L + G++HN +RM  A+++V
Sbjct: 118 WEDQEEYKTGYSPKDYADQLPADITAGTTGMVCIDSFSQELRSTGYLHNHMRMWLAAYIV 177

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
               + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  FN
Sbjct: 178 HWRRIRWQAGAKWFLEHLLDGDPASNNMSWQWVAST-FSHKPYF--FN 222


>gi|227505176|ref|ZP_03935225.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
 gi|227198225|gb|EEI78273.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
          Length = 178

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W+R+DLR+ DN AL  A   S  +VIA  +  P       + +  + +   SL 
Sbjct: 1   MTT-LYWIRDDLRLHDNPALTWAA--SRGEVIACVLDEPAYPGSRPLGSATAWWRERSLS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           ++  +L+   +           D+   L ++    +V+ + +NR+Y 
Sbjct: 58  RLAANLASYNVPLYRLN----GDARSVLPAFAASHKVSAVCWNRRYH 100


>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 453

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 142/448 (31%), Gaps = 31/448 (6%)

Query: 3   ATTAMSVH----LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISA 55
               M  +    + W++  +R + N +L  A H ++     ++ +F    +      ++ 
Sbjct: 10  NNKKMDKNGDFIIYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKF---SEMNE 66

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           R  +F++ SL   +K+L  +GI F     S      + L+       +       +Y   
Sbjct: 67  RSCYFLFESLKDAEKNLKDRGIRFIVLDSSPL--ITKILEYSKRSVCIITDRAYLKYLRK 124

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
                         ++         +       +      K++      L ++       
Sbjct: 125 IREEVGEKVSVRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKDFEYTKYE 184

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              +  I+    +   +         + +     F  GE  A  IL  F  EK+  Y + 
Sbjct: 185 MNYLDEIKTDFDLEKIHEIIESLNIDKTVRKSNYFTGGENTAKKILENFISEKLEGYSKF 244

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ P ++  S LSPYL  G +SP      + + E     ++          EL     Y 
Sbjct: 245 RNNPELEYQSNLSPYLHFGNISPLFVAKEISKSEKNRESLEEFLEELIVRRELAINFIYY 304

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +                   K + ++  ++   +  ++  T     ++A +++   G MH
Sbjct: 305 NQDYDKFQNMTYLWAYETMNKHKNDQKEYVYSLEILEKSETHDEYWNSAQKEMMVTGKMH 364

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVP--- 404
             +RM  A  +++         E          +DG   +   G  W     + +     
Sbjct: 365 GYMRMYWAKKIIEWTEKFEEAYEIIKYLNNKYFIDGRDENGYAGIAWCFGKHDRAWNERN 424

Query: 405 ---YFRIFNPTIQGKRFDPQGTFIRHWL 429
                R  N     ++FD     I  ++
Sbjct: 425 IFGKLRYMNSNGLKRKFD-----IEKYV 447


>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
          Length = 559

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471
           +DP+G F+R ++P L N P++YI+ P S            + ++YP PIVDH++ C   +
Sbjct: 318 YDPEGKFVRRFVPALRNFPSEYIYMPWSAPLEVQREAGCIVGVDYPKPIVDHEQVCRTNM 377

Query: 472 NQYYAAK 478
            +   A 
Sbjct: 378 ERMRDAY 384



 Score = 40.2 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 12 VWLR-NDLRITDNKALYAACH 31
           W R N LR+ DN AL AA  
Sbjct: 41 HWFRINALRLDDNPALLAAIE 61


>gi|87300685|ref|ZP_01083527.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
 gi|87284556|gb|EAQ76508.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
          Length = 299

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  GV+S  Q  + +++                L EL WR++++ L          
Sbjct: 96  LSPYIRHGVVSLAQVRDLVQQRMAGGPEPVS---EKLLQELAWRDYWQRLWLRLGDGLWE 152

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                 T   E      L     +G TG   IDA  RQL+  GW+HN  RM  A+++V  
Sbjct: 153 NLEPLKTGHPEAAYAPELPGDIDEGRTGLACIDAFARQLSDTGWLHNHARMWLAAYVVHW 212

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             V W+ G  +F+  LLDGD ASNN  WQW AS+   + PY   FN
Sbjct: 213 RRVRWQAGAHWFLRHLLDGDPASNNLSWQWVASS-FSAKPYL--FN 255


>gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120]
 gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120]
          Length = 278

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVLS  +  N + +      +K    A   +NEL WR+
Sbjct: 51  YAKTRNFLTGDVTR-LSPYIRYGVLSLGEIRNYVLD-----NVKHPDDAKKLINELGWRD 104

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L     +          T        S L    K+G TG   ID+  R+L   G++
Sbjct: 105 YWQRLYIKLGNGIWEDQEEYKTGYTPAEYASDLAADIKEGKTGLVCIDSFSRELQETGYL 164

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN +RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  F
Sbjct: 165 HNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 221

Query: 410 N 410
           N
Sbjct: 222 N 222


>gi|148243387|ref|YP_001228544.1| DNA photolyase FAD binding subunit [Synechococcus sp. RCC307]
 gi|147851697|emb|CAK29191.1| DNA photolyase FAD binding domain [Synechococcus sp. RCC307]
          Length = 330

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSPY+  GVLS  +  + +           K      +NEL WR+
Sbjct: 102 YARSRNHLEGMVTG-LSPYIRHGVLSLAEVRDAVFRRIRHRDEGGK-----LINELGWRD 155

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +                T     +    L Q    G TG   +D    QL T GW+
Sbjct: 156 FWQRMWLELGDAIAEDQEEYKTGHPASSYSRELPQDLCDGCTGLACMDGFHEQLVTTGWL 215

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A+++V    V WR G ++F+  LLDGD ASN+  WQW AS      PYF  F
Sbjct: 216 HNHARMWLAAYVVHWRRVHWRAGADWFLEHLLDGDPASNHLSWQWVASC-FSHKPYF--F 272

Query: 410 N 410
           N
Sbjct: 273 N 273


>gi|32475803|ref|NP_868797.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
 gi|32446346|emb|CAD76174.1| probable deoxyribodipyrimidine photolyase [Rhodopirellula baltica
           SH 1]
          Length = 837

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 122/402 (30%), Gaps = 17/402 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W+ N LR  +N AL AA   +    + + +      +    S R   FI      V
Sbjct: 29  MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88

Query: 69  QKSLSQKGIVF------QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           Q+ L  +GI +         +  +  D          ++            +  +    +
Sbjct: 89  QRELQARGITYAFHLERHGQRGPHLRDLCRRAAVLVSEEMPVAPIACWVERLRSLVTTPI 148

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
           +       V  +S D               ++    +   + L  NL+ A          
Sbjct: 149 MLVDTSCIVPSQSVDAVPTRAFEFRRLIQSELENRLSRPYEELPANLLPAKFTGPLGFAP 208

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           I L        I +             P G +       +F ++ +  Y  QR+ P    
Sbjct: 209 IDLQDVDLAELISQCKVDHSVGPVADTPGGMRAGYARWDRFREKSLTQYSRQRNHPDDPL 268

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S+LS YL  G++SP +           +  +          E+++R    H+      
Sbjct: 269 GVSRLSGYLHYGMISPFRIAREAAA----MGARKYVDELVVWREMVFRFCLEHVEDLDTM 324

Query: 301 VCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             + K      EK   +        +   +G +   + + A R L   G +H+ LRM   
Sbjct: 325 AVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGELHHNLRMTWG 384

Query: 359 SFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
              +       +   +         +DG    +  G  W+  
Sbjct: 385 KAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFG 426


>gi|186686489|ref|YP_001869685.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
 gi|186468941|gb|ACC84742.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
          Length = 295

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVLS R+  + + ++               +NEL WR+
Sbjct: 55  YAQTRNFFTGAVTR-LSPYIRYGVLSLREIRDYVLDQVQQKNDA-----TKLINELGWRD 108

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L                T          L Q  +QG TG   ID+    L   G++
Sbjct: 109 YWQRLYVKLGDEIWKDQEEYKTGYTVAEYLPELPQDIRQGTTGRVCIDSFSHDLKETGYL 168

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST     PYF  F
Sbjct: 169 HNHARMWLAAYIVHWRRIGWQAGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 225

Query: 410 N 410
           N
Sbjct: 226 N 226


>gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis]
 gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis]
          Length = 589

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 125/464 (26%), Gaps = 57/464 (12%)

Query: 11  LVWLRNDLRITDNKALYAACH------------------------NSDAKVIAVFIATPE 46
           + W+  D RI DN AL  A                          +S+ +V   F   P 
Sbjct: 52  VFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGGGSSSSSSSEPQVAVAFNLVPA 111

Query: 47  QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--- 103
                G  ARQ  F+   L ++Q  L  KGI F   +     D    L     +      
Sbjct: 112 FL---GAGARQFGFMLRGLRELQPKLEAKGIAFFLLK----GDPARTLPDLVTRLGAGLL 164

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
              +   +       +         H V   +     +      +       K++    +
Sbjct: 165 VTDYSPLRLGRQWREQVCSSVPVPVHEVDAHNVVPVWVASDKREVGARTLRPKIHKHLPE 224

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-----ALHI 218
            L        L                                    GE           
Sbjct: 225 FLTDFPEVPQLPPWSHEVKPEPVNWETLLEEVLTRGSAVPEVDWCKPGEDAALQALQGPA 284

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
                     Y  ++ D    +  S LSPYL  G L+P++      +         +S  
Sbjct: 285 GFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAALEAAKHRAKFKAAVESFL 344

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPI 335
              +      + + H    Y S+     +   T +         L   +Q   G T   +
Sbjct: 345 EELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKREFLYTREQLEAGRTHDEL 404

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGW 392
            +A   ++  +G MH  +RM  A  +++         E          LDG   S   G 
Sbjct: 405 WNACQWEMVHVGKMHGYMRMYWAKKILEWTPGPEEAIEIAIYLNDRYELDGRDPSGYVGV 464

Query: 393 QWAAS----TGNDSVPYF---RIFNPTIQGKRFDPQGTFIRHWL 429
            W+ +     G    P F   R  N     ++FD     I+ + 
Sbjct: 465 MWSMAGIHDMGWTERPIFGKIRYMNYNGCKRKFD-----IKAYC 503


>gi|302810940|ref|XP_002987160.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
 gi|300145057|gb|EFJ11736.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
          Length = 987

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF---IYASLLQ 67
           +VW + DLR+ D+  L AA  +    VI +F+  P  +R          F   +  ++  
Sbjct: 81  IVWFKKDLRMDDHPGLVAAASSGYDAVIPLFVFDPMLFRGW-----SQDFVEALVEAVAD 135

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L   G             + + +     Q     +F   + E    +        L
Sbjct: 136 LKLALQAAGSDLAIR----VGSAQDVMYKLVHQVNPRDVFTEDEIEEGPRKIVCDTWSVL 191

Query: 128 QHRVICKSFDDSVLLPPGSI 147
           + +   +             
Sbjct: 192 KAKCQNEPALRQWTASLHEN 211


>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 123/382 (32%), Gaps = 22/382 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L  + +
Sbjct: 25  VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 84

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L Q   I       S+  ++IE + ++  +   + L  +        +  + + KR+  
Sbjct: 85  DLEQTLQIPLL---DSHSGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKRVGK 141

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188
           +V     D   ++P            +        L+ + L+       P      T   
Sbjct: 142 KVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQS 201

Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
              +                +  +       +  +     F  +++  Y   R+ P    
Sbjct: 202 IDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPG 261

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL  G +S ++C     E   +    P++        ++ RE   +   + P 
Sbjct: 262 ALSGLSPYLHFGQISAQRC---ALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPR 318

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               +    W  K   +  S   +            T  P+ +A+  ++   G MH  +R
Sbjct: 319 YNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFMR 378

Query: 355 MITASFLVKDLLVDWRIGEEYF 376
                       V ++    + 
Sbjct: 379 QFYFDKYHLFCFVSFQCCFMFL 400


>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
 gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
          Length = 504

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 120/392 (30%), Gaps = 11/392 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLLQVQ 69
           L W+  D R+ DN AL  A   +  + + +         +    + R   F+   L +VQ
Sbjct: 73  LYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLRHYSFLLKGLEEVQ 132

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K      I F          + + L  +        +  +       ++  + ++K L  
Sbjct: 133 KECKHLNIQFHLLH----GAAGDVLPGFVTGHNFGAVVTDFSPLREPLQWLEAVKKGLPE 188

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188
            +     D   ++P            +        L+ + L    L      +   T   
Sbjct: 189 DIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKHPFSATKTAKA 248

Query: 189 TPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +         + +        G +  L +L  F   ++  +  QR+ P     SQLS
Sbjct: 249 VDWDKTLASLKVDRTVGEPKLAKPGTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLS 308

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS ++   ++++     +                  FY               
Sbjct: 309 PWLRFGQLSAQRVALQVRKNSSPSVPAFIEELVVRRELTDNFCFYNKNYDSVTGAYEWAQ 368

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                   +  +  +  + +++  T   + +AA  Q+ T G MH  LRM  A  +++   
Sbjct: 369 KTLKDHAKDKREYLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLRMYWAKKILEWST 428

Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
                            LDG   +   G  W+
Sbjct: 429 SPEEALSIALYLNDRYELDGQDPNGFVGCMWS 460


>gi|255539721|ref|XP_002510925.1| hydrolase, putative [Ricinus communis]
 gi|223550040|gb|EEF51527.1| hydrolase, putative [Ricinus communis]
          Length = 691

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 64/183 (34%), Gaps = 6/183 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W + DLR+ D+  L  A ++S + ++ +++       +   S      +  +L  ++
Sbjct: 45  AILWFKQDLRVDDHFGLLQASNHSPSSLLPLYVFDHIILSR--YSDEMLEIVLFALQDLR 102

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL ++G          F  +   +     +   T +F   + E +     +++++ L  
Sbjct: 103 NSLKEQGSNLMIR----FGSAEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQNLTK 158

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                  +  ++L      +         +      +Q  V + +    +PA  +     
Sbjct: 159 SQPHLDVNPKIVLWQTPFYDIKNLKDLPASHDHFKKLQLPVTSPILPPTLPATPMELDWG 218

Query: 190 PSN 192
              
Sbjct: 219 SMP 221


>gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium
           chloromethanicum CM4]
 gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium
           chloromethanicum CM4]
          Length = 467

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 26/422 (6%)

Query: 23  NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           N AL  A   ++   + + +               +AR   F+   L     +L ++GI 
Sbjct: 36  NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F   + +  + +I+      L          ++    E+ R+           +    + 
Sbjct: 95  FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                  +      ++ K++  + + +    V      L        G            
Sbjct: 155 VSTKHEYAARTLRPKLRKLWDDYLEPVEPLTVDHPAEGLIQRLKLKDGLDVSDPEKLLAK 214

Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                       F  G   A   L++F +     Y   R+ P     S +SPYL  G +S
Sbjct: 215 LTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311
           P +                   +      ++ RE   + +            +P      
Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331

Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +     +  +   +G T     + AMR++   G+MHN+LRM     +++     
Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420
                          LDG  A++     W     +      +IF     Q +    +FD 
Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451

Query: 421 QG 422
           +G
Sbjct: 452 KG 453


>gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299]
 gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299]
          Length = 469

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 10  HLVWLR-NDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           H+VW+R  DLR+ D+  L+AA     +  ++ +F+  PE+      + ++   ++ ++ +
Sbjct: 72  HIVWIRVGDLRVHDHPGLHAASLLPPSVPIVPLFVFDPEEAANTTPAFQRL--VHEAVRE 129

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L  +G                 ++    +   + L   R+ E + +   +      
Sbjct: 130 LRVALRDRGADLVVR----VGSPATHVERIAKETGASSLSCRRELEWSRMSTHRAALAAA 185

Query: 128 QHRVICKSFDD 138
           +   +    + 
Sbjct: 186 RGAGVESIHEW 196


>gi|319954988|ref|YP_004166255.1| DNA photolyase fad-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319423648|gb|ADV50757.1| DNA photolyase FAD-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 378

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 10/195 (5%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
             + + P    +   I ++        Y   R+      +  LSPYL+ GV+S +Q +  
Sbjct: 4   FPNFLNPEFPTDMDAIQKRIAHVDPRKYASSRNYIDGSVSY-LSPYLARGVISTKQVYQS 62

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L E          S A  ++ EL WR++++ +     +        P        ++  +
Sbjct: 63  LLER-----GFTISNAEKFIQELAWRDYWQQVWIHKENAIDSDLKHPQ----PTVENYEI 113

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            +   +G TG   ID A+  L   G+MHN LRM  AS         W+I  ++    LLD
Sbjct: 114 PKIVAEGTTGIIAIDEAISLLYKTGYMHNHLRMYIASIACNVAKSHWKIPAQWMYYHLLD 173

Query: 383 GDLASNNGGWQWAAS 397
            D ASN   WQW A 
Sbjct: 174 ADWASNALSWQWVAG 188


>gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4]
 gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens DM4]
          Length = 467

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 120/422 (28%), Gaps = 26/422 (6%)

Query: 23  NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           N AL  A   ++   + + +               +AR   F+   L     +L ++GI 
Sbjct: 36  NPALELAIEEANRLELPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F   + +  + +I+      L          ++     + R+           +    + 
Sbjct: 95  FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGAIEREAQCRIVQVEGDVVVPLET 154

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                  +      ++ K++  + + +    V    + L        G            
Sbjct: 155 VSTKHEYAARTLRPKLRKLWDDYLEPVEPRGVDHPAKGLIQRLKLKDGLDVSDPEKLLAK 214

Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                       F  G   A   L +F +     Y   R+ P     S +SPYL  G +S
Sbjct: 215 LTLDTTVGPVKRFRGGHTEAAGHLERFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311
           P +                   +      ++ RE   + +            +P      
Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331

Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +     +  +    G T     + AMR++   G+MHN+LRM     +++     
Sbjct: 332 LAEHADDPRPKLYSEEELAAGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420
                          LDG  A++     W     +      +IF     Q +    +FD 
Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451

Query: 421 QG 422
            G
Sbjct: 452 NG 453


>gi|327540991|gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 837

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 121/402 (30%), Gaps = 17/402 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W+ N LR  +N AL AA   +    + + +      +    S R   FI      V
Sbjct: 29  MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88

Query: 69  QKSLSQKGIVF------QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           Q+ L  +GI +         +  +  D          ++            +  +    +
Sbjct: 89  QRELQARGITYAFHLERHGQRGPHLRDLCRRAAVLVSEEMPVAPIACWVERLRSLVTTPI 148

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
           +       V  +S D                +    +   + L  NL+ A          
Sbjct: 149 MLVDTSCIVPSQSIDAVPTRAFEFRRLIQSDLENRLSRPYEELPANLLPAKFTGSLGFAP 208

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           I L        I +             P G +       +F ++ +  Y  QR+ P    
Sbjct: 209 IDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNHPDDPL 268

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S+LS YL  G++SP +           +  +          E+++R    H+      
Sbjct: 269 GVSRLSGYLHYGMISPFRIAREAAA----MGARKYVDELVVWREMVFRFCLEHVEDLDTM 324

Query: 301 VCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             + K      EK   +        +   +G +   + + A R L   G +H+ LRM   
Sbjct: 325 AVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGELHHNLRMTWG 384

Query: 359 SFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
              +       +   +         +DG    +  G  W+  
Sbjct: 385 KAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFG 426


>gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 468

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 18/218 (8%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S LSPYL   +++  +  N +                 ++ E+ WR +++  +  
Sbjct: 107 NHTHVSTLSPYLRCRLITESEVVNAVLHRHSPAAA------EKFVQEVFWRTYWKGWLEL 160

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P+V             +    + L   W    +G TG    DA  R+L   G++HN  R
Sbjct: 161 RPAVWTQYQMALDQAWNDVQTQAGLRARWENACRGETGIHCFDAWARELVETGYLHNHAR 220

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413
           M  AS  +  L + W +G ++F+  LLDGD ASN  GW+W A        Y  R  N + 
Sbjct: 221 MWFASIWIFTLELPWELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISK 280

Query: 414 QGK-RFDPQ----GTFIRHWL---PELNNVPTQYIHAP 443
             + RF P+    G  I       PE  ++P      P
Sbjct: 281 FTENRFHPKWQLAGEAIPRHAPLPPEPRSLPAGDAFDP 318


>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera]
          Length = 514

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 148/463 (31%), Gaps = 46/463 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L  + +
Sbjct: 37  VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 96

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L Q   I F   Q   F+ S   LDS+ + +   + L  +        +  + + KR+ 
Sbjct: 97  DLEQTLQIPFFLFQAYTFEISASLLDSHSVWEYGASLLVTDFSPLREVQKWKEEICKRVG 156

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGP 187
            +V     D   ++P            +        L+ + L+       P      T  
Sbjct: 157 KKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQ 216

Query: 188 VTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +                +  +       +  +     F  +++  Y   R+ P   
Sbjct: 217 SIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKP 276

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           G  S LSPYL  G +S ++C     E        P++        ++ RE   +   + P
Sbjct: 277 GALSGLSPYLHFGQISAQRC---ALEAKKIQKNCPQAVDVFLEELIVRRELADNFCFYQP 333

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRL 353
                +    W  K   +  S   +            T  P+ +A+  ++   G MH  +
Sbjct: 334 RYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFM 393

Query: 354 RMIT--------ASFLVKDLLVDWRIGEEYFMS-------QLLDGDLASNNGGWQWAAST 398
           R             +  K +L   R  EE             +DG   +   G  W+   
Sbjct: 394 RQEMQDITILEIQMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSI-C 452

Query: 399 GNDSVPY--------FRIFNPTIQGKRFDPQG--TFIRHWLPE 431
           G     +         R  N     ++FD  G   +++  + E
Sbjct: 453 GVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAYVKRLVTE 495


>gi|300957649|ref|ZP_07169841.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
 gi|300315626|gb|EFJ65410.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
          Length = 58

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
          M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ +
Sbjct: 1  MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQLN 53


>gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 302

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  G +S  +  + +                  +NEL WR++++ L        
Sbjct: 71  TRLSPYIRHGAISLAEVRDAVFARTKQRQAS-----EKLINELGWRDYWQRLWEQLGDGI 125

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T          L     +G TG   +D   ++L   GW+HN  RM  A+++V
Sbjct: 126 WSDQEPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQTGWLHNHARMWLAAYVV 185

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
               + W+ G ++F+  LLDGD ASNN  WQW AS+     PYF  FN
Sbjct: 186 HWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASS-FSHKPYF--FN 230


>gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
           domestica GB:D31902 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
           domestica GB:D31902 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 466

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 121/434 (27%), Gaps = 24/434 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W   D RI DN  L  A      S + +       PE         RQ  F+   + Q
Sbjct: 36  LYWCVRDQRIQDNWGLIYAQELALKSKSSLHMCICLVPEFLNAT---IRQFDFMLNGVKQ 92

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++      I F          S++ L  +  +  +  L  +             L  ++
Sbjct: 93  MEEECKNLNIHFHLL----IGISVDVLPKFIKKYNIGVLIVDFYPIKIFNNWVNQLISKI 148

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V      + V     S                K          +             
Sbjct: 149 NIDVYQVDSHNIVPCWIASNKLEYSAKTIRNKINYKLSEYLTEFIPIIKHTYNTYIKINN 208

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                                  G + A  IL  F + ++  Y ++R+ P     S LSP
Sbjct: 209 NWKKAEQSLNIDRNVKPVSWAKSGTKYAFKILDIFIQNRLKDYAKKRNDPNANAISNLSP 268

Query: 248 YLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           ++  G +S ++     N+ K+ +   +      A           +Y             
Sbjct: 269 WIHFGQISTQRIILEINKYKKLYPKSVEVFCEEAIIRKELCDNFCYYNENYDNINGANNW 328

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                   K +  K  + L   +   T   + +A+ +Q+   G MH  LRM  A  +++ 
Sbjct: 329 AIKTLNEHKNDTRKHIYSLYQLENALTHDNLWNASQKQMIIYGKMHGYLRMYWAKKILEW 388

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTIQ 414
                              +DG   +   G  W+    +D            R  +    
Sbjct: 389 TKSPEEALYISIYLNDKYFIDGRDPNGYVGCMWSICGIHDRAWKERPIFGKIRYMSYEGC 448

Query: 415 GKRFDPQGTFIRHW 428
            ++FD    FI+ +
Sbjct: 449 RRKFDVD-LFIKKY 461


>gi|296419444|ref|XP_002839318.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635446|emb|CAZ83509.1| unnamed protein product [Tuber melanosporum]
          Length = 265

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 48/209 (22%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
             L    +  L +      +W++E+  ++F+++++  +P VC  K              S
Sbjct: 99  RTLGANPIKRLGRRSKRIQTWISEIAQKDFHKNVLVNWPFVCTNKTSKLPHSPTPQYSTS 158

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                +  G+TG PIIDAA+RQL    ++ NR R +                        
Sbjct: 159 LAESYFYAGHTGDPIIDAAIRQLQKTKYIRNRARTVCV---------------------- 196

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
                            TG D  PYFR+FNP     +F P    IR W+ +L  V     
Sbjct: 197 ----------------GTGVDPQPYFRLFNPVK-SLQFYPHSEHIRTWVGKLKEV----- 234

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           HAP   LD+         P+VDH+ +   
Sbjct: 235 HAPPKVLDEEGAK----KPLVDHEVSQEE 259


>gi|311747654|ref|ZP_07721439.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126575640|gb|EAZ79950.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 365

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           +QLSPY+S GV+S  Q +  +K      L  P S     + EL WR++++ +        
Sbjct: 35  TQLSPYISRGVISTNQVFEYIK-----SLNFPWSQCEKLVQELAWRDYWQQVWLAKGEAI 89

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F     + +  ++  +  A  Q  TG   +D  +  L   G+MHN +RM  AS   
Sbjct: 90  ----FEDLKNEQKPVQNHQIPSAIIQAKTGIEAVDQGILDLYQTGYMHNHMRMYVASICC 145

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
                 W    ++  S LLDGDLASN+  WQW A 
Sbjct: 146 NIANSHWLNPAKWMYSHLLDGDLASNHLSWQWVAG 180


>gi|88808065|ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
 gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
          Length = 309

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            + +   Y   R+      T  LSP++  GVL+  +    +  +  D       G+   +
Sbjct: 60  QRMEAKRYGRSRNHLKGAVTR-LSPWIRHGVLTLAEIREAVFAQLRDRGQGRDDGS-KLI 117

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           NEL WR+F++ +                T     +    L    ++G TG   +D    +
Sbjct: 118 NELGWRDFWQRMWGDLGDGIHESQEELKTGHDPSSYSRELPDDVREGRTGLACMDGFSEE 177

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AS+    
Sbjct: 178 LVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSH 236

Query: 403 VPYFRIFN 410
            PY  +FN
Sbjct: 237 KPY--VFN 242


>gi|294339500|emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 396

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 79/186 (42%), Gaps = 9/186 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSPYL+ G L  R     L       L          L EL WR 
Sbjct: 30  YARSRNHLQGHVTR-LSPYLTHGFLGLRDVVQHLSMRHGLGL------QDKLLQELGWRA 82

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +     S  +    +      +      L     +G TG P+ID A+R L   G++
Sbjct: 83  FFQQVWRHEGSGILQSQHLGPL--PDRAYAPALPADLCEGRTGVPVIDQAVRTLYATGYL 140

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG+     F   
Sbjct: 141 HNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSSKPYLFNAD 200

Query: 410 NPTIQG 415
           N     
Sbjct: 201 NVAKYA 206


>gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens AM1]
 gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens AM1]
          Length = 467

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 124/422 (29%), Gaps = 26/422 (6%)

Query: 23  NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           N AL  A   ++   + + +               +AR   F+   L     +L ++GI 
Sbjct: 36  NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYSFLLQGLADAAAALEKRGIA 94

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F   + +  + +I+      L          ++    E+ R+           +    + 
Sbjct: 95  FLLRRATPAEIAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
           +      +      ++ K++  + + +    V      L        G            
Sbjct: 155 ASTKHEYAARTLRPKLRKLWDDYLEPVEPRQVDHPAEGLIKRLKLKDGLDASDPEKLLAK 214

Query: 199 ---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                       F  G   A   L++F +     Y   R+ P     S +SPYL  G +S
Sbjct: 215 LALNTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311
           P +                   +      ++ RE   + +            +P      
Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331

Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +     +  +   +G T     + AMR++   G+MHN+LRM     +++     
Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420
                          LDG  A++     W     +      +IF     Q +    +FD 
Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451

Query: 421 QG 422
           +G
Sbjct: 452 KG 453


>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
          Length = 446

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 125/407 (30%), Gaps = 21/407 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W++   R  DN AL  A   ++A  +   I           + R   F+   +  + + 
Sbjct: 2   YWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAEM 61

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
             ++ I F   +          L  +C + +   +  +           ++  K+L+  +
Sbjct: 62  AEERDIGFVLRRF-----PEHSLIKFCDEVKAALVIGDENPMRELREWREIAAKKLRVPL 116

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                D  V         +A ++ +         +    +     +   A R    +   
Sbjct: 117 WTVDADVIVPSKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGLQQLDWR 176

Query: 192 NIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                   +           F  G + AL +L +F K  +  Y E+ +     GT++LSP
Sbjct: 177 GTEDITEGWEIDRSVKPVDSFHGGTREALRLLDEFVKHGLTRYPERHNQADENGTARLSP 236

Query: 248 YLSIGVLSPRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           YL  G + P      +++     E  D  +            ++        +    +  
Sbjct: 237 YLHFGHIGPHTVALAVEKSKVPREAKDDFLDQVITWRELAINMVHFNPLYDTLECGENWA 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                    +          L+A     T   + +AA  Q+   GWMHN +RM  A  ++
Sbjct: 297 HKTLGEHAKDPRPIQYTPKQLEA---AETYDDLWNAAQLQMVHAGWMHNYMRMYWAKKIL 353

Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           +                    LDG   +   G  W A  G    P+F
Sbjct: 354 EWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAW-AIVGKFDRPWF 399


>gi|87123060|ref|ZP_01078911.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
 gi|86168780|gb|EAQ70036.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
          Length = 313

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 5/181 (2%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSP++  GVLS  +         +    + +      +NEL WR+
Sbjct: 87  YGRSRNHLDGAVTR-LSPWIRHGVLSLAEV-RDAVFLQLQKRGQSRDDGAKLINELGWRD 144

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +                T     +    L +  + G TG   IDA   +L   GW+
Sbjct: 145 FWQRMWQALGDRIHDSQEELKTGHDPASYRVELPEDIRDGRTGLACIDAFRAELVHSGWL 204

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A+++V    V W+ G ++F+  LLDGD ASN+  WQW AS+     PYF  F
Sbjct: 205 HNHARMWLAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSHKPYF--F 261

Query: 410 N 410
           N
Sbjct: 262 N 262


>gi|307297559|ref|ZP_07577365.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916819|gb|EFN47201.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 449

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 130/435 (29%), Gaps = 33/435 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R  +N AL  A       D  +  +F+           + R   F++  L  
Sbjct: 21  LYWMQASQRTEENHALELAKQEAKELDVPLAVLFVLN---ANYPSGNLRSFSFMFDGLRD 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+  L ++GI F   +    D   +      L         ++      +          
Sbjct: 78  VKSELEEQGIRFVIFKGDPVDIVPKVSKRCALVVTDVGYLRHQIDWRKRIAEKLECPFLS 137

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +      +      S      ++ K +  F      N  +A             G 
Sbjct: 138 VESNVVVPVRTASCKEEYSAATFRKKVMKHFAEFV-----NDFEAVELRSRASLAEFEGA 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               ++         ++   F  G++ A   L  F  + +  + E+R+ P     S++SP
Sbjct: 193 TGIEDVDLSDLDQSVSVVSDFHGGQKEAKRRLEVFLSKNLDRFEEERNDPNSGCLSEMSP 252

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +SP     R+ +                   ++ RE   + + +       +  
Sbjct: 253 FLHFGHISPSYIARRVIDSCSKGKNAYIEEL------VVRRELGVNFVFYNSKYDSFEAL 306

Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W +K                   + G T  P  +AA ++++  G MH  +RM     L
Sbjct: 307 PQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWNAAQKEMSLTGKMHGYMRMYWGKKL 366

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS------TGNDSVPYFRIFNPT 412
           ++                    LDG   +   G  W         +  +     R  N  
Sbjct: 367 LEWSSDPESAICSAIYLNDKYELDGRDPNGYAGILWCFGKHDRAWSEREIYGKVRYMNSN 426

Query: 413 IQGKRFDPQGTFIRH 427
              ++FD   ++++ 
Sbjct: 427 GLKRKFDID-SYVKR 440


>gi|311029788|ref|ZP_07707878.1| deoxyribodipyrimidine photolyase [Bacillus sp. m3-13]
          Length = 221

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M++ ++W R D R+ DN ALY A     + +  ++ V+   P        +     F +A
Sbjct: 1   MTLSIMWFRRDFRLQDNAALYHAVKETQHRNEPLLLVYHLDPGFTTNDTPN---HRFFFA 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L +  K   ++GI     + +  +   + L+ +     VT L+YN+       +RDK +
Sbjct: 58  ALDRFIKRCEKQGIYIHLVEGTWQEAFNQILEHF---PEVTSLYYNQDEVGAGQKRDKEV 114

Query: 124 EKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +K    R I  S      +     +      +YKV+TP+ K  +    +   
Sbjct: 115 DKFFIKRGIRVSSYIDYTIHGANEVKKPDNSIYKVFTPYFKKWMAQPKRDPY 166


>gi|149280167|ref|ZP_01886291.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39]
 gi|149229181|gb|EDM34576.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39]
          Length = 65

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
          MK      + + WLR DLR+ D+ ALY A       V+ +FI       +  +   +  F
Sbjct: 1  MKKE----ISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTF 55

Query: 61 IYASLLQVQK 70
          IY ++ ++  
Sbjct: 56 IYNTIKELNA 65


>gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
          Length = 512

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 126/404 (31%), Gaps = 28/404 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A     ++   ++ VF   P+         R   F+   L Q
Sbjct: 32  VYWMSRDQRAKDNWALLYARSLARSARVPLVVVFSLVPKFLDAT---IRHYGFMLRGLHQ 88

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K L +K + F   Q      +   + ++  Q     +  +       +R  K + + L
Sbjct: 89  TAKHLHEKLVPFHLLQ----GSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQAL 144

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +     D   ++P            +   P     +   +Q            L  
Sbjct: 145 EAQNVPLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGD 204

Query: 187 PVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              P        +    +D           G +  +     F +++   + E R+ P   
Sbjct: 205 MELPPVFDLEAQFDMLEVDTSVKEVDWIEPGYEQGMAAAEAFGRDRAKKFDELRNNPNED 264

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPY   G +S       LK ++     K           ++ RE   +   +   
Sbjct: 265 VCSNLSPYFHFGQISAAAVVLLLKSKYSKKAAKGV--QTFIEEAVVRRELSDNFCFYNRR 322

Query: 301 V------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                   +       T + +  +  +  +  +QG T   + +AA  Q+   G MH  LR
Sbjct: 323 YDSIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHDDLWNAAQLQMVERGKMHGFLR 382

Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           M  A  +++         +          LDG   +   G  W+
Sbjct: 383 MYWAKKILEWTATPEDALQTALFLNDRYELDGRDPNGYVGCMWS 426


>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2507184|sp|P12769|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
 gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 445

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 131/402 (32%), Gaps = 30/402 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  + W++  +R   N AL  A   +++    +I VF  T +       ++R   F+   
Sbjct: 20  SYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDDF---PNANSRHYRFLIEG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  V+ +L ++GI     +    D     L  Y                  E   +    
Sbjct: 77  LRDVRSNLRERGIQLVVER----DSPPSVLLKYADDAAAAVTDRGYLDIQKEWVDEAAGA 132

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +    +  +    V          A          ++ L + +V   +R+L + ++ L
Sbjct: 133 LHIPLTQVESNVIVPVETASDKEEYSAGTF---KPKIKRHLKRFMVPLRMRTLKMDSLDL 189

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  +  R F  P      +F  G   AL I  +F +EK+  +   R+ P     S 
Sbjct: 190 EPGPEFEDAVRDFRAPEDLEPSVFRGGTSTALSIFSEFLREKLECFERYRNDPVKNCLSN 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +SPYL  G +SP     R  E                   ++ RE   + + +  S    
Sbjct: 250 MSPYLHFGQISPLYLALRASEAGE--------CPEFLEELIVRRELSMNFVHYSDSYSSI 301

Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W ++   +  +   +        +   T  P  +AA +++   G MH  +RM   
Sbjct: 302 SCLPEWAQRTLMDHVADPREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRMYWG 361

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +++      R  +          +DG   +   G  W   
Sbjct: 362 KKILEWTDHPARAYDIALYLNDRYEIDGRDPNGFAGVAWCFG 403


>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 453

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 134/437 (30%), Gaps = 32/437 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N AL  A   ++     ++ +F+ + +     G   R   F+   + Q
Sbjct: 23  LYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRDYL---GAGRRHYRFLLEGIEQ 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L+ +GI F         D    +  +      V       + + +  +        
Sbjct: 80  LEVDLADRGIGFLL----KIGDPPGIVAEFAADAALVVFDTGYTRLQRSWRKAAAAGSFC 135

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                +       V    G     A  + +  TP     +Q L +   +           
Sbjct: 136 APVMEVESDLVVPVRTASGKEEYSAATIRRKITPLLFRFMQPLKRQSAKIDSTALAGRAD 195

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV---YYYVEQRDIPAIQGTS 243
            +          +    ++P+  I   +     R            + E+R+ P+ +G S
Sbjct: 196 GLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRLDAFITSGTLERFHEERNDPSKEGLS 255

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPYL  G +S  +    L+                 +   +   F  +   +     +
Sbjct: 256 CMSPYLHYGQISALEIA--LRASEHPGPGCEAFLEELIIRRELAFNFVFYNRFYDSFEAL 313

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +      E  E +K   L    +  +  T  P  +AA R+L   G MH  +RM     +
Sbjct: 314 PRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELTHKGKMHGYMRMYWGKKI 373

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFN 410
           ++         E          LDG   +   G  W    G    P+         R  N
Sbjct: 374 LEWSASPREAFERALRLNDRYSLDGRDPNGYTGVAW--CFGKHDRPWASRPVFGKIRYMN 431

Query: 411 PTIQGKRFDPQGTFIRH 427
                ++FD   ++++ 
Sbjct: 432 DRGLERKFD-IASYVKQ 447


>gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 506

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 26/388 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN A+  A          ++  F+    Q  +   + R + F+   L +
Sbjct: 32  VYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVTEPKTTLRYAGFMLKGLEE 91

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +  L +K I F   Q +   +  + + ++  +     +  +     +  RR + + + L
Sbjct: 92  TEGDLRKKKIPFHLLQAA---EPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVAEEL 148

Query: 128 QHR---VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                       D   ++P  +  +    M +   P   A    L      S      +L
Sbjct: 149 NKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHARPDFLGAIPELSPNPQGTKL 208

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                        D      +  +   G + A   L+ F + ++  + +  + P     S
Sbjct: 209 PAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNEDVCS 268

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPY ++G +S                  P          ++ RE   +   +  +   
Sbjct: 269 HMSPYFNLGQMSA----QAAVMRVKASRRHPDGVKAFVEQGVVRRELSDNFCFYNDNYDN 324

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK-------QGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 W  +      +   + W        +  T   + +AA  QL   G MHN LRM 
Sbjct: 325 LSGAAGWARESLEAHANDQRE-WTYSVQELEEAKTHEDLWNAAQLQLVRDGKMHNFLRMY 383

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            A    K +L       +     L   D
Sbjct: 384 WA----KKILEWSPSPHDALERCLFFND 407


>gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
 gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
          Length = 228

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 5/181 (2%)

Query: 11  LVWLRN-DLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  DLRI+DN+AL  A   +   +  ++ +F+ +P+ +  H   AR+  F   +L 
Sbjct: 38  VYWMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQDYIAHDRGARRIDFTLRNLF 97

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            V+ SL++  I          ++    + S+         + N +YE++E+RRD  +   
Sbjct: 98  CVKDSLAKLPIPLHTFTEQTGENYRRPVISFLQDYSCNSFYANIEYEVDELRRDLKVCAL 157

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + + +      +  ++ PG +   A + Y VY+PF +  I  L +     L        
Sbjct: 158 AKSKGMKAMFVHNKCIIEPGVVTTKANKAYAVYSPFERTWISKLNENQDSYLQEYLAPEP 217

Query: 186 G 186
            
Sbjct: 218 N 218


>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 124/396 (31%), Gaps = 21/396 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R  +N AL  A + ++ +   V+ VF  T +       + R   F+   L +
Sbjct: 22  LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTND---SPDANLRHYTFMLEGLNE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +KSL ++GI   +       + ++            + +   Q    +   +K     +
Sbjct: 79  TRKSLEKRGIRMIFRIGHPVKEVLDIGRK-ASMIVCDRGYLRHQRAWRKAIAEKSGCPVV 137

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q         + V                         I+++   +              
Sbjct: 138 QVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIALKSTELER 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +         D   Q +  +F  G   A      F  +    Y   R+ P     S +SP
Sbjct: 198 IKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNEPKYLAVSCMSP 257

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP     ++K    +      +        ++ RE   + + F P        
Sbjct: 258 YLHFGQISPLYLALKIKACKNEAQEAAAAYLEEL---IVRRELAANFVYFNPYYDSLGCL 314

Query: 308 IPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W        + +     +         T     +AAM+++   G+MHN +RM     +
Sbjct: 315 PAWPTKTLAEHEKDVRDPVYTKSQLIACRTHDEYWNAAMKEMIVTGFMHNYMRMYWGKKI 374

Query: 362 VKDLLVDWRIGEEYF---MSQLLDG-DLASNNG-GW 392
           ++      R  E       +  LDG D  S  G GW
Sbjct: 375 LEWSPTPLRAYETMIDLNNAYFLDGRDPNSYAGVGW 410


>gi|22298095|ref|NP_681342.1| putative deoxyribodipyrimidine [Thermosynechococcus elongatus BP-1]
 gi|22294273|dbj|BAC08104.1| tll0552 [Thermosynechococcus elongatus BP-1]
          Length = 276

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 5/144 (3%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L WR++++ L A +            T     +  + L  A     TG   +DA    L
Sbjct: 113 QLAWRDYWQRLYAHWGDRLWQDIEPYKTGWSAVDYATDLPAALVAAETGLACMDAFSSDL 172

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G++HN  R+  A+++V    V W+ G  +F+  LLDGD ASNN  WQW AST     
Sbjct: 173 QRTGYLHNHARLWLAAYVVHWCRVRWQAGAAWFLQHLLDGDPASNNLSWQWVAST-FSHK 231

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRH 427
           PYF  FN   Q       G + R 
Sbjct: 232 PYF--FN--RQNLERYSDGKYCRQ 251


>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
          Length = 264

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           +   +     LSP L  G LS R        L  E     +  +S +     +LIWRE++
Sbjct: 100 NPDLLGRPISLSPALRFGCLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYF 159

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +    P+           +    N +   LQ W +G TGFP +DAAMRQL T GW+H+
Sbjct: 160 YTMSVNNPNYGQMSGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHH 219

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
             R   A FL +  L + W  G  +F+  LLD D +   G W W 
Sbjct: 220 VARNTVAFFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWV 264


>gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
           JCM 2831]
          Length = 462

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 138/422 (32%), Gaps = 23/422 (5%)

Query: 23  NKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79
           N AL  A   ++     V+A F            +AR   F+   L   +  L ++G+ F
Sbjct: 36  NPALELAIEEANRLDLPVVACFGLLDGASGFPEANARHYAFLLQGLADAKAGLEKRGVGF 95

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
              +CS  + +I   +   L          ++    E+              +    + +
Sbjct: 96  VMRKCSPAEIAIALAEDAALLVLDRGYLAIQKGWYREIAAAVKTRIVQVEGDVVVPVETA 155

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
                 +      ++ +++ PF   L    V+     L + +                D 
Sbjct: 156 SPKHEYAARTLRPKLNRLWDPFLAPLKPRRVKHSADRLTLKSAIDVSDPEAVLAGMTLDR 215

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +      GE  A   L+ F K+    Y   R++P     S +SPYL  G +SP + 
Sbjct: 216 EVGPVRRFT-GGETQARKRLKAFLKDGFSGYGAGRNMPEAAAASHMSPYLHFGQISPVEI 274

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWN 317
              ++E  V       +        ++ RE   + + +          +P    + +  +
Sbjct: 275 ALAVREAKVGDSDDRGAYLEEL---IVRRELAMNHVYYTEGYDDYDRAVPDWARKTLAEH 331

Query: 318 KDSHLLQAWKQ-----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                  A+ +     G T     +AAMR++   G+MHN+LRM     +++         
Sbjct: 332 ARDERPHAYSEAQLAAGETHDRYWNAAMREMRETGYMHNQLRMYWGKKILEWSPSPREGF 391

Query: 373 EEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QG----KRFDPQGTF 424
                      LDG   ++     W     +      +IF     Q     K+FD +  +
Sbjct: 392 ARTLRLNNRYFLDGRDPNSFTNVAWVYGLHDRPWQKRKIFGTVRYQSENSLKKFDAKA-Y 450

Query: 425 IR 426
           +R
Sbjct: 451 VR 452


>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 489

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 125/394 (31%), Gaps = 12/394 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++     + +A          +AR   F+   L  V +
Sbjct: 58  LYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLMDDYPEANARHYAFLLEGLQDVAE 117

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+++ I F   +    + ++       L         +++     V R+          
Sbjct: 118 ALAERRIAFVVQRGRPDEVALRLAQDAALLVCDRGYLRHQRLWRERVAREARCRVVQVES 177

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    + +      +      ++ +    + + + +  ++A  R L V  + LT P   
Sbjct: 178 DVVVPVEVASDKKEHAARTLRPKLTRHLETYLRDVEEVALRAPSRELGVEGLDLTDPGA- 236

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             +         A    F  G +    +LR F +E+   Y   R+ P     S +S YL 
Sbjct: 237 -LLASLKLDTSVAPVRRFRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSHMSKYLH 295

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS----VCMGKP 306
            G +SP      ++        +          EL     +                   
Sbjct: 296 FGQISPVFVALEVQRAGAGKNAEVYLEELIVRRELPMNFVFYEPHYDRYDALPAWARKTL 355

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                +  E       L+A     T  P  +AAM+++   G+MHN +RM     +++   
Sbjct: 356 DEHRGDAREHLYTREQLEA---AETHDPYWNAAMKEMLHTGYMHNYMRMYWGKKILEWSP 412

Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
                 E          LDG  A++     W   
Sbjct: 413 SPEEAFETALHLNNRYFLDGRDANSYANVAWVFG 446


>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
 gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
          Length = 451

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 115/356 (32%), Gaps = 17/356 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  +N AL  A   S   +  +I  F   P        + R   F+   L+Q
Sbjct: 21  VYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSY---PEATLRHYDFMLKGLMQ 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++ L    I F         +    +  +    R   +  +  +   ++      +   
Sbjct: 78  VEQQLEALNIPFLVLS----GNPEREIPRFTASCRAGAVVTD--FSPLKISETWKNKVLE 131

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTG 186
              +     D   ++P  +  N      +   P    L++  L          P  +   
Sbjct: 132 HIPIPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTGFPELKGQSPERKSAV 191

Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P    N         +A+ P      G   A   L+KF   ++  Y + R+ P     S 
Sbjct: 192 PPVEWNKLYETLRINRAVAPVTWIDPGGDAATKTLKKFIDHRLASYPKLRNDPNAHAVSD 251

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +S +     ++        K        +   +   +  +   +     + 
Sbjct: 252 LSPYLHFGQISAQHVAREIQASDAPRSAKDVFLEELVIRRELADNYCLYNKHYDSLKGIH 311

Query: 305 KPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  E+   +    L  A   ++  T  P+ +AA ++L   G MH  LRM  A
Sbjct: 312 PWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGKMHGYLRMYWA 367


>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
 gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
           273]
          Length = 495

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 146/481 (30%), Gaps = 76/481 (15%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N+AL+ A        A +I  F  +P          RQ  F+   L++
Sbjct: 21  IYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATF---RQYDFMLRGLME 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V++ L +  I F   +     D  E +  +        +  +        R        L
Sbjct: 78  VERRLRELEIGFVLLE----GDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAAAAL 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I     + V     S         + + P    L+   + A      VPA     P
Sbjct: 134 PVLFIEVDAHNIVPCLMASPK--QEYSARTFRPKVNRLLGEFLIALPPVERVPASEPWAP 191

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +         A     P  GE  A+  L  F +E++ +Y E+R+ P    TS LS
Sbjct: 192 TDWERVRARLPVERPAGTVRHPQPGEAAAIRHLETFIRERLAWYGERRNDPNADATSGLS 251

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------------------------- 279
           PYL  G +        ++     +      G                             
Sbjct: 252 PYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREASGVVNSTSPEGW 311

Query: 280 -----------------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
                                 ++ RE   +  A+            W +       + L
Sbjct: 312 EATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIWAQDSLARHAADL 371

Query: 323 LQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
            +A      +++  T  P+ +AA ++L   G +H  +RM  A  +++         E   
Sbjct: 372 REAIYTPEEFEKAVTHDPLWNAAQQELLRTGSIHGYMRMYWAKKILEWSPSPREAFETAV 431

Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTIQGKRFDPQGTFI 425
                  LDG   +   G  W+   G    P+F        R  N     ++FD +  +I
Sbjct: 432 WLNDRYALDGRDPNGYAGVAWSIG-GLHDRPWFERPVYGKIRYMNAAGCRRKFDVE-RYI 489

Query: 426 R 426
           R
Sbjct: 490 R 490


>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 486

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 125/417 (29%), Gaps = 34/417 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  L W++   R   N AL  A    ++    V AVF  TP          R   F+   
Sbjct: 27  SCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSY---PEAQRRHYRFLIEG 83

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+  Q   +Q G+           D    +     + R   +  +             + 
Sbjct: 84  LVDTQADAAQLGVPLVVR----LGDPPAVVLKAVEESRPAVVVGDENPVRIGQCWRAKVA 139

Query: 125 KRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  R     F      +   S L    +        +   + +     L  +      
Sbjct: 140 ESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRPKIHRMLHEWLKPLPVIKAKTPW 199

Query: 184 LTGPVTPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVE 232
            T        P+      + +            P +P G + A   L++F  +++  Y +
Sbjct: 200 PTDESGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQRFVAQRLARYGK 259

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            R+ P    TS+LS +L  G +SP        +  EE         S        ++ RE
Sbjct: 260 DRNEPIPYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASVESYLEEMIVRRE 319

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQL 343
              + +A  P          W         +             +  T  P+ +AA +++
Sbjct: 320 LAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAETHDPLWNAAQKEM 379

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAAS 397
              G MHN LRM  A  +++             +      +DG   +   G  WA  
Sbjct: 380 TLTGRMHNYLRMYWAKKILEWSPDPETAFAVALDLNDRYEMDGRDPNGYTGVAWAIG 436


>gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina]
          Length = 529

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/454 (14%), Positives = 122/454 (26%), Gaps = 70/454 (15%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNS----------------------------- 33
             +     + W+  D+R++DN AL   C  +                             
Sbjct: 45  NNSPTPPVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALA 104

Query: 34  DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
              ++  F   P+     G  AR   F+   L +++  L Q  I F   +        + 
Sbjct: 105 QPPLVVAFNLVPQFL---GAGARSFCFMLKGLRELETKLRQFNIPFYLLR----GQPEDT 157

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           +       R   +  +        +  + +  +LQ + +     D+  + P      + +
Sbjct: 158 IPQLVDALRAGLVVSDYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVP--AKIASNK 215

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
                   R  + + L +  +         +         P         +  +   G  
Sbjct: 216 REYAARTIRPKIEKLLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAA 275

Query: 214 NALHILRKF-----------------CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
                                           Y+V++ D     G S LSPYL  G LS 
Sbjct: 276 VPEVDWITPGEAAARAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSA 335

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           ++      +                   ++ RE   +     P      P   +   ++ 
Sbjct: 336 QRAALEASKLRSRHREAVDRYLEEL---IVRRELADNFCEHCPDYDKLVPGTAYDWALKS 392

Query: 317 NKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            +                + G+TG  + +A   +L   G MH  +RM  A  +++     
Sbjct: 393 LEKHKRDPRPITYTRQQLESGHTGDDLWNAGQMELVRQGKMHGYIRMYWAKKILEWSGTP 452

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQW-AAST 398
               E          LDG   S   G  W  A  
Sbjct: 453 EEAVENAIYLNDKWSLDGRDPSGYTGVMWSVAGV 486


>gi|148238603|ref|YP_001223990.1| FAD binding domain-containing protein [Synechococcus sp. WH 7803]
 gi|147847142|emb|CAK22693.1| FAD binding domain of DNA photolyase [Synechococcus sp. WH 7803]
          Length = 340

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 5/188 (2%)

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +     Y   R+      T  LSP++  GVL+  +    +  +  D       G    +
Sbjct: 91  QRMDAKRYGRSRNHLKGAVTR-LSPWIRHGVLTLAEIREVVFAQLRDRGQGRDDGG-KLI 148

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           NEL WR+F++ + +              T     +    L    ++G TG   +D     
Sbjct: 149 NELGWRDFWQRMWSDLGDSIHESQEELKTGHDPASYSRELPDDVREGRTGLACMDGFRDD 208

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AS+    
Sbjct: 209 LVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSH 267

Query: 403 VPYFRIFN 410
            PYF  FN
Sbjct: 268 KPYF--FN 273


>gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
 gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
          Length = 404

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 18/218 (8%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S LSPYL   +++  +  N + +               ++ E+ WR +++  +  
Sbjct: 43  NHTHVSGLSPYLRCRLITESEVVNAVLQRHSIAAA------EKFMQEVFWRTYWKGWLEL 96

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P+V             +    + L   W    +G TG    DA   +L   G++HN  R
Sbjct: 97  RPAVWTQYQVALDQAWNDVQTQAGLRARWENACRGETGIDCFDAWAHELVETGYLHNHAR 156

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413
           M  AS  +  L + W +G ++F+  LLDGD ASN  GW+W A        Y  R  N + 
Sbjct: 157 MWFASIWIFTLELPWELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARSSNISK 216

Query: 414 QGK-RFDPQ----GTFIRHWL---PELNNVPTQYIHAP 443
             + RF P+    G  I       PE  ++P    + P
Sbjct: 217 FTENRFHPKWQLAGEAIPRSAPLPPEPRSLPPGTAYDP 254


>gi|296120560|ref|YP_003628338.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
 gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
          Length = 843

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 113/416 (27%), Gaps = 27/416 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ + LR  +N AL  A H +      + +           + R+  FI      V  
Sbjct: 48  LYWMHHSLRGHENPALDVAIHLAHWLEKPLLVYQGLSEDHPYANDRRHTFILQGARDVHA 107

Query: 71  SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L+  +   V    +  +    ++ L ++        +               +    + 
Sbjct: 108 ELAEQKISSVLHVARAEDRGPHLKTLAAHAAVLVTDDVPTAPTIHWRNRLAASIKTPIVC 167

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRL 184
               C      V         +      +Y          L        L   P  ++ L
Sbjct: 168 VNGACIVPPQLVKRAFDRAFAYREATAWLYKTRNTRPWPVLRYAGKPFPLDQRPFQSVDL 227

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   +                 G Q        F K+ +  Y +QR+     G S+
Sbjct: 228 QQTSIADLLAISQIDHSVGPVQHTVGGSQAGYTRWENFKKQGLRRYADQRNDALKDGVSR 287

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S YL  G++SP        E       K           LIWRE       +       
Sbjct: 288 MSAYLHYGMVSPFTLVRDCFEVGGASAEK------YLDELLIWRELAWCFCHYRTDHEAL 341

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W  +     ++    A           T  P+ +AA   L   G +HN +RM   
Sbjct: 342 SALPTWARQALKAGEADTRPALYDEETLARAQTHDPLWNAAQMSLLRQGELHNNVRMTWG 401

Query: 359 S---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
                  +      R+  +      LDG   ++ GG  W          + R F P
Sbjct: 402 KAIPLWTRTTEEALRLLFDLNHRYALDGCDPASYGGLLWCLG------QFDRPFTP 451


>gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max]
          Length = 500

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 70/456 (15%), Positives = 134/456 (29%), Gaps = 40/456 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+TDN AL  A   ++   + V +         G  +R   F+   L Q+  
Sbjct: 32  VYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCH 91

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +           Q     ++ E +  +  +   + L  +        R  + + KR+  
Sbjct: 92  RMQHYSSNPLFLFQ----GEADETVPKFLRECGASLLVTDFSPLREVRRCKEEICKRVSD 147

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGPV 188
            V     D   ++P     +      +         + + LV      +  PA +     
Sbjct: 148 SVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEVEPPAGKWVATE 207

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNAL-----------HILRKFCKEKVYYYVEQRDIP 237
             S                 P  +                      K    Y +++ +  
Sbjct: 208 NHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRLKGYSLDRNNPC 267

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S LSPYL  G +S ++C     E        P++        ++ RE   +   +
Sbjct: 268 HPNALSGLSPYLHFGQISAQRC---ALEARKRRNSHPQAIDAFLEELIVRRELADNYCFY 324

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHN 351
            P     K    W +       +   +         +  T  P+ +A+  ++   G MH 
Sbjct: 325 QPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNASQLEMVHYGKMHG 384

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--- 405
            +RM  A  +++         E          LDG   +   G  W+   G     +   
Sbjct: 385 FMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSI-CGVHDQGWKER 443

Query: 406 -----FRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434
                 R  N     ++FD      ++   + EL  
Sbjct: 444 PIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKK 479


>gi|209965665|ref|YP_002298580.1| hypothetical protein RC1_2382 [Rhodospirillum centenum SW]
 gi|209959131|gb|ACI99767.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 484

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 72/229 (31%), Gaps = 13/229 (5%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
             Q   P    G       L +  +         R        S L PY+   +++  + 
Sbjct: 62  MTQPFPPRRDAGLARLHAFLPRAGQRYAAERNHDRGPADRGNVSGLGPYVRHRLVTEAEV 121

Query: 260 WNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
              + +       +  I+ +     W   L  R           +               
Sbjct: 122 IRHVLDVHSFGAAEKFIQEQFWRTYWKGWLELRPQVWRDWLAGVAEARR-------RLDR 174

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                        G TG    DA   +L   G++HN  RM  AS  +  L + W +G E+
Sbjct: 175 DPGLHDCYTDAVAGRTGIDGFDAWAAELRETGYLHNHARMWFASIWIFTLRLPWELGAEF 234

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422
           F+  LLDGD ASN   W+W          Y  R  N     + RFDP G
Sbjct: 235 FLRHLLDGDPASNTLSWRWVGGLQTVGKTYLARRDNIRTYTEGRFDPVG 283


>gi|254431208|ref|ZP_05044911.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197625661|gb|EDY38220.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 440

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           NEL WR++++ L                T        + L     +  TG   IDA   +
Sbjct: 106 NELGWRDYWQRLWRLLGDGIWHDLEPLRTGHPAEAYAAELPPDITEARTGLACIDAFAAE 165

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L T GW+HN  RM  AS++V    V W+ G  +F+  LLDGD ASNN  WQW AS+   S
Sbjct: 166 LRTSGWLHNHARMWLASYVVHWRRVRWQAGARWFLQHLLDGDPASNNLSWQWVASS-FSS 224

Query: 403 VPYF 406
            PY 
Sbjct: 225 KPYI 228


>gi|188586748|ref|YP_001918293.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 456

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 126/402 (31%), Gaps = 21/402 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + + +      +    S+R   F+   L  V +
Sbjct: 24  LYWMQKAQRTHYNHALEYAIEQANKLNLPLIVYFGLYEQFPYASSRHFQFMLQGLQDVAE 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +L+++ I     +      +IE         + +   K   + +  ++      + +   
Sbjct: 84  NLAKRNIKMIIKRTFPPYGAIELAKDASMIVVDKGYLKFEKDWKEILSHQLSCPIHQIET 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTG 186
              +   +          ++    L+M  ++     +   N    ++ +      I +  
Sbjct: 144 DAVIPVNTASSKEEYAAYTLRKKLLKMLDIFLTPLISRNPNFNSFEITNLEQYNDIDIYT 203

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +     +           GE              + +  Y+++++ P++Q TS+
Sbjct: 204 KSASEILEELDIHREVQPVTDIKGGENQALEQLSGFLNQGKGLELYIQKKNDPSVQATSK 263

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +SP      + +   D               ++ RE   +L+    +    
Sbjct: 264 LSPYLHFGQISPLFIALEVLKFTQD------YNHEFLEQLIVRRELSLNLIEKNINYLTL 317

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            P   W+ K      +     +          T     +AA ++L + G +HN +RM   
Sbjct: 318 SPLPQWSIKTLNEHRNDPRNNFYTLEEIEAANTHDKYFNAAQKELMSRGTIHNYIRMYWG 377

Query: 359 SFLVKDLLVDWRI---GEEYFMSQLLDGDLASNNGGWQWAAS 397
             +++                    LDG   +      W   
Sbjct: 378 KKIIEWSQTPEEAHNTLCHLNDKYALDGRDPNGYANILWCFG 419


>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa]
 gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa]
          Length = 503

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 125/386 (32%), Gaps = 26/386 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   ++   + V +A     +  G  ARQ  F+   L Q+Q 
Sbjct: 36  VYWMFRDQRLQDNWALIHAVDQANRSNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQS 95

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + +   I F         ++ E + ++      + L  +             + KR+  
Sbjct: 96  HIEETLQIPFFLF----LGEAEETIPAFLKDCGASLLVTDFSPLRQFRTCQDEICKRVSD 151

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLRSLPVP 180
            V     D   ++P            +        L         +  L +    +    
Sbjct: 152 SVTIHEVDAHNVVPIWVASEKLEYSARTLRGKINKLLPEYLIDFPMLQLPKNKWVAATKQ 211

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +I     +             +  +P      +  +     F  +++  Y   R+ P   
Sbjct: 212 SIDWNDLIDNVLRKGAEVPEIKWCEPGEDAAMEVLMGSKDGFLTQRLKNYSTDRNNPLKP 271

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S LSPYL  G +S ++C     E      + P+S        ++ RE   +   + P
Sbjct: 272 KGLSGLSPYLHFGQISAQRC---ALEARKVRNLSPQSADAFLEELIVRRELADNFCFYQP 328

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH--N 351
           +         W  K   +  S   +         +  T  P+ +A+  ++   G MH   
Sbjct: 329 NYDSIHGAWEWARKTLADHASDKREHIYSKEQLEKAQTADPLWNASQLEMVCHGKMHGFM 388

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM 377
           R + + + +  K +L   R  EE   
Sbjct: 389 RQKTLCSMYWAKKILEWTRGPEEALA 414


>gi|78211770|ref|YP_380549.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9605]
 gi|78196229|gb|ABB33994.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           CC9605]
          Length = 303

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVL+  +  + + E   +     K      +NEL WR+
Sbjct: 60  YAKSRNHLRGAVTG-LSPYIRHGVLTLAEVRDSVFERIRNRDEGGK-----LINELGWRD 113

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +                T          L    + G TG   +D    QL + GW+
Sbjct: 114 FWQRMWLDLGDGIHDDQEPFKTGHDAGAYAQELPADVRAGTTGLACMDGFRDQLVSTGWL 173

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST     PYF  F
Sbjct: 174 HNHARMWMAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVAST-FSHKPYF--F 230

Query: 410 N 410
           N
Sbjct: 231 N 231


>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
 gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
          Length = 455

 Score = 80.3 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 127/430 (29%), Gaps = 20/430 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++A  + + +           +AR   F+   L +V++
Sbjct: 23  LYWMQQSQRAGGNPALEYAVEQANALKLPLLV-CFGLAAFPEANARHYDFMLRGLAEVER 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+ +GI F   +    +   E      L          ++     +             
Sbjct: 82  ALAARGIGFVIRKRPPHELVRELAADAALVVADRGYLRIQRAWRERLAEGLARRLVQVEG 141

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +    + +      +      ++++++  +   L +  V      L V        V  
Sbjct: 142 DVVVPVEAASNKHEYAARTIRPKLHRLWDDYLHPLAERPVNHPALGLRVAGDVDLSKVDA 201

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                  D     +       E  A   L  F    +  Y   R  P     S LSPYL 
Sbjct: 202 VLAGLKIDRSVPPVRRFAAG-EGAARAALAAFLDRGLARYEADRSRPEAGAVSHLSPYLH 260

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS----VCMGKP 306
            G +SP +    ++E  V   +           EL     ++                  
Sbjct: 261 FGQISPVEIALAVREAGVVSGVATYLEELIVRRELAMNHAFQAPAYDRYEVLPEWARQTL 320

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
               ++           +A     T     +AAM ++   G+MHNRLRM     ++    
Sbjct: 321 ADHASDPRPHLYTRDQFEA---AETHDSYWNAAMLEMRATGYMHNRLRMYWGKKILHWSA 377

Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAST-----GNDSV-PYFRIFNPTIQGKR 417
                 E          LDG   ++     W         G   V    R   P    K+
Sbjct: 378 SPEEAWETALALNNRWFLDGRDPNSFTNVGWLFGLHDRPWGPQPVFGTVRSMGPNTF-KK 436

Query: 418 FDPQGTFIRH 427
           FD +  ++R 
Sbjct: 437 FDAEA-YVRQ 445


>gi|113954353|ref|YP_729493.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
 gi|113881704|gb|ABI46662.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
          Length = 315

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 5/186 (2%)

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
                Y   R+      T  LSPY+  G+L+  +  + +  +      +  +G    +NE
Sbjct: 61  MDAKRYGRSRNHLNGSVTR-LSPYIRHGILTLAEVRDAVFSQLKQTSQRRDNG-EKLINE 118

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++ +                T       +  L    ++G T    +D    +L 
Sbjct: 119 LGWRDFWQRMWLDLGDRIHDDQEDHKTGHAASEYEQGLPDDIREGRTNLACMDGFRNELV 178

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T GW+HN  RM  A++LV    V WR+G ++F+  LLDGD ASN+  WQW AS      P
Sbjct: 179 TQGWLHNHARMWMAAYLVHWRRVHWRVGADWFLEHLLDGDPASNHLSWQWVASC-FSHKP 237

Query: 405 YFRIFN 410
           YF  FN
Sbjct: 238 YF--FN 241


>gi|320102681|ref|YP_004178272.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749963|gb|ADV61723.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 456

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSPYL  GVL+  +  N   +            A  ++NEL WR+
Sbjct: 64  YERTRNYLDGAVTR-LSPYLRHGVLTLAEVRNHALKLVK-----HPVEAAKFINELGWRD 117

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ +                T        + L Q   +G TG   +D   R+L   G++
Sbjct: 118 YWQRVYERLGDGVWRDREPYKTGYSARRYAAELPQEIAEGQTGMACMDEFARELRDTGYL 177

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A+++V    V W+ G  +F+  LLDGD ASNN  WQW AST     PY  +F
Sbjct: 178 HNHARMWLAAYVVHWRQVRWQAGATWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--VF 234

Query: 410 N 410
           N
Sbjct: 235 N 235


>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
          Length = 530

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 118/414 (28%), Gaps = 43/414 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
             M V L W+  D R+ DN A   A   +      +   F   P+   +     R   F+
Sbjct: 67  IKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAET---LRHYTFM 122

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDD-----------------------SIEWLDSYC 98
              L +V+K   +  I F     ++  D                         + + S  
Sbjct: 123 IEGLKEVEKECRELCIPFHITSATSIPDNKLIKTGIKRKLSESINDYYADKVAQSILSVI 182

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
               ++ +  +           K L + L   +     D   ++P     +H     +  
Sbjct: 183 QSANISCIITDFSPLREPSSWIKGLSEVLPENIPFCQVDAHNIVPVWHASDHLEYAARTI 242

Query: 159 TPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
            P        L+      ++        L        +  F              G  + 
Sbjct: 243 RPSLHQKANTLMTEFPPLIKHPCYHQYDLPPIDWDYWMSEFSGDISVKPVDWIIPGTNSG 302

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  L KF  E++  Y + R+ P     S LSP+   G ++P++    L E  +       
Sbjct: 303 LTTLHKFIHERLSKYADCRNDPTKNCLSDLSPWFHYGQVAPQRA---LIEVKLWRHKYKD 359

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QG 329
           S         I RE   +   + P     +    W +                       
Sbjct: 360 SVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQHAHDKRNPSYSEETMVSA 419

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            T   + +AA RQL   G +H  LRM  A  +++          +     L D 
Sbjct: 420 DTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILEWHEDGPSAALK-LAFYLNDH 472


>gi|156744165|ref|YP_001434294.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235493|gb|ABU60276.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 270

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPY+  GVLS  +  +                    ++EL WR++++ L        
Sbjct: 67  THLSPYIRHGVLSLAEVRDAALSRVRRSADA-----AKLVSELGWRDYWQRLYERLGDNV 121

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T     +  + L     +G TG   IDA   +L   G++HN  RM  A+++V
Sbjct: 122 WRDQESYKTGYCAGDYAAELPDDIIEGRTGLACIDAFSHELRATGYLHNHARMWLAAYVV 181

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
               + W+ G  +F+  LLDGD ASNN  WQW AST     PY  IFN
Sbjct: 182 HWRRIRWQAGARWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--IFN 226


>gi|149198711|ref|ZP_01875754.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138147|gb|EDM26557.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 365

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPY+S GV+S R  ++ L +   +L          ++ EL WR++++    FY    
Sbjct: 35  SCLSPYISRGVISTRTVYDSLIKRGYNLEKI-----EKFVQELAWRDYWQSQWKFYG--- 86

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K         +   +  +     +G     + + A++QLN+ G++HN +RM  A  + 
Sbjct: 87  -IKINKDLRHTQQAFHNHGMPHCLVKGQCSIQMFNTAIKQLNSTGYLHNHMRMYLAMSIC 145

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
                 W    ++    L+DGD ASN   WQW A  
Sbjct: 146 NIGSYHWHKPAQWMYYNLIDGDWASNALSWQWVAGC 181


>gi|167846552|ref|ZP_02472060.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
          B7210]
          Length = 108

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61 IYASLL 66
          ++ SL 
Sbjct: 59 LHGSLR 64


>gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
           50983]
 gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
           50983]
          Length = 506

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 116/408 (28%), Gaps = 27/408 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F    L  
Sbjct: 28  IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +LSQ  I F       F   +  +      + V   F   +     V       KRL
Sbjct: 85  VAANLSQLNIPFAIEASPKFPAFLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144

Query: 128 ---------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                     + V C    D +     +I       +  +      L ++          
Sbjct: 145 DIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKRHPYTISDDVHF 204

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                       +N               +    ++A   L     + +  Y  QR+ P 
Sbjct: 205 HTVTTSEIDALLTNEEIVGKLDEAVKPIDWLTPGEDAGLQLALGYVKHMPNYSTQRNNPT 264

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSPY   G +SP++      + +    I  +         +I RE   +   + 
Sbjct: 265 NPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCMIRRELADNFCYYN 321

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNR 352
            +    + F  W +           +         +  T   + +A  RQ+   G +H  
Sbjct: 322 DNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLEKADTHDRLWNATQRQMVETGKIHGY 381

Query: 353 LRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           +RM     +++         E          LDG   +   G  W   
Sbjct: 382 MRMYWCKKILEWTRSPEEALEFSIYLNDKYELDGRDPNGYVGIAWCIG 429


>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
 gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
 gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
 gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
 gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
          Length = 445

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 120/394 (30%), Gaps = 21/394 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  + RI DN  LY A   +    + +++        H  ++R   F+   L  V+ 
Sbjct: 21  VYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVC-LTSFHLTTSRHVTFLLEGLRDVED 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              ++   F       +      L     ++    +F +        +    + + L+  
Sbjct: 80  ECVKRSFGFVVR----YGRPEVVLPEEVKKRNARWVFVDFYPLRVPEKDISNVVESLKDV 135

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                 D   ++P     +      + +    + L+   +         P       V  
Sbjct: 136 ATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPNIGKHPYPVQDVYVED 195

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                    P + I      G +     L+   +    +     + P  +  S LSP+L 
Sbjct: 196 YTPVLDDVPPIRDIKAGTKEGLKTLRAFLKHTLRYYYAFK----NDPTARACSGLSPWLH 251

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G LS ++      +  V   I P S A      ++ RE   +   +           PW
Sbjct: 252 YGHLSAQRVV---LDTVVYASIYPASVAAFLDEIVVRRELSDNFCYYNKRYDSITSTHPW 308

Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                   + +     +   + +   T  P+ +AA  Q+   G MH  LRM  A  +++ 
Sbjct: 309 ALRTLDEHRRDTRPYLYDTYSLEHARTHDPLWNAAQLQMVREGKMHGYLRMYWAKKILEW 368

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
                              LDG   +   G  WA
Sbjct: 369 SETPESALSVCIYLNDKYELDGTDPNGYVGCLWA 402


>gi|33864760|ref|NP_896319.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632283|emb|CAE06739.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 299

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + R+      T  LSPY+  GVL+  +    + E         K      +NEL WR+
Sbjct: 60  YAKSRNHLNGAVTG-LSPYIRHGVLTLAEVKQAVFERIRKRDDGGK-----LINELGWRD 113

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +                T     +    L Q  + G TG   +D    +L T GW+
Sbjct: 114 FWQRMWLDLGDGIHDDQEAFKTGHDASSYARELPQDVRDGRTGLACMDGFRDKLVTTGWL 173

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A++LV    V W  G  +F+  LLDGD ASN+  WQW AS+     PYF  F
Sbjct: 174 HNHARMWMAAWLVHWRRVHWTAGANWFLEHLLDGDPASNHLSWQWVASS-FSHKPYF--F 230

Query: 410 N 410
           N
Sbjct: 231 N 231


>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
           subsp. patens]
 gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
           subsp. patens]
          Length = 495

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 118/396 (29%), Gaps = 11/396 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R  DN AL  A H +  K + V +A           AR   F+   L  V++
Sbjct: 30  VYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESFLEARARHFGFMLRGLRVVEQ 89

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +L    I F   + +  +   E+L         +     ++    +  + E     +   
Sbjct: 90  NLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSLRIGRQWRNGVCENVASSVAVA 149

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +    +   +  S  L  G+         ++     +  +         +     I   
Sbjct: 150 EVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEYPVLENPGKPWEAGAPDTIDWD 209

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   +            +       +      + F   ++  YV + D     G S L
Sbjct: 210 ALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVNIRIRNYVNRNDPSKPTGLSGL 269

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VC 302
           SPYL  G +S ++C    ++          +     +      E + H    Y +     
Sbjct: 270 SPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIVRGGLAENFCHYQPNYDNLKGAW 329

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                       +  +  +     + G T   + +AA  ++   G MH  +RM  A  ++
Sbjct: 330 GWAQESLRIHAKDKREVVYTESELEAGKTHDKLWNAAQLEMVYYGKMHGFMRMYWAKKIL 389

Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           +                    LDG   +   G  W+
Sbjct: 390 EWTESPEEALRIAIYLNDKYELDGRDPNGYVGCMWS 425


>gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
 gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
          Length = 506

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 119/410 (29%), Gaps = 31/410 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F    L  
Sbjct: 28  IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +LSQ  I F       F   +  +      + V   F   +     V       KRL
Sbjct: 85  VAANLSQLNIPFAIETSPKFPALLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144

Query: 128 QHRVICKSFDDSVLLPPGSILN-----------HALQMYKVYTPFRKALIQNLVQADLRS 176
             R       + V     S                          R       +  D+  
Sbjct: 145 DIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKRHAYTISDDVHF 204

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             V    +   +T   I    D   + ID + P   ++A   L     + +  Y  QR+ 
Sbjct: 205 HTVTTSEIEALLTNDEIVGKLDKAVEPIDWLTPG--EDAGLQLALGYVKNLPNYSTQRNN 262

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S LSPY   G +SP++      + +    I  +         +I RE   +   
Sbjct: 263 PTNPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCMIRRELADNFCY 319

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    + F  W +           +            T   + +A  RQ+   G +H
Sbjct: 320 YNDNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLENADTHDRLWNATQRQMVETGKIH 379

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +RM     +++         E          LDG   +   G  W   
Sbjct: 380 GYMRMYWCKKILEWTKSPEEALEFSIYLNDKYELDGRDPNGYVGIAWCIG 429


>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
 gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
          Length = 445

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 119/397 (29%), Gaps = 27/397 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVF---IATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  + RI DN  LY A   +    + ++     TP     H  ++R   F+   L +
Sbjct: 21  VYWMYREHRIRDNWGLYYAQQKALRYRVPLYVCVCLTP----FHLTTSRHMAFLLEGLRE 76

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+    ++   F       +    + L     +     +F +        +    +   L
Sbjct: 77  VEDECVKRSFGFVLR----YGCPKDVLPEEVKKHNARWIFVDFYPLRYPEKDISDVVTAL 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +        D   ++P            + +    + L+   +      +  P       
Sbjct: 133 RDVATIIQVDSHNIVPCWIASLKQEYSARTFRLKIQKLLTTYLTKFPSVIKHPYPVQDVY 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V           P + I      G +     L+   +    +     + P +   S LSP
Sbjct: 193 VEDFTPTLDDVSPIRGITAGNKGGMRKLRAFLKHKLRYYHEFK----NDPTVDACSGLSP 248

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS ++      E        P+S A      ++ RE   +   +          
Sbjct: 249 WLRYGHLSAQRVV---LETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYDSITST 305

Query: 308 IPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            PW        + +     +   + +   T  P+ + A  Q+   G MH  LRM  A  +
Sbjct: 306 HPWALRTLDDHRQDLRPYLYDTSSLEHARTHDPLWNTAQLQMINEGKMHGYLRMYWAKKI 365

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           ++                    LDG   +   G  WA
Sbjct: 366 LEWSKTPESALSVCIYLNDKYELDGTDPNGYVGCLWA 402


>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
          Length = 631

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 131/446 (29%), Gaps = 37/446 (8%)

Query: 16  NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D+R+ DN AL     A  + +  ++ + +  P    Q     R   F      +V+  L
Sbjct: 82  RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139

Query: 73  SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
               I F+                     E  D+      V      R          ++
Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
             + L       +            L  A +  +                  R   P   
Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +L        +      P + +D   P  +     +      + +  Y + R+ P    
Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGV 319

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300
            S LSPY+  G +S ++C   + +       K  K G  S+++E++ R        F+  
Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379

Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                   P            +  +  +   A + G T   + +AA  QL   G MH  L
Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405
           RM  A  +++         +          LDG   +   G  W+   G     +     
Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498

Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD +  F+R +
Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
          Length = 631

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 131/446 (29%), Gaps = 37/446 (8%)

Query: 16  NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D+R+ DN AL     A  + +  ++ + +  P    Q     R   F      +V+  L
Sbjct: 82  RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139

Query: 73  SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
               I F+                     E  D+      V      R          ++
Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
             + L       +            L  A +  +                  R   P   
Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +L        +      P + +D   P  +     +      + +  Y + R+ P    
Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGV 319

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300
            S LSPY+  G +S ++C   + +       K  K G  S+++E++ R        F+  
Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379

Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                   P            +  +  +   A + G T   + +AA  QL   G MH  L
Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405
           RM  A  +++         +          LDG   +   G  W+   G     +     
Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498

Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD +  F+R +
Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
 gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
          Length = 460

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 128/421 (30%), Gaps = 28/421 (6%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N AL  A   ++A    V +           + R   F+   L   +++L ++GI     
Sbjct: 34  NHALEYAIRKANALCQPVVVFFGIVDDFPEANERHYFFMLEGLCDAKRTLEKRGIQLVIQ 93

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
            CS     +       L          ++   N                +    +++   
Sbjct: 94  HCSPELGVVMMSRDASLVVVDRGYLRIQKAWRNVAAASMDCPLIQVESDVVVPIEETSSK 153

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
              S      ++++    +  +L +    AD  SL   +           I R       
Sbjct: 154 EEYSAATIRKKIHQKLNQYLISLEETKPMADSLSLDFES--FPIDDVERAILRLDIDRSV 211

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                F  G +     L  F  +K+ +Y E R+ P +   S +SPYL  G +SP      
Sbjct: 212 KCVSFFRGGFEEGRKHLDVFIDQKLEHYAEHRNDPTLDCLSLMSPYLHFGQISPLYI--- 268

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEW 316
                  L     S        ++ RE   + + +       +    W      T + + 
Sbjct: 269 ---ALRILNSGRTSSEAYLEELIVRRELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQ 325

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
               +  +  + G T  P  +AA +++   G MH  +RM     +++             
Sbjct: 326 RPYHYSRKELEDGKTHDPYWNAAQKEMVLKGKMHGYMRMYWGKKIIEWCETPEEAFHTAI 385

Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQGTFI 425
                  LDG   +   G  W    G    P+         R  N     ++FD  G ++
Sbjct: 386 YLNNKYELDGREPNGFMGVAW--CFGKHDRPWRERNIFGNVRYMNDRGLKRKFDADG-YV 442

Query: 426 R 426
           +
Sbjct: 443 K 443


>gi|168038306|ref|XP_001771642.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677081|gb|EDQ63556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 665

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL---- 65
            ++W ++DLR+ D+  + AA   +  +V+ V+I  P               +  SL    
Sbjct: 1   AILWFKHDLRLDDHPGVAAAS--AYKRVLPVYIFDPYVCAGWSKE------LLESLCDAV 52

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K L   G                 L     +   T +    + E    R    + +
Sbjct: 53  SDLRKELRLLGSDLIVLTART----EHVLSRLAQKIGATSIITEEEVESTWQRTVHSVLE 108

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
            L+        +  + L   S   +            +A  +
Sbjct: 109 SLEKEEPSSISETKLELDQWSAPLYDTPESASIPDNYQAFQR 150


>gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
 gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
          Length = 405

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 9/211 (4%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             P  A  P    G       L K   +                 SQLSPYL   +++  
Sbjct: 1   MTPDTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPEQGHPHVSQLSPYLRHRLVTEG 60

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           +  + +      L       A  ++ E+ WR +++  +   PSV M             +
Sbjct: 61  EVLDAV------LGRFSLKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLH 114

Query: 318 KDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
            +S     W    +G TG    DA  R+L + G+MHN  RM  AS  +  L + W +G +
Sbjct: 115 VESGFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGAD 174

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +F+  LLDGD ASN   W+W A        Y
Sbjct: 175 FFLRHLLDGDAASNTLSWRWVAGLQTQGKNY 205


>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
 gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
          Length = 631

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 128/446 (28%), Gaps = 37/446 (8%)

Query: 16  NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D+R+ DN AL     A  + +  ++ + +  P    Q     R   F      +V+  L
Sbjct: 82  RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139

Query: 73  SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
               I F+                     E  D+      V      R          ++
Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
             + L       +            L  A +  +                  R   P   
Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +L        +      P + +D   P  +     +      + +  Y + R+ P    
Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPLAGV 319

Query: 242 TSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            S LSPY+  G +S  R      K +        K G  S+++E++ R        F+  
Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379

Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                   P            +  +  +   A + G T   + +AA  QL   G MH  L
Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405
           RM  A  +++         +          LDG   +   G  W+   G     +     
Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498

Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD +  F+R +
Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|219848494|ref|YP_002462927.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
 gi|219542753|gb|ACL24491.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
          Length = 271

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   R+  A +  SQLSPYL  GVL+  +  + +   F             ++NEL WR
Sbjct: 52  NYARTRNDVARRTVSQLSPYLRHGVLTLAEVRDSILNRFG-----HTPDTEKFVNELAWR 106

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            F++ + A           +   +         L        TG   ID ++++L T G+
Sbjct: 107 AFWQIVYAHLGERIHHD--LEPAKHRSRVARRSLPPEVLTATTGLVCIDESLQELYTTGY 164

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHN  RM  A++L   L VDWR G + F   LLDGD ASN+  WQW   +     PY  I
Sbjct: 165 MHNHARMWVAAYLQHWLGVDWREGADLFYRHLLDGDPASNSLSWQWV-GSTFSHKPY--I 221

Query: 409 FN 410
           FN
Sbjct: 222 FN 223


>gi|260436077|ref|ZP_05790047.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
 gi|260413951|gb|EEX07247.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
          Length = 303

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +Y + R+      T  LSPY+  GVL+  +  + +     +     K      +NEL WR
Sbjct: 59  HYAKSRNHLKGAVTG-LSPYIRHGVLTLAEVRDSVFARIRNRDEGGK-----LINELGWR 112

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F++ +                T          L    + G TG   +D    QL T GW
Sbjct: 113 DFWQRMWLDLGDAINNDQEPFKTGHDAGAYARELPADVRAGSTGLACMDGFRDQLVTTGW 172

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST     PYF  
Sbjct: 173 LHNHARMWMAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVAST-FSHKPYF-- 229

Query: 409 FN 410
           FN
Sbjct: 230 FN 231


>gi|317406428|gb|EFV86641.1| hypothetical protein HMPREF0005_05613 [Achromobacter xylosoxidans
           C54]
          Length = 151

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+WLR DLR+ DN     A   ++    A+FIA P QWR HG +  +  F   +L 
Sbjct: 1   MHT-LIWLRTDLRLHDNP--ALAAAAAEGTATALFIAAPGQWRLHGDAPAKVDFWLRNLR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L++ GI  +      +D   + L  +C +  +T +  N ++ +NE RRD  +  R
Sbjct: 58  TLSRDLARLGIPLKLLTVDTWDQVPDALPRFCREHGITAVHANTEWAVNERRRDDAVACR 117

Query: 127 LQHRVICKSFDD 138
           L    I  +   
Sbjct: 118 LAEAGIDWTLHH 129


>gi|148654199|ref|YP_001274404.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
 gi|148566309|gb|ABQ88454.1| Deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
          Length = 270

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPY+  GVLS  +  +              + A   ++EL WR++++ L        
Sbjct: 67  THLSPYIRYGVLSLAEVRDAALSRVRR-----PADAAKLVSELGWRDYWQRLYERLGDDV 121

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T        + L     +G TG   +DA  R L + G++HN  RM  AS++V
Sbjct: 122 WRDQEPYKTGYRADEYAAELPDDIIEGRTGLACMDAFSRDLRSTGYLHNHARMWLASYVV 181

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
               V W+ G  +F+  LLDGD ASNN  WQW AST     PY  IFN
Sbjct: 182 HWRRVAWQAGARWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--IFN 226


>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 452

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 133/410 (32%), Gaps = 24/410 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N+AL  +          +  VF              RQ HF+   L +
Sbjct: 21  IYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATY---RQYHFMLEGLRE 77

Query: 68  VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L +  I F   QCS       + L+ Y        +  +        +  +     
Sbjct: 78  IELLLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQQAAAS 137

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V     D   ++P  +         + + P    L+   +Q       +P      
Sbjct: 138 L--KVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVEAMPHRAELQ 195

Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V    +              +   GE+ A   LR+F  EK+  Y E R+ P  +GTS L
Sbjct: 196 KVNWREVFANLSVDRTVEPIDWLKPGERAASEHLRRFISEKLPRYSELRNDPTAEGTSLL 255

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G LS  Q    ++          +S A      ++ RE   +  A        +
Sbjct: 256 SAYLHFGQLSAAQVALEVQ----SSGAPEESKAAFLEELIVRRELSDNYCAHQEQYDAYE 311

Query: 306 PFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               W  +                Q ++   T   + +AA ++L   G +H  +RM  A 
Sbjct: 312 GLPGWARQSLEQHSLDPRETLYSPQEFETAATHDRLWNAAQKELLHTGRIHGYMRMYWAK 371

Query: 360 FLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            +++         E          LDG   +   G  W+   G    P+F
Sbjct: 372 KILEWSPSPREAFETALWLNDRYALDGRDPNGYSGVAWSIG-GLHDRPWF 420


>gi|159469510|ref|XP_001692906.1| CPD photolyase class II [Chlamydomonas reinhardtii]
 gi|158277708|gb|EDP03475.1| CPD photolyase class II [Chlamydomonas reinhardtii]
          Length = 946

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W+  D R+ DN AL  A   +       +V   F   P      G  ARQ  F+   L
Sbjct: 69  VYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGARQFGFMLRGL 125

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+   L  +GI F   +     D +  L           L +  +    ++R       
Sbjct: 126 RQLAPRLEARGIKFYLLK----GDPVHTLPQLVSGLGAGLLGWAERAVFGKIRYMNYNGC 181


>gi|222525279|ref|YP_002569750.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
 gi|222449158|gb|ACM53424.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
          Length = 271

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                       LR+     V++Y   R+    +G S LSPYL  G+LS  +  + +   
Sbjct: 30  QPSPIRGGRRAALRRLRAFNVHHYARTRNDVVQRGVSMLSPYLRHGMLSLAEVRDSIL-- 87

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
                         ++NEL WR F++ + A           I   +         L    
Sbjct: 88  ---GRFGITPDTEKFVNELAWRAFWQLVYAHLGDRIHHD--IEPAKHKARVPRRRLPPDV 142

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
               TG   ID ++R+L T+G+MHN  RM  A++L+  L VDWR G + F   LLDGD A
Sbjct: 143 TAATTGLVCIDESLRELYTVGYMHNHARMWVAAYLIHWLGVDWREGADLFYRHLLDGDPA 202

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN 410
           SN+  WQW  ST     PY  IFN
Sbjct: 203 SNSLSWQWVNST-FSHKPY--IFN 223


>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax SaI-1]
 gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
          Length = 973

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 140/414 (33%), Gaps = 20/414 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+ L  D R  DN AL  A   +  K + + IA     R+  +++R  +     L  +++
Sbjct: 494 LLLLTRDFRANDNWALTYAYELAKKKGLNL-IACTYLNRKEKLTSRFINAKLKVLKNLEQ 552

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q  I F        D+  E++ ++ ++     L               +  KR    
Sbjct: 553 ALKQMNIPFYILPLFMIDEFKEFIKTHHIKVIACDLHVLNDERAFIKSLCHICNKRKVKV 612

Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 +     +   G   +      K+       L + ++ +         I+   P 
Sbjct: 613 FQVDSHNVIPIWVTSKGEECSVRTIKPKIQALLPTFLTEYVLLSPFEQ----KIKFPEPF 668

Query: 189 TPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +           +       E+ A  +L  FC++ +  Y  +R+ P     + L P
Sbjct: 669 DMEEVASKLTVTNTCAVVSGAVFTEKKAQELLSHFCRQVLDKYNVKRNDPNSDAATVLLP 728

Query: 248 YLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGK 305
           Y+++GV+S ++C   + +  + +  I   SG  S+ ++ I R E   +   +  + C  +
Sbjct: 729 YVNMGVISAQRCILEVHKHAYSNPSINAVSGKESFTDDFIMRKELADNYCYYNRNYCTFE 788

Query: 306 PFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               W          +  +  +  + ++   T   + +    QL   G MH  L++  A 
Sbjct: 789 GGRDWAKESLKKHDADKREYLYDYEDFRTAKTHSDLWNCCQLQLIDEGVMHEFLKVYWAK 848

Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIF 409
                  +  V  +   +      +DG   S      W      +       IF
Sbjct: 849 KILNWSANSQVALKYAMQLNEEFSIDGKTPSGYVSIMWSIMGVHDQGWNERNIF 902


>gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54]
 gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54]
          Length = 458

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 126/395 (31%), Gaps = 15/395 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   + ++   ++ VF   P+          Q  F+   L +
Sbjct: 28  VYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGAKSS---QYLFMLRGLAR 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L +  I F   + S      + L  +  Q     L  +      + +  + L  ++
Sbjct: 85  MQKKLHEMNIHFTLFEQS----PDDILPGFLRQIDAHLLVSDFDPLRIKRQWTEQLIAQV 140

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      + +     S               R           L+  P         
Sbjct: 141 VTPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPLQHHPFSWAHTLAL 200

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              S++ R       +   +   GE +A      F K  +  Y E+R+ P + G S LSP
Sbjct: 201 AGSSSLARVISTLNSSGCELRGAGEASAQFAADSFIKIGLENYSERRNNPCLNGQSGLSP 260

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G LS ++    +  + + +  K        +   +   F  +   +          
Sbjct: 261 YLHFGHLSAQRLAWVVSRDKLPIETKEPFLEELIVRRELSDNFCLYEPLYDTFAGFPAWA 320

Query: 308 IPWTEKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               ++   ++    +     + G T   + +A    L   G +H  LRM  A  +++  
Sbjct: 321 RKSLDQHRCDERAYLYSFHDLEAGNTHEQLWNACQIDLVQSGKLHGYLRMYWAKKILEWT 380

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
                  E          LDG   +   G  W+  
Sbjct: 381 PNPETALEYAIRLNDRYSLDGRDPNGYAGVAWSIG 415


>gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 461

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 15/203 (7%)

Query: 229 YYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +Y   R+           S LSP+L   +++  +    +            + A  ++ E
Sbjct: 85  HYASTRNYDFGTERRSNVSGLSPWLRHRLITETEVLAAVLA------SHNFNAAEKFVQE 138

Query: 285 LIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + WR +++  +   PSV                + +           G TG    D  +R
Sbjct: 139 VFWRTYFKGWLEQRPSVWTLYQRDLSHACERLSDDDCLRARFSDAVNGNTGIDCFDHWVR 198

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G++HN  RM  AS  +  L + W++G ++F+  LLDGD ASN   W+W       
Sbjct: 199 ELLVTGYLHNHARMWFASIWIFTLRLPWQLGADFFLRHLLDGDPASNTLSWRWVGGLHTK 258

Query: 402 SVPYF-RIFNPTIQGK-RFDPQG 422
              Y  R  N     + RF P+G
Sbjct: 259 GKTYLARPDNIAKYTEGRFQPKG 281


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300072543|gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++S R     + + +   +         ++ EL WR FYR++ +   +    
Sbjct: 75  LSPYLTHGMVSLRDVLAGVCQRYPLEVQHK------FVYELGWRAFYRYVWSRRGARIFD 128

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     E      L    + G TG P+ID A+R L   G +HN  RM  AS++V  
Sbjct: 129 SLHAGPL--PEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMWLASYVVHL 186

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             V WR G ++ +  LLDGDLASN+  WQW A TG+   PY   FN
Sbjct: 187 RKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGS-HKPYL--FN 229


>gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni]
 gi|238660033|emb|CAZ31051.1| DNA photolyase, putative [Schistosoma mansoni]
          Length = 533

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 118/421 (28%), Gaps = 46/421 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQ 57
           +K+   M V L W+  D R+ DN A   A   +      +   F   P+   +     R 
Sbjct: 63  LKSGNKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCLVPKFQAET---LRH 118

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSN--------------------------FDDSI 91
             F+   L +V+K   +  I F                                  D   
Sbjct: 119 YTFMVEGLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTVA 178

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
           + + S      ++ +  +           K L + L   +     D   ++P     +H 
Sbjct: 179 QSVLSLIQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQVDAHNVVPVWHASDHL 238

Query: 152 LQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
               +   P       NL+      +R        L+       I +F            
Sbjct: 239 EYAARTIRPKLHQKANNLMTEFPPLIRHPYCHQSSLSPIDWNYWISKFSGDLSVKPVDWA 298

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             G    L  L  F  E++  Y + R+ P     S LSP+   G ++P++      E  +
Sbjct: 299 IPGTSGGLTTLHTFIYERLPKYADCRNDPTKNCLSNLSPWFHYGQIAPQRAI---MEVKL 355

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-- 326
                  S         I RE   +   + P     +    W +                
Sbjct: 356 WRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQHAHDKRNPSYS 415

Query: 327 ----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                   T   + +AA  QL   G +H  LRM  A  +++          +     L D
Sbjct: 416 EEIMISAETKDDLWNAAQHQLVRSGKLHGFLRMYWAKKILEWHESGPSAALK-LALYLND 474

Query: 383 G 383
            
Sbjct: 475 H 475


>gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
          Length = 515

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 138/436 (31%), Gaps = 27/436 (6%)

Query: 23  NKALYAACHNSDA---KVIAVFIA--TPEQWRQHGISARQSHFIYASLLQVQKSLSQ-KG 76
           N AL  AC  ++     V+A F+             + R+  F+   L   +K L + + 
Sbjct: 51  NVALELACQKANEHQVPVLACFVFPTDKRLDNFPPETERRCVFMLDGLRDFEKRLKKERN 110

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           I          +  I  L   C +  V   +   Q + +EV  +           +    
Sbjct: 111 IDLVVLYGKC-EILIAKLAENCCEVVVDAGYMRYQNKYDEVNNNIECRFTKVETNVVVPV 169

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
           +        +      +++K    +       +V A  + L    + L       N+   
Sbjct: 170 ELVSEKEEFAAYTIRPKIWKYAKQYLVEPECIMVIAKNKPLFSDNLPLIDLSQSDNVILA 229

Query: 197 FDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
                  +        G   A+ +L  F  +K+  Y + R+IP + G S LSPY++ G +
Sbjct: 230 KLNADTTVKKVANIHGGHSEAVKLLDNFVSKKLPNYDKLRNIPGLDGQSGLSPYINFGHI 289

Query: 255 SPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           S  +   ++   +    +            EL     + +   +    C+ K      + 
Sbjct: 290 STVEIILKVNASKANKSVKDAFVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTLKL 349

Query: 314 IEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
               K  ++      ++G T     +A   +L   G M+  +RM     +++      R 
Sbjct: 350 QAKAKREYIYTSEQLEKGETHDQYWNACQLELVYEGKMNGYMRMYWGKKVIEWTANHTRK 409

Query: 372 GEEYFMSQLLD------GDLASNNGGWQWA------ASTGNDSVPYFRIFNPTIQGKRFD 419
                   + D       D  +   G  W       A +        R  N +   ++F 
Sbjct: 410 VMNNCAFSMNDKYELDGRDP-NGFAGVAWVFGKHDRAHSRRQIFGTLRYMNSSGLERKFK 468

Query: 420 PQ-GTFIRHWLPELNN 434
           P    +++H   EL  
Sbjct: 469 PHLKDYVKH-CYELAG 483


>gi|68164596|gb|AAY87325.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           BAC17H8]
          Length = 269

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 9/178 (5%)

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+      T  LSPY+  GVLS  +  N       D           ++ EL WR++++
Sbjct: 59  SRNHLDGAVTR-LSPYIRHGVLSLDEVRNHAVAAVRDPREA-----EKFVQELAWRDYWQ 112

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   +P           T       +  L        TG   ID     L   G++HN 
Sbjct: 113 RIYLAHPDRIWNDVEAYKTGFDAGEYEQDLPGDVADAETGVACIDQFATMLMETGYLHNH 172

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            RM  A+++V    V W+ G  +F+  L+D D ASNN  WQW AS          IFN
Sbjct: 173 ARMYLAAYIVHWRRVSWQAGARWFLEHLIDADPASNNLSWQWVAS---TFSNKPYIFN 227


>gi|294084366|ref|YP_003551124.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663939|gb|ADE39040.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 267

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
                 Y   R+      +  LSPY+  G++S     N       +           ++ 
Sbjct: 48  NINPDQYAHTRNYLDGDVSR-LSPYIRHGIISLNDVRNHALSISGE-----PQQTEKFIQ 101

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WR++++      P           T     +    L    + G TG  +ID  + +L
Sbjct: 102 ELAWRDYWQRRYRQNPHDIWHDIEAYKTGFTADDYAETLPADIEAGETGVAVIDHFIHEL 161

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
            T G++HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST   + 
Sbjct: 162 CTTGYLHNHARMYVAAYIVHWRRIKWQAGAQWFLHHLLDGDPASNNLSWQWVAST-FANK 220

Query: 404 PYFRIFN 410
           PYF  +N
Sbjct: 221 PYF--YN 225


>gi|159471433|ref|XP_001693861.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283364|gb|EDP09115.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 742

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD------------AKVIAVFIATPEQWRQHGI---SA 55
           LVW RNDLR+ D+  L AA                   ++ +++  P++           
Sbjct: 24  LVWFRNDLRLDDHPGLTAAAAACRTGSGSGSGSGSGRALLPLYVLDPQRLSHLAYMPGGP 83

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
                + ++L +++  L   G        +      E
Sbjct: 84  ---EALSSALQRLRSELRALGSDLVVRLGAWEQQLPE 117


>gi|296135394|ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795516|gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 396

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 9/186 (4%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+    + T  LSPYL+ G L  R     L       L          L EL WR 
Sbjct: 30  YARSRNHLEGRVTR-LSPYLTHGFLGLRDVVQHLSMRHGLGL------QDKLLQELGWRA 82

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F++ +        +           +      L    ++G T  P+ID A+R L   G++
Sbjct: 83  FFQQVWRHEGKGILQS--QHPGPLPDRAYAPALPADLREGRTDVPVIDQAVRTLYATGYL 140

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG+     F   
Sbjct: 141 HNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSSKPYLFNAD 200

Query: 410 NPTIQG 415
           N     
Sbjct: 201 NVAKYA 206


>gi|254486393|ref|ZP_05099598.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
 gi|214043262|gb|EEB83900.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
          Length = 403

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 9/164 (5%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G++S  +    + ++              ++ E++WR +++  +A  PSV   
Sbjct: 49  LSPYLRTGLVSQSEVLRTVLDQHSAKDA------DRYIAEVLWRSYWQGWLALRPSVWDA 102

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGY---TGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                          S L Q W+      TG    DA   +L   G++HN  RM  AS  
Sbjct: 103 YQADLKRLHNAVQTQSGLRQRWENACLGQTGIAPFDAWANELAHSGYLHNHARMWFASIW 162

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           V  L + W++G ++F+  LLDG  ASN  GW+W A       PY
Sbjct: 163 VHTLELPWQLGADFFLRHLLDGCPASNTLGWKWVAGIQTIGKPY 206


>gi|116071562|ref|ZP_01468830.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065185|gb|EAU70943.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 298

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 9/190 (4%)

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           +  K     Y   R+      T  LSPY+  GV +  +  + +        I  +     
Sbjct: 51  QIQKMDGKRYARSRNHLNGAVTR-LSPYIRHGVFTLAEVRDAVFR-----GISKRDDGSK 104

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +NEL WR+F++ +                T     +    L    + G TG   +D   
Sbjct: 105 LINELGWRDFWQRMWQNLGDRINDDQEELKTGHSAASYSRELPDDVRDGCTGLACMDGFR 164

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            +L + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST  
Sbjct: 165 NELVSTGWLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIAST-F 223

Query: 401 DSVPYFRIFN 410
              PYF  FN
Sbjct: 224 SHKPYF--FN 231


>gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
           2228]
          Length = 454

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 121/383 (31%), Gaps = 8/383 (2%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R+  N+AL  A   ++     + I      +          F+   L +++  L  +   
Sbjct: 31  RLEYNQALGYAIEKANELNQPLLIFFLIDAKFPEAKTAHFKFMLQGLKELKTKLKNEDFN 90

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F     +  +D  +      L         + +   N+V     +   L    +    ++
Sbjct: 91  FYLIDYNKLEDIKQITKKASLLISEKAYLKHLRKWKNQVAAKVKIPFYLVESNLICPIEE 150

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                  +      ++ K+   + K      ++   +                 +     
Sbjct: 151 VSDKEEYAAYTIRKKINKIKNEYLKEYQLQRLKNKNKIEFENKNLKFVKNLNQYLENKNF 210

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
              Q +   F  G + A   L  F K K+  Y E+R+IP +   S LSPYL  G ++ ++
Sbjct: 211 ELQQDLSDHFRGGYKAAKLKLNDFLKNKLKDYEEKRNIPHLNFQSDLSPYLHFGQIAAQE 270

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
               L     +   K          EL +   Y +         +   +   +       
Sbjct: 271 IA--LAALNSEYDEKSFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEHQAD 328

Query: 319 DSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL---LVDWRIG 372
           +   L  +++     T     +AA +++   G MHN +RM     +++        ++  
Sbjct: 329 EREYLYTYQELENAKTHDKYWNAAQKEMLLTGKMHNYMRMYWGKKILEWNSDPEEAYQWA 388

Query: 373 EEYFMSQLLDGDLASNNGGWQWA 395
            +      LDG  A++  G  W 
Sbjct: 389 LKLNNKYSLDGRDANSYAGVAWI 411


>gi|331656727|ref|ZP_08357689.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
 gi|331054975|gb|EGI26984.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
          Length = 57

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
          M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I
Sbjct: 1  MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELI 55


>gi|224005941|ref|XP_002291931.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972450|gb|EED90782.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 485

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 126/407 (30%), Gaps = 51/407 (12%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQC-SNFDDSIEWLD--SYCLQQRVTKLFYNRQYEIN 115
            F +A+L     +L +KG         S     ++ L+  +  +   +     N    + 
Sbjct: 9   AFGHAALHSFNATLGKKGQRIHVLSSISMIAKMVKELNPTTIVVDVSLLDRHCNHASRLR 68

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLL------------PPGSILNHALQMYKVYTPFRK 163
           +                  S     +             P   I     +  +     R 
Sbjct: 69  DKLHCTNENNDSDDDCDYTSRYTDAIPNIIEVLDDGLLIPMNKIPKALGRSRQGGRILRW 128

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
           +         + ++  P   LT    P                + P    N     R+  
Sbjct: 129 STFLINAILPMENVEKPTWTLTSLPPPPLATTEGMEIILPEQCIAPPQINNLSSWTRQLL 188

Query: 224 KEKVYYYVE-----------QRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
            +      +                         ++LSPYL  GVLSP++          
Sbjct: 189 LDWGEVSEDEAIRRAKSTKSNISSSLLTEEGSQNTKLSPYLRWGVLSPQRAAKCGVRRRD 248

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            L        +  +  L   +     M    S           +K+  +    L + W  
Sbjct: 249 LLWRDWSHLCYGLVGPLRRGDAVLEYMNKACSDDTSD------DKLNADNKDELFRLWCV 302

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+ ++DA MRQL   GWM  + R++ A+ LV+ + V W++G ++F   L+D D A N
Sbjct: 303 GNTGYELVDAGMRQLWAEGWMSRKARLLAAACLVEGMGVSWQLGRDWFAYTLIDHDPAIN 362

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFD--PQG----TFIRHWL 429
              WQ A   G D   Y         G +++  P G     ++  W+
Sbjct: 363 EMMWQNAGLCGVDPFYY---------GLKWEVPPSGIEEVEYVERWI 400


>gi|126735413|ref|ZP_01751159.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
 gi|126715968|gb|EBA12833.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
          Length = 386

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 11/195 (5%)

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +R+   +   S LSPY+   +++                      A  ++ E+ WR +++
Sbjct: 27  KRNYDNLAHVSALSPYIRHRIITEEDVLKATLARHS------PQTAEKFIQEVYWRTYWK 80

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWM 349
             +   PSV                 +S L Q W    +G TG    D   +QL   G++
Sbjct: 81  GWLEMRPSVWAMYRSDLQAALNRVQTESGLRQEWEAACKGDTGIDCFDHWAKQLADTGYL 140

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RI 408
           HN  RM  AS  +  L + W +G ++FM  LLDGD ASN   W+W          Y  R 
Sbjct: 141 HNHARMWFASIWIFTLRLPWTLGADFFMRHLLDGDAASNTLSWRWVGGLQTIGKTYLARP 200

Query: 409 FNPTIQGK-RFDPQG 422
            N T   + RF P G
Sbjct: 201 DNITKYTEGRFHPTG 215


>gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 419

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 11/224 (4%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
               P    G         +                     S LSP++   +++  +   
Sbjct: 17  PNFKPTRAAGLARLAQFAERTGDLYDRCRNYDLGPEHRANVSALSPWIRHRLITETEVLT 76

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEKIEWNK 318
              +          + +  +++E+ WR +++  +  +P+V                +  +
Sbjct: 77  ATLDAHS------FNASERFVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQLKSAGKDRR 130

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
            +    A   G TG    D   ++L T G++HN  RM  AS  +  L + W +G ++F+ 
Sbjct: 131 LAANYAAAMAGETGIDGFDDWTKELLTTGYLHNHARMWFASIWIFTLGLPWELGADFFLR 190

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDP 420
            L+DGD ASN   W+W A       PY  R+ N +    +RF P
Sbjct: 191 HLMDGDPASNTLAWRWVAGIQTKGRPYVARVSNISKFTDQRFSP 234


>gi|297184363|gb|ADI20479.1| deoxyribodipyrimidine photolyase [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 278

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
               + + P    GE        +  K         R     +  S LSPYL       R
Sbjct: 5   HPNTKLMAPTRAAGEATLRAFAPRMGKGYTNGRNHDRGAGKHRDVSMLSPYLR------R 58

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           +           +L     GA  ++ E+IWR +++  M   P V          + +  +
Sbjct: 59  RLVMEQDAVATAVLEHGAEGAEKFIQEVIWRGYFKGWMERRPVVWDQYREGLMRDLMALD 118

Query: 318 KDSHLLQAWKQG---YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           +D  L +  +      TG    D    +L   G++HN  RM  AS  +  L + WR+G +
Sbjct: 119 RDRGLRRRVESAEAYQTGLDYFDNWAEELVETGYLHNHARMWFASIWIFTLELPWRLGAD 178

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDP 420
           +F   LLDGD ASN  GW+W A       PY+ R +N      KRF+P
Sbjct: 179 FFYRHLLDGDPASNTLGWRWVAGLHTRGKPYYARAWNIAKFTDKRFNP 226


>gi|78183829|ref|YP_376263.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168123|gb|ABB25220.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9902]
          Length = 298

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             V  Y   R+      T  LSPY+  GV +  +  + + +      I  +      +NE
Sbjct: 55  MDVKRYARSRNHVNGAVTR-LSPYIRHGVFTLAEVRDAVFQ-----GISKRDDGSKLINE 108

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++ +                T     +    L    + G TG   +D    +L 
Sbjct: 109 LGWRDFWQRMWQDLGDRIDDDQEAFKTGHSAASYSRELPDDVRDGCTGLACMDGFREELV 168

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST     P
Sbjct: 169 STGWLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIAST-FSHKP 227

Query: 405 YFRIFN 410
           YF  FN
Sbjct: 228 YF--FN 231


>gi|297537351|ref|YP_003673120.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
 gi|297256698|gb|ADI28543.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
          Length = 413

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSPYL  G ++  + +  +K  F          A   + EL WR+
Sbjct: 55  YDRNRNFLNGSVT-HLSPYLRHGCVTLNEAYEFIKRRFDA-------SADKLVYELAWRD 106

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ-LNTIGW 348
           ++R +     +        P            +    +QG TG P +D  + + L   G+
Sbjct: 107 YWRQVWFSEGNAIYSDMEPPKVAIGHAPLSEDI----RQGKTGLPCMDGFINEDLFATGY 162

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HN  RM  +S++V    VDWR+  ++F + L+DGD+ASN+  WQW AST   S PYF  
Sbjct: 163 VHNHARMWLSSYIVHHRKVDWRLAADWFEAYLIDGDIASNHLSWQWVAST-FSSKPYF-- 219

Query: 409 FN 410
           FN
Sbjct: 220 FN 221


>gi|149195752|ref|ZP_01872809.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149141214|gb|EDM29610.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 359

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS Y+S G++S R  ++ L +   DL          ++ EL WR++++    ++ +  
Sbjct: 35  SYLSAYISRGIISTRTVYDSLIKRGYDLEKI-----EKFVQELAWRDYWQSQWNYHGAKI 89

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                       +    S              + + A++QL T G++HN +RM  A    
Sbjct: 90  NHDLRHSQMAYNKHGMPS----RLVDEKCSIQVFNTAIKQLKTTGYLHNHMRMYLAMSTC 145

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
                 W     +    L+DGD ASN   WQW A  
Sbjct: 146 NIGGYHWHDPARWMYYHLIDGDWASNALSWQWVAGC 181


>gi|313231151|emb|CBY19149.1| unnamed protein product [Oikopleura dioica]
          Length = 187

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYAS 64
            + L   R DLR+ DN +L  A  +   +++ VF+  PEQ    +    S     F+  S
Sbjct: 20  KIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMCES 78

Query: 65  LLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  + + L  +           N    +E +         + + YN  Y +    RD  +
Sbjct: 79  LNDLGRQLKEEVDGKLHLFMGGN----LETIKKIKEVVNFSAIAYNEDYSVYARERDGEI 134

Query: 124 EKRLQHRVI 132
           E+  +   +
Sbjct: 135 EEWAESNNV 143


>gi|148261327|ref|YP_001235454.1| DNA photolyase domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|146403008|gb|ABQ31535.1| DNA photolyase domain protein [Acidiphilium cryptum JF-5]
          Length = 214

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW + DLR+ D+        ++   V+ + I  PE WR   IS RQ  F+   +  +
Sbjct: 5   VSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDISHRQYAFLAGCIEDL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             +++  G             +IE L++   +     L+ + +       
Sbjct: 63  AAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTH 108


>gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa]
          Length = 448

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 120/397 (30%), Gaps = 18/397 (4%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+  D R+ DN AL  A   +  + + V +A        G  ARQ  F+   L  +Q  L
Sbjct: 1   WMSRDQRVRDNWALIYAAQAAAKRGVPVAVAFSLVTEFLGAGARQFGFMVRGLQLIQPKL 60

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--QHR 130
               I F   +     D  E +         + L  +        +  + + ++L     
Sbjct: 61  EALNIPFFLLK----GDPSETIPKLVQDTGASLLVTDYAPLRLGRQWRQAVAEQLEVPFH 116

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +       V +        A  +           ++   +   ++     ++       
Sbjct: 117 EVDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLKEYPELPQQATWAHEVKPEAVDWE 176

Query: 191 SNIPRFFDYPFQAID-PMFPIGEQNALH-----ILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           + I    +      +      GE  A+                 Y  ++ D       S 
Sbjct: 177 ALIAEVLERGKAVPEVDWCKPGEDAAMEALAGGKGFLSKARLSKYDAQRNDPTVADALSN 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G L+P++      +         +      +      + Y H +  Y S+   
Sbjct: 237 LSPYLHFGHLAPQRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLDAA 296

Query: 305 KPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             +   T     N     +     +++G T   + +AA  ++   G MH  +RM  A  +
Sbjct: 297 YDWARQTLNDHRNDKREHVYTKEQFEKGATHDKLWNAAQLEMVHCGKMHGFMRMYWAKKI 356

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           ++         E          LDG   +   G  W+
Sbjct: 357 LEWTASPEEALEIAIYLNDKYELDGRDPNGYVGCMWS 393


>gi|294669928|ref|ZP_06734951.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308200|gb|EFE49443.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 142

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              +LR+ DN AL+ A    D   +  F+           + RQ  F+  +L +++  L+
Sbjct: 10  FHRNLRLHDNAALHIAAGL-DRPTVGAFVF------PPDCNPRQRVFLRQTLAELRGGLA 62

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
             GI           D+ + L+    +        
Sbjct: 63  ALGIPLHVFT----GDAADALNGLLARYPFAAFVS 93


>gi|254505021|ref|ZP_05117172.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
 gi|222441092|gb|EEE47771.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
          Length = 384

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                R        S LSPY+   ++S ++           L      GA  ++ E+ WR
Sbjct: 8   QRNHDRGSGKHTSVSCLSPYIRRRLISEQEVV------TAALRNHGLDGAEKFIQEVFWR 61

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNT 345
            +++  +   P++          +  +  KDS L QA  +   G TG    DA + +L  
Sbjct: 62  GYFKGWLERRPAIWTSYRQGLTADLEDLKKDSGLRQAVARAEAGQTGIDCFDAWVNELID 121

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            G++HN +RM  AS  +  L + WRIG ++F   LLDGD ASN   W+W A 
Sbjct: 122 TGYLHNHVRMWFASIWIFTLKLPWRIGADFFYRHLLDGDPASNTLSWRWVAG 173


>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 458

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 119/395 (30%), Gaps = 11/395 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+++  RI+ N AL  A   ++     +FI                 F++A L +++ 
Sbjct: 23  VYWMQSAQRISYNHALSYAAERANKLNQPLFIFFLIDKDFPEAEYGHYEFMFAGLKELKN 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +K I F      + D   E + +        K +     +      + +        
Sbjct: 83  RFEEKDINFFIFNYED-DAIFEQIAAKASLFVSEKSYLKNLKKWKAKTANLIKIPFYTVE 141

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                  + V            +          +    +   +   L +P       +  
Sbjct: 142 TNVICPVEEVSEKEEYAAYTIRKKINKIREQYLSDYNEIQPENKTVLKLPEEINKYLIED 201

Query: 191 SNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            +           I     F  G Q A   L +F   K+  Y E+R+IP     S LSPY
Sbjct: 202 LDQYLAEMTFEDKISYKNFFKGGYQAAEQKLNEFLTNKIADYGEKRNIPYFDYQSDLSPY 261

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +S ++    L+        +          EL +   Y +         +   + 
Sbjct: 262 LHFGQISAQEIA--LRALENSKEAEEFLEELIVRRELSFNFVYYNQNYDGSLKDVLPDWA 319

Query: 309 PWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + K           ++   K   T     +AA  ++   G MHN +RM     +++ +
Sbjct: 320 AKSLKKHAADKRDYNYSYEQLKNAETHDQYWNAAQTEMKITGKMHNYMRMYWGKKILEWV 379

Query: 366 LVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397
               +  +          LDG   ++  G  W   
Sbjct: 380 SEPEKAYQYALKLNNKYSLDGRDPNSYAGVAWCFG 414


>gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
 gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
          Length = 378

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 10/190 (5%)

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           Y      D P   G S LSPY+   +L+  +    ++E   D           ++ E+ W
Sbjct: 27  YARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRENHSDADA------EKFIQEVFW 80

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLN 344
           R +++  +   PSV             +    S L  AW     G TG    D   + L 
Sbjct: 81  RTYWKGWLELRPSVWDDYVVERDQAWNDVQTQSGLRTAWEDACLGRTGIECFDHWAQDLA 140

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++HN  RM  AS  +  L + W +G ++F+  LLDGD ASN   W+W A        
Sbjct: 141 ATGYLHNHSRMWFASIWIFTLRLPWSLGADFFLRHLLDGDAASNTLSWRWVAGLQTIGKT 200

Query: 405 YF-RIFNPTI 413
           Y  R  N T 
Sbjct: 201 YLARPDNITK 210


>gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
 gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
          Length = 449

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 129/440 (29%), Gaps = 37/440 (8%)

Query: 11  LVWLRNDLRITDNK---ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN    A       + A +   F   P      G S R   F+   L +
Sbjct: 22  VYWMSRDQRAEDNWALLAAADLARETGAPLHVAFALAP---GYPGASLRHYDFMLRGLAE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + +L  +G+ F          + E+L +      VT     R   + +    +     L
Sbjct: 79  TEAALRARGVPFHLLLGDPAAVAPEFLRAIAAGACVTDFDPMRVKTLWKRAVAEAFAGPL 138

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                       V  P              + P     +Q  ++        P + L   
Sbjct: 139 LEVDAHNVVPCVVASPRRE------YAAATFRPKIHKRLQEFLEPFPELPAFPDVALVAT 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          A     P    G   A   L  F  E++  Y  +R+ P     S 
Sbjct: 193 PPVDWGAARASLSVDAFPGPVPDIVPGPAAARAALDAFTAERLPGYAARRNDPNAGAVSG 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY   G L+P++      E                   L+ RE   +   + P+    
Sbjct: 253 LSPYFHFGQLAPQRA---ALEVLAARAGHVADADAYLEELLVRRELSDNYCHYTPNYDRY 309

Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W  K       +  +  +    ++   +   + +AA R+L   G +H  +RM  A
Sbjct: 310 DALPDWARKTLDAHAGDEREHRYTPAQFEAAASHEALWNAAQRELVATGRIHGYMRMYWA 369

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407
             +++      +  +          LDG   +   G  W+   G    P+         R
Sbjct: 370 KKILEWSPSPRQALDTALSLNDRYALDGRDPNGVVGVLWSVG-GLHDRPWATRPVYGQIR 428

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
             N     ++FD    +I  
Sbjct: 429 YMNERGCRRKFDANA-YIAR 447


>gi|119094174|gb|ABL60996.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           HF10_25F10]
          Length = 254

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 76/189 (40%), Gaps = 9/189 (4%)

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+      T  LSPY+  GVLS  +  N      VD           ++ EL WR++++
Sbjct: 44  SRNHLDGAVTR-LSPYIRHGVLSLDEVRNAALASVVDPKQA-----EKFIQELAWRDYWQ 97

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   +P           T       D+ L      G TG   ID  +  L   G++HN 
Sbjct: 98  RIYLEHPERIWTDVESYKTGFDAAEYDAELPADIAAGETGIACIDQFIATLVETGYLHNH 157

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RM  AS+ V    V W+ G  +F+  L+D D ASNN  WQW AS          IFN  
Sbjct: 158 ARMYLASYTVHWRRVSWQAGARFFLEHLVDADPASNNLSWQWIAS---TFSNKPYIFNLE 214

Query: 413 IQGKRFDPQ 421
              K   P 
Sbjct: 215 NVAKYCGPD 223


>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
          Length = 453

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 120/390 (30%), Gaps = 7/390 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W++   R   N AL  A   ++ + I +F       +    + R  HF+   L Q++ S
Sbjct: 22  YWIQASQRTKYNHALELAIQKANQEQIPLFCFF-GLTKYPAANQRPYHFMLEGLQQLKTS 80

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L+ + I+F   + S  D +I    +   +  +    Y R  +    +    ++ +     
Sbjct: 81  LADRKILFGVAKQSPDDLAISI--AQNAKLLIVDCGYLRIQKQWRKKVADTIDCQFIQVE 138

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                               ++          A   N      +   +P           
Sbjct: 139 TDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQEYDISNITK 198

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
            I         +I   F  GE  A   L +F  +K+  Y + R+ P++  TS LSPYL  
Sbjct: 199 VIDDLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPSLNATSNLSPYLHF 258

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MGKPFIPW 310
           G++SP   +    +       +          EL     Y + +                
Sbjct: 259 GMISPLHIYLEAMKFPPSESRESFLEELIVRRELSMNFCYYNDLYDKYEGLPDWAKNTLQ 318

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
               +     + L   ++  T     ++A  +    G +   +RM     +++      +
Sbjct: 319 EHAKDKRDYIYTLDQLEKAKTHDVYWNSAQLEAIHKGKISGYMRMYWGKKVIEWTESPQQ 378

Query: 371 IGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             E          LDG  A+   G  W   
Sbjct: 379 AFEYLVFLNDKYHLDGRDANGYTGVAWCFG 408


>gi|329133696|gb|AEB78729.1| DNA photolyase [Acinetobacter sp. Ver7]
          Length = 62

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF
Sbjct: 1   HNRVRMIVAIFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIF 60

Query: 410 NP 411
           NP
Sbjct: 61  NP 62


>gi|67906774|gb|AAY82837.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           MedeBAC46A06]
          Length = 287

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  G+LS  +  N       D     K        +   R +  H    +  V 
Sbjct: 86  TRLSPYIRHGILSLDEVRNAALAMVDDPKQAEKFIQELAWRDYWQRLYLAHPEWIWADVE 145

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K     ++         L      G TG   ID  +  L   G++HN  RM  A++ V
Sbjct: 146 SYKTGFDSSDYDP-----DLPDDIAAGETGVACIDQFIATLVETGYLHNHARMYLAAYTV 200

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
               V W+ G  +F+  L+D D ASNN  WQW AS          IFN
Sbjct: 201 HWRRVSWQAGARWFLGHLIDADPASNNLSWQWIAS---TFSNKPYIFN 245


>gi|56752236|ref|YP_172937.1| deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301]
 gi|56687195|dbj|BAD80417.1| similar to deoxyribodipyrimidine photolyase [Synechococcus
           elongatus PCC 6301]
          Length = 305

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS     +R+  +               + EL WR++++ +   +    
Sbjct: 85  TRLSPYIRHGVLSLATVRDRVLAQIRQRSDG-----EKLITELAWRDYWQRIYWEWGDRI 139

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T          L    +   TG   +D   R+L   G++HN  RM  A++LV
Sbjct: 140 WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETGYLHNHARMWMAAYLV 199

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
               + W+ G  +F+  LLDGD ASNN  WQW AST +    +F
Sbjct: 200 HWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVASTFSTKPYWF 243


>gi|81300676|ref|YP_400884.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
 gi|81169557|gb|ABB57897.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
          Length = 293

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS     +R+  +               + EL WR++++ +   +    
Sbjct: 73  TRLSPYIRHGVLSLATVRDRVLAQIRQRSDG-----EKLITELAWRDYWQRIYWEWGDRI 127

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T          L    +   TG   +D   R+L   G++HN  RM  A++LV
Sbjct: 128 WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETGYLHNHARMWMAAYLV 187

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
               + W+ G  +F+  LLDGD ASNN  WQW AST +    +F
Sbjct: 188 HWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVASTFSTKPYWF 231


>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 455

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 134/432 (31%), Gaps = 20/432 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+ +  R   N  L  A   S+     + +  P   +    +AR   F+   +L+ +K
Sbjct: 25  IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKYSNARYYKFMLDGVLEAKK 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+ ++GI F   +    +  +  +    +     K +     ++      +L     +  
Sbjct: 85  SIEERGIKFIIEKSDGIEQRVIEISKNAVALITDKAYLKYYRKLYSDITKQLDIPFYEVE 144

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                  +           +  +            ++              I+     + 
Sbjct: 145 SDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKLEPREPKIKSVNLDFGIKELTLNSS 204

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             I    +         F  G   A   L++F ++K++ Y E R  P +   S LSPYL 
Sbjct: 205 LEILDILNIDKSVSLSPFIGGYSQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLH 264

Query: 251 IGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFI 308
            G +SP +     L E   D  +           EL     Y +     Y  +       
Sbjct: 265 FGQISPIEVALEILSEYKKDENVDSFFNELIAWRELARNFCYYNPSYNHYEGIPDWAKKT 324

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
               K +     + L+ ++   T     +AA  +L   G MHN +RM     +++     
Sbjct: 325 LEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNFMRMYWCKKIIEWTQDP 384

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKR 417
               +          LDG   +   G  W    G    P+         R  + +    +
Sbjct: 385 KHAFDIACYLNDKYELDGRDPNGYAGISW--CFGTHDRPWKERKIFGKVRYMSASGLEAK 442

Query: 418 FDPQGTFIRHWL 429
           FD     I+ ++
Sbjct: 443 FD-----IKKYV 449


>gi|313620255|gb|EFR91705.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 158

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY A    D  +I +F   PEQ+ +   S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++     Q      F + IE L     +     K+F+NR        RD+      
Sbjct: 57  QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111

Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQAD 173
             + I         L     +   A + YK++TP+ K   + + +  
Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMP 158


>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
          Length = 549

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 25/407 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  L  LR  LR   + A   A   ++     +IA+ +  PE          Q  F+   
Sbjct: 18  SYVLYILRC-LRTKYSAAFSFASERANKSQVPLIALHLYVPEHHNVP-----QRVFLLEG 71

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++++S+    +     + ++  D+++     C      ++  +  Y   +   ++ L 
Sbjct: 72  LKELKESMGSLQVKLLCVKANDNKDALKIALQLCE--GACEVVLDAAYLRGDREFEEQLN 129

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQM------YKVYTPFRKALIQNLVQADLRSL- 177
             L  R    +  +  +  P ++ + + +        K++   +  L +      +    
Sbjct: 130 HMLIERCRKLTRIEGNVSVPINLSSKSAEWGARTLRPKIWQHLKAMLAEKWEDVPMIPCG 189

Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                I+   P                 D  F  GE  A  +L  F   K+  Y   R+I
Sbjct: 190 NWAKLIKGNIPEMNLEEELKRAQSDCKSDSGFVGGETVAQRMLSFFISNKLVSYHPGRNI 249

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295
           P  +  S LSPYL  G++S  +   R+K+                   +L     Y    
Sbjct: 250 PGSKYQSLLSPYLHFGMISAIEIIKRVKDAKAPKHAIDSFIEELLVRRDLSHNFVYYAKD 309

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +    C+        ++ + +K  ++  +   +   T  P  +AA  ++     MH  +
Sbjct: 310 NYDSLDCLPDWAQKTLKQHKNDKRDYIYTSEELEDARTHDPYWNAAQLEMVHTNKMHGYM 369

Query: 354 RMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           RM           D    +R   E      LDG   +   G  W   
Sbjct: 370 RMYWGKKVIEWTPDYETAYRFLIEQNDKHELDGRDPNGYTGVMWVFG 416


>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
 gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 444

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 123/381 (32%), Gaps = 29/381 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W++  +R   N AL  A   +++    +I +F  T E       ++R   F+   L  
Sbjct: 23  IYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDEF---PNANSRHYRFLIEGLRD 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +L ++G                   +              +  ++  +         
Sbjct: 80  VGDALMKRGARLVVENERPP-------SAVMRYSDEASAVVVDRGYLDIQKEWVDELAES 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H  + +   + ++    +                + L + +V    R L V ++ L   
Sbjct: 133 LHVPLMQVESNVIVPVETASPKEEYSAGTFRPKITRELERFMVPLKERRLAVDSLDLDPG 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +++   F    +    +F  G   A+ +  +F  EK+  + + R+ P     S +SP
Sbjct: 193 PDLNDVTGKFRASEELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNMSP 252

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP                K           ++ RE   + + +  +    +  
Sbjct: 253 YLHFGHISPLYL--------AMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSIRCL 304

Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             W +K          +       +++  T  P  +AA +++   G MH  +RM     +
Sbjct: 305 PEWAQKTLMEHARDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWGKKI 364

Query: 362 VKDLLVDWRIGEEYFMSQLLD 382
           ++      R  +      L D
Sbjct: 365 LEWTDHPERAYD--IAIYLND 383


>gi|115480339|ref|NP_001063763.1| Os09g0532700 [Oryza sativa Japonica Group]
 gi|52075945|dbj|BAD46025.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
           Japonica Group]
 gi|52077228|dbj|BAD46272.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
           Japonica Group]
 gi|113631996|dbj|BAF25677.1| Os09g0532700 [Oryza sativa Japonica Group]
          Length = 695

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 13  WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           W ++DLR+ D+  L AA        V+ +++         G S      +  +L  ++  
Sbjct: 49  WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILD--GYSDTMLELLLFALEDLKMV 106

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  +             ++ + +     + +   +F   + E         +E  L +  
Sbjct: 107 LKSQESDLLI----GLGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNAS 162

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                   +++   S+ ++        +  +    +  +   L +  +PA+ +
Sbjct: 163 FLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNI 215


>gi|304319762|ref|YP_003853405.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
 gi|303298665|gb|ADM08264.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
          Length = 424

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 15/198 (7%)

Query: 231 VEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
              RD         S LSPYL   +++ ++        F             ++ E+ WR
Sbjct: 48  NRNRDDGPADRRYVSCLSPYLRHRLITEQEVIAAALNRFAFSTA------EKFIQEVYWR 101

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIG 347
            +++  +   P V             E + D     QA  +G TG    DA  ++L   G
Sbjct: 102 TYFKGWLERRPWVWDLYTDDRDRRLNELSGDQATAYQAAVEGRTGIDGFDAWTKELIATG 161

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF- 406
           ++HN  RM  AS  +  L + W +G ++F   LLDGD ASN   W+W          Y  
Sbjct: 162 YLHNHARMWFASIWIFTLRLPWSLGADFFHRHLLDGDAASNTLSWRWVGGLHTKGKTYLA 221

Query: 407 RIFNPTIQGKRFDPQGTF 424
           R  N           G F
Sbjct: 222 RPSNIEKFT-----NGRF 234


>gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV]
 gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV]
          Length = 502

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/412 (14%), Positives = 128/412 (31%), Gaps = 33/412 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A      + + +  V+              RQ  F+   L+ 
Sbjct: 50  VYWMWRDCRVQDNWALIYAQYLAFKTKSPLYIVYCLPKTYLNAT---RRQYQFLIEGLIG 106

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +   +  I F        D +   L  + L+  +  +  +      ++     + + L
Sbjct: 107 LSEECVELDITFVILD----DRADVVLIDWVLKHDICAVITDYNPLQLQMNVVVTVLQNL 162

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     D   ++P  ++ +     Y  +       ++N +      +  P   +   
Sbjct: 163 PAEIYFAQVDAHNVVPGWTLSDTGKFDYDQFKVKINEQLENYLTRFSLVIRHPYKSVVAI 222

Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            + +N    ++                    G   A+  L  F +  +Y Y         
Sbjct: 223 ESSTNTAIDWNQLLSSRSIDHSVKRINWTEAGYDAAILRLASFIQCSLYNYKNCIQDLTS 282

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKSGAFSWLNELIWREF 290
              S LSP+L  G +S ++    L+         ++ +  +   K+      N L  REF
Sbjct: 283 TNQSDLSPFLHFGFISAQRVIYHLRFCITKQSVLQKTISKVKLEKNINRFIENCLYRREF 342

Query: 291 YRHLMAF---YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
             +   +   Y S            K      ++ L+  +   T   + + A   L   G
Sbjct: 343 ADNFCYYNSNYNSFIAPSTQSKLYIKRHIRFFTYGLKELENSQTHDALWNRAQEDLRENG 402

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAA 396
            +H  +R+  A  +++                    +DG   S   G  +A 
Sbjct: 403 KIHPFIRVYWAKKILEWTPTPEEALNRAIYLNQRYAVDGCDPSGYVGCLYAM 454


>gi|149916364|ref|ZP_01904884.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149809818|gb|EDM69670.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 407

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 10/183 (5%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSPYL   +L+  +    +              A  ++ E+ WR +++  +   
Sbjct: 45  HSHVSTLSPYLRHRLLTEDEVLRTVLARHS------PQAAEKFIQEVFWRSYWKGWLEMR 98

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P+V                 +S L Q W     G TG    D    +L   G++HN  RM
Sbjct: 99  PAVWTAYRAGLAAALNRTQVESGLRQRWSDACNGQTGIDGFDHWAHELIQTGYLHNHARM 158

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ 414
             AS  V  L + W +G ++F+  L DGD ASN  GW+W A        Y  R  N    
Sbjct: 159 WFASIWVFTLGLPWELGADFFLRHLHDGDPASNTLGWRWVAGLQTRGKTYLARPDNIARY 218

Query: 415 GKR 417
            +R
Sbjct: 219 TER 221


>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
 gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
           fumaroxidans MPOB]
          Length = 468

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 120/412 (29%), Gaps = 35/412 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQS 58
           +  +  +  L W++   R   N AL  A H +++    ++ VF  T +       + R  
Sbjct: 17  QKRSKGAYVLYWMQQSQRSEFNHALEYAAHRANSLRQPLVVVFGLTGDY---PEANLRHY 73

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +   SL  +GI       S             L       F          +
Sbjct: 74  TFMLEGLEETGASLQARGIKLVVMHASP--------PDAALAAASEASFLVCDRGYMRHQ 125

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                             +   ++P  +  + A    +   P      ++ +     +  
Sbjct: 126 ALWRAAVAAAAPCPVVQVEADAIVPVETASSKAEYAARTLRPRVHTHARSFLTEPAPAEL 185

Query: 179 VPAIRLTGPVTPSNIPR-------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             +                       D    ++   +  G   A  +   F ++ +  Y 
Sbjct: 186 RKSSLDADLNGMDVTDTARVLRKLRADRSVPSVTRYYRGGTSRAKELFETFLRDDIGRYT 245

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E R+ P     S +S YL  G +SP     RL E   +   +  +        L+ RE  
Sbjct: 246 EDRNQPHAGAVSHMSMYLHFGQISPVYLALRLGEVGRERDTQKAAFLEQL---LVRRELA 302

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNT 345
            + +    +    +    W  +          +            T     +AAM ++  
Sbjct: 303 LNFVHHTRNYDSYECLPRWARETLARHRKDRREFRYGRQELENLRTHDEYWNAAMTEMKF 362

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNG-GW 392
            G+MHN +RM     +++         +          LDG D  S  G GW
Sbjct: 363 TGYMHNHMRMYWGKKILEWSETPEEAFQTILALNNKYFLDGRDPNSYAGAGW 414


>gi|302384123|ref|YP_003819946.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194751|gb|ADL02323.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 418

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 67/209 (32%), Gaps = 8/209 (3%)

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
              P     P    G Q     +    +                  S LSP+L   +L+ 
Sbjct: 1   MPEPLDRFPPTRAAGLQRLADFVPHAGEAYAMGRNTDAGPGGHLAVSGLSPWLRHRLLTE 60

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           R+    + E       +       W                  +  +   +    +    
Sbjct: 61  REVVAGVLERHDPRAAQRFIQEVLWRT--------YWKGWLQMNPEVWTRYQAERDAPRA 112

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           +     +   + G TG    D   R+L   G++HN  RM  AS  +  L + W +G ++F
Sbjct: 113 SGLERAVAQAEAGATGIEGFDDWARELVRTGYLHNHARMWFASIWIFTLGLPWALGADFF 172

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +  LLDGD ASN   W+W A        Y
Sbjct: 173 LRHLLDGDPASNTLSWRWVAGLQTVGKTY 201


>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 455

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 134/436 (30%), Gaps = 28/436 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS-HFIYASLL 66
           + W+ +  R   N  L  A   S+     ++  F+ T +       S  +   F+   +L
Sbjct: 25  IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKY----KYSNARYYKFMLDGVL 80

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           + +KS+ ++GI F   +  +    I  +    +     K +     ++      +L    
Sbjct: 81  EAKKSIEERGIKFIIEKSDDIKQRIIEISRSAVALITDKAYLKYYRKLYSDIAKQLDIPF 140

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +         +           +  +            +               I+   
Sbjct: 141 YEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKLAPREPKIKSVNLDFGIKELT 200

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   I    +         F  G   A   L++F ++K++ Y E R  P +   S LS
Sbjct: 201 LNSSLEILDILNIDKSVSLSPFIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLS 260

Query: 247 PYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMG 304
           PYL  G +SP +     L E   D  +           EL     Y +     Y  +   
Sbjct: 261 PYLHFGQISPIEVVLEILSEYKKDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDW 320

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                   K +     + L+ ++   T     +AA  +L   G MHN +RM     +++ 
Sbjct: 321 AKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNYMRMYWCKKIIEW 380

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTI 413
                   +          LDG   +   G  W    G    P+         R  + + 
Sbjct: 381 TQDPKHAFDIACYLNDKYELDGRDPNGYAGISW--CFGTHDRPWKERKIFGKIRYMSASG 438

Query: 414 QGKRFDPQGTFIRHWL 429
              +FD     I+ ++
Sbjct: 439 LEAKFD-----IKKYV 449


>gi|171057934|ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170775379|gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
          Length = 420

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+      T  LSPYL+ G+++  +    + +     +          + EL WRE
Sbjct: 39  YARTRNHLDGAVTG-LSPYLTHGLITLPEVLAGVLQRERLEVRHK------LVFELGWRE 91

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+RH         +           +      L    +Q  TG P+ID A+R L   G +
Sbjct: 92  FFRHAWGHAGDAILQSLHTGPR--PDETCAPVLPADIRQARTGVPVIDEAVRTLYATGTL 149

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           HN  RM  AS++V    V WR G ++ ++ LLDGDLASN+  WQW A TG
Sbjct: 150 HNHARMWLASYVVHLRHVHWRAGADWLVAHLLDGDLASNHLSWQWVAGTG 199


>gi|167825045|ref|ZP_02456516.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9]
          Length = 58

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +  
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW 58


>gi|325285641|ref|YP_004261431.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
 gi|324321095|gb|ADY28560.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
          Length = 372

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 10/166 (6%)

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+      T  LSPY+S GV+S +     +                 ++ EL WR++++
Sbjct: 33  TRNYINGAVT-HLSPYISRGVISTKYILKEVL-----SQGHKPLEIEKFIQELAWRDYWQ 86

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +          +             +  + ++  +  TG   +D A+R+L   G+MHN 
Sbjct: 87  QVWIAKGD----EINTDLKHTQTPVSNIQIPKSIVEANTGIIAVDNAIRKLEQTGYMHNH 142

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           LRM  AS         W +  ++    LLD D ASN   WQW A +
Sbjct: 143 LRMYAASLACNIGQSHWLLPAKWMYYYLLDADWASNALSWQWVAGS 188


>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
 gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
          Length = 476

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 126/418 (30%), Gaps = 19/418 (4%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N AL  A   ++ + + V +           +AR   F+   + +V   L+++GI +   
Sbjct: 53  NPALEYAVEEANGRGLPVLVCYGLAEGIPEANARHWAFLLEGMAEVGPELAKRGIAYVAR 112

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
           +     ++     +        + +             +   + +Q         ++   
Sbjct: 113 RQPPV-ETALLYAADAALVICDRNYLKPVRRFYADFAARAPCRVVQVEGEVVVPVETASP 171

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
                        +   P     ++    A           L     P  +         
Sbjct: 172 KHEVAARTLRPKIRRLLPEYLVPLEERSVAHRADHLSFESTLDLSDVPRLVASLKADQSV 231

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                F  G   A   L  +   +  +Y + R  P     S +SPYL  G +SP      
Sbjct: 232 RPVRRFKGGTTQAEATLSHYLDARFNHYAQIRGRPEAGAASHMSPYLHYGQISP---VAI 288

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EW 316
             +            A      ++ RE   + + + P+    +    W  K       + 
Sbjct: 289 ALKVQAAATGGEDDKAAYLEELIVRRELAMNHIYYEPNYDSYEAAPAWARKTLDAHRGDP 348

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
               +  + +++G T     +AAM ++   G+MHN +RM     +++         E   
Sbjct: 349 RPYLYTPEQFERGETHDRYWNAAMMEMRETGYMHNHMRMYWGKKILEWSASPEEAFETAL 408

Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF-NPTIQG----KRFDPQGTFIR 426
                  +DG  A++     W     +       ++ N    G    K+FD  G ++R
Sbjct: 409 RLNNKYFIDGRDANSFTNVTWLFGLHDRPWGPRPVYGNVRSLGAATLKKFDADG-YVR 465


>gi|118773269|gb|ABL14178.1| cryptochrome 2 [Meleagris gallopavo]
          Length = 144

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +  LP+L   P++YI+ P +  +      K  + ++YP P+V+H +     + +     +
Sbjct: 1   KRLLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQ 60

Query: 480 Q 480
           Q
Sbjct: 61  Q 61


>gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 380

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               TS LSPY++ G+++  +  ++  ++F             ++ E++WR  Y      
Sbjct: 37  NRSNTSCLSPYITHGIINELEVVDKSLKKFSFAKN------EKFIQEVLWR-VYWKGWLE 89

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                     I   +     K++       +G T     +  + +L    ++HN  RM  
Sbjct: 90  LRPNVWSDYLIELGKFKGEFKNNQNYLDAIEGKTNIDCFNEWVIELKENNYLHNHTRMWF 149

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           AS  +  L + W++G E+FM  L DGD ASN  GW+W A        Y
Sbjct: 150 ASIWIFTLELPWQLGAEFFMQHLFDGDAASNTLGWRWVAGVQTQGKHY 197


>gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13]
          Length = 357

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 150/352 (42%), Gaps = 25/352 (7%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK- 105
           S  +  FI  +L  +Q+SL++  I     +        SN  + +E+    C+       
Sbjct: 3   SGWKLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTG 62

Query: 106 --LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
             +  N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K
Sbjct: 63  TIITANIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYK 122

Query: 164 ALI---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--- 217
             +    N  ++      +  I          +  F            P  +        
Sbjct: 123 KWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSE 182

Query: 218 -----ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---- 268
                 L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +       
Sbjct: 183 EAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIM 242

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  
Sbjct: 243 SKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCT 302

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           G TG PI+DA MR+L   G+++NR RMITASFL K L+    +G       L
Sbjct: 303 GNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMGGTLVYETL 354


>gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 408

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
             P    G       + +                     S LSP++   +++  +   R 
Sbjct: 24  FTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRHRLITEEEVLTRA 83

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI---PWTEKIEWNKDS 320
                            ++ E+ WR +++  +  +PSV           +          
Sbjct: 84  LARHSPSAASK------FVQEVFWRGYFKGWLEQHPSVWKAFRHDLRLAYARLENDEVLK 137

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           H      +G +G    D  + +L   G++HN  RM  AS  +  L + W++G ++FM  L
Sbjct: 138 HDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLPWQLGADFFMQHL 197

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGT 423
           LDGD ASN   W+W          Y  R  N     G RF+P+G 
Sbjct: 198 LDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEGQ 242


>gi|167720443|ref|ZP_02403679.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98]
          Length = 108

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IY 62
           ++
Sbjct: 107 LH 108


>gi|220931344|ref|YP_002508252.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
 gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
          Length = 466

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 116/361 (32%), Gaps = 18/361 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N AL  A    + S+  ++  F            + R   F+   L +
Sbjct: 23  LYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTSF---PEANRRHYQFMLEGLQE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLEK 125
           V+KSL  +GI           D ++    Y     V + +    R +  N  ++      
Sbjct: 80  VKKSLYNRGIKMIIESVPPDKDILK-FAEYASLLVVDRGYLKIERTWRNNVSQQIDCPLI 138

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIR 183
           +++  VI      S      +         K+         + +  +  DL+   +    
Sbjct: 139 QVESNVIVPVEVASSKEEYAAYTIRKKLYRKLPEFLHPLHTRTIRVSSLDLKLSFINYKD 198

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +        + R           ++  G   AL +   F   K+  Y E R+ P     S
Sbjct: 199 IPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALYNDFLHNKIKDYHEYRNDPVKNWIS 258

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPYL  G +SP     +         I        +   +I RE   + + + P    
Sbjct: 259 NMSPYLHFGQVSPLHLIIKGNNYCKKHEIDKGF-KEFFEELVIRRELSFNFVYYNPDYDS 317

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            K    W +K     ++   +            T  P  +AA ++L   G +H  +RM  
Sbjct: 318 IKSLPDWAKKTLKEHENDTREFSYSLQELEDAKTHDPYWNAAQKELLLTGKIHGYMRMYW 377

Query: 358 A 358
            
Sbjct: 378 G 378


>gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
 gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
          Length = 458

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 130/398 (32%), Gaps = 18/398 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++  +RI  N AL  A   ++ K + + +           + R   F+   L ++Q+
Sbjct: 23  LYWMQQSMRIQYNHALNYAIELANKKKLPLIVWFNILPNYPEANLRHYTFMLEGLKELQQ 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
              ++ I F+       ++   +LD      + +   K     + E+ ++ +D       
Sbjct: 83  DFVKENIHFELSIGKLTENIKPYLDDVDTIIMDRGYLKPQRQMRNEVYKIVKDTHAIDII 142

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +++  +I            G+ +     M K+        +  L   +   +  P     
Sbjct: 143 QVETDLIIPVEVLYPKAAYGAYVIRPKVMEKLPQYMDYRELSRLDNIEKTKVYEPLDLSN 202

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 N+P                G +   +   ++   ++    ++R  PA+   S +
Sbjct: 203 IDEVVKNLP----IDMSVKPYHKFKGGRKEAYKHLEYFFNQLLKDYDKRSDPALHIQSYM 258

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G +S ++    L +     +    S  F     +     Y  +           
Sbjct: 259 SMYLQFGQVSDQEILRMLYDHPFYKIYPEMSEGFIEQLVVRRSLAYNFVTYIKDYDVFEF 318

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               W  +  +  +  L              T     +AAM++    G+M N LRM  A 
Sbjct: 319 MTESWAYETMYEHERDLRTHIYSLEDIEFSKTHDIHFNAAMKEARITGFMANYLRMYWAK 378

Query: 360 FLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            +++    +   ++I         +DG   ++ G   W
Sbjct: 379 KIMEWSGSMKDAYQIIVYLNNKYFIDGRNPNSYGNIAW 416


>gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
 gi|99035484|gb|ABF62342.1| Deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
          Length = 410

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK--- 313
           R+     +     L       A  ++ E++WR +++  M   P V          +    
Sbjct: 56  RRLLTEPEVIAAALAAHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVAL 115

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            E    +  + A + G TG    D   ++L   G++HN  RM  AS  +  L + WR+G 
Sbjct: 116 EEDPGLAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGA 175

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           ++F+  LLDGD ASN   W+W A       PY 
Sbjct: 176 DFFLRHLLDGDPASNTCSWRWVAGLHTRGKPYV 208


>gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
 gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
          Length = 412

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +   SQLSP+L  G+LS R+       E              ++ E+ WR +++  +  
Sbjct: 40  MLSNVSQLSPWLHAGLLSEREVILAALNEHGPGKA------EKFIAEVFWRVYFKGYLEQ 93

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLR 354
            PSV            I    +S L + +++   G TG    D  +R+L   G++HN  R
Sbjct: 94  RPSVWDAYKQGRDGALIAVENNSGLAKVYEEAVAGRTGIEAFDQWVRELVQTGYLHNHAR 153

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTI 413
           M  AS  +  L +DW++G ++F+  L+DGD ASN   W+W A        Y  R  N   
Sbjct: 154 MWFASVWIFTLKLDWQLGADFFLRHLMDGDAASNTLSWRWVAGLHTKGKNYAARASNIKR 213

Query: 414 QGKRFD 419
             +R D
Sbjct: 214 YTERRD 219


>gi|254442576|ref|ZP_05056052.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
 gi|198256884|gb|EDY81192.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
          Length = 423

 Score = 73.3 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 12/190 (6%)

Query: 230 YVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           Y   R+           SQLSPY+  G++S  +    + +               +L E+
Sbjct: 39  YRANRNHDGGAGQHVYVSQLSPYIRNGLISEEEVVATILKSHTFAEA------EKFLQEV 92

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR +++  +   P +           K +        +A     TG    D   ++L  
Sbjct: 93  FWRVYWKGYLENRPVLWTRYREDLEILKNKAADYQDYPRA-DSASTGIKCFDTWSQELQE 151

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++HN  RM  AS  +  L + W++G ++F+  LLDGD ASN   W+W A        Y
Sbjct: 152 TGYLHNHTRMWFASIWIFTLKLPWQLGADFFLRHLLDGDPASNTLSWRWVAGLHTKGKNY 211

Query: 406 F-RIFNPTIQ 414
             R  N    
Sbjct: 212 LARSSNIAKF 221


>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
 gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
          Length = 498

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 70/464 (15%), Positives = 140/464 (30%), Gaps = 50/464 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + V +         G +AR   F+   L  V++
Sbjct: 22  LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L ++GI     +    +  +       L          ++                   
Sbjct: 82  ALQRRGIAMIIRRIPPVEGVVALARRAALVVTDRGYLRYQRQWREAAAARIDCPFIQVES 141

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---------PA 181
            +    + +             ++ ++   F   L +         +           P 
Sbjct: 142 DVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEALLDEALPGEPV 201

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +     S +         +    +  G + A   L  F  +K++ Y E +  P++ G
Sbjct: 202 FADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYHEDKKDPSLDG 261

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------------------AFS 280
            S+LSP+L  G +SP +   + ++     L    +G                     A  
Sbjct: 262 LSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVGPSPNPGLAAF 321

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFP 334
               ++ RE   +   + P+         W +    +      +        +   T   
Sbjct: 322 LEELIVRRELAMNFAYYNPAYDQFAALPAWAQATLHSHRLDSREFNYTKAELENACTHDR 381

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGG 391
             +AA  +L   G MH  +RM     +++        +RI  E   +  LDG   +   G
Sbjct: 382 YWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDTYALDGRDPNGYTG 441

Query: 392 WQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQGTFIRH 427
             W    G    P+         R  N     ++FD +  ++R 
Sbjct: 442 IAW--CFGKHDRPWGERAIFGKVRYMNAAGLRRKFDIEA-YVRK 482


>gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299]
 gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299]
          Length = 478

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 114/425 (26%), Gaps = 49/425 (11%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A          +  VF   PE        ARQ  F+   L +
Sbjct: 20  VYWMSRDQRAMDNWALCHALAVAREHRRPLHVVFALVPEFAN---AGARQYCFMLRGLRE 76

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L   GI F   Q  +   S+    +   +   + L  +             +   L
Sbjct: 77  LESRLRDLGIPFHLAQGPDPGVSV---PAAAERLGCSMLVTDFSPLRIGRAWRDSVTTLL 133

Query: 128 QHRVICKSFDDSVL--------------------------LPPGSILNHALQMYKVYTPF 161
               +  +  D+                                +       + +  T  
Sbjct: 134 CPVDVPVAEVDAHNVVPAWVASEKQEYAARTIRKKINGRLTDFLTDFPTVEDVREAATEA 193

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                ++ V++         I          +P                    AL     
Sbjct: 194 AAGAEKHPVRSAGSIDWDGLIDAARAGAGGAVPEVLSPSPPRSRAPGETAALAALFGTSA 253

Query: 222 FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
                       R+ P +    S LSPYL  G LS ++C     E        P++    
Sbjct: 254 SFLPNRLALYGSRNDPNVPEALSGLSPYLHFGQLSAQRC---AVEATKHRAKHPEAVDSF 310

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFP 334
               ++ RE   +     P          W  +      S   +            T   
Sbjct: 311 LEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALHASDAREFAYTLEELEHSRTHDE 370

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS----QLLDGDLASNNG 390
           + +AA ++L  +G MH  LRM  A  +++             +       LDG   +   
Sbjct: 371 LWNAAQKELTHLGTMHGFLRMYWAKKILEWTGEGPEEALRRAIYLNDRYQLDGRDPNGYV 430

Query: 391 GWQWA 395
           G  WA
Sbjct: 431 GCMWA 435


>gi|167739437|ref|ZP_02412211.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14]
          Length = 53

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++    
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDER 45


>gi|148259631|ref|YP_001233758.1| deoxyribodipyrimidine photolyase-like protein [Acidiphilium cryptum
           JF-5]
 gi|146401312|gb|ABQ29839.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 396

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
             G TG    D+  R++    ++HN  RM  AS  +  L + W +G ++F+  LLDGD+A
Sbjct: 127 CAGQTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIA 186

Query: 387 SNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQG 422
           SN   W+W A        Y  R  N     G RFDP+G
Sbjct: 187 SNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 224


>gi|255607778|ref|XP_002538784.1| DNA photolyase, putative [Ricinus communis]
 gi|223510429|gb|EEF23599.1| DNA photolyase, putative [Ricinus communis]
          Length = 351

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L E   D+  +    A     EL +R+++R +   +    M     P     +      +
Sbjct: 91  LPETMADVGARFGKHAHKLAAELSYRDYFRQVWYRFGEAIMQPMESPKVGLGDRPMPDFI 150

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                QG+TG   +D  +RQL   G++HN  RM  A+++V  L VDWR   ++F +QLLD
Sbjct: 151 ----AQGFTGLVCMDEIVRQLQQHGYVHNHARMWFAAYVVHWLKVDWRQAADWFETQLLD 206

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           GD ASN+  WQW AS+ ++    F   N    G
Sbjct: 207 GDTASNHLSWQWIASSFSNKPYLFNKENLIKFG 239


>gi|83859814|ref|ZP_00953334.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852173|gb|EAP90027.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
          Length = 414

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 5/169 (2%)

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC---MGKPFIPWTEKI 314
           +     +     L       A  ++ E+ WR +++  +    +V      +    +T   
Sbjct: 61  RLVQEAELAQAALSAHGLQAAEKFIQEVCWRTYWKGWLELRSAVWADYKAEREQAFTAVS 120

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           E    +   +A  +G TG    DA   +L   G++HN  RM  AS  +  L + W +G +
Sbjct: 121 EDQALAQRYEAAIEGRTGLEGFDAWATELMQTGYLHNHARMWFASIWIFTLDLPWVLGAD 180

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQ 421
           +F+  L+DGD ASN   W+W          Y  R  N     K RF P 
Sbjct: 181 HFLRHLIDGDAASNTLSWRWVGGLQTVGKTYLARASNIEKYTKGRFAPD 229


>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium knowlesi strain H]
 gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium knowlesi strain H]
          Length = 923

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 133/415 (32%), Gaps = 32/415 (7%)

Query: 16  NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY---ASLLQVQ 69
            D R+ DN AL  A          +IA      ++   +        FI+     L  ++
Sbjct: 449 RDFRVNDNWALIYAYEMAKKKGLTLIACTCLNRKEKVTN-------RFIHTKLKILKNLE 501

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +  I F        D+       +    +V  +  +     +E    K L      
Sbjct: 502 YSLKKINIPFYMLPLYMIDE----FGEFMKTHQVKIITCDLHVLNDEKAFIKSLSHLCNK 557

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGP 187
           R +     D   ++P            +   P  +AL+   L++       V  ++   P
Sbjct: 558 RKVKMFQVDSHNIVPMWVTSKMEECSVRTIKPKIQALLPTFLIEYMSIEPFVQNLKFPEP 617

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +           + P F + E+ A  +L+ FC + +  Y  +R+ P     S L 
Sbjct: 618 FDIDEVLNKLSVSNTCAVVPNFVLTEKKAEELLKDFCSKVLDKYNVKRNDPNSDAGSVLL 677

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMG 304
           PY+++G++S ++C   + +   +             ++  ++ +E   +   +  +    
Sbjct: 678 PYVNLGIISSQRCVLEVHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNF 737

Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W          +  +  +  + ++   T   + +    QL   G MH  L++  A
Sbjct: 738 EGGRDWAKESLKKHDADKREYLYDYEDFRSAKTHNDMWNCCQLQLINEGIMHEFLKVYWA 797

Query: 359 SFLVKDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQW-AASTGNDSVPYFRIF 409
             ++          +          +DG   +      W      + S     IF
Sbjct: 798 KKILNWSGNSQTALKYALQLNNELSIDGKTPNGYVSIMWSIMGVHDQSWNEKNIF 852


>gi|213428165|ref|ZP_03360915.1| hypothetical protein SentesTyphi_22875 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
          Length = 45

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTP 39


>gi|326403400|ref|YP_004283481.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
 gi|325050261|dbj|BAJ80599.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
          Length = 393

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
             G TG    D+  R++    ++HN  RM  AS  +  L + W +G ++F+  LLDGD+A
Sbjct: 124 CAGRTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIA 183

Query: 387 SNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQG 422
           SN   W+W A        Y  R  N     G RFDP+G
Sbjct: 184 SNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 221


>gi|114765681|ref|ZP_01444780.1| DNA photolyase-like protein [Pelagibaca bermudensis HTCC2601]
 gi|114542003|gb|EAU45037.1| DNA photolyase-like protein [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEK 313
           R+     +     +      GA ++++E++WR +++  +   P V               
Sbjct: 51  RRLVTEPEVISTAVETHGIDGAGTFVSEVLWRSYFKGWLEQRPQVWNDYRDGLRRDLAAL 110

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            E       +     G TG   +D    +L   G++HN  RM  AS  +    + WR+G 
Sbjct: 111 DEDADLRDRVARVCAGRTGLAGVDDWAAELVQTGYLHNHARMWFASIWIFTRGLPWRLGA 170

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           ++F+  LLDGD ASN   W+W A        Y
Sbjct: 171 DFFLRHLLDGDPASNTCSWRWVAGLHTRGKHY 202


>gi|213584005|ref|ZP_03365831.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 46

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHD 46


>gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC
           30864]
          Length = 634

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/464 (13%), Positives = 121/464 (26%), Gaps = 62/464 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN AL  A   +    + +   F   P          RQ  F+   L +
Sbjct: 131 LYWMSRDQRVQDNWALIYAQQLAIQHRVPLFVGFCLVPHFLDAT---IRQYDFMMEGLRE 187

Query: 68  VQKSLSQKGIVFQYHQCSNFD------------------DSIEWLDSYCLQQRVTKLFYN 109
           V+ +L    I F     +  +                    +  +  +  +   +     
Sbjct: 188 VETALRGLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELANSLAQTT 247

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP-----------------GSILNHAL 152
                       +   +L    +   +  S  L                         A 
Sbjct: 248 IATTGATQSHTGIPLIQLDAHNVVPCWHASPKLEYAARTIRPKLHKLLSEFLTEFPEVAA 307

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                              A   +    +         +              P    G 
Sbjct: 308 HPCSARQSPSSPQSARASSAASSNAHFQSGLSAPVDWDAARASLQVNRTITAVPDIVPGT 367

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           +  +  LR F ++++ Y+   R+ P  +  S LSPY   G ++P++              
Sbjct: 368 RAGMTTLRTFVEQRMRYFGAVRNDPNERVLSNLSPYFHFGQIAPQRAILVAYAAHARCRE 427

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---- 328
                       L+ RE   +   + P+         W ++          +        
Sbjct: 428 SVDVFVEE---ALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAHAGDAREFVYTEEEL 484

Query: 329 --GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYFMSQL-LDG 383
               T   + +AA  ++   G MH  +RM  A  +++             +   +  LDG
Sbjct: 485 ESATTHDLLWNAAQLEMVREGKMHGFMRMYWAKKILEWTASPSEALRIAIHLNDKYNLDG 544

Query: 384 DLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFD 419
              +   G  W+   G     +         R  N     ++FD
Sbjct: 545 RDPNGYVGCMWSI-CGIHDQGWGERPIFGKIRFMNLKGCQRKFD 587


>gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
 gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
          Length = 297

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 86/293 (29%), Gaps = 5/293 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W+  D R+ DN AL  AC  +  +   V IA     +  G  ARQ  F+   L +++  
Sbjct: 2   YWMSRDQRVDDNWALLRACDLARERGAPVVIAFNLLTKYLGAGARQFGFMLRGLRELEAK 61

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                  F          +I+ L      + +   F   +  +   +   +L ++    V
Sbjct: 62  ARAAKATFAMTYGDEPAAAIDALAKKIGAKTIVCDFSPLRDGVRWRKDLAVLSEKRGAHV 121

Query: 132 ICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 + V     S                     ++         +      +     
Sbjct: 122 EECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLKEFPAIPDDLVEYDGPAIDAVKW 181

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPY 248
              +           +  + I  + A   +            E+R+ P+     S LSP+
Sbjct: 182 DDLLAEALKRGEAVPEVTWAIPGETAARAVLDDFVANRMKLYEKRNDPSKPRALSGLSPW 241

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           L  G +S ++C    K+             F  L  ++ RE   +   + P  
Sbjct: 242 LHFGQISAQRCALEAKKAVGKASPAAYDSFFEEL--VVRRELADNFCYYCPGQ 292


>gi|315500507|ref|YP_004089309.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315418519|gb|ADU15158.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 390

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPY+   ++   +     ++       K       +++E+ WR ++R  +   P+
Sbjct: 41  HVSKLSPYVRHRLIGEWELARAAEKAHGAAASK-------FIDEVCWRSYWRGYLEMRPA 93

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +         +++ E  + +    A   G TG    D    +L T G++HN  RM  AS 
Sbjct: 94  LWASYVDYLLSDEAETARQTDTYCAAVSGQTGIDAFDVWTAELITTGYLHNHARMSFASI 153

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            V  L + W++G  +F+  LLDGD A+N   W+W A 
Sbjct: 154 WVHTLRLPWQLGAAFFLEHLLDGDEAANTLSWRWVAG 190


>gi|170782720|ref|YP_001711054.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157290|emb|CAQ02475.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 408

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 230 YVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           Y   R+     +    S LSPYL   +++ ++    +                 ++ E+ 
Sbjct: 24  YARDRNHDLGASRDNVSGLSPYLRHRLVTEQEVVAAVLARHSLSAA------EKFVQEVF 77

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR +++  +   P     + +    E++              G +G   +DA +R+L   
Sbjct: 78  WRTYWKGWLEQNPEA--WRRYRRDVEELTAGDLPTGYLDAVGGRSGIDAMDAWVRELVET 135

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           G++HN  RM  AS  +  L + W++G ++F   LLDGD ASN   W+W A        Y
Sbjct: 136 GYLHNHTRMWFASIWIFTLGLPWQLGADFFHRHLLDGDAASNTLSWRWVAGLQTRGKTY 194


>gi|71083003|ref|YP_265722.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062116|gb|AAZ21119.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 380

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
             N L+     L     +    ++ E++W  +++  +   P V      I   +  +  K
Sbjct: 52  IINELEVINKSLKKFSFANNEKFIQEVLWHVYWKGWLELRPDVW-SDYLIELDKIKKEFK 110

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           ++       +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM 
Sbjct: 111 NNQSYLDATEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQ 170

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPY 405
            L DGD ASN  GW+W A        Y
Sbjct: 171 HLYDGDAASNTLGWRWVAGIQTQGKHY 197


>gi|323193108|gb|EFZ78328.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
          Length = 45

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45


>gi|304391892|ref|ZP_07373834.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
 gi|303296121|gb|EFL90479.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
          Length = 408

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 13/208 (6%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260
           +  FP   QNAL     F  E    Y   R+I          S+LSPY+   +++ ++  
Sbjct: 4   NNFFPATRQNALKQAENFAPEMGSNYSSNRNIDRGLEGDSTVSKLSPYIRRRLMTEQELA 63

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
               E               ++ E++WR +++  +   P+V          E+   + ++
Sbjct: 64  LLALETHGAKASGK------FVQEIVWRTYWKGWLEHRPTVWNDYLQDVADERDRLSSNT 117

Query: 321 HLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            +  A++   +G TG    D   ++L    ++HN  RM  AS  V  L + W +G E+F 
Sbjct: 118 GIHHAYQQAIEGRTGIECFDVWAQELVETNYLHNHARMSFASIWVHTLRLPWSLGAEFFF 177

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405
             LLDGD ASN   W+W A        Y
Sbjct: 178 HHLLDGDAASNTLSWRWVAGAHTAGKTY 205


>gi|254440134|ref|ZP_05053628.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
 gi|198255580|gb|EDY79894.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
          Length = 384

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK--- 313
           R+     +     L       A  ++ E+IWR +++  +   P V          +    
Sbjct: 30  RRLLTEAEVVAAALTTHGPDDARVFIEEVIWRGYFKGWLERRPQVWDSYALGLNADLVSL 89

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
               +    L+  + G TG    D   ++L   G++HN  RM  AS  +  L + WR+G 
Sbjct: 90  NRDRRLRRDLELAETGQTGMDYFDTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGA 149

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           ++F   LLDGD A+N   W+WAA       PY
Sbjct: 150 DFFYRHLLDGDAAANTLNWRWAAGLHTRGKPY 181


>gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii]
          Length = 181

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + A HN    V+ V+   P  + +           ++ F+  S+  ++K+L  +G     
Sbjct: 5   FNAAHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGSDLVV 64

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
                       L           ++ +
Sbjct: 65  R----IGKPETVLVELAKAVGAEAVYAH 88


>gi|225425190|ref|XP_002264876.1| PREDICTED: similar to predicted protein [Vitis vinifera]
          Length = 467

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           Q   +DP+G ++RHWLPEL  VPT++IH P    
Sbjct: 104 QSSNYDPEGEYVRHWLPELARVPTEWIHHPWDAP 137


>gi|289622018|emb|CBI51196.1| unnamed protein product [Sordaria macrospora]
          Length = 178

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 27/171 (15%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGI---------- 53
            V +  LR DLR++DN   +   +    +  + +I V++    Q    G           
Sbjct: 5   KVVIYVLRRDLRLSDNPIFHHLANPDSNHGFSHLIPVYVFPAPQIDLSGFLPEGGEIPRP 64

Query: 54  ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-CLQ 100
                          ++ F+  S+  ++ SL   G        +        +D     +
Sbjct: 65  APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSNGSDLLVRVGTYTGAVKSLVDGLKAKE 124

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             V  ++        E   +K +     +  I     D         +   
Sbjct: 125 CPVGAVWMTSHEGSEEKNDEKAVASFCANSGIDFKLWDDEKYFIHEQVLQN 175


>gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica]
          Length = 72

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
             G W W +S+  + +     +  P    KR DP GT+I+ ++PEL  VP  +IH P   
Sbjct: 2   CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEPWRM 61

Query: 447 LDKND 451
             K  
Sbjct: 62  PLKEQ 66


>gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 508

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 123/398 (30%), Gaps = 22/398 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLLQVQ 69
           L W+  D R+ DN AL  A   +  + + +         +    + R   F+   L +V 
Sbjct: 75  LYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLRHYSFLLKGLEEVA 134

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
                 GI F   +      + + L  +  +Q++  +  +       +   + ++K+L  
Sbjct: 135 AECKALGIQFHLLRGP----AGDLLPGFVSEQQLGAVVTDFSPLREPLTWLEDVKKKLPK 190

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188
            V     D   ++P            +         + + L    L      A   T   
Sbjct: 191 DVPLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKHPHAATRTAKP 250

Query: 189 TPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                        + +        G    L +L  F   ++  +  QR+ P     SQLS
Sbjct: 251 VDWRELLSSLGVDRTVGETEWARPGAAAGLAMLESFIDVRLKRFDSQRNDPNAAALSQLS 310

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P++  G +S ++   +++     L +   S        ++ RE   +   +       + 
Sbjct: 311 PWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEEL---VVRRELTDNFCFYNEKYDSVEG 367

Query: 307 FIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W  K   +                +  T   + +AA  Q+   G MH  LRM  A  
Sbjct: 368 AYEWARKTLKDHAKDKRPYIYTREQLEKAETHDKLWNAA--QVVREGKMHGFLRMYWAKK 425

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395
           +++                    LDG   +   G  W+
Sbjct: 426 ILEWTPSPEEALASALYLNDRYELDGQDPNGFVGCMWS 463


>gi|327342150|gb|AEA50862.1| cry2-1 [Populus tremula]
          Length = 84

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 8  SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
          S  +VW R DLRI DN AL  A    D  V  VFI  P++  Q         ++  S   
Sbjct: 4  SKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQS--- 57

Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
               +  G   +         +    +  
Sbjct: 58 ----FAHSGQSLEISCIETIGATTVAFNHL 83


>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
          Length = 308

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 7/184 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P GE  AL  L +  + K +    +R            + LSPY   G LS R  + +L
Sbjct: 126 WPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFYFKL 185

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            + +  +         S   +L+WREF+       P     +   P   +I W+++   L
Sbjct: 186 TDLYRKVKKNSSPPL-SLYGQLLWREFFYTAATNNPCFDKMES-NPICVQIPWDRNPEAL 243

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD
Sbjct: 244 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 303

Query: 383 GDLA 386
            D +
Sbjct: 304 ADWS 307


>gi|254437730|ref|ZP_05051224.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
 gi|198253176|gb|EDY77490.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
          Length = 408

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE---K 313
           R+           L       A  ++ E+IWR +++  +   P V          +    
Sbjct: 54  RRLVLEQDAVAAALAAHGPVDAEKFVQEVIWRGYFKGWLERRPQVWASYVTELEADLSAL 113

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
               +    +     G TG    DA   +L   G++HN  RM  AS  +  L + WR+G 
Sbjct: 114 DRDRRLRRDVDRAMNGQTGIECFDARAMELVDTGYLHNHARMWFASIWIFTLGLPWRLGA 173

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           ++F   LLDGD ASN  GW+WAA       PY
Sbjct: 174 DFFYRHLLDGDAASNTLGWRWAAGLHTRGKPY 205


>gi|294053665|ref|YP_003547323.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612998|gb|ADE53153.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 399

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 7/163 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP++   +L      + + E               W         Y           
Sbjct: 41  SRLSPWIRTRMLPEWYVISAVLERHSASAASKYIDEVCWR-------TYWKGWLQLRPSI 93

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +   + ++   D         G TG    DA  ++L     +HN  RM  AS  V
Sbjct: 94  WKDYLLARNDLLDQYADHPDYNNAISGQTGIDCFDAWAKELTETNQLHNHARMWYASIWV 153

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             L + W++G ++F+  LLDGD ASN   W+W          Y
Sbjct: 154 HSLKLPWQLGADWFLRHLLDGDPASNTLSWRWVTGLHTRGKSY 196


>gi|123966755|ref|YP_001011836.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
 gi|123201121|gb|ABM72729.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
          Length = 378

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPY+S  +L   +    +K+++    I        W   + W+ +  +    +    
Sbjct: 39  SKLSPYVSHRILLEYELIEEVKKKYQSQKINKFIEEIYW--RIYWKGWMENRPNVWVDFI 96

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F           D    +    G T     ++ + +L T  ++HN  RM  AS  +
Sbjct: 97  SEKNFK---------YDFEAYEKAINGDTDLSFFNSWVNELKTHNYLHNHTRMWFASTWI 147

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            +  + W +G  +F   L DGD ASN   W+W A        Y   F+P
Sbjct: 148 FNFGLPWELGANFFFKHLYDGDSASNILSWRWVAGLQTKGKQYL--FSP 194


>gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
 gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
          Length = 480

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 134/436 (30%), Gaps = 36/436 (8%)

Query: 22  DNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           DN AL  A          ++ V+          G   RQ  F    L  + K+L  KGI 
Sbjct: 9   DNWALLYAQNLALEGKQPLLVVYNLA---IGYLGGGLRQHVFKVGGLRVLAKNLRDKGIS 65

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---------QH 129
           F+     +F  ++  + +      V   F   +             +RL          +
Sbjct: 66  FRVDYSKDFPKALSKMVTMLGCSHVVTDFTPLKVNKAWEDAFIKEAERLGIRFDQVDAHN 125

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V C    D +     +I     + +  Y+     L ++    D     + +      + 
Sbjct: 126 IVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITSEACFDMLL 185

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGTSQLSPY 248
             N  +        + P+  +       +   +   K      Q R+ P     S LSPY
Sbjct: 186 SDNEQQLLAGLDHGVKPVTKVLPGEDAGLEHLYTFIKNMKGYSQFRNDPTKNAISDLSPY 245

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
              G++SP++    + +      I             I RE   +   +  +    + F 
Sbjct: 246 FHYGMVSPQRAVMEVAKA---KSIPKPDRDAFIEEAFIRRELADNFCYYNENYDRFEGFH 302

Query: 309 PWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            W +K   + ++   +         +  T   + +A   Q+   G MH  LRM     ++
Sbjct: 303 NWAQKTLQDHEADKRKYVYSLSQLEKASTHDELWNACQNQMLKSGKMHGYLRMYWGKKIL 362

Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQG--- 415
           +      +  +          LDG   +   G  W+    +D     R IF         
Sbjct: 363 EWTENPRQALKFAIYLNDKYELDGRDPNGYVGCAWSIGGIHDQGWAERPIFGKIRYMTYD 422

Query: 416 ---KRFDPQGTFIRHW 428
              ++FD Q  +I  W
Sbjct: 423 GCKRKFDIQ-KYINKW 437


>gi|84516926|ref|ZP_01004284.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
 gi|84509394|gb|EAQ05853.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
          Length = 400

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 9/175 (5%)

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R+   I   S LSPY+   +++       +              A  ++ E+ WR +++ 
Sbjct: 28  RNHDDIAHVSALSPYIRHRIITEADVLRAVLARHS------PQAAEKFVQEVFWRTYWKG 81

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMH 350
            +   P+V             +    + L   W     G TG    D   RQL   G++H
Sbjct: 82  WLELRPTVWANYQRDLAAAMNQIQTQAGLRAQWETACLGQTGIDGFDHWARQLADTGYLH 141

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           N  RM  AS  +  L + W +G ++F+  LLDGD ASN   W+W          Y
Sbjct: 142 NHARMWFASIWIHTLKLPWVLGADFFLRHLLDGDAASNTLSWRWVGGIQTQGKAY 196


>gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana]
          Length = 546

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 73/492 (14%), Positives = 132/492 (26%), Gaps = 76/492 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A   +      +   F             AR   F+   L  
Sbjct: 42  VYWMSRDQRSRDNWALLYAAQCAQQQGGPLCVAFNLVDSFL---HAEARHFGFMLRGLRV 98

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +LS  GI F   +      + E + ++  +   + L  +           + + K +
Sbjct: 99  VHHNLSSLGIPFFLLR----GKAEENIPAFVERCGASILVMDFSPLRIGRVWREGVCKAV 154

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTG 186
              V     D   ++P     +      +      +  + + LV+      P+    L  
Sbjct: 155 PSSVSVFEVDAHNVVPVWVASDKQEYAARTIRGKIQRHLPEYLVEYPPLVAPIHTWTLEK 214

Query: 187 PVTPSNIP---------------------------------------RFFDYPFQAIDPM 207
           P                                              R  +Y     DP 
Sbjct: 215 PANIDWDLLIDEVAKKGAEGLEVKWCESREDAAMELLLGKKKGFLTTRIRNYADDRNDPS 274

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCW--N 261
            P G       L      K   ++  R        +  S    +  LSP     Q     
Sbjct: 275 KPAGLSGLSPYLHYGQVLKKKGFLTTRIRNYADDRNDPSKPAGLSGLSPYLHYGQVLAQR 334

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
              E         K+        +I RE   +   + P+    +    W         S 
Sbjct: 335 CALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYDSLQGAYEWARSTLLAHASD 394

Query: 322 LLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
             +         +G T   + +A+  ++  +G MH  +RM  A  +++            
Sbjct: 395 KREHLYTQEELEKGKTHDELWNASQLEMVHLGKMHGFMRMYWAKKILEWTGGPEEALAVA 454

Query: 376 FM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQG-- 422
                   LDG   +   G  W+   G     +         R  N     ++F+  G  
Sbjct: 455 IYLNDKYELDGRDPNGYVGCMWSI-CGIHDQGWQERPVFGKIRYMNYNGCKRKFNVDGYI 513

Query: 423 TFIRHWLPELNN 434
            +++  + EL  
Sbjct: 514 QYVKRMVAELKR 525


>gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus]
          Length = 367

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 105/360 (29%), Gaps = 16/360 (4%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           A    +  +   F   P          R  +F+   L +V + L    I F         
Sbjct: 2   ALKQ-EVPLHVCFCLVPRFLEGT---IRHFNFVLEGLKEVSQELHLLDIPFHLL----IG 53

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            + + L  +     +  +  +        +  K +++ L   +     D   ++P     
Sbjct: 54  YAKDVLPGFINDHGLGGVVTDFSPLRTSRQWIKDVKEELPKNIPFCQVDAHNVVPCWEAS 113

Query: 149 NHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP- 206
           N      +   P     +   L +           +                  Q + P 
Sbjct: 114 NKLEYGARTIRPKITKQLTTYLTEFPPVICHPHKAKAKAEPIDWEGAYASLEVDQTVKPV 173

Query: 207 -MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
                G    + +L  F KE++ Y+   R+ P     S LSP++  G LS ++    ++ 
Sbjct: 174 DWAQPGTSEGMKMLDSFVKERLRYFSSARNDPTKSVCSNLSPWIHFGQLSSQRAALIVRL 233

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                           +      + +      Y S+     +   T K         + +
Sbjct: 234 YRSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDHAKDKREYVYS 293

Query: 326 W---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
               ++  T   + ++A +Q+   G MH  LRM  A  +++         E      L D
Sbjct: 294 RETLERAKTHDQLWNSAQKQMVREGKMHGFLRMYWAKKILEWTTSPEEALE--IAIYLND 351


>gi|254456085|ref|ZP_05069514.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083087|gb|EDZ60513.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 379

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPY++ G++S  +  ++  ++F             ++ E++WR +++  +   P+V 
Sbjct: 42  SCLSPYITHGIISELEVIDKSLKKFSFTKN------EKFIQEVLWRVYWKGWLELRPNVW 95

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                     + E+    + L A  +G T     +  + +L    ++HN  RM  AS  +
Sbjct: 96  SDFLMELNNLRNEFKDKQNYLDA-IEGKTDLECFNQWVNELKENNYLHNHTRMWFASIWI 154

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             L + W++G E+FM  L DGD ASN  GW+W A        Y
Sbjct: 155 FTLELPWQLGAEFFMKHLYDGDAASNTLGWRWVAGIQTQGKHY 197


>gi|310658527|ref|YP_003936248.1| deoxyribodipyrimidine photo-lyase [Clostridium sticklandii DSM 519]
 gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Clostridium sticklandii]
          Length = 447

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/399 (14%), Positives = 118/399 (29%), Gaps = 22/399 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  +   S+   + + +           + R   F+   +  V  
Sbjct: 22  LYWMQASQRSEYNHALEYSIEYSNKLKLPLIVLFIIMEDFPKANFRHFRFMLEGIEDVMN 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRLQH 129
            L  + I     +     +++  ++       +    F   ++EI               
Sbjct: 82  QLKSRKIKMVIRK----GEALPIVNELSKNASILITDFGYLKHEIIMKSNIAQQLNCSML 137

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V         +              K+     K LI+   +  ++S     I+      
Sbjct: 138 SVESNVIIPVEVTSNKEEYGAYTIRPKINKIIDKYLIELNSRLVMQSSIDYPIKSEDISD 197

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            ++            + ++  G   A   L+ F + K  YY E ++ P +  +S LSPYL
Sbjct: 198 LNSFIDSLKIDKSINESIYKGGSVEAEKYLKDFIENKAQYYSELKNHPGMNYSSNLSPYL 257

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +SP     ++ +  +                +  RE   + + +  +       I 
Sbjct: 258 HFGQISPLYIALKIIKSDIKSKK------DFLEELITRRELAINYIYYNKNYDSDIEKIL 311

Query: 310 WTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +   +                   +   T     + A +++   G MH  +RM     +
Sbjct: 312 PSWAYDSLISHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMVITGKMHGYMRMYWGKKI 371

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           ++  L       +         +DG  A+   G  W   
Sbjct: 372 IEWSLTINDAFSKALYLNDRYSIDGRDANGYAGIAWCYG 410


>gi|307108702|gb|EFN56941.1| hypothetical protein CHLNCDRAFT_143484 [Chlorella variabilis]
          Length = 798

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 18/140 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK--------------VIAVFIATPEQWRQHGISAR 56
           L+W + DLR+ D+   +AA   + A               V+ VF   P ++    +   
Sbjct: 33  LLWYKRDLRLDDHPGWHAAAAAAAAAAAAAADAAAGAPRGVVPVFCFDPARYAHLVLPRG 92

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            +  +  +L  + +SL Q G               E L     +     +   ++ E + 
Sbjct: 93  GAEALCRALASLDRSLRQHGSRLVVR----VGAWEEQLPLLAAELGAAGVVAEQEVEADW 148

Query: 117 VRRDKLLEKRLQHRVICKSF 136
            +  + +   L   V    +
Sbjct: 149 RQGVERVAAALPGGVAVHHW 168


>gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
 gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
          Length = 407

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 10/214 (4%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
            +P    G         +                     S LSP++   +++  +   + 
Sbjct: 10  FEPTRSAGIVRMEQFAIRTGAHYASKRNYDLGANNRSTVSALSPWIRHRLITEEEVLTQT 69

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
              +             ++ E+ WR +++  +  +PSV         T +   + ++ L 
Sbjct: 70  LARYSPSTAMK------FIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAELN 123

Query: 324 QAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +    +G TG    D   R+L   G++HN  RM  AS  +  L + W +G ++F++ L
Sbjct: 124 ADYIGAIEGRTGIACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNHL 183

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413
           +DGD ASN   W+W          Y  R  N   
Sbjct: 184 IDGDSASNTLSWRWVGGLHTKGKTYLARQDNIAK 217


>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
          Length = 166

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPYL  G LS R  + RL + +  +         S   +L+WREF+       P  
Sbjct: 16  PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 74

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 75  DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 133

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
            + DL V W  G   F   LLD D + N G W 
Sbjct: 134 TRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166


>gi|146337586|ref|YP_001202634.1| putative deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
 gi|146190392|emb|CAL74388.1| putative Deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
          Length = 406

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 14/172 (8%)

Query: 233 QRDIPAIQGTSQ----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            R+     G  Q    LSP++   +++  +            +      A  ++ E+IWR
Sbjct: 31  GRNHDHGPGRPQAVSGLSPWIRRRLVTEEEVVRA-------AVAAHGGAADKFVEEVIWR 83

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345
            +++  +   P V          +    + D      + A + G TG    DA  ++L  
Sbjct: 84  GYFKGWLERRPQVWTSYLRGRDADLERLDSDGALQARVAAAEAGRTGLACFDAFAQELVA 143

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            G +HN  RM  AS  +  L + WR+G ++F+  LLDGD ASN  GW+W A 
Sbjct: 144 TGMLHNHARMWFASLWIFTLGLPWRLGADFFLRHLLDGDPASNTLGWRWVAG 195


>gi|258611843|ref|ZP_05711678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
 gi|258606567|gb|EEW19175.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
          Length = 164

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+     S     F +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQGF-FASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
             + I         L     +  +   Y         + + 
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTLIIKMARR 152


>gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites]
 gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii]
          Length = 174

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
                     L           ++ +R+   
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSH 87


>gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides]
          Length = 173

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
                     L           ++ +R+   
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSH 87


>gi|254449813|ref|ZP_05063250.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198264219|gb|EDY88489.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 405

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S LSPY+   +L  R+                   A +++ E++WR +++  +  
Sbjct: 38  QHTAVSVLSPYICRRLLCEREVVAAALAVHG------PDDARAFIEEVVWRGYFKGWLER 91

Query: 298 YPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P V          +        +    ++  + G +G    D    +L   G++HN  R
Sbjct: 92  RPQVWASYVSGLNADLESLKRDRQLRRDVELAETGQSGLGYFDTWAHELVNTGYLHNHAR 151

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           M  AS  +  L + WR+G ++F   LLDGD A+N   W+WAA       PY
Sbjct: 152 MWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPY 202


>gi|82548258|gb|ABB82949.1| putative DNA deoxyribodipyrimidine photolyase [uncultured organism
           HF70_19B12]
          Length = 738

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 117/418 (27%), Gaps = 29/418 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R  LR+ +N     A   +    + + I      R    S R   F+      V  
Sbjct: 28  IHWMRAALRLDENPTFDVARTIAKNLSLPLLIYQGIDERYPYASYRHHRFLIEGAADVAH 87

Query: 71  SLSQKGIV--FQYHQCSNFDDSIEWLDS----YCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             +Q G+       +  + + +++++                + N    +  +R    ++
Sbjct: 88  RANQIGVKYLLHVSRDGHREPNLQYIAQEAAVVVTDLVDLSPWSNWTESVARIRPVIEVD 147

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---A 181
                                      ++                          P   +
Sbjct: 148 AHCVLPRPVFGRTFDRPFRFRDATKREMKRRMAQPWPSTNHEITSFPDTWTPPFTPVDAS 207

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           + L      S +      P          G   A+     F  E +  Y   R+  A + 
Sbjct: 208 LELRKDGAQSLLAACQIDPTVVPVTDMIGGASVAMTRWNNFLSEGLSRYHRTRNNAAKRG 267

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S +SP+L  G+++  +                          L++RE   H      +
Sbjct: 268 GVSGMSPWLHHGMIAATRLVRDAANSPTKGA------QKFLDEMLVFREHAYHHAHEVDN 321

Query: 301 VCMGKPFIPW-TEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               +    W  E  +          W   ++G T  P+ +AA   +   G MHN +RM 
Sbjct: 322 PLEWRHLPGWARESWQNTCLVKYPLLWMDLERGNTDDPLWNAAQTGIVRHGVMHNNVRMT 381

Query: 357 TASFLVKDLLVDWRI---GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
                V+ +          +E      LDG   ++  G  W          + R F+P
Sbjct: 382 WGKGTVRWVDDPEEAMSFTQELNDRYALDGRNPNSIAGVMWCYGL------FDRPFDP 433


>gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 511

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 117/373 (31%), Gaps = 25/373 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIA-----------TPEQ---WRQHGI 53
           + W++ D+R  DN AL  A       D  +  V+               +      Q  +
Sbjct: 23  VYWMQRDVRSVDNWALLWARDLAMQHDVPLHVVYALPPPASSDGSDNDRDLPPALIQLPM 82

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQY 112
           + R   F+   L  V K L +  I        + +   E   ++   + +   +  +   
Sbjct: 83  TKRHGAFLLGGLECVYKELKEMKIPLYVCLPDSHEKVGETVCEAILHKYKAKIVVSDFSP 142

Query: 113 EINEVRRD--KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
                +    + +    + +V     D   ++P  +  +      +   P    +  + +
Sbjct: 143 IREYRQWMELQAVPILEEAKVPFYQVDAHNIVPVWTATDKRQVGARTLRPRIHKVYNDYL 202

Query: 171 Q--ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           Q   DL+       +              D   +++D   P  E                
Sbjct: 203 QDYPDLKGNSHSVDQPKFDRVEYESFLQMDESVESVDWAQPGTEAGMKQFEFFSKNGLKI 262

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           ++ ++ D       S +SP+++ G +S ++    +K                 +   +  
Sbjct: 263 FHEQRNDPVQKHVCSDMSPWINHGHISFQRLALNVKALNKHANGAAAFIEEGVIRRELSD 322

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNT 345
               +    Y S+     +   + ++  + +   + +    ++G T   + +AA  Q+  
Sbjct: 323 NMLYYSPNDYDSLETAAGWARESLQLHASDEREFVYSLSELEEGRTHDDLWNAAQLQMVR 382

Query: 346 IGWMHNRLRMITA 358
            G MH  +RM  A
Sbjct: 383 DGKMHGFMRMYWA 395


>gi|330814279|ref|YP_004358518.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487374|gb|AEA81779.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 382

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           +  +  +         P      ++ E+ WR +++  +   P V     +    + +   
Sbjct: 48  RIIDEQETIRSAYSKLPFKKIEKFVQEVFWRTYWKGWLEMRPQV--WDDYNHDLKNLHNE 105

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
             S   +   +G T    ++  + +L   G++HN  RM  AS  +  L + W++G  +F+
Sbjct: 106 LTSSNYKEAIEGNTKISCLNDWVLELKEFGYLHNHARMWFASIWIFTLGLPWQLGANFFL 165

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405
             LLDGD ASN  GW+W A        Y
Sbjct: 166 KHLLDGDPASNTLGWRWVAGLHTKGKHY 193


>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 452

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 149/427 (34%), Gaps = 35/427 (8%)

Query: 14  LRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           LR D     N +L  A   ++      +++ FI      +    + R   F+   +L+ +
Sbjct: 29  LREDF----NFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTK 80

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K++ ++GI F   +    + +++                 ++     + +   +      
Sbjct: 81  KAIEERGIKFVIQKDDYVNGTLKLSKEAVCIVLDKNYLKTQRKWRENIAKASQVAVYQLE 140

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +          P      +  ++ KV   F K + +  ++ + + L V ++    P  
Sbjct: 141 NDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFKTPDE 200

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +I          +D  F  G   A   L++F ++K+Y Y E R  P+   TS LSPYL
Sbjct: 201 FLSILNIDKT-VSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNLSPYL 259

Query: 250 SIGVLSPRQCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MGKP 306
             G +SP +    + + +   D  +           EL     + + +            
Sbjct: 260 HFGQISPLKIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCWYNPLYNQYEGIPQWAR 319

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                 K +     + LQ +++  T  P  +AA ++L   G +HN +RM  A  +++   
Sbjct: 320 QTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWAKKIIEWTE 379

Query: 367 VDWRIGEEYFMSQLLD------GDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412
              +  +      L D       D  +  GG  W    G    P+         R  N  
Sbjct: 380 DPKQAFD--IACYLNDKYALDGRDP-NGYGGISW--CFGTFDRPWQERKVFGKIRYMNDK 434

Query: 413 IQGKRFD 419
              ++FD
Sbjct: 435 GLERKFD 441


>gi|124026272|ref|YP_001015388.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
 gi|123961340|gb|ABM76123.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
          Length = 371

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 5/170 (2%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                    +    ++  +S       L E  +   +K       + +E++WR +++  +
Sbjct: 23  HQLRNYDYGIEDRTNVSQISKYTSHRILYEFDIIEKLKKYDKKQKYTDEILWRIYWKGYL 82

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y S+        +    E + +S+L+ +   G TG    D  + +L    ++HN  RM
Sbjct: 83  ENYKSIWF-----EYINFKENSNNSYLISSAINGKTGIDCFDTWIEELRENNYLHNHARM 137

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             AS  +  L + W++G   FM  LLDGD ASN   W+W A    +  PY
Sbjct: 138 WFASIWIFTLGLPWQLGARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187


>gi|126696885|ref|YP_001091771.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
 gi|126543928|gb|ABO18170.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
          Length = 382

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
            +    F K K+  Y + R+            +LSP+++  +LS  +  + +K ++    
Sbjct: 8   QNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYELIHDIKSKYKIKN 67

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                            E +  +          K +  +  +   + D  L ++   G T
Sbjct: 68  STKF-----------VEEIFWRVYWKGWMENRPKVWRNFISENNLDFDYELYESAINGNT 116

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
                ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +SN   
Sbjct: 117 ELDYFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLLS 176

Query: 392 WQWAASTGNDSVPY 405
           W+W          Y
Sbjct: 177 WRWVGGLQTKGKQY 190


>gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
 gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
          Length = 418

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 11/234 (4%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
              D   +A  P    G +          +                  S LSP++   ++
Sbjct: 10  DHIDKFNEAFIPTREAGLKRLKEFAPLAGEIYSNKRNFDFSSIEKNSVSALSPWIKHRLI 69

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWT 311
                    +     L    +  A  ++ E+ WR +++  +  +P+V           + 
Sbjct: 70  ------TEEEVIIEILKYHNQHSAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYA 123

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
           +            +   G TG    D    QL + G++HN +RM  AS  V  L +   +
Sbjct: 124 KLENNRFVKESYMSAVNGETGIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMEL 183

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTIQGK-RFDPQGT 423
           G ++FM  L+D D ASN   W+W +        Y  R  N       +F+P G 
Sbjct: 184 GADFFMLHLIDADAASNTLSWRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQ 237


>gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
 gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
          Length = 426

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 121/424 (28%), Gaps = 28/424 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W+  D R+ DN AL  A   +    + +++      +    + R   F+   L +V+K 
Sbjct: 16  YWMSRDQRVQDNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGFMLKGLEEVEK- 74

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                        S       +L  +  ++ +  +  +       ++    L  +L   V
Sbjct: 75  -----------FPSPDWLCCGFLPGFVDEKNIGGVVTDFSPLRTPLKWVHDLAGKLPSDV 123

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                D   ++P            +         + + +         P      P    
Sbjct: 124 PFVQVDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPPKDKPEPTD 183

Query: 192 NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                                 G    L +L  FCK+++  +   R+ P  +  S LSP+
Sbjct: 184 WAAARASLKVDMTVAEVTWATPGTTGGLRMLESFCKQRLKNFGTDRNNPNKRALSNLSPW 243

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM----G 304
           +  G +S ++C   +K+          +     +      + +                 
Sbjct: 244 IHFGQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFYNHDKYDSIKGASAW 303

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     +  +  +  +  +Q  T   + +AA   L+      N L +    + +  
Sbjct: 304 AQKTLKDHAGDKREYLYSREQLEQAKTHDDLWNAAQV-LDINFSCANLLSIWEVQYSIDK 362

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             +D R    Y            ++ GW   A         F  +N     ++FD    F
Sbjct: 363 YSLDGRDPNGYVGCMW--SICGIHDQGW---AERPVFGKIRFMNYNGCK--RKFD-VAQF 414

Query: 425 IRHW 428
           +  +
Sbjct: 415 VTKY 418


>gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii]
          Length = 173

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
                     L           ++ +R+   
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSH 87


>gi|162606050|ref|XP_001713540.1| hypothetical protein GTHECHR1043 [Guillardia theta]
 gi|13794460|gb|AAK39835.1|AF165818_43 hypothetical protein [Guillardia theta]
          Length = 272

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLRI DNK L      ++     V+     + +    S ++  F+  S+  ++ 
Sbjct: 68  ILWFRYDLRINDNK-LIELLKTNNNDYYLVYCFDKNEIK--NYSKKKLTFLKQSVETLRD 124

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
           +L +        +     DSI    +   +  +TK+ Y+
Sbjct: 125 NLRKLEYNLMIME----GDSISVFKNLKEKFLITKISYS 159


>gi|218198693|gb|EEC81120.1| hypothetical protein OsI_23997 [Oryza sativa Indica Group]
          Length = 133

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +    +P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D AS
Sbjct: 64  EDEARYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPAS 123

Query: 388 NNGGWQWAAS 397
           N G W + A 
Sbjct: 124 NYGNWTYGAG 133


>gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
           DSM 2926]
 gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
           DSM 2926]
          Length = 459

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/440 (14%), Positives = 132/440 (30%), Gaps = 28/440 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N  L      ++     +I +F            + R   F+   L  
Sbjct: 21  LYWMQGSQRTRYNHCLEYGVLKANEMKKPLIVIFNL---IDGYPDANERHYSFMLEGLKD 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K+L  + I F         + ++            K + N Q +       K+  + +
Sbjct: 78  VKKALFARKIEFYISHGDMAKNIVKA-SEKASILICDKGYMNIQKKWRAEISSKVKCQAV 136

Query: 128 QHRV----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +         +           +I     +    +    + +  ++ ++  +        
Sbjct: 137 EIDTNLVVPVEEASQKEEYAARTIREKIKRQLDEFLYDFEKIKYSVNKSYNKKFCFYENN 196

Query: 184 LTGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           L   +                +    F  GE  A   L +F + K+  Y  +   P    
Sbjct: 197 LNKDLDNVGKVLDNMKLNRSVSKSSFFYGGEIEAEKRLDEFIEIKLESYSYKNSDPGEDN 256

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFY 298
            S+LSPYL  G +SP +    L +   +   +             EL     Y +     
Sbjct: 257 VSKLSPYLHFGNISPVEIALELLKMKNETNSESIEAFLEELIIRRELSHNFIYYNERYDK 316

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                        EK   +K  ++   +  ++  T     +AA +++   G+MH  +RM 
Sbjct: 317 WDGISYSWAYETLEKHRSDKRENIYSLEKLEKYKTHDIYWNAAQKEMVVTGFMHGYMRMY 376

Query: 357 TASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYFR 407
               +++         E          LDG   ++  G  W     + +          R
Sbjct: 377 WCKKILEWSKTPEEAYERTIYLNNKYFLDGRDPNSYTGVAWCFGKHDRAWKERSIFGKIR 436

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
             N     ++FD    +++ 
Sbjct: 437 YMNSEGLKRKFDMD-KYVKK 455


>gi|15636683|gb|AAL02137.1| deoxyribodipyrimidine photo-lyase [Branchiostoma belcheri]
          Length = 202

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A          +   F   P+       S R   F+   L +
Sbjct: 122 VYWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLE---ASIRHYGFMLKGLEE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFD 88
           V++ L    I F        D
Sbjct: 179 VERELQSLDISFHLLTGYAVD 199


>gi|212543459|ref|XP_002151884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210066791|gb|EEA20884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 452

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L W + DLR+ DN+AL  A   +  +  V                   +  F   +L  +
Sbjct: 328 LHWFKGDLRLKDNRALTMASELAAKNNIVRC---------------PARVDFTLRNLKVL 372

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           Q+ L    I           +    +   C +   + LF N +Y
Sbjct: 373 QQKLDNLDIPLYMETQEQRRNVPGRIAELCERWGASHLFANIEY 416


>gi|85374772|ref|YP_458834.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
 gi|84787855|gb|ABC64037.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
          Length = 407

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P     SQLSP+L  G+L   +       E              + NE+ WR +++  
Sbjct: 33  DGPGRGNVSQLSPWLHTGLLREHEVLEATLREHGARAA------EKFGNEIFWRVYFKGY 86

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   PS+         T     ++++    A+    +G TG    D   ++L   G++HN
Sbjct: 87  LEQRPSIWRSYCQQRDTALTALDRNAGDRTAYEEATEGRTGIGAFDYWAQELIETGYLHN 146

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
             RM  AS  +  L +DW +G ++F+  L+DGD ASN   W+W   
Sbjct: 147 HARMWFASIWIFTLKLDWTLGADFFLRHLVDGDAASNTLSWRWVGG 192


>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
 gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
          Length = 464

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 106/358 (29%), Gaps = 21/358 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R  D+  L AA   +      +  +F  +P          R   F+   L +
Sbjct: 32  LYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFLGAP---LRAYAFLLRGLRE 88

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L+ + I     +     D  E    + ++ RV     +           +   +R 
Sbjct: 89  TARELAARDIPLFLLR----GDPPEEAARFAIRHRVALTVTDFDPLRVRRGWTEAFLERT 144

Query: 128 QHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +     + V     S     +    +             +   L + PVP      
Sbjct: 145 EGTALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFLPFLPPPLETHPVPWTDTPP 204

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P                 +   P G       L  F +E +  Y   R+ P  +G S LS
Sbjct: 205 PSWDPLDLLASGSFEGVPESPLPPGSAAGQARLEAFLREGLPRYARDRNDPLREGQSGLS 264

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G +SP++    +         +        +      E   +     P     + 
Sbjct: 265 PYLHFGQISPQRAAWEVLRADAPPEDREAFLEELVVRG----ELAENFCLHTPGYDTVEA 320

Query: 307 FIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           F  W  K      S    A        +G T  P+ +AA R+L   G M   LRM   
Sbjct: 321 FPDWARKTLAAHASDRRPALYSLRELEEGRTHDPLWNAAQRELVLTGRMPGYLRMYWG 378


>gi|89055300|ref|YP_510751.1| deoxyribodipyrimidine photo-lyase family protein [Jannaschia sp.
           CCS1]
 gi|88864849|gb|ABD55726.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 403

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%)

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                +   + +         +   + D   +   + G T     +A  R+L   G++HN
Sbjct: 81  CWRTYWKGWLELRPSAWAEYRRDLDHIDRTGVAKAEAGQTDIDAFNAWTRELVETGYLHN 140

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
             RM  AS  +  L + W+ G ++FM  LLDGD ASN   W+W A        Y 
Sbjct: 141 HARMWFASIWIFTLGLPWQAGADFFMRHLLDGDPASNTLSWRWVAGLQTHGKHYV 195


>gi|72382567|ref|YP_291922.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
 gi|72002417|gb|AAZ58219.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
          Length = 371

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%)

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
              +  Q         +      +        +    E    +            +  + 
Sbjct: 34  NRTNVSQISKYTSHRILYEFDIIEKLKKYDKKQKYTDEILWRIYWKGYLENYKSIWFEYI 93

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              E + +S+L+ +   G TG    D  + +L    ++HN  RM  AS  +  L + W++
Sbjct: 94  NFKENSNNSYLISSAMNGKTGIDCFDTWIEELKENNYLHNHARMWFASIWIFTLGLPWQL 153

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           G   FM  LLDGD ASN   W+W A    +  PY
Sbjct: 154 GARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187


>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 726

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 13/169 (7%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWR------QHGISARQSHFIYASLLQVQKSLSQKGIVF 79
           L+     +   ++ ++   P  +              +  F+  S+  ++K+L  +G   
Sbjct: 543 LFYWAQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNL 602

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN---EVRRDKLLEKRLQHRVICKSF 136
              +        E + S   Q         ++   +    V +            +   +
Sbjct: 603 IVRR----GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCW 658

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             ++        +H  ++  VYT FRKA+        +   P     L 
Sbjct: 659 GSTLYHRDDLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLP 707


>gi|147827517|emb|CAN66342.1| hypothetical protein VITISV_024326 [Vitis vinifera]
          Length = 1716

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 8    SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            SV ++W ++DLRI D+  L AA       VI +++       + G    +  F   
Sbjct: 954  SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSRDGK---RVKFWKD 1005


>gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 487

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 115/412 (27%), Gaps = 36/412 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++  LR  DN  + AA    +   + V +    +      S R  HFI  +   +Q+
Sbjct: 30  LCWIQQTLRSDDNPLIDAAIDLGNRLGLPVLVYHGLREDYPHASDRLHHFILRASRDLQR 89

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              ++G        +  D +         +   T        +   V R +      +  
Sbjct: 90  ECVRRG----LRCVTFVDQAQTREKGLVYRLAATAAAVLTDDQPVFVARQQADNFAARCD 145

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR------- 183
               + D + L+P   +                   Q  V  +      PA         
Sbjct: 146 RAVFAVDTARLVPTRVLPAGLKTTPAFRKASGALRPQYEVHRNNFVPDCPAYTGDVCFKD 205

Query: 184 ------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     +         D+         P        +          Y   + +  
Sbjct: 206 ANLAQASNTALNDLMAHCDIDHSLPPAPDFEPSAAAARSALDGFVTDALATYPYRRNNAA 265

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              G S+LSPYL  GVL PR+    ++   V    K K         L WRE++ +L   
Sbjct: 266 DKAGVSRLSPYLHFGVLGPRKMTAAVRAADVTANAKWKYLDEL----LTWREYFHYLAYQ 321

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHN 351
             +    +              S              G TG    +AA RQ    G+MHN
Sbjct: 322 DDNFASFRSLPDAPRTSLEAHSSDPRPTLYALTDLVHGNTGDETWNAAQRQWLATGYMHN 381

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD------GDLASNNGGWQWAAS 397
            LRM     ++K                L D       D A+  G  +W   
Sbjct: 382 NLRMYWGKQIIKWT--PDPETAWDTACYLNDRLALDGRDPAT-YGNMKWVFG 430


>gi|254527101|ref|ZP_05139153.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221538525|gb|EEE40978.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 384

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%)

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E +  +          K +  +  +   N D  L +    G T     ++ + +L    +
Sbjct: 74  EIFWRVYWKGWMENRPKVWENFISEKNLNFDYELYKKAINGNTEIDFFNSWVLELKQHNY 133

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +HN  RM  AS  + +L + W++G ++F   L DGD ASN   W+W          Y
Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLSWRWVGGLQTKGKQY 190


>gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 444

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 68/433 (15%), Positives = 132/433 (30%), Gaps = 37/433 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R+  N +L  A     + D  +  + +     +     + R   F    +L+
Sbjct: 21  LYWMQGAFRVEYNHSLEFAKYLALSKDLPLKVLVVVD---FNYKDANYRHFKFFIDGILE 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +        I F            E +  Y                + +VR +   +  +
Sbjct: 78  LIDKFKDLKISFHV----KIGSFKEIVPQYSKNADTLITDKAYIKWLKDVRNEIYNKNDI 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +  +    V          A  +       ++  + + V  D +        +   
Sbjct: 134 TIYEVDTNLMVPVQAASPKCEYGAYTIRPKIHKLKEKFLNDFVVFDYKGRSYE---VEND 190

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +   NI              F  GE  A  +LR F  EK  ++ E+R  P++   S LS 
Sbjct: 191 LNGLNIDDKLKSVHYLKPVDFIGGESKADKLLRDFLNEKYLFFAEKRGDPSLDVESNLSF 250

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP +      +   D           +   ++ RE   +   +  ++     F
Sbjct: 251 YLHFGFISPIKILKEAIKIDTDPKNY----ETLFEQLVVRRELAHNFTYYCDNISDLFSF 306

Query: 308 IPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +P        +    ++ +       +   T     +AA  +L   G +HN +RM     
Sbjct: 307 LPNWAVKTVIEHKDDIRKYLYKLEDLENFKTHDKFWNAAQYELIHKGKIHNYMRMYWGKK 366

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF-------- 409
           +++         +          LDG   +   G  W     + +    +IF        
Sbjct: 367 VIEWTESFEDAYKILIYLNDKYALDGRDPNGYAGIAWCFGMHDRAFQERKIFGKVRYMSE 426

Query: 410 NPTIQGKRFDPQG 422
           N   Q  +FD  G
Sbjct: 427 NGLKQ--KFDMDG 437


>gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 431

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 128/399 (32%), Gaps = 19/399 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W+++  R + N+AL  AC  ++     V+AVF      +   G  AR   F+Y  L +
Sbjct: 5   LLWVQSAQRASHNEALELACARANVHGVPVVAVF-GGTAGFPGGGSGARHLRFMYEGLCE 63

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ +L++ +G+          D  I                   +    +V         
Sbjct: 64  LEDALARTRGVRLLGFAGEVPDVVIAASRRAVEVVTDAGYTRTLRRWREKVAGGVQCATT 123

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                +                  A    K++        +      L      A     
Sbjct: 124 EVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALAASGAEEALE 183

Query: 187 PVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V  +     F   P          GE  A   L  F   ++  Y  +R+ P +   S L
Sbjct: 184 LVGGAAAMAAFPRLPVPPCPGYHAGGEAEAHRKLEVFLSRRLDDYASKRNDPGLGLQSHL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP++  G +S      R  E         +S        +I RE   + +   P      
Sbjct: 244 SPHIHYGQISVVYVTRRALEVKRRDPRHARSVDVFLDELVIRRELAINFVLNNPKYDSYD 303

Query: 306 PFIPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               W      +      + W       ++G T   + +AA R+L T G  HN +RM  A
Sbjct: 304 GLPRWARITLADHAGD-ARRWSYTREEFERGLTHDALWNAAQRELLTSGKQHNYVRMYWA 362

Query: 359 SFLVKDLL---VDWRIGEEYFMSQLLDG-DLASNNG-GW 392
             +++        WR+  E      LDG D +S  G GW
Sbjct: 363 KKILEWSEDPAEAWRVAIELNNKYSLDGRDPSSYTGVGW 401


>gi|33861916|ref|NP_893477.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640284|emb|CAE19819.1| similar to DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 379

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%)

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E Y  +          K +  +  +  +  D    +    G +     ++ + +L T  +
Sbjct: 74  EIYWRIYWQGWMENRPKVWCNFISENNYEYDIETYEKAINGNSELGFFNSWVNELKTYNY 133

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +HN  RM  AS  + +L + W++G  +F   L DGD ASN   W+W A        Y
Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGASFFFKHLYDGDAASNLLSWRWVAGLQTKGKQY 190


>gi|78779842|ref|YP_397954.1| deoxyribodipyrimidine photo-lyase family protein [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713341|gb|ABB50518.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Prochlorococcus marinus str. MIT 9312]
          Length = 384

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
            ++   F K K+  Y + R+            +LSP+++  +LS     N +K ++    
Sbjct: 8   QNVWDNFAKYKINDYSKLRNFDFGPNNEGSVSKLSPFITHRILSEYDLINDIKSKYKIKN 67

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                    ++ E+ WR +++  M   P V          +      D  L +    G T
Sbjct: 68  S------TKFVEEIFWRVYWKGWMENRPKVWQYFTLEKNLDF-----DYELYENAISGNT 116

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
                ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN   
Sbjct: 117 ELDFFNSWVLELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLS 176

Query: 392 WQWAASTGNDSVPY 405
           W+W A        Y
Sbjct: 177 WRWVAGLQTKGKRY 190


>gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis]
 gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis]
          Length = 667

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 130/413 (31%), Gaps = 36/413 (8%)

Query: 11  LVWLRNDLRITDNKAL---YAACHNSDAKV-IAVFIATPEQWRQHGISARQSHFIYASLL 66
           L W++  +R  +N AL    AA       + IA F+   +   Q  I+ R+  F+   L 
Sbjct: 226 LYWMKTAVRGHENPALDTARAAAERLQLPLRIAAFV---QPTCQPYINHRRVKFLLEGLR 282

Query: 67  QVQKSLSQKGIVFQYH----QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             Q+ L  +G+    H     C+      E       +    +   N             
Sbjct: 283 DAQRELRNQGLDLLVHVYGTTCAGLGPGDEVRSDGSGRGGCPEYDNNDDGGGGGQGGLGR 342

Query: 123 L------EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           +       + L   ++ +++D +      +      ++  +Y        Q       R+
Sbjct: 343 VEVSGPGWEALLAALVGRAYDKAHAYRSATEALRRHRLRAMYGTSAFPSAQMSPSPPQRT 402

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               A       TP       +    A         +       +       + V++   
Sbjct: 403 SRAAAPGPAPADTPRGRLFLKEDEAAAAAAAHTNKFKQGGSCPIRVYANVQMWSVQR--- 459

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
               GTS++SPYL  G++SP +   R   +                    L+WRE     
Sbjct: 460 ---SGTSRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKFLDELLVWRELSYSF 516

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGW 348
             +  S       +P   +      +   +  K       G TG P  DAA  QL++ G 
Sbjct: 517 CFYRYSQLQSLSVLPRWAQDTLAAHATDPRVVKTLQQLELGATGDPFWDAAQCQLSSYGE 576

Query: 349 MHNRLRMITASFLVKDLLVDWRI--GEEYFMSQL-LDG-DLASNNGGWQWAAS 397
           +HN +RM     L+       R      +   +  LDG D AS  GG  W   
Sbjct: 577 LHNNVRMTWGKSLLGWCPTPQRALDVALHLNHRYALDGCDPAS-YGGVLWCFG 628


>gi|157413923|ref|YP_001484789.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
 gi|157388498|gb|ABV51203.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
          Length = 384

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%)

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E +  +          K +  +  +   + D  L +    G T     ++ + +L    +
Sbjct: 74  EIFWRVYWKGWMENRPKVWENFISEKNLDFDYELYKKAINGNTEIDFFNSWVLELKQHNY 133

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +HN  RM  AS  + +L + W++G ++F   L DGD ASN   W+W          Y
Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLSWRWVGGLQTKGKQY 190


>gi|89255766|ref|YP_513128.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009709|ref|ZP_02274640.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367212|ref|ZP_04983242.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953050|ref|ZP_06557671.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143597|emb|CAJ78781.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253032|gb|EBA52126.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
          Length = 201

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 78/214 (36%), Gaps = 15/214 (7%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +S RQ  F+   L ++   L++ G            D++E  +    +  +  ++ +++ 
Sbjct: 1   MSHRQYLFLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQET 56

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             +   +  +  ++       ++           ++            + + + + +++A
Sbjct: 57  WNDWTYQRDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRA 112

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             +   +   ++  P   S    + D            G   AL IL  F  ++   Y +
Sbjct: 113 PTKLKFICENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTK 167

Query: 233 QRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLK 264
           +   P       S+LSPY++ GV+S ++ + +  
Sbjct: 168 EMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKAN 201


>gi|212275870|ref|NP_001130580.1| hypothetical protein LOC100191679 [Zea mays]
 gi|194689542|gb|ACF78855.1| unknown [Zea mays]
          Length = 493

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 131/466 (28%), Gaps = 66/466 (14%)

Query: 11  LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54
           + W+  D R+ DN                  L  A           F   P  +   G  
Sbjct: 29  VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            RQ  F+   L ++      +G+ F   +    +     L S   +   + L  +     
Sbjct: 77  LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131

Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168
                   + + L      +     D   ++P  +         K +      +I     
Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191

Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                   A        ++     +                +P      +  L     F 
Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFL 251

Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +++  Y   R+ P      S LSPYL  G +S ++C     E      + PKS      
Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPII 336
             +I RE   +   + P          W  K   +      +            T  P+ 
Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQLENAKTSDPLW 368

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQ 393
           +A+  ++   G MH  +RM  A  +++                    +DG   +   G  
Sbjct: 369 NASQLEMVHHGKMHGFMRMYWAKKILEWTSQPEEALSIAIYLNDKYHIDGRDPNGYVGCM 428

Query: 394 WAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRHWLP 430
           W+    +D      P F   R  N     ++FD     ++++  +P
Sbjct: 429 WSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLVP 474


>gi|330814061|ref|YP_004358300.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487156|gb|AEA81561.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 271

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 13/208 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W+R D RI DN ALY  C+  + K+ A FI   ++++     + Q  +++ +L+  Q  
Sbjct: 7   LWVREDFRIDDNPALYNICNIQE-KIEAFFIYDEKKFKNR---SAQRWWLHKTLVNFQNK 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L+  GI F+ +     D+ I ++      +++   +YN     +E   +  +EK L    
Sbjct: 63  LNNIGISFKVY----ADNEIVYIKKLIKNEKIDNFYYNAIARPDERLIENEIEKNLAIYD 118

Query: 132 ICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLTG 186
           +     +S  L  P S+       ++V+TP+ +   +  ++       +     +     
Sbjct: 119 VNYEKFESNLLQDPFSVRKKDNTPFQVFTPYWRNAEEQYLKNKNFISKKITYKKSTIKED 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
                N+       F+  +  +  GE  
Sbjct: 179 NTAVLNLILPKKEWFEKFEKFWTPGEDM 206


>gi|123969094|ref|YP_001009952.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
 gi|123199204|gb|ABM70845.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
          Length = 384

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 15/194 (7%)

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
            +    F K K+  Y + R+            +LSP+++  +LS     + +K ++    
Sbjct: 8   QNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLIHDIKSKYKIKN 67

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                            E +  +          K +  +  +   + D  L +    G T
Sbjct: 68  STKF-----------VEEIFWRVYWKGWMENRPKVWRNFISENNLDFDYELYENAINGNT 116

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
                ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +SN   
Sbjct: 117 ELDFFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLLS 176

Query: 392 WQWAASTGNDSVPY 405
           W+W          Y
Sbjct: 177 WRWVGGLQTKGKQY 190


>gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum]
          Length = 150

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 37  VIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           V+AV+   P  + +           ++ F+  S+  ++K+L  +G               
Sbjct: 5   VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 60

Query: 92  EWLDSYCLQQRVTKLFYNRQYEI 114
             L           ++ +R+   
Sbjct: 61  TVLVELAKAVGAEAVYAHREVSH 83


>gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense]
          Length = 173

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 37  VIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           V+AV+   P  + +           ++ F+  S+  ++K+L  +G               
Sbjct: 9   VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 64

Query: 92  EWLDSYCLQQRVTKLFYNRQYEI 114
             L           ++ +R+   
Sbjct: 65  TVLVELAKAVGAEAVYAHREVSH 87


>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
 gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
          Length = 465

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 136/429 (31%), Gaps = 29/429 (6%)

Query: 19  RITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQ 74
           R  DN AL  A   ++   + V +        +      +AR   F+   L   +  + +
Sbjct: 35  RSRDNPALEHAIDEANRLGLPVVVGFGLLDGGR-TFPEANARHYAFLLQGLAAARAGVER 93

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
           +GI F   + +    ++       L          ++    E+ R            +  
Sbjct: 94  RGIAFVLRRSTPAAAALALGAEAALAVLDRGYLTVQRAWSAEIARGLACPVVQVEGDVVV 153

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
             + +      +      ++ +++  +   L    V      L + +         +   
Sbjct: 154 PVETASDKHEFAARTLRPKLQRLWDSYLAPLRARRVAHAADGLALASDLDVSDPEAALAA 213

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
              D   + +      GE  A+  L  +       Y   R+ P     S +SPYL  G +
Sbjct: 214 LTLDRAVRPVRRFR-GGEDEAMARLDAYLAGPFAQYGTVRNRPEAGAASHMSPYLHFGQI 272

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--- 311
           SP        +        P+  A      ++ RE   + + + P     +  +P     
Sbjct: 273 SP---VAIALKVRAAAAGGPEDKASYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARR 329

Query: 312 ----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365
                  +     +   A ++G T     +AAMR++   G+MHN LRM     +++    
Sbjct: 330 ALAEHAGDRRDPLYDEAALEEGRTHDRHWNAAMREMRETGYMHNHLRMYWGKKILEWSPS 389

Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR--IFNPTIQ-----GKR 417
               +R          LDG   ++     W    G    P+ R  IF           ++
Sbjct: 390 PEEGFRRTLRLNNRYFLDGRDPNSFTNVAWI--YGLHDRPWGRRPIFGTVRYLGPNTLRK 447

Query: 418 FDPQGTFIR 426
           FD  G ++R
Sbjct: 448 FDAAG-YLR 455


>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
 gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
          Length = 812

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/415 (12%), Positives = 132/415 (31%), Gaps = 23/415 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I   E++ +  I+ +        L 
Sbjct: 318 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFTERYINIK-----LKVLK 372

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++   +  I F        D+ +E+L     + +     ++      +   + +    
Sbjct: 373 NLEEGFKKLNIPFYVIPIFMIDEFMEFLR--IHEIKTVVCDFHSLEYQKKFVENLVQMSN 430

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   + +    +++    +       +  +    +  L   L++          I+   
Sbjct: 431 KKKIKVLQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQTIKYPE 490

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQL 245
           P    ++ +              +  +     + +   +        +R+ P     + L
Sbjct: 491 PFDIVSLYKKLTVNNSCSVLSNFVCTEKKAKEILENFCKNKLDKYSVKRNDPNYDTINLL 550

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCM 303
            PY+++G++S ++C   + +  +       S    + N+  LI +E   +   +  +   
Sbjct: 551 IPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYDN 610

Query: 304 GKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W ++     +            ++   T   I +    QL   G +H  LRM  
Sbjct: 611 FNGAKDWAKESLKKHELDKRNHLYDYEDFRSARTHNDIWNCCQLQLVNEGTIHEFLRMYW 670

Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           A  ++          +   +      +DG  A+            + S     IF
Sbjct: 671 AKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIMSIMGVHDQSWNERSIF 725


>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
           yoelii]
          Length = 849

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 121/373 (32%), Gaps = 20/373 (5%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I   E++ +  I+ +        L 
Sbjct: 354 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFTERYINIK-----LKVLK 408

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++   +  I F        D+ +E+L     + +     ++      +   + +    
Sbjct: 409 NLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IHEIKTVVCDFHSLGYQKQFVENLVQMSN 466

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   I +    +++    +       +  +    +  L   L++          I+   
Sbjct: 467 KKKIKILQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQIIKYPE 526

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQL 245
           P    ++ +              +  +     + +   +        +R+ P     + L
Sbjct: 527 PFDIVSLYKKLTVNNSCSVLSNFVCTEKKAREILEDFCKNKLDKYSVKRNDPNYDTINLL 586

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCM 303
            PY+++G++S ++C   + +  +       S    + N+  LI +E   +   +  +   
Sbjct: 587 IPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCFYNKNYDN 646

Query: 304 GKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W ++     +            ++   T   I +    QL   G +H  LRM  
Sbjct: 647 FNGAKDWAKESLKKHELDKRNHLYDYEDFRNARTHNDIWNCCQLQLINEGTIHEFLRMYW 706

Query: 358 ASFLVKDLLVDWR 370
           A  ++        
Sbjct: 707 AKKILNWSENSRT 719


>gi|50914602|ref|YP_060574.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
 gi|50903676|gb|AAT87391.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
          Length = 62

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           P+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++ +
Sbjct: 2   PQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKI 61


>gi|194336953|ref|YP_002018747.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309430|gb|ACF44130.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
          Length = 104

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
          + W+  D R+  N AL  A   ++     ++ +F   P          R   F+   L +
Sbjct: 21 IYWMSRDQRVRHNWALLFARRKAELLQQPLVVLFTLAPTFLGAP---LRHYDFMLKGLRE 77

Query: 68 VQKSLSQKGIVFQYHQCSN 86
          V+  L    I F   Q   
Sbjct: 78 VEADLKTLNIPFLLLQSQP 96


>gi|254451912|ref|ZP_05065349.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198266318|gb|EDY90588.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 276

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 38/73 (52%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
               D   ++L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD A+N   W
Sbjct: 1   MDYFDTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNW 60

Query: 393 QWAASTGNDSVPY 405
           +WAA       PY
Sbjct: 61  RWAAGLHTRGKPY 73


>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
 gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
          Length = 473

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 123/407 (30%), Gaps = 25/407 (6%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            DLR+ +N  ++ A + S      +FI  P   +    +  Q   I  ++  ++K   ++
Sbjct: 23  RDLRLLNNHCIHYAYNLSYHYQSQMFIGVP--IKDIKCNDVQYSLILENIEDLRKESIKQ 80

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVICK 134
            +        N       + +  L     +        I ++         ++    I  
Sbjct: 81  NLYLTILDNVNTFVKTNKIKNIILDWSPLREHIAFCNNIKDLCTKDKLFCIQIDSHNIVP 140

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                V     S +   L  +          +Q     +  +     ++       +  P
Sbjct: 141 CKILDVYKRTSSSVKIQLFKHFFEYLNEYDDLQLEKSVNDSNFTSKNMKFIINAWDTLEP 200

Query: 195 RFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             F+            P       +       L ++  F   K + Y E R+ P + G S
Sbjct: 201 HKFNDKKKVSSFKCNIPKYEPAKYYQGTYSAGLKVMDDFFNNKFHIYNECRNNPDVDGLS 260

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPY+ +G+LSP++      E+F         G  + +   IWRE   H          
Sbjct: 261 NLSPYIHLGILSPQKIIKLAYEKFYKKDKDNLDGYVAEI--FIWRETSEHFCYHNKDYDN 318

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               + W             +          G T     +AA  QL  +  +H  +RM  
Sbjct: 319 IMGALEWARDSLHEHAKDEREHLYTKEELEFGKTNDSFWNAAENQLLKLNKIHGYVRMYW 378

Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGND 401
           A  LVK         +   E      +DG+  +   G  W      D
Sbjct: 379 AKQLVKWTKTPEEAVKIGIELNDKYSIDGNDPNGYTGVMWCICGTMD 425


>gi|218506351|ref|ZP_03504229.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil
          5]
          Length = 57

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
          ++W R DLR+ DNKAL AA H S   +I ++I  PE      + A Q+ 
Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIICLYIREPEAAGTGPLGAAQAW 57


>gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis]
          Length = 157

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +   + +      D   + +  A  +L  +  R++ R++ 
Sbjct: 28  NSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYIC 87

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 88  FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 146

Query: 356 ITASFLVK 363
           I +SF VK
Sbjct: 147 IVSSFAVK 154


>gi|222641972|gb|EEE70104.1| hypothetical protein OsJ_30114 [Oryza sativa Japonica Group]
          Length = 741

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 13 WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
          W ++DLR+ D+  L AA        V+ +++           S  +   ++
Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILD--DASKWREQLLF 97


>gi|302847739|ref|XP_002955403.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
 gi|300259245|gb|EFJ43474.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
          Length = 128

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46
           S+ L WLR DLR  DN+AL  AC  +DA V+ VF   P 
Sbjct: 69  SLGLWWLRRDLRTADNEALTGACRQADA-VLPVFCFDPR 106


>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
 gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
          Length = 497

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 124/426 (29%), Gaps = 39/426 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R   N +L  A   S      + +    +      S R   F+   ++  + 
Sbjct: 24  LYWMIANRRTRYNYSLQRAVELSKELNKPLLVFEALRCGYEWASDRLHRFVLQGMVDNRD 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL    + +  +           L +   +           + I ++ +       ++  
Sbjct: 84  SLQDSPVGYYCYVEPKAGHGSGLLSALATKACAVVTDDFPCFFIPQMLKSVAPRLSVRLE 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I  +    +                ++      L Q      L  + +P          
Sbjct: 144 AIDSNGLLPLRAASQIYPTAYAFRRFLHKALPDHLDQTPKINPLSHIDLPEFSSLPAKIL 203

Query: 191 SNIPRFFDY--------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              P   D                 Q     F  G + A   L++F   +   Y E+R++
Sbjct: 204 ERWPMASDQLLQATPEVLADLPLDHQVGPADFDGGMKAASKTLKQFLNVRFERYAEERNL 263

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE------------ 284
           P  + TS LSPYL  G +S  + + R+ +       K      +                
Sbjct: 264 PEEEVTSGLSPYLHFGHISVHEVFKRVADREDWNAAKVIDQKATGKRAGWWQMSETAEGF 323

Query: 285 ----LIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFP 334
               + WRE   ++          +    W          +     + L+ ++Q  T   
Sbjct: 324 LDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEHAADKRDPCYTLEEFEQARTHDE 383

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGG 391
           + +AA  QL T G MHN +RM+    ++          E          +DG   ++  G
Sbjct: 384 LWNAAQTQLVTEGRMHNYMRMLWGKKILHWSKSPQAALEIMMHLNNKYAVDGRNPNSYSG 443

Query: 392 WQWAAS 397
             W   
Sbjct: 444 IFWCLG 449


>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
 gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
          Length = 493

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 129/427 (30%), Gaps = 44/427 (10%)

Query: 11  LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+   R   R+  N  L  A H +    + + I  P   R    S R  HF+   + +
Sbjct: 28  LYWMISAR---RLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAE 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
                 ++GI +  +        +  +++Y  +     +  +            L ++  
Sbjct: 85  HHALCQERGIAYHPYVEPEPGHGVGLVEAYAQKAAAV-ITDDFPCYFLPRMVQTLGQRID 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  S     +     +   A    +      K  +     AD  + P+ ++ + G 
Sbjct: 144 VPLECVDSNGIFPMRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSMEIPGQ 203

Query: 188 VTPSNIP-------------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +     P                          F  G + A   + +F K ++  Y + R
Sbjct: 204 IARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRYADDR 263

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNE------ 284
           + P  +  S LSPYL  G +S  + ++RL  +                  W         
Sbjct: 264 NNPEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSPAAEA 323

Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGF 333
                + WRE   +  +        +    W  +           +           T  
Sbjct: 324 FLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIAQTHD 383

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390
            + +AA RQL   G MHN LRM+    +++  L   +  E          +DG   ++  
Sbjct: 384 ELWNAAQRQLVREGRMHNYLRMLWGKKVLEWSLTPQQAVETLIHLNNKYAVDGRNPNSYS 443

Query: 391 GWQWAAS 397
           G  W   
Sbjct: 444 GIFWVFG 450


>gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 457

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 120/420 (28%), Gaps = 43/420 (10%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W   D R+ DN AL  A     + +  V  VF+  P        SARQ  F+   L ++ 
Sbjct: 1   WCSRDQRVDDNWALLHALSVAKSRNVPVAIVFVLVPSFAS---ASARQYAFMLRGLREMA 57

Query: 70  KSLSQKGIVFQYHQCS------------------------NFDDSIEWLDSYCLQQRVTK 105
           K+     + F   +                                EW +      +   
Sbjct: 58  KTCEATRLPFHLVRGDANPAAAAAAAATRLDASLVVTDFSPLRAPREWRNDLSDALKRAN 117

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           +  +     N V   +   KR       +      L    +       +         + 
Sbjct: 118 VTVHEVDAHNVVPVWEASNKREYAARTIRPRITKRLAAFLTSFPTRDAVRDAALAAAASP 177

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
               V    R      I          +P    +P +   P      +  +     F   
Sbjct: 178 RATDVPTPERVDWDALIADARGRDGGVVPETL-HPTRRKPPGEAAARRALVGGPDAFLPS 236

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y ++ D    +  S LSPYL  G LS ++    L+           +        +
Sbjct: 237 RLAMYDKRNDPNVPRALSGLSPYLHFGQLSAQRVA--LETNAARTEATAAAADAFVEEVV 294

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW-----KQGYTGFPIIDAA 339
           +  E   +     P+         W  E +  + +     A+     + G T   + +AA
Sbjct: 295 VRSELSDNYCFHEPNYDNINGASGWAIESLRLHAEDARDPAYSLEELESGSTRDELWNAA 354

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMS-QLLDGDLASNNGGWQWA 395
             ++   G MH  LRM  A  +++              Y      LDG  ++   G  WA
Sbjct: 355 QLEMVHFGAMHGFLRMYWAKKILEWTAEGPEVALERAIYLNDKYQLDGRDSNGYVGCMWA 414


>gi|110637465|ref|YP_677672.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
          33406]
 gi|110280146|gb|ABG58332.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
          33406]
          Length = 103

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5  TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            +SV++VW + DLR TD++ LY      +  V+ V+   P     +    R S F++ S
Sbjct: 2  NKVSVNIVWFKRDLRFTDHEPLYN-DRQQNVPVLLVYFFEPSMMTYNNSDTRHSRFVHES 60


>gi|218202510|gb|EEC84937.1| hypothetical protein OsI_32152 [Oryza sativa Indica Group]
          Length = 741

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 13 WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
          W ++DLR+ D+  L AA        V+ +++           S  +   ++
Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILA--DASKWREQLLF 97


>gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
 gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
          Length = 372

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 10/139 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A          +   F  T         S RQ  F+   L  
Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLN---ASLRQFDFLLEGLKS 180

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           VQ+   +  I F     S   D    L+ +     ++ +  +             ++ +L
Sbjct: 181 VQRECHELNIGFHVLDGS--GDLT--LNDWVQTNNISAVVCDFNPLRVVRDWVATVKSQL 236

Query: 128 QHRVICKSFDDSVLLPPGS 146
              V     D   ++P   
Sbjct: 237 APHVFFAQVDAHNIVPCWQ 255


>gi|77920307|ref|YP_358122.1| deoxyribodipyrimidine photolyase [Pelobacter carbinolicus DSM 2380]
 gi|77546390|gb|ABA89952.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter carbinolicus
           DSM 2380]
          Length = 490

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 111/425 (26%), Gaps = 38/425 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R++ N AL  A   +      + +           + R   F    +    +
Sbjct: 25  LYWMNATRRLSWNFALQRALSWARKLDRPLLVVETLPCDHPHANLRHHAFALDGMADNAR 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--------------QRVTKLFYNRQYEINE 116
            ++     +          +IE + +                     T+    R     E
Sbjct: 85  YMADHPATYYPFVEDQPGQNIELIAALAKHACVVLCDLRPLRESLGETEQLAGRLSGRLE 144

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                 +   L       +           +L H L M          L           
Sbjct: 145 RVDSNGILPLLAADREFTTAYSLRRFLQRHLLPHLLNMPLPEPLAEHTLPPCPAVPSAIR 204

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              PA          +                  G + A   L  F +E +  YV  R+ 
Sbjct: 205 KRWPAADRQLLTEDRSRLHNLPIGQNTPAVPTKGGSEAARKALDLFLREHLDLYVAHRNQ 264

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNE----- 284
           P    TS LSPYL  G +S  +   RL +                +SG +    +     
Sbjct: 265 PQRDVTSGLSPYLRWGHISSHEIVQRLLDREGWHPSDLGLETRGQRSGWWGVGADAEAFL 324

Query: 285 ---LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPI 335
              + WRE               +    W +    +              ++ G T  P+
Sbjct: 325 DQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEEFQAGRTHDPL 384

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGW 392
            +AA  QL   G +HN LRM+    +++                    LDG   ++  G 
Sbjct: 385 WNAAQMQLVREGRLHNYLRMLWGKKILQWSPTPELALATMIELNDRFALDGCDPNSYSGI 444

Query: 393 QWAAS 397
            W   
Sbjct: 445 GWVLG 449


>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
          Length = 443

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 120/402 (29%), Gaps = 29/402 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R+  N +   A    +  +  ++ + I     +     + R   F    L  
Sbjct: 21  LYWMQGAFRVKYNHSFEYAKYLSNKHNIPLLVLIIVD---FSYPEGNFRSFKFFLEGLKD 77

Query: 68  VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           V +     Q GI              + L SY    ++     +    +  ++     E 
Sbjct: 78  VFEETISQQIGINIVV------GSFQDVLKSYIDNAKIMITDKSYLPNLINIKNTIYSEN 131

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           ++    +  +    V +        A  +             +  +       +   +  
Sbjct: 132 KITIYQVDTNLVIPVNIVSQKKEYAAYTIRPKILKLLYEYRNDFEEIKYNGSFL-KPKTE 190

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +               +   +  G + A  IL  F  +K  YY + R+ P  +  S +
Sbjct: 191 VDLNNIENELRKQNLVNVLPAPYIGGYKEAKKILDYFVSKKFKYYKDNRNNPEKESESNI 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G +SP +  + L+                 +     RE   +   +   +   +
Sbjct: 251 SPYLHFGNISPLEILDTLEIFDKSSENYYSFFEEMVIR----RELAHNFTYYSNDLNNLE 306

Query: 306 PFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +P      + +     +        ++   T   I +A+ R+L   G +HN +RM   
Sbjct: 307 NLLPAWAFKTFYEHKDDKREYVYSLEEFENSKTHDEIWNASQRELKKRGKIHNYMRMYWG 366

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +++         +          LDG   ++  G  W   
Sbjct: 367 KKIIEWSKNIEDAYDAMIYLNNKYALDGRDPNSYVGILWCFG 408


>gi|258541537|ref|YP_003186970.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632615|dbj|BAH98590.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635672|dbj|BAI01641.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638727|dbj|BAI04689.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641781|dbj|BAI07736.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644836|dbj|BAI10784.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647891|dbj|BAI13832.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650944|dbj|BAI16878.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653935|dbj|BAI19862.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 211

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    + +  LV LR+D R+ DN AL+AAC      V+  ++         G   R + +
Sbjct: 1   MVDAHSPAPVLVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAALQDASGT--RIADW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
             A+  Q+  SL ++G                   +       T +F+NR+Y+   +  D
Sbjct: 58  AQAACAQLATSLHEQGQTLFMLSGPTRLSV----PALAQAVHATDVFWNRRYDAPGIAAD 113

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             +   L+ + +   S    +L  P +I   A Q Y+V+T + +A   
Sbjct: 114 TDVHASLKKQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARN 161


>gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis]
          Length = 263

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 9/242 (3%)

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++    +G            D  E L     +     +F+N  Y      RD+ +E  
Sbjct: 2   ALREDYRDRGGGLVVAH----GDPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVESA 57

Query: 127 LQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I        V   PG+I  +    Y V++ F K  +    ++        A+R  
Sbjct: 58  LDDADIDHETFHDAVHHEPGAITTNDGDPYAVFSYFGKKWLDREKESSYPPPNGDALRAG 117

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P++    FD P          G + A   L  FC+  +  Y  +R+ PA  GTS+L
Sbjct: 118 DDDLPTSDDLGFDEPDATPPE---AGTEAARDRLDSFCEAAIGEYETEREYPARAGTSRL 174

Query: 246 SPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S  L  G +  R+   R+ +          +    ++  EL WREFY  ++ + P V   
Sbjct: 175 SQDLKYGTIGIREVSERVAEAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVVTE 234

Query: 305 KP 306
             
Sbjct: 235 NY 236


>gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
 gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
          Length = 529

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 111/378 (29%), Gaps = 33/378 (8%)

Query: 23  NKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79
           N+AL  A   ++     VIA+F            + R   F++  L +++++L ++ I F
Sbjct: 62  NEALETAVDRANVSGVPVIALFC---STANYPEANERHIGFMFEGLCELREALERRKIAF 118

Query: 80  QYHQCSNF----------------DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
               CS                     +  L  +  +          + E + V     +
Sbjct: 119 YAVACSPPEAIIVASERAVEIVVDGAYLRLLRRWREELATRATCTVTEVETDCVVPQLSM 178

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +               + L           +  +Y     A  ++     +    +P  R
Sbjct: 179 KHARAEVAAATFRPKVLPLIGKYTRVACAVLPYIYGALDDATRKSFESTIVEFDVLPLHR 238

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQG 241
                             +       +G Q+           K     Y + R+ P +  
Sbjct: 239 GVDACLGVLDTHGLVRDPKCPRVSSHVGGQSQARAKLDAFLTKKMLSRYHKSRNDPTLCL 298

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            S LSP++  G +S  +   +  E            +    +L+ELI R       A   
Sbjct: 299 QSHLSPHIHYGQISVVEIARKTLEFRDAHKEDADVCASIDVFLDELIVRRELAINFALRN 358

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQ-------GYTGFPIIDAAMRQLNTIGWMHNR 352
                   +P   K    K +   + W         G T   + +A+ RQL + G  HN 
Sbjct: 359 PNYDTYDGLPTWAKETLEKHADDRREWTYTLEEFECGSTHDKLWNASQRQLVSTGKQHNY 418

Query: 353 LRMITASFLVKDLLVDWR 370
           LRM     +++       
Sbjct: 419 LRMYWGKKILEWSASPEE 436


>gi|124267245|ref|YP_001021249.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1]
 gi|124260020|gb|ABM95014.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1]
          Length = 88

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
          DLR+ D+     A     A  +A+FI  P          R+  ++    + ++ +L+ +G
Sbjct: 7  DLRVADHATPAEAARGDAA--LALFIVEPAWLTSPESHPRREAWLLKCRVALRDALAARG 64

Query: 77 IVFQYHQCSNFDDS 90
          +          D  
Sbjct: 65 LPLPVRTGEAVDGP 78


>gi|227553401|ref|ZP_03983450.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177452|gb|EEI58424.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 80

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
          ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4  VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWL 94
          + + Q     + H      + ++  
Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLF 80


>gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
 gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
          Length = 507

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 118/442 (26%), Gaps = 58/442 (13%)

Query: 11  LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + WL   R   R+  N AL  A   +      + I  P + R    S R   FI   +  
Sbjct: 26  VYWLIAQR---RLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRD 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
                    +V+  +           L                 + +  +      +   
Sbjct: 83  NAAEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPA 142

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +I  +    +     +          +      AL Q  +   L             
Sbjct: 143 RLELIDSNGVLPLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPCPD 202

Query: 188 VTPSNIPRFFDYPFQAIDPMF----------------------------PIGEQNALHIL 219
                  R    P + +                                P G   A    
Sbjct: 203 GESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTVEATRRW 262

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           ++F  +K+  Y + R+ P    T+ LSP+L  G +S  +  + + E       +      
Sbjct: 263 QEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSILEHEGWSADQTSKPNG 322

Query: 280 SWLN--------------ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              +               L WRE   +     P        +P   +   N+     + 
Sbjct: 323 KNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 382

Query: 326 -------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF 376
                  ++   T   I +AA R+L   G MHN +RM+    ++              + 
Sbjct: 383 HLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEFMIHL 442

Query: 377 MSQL-LDGDLASNNGGWQWAAS 397
            ++  LDG   ++  G  W   
Sbjct: 443 NNKYGLDGRDPNSYCGILWVLG 464


>gi|295313748|ref|ZP_06804325.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 195

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 74/207 (35%), Gaps = 15/207 (7%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L ++   L++ G            D++E  +    +  +  ++ +++   +   +
Sbjct: 2   FLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQ 57

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +  ++       ++           ++            + + + + +++A  +   +
Sbjct: 58  RDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFI 113

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              ++  P   S    + D            G   AL IL  F  ++   Y ++   P  
Sbjct: 114 CENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVT 168

Query: 240 QG--TSQLSPYLSIGVLSPRQCWNRLK 264
                S+LSPY++ GV+S ++ + +  
Sbjct: 169 AFKSCSRLSPYIAFGVISLKEIYQKAN 195


>gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 494

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 121/452 (26%), Gaps = 51/452 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R  DN AL  A   +    A +  V+              RQ  F+   + +
Sbjct: 44  LYWMHREHRARDNWALLHAHAEAARLGAPLAVVWCLANSFLGAT---IRQFGFLLRGMEE 100

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            Q+ L+  GI     +     +  E +  Y        +  +      +        + L
Sbjct: 101 TQRHLAAAGIPLVVLR----GNPPEEVVRYARSANAALVVTDFDVLRLKRTWLASAARGL 156

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTG 186
                    D   ++P            +   P    L+ + L               + 
Sbjct: 157 AGVCSLHEVDGRNVVPCRVASPKREYAARTLRPKIHRLLPEFLTPIPALPPASSVSGASS 216

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK----------FCKEKVYYYVEQRDI 236
              P                +  +G    +  +                   +    R+ 
Sbjct: 217 VPVPDVDWASLRDNLAVDRTVAEVGPLPGMPDIAPGEDAARAALDDFIHARLHRYHLRND 276

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   G S LSPYL  G+LS +            L       A      ++ RE   +   
Sbjct: 277 PNAHGVSGLSPYLHFGMLSAQ---RAALAAQAHLEAPDDCRASFLEELIVRRELADNFCL 333

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMH 350
                     F  W              A           T  P+ +AA  ++   G MH
Sbjct: 334 HAQDYDAVTCFPDWALATLDKHRHDPRPALYDEAQLAAARTADPLWNAAQTEMVCAGRMH 393

Query: 351 NRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF- 406
             LRM  A  ++          R          LDG  ++   G  W+A  G    P+  
Sbjct: 394 GYLRMYWAKQILLWSPTPEDAVRTAVTLNDRYFLDGRDSNGYTGIAWSAG-GVHDRPWGE 452

Query: 407 RIFNPTIQG-----------KRFDPQGTFIRH 427
           R   P  QG            +FD  G +IR 
Sbjct: 453 R---PV-QGTIRSMTYNGARSKFD-VGAYIRR 479


>gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
          Length = 395

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 105/354 (29%), Gaps = 25/354 (7%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F    L  + K   Q  I F     S      E L  +  +  +  +  +        R 
Sbjct: 9   FWIEGLKLIHKECKQLNITFVVLNGSGD----ETLVDWVKKYNIAGIVCDFNPLRIVRRW 64

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              ++ +L   V     D   ++P            +      K  +++ +      +  
Sbjct: 65  TARVKTQLPSDVYFAQIDAHNIVPCWVASQKQEINARTMRNKLKTNMKSFL-KPFPLVMK 123

Query: 180 PAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            +I     + P+                            G  NA   L KF  + +++Y
Sbjct: 124 HSIDSKARIDPATCDEIDWKKLLESRDADKNIEPVTWAQAGYNNACVALAKFIDDNLWHY 183

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E R+ P     S +SP+   G +S ++    L    +                 + RE 
Sbjct: 184 KETRNDPNADSQSNMSPWYHFGQISVQRVVWYLIVAKMQHFESNV--ETYIEECFVRREL 241

Query: 291 YRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
             +   +  +    +    W ++       E  +  +  +  +   T   + +AA  QL 
Sbjct: 242 ADNFCYYNINYDRFEGAPDWAKETLSLHANEGREYCYNRRELENSETHDILWNAAQTQLK 301

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395
           T G MH  +R+  A  +++  +                 LDG   +   G  W+
Sbjct: 302 TQGKMHGYMRIYWAKKILEWSISPTVALINAIYFNDKYSLDGRDPNGYAGCMWS 355


>gi|218459246|ref|ZP_03499337.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli Kim 5]
          Length = 141

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 39  AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
            ++I  P       + A Q+ +++ SL  +  SL ++             +++E L    
Sbjct: 13  PLYIREPTPAGTGPLGAAQAWWLHHSLEALDMSLRKRQGRLVL----ASGEALEVLRGVI 68

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKV 157
            +     +++NR+Y+ + +  D  ++  L+ + I  +SF   +   P  ++      Y+V
Sbjct: 69  RKSSADAVYWNRRYDPSGMSIDVRIKAELEKQGIEARSFTGQLPHDPCRLVTGKGTPYRV 128

Query: 158 YTPFRKALIQ 167
           YTPF +AL  
Sbjct: 129 YTPFWRALES 138


>gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum]
          Length = 145

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 38  IAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
           +AV+   P  + +           ++ F+  S+  ++K+L  +G                
Sbjct: 1   LAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPET 56

Query: 93  WLDSYCLQQRVTKLFYNRQYEI 114
            L           ++ +R+   
Sbjct: 57  VLVELAKAVGAEAVYAHREVSH 78


>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 456

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 17/396 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R + R+  N AL  A   ++   + + +             R   F+   +   Q 
Sbjct: 21  LYWCRWNRRVEANHALLHAAETANRMDLPLVVYERLSCAYPTACDRFHTFVLEGVPHFQA 80

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + GI + +          + +        +         +         +       
Sbjct: 81  QLRKLGIPYIFQLPRR-----KTVRDERRDAVLRDAAVVVTDDCLRAAPRLDVRLEAVDG 135

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                          +          +    + A    + +            ++ P   
Sbjct: 136 SCIVPVGAIPGRSYAAYSIRPRIHRLLPKYLKAAPALEIRRRSRERFEDLHTEVSAPNIA 195

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           S +              FP G   A   L++F +E++  Y   ++ P++  TS+LSPYL 
Sbjct: 196 SLVAECEIDHGVRASTTFPGGRMAAEAGLQRFLEERLRRYARDKNEPSLHATSELSPYLH 255

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +   +    ++E                   ++ RE   +   + P +        W
Sbjct: 256 YGHIGALEVALAVREH---AAAHKLIADEFLEELIVRRELAHNFARYAPRLDSLDVLPDW 312

Query: 311 TEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             K   +              ++   T   + +A  ++L   G +H   RM     +++ 
Sbjct: 313 ARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNATQKELVLRGKIHGYYRMYWGKRIIEW 372

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
                              LDGD  +      W   
Sbjct: 373 SPSAEEAHATMLWLHDRYALDGDDPNTYTNILWCFG 408


>gi|255671641|gb|ACU26402.1| deoxyribodipyrimidine photolyase [uncultured bacterium
           HF186_25m_30B18]
          Length = 487

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 116/396 (29%), Gaps = 40/396 (10%)

Query: 11  LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+   R   R TDN  L  A ++++   + + +  P +      S R   F+   +  
Sbjct: 26  LYWMVSAR---RTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRD 82

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             ++     G+ +  +           L++   Q  +    +   + +  +         
Sbjct: 83  NAEAFDGVAGVTYLPYVEPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLD 142

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +Q  V+  +    +   P            V+    + + +      L S  +P      
Sbjct: 143 VQVDVVDSNGILPLFAAPREFTTAHSFRRHVHKNVLEHVAEMPEAEPLASAELPPAPARD 202

Query: 187 PVTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            +  +    +                 ++ P+   G +            +      +R+
Sbjct: 203 ALNIAPWAAYTGEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAYGERN 262

Query: 236 IPAIQGTSQLSPYLSIGVLSP----RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                  + LSP+L  G +      R+   R +     +  KP      W       E +
Sbjct: 263 QVERDIGTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESF 322

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------------------LQAWKQGYTGF 333
              +  +  +      + W +   +                         +A   G T  
Sbjct: 323 LDQVLTWRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHD 382

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            + +AA RQL   G +HN LRM+ A  +++      
Sbjct: 383 MLWNAAQRQLRREGMIHNYLRMLWAKKILEWTEHPR 418


>gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 479

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 113/431 (26%), Gaps = 52/431 (12%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R+  N AL  A   +      + I  P + R    S R   FI   +           +V
Sbjct: 6   RLNWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAESLPVV 65

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           +  +           L                 + +  +      +   +  +I  +   
Sbjct: 66  YYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLELIDSNGIL 125

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
            +     +          +      AL Q  +   L                    R   
Sbjct: 126 PLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPCPDGESMAERRKKL 185

Query: 199 YPFQAIDPMF----------------------------PIGEQNALHILRKFCKEKVYYY 230
            P + +                                P G   A    ++F  +K+  Y
Sbjct: 186 LPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQEFLNKKLSRY 245

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------- 282
            + R+ P    T+ LSP+L  G +S  +  + L +       +                 
Sbjct: 246 NDDRNHPDEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNGKNHGFWNVGEN 305

Query: 283 ------NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-------WKQG 329
                   L WRE   +     P        +P   +   N+     +        ++  
Sbjct: 306 AEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERPHLYTLAEFENA 365

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYFMSQL-LDGDLA 386
            T   I +AA R+L   G MHN +RM+    ++              +  ++  LDG   
Sbjct: 366 ETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEFMIHLNNKYGLDGRDP 425

Query: 387 SNNGGWQWAAS 397
           ++  G  W   
Sbjct: 426 NSYCGILWVLG 436


>gi|255671724|gb|ACU26482.1| deoxyribodipyrimidine photolyase [uncultured bacterium
           HF186_25m_13D19]
          Length = 459

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 111/385 (28%), Gaps = 34/385 (8%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQ-KGI 77
           R TDN  L  A ++++   + + +  P +      S R   F+   +    ++     G+
Sbjct: 6   RTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAEAFDGVAGV 65

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
            +  +           L++   Q  +    +   + +  +         +Q  V+  +  
Sbjct: 66  TYLPYVEPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLDVQVDVVDSNGI 125

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
             +   P            V+    + L +      L S  +P       +  +      
Sbjct: 126 LPLFAAPREFTTAHSFRRHVHKNVLEHLAEMPEAEPLASAELPPAPARDALNIAPWAACT 185

Query: 198 DYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                           ++ P+   G +            +      +R+       + LS
Sbjct: 186 GEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAYGERNQVERDIGTGLS 245

Query: 247 PYLSIGVLSP----RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           P+L  G +      R+   R +     +  KP      W       E +   +  +  + 
Sbjct: 246 PHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESFLDQVLTWRELG 305

Query: 303 MGKPFIPWTEKIEWNKDSHL------------------LQAWKQGYTGFPIIDAAMRQLN 344
                + W +   +                         +A   G T   + +AA RQL 
Sbjct: 306 YTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHDMLWNAAQRQLR 365

Query: 345 TIGWMHNRLRMITASFLVKDLLVDW 369
             G +HN LRM+ A  +++      
Sbjct: 366 REGMIHNYLRMLWAKKILEWTEHPR 390


>gi|76157554|gb|AAX28442.2| SJCHGC08270 protein [Schistosoma japonicum]
          Length = 165

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
             M V L W+  D R+ DN A   A   +      +   F   P+   +     R   F+
Sbjct: 80  IKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAET---LRHYTFM 135

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDD 89
              L +V+K   +  I F     S+  D
Sbjct: 136 IEGLKEVEKECRELCIPFHITSASSIPD 163


>gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
 gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
          Length = 499

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 130/428 (30%), Gaps = 40/428 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W+    R+  N +L  A   +      + I    +      S R   FI A +   +
Sbjct: 25  ALYWMTACRRVHWNYSLDRAVEWALKLNKPLVILEALRTGYPWASDRFHGFIMAGMRDNR 84

Query: 70  KSLSQKGIVFQ--YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +L  + +++        N D  +    +      VT  F             + L  RL
Sbjct: 85  AALKDRNVLYYPYVAPDENADKGLLEALALKAAIVVTDDFPAFFLPNMIRSAAETLTVRL 144

Query: 128 QH-----------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           +                 +   S        L   L      +  +   ++N  ++ +  
Sbjct: 145 EQVDGNGILPIADTDRIFTTAYSFRRFLQKNLIPHLCAPPKASALKGRSLKNPSRSLVEE 204

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQR 234
           +             +       YP   I P  P   G    L +L++F    + +Y + R
Sbjct: 205 IQKKWPPAPLNDLNATPLNLNPYPIDHIIPPVPGEGGAVRGLRMLKRFIMSGLPHYADGR 264

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNE--- 284
           + P    TS LSPYL  G +SP Q ++         +++  +  +  +   +  ++E   
Sbjct: 265 NQPDQPVTSGLSPYLHFGHVSPHQVFHEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAE 324

Query: 285 ------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTG 332
                 + WRE   ++               W        +            ++   T 
Sbjct: 325 AFLDQLITWRELGFNMCRHDEKYDRYASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTH 384

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNN 389
             + +AA  QL   G +HN LRM+    ++          +          LDG   ++ 
Sbjct: 385 DSLWNAAQNQLVREGRIHNYLRMLWGKKILHWSASPREALDIMIRLNNRYALDGRDPNSY 444

Query: 390 GGWQWAAS 397
            G  W   
Sbjct: 445 SGIFWVLG 452


>gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
 gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
          Length = 467

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 118/422 (27%), Gaps = 26/422 (6%)

Query: 23  NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           N AL  A   ++   + + +               + R   F+   L     +L ++GI 
Sbjct: 36  NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANERHYAFLLQGLADAAAALDRRGIA 94

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
           F   + +    +I+  +   L          ++     + R+           +    + 
Sbjct: 95  FLVRRGTPAQVAIDLSEKAALLVLDRGYLAIQKNWYGAIEREAKCRVVQVEGDVVVPVET 154

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
           +      +      ++ K++  + + L    V      L        G            
Sbjct: 155 ASAKHEYAARTLRPKLQKLWDDYLEPLEPRAVDHPAEGLIERLKLKDGLDVSDPDTLLAK 214

Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                       F  G   A   L  F K+    Y   R+ P     S +SPYL  G +S
Sbjct: 215 LKLDTTVGPVKRFRGGHTEAAERLDSFLKDAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311
           P                     +      ++ RE   + +            +P      
Sbjct: 275 P---VETALAIRAAEGADRDDRSAYLEELIVRRELAMNHVFHTEGYDDYARAVPEWARKT 331

Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                 +     +  +   +G T     + AMR++   G+MHN+LRM     +++     
Sbjct: 332 LAEHADDARPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391

Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420
                          LDG  A++     W     +       IF     Q +    +FD 
Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRPIFGSVRYQSENSLRKFDA 451

Query: 421 QG 422
           + 
Sbjct: 452 KA 453


>gi|311743861|ref|ZP_07717667.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312991|gb|EFQ82902.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
          Length = 416

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++SPY+  G+L     W+ + +               + +EL+W+E+ RHL A   +  
Sbjct: 75  SRMSPYIRHGLLDLPTVWDAVTDAPAS-------DRRRYRDELLWQEYARHLYARLGTAT 127

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                                    Q         A  R+L   GW+ N+ RM  AS   
Sbjct: 128 AEPLRFDPPRPAADP----------QWDEQMACTAAVRRELKDDGWLVNQTRMWWASHWT 177

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
                 WR GE+ F   LLDG  A+N  GWQW   TG    PY
Sbjct: 178 VRHGRHWRDGEDDFFRHLLDGSRAANRLGWQWTVGTG-TGKPY 219


>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
 gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
          Length = 1113

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 121/370 (32%), Gaps = 13/370 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+ L  D RI DN +L  A   +  K   +F A     R+     R        L  +++
Sbjct: 633 LLLLTRDFRINDNWSLIYAYEKAKKKKAHLF-ACTYLNRKEPFPKRHIDIKLKVLKNLEE 691

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++ +   I F        D+ +E+L  Y ++  +    +N   E     ++ +    ++ 
Sbjct: 692 NMKKILNIPFYLLTIYMIDEFMEFLRIYDIKTIICD--FNPLNETRIFIQNLVELSNIKK 749

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             I +    +++    +          +    +  +   L++     +    I+   P +
Sbjct: 750 IKILQVDSHNIVPIWITSKIEESCARTIKPKIQTHISTFLIEYVQLEMFDQIIKYPEPFS 809

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPY 248
            S + +           +  +  +   H + +    K       +++ P  +  + L+PY
Sbjct: 810 ISEVFKKLTVYIPCPVLLNFVCTEQKAHEILQNFCSKKLERYSLKKNDPNSEMINLLTPY 869

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN--ELIWREFYRHLMAFYPSVCMGKP 306
           ++ G++S ++C   + +                 +   ++ +E   +   +  +      
Sbjct: 870 INFGIISSQRCVLEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDNFNG 929

Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W          +  +  +    +K   T   + +    QL   G +H  LRM     
Sbjct: 930 GKDWAKDSLKKHDSDKREYLYDFDDFKNAKTHDDLWNCCQLQLINEGIIHEFLRMYWCKK 989

Query: 361 LVKDLLVDWR 370
           ++        
Sbjct: 990 ILNWSGNSKT 999


>gi|152967990|ref|YP_001363774.1| deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
 gi|151362507|gb|ABS05510.1| Deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
          Length = 371

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  G+L     W    +       K       + +EL+W+E+ RHL        
Sbjct: 41  TRLSPYVRHGLLPLPTVWAAAGDAPARDRAK-------FRDELLWQEYARHL-YARLGPA 92

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P            +                +     +L+  GW+ N+ RM  AS   
Sbjct: 93  TARPLRFAAPVPAQPWEREPWPQ------DMACVATTTAELHEEGWLVNQTRMWLASQYS 146

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
                DWR G       LLDG  A+N  GWQWA  TG 
Sbjct: 147 VRAGADWREGAREMYRHLLDGSPAANRLGWQWAVGTGT 184


>gi|220918322|ref|YP_002493626.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956176|gb|ACL66560.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 486

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 112/432 (25%), Gaps = 47/432 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V L W+ +  R   N AL  A          V +  P +      S R   F+   +  
Sbjct: 21  AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVVEPLRCGYPHASDRLHAFLLEGMRD 80

Query: 68  VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              +L        +   +    D  +E L +     R   +  +        +       
Sbjct: 81  NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135

Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           RL  R+        V     G     A    +         +  L   D  +   P    
Sbjct: 136 RLDVRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPTWLDRLPAEDPLARAPPPWGA 195

Query: 185 TGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           + PV                             + P    G   A   L  F +E +  Y
Sbjct: 196 SVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLREGLDGY 255

Query: 231 VEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284
            E+R+ P     +S LSP+L  G +S  +    +            +             
Sbjct: 256 AERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVATPPRGARAGWWALS 315

Query: 285 ----------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------Q 328
                     L WRE      A  P          W         +    A         
Sbjct: 316 PSAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAALEA 375

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDL 385
             T  P+ +AA RQL   G +H  LRM+    +++                    LDG  
Sbjct: 376 AETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDGRD 435

Query: 386 ASNNGGWQWAAS 397
            ++  G  W   
Sbjct: 436 PNSVAGIAWCLG 447


>gi|187478088|ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422674|emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 407

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
              W+ EL WR +++H+             +    + +    + +     +  TG P+ID
Sbjct: 74  QHRWVMELGWRAYFQHVWDARGDDIFAS--LRPGPRPDEAYATEMPPDICEARTGLPVID 131

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            A+R L   G++HN  R+  AS++V    V WR   ++ +  LLDGDL SN+  WQW A 
Sbjct: 132 LAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGSNHLSWQWVAG 191

Query: 398 TGNDSVPY 405
           T   + PY
Sbjct: 192 T-ASAKPY 198


>gi|197123524|ref|YP_002135475.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
 gi|196173373|gb|ACG74346.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
          Length = 486

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 113/432 (26%), Gaps = 47/432 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V L W+ +  R   N AL  A          V +  P +      S R   F+   +  
Sbjct: 21  AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVLEPLRCGYPHASDRLHTFLLEGMRD 80

Query: 68  VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              +L        +   +    D  +E L +     R   +  +        +       
Sbjct: 81  NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135

Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           RL  R+        V     G     A    +       A +  L   D  +   P    
Sbjct: 136 RLDVRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPAWLDRLPAEDPLARAPPPWGA 195

Query: 185 TGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           + PV                             + P    G   A   L  F ++ +  Y
Sbjct: 196 SVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLRDGLDGY 255

Query: 231 VEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284
            E+R+ P     +S LSP+L  G +S  +    +            +             
Sbjct: 256 SERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVAAPPRGARAGWWALS 315

Query: 285 ----------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------Q 328
                     L WRE      A  P          W         +    A         
Sbjct: 316 PSAEAFLDQLLTWRELAFVTCAHVPDHRAYASLPAWARATLARHAADPRPASYGRAALEA 375

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDL 385
             T  P+ +AA RQL   G +H  LRM+    +++                    LDG  
Sbjct: 376 AETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSPTPEEAHATMLELNDRHALDGRD 435

Query: 386 ASNNGGWQWAAS 397
            S+  G  W   
Sbjct: 436 PSSVAGVAWCLG 447


>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
          Length = 499

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 144/451 (31%), Gaps = 40/451 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  + R  DN  L  A + ++   + + +         G  AR   F+   L  +  
Sbjct: 33  VYWMLREQRAQDNWRLIHAVNEANKMNVPIAVTFNLFDAFKGAKARHLGFMLRGLKLLHS 92

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  + + F   Q     + +E +  + ++   + L  +        +  + L K +   
Sbjct: 93  NLLLQHLPFFLFQ----GEVVETIPKFLIECGASLLVTDFSPLREIRKYKEELCKIIDDS 148

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------QADLRSLPVPAI 182
           V     D   ++P     +      +        L+   +                 P I
Sbjct: 149 VSIHEVDAHNVVPVWEASSKLEYGARTIRSKINKLLPTYLIDFPTLTSPNQRWPSSPPDI 208

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG- 241
              G +                +P      +  +     F  +++  Y   R+IP     
Sbjct: 209 DWDGLIEERIKQGAEVPEIDWCEPGETAALEVLMGEKDGFLTKRLKKYGTDRNIPLKPRA 268

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSPYL  G +S ++C     E      + P+S        ++ RE   +   + P  
Sbjct: 269 LSGLSPYLHFGQISAQRC---ALEARQVRKLSPESVDTFLEELIVRRELADNFCYYQPHY 325

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              K    W  K   +  S   +         +  T  P+ +A+  ++ T G MH  +RM
Sbjct: 326 DSIKGAWDWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQMEMVTFGKMHGFMRM 385

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDLA----SNNGGWQWAASTGNDSVPY----- 405
                +++         E      L D  ++A    +   G  W+   G     +     
Sbjct: 386 YWPKKILEWTNGPEEALE--IAIYLNDKYEIAGRDPNGYVGCMWSI-CGIHDQGWKERPV 442

Query: 406 ---FRIFNPTIQGKRFDPQG--TFIRHWLPE 431
               R  N     ++FD  G  ++I+  + E
Sbjct: 443 FGKIRYMNYAGCKRKFDVDGYISYIKKLVGE 473


>gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 467

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 112/371 (30%), Gaps = 29/371 (7%)

Query: 19  RITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
           R   N+AL  A   ++   A ++ VF            + R   F+   L +++ +L ++
Sbjct: 50  RTRWNEALEYAVDRANDRRAPLVVVFC---STATYPEANERHVGFMLEGLCEMRATLGKR 106

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
            I F+   C+  + ++   +                  +  +R  +    R     + + 
Sbjct: 107 RIAFEAFACAPPEAALAASERAIE-------VVTDSGYLRLLRAWRDDLARRATCAVTEI 159

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
             + V+   G     A      + P   A ++   +           RL           
Sbjct: 160 ETECVVPQLGQGARRAEPSAATFRPKVLARVREFTRNACAKTVDKYERLPLERGVDACLN 219

Query: 196 FFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             D      DP  P          +    +     K  +  Y   R+ P +   S LSP+
Sbjct: 220 VLDAYGLKRDPSCPRVSSHVGGESRAKAKLDVFLTKNMLSRYHHSRNDPCLCLQSHLSPH 279

Query: 249 LSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           +  G +S  +   +    ++   D      S        ++ RE   +     P      
Sbjct: 280 IHYGQISVVEVARKALAFRDAHADEADICASVDVFLDELIVRRELAVNFALRNPKYDSYD 339

Query: 306 PFIPWTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               W  +                + ++ G T   + +A+ R+L + G  HN LRM    
Sbjct: 340 GLPEWARETLERHRGDRREWTYTLEEFEHGRTHDKLWNASQRELVSSGKQHNYLRMYWGK 399

Query: 360 FLVKDLLVDWR 370
            +++       
Sbjct: 400 KILEWSSTPEE 410


>gi|283851297|ref|ZP_06368579.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
 gi|283573247|gb|EFC21225.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
          Length = 462

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 131/437 (29%), Gaps = 29/437 (6%)

Query: 11  LVWLRNDLRITDNK---ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++W+  D R  DN       A    + A + A+F   P+       +AR + F+   L  
Sbjct: 22  VLWMGRDQRADDNWALLHAAALAKAAGAPLFALFALPPDF---PPATARHADFLLRGLAA 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+ +L   GI           D    + ++  + R      +           + +    
Sbjct: 79  VETALRDHGIPL----ALVPGDPAVAVPAFLRRVRAGVCVTDFDPLRPGRAAREAVATAP 134

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D   ++P              + P    L+   ++         A  L G 
Sbjct: 135 VWDGALLEVDAHNVVPAFVASAKREYAAATFRPKILKLLPEFLEPFPDLPAFAAGNLAGF 194

Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                          P  A       G + A   L  F  +++  Y ++R+ P    TS 
Sbjct: 195 APVDWEAARAGLVLDPSVAPVAGITPGPEAAREALAAFLADRLPAYADRRNDPNAGATST 254

Query: 245 LSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSP+   G L+P R   + L+ +               +   +   +  H  A+     +
Sbjct: 255 LSPWFHHGHLAPQRAALDALEAKKRAPAGAEAFLEELVVRRELADNYCLHEPAYDTLAAL 314

Query: 304 GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                        +   +   A  ++   T   + +AA RQL   G +H  +RM  A  +
Sbjct: 315 PAWAQKTLGAHAADPRPYRYTAREFETAATHSALWNAAERQLVRQGRLHGYMRMYWAKKI 374

Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFN 410
           ++                    LDG   S   G  W+   G    P+         R  N
Sbjct: 375 LEWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVG-GLHDRPWASRPVFGQIRYMN 433

Query: 411 PTIQGKRFDPQGTFIRH 427
                ++FD    +I  
Sbjct: 434 ARGCRRKFDVDA-YIAR 449


>gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich]
          Length = 200

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYAS 64
            V L W+  D R+ DN AL  A   +    I +   F   P+    H  ++R   F+ + 
Sbjct: 37  KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKF---HTTTSRHFMFLISG 93

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V +                +      +     + RV  +  +        R  K   
Sbjct: 94  LKEVAEECK----RLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTV 149

Query: 125 KRLQHRVICKSFDDSVLLPPGS 146
             L   +     D   ++P   
Sbjct: 150 ISLPDNIPFIQVDAHNIVPCWE 171


>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
 gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
          Length = 453

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 120/396 (30%), Gaps = 29/396 (7%)

Query: 16  NDLRITDNKALYAA-----CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
            DLR+ DN +   +      +NS   V+ +        + + I+ RQ  F+Y  L + + 
Sbjct: 30  RDLRVYDNWSFLYSQNIAYLNNSSMYVLYL------INKNNNINIRQYKFLYEGLPEFES 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  + F     +N         ++  + ++  +   +   +   +      K+L   
Sbjct: 84  QCKKCNVSFHLLSYNNNII-----SNFINKYKIGHVIIEQMPLLFHKKYYLDPLKKLNVN 138

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V      + + +   S               +      +    ++   +  I +      
Sbjct: 139 VYIVDSHNIIPVWVTSDKQEYNARTIRIKINKLKDQYLIEFPKVKISNIQPIFVENNFDI 198

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                        I      G  N ++ +  F K K+  Y ++++ P  + TS LSP+L 
Sbjct: 199 IPNYDKKLINIYEIV----GGYTNGINRMNNFFKNKINTYKDKKNNPNYENTSILSPWLH 254

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G++S ++C     +         +S         I +E   +   +  +         W
Sbjct: 255 CGMISAQRCVLEANKLKKIKDYNIESIDSFIEEIFIRKELSDNFCYYNNNYKSFASCPNW 314

Query: 311 TEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                    +            + G T   + +     L   G+++  +RM  A  L++ 
Sbjct: 315 AILTLEIHKTDKRNKIFSLRELEYGKTDNKLWNYCQYYLLKFGYLNGYMRMFWAKKLIEW 374

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
                   ++          DG          W+  
Sbjct: 375 TNSPQDAIDKTIYLNDKYFFDGYDPMGYVNILWSIG 410


>gi|332707770|ref|ZP_08427797.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L]
 gi|332353473|gb|EGJ32986.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L]
          Length = 67

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ 50
          L+W RNDLRI D++ LY A     A++I ++     Q+  
Sbjct: 27 LIWYRNDLRIHDHEPLYQAVQE-KAQIIPLYCFDDRQFGT 65


>gi|332368588|gb|AEE61369.1| cryptochrome 3 [Oncorhynchus kisutch]
          Length = 50

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            F   LLD D + N G W W + +      +F  + P   G+R DP G +I
Sbjct: 1   VFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYI 50


>gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 468

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 110/389 (28%), Gaps = 28/389 (7%)

Query: 16  NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFIYASLLQVQK 70
            D+R  DN AL  A          +  V+   P       ++   R   F+   L  V  
Sbjct: 3   RDVRTVDNWALLFAQSLAVQQKVPLRVVYALPP----PPSMALTVRHGTFLLDGLKVVAN 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYC--LQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L +  + F     S+  +  + + ++C         +  +        +  +     L 
Sbjct: 59  ELQEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLL 118

Query: 129 H-------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                   +V   +     +  P   +       K++  F     Q         +    
Sbjct: 119 EGDDIPLYQVDTHNIVPVWIASPKREVGARTLRPKIHNVFGDYCCQFPKFQGNAHVKESG 178

Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               G +   +   F +          ++    +  +   +           +   + D 
Sbjct: 179 AEGKGGLDWDDYESFLNMDHSVPHVGGMNAGHQVAMERFNNFCSSTQYGLKNFDSLRNDP 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSP+++ G +S ++    ++                 +   +   F  +   
Sbjct: 239 NHQSVCSNLSPWINHGHVSFQRLALDIRALKKHTNGTAAYIEEGVVRRELSDNFVYYTPD 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRL 353
            Y S+     +   +  +  + +   L  WK+     T   + +AA  QL   G MH  +
Sbjct: 299 GYDSLAGAADWARDSLTLHADDERENLYTWKELEKAETHDDLWNAAQLQLVREGGMHGFM 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           RM  A  +++                L D
Sbjct: 359 RMYWAKKVLEWTSSPAYALA--TAQYLND 385


>gi|86159449|ref|YP_466234.1| deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775960|gb|ABC82797.1| Deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 490

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 109/427 (25%), Gaps = 43/427 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ +  R   N AL  A     A    V +  P +      S R   F+   +     
Sbjct: 28  LHWMTSARRTRSNPALERAAELGRALGRPVLVLEPLRCGYPHASDRLHAFLLEGMRDNAA 87

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+ +  ++         +    LD+   +     +  +                RL  R
Sbjct: 88  ALAGR-ALYHPWVERRAGEGDGLLDALAAR--ACAVIADDFPTGFPAAAIGAAAARLDVR 144

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181
           +        V     G     A    +       A +  L   D  +   P         
Sbjct: 145 LEAVDASCVVPFRLAGKDFPTAHAYRRHLQRALPAWLDRLPAEDPLAGVPPPGGASVPAE 204

Query: 182 ------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                       +               + P    G   A   L  F ++ +  Y E+R+
Sbjct: 205 IRRRWPAARAAELARPAALAAALPIDHRVPPAGRGGSVAARRRLSAFLRDGLDAYAERRN 264

Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE---------- 284
            P      S LSP+L  G L   +    +            + A                
Sbjct: 265 APDEARGASGLSPWLHFGHLGSFEILRAVLRREGWTPPPVAAPARGARAGWWGLSASAEA 324

Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGF 333
                L WRE      A  P          W         +    A           T  
Sbjct: 325 FLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAALEAAETHD 384

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390
           P+ +AA RQL   G +H  LRM+    +++                    LDG   ++  
Sbjct: 385 PLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDGRDPNSVA 444

Query: 391 GWQWAAS 397
           G  W   
Sbjct: 445 GIAWCLG 451


>gi|148239607|ref|YP_001224994.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. WH 7803]
 gi|147848146|emb|CAK23697.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 7803]
          Length = 495

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 124/424 (29%), Gaps = 53/424 (12%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWR---QHGISARQSHFIYA--SLLQVQKSLSQK 75
            D+ AL+        + +A+ I  P  +    Q  I   +   +    S+    ++L  +
Sbjct: 13  ADHPALH------KGRAVAL-IEDPLLFGTDPQWPIQVHRQRLLLHRASMTAYAETLRAQ 65

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
           G    Y +     ++ E L +      V+    +   ++ E R  + + +      I  S
Sbjct: 66  GYTVFYRRHHQASNTEEHLQALRASGFVSFYLADPVDDLLEKRLRQFVARSGGDLRILDS 125

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALI---------------QNLVQADLRSLPVP 180
                            +   +   +                    Q    AD R     
Sbjct: 126 PMLLTPASMVEEHFAGGRKPFMAKFYEHQRRRMGLLLDDNGGPLGGQWSFDADNRKKLPK 185

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            I +                 +      P              ++   +     D     
Sbjct: 186 GISVPSEPCHHGDAEIDQARRELETETLPFIGNWDFFSYPIRHEDADRWLQIFLDQRFRD 245

Query: 241 ---------------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
                            S L+P L++G+L+P+Q  +R  E   D  I   S        +
Sbjct: 246 FGAYEDAISTQHRVMWHSVLTPMLNVGLLTPQQVIDRTLERAADGDIPLNSLEGFIRQIV 305

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREF   +   +        F  + ++        +  A+  G TG P +D A+     
Sbjct: 306 GWREFMAVMYRRHGVAMRKSNFWEFEDRP-------IPDAFYTGTTGLPPVDDAIHHALA 358

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNN-GGWQWAASTGND 401
            G+ H+  R++    ++       +   ++FM   +D  D     N  G  Q+A      
Sbjct: 359 HGYCHHIERLMLLGNIMLLCGFHPQRVYQWFMELFVDAYDWVMVPNVFGMSQFADGGLFT 418

Query: 402 SVPY 405
           + PY
Sbjct: 419 TKPY 422


>gi|87124470|ref|ZP_01080319.1| photolyase protein family protein [Synechococcus sp. RS9917]
 gi|86168042|gb|EAQ69300.1| photolyase protein family protein [Synechococcus sp. RS9917]
          Length = 482

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 122/410 (29%), Gaps = 37/410 (9%)

Query: 21  TDNKALY--AACHNSDAKVIAVFIA--TPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
            D+  L    A    +  ++        P    Q     ++      SL   ++ L   G
Sbjct: 14  ADHPGLAPGRAVVLVEEPLL----LGTDPSWPLQLH--PQKLALHRHSLEAYRRRLETAG 67

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
              +  +      + + L     Q        +   +  E R  +   +         + 
Sbjct: 68  HPVRLQRHDQAASTDDHLALLLAQGVRHLHLVDPVDDWLERRIRRWSAREGLRLTWYATP 127

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------------QADLRSLPVPA 181
                +  G+      +   +   + +   +  V                AD R      
Sbjct: 128 MLLTPVEEGAAFLARGKKPSMARFYERQRRRLGVLIDPQGQPVGGRWSFDADNRKKLPKQ 187

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           I+L               P   + P+   G +  L        ++   Y +         
Sbjct: 188 IQLPPNPLHPLGADPQADPETCLVPIDHSGAERWLDAFLAQRLQQFGAYEDAISREHHVL 247

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S L+P L+IG+L+P+Q  +R         +   S        + WREF   +   +  
Sbjct: 248 WHSVLTPMLNIGLLTPQQVLDRTLARAEAGDVPHNSLEGFVRQIIGWREFMALMYRHHGV 307

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F    ++        + +A+  G TG P IDA ++++   G+ H+  R++    
Sbjct: 308 TLRNGNFWGLEDRP-------IPEAFSTGDTGLPPIDAVIQRVRRSGYCHHIERLMLLGN 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
           ++            +FM   LD  D     +  G  Q+A      + PY 
Sbjct: 361 VMLLCGFHPTRICNWFMELFLDAYDWVMVPNVYGMSQFADGGLFTTKPYV 410


>gi|86137238|ref|ZP_01055816.1| photolyase protein family protein [Roseobacter sp. MED193]
 gi|85826562|gb|EAQ46759.1| photolyase protein family protein [Roseobacter sp. MED193]
          Length = 497

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 125/426 (29%), Gaps = 54/426 (12%)

Query: 21  TDNKALYAACHNSDAKVI---AVFIATPEQWRQHGISARQSHFIYA-SLLQVQKSLSQKG 76
            D+ AL     +    V+    +F   P+   +     RQ  +++  S+   Q++L + G
Sbjct: 14  ADHPALLDPVRDV---VLFEDPLFFGDPQYPARMH---RQKLWLHRASMAHYQQALVKLG 67

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-------LQH 129
           +  +       + + + L     +Q +T +      +    +R +            L  
Sbjct: 68  LNAKIIPYDPQNGACQRLFQNLKEQGITTMVMADPVDFIAEQRIQESADATGIKLEVLPS 127

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                S + +     G       + YK        L++N      +       R   P  
Sbjct: 128 PGFLNSPEHNHEWYRGRKRWLMAEFYKAQRRRLDVLMENDKPLGGKWSLDTENRKKVPKA 187

Query: 190 PSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   ++P               +    IG    L+          ++    R    
Sbjct: 188 LLENLPLIEWPVHDDIDAVAKARVLSEFPHTIGSLEQLYYPTTQASAAAWFDQFLRQRFD 247

Query: 239 --------------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
                             + L+P L+IG+L+PRQ  +          I   S        
Sbjct: 248 RFGDFEDAIVAGESWLWHAMLTPVLNIGLLTPRQVLDTTLAYAERKDIPLNSLEGFLRQI 307

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           + WREF R   A                 +          ++  G TG   +D  ++++ 
Sbjct: 308 IGWREFMRATYADLGVTMRQTNHWGHHRPMPK--------SFYSGTTGIAPLDDTIQRVL 359

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGN 400
             G+ H+  R++     +    +D      +FM   +D  D     +     Q A     
Sbjct: 360 ATGYCHHIERLMVLGGFMFLCEIDPDAVYRWFMEMFVDSYDWVMVPNVYAMSQHADGGLI 419

Query: 401 DSVPYF 406
            + PYF
Sbjct: 420 TTKPYF 425


>gi|302834309|ref|XP_002948717.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
           nagariensis]
 gi|300265908|gb|EFJ50097.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
           nagariensis]
          Length = 751

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 11  LVWLRNDLRITDNKALYA-----------ACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           ++W RNDLR+ D+  L A               S   +  VF+  P +      +     
Sbjct: 76  VLWYRNDLRVDDHPGLTAAAVAVGAAGPSGTSASPRPLAPVFLLDPVRLSYLAFTPGGPE 135

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
            + A+L +++  L  +G        S        
Sbjct: 136 ALSAALERLRAELRVRGSDLAIRVGSWEQQLTAV 169


>gi|15824993|gb|AAL09564.1|AF363633_1 cryptochrome 2 [Coturnix japonica]
          Length = 49

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           W R  LR+ DN AL AA   + A +  ++I  P       +   +  
Sbjct: 3  HWFRRGLRLHDNPALQAALRGA-ASIRCIYILDPWFAASSAVGINRWR 49


>gi|172037665|ref|YP_001804166.1| putative deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC
           51142]
 gi|171699119|gb|ACB52100.1| putative Deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC
           51142]
          Length = 501

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 115/388 (29%), Gaps = 34/388 (8%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL + C N+  +   +FI +    ++     ++   +++++    + LS +G    Y  
Sbjct: 17  AALLS-CKNNKQETPVIFIESHNYIQKRPYHQQKLVLVFSAMRHFAEELSSQGWQVSYKV 75

Query: 84  CSNFDDSIE------WLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKS 135
             +F+ ++        +    +     + F  R      +   +       L      K 
Sbjct: 76  AHDFESALNNWIKENKITELRVVSPCDRPFLRRIQSFKLDCKTKFISNNHFLWSNEEFKQ 135

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           ++DS             +            I +    D ++   P   L  P      P 
Sbjct: 136 WNDSRKRLLLEDFYREGRKRFNILMDEDQPIGDKWNFDKQNRKPPKQNLNPPTPLWFEPD 195

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRK-----------------FCKEKVYYYVEQRDIPA 238
                       + I     +   +                         Y         
Sbjct: 196 AITEQVIKDIKSYKIASYGKIEPFKWGVTRSQALQVLDHFLENNLNNFGAYQDAMITGEY 255

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S +SPY+++G+L+P +   ++++ + +      S        L WRE+   +    
Sbjct: 256 TMWHSLISPYINLGLLTPLEVIQKIEKAYHEFDYPLNSVEGLIRQILGWREYMYGIYQLM 315

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 K +    E +           W    T    +   ++Q+   G+ H+  R++  
Sbjct: 316 DDDYRDKNWFDHQENLPAFY-------WDSSQTDMNCLKQILQQVEETGYAHHIQRLMVL 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
           S     + V  +   ++F S  +D  D 
Sbjct: 369 SNFALIIGVSPQAINDWFHSAFIDGYDW 396


>gi|331227642|ref|XP_003326489.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309305479|gb|EFP82070.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 251

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 4  TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
          ++ +S  L W   DL + D+ AL  A      ++  V+   P       +   +  F++ 
Sbjct: 2  SSKLSKLLYWFWTDLHVHDSPALIKALELGRVELYPVWCWDPYYIYNTPVGPNRWQFLFQ 61


>gi|71083008|ref|YP_265727.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062121|gb|AAZ21124.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 496

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPY+++G+++P     ++ E      I+  S        + WREF R +   Y  
Sbjct: 262 FHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWREFMRGIYQGYSD 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K F              + ++W +G TG P +D A++     GW H+  R++  S 
Sbjct: 322 EMETKNFFNHER--------KMKKSWYEGTTGLPPLDHAIKNAVNHGWSHHIERLMILSN 373

Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382
           ++    V   I  ++FM   +D
Sbjct: 374 IMNLCEVKPTIVYKWFMEMFVD 395


>gi|116074855|ref|ZP_01472116.1| photolyase protein family [Synechococcus sp. RS9916]
 gi|116068077|gb|EAU73830.1| photolyase protein family [Synechococcus sp. RS9916]
          Length = 495

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 82/263 (31%), Gaps = 12/263 (4%)

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            Q    +  V        +    +P                 +      L +  +    Y
Sbjct: 190 PQEPTCTPFVDHATTLAQLETEALPLIGVSKDCLYPIDHQGAQDWLDRFLEERFEHFGDY 249

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
                    +     L+P L+IG+L+P Q   R  E      I   S        + WRE
Sbjct: 250 EDAISRHHRVMWHGVLTPMLNIGLLTPEQVLRRALEAGESRSIPLNSLEGFVRQIIGWRE 309

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   +   +        F  +  +        L +A+  G TG P ID A+      GW 
Sbjct: 310 FMASMYQRHGRQMRTTNFWGFNNQP-------LPEAFYTGTTGLPPIDDAIHHALETGWC 362

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
           H+  R++    ++           ++FM   +D  D     N  G  Q+A      + PY
Sbjct: 363 HHIERLMLIGNVMLLCRFHPDRVYQWFMDLFVDAYDWVMVPNVYGMSQFADGGLFTTKPY 422

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
               N   +   + P+G +   W
Sbjct: 423 LSGSNYVRKMSDY-PKGDWCDIW 444


>gi|71403553|ref|XP_804566.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70867603|gb|EAN82715.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 398

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 16  NDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L      A       VIAV +     + Q          S  ++ F   S
Sbjct: 227 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 286

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L +++ ++ +                 E +    ++   T +F   QY  +E    
Sbjct: 287 LAKLRATIEE---ELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 339


>gi|54780882|gb|AAV40607.1| cryptochrome 2 [Erithacus rubecula]
          Length = 128

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            P +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 1   EPWNAPESVQKEAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 45


>gi|169656793|ref|YP_001715625.1| hypothetical protein FTA_2149 [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|164551861|gb|ABY60985.1| hypothetical protein FTA_2149 [Francisella tularensis subsp.
          holarctica FTNF002-00]
          Length = 49

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA 43
          M       + + W R DLR+ DN ALY      +   I +FI 
Sbjct: 1  MSKK----IAIHWFRQDLRLADNPALYQVSQADET--ITIFIL 37


>gi|323449922|gb|EGB05806.1| hypothetical protein AURANDRAFT_30135 [Aureococcus anophagefferens]
          Length = 73

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            W +G TG+P +DA MRQL   G M + LR + A+FLV+DL V WR G E+F + LLD  
Sbjct: 4   KWTRGATGYPFVDAGMRQLAAEGRMPHLLRQLCAAFLVRDLRVPWRWGAEWFEAHLLDHA 63

Query: 385 LASNNGGWQW 394
             +N G W +
Sbjct: 64  PDANYGNWGY 73


>gi|166365313|ref|YP_001657586.1| deoxyribodipyrimidine photolyase-related protein [Microcystis
           aeruginosa NIES-843]
 gi|166087686|dbj|BAG02394.1| deoxyribodipyrimidine photolyase-related protein [Microcystis
           aeruginosa NIES-843]
          Length = 507

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 97/380 (25%), Gaps = 35/380 (9%)

Query: 32  NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
             +  VI   I +    RQ     ++  FI++++    + L   G    Y    +F+  +
Sbjct: 26  AQETPVIL--IESHNHIRQRPYHQQKLVFIWSAMRHFAEELKTLGWSVTYEVAEDFEPIL 83

Query: 92  EW-------------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR------ 126
                                         +               R             
Sbjct: 84  SAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCPITLIDNNHFLWTRTDFNNWAKSRKRL 143

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L      +S     +L   +        +                          +++  
Sbjct: 144 LLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTAAPLWFEPDEITLQVIA 203

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V   +IP++                Q   H +         Y             S LS
Sbjct: 204 DVEALDIPKYGKIKPFRWAVTRRQALQVLEHFITNCLPNFGPYQDAMITGEETLWHSLLS 263

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+L+P +     +  +    +   S        L WRE+ + +  +       + 
Sbjct: 264 PYLNLGLLTPLEVIQGAEIAYKKDNLALNSIEGFIRQVLGWREYMQGIYHYLGEDYANRN 323

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +    + +           W    T    +   + Q+   G+ H+  R++  S       
Sbjct: 324 WFEHQQPLPAFF-------WDSNQTEMNCLKQVLSQVENTGYAHHIQRLMILSNFALIFG 376

Query: 367 VDWRIGEEYFMSQLLD-GDL 385
              +  E +F S  +D  D 
Sbjct: 377 CSPQEIENWFHSVFIDAYDW 396


>gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
 gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
          Length = 488

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 110/406 (27%), Gaps = 24/406 (5%)

Query: 15  RNDL---------RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           R D          R   N AL AA    +   + V +    +      S R   +    +
Sbjct: 29  RRDFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIRPDYPHASDRLHAWALEGM 88

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT----KLFYNRQYEINEVRRDK 121
           + +    + +G+ +         +    L     +           Y     +    +  
Sbjct: 89  MDMATGCAARGLPYWLELPRTSKEHRPRLAQLGRRAAAIVSDLFPTYIIPGHLRGAAKAL 148

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180
            +                     G+                +A+    V+A      + P
Sbjct: 149 DVPLFAVDASCVVPMQRIATRQIGAYTLRPKLKKLWPEYLDRAVPNRAVKAAAAGRKLEP 208

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +           FD+           G +  L  L+ F  +++  Y E R+ P + 
Sbjct: 209 DFATSDARESRESLDAFDFDHSVAPIQERGGRKAGLDALQAFVHQRLEGYDEGRNDPGLA 268

Query: 241 GTSQLSPYLSIGVL--SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             S LSP+   G L                D  ++          EL +   +       
Sbjct: 269 RQSNLSPFFHWGNLFAGEAARAAIRARGAQDASVQGFLEELLVRRELGFNYCFHTPGPQQ 328

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            SV    P+   T             + KQ     T   + +AA R+L   G +HN LRM
Sbjct: 329 LSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTADGLWNAAQRELVERGRIHNYLRM 388

Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNGGWQWAAS 397
           +    +++         +          +DG D AS    + W   
Sbjct: 389 LWGKKILEWTPSPQEALQRIAFLNDKYAVDGRDPAS-VANFMWVLG 433


>gi|78184690|ref|YP_377125.1| photolyase family protein [Synechococcus sp. CC9902]
 gi|78168984|gb|ABB26081.1| photolyase protein family [Synechococcus sp. CC9902]
          Length = 505

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 11/175 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +     L+P L+IG+L+PRQ  +R  E      I   S        + WREF   + 
Sbjct: 266 YHRVMWHGVLTPMLNIGLLTPRQILDRTLEYSKKNDIPLNSLEGFIRQIIGWREFMAVMY 325

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F  + ++        +  A+  G TG P ID A++     G+ H+  R+
Sbjct: 326 RRHGVEMRNSNFWEFEDRP-------IPDAFYTGNTGLPPIDDAIKHALQTGYCHHIERL 378

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +    +++           +FM   +D  D     N  G  Q+A      + PY 
Sbjct: 379 MLVGNIMQLCGFHPNRVYVWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 433


>gi|213422521|ref|ZP_03355587.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVR 118
           E NE +
Sbjct: 61  EFNERQ 66


>gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila PT]
 gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta
           thermophila PT]
          Length = 114

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 34  DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           +A +  VF   P+     G   R   F+   L ++++ LS  GI F +       D    
Sbjct: 6   NASLAVVFCLAPQF---PGAGDRSYRFMLDGLRELEQRLSSLGIAFIF----THGDPGNV 58

Query: 94  LDSYCLQQRVTKLFYNR 110
           +           L  + 
Sbjct: 59  IPEIIDDSGAGMLIADF 75


>gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii]
          Length = 506

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/469 (13%), Positives = 126/469 (26%), Gaps = 80/469 (17%)

Query: 11  LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50
           + W+  D R+ DN                     AL+                     R 
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALF--------------------PRP 80

Query: 51  HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
             +SAR+    F+   L ++    + + + F        +     + +   +   + L  
Sbjct: 81  FLLSARRRQLGFLLRGLRRLAADAASRHLPFFLFTGGPAE-----IPALVRRLGASTLVA 135

Query: 109 NRQYEINEVRRDKLLEKRLQ-----------HRVICKSFDDSVLLPPGSILNHALQMYKV 157
           +             +   L+                     +      S      ++ KV
Sbjct: 136 DFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKV 195

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
              +     +              +     +                +P      +  L 
Sbjct: 196 MDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLG 255

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
               F  +++  Y   R+ P      S LSPYL  G +S ++C     E      + PKS
Sbjct: 256 SKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRC---ALEAKKCRHLSPKS 312

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGY 330
                   ++ RE   +   + P          W  K   +  +   +            
Sbjct: 313 VDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAK 372

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387
           T  P+ +A+  ++   G MH  +RM  A  +++                    +DG   S
Sbjct: 373 THDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPS 432

Query: 388 NNGGWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427
              G  W+    +D      P F   R  N     ++FD     ++++ 
Sbjct: 433 GYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|113955504|ref|YP_730566.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113882855|gb|ABI47813.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 468

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 115/358 (32%), Gaps = 14/358 (3%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            R+      S+L  QK L  KG             + + L+        T    N   ++
Sbjct: 45  PRKLQLHQESMLAYQKHLELKGFSVFTLTPKQNQQTSDLLNQLVDSGYKTFYLVNPIDDL 104

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              R    LE+R     +  +              +  +   +   ++    +  V  D 
Sbjct: 105 LSKRVRNTLERRHCVLNVLPTPMLLTPTEVMDEHFNGRRKPMMANFYQMQRKRLGVLIDD 164

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYV 231
           +  PV             +P+  + P +    +       +Q     L +       +  
Sbjct: 165 QGAPVGGRWSYDADNRKKLPKGINVPEEPSIDLPVDHRSAKQWLDTFLEQRLSGFGTFED 224

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
                  +   S L+P L++G+L+P+Q  N+         I   S        + WREF 
Sbjct: 225 AISSKHRVMWHSVLTPMLNLGLLTPQQVLNQTLAVAETSEIPLNSLEGFLRQIIGWREFM 284

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +   +        F  + ++        +  A+ QG TG P ID A+++    G+ H+
Sbjct: 285 AAMYLRHGVTMRNSNFWNFDDRP-------IPDAFYQGTTGLPPIDDAIKRALNTGYCHH 337

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
             R++    ++            +FM   +D  D     N  G  Q+A      S PY
Sbjct: 338 IERLMLLGNIMLLCGFHPTRIYTWFMELFVDAYDWVMVPNIYGMSQFADGGIFTSKPY 395


>gi|213983211|ref|NP_001135721.1| CPD photolyase-like [Xenopus (Silurana) tropicalis]
 gi|197246287|gb|AAI69177.1| Unknown (protein for MGC:189672) [Xenopus (Silurana) tropicalis]
          Length = 157

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A   +  + + +   F   P+         R   F+   L +
Sbjct: 94  VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDAT---IRHYGFMVKGLQE 150

Query: 68  VQKSL 72
           V + L
Sbjct: 151 VAEVL 155


>gi|238603470|ref|XP_002395956.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
 gi|215467586|gb|EEB96886.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
          Length = 114

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++     +   G   I        ++      AWK+G TGFP IDA MRQL   GW+H+ 
Sbjct: 1   YIDWHLQNQYDGDGKIIVPRPRGESQAEDRFLAWKEGRTGFPWIDAIMRQLRQEGWIHHL 60

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
            R   A FL +    + W  G E F   L+D D  SN G
Sbjct: 61  ARHSVACFLTRGQCYISWERGAEVFDEYLIDWDPCSNPG 99


>gi|91762569|ref|ZP_01264534.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718371|gb|EAS85021.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 445

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPY+++G+++P     ++ E      I+  S        + WREF R +   Y  
Sbjct: 211 FHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWREFMRGIYQGYSH 270

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K F              + ++W +G TG   +D A++     GW H+  R++  S 
Sbjct: 271 EMETKNFFKHNR--------KMKKSWYEGTTGLLPLDYAIKNAVNHGWSHHIERLMILSN 322

Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382
           ++    V      ++FM   +D
Sbjct: 323 IMNLCEVKPTTVYKWFMEMFVD 344


>gi|262277789|ref|ZP_06055582.1| photolyase protein family protein [alpha proteobacterium HIMB114]
 gi|262224892|gb|EEY75351.1| photolyase protein family protein [alpha proteobacterium HIMB114]
          Length = 494

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 112/362 (30%), Gaps = 48/362 (13%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTK-------- 105
           +  F  +S+   +  L Q G    YH+  +    DD ++ L +    +++          
Sbjct: 44  KITFFLSSMRSFKDELEQVGYKVIYHKIEDKEFKDDYVKKLANVIKNKKIKNVNFFEIED 103

Query: 106 ------------------------LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
                                   +F + + +                  I ++  + ++
Sbjct: 104 KPFEKKIVSYLKKEKVDYKILKTPMFLSSRDDFISYLGKSKKPFMANFYKIQRTKFNILM 163

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYP 200
              GS                   I+   Q   +       ++          P   +  
Sbjct: 164 NKDGSPKGGKWSFDSENRKKLPKDIKLPKQPIFKETEHTKKLKKIINEKFPKHPGDTNQF 223

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
           +            +     +          V+QRD       S LSP+++ G ++P++  
Sbjct: 224 WIGTTRKDAKLVLDNFLKDKLKLFGDYEDAVDQRDNILFH--SALSPFINNGSITPQEIL 281

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           + L +    + I    G       + WREF R +   +        F        +N  +
Sbjct: 282 DELTKFEKKVSINSYEGY--LRQVIGWREFMRGIYQNFDDKMQKSNF--------FNHKN 331

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            +  +W +G TG   +D A++      W H+  R++  S ++    ++ R   ++FM   
Sbjct: 332 KMKNSWYEGTTGLDPLDHAIKNAKDYAWSHHIERLMILSNIMNLCEIEPRQVYKWFMEMF 391

Query: 381 LD 382
           +D
Sbjct: 392 MD 393


>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
 gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
          Length = 502

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 121/431 (28%), Gaps = 47/431 (10%)

Query: 11  LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W    R   R + N +L  A   +      + I    + R    S R   FI   +  
Sbjct: 25  LYWMIAFRR--RRS-NFSLQRAVEWARELRKPLVILEAVRTRYEWASDRLHRFIIEGMQD 81

Query: 68  VQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQR--VTKLFYNRQYEINEVRRDKL 122
               L +    G+V+  +           L++   +    +T  F             + 
Sbjct: 82  NAHDLGELRQSGVVYHPYVEPTHGAGAGLLEALAKRAAVVITDDFPCFFLPQMTKVAARK 141

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  R++                 ++  H  +  +       A      +  L  + +PA+
Sbjct: 142 VPVRMETIDGNGILPMRAADKTFTMAFHFRRWLQKNLKPHLAEEAFPEEDPLARVKLPAL 201

Query: 183 RLTGPVTPSNIPRFFDYP------------FQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +          P                    ++ P   +G   +   + +   +     
Sbjct: 202 KKLPAEITERWPAADFKQLLGARGLAQLPIDHSVTPTSEVGGAASAARVLERFLDSRLSR 261

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSP---------RQCWNRLKEEFVDLLIKPKSGAFSW 281
             +R+ P     S LSP+L  G +S          R+ W+  K               S 
Sbjct: 262 YGERNEPDANAASGLSPWLHFGHVSVHDIARRALARESWSHAKLSAKTDGKAGAWWGVSA 321

Query: 282 LNE------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ------AWKQG 329
             E      + WRE   +  +   +    +    W +K                  ++  
Sbjct: 322 ACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTLDKHAVDPRPNLYTLDQFESS 381

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLA 386
            T   + +AA RQL   G +HN +RM+    +++                    LDG   
Sbjct: 382 TTHDLLWNAAQRQLVREGRIHNYMRMLWGKKILEWSTSPREALRIMIQLNNKYALDGRNP 441

Query: 387 SNNGGWQWAAS 397
           ++  G  W   
Sbjct: 442 NSYSGIFWILG 452


>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
 gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
          Length = 645

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 23  NKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIV 78
           N AL  A       D  ++AVF            + R   F+Y  L++++++L   +G+ 
Sbjct: 137 NDALEYAVQRANEHDVPLVAVF---GSTAGFPHANERHLAFMYQGLVELRETLERTRGVQ 193

Query: 79  FQYHQCSNFDDSIEWL 94
              +      +  E +
Sbjct: 194 LLAYTPVGGGEPGEVI 209


>gi|331239782|ref|XP_003332543.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309311533|gb|EFP88124.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 68

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
          M++   W   DLR+ ++ AL  A      ++  V+   P       +   +  F+ 
Sbjct: 1  MTLSRFW--TDLRVHESPALIKALELGPVELYPVWCWDPYYIYNTPVGPNRWQFLL 54


>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium chabaudi chabaudi]
 gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium chabaudi chabaudi]
          Length = 368

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 96/313 (30%), Gaps = 11/313 (3%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +++   +  I F        D+ +E+L     + +     ++      +   + +  
Sbjct: 31  LKNLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IQEIKTVVCDFHPLEYQKQFVENLVHM 88

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +   + +    +++    +          +    +  L   L++          I+ 
Sbjct: 89  SNKKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIEYIKLERFDQTIKY 148

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTS 243
             P    ++ +              +  +     + +   +        +R+ P     +
Sbjct: 149 PEPFDIESLYKKLTVNNSCSVISDFVCTEKKARDVLEDFCKNKLDKYGVKRNDPNYDTIN 208

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSV 301
            L PY+++G++S ++C   + +  +       S    + N+  LI +E   +   +  + 
Sbjct: 209 LLMPYINLGIISSQRCILEVNKYALQFPSIHTSSGKEYFNDDLLIKKELADNFCYYNKNY 268

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                   W ++     +            ++   T   I +    QL   G +H  LRM
Sbjct: 269 DNFNGAKDWAKESLKKHELDKRSHLYDYEDFRNARTHNDIWNCCQLQLVNEGTIHEFLRM 328

Query: 356 ITASFLVKDLLVD 368
             A  ++      
Sbjct: 329 YWAKKILNWSENS 341


>gi|159028913|emb|CAO90718.1| phr2 [Microcystis aeruginosa PCC 7806]
          Length = 516

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 100/380 (26%), Gaps = 35/380 (9%)

Query: 32  NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           + +  VI   I +    RQ     ++   I++++    + L   G    Y    +F   +
Sbjct: 26  SQETPVIL--IESHNHIRQRPYHRQKLVLIWSAMRHFAEELKTLGWSVTYEVTEDFGPIL 83

Query: 92  E-WLDSY-CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
             W+      + ++          + +          + +     +  D           
Sbjct: 84  SAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCAVTLIDNNHFLWTRTDFNNWAKSRKRL 143

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--- 206
                Y+      + L++N      +       R             +  P +       
Sbjct: 144 LLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTTAPLWFEPDKITLQVIA 203

Query: 207 ------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--------------GTSQLS 246
                 +   G+           +          +                     S LS
Sbjct: 204 DVEALDIPKYGKIKPFRWAVNRRQALQVLEHFITNCLPNFGTYQDAMVTGEETLWHSLLS 263

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+L+P +        +    +   S        L WRE+ + +  +         
Sbjct: 264 PYLNLGLLTPLEVIQGAAIAYKKDNLALNSIEGFIRQVLGWREYMQGIYHYLGEDYANHN 323

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +    + +           W    T    +   + Q+   G+ H+  R++  S       
Sbjct: 324 WFEHQQPLPAFF-------WDSNQTEMNCLKQVLSQVENTGYAHHIQRLMILSNFALIFG 376

Query: 367 VDWRIGEEYFMSQLLD-GDL 385
              +  E +F S  +D  D 
Sbjct: 377 CSPQEIENWFHSVFIDAYDW 396


>gi|282896501|ref|ZP_06304521.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9]
 gi|281198607|gb|EFA73488.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9]
          Length = 511

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/390 (12%), Positives = 111/390 (28%), Gaps = 34/390 (8%)

Query: 23  NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + AL           +I   I +    ++     ++   +++++    + L Q+G    Y
Sbjct: 16  HPALQELTIKRHQISIIL--IESMAYAQERPYHRQKLVLVWSAMRHFARELGQQGWQVTY 73

Query: 82  HQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
              + F  ++          +  + +       +             L + +      + 
Sbjct: 74  EIAAEFSSALTNWQQTHNITELWIMEPGDRPFIQFINQLNLTCSIHWLPNNLFLWKESEF 133

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
                G         Y+        L++       +       R     + ++    +  
Sbjct: 134 TQWARGRKRLLLEDFYREGRKRFNVLMKEGKPVGGQWNLDKQNRKPPKKSLASPSALWFP 193

Query: 200 PFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------------ 240
           P          +   FP G            + +    +       +             
Sbjct: 194 PDPTTQEVITHVRNHFPHGYGEVDTFKWAVTRSQSRRVLSHFLETHLPDFGPYQDAMVTG 253

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSPYL++G+L P +    ++EE+    +   S        L WRE+ R +  
Sbjct: 254 EDTLWHSLLSPYLNLGLLHPMEVIQAVQEEYNKHQLNLNSVEGFIRQILGWREYMRGVYM 313

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +     +      W +  +             G T    +   + Q++  G+ H+  R++
Sbjct: 314 YESKRDLNYTQRNWFDHNQPLPHWFW-----TGITDLNCLHQTLEQIHRTGYAHHIQRLM 368

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             S     L    +   ++F +  +D  D 
Sbjct: 369 LLSNFNLVLGTSPQSVVDWFHAVFIDAYDW 398


>gi|116070558|ref|ZP_01467827.1| photolyase protein family [Synechococcus sp. BL107]
 gi|116065963|gb|EAU71720.1| photolyase protein family [Synechococcus sp. BL107]
          Length = 495

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 11/175 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +     L+P L+IG+L+PRQ  +R  E      I   S        + WREF   + 
Sbjct: 256 HHRVMWHGVLTPMLNIGLLTPRQILDRTLECADKNNIPLNSLEGFIRQIIGWREFMAVMY 315

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F  + ++        +  A+  G TG P ID A++     G+ H+  R+
Sbjct: 316 RRHGVEMRNGNFWQFEDRP-------IPDAFYTGTTGLPPIDDAIKHALQTGYCHHIERL 368

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
           +    +++           +FM   +D  D     +  G  Q+A      + PY 
Sbjct: 369 MLLGNMMQLCGFHPNRVYVWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 423


>gi|294888807|ref|XP_002772597.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239876941|gb|EER04413.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 198

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F    L  
Sbjct: 28  IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +LSQ  I F       F   +  +      + V   F   +     V       KRL
Sbjct: 85  VAANLSQLNIPFAIEASPKFPAFLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144

Query: 128 QHRVICKSFDDSVLLPPGSILN 149
             R       + V     S   
Sbjct: 145 DIRFELVDAHNVVPCWVTSDKM 166


>gi|325285638|ref|YP_004261428.1| deoxyribodipyrimidine photolyase-like protein [Cellulophaga lytica
           DSM 7489]
 gi|324321092|gb|ADY28557.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           lytica DSM 7489]
          Length = 494

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S L+P L++G+++P++  ++  +      +   S        + WREF R +     +
Sbjct: 261 NHSVLTPMLNVGLITPKEIIDKALDYAKTNNVPINSTEGFVRQIIGWREFIRGMYITRGA 320

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 +  +T KI          ++  G TG P ID  +++L   G+ H+  R++  S 
Sbjct: 321 EERTTNYWKFTRKIPA--------SFYNGTTGIPPIDQTIKKLLQTGYCHHIERLMVLSN 372

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +     +     ++FM   +D  D     N  G  Q+A      + PY 
Sbjct: 373 FMLLCEFNPDEVYQWFMELFIDSYDWVMVPNVYGMSQFADGGLMATKPYI 422


>gi|254456383|ref|ZP_05069812.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083385|gb|EDZ60811.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 469

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPY+++G+++P     ++ +      I+  S        + WREF R +   Y  
Sbjct: 235 FHSALSPYINLGLITPELIIQKILDFHKKNKIRMNSLEGYIRQVIGWREFMRGIYQGYSE 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F              +  +W  G TG P +D A++     GW H+  R++  S 
Sbjct: 295 KMETGNFFKQNR--------KMKNSWYVGTTGLPPLDYAIKNAVNHGWSHHIERLMILSN 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382
           ++    +   I  ++FM   +D
Sbjct: 347 IMNLCEIKPTIVYKWFMEMFVD 368


>gi|238592825|ref|XP_002393022.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553]
 gi|215459875|gb|EEB93952.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553]
          Length = 74

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 7  MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57
          MS H  L W R DLR+  + AL+AA       +  ++   PE    H +   +
Sbjct: 1  MSKHRVLYWFRTDLRLHSSPALHAALSLQPEALYPIWTWDPEYVYAHRVGVNR 53


>gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis]
          Length = 506

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/466 (12%), Positives = 121/466 (25%), Gaps = 74/466 (15%)

Query: 11  LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50
           + W+  D R+ DN                     AL+                     R 
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALF--------------------PRP 80

Query: 51  HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
             +SAR+    F+   L ++    + + + F        +     + +   +   + L  
Sbjct: 81  FLLSARRRQLGFLLRGLRRLAADATARHLPFFLLTGGPAE-----IPALVRRLGASTLVA 135

Query: 109 NRQYEINEVRRDKLLEKRLQ-----------HRVICKSFDDSVLLPPGSILNHALQMYKV 157
           +             +   L+                     +      S      ++ KV
Sbjct: 136 DFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKV 195

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
              +     +              +     +                +P      +  L 
Sbjct: 196 MDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAMEALLG 255

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
               +  +++  Y   R+ P      S LSPYL  G +S ++C    K+          +
Sbjct: 256 SKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKRRHLSPKSIDA 315

Query: 277 GAFS--WLNELIWREFYRHLMAFYPSVCM-GKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                    EL     Y        S               +  +  +  +  +   T  
Sbjct: 316 FLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREHLENAKTHD 375

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390
           P+ +A+  ++   G MH  +RM  A  +++                    +DG   S   
Sbjct: 376 PLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGFV 435

Query: 391 GWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427
           G  W+    +D      P F   R  N     ++FD     ++++ 
Sbjct: 436 GCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|67920062|ref|ZP_00513582.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera
           watsonii WH 8501]
 gi|67857546|gb|EAM52785.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera
           watsonii WH 8501]
          Length = 501

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 112/388 (28%), Gaps = 34/388 (8%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL + C +   +   + I + +  ++     ++   +++++    + L  +G    Y  
Sbjct: 17  AALLS-CQDDKQETHVILIESHDYIKKRPYHQQKLVLVFSAMRHFAEELKTQGWTVTYEI 75

Query: 84  CSNFDDSI-EWLDS-------YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
             +F+  + +W+                      + ++++   +       L  +   K 
Sbjct: 76  SQDFETPLNDWIKKNKITELRLVTPYDKPFSSRVKSFKLDCKIKLIPNNHFLWTQEEFKQ 135

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           + DS             +            I      D ++   P   L  P      P 
Sbjct: 136 WTDSRKRLLLEDFYREGRKRFNILMEDNQPIGGKWNFDKQNRKPPKKGLNPPTPLQFEPD 195

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRK-----------------FCKEKVYYYVEQRDIPA 238
                       + I     +   +                         Y         
Sbjct: 196 KITQQVIKDIKSYKIPTYGKIKPFKWAVTRSQALQVLDNFIEHNLNNFGTYQDAMITGEY 255

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S +SPY+++ +L+P +    +++ + +      S        L WRE+   +    
Sbjct: 256 TLWHSLISPYINLSILTPWEVIKSIEKAYYEFDYPLNSVEGLIRQILGWREYMYGIYKIM 315

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 K +    EK+           W    T    +  +++Q+   G+ H+  R++  
Sbjct: 316 DDDYAQKNWFNHQEKLPEFY-------WDSSQTDMNCLKQSLQQVEETGYSHHIQRLMVL 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                 + V  +   ++F S  +D  D 
Sbjct: 369 GNFALIVGVSPQAVNDWFHSAFIDAYDW 396


>gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex]
          Length = 92

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   +  F+  SL  +  +L + G      + S      E    Y  +  + KL +  + 
Sbjct: 4   VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKES----PTEMFKKYFKEWNIKKLTFEVEI 59

Query: 113 EINEVRRDKLLEKRLQHR 130
           E     +D+ ++K   H 
Sbjct: 60  EPYAKTQDEEIKKLADHH 77


>gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex]
          Length = 179

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           +   +  F+  SL  +  +L + G      + S      E    Y  +  + K
Sbjct: 13  VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKES----PTEMFKKYFKEWNIKK 61


>gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium]
          Length = 150

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 9/76 (11%)

Query: 44  TPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
            P  + +           ++ F+  S+  ++K+L  +G                 L    
Sbjct: 1   DPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPETVLVELA 56

Query: 99  LQQRVTKLFYNRQYEI 114
                  ++ +R+   
Sbjct: 57  KAVGAEAVYAHREVSH 72


>gi|183221861|ref|YP_001839857.1| putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911933|ref|YP_001963488.1| deoxyribodipyrimidine photolyase-like protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776609|gb|ABZ94910.1| Deoxyribodipyrimidine photolyase-related protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780283|gb|ABZ98581.1| Putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 499

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 121/376 (32%), Gaps = 41/376 (10%)

Query: 40  VFIA-TPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSY 97
           VFI    E    +    ++  F + ++    + L   G    Y       +S E    ++
Sbjct: 29  VFIREDNELCTYYRFHKQKILFFFLAMRAYAEELKSLGFFVHYEHYDPNSESYENQFLNF 88

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
                + ++ +    +     R     ++   + I       +                 
Sbjct: 89  IQVNNIQEIHFFEIEDTFFETRMLSCFQKTGIKWIQHKSPMFLTSRNDFKAYLQTHKKPF 148

Query: 158 YTPFRKALIQNL------------------------VQADLRSLPVPAIRLTG---PVTP 190
              F +A  +                          +  +  +  +P I+ +        
Sbjct: 149 MKTFYEAQRKTFNILLNEKSEPIGGKWSFDSENRKKLPKNYCAPNLPKIKFSKNEIKTFD 208

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246
           +    F ++P    D   P   + A   L+ F KE+   +    D  ++       S L+
Sbjct: 209 TVDTHFPNHPGNTKDFWLPTDRKGAKLWLQDFLKERFVQFGPYEDAFSLDFPFLQHSVLT 268

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L++G+L+P++      +      +  +S        + WREF R +   + +      
Sbjct: 269 PFLNVGLLTPKEVIESTLDYAKKNSVPMESLEGFIRQIIGWREFIRGIYQNFGAKQESIN 328

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +              L + W  G TG P +D  +++ N  G+ H+  R++    L+    
Sbjct: 329 YFGHKR--------KLTKHWYDGTTGIPPLDFVIQKCNLYGYAHHIERLMVVGSLMVLFE 380

Query: 367 VDWRIGEEYFMSQLLD 382
           +D +    +FM   +D
Sbjct: 381 IDPKDAYRWFMEMFID 396


>gi|118773275|gb|ABL14181.1| cryptochrome 1 [Meleagris gallopavo]
          Length = 126

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            K  + +NYP P+V+H +A    + +     +Q
Sbjct: 7   AKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQ 39


>gi|145530798|ref|XP_001451171.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418815|emb|CAK83774.1| unnamed protein product [Paramecium tetraurelia]
          Length = 552

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 93/331 (28%), Gaps = 17/331 (5%)

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
              +     +  E L   C +  + +         +            + +    +    
Sbjct: 150 ILLKLGIQSEVKENLSYLCTRNDLQQYHKEHVKLKDGKPNYSHDSSFYRWQRRRLNILMG 209

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
                          Y             + +                VT      F D 
Sbjct: 210 PKGEDPE-----KWTYDSENRQPLKPGAKVPKKPDLIKSSYYDEAVSYVTKHFPKNFGDI 264

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
                       E+     L++   E   Y             S LSP ++IG+++    
Sbjct: 265 KNTIYPIDHDSTEEWLDCFLKQKLSEFGPYQDAVHSDYPFVNHSILSPMMNIGLITSSLI 324

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            ++  + +       +S        + WRE+ R L  F     M   F        +N  
Sbjct: 325 VDKTLQYYKQNKAPIQSVEGFLRQVIGWREYVRLLYFFEGEQQMKANF--------FNHQ 376

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L   W  G T  P +D  ++++    ++H+  R++     +    ++ +   ++FM  
Sbjct: 377 NELSNNWYTGQTKLPPVDHMIQKVIKYAYLHHIERLMYIGNTMLLSEINPKEVFKWFMEV 436

Query: 380 LLD-GDL--ASNNGGW-QWAASTGNDSVPYF 406
            +D  +   A N  G  Q A      + PY 
Sbjct: 437 HIDSYEWVMAPNVFGMTQHADGGMMMTRPYI 467


>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
 gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
          Length = 382

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 110/375 (29%), Gaps = 30/375 (8%)

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           I F         D  + L  +     +  +  +        +    + K +   V     
Sbjct: 17  ISFHLL----LGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDVPVCQV 72

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNI 193
           D   ++P            +   P    ++   +      ++   V   +       +  
Sbjct: 73  DAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVSGEKTKTTDWDAVD 132

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
                            G    L +L  FCK+++ Y+   R+ P  +  S LSP+   G 
Sbjct: 133 TFIEVDRSVGEVDWAKPGTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHTGQ 192

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-- 311
           +SP++   R+++         +S        +I RE   +   +                
Sbjct: 193 ISPQRAILRVRDFRSKFRESVESFIEE---CIIRRELSDNFCYYNNEKYDSIEGTNEWAR 249

Query: 312 -----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                   +  +  +     ++  T   + +AA RQL   G +H  LRM  A  +++   
Sbjct: 250 KTLNDHAKDKREYLYARGKLEKAQTHDDLWNAAQRQLVREGKLHGFLRMYWAKKILEWTD 309

Query: 367 VDWRIGEEYFMS---QLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQG 415
                  +         LDG   +   G  W +  G     +         R  N     
Sbjct: 310 SPETALSDAIYFNDKYALDGIDPNGYVGCMW-SVCGIHDQGWAERPVFGKIRYMNYKGCQ 368

Query: 416 KRFDPQGTFIRHWLP 430
           ++F     F++ + P
Sbjct: 369 RKF-AVAEFVKRYKP 382


>gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta]
          Length = 81

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  SL +        +        + L     +   T L +    E     
Sbjct: 1   RFLLQCLEDLDCSLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRV 56

Query: 119 RDKLLEKRLQHRVI 132
           RD  +    +   I
Sbjct: 57  RDHNISALCEELGI 70


>gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai]
          Length = 96

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +  A            P   +I W+++   L  W +G TGFP IDA M QL   GW+H+ 
Sbjct: 1   YTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHL 60

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            R   A FL + DL + W  G + F   LLD D +
Sbjct: 61  ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 95


>gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae]
          Length = 130

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 4/66 (6%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                   ++ F+  S+  ++K+L  +G                 L           ++ 
Sbjct: 2   GFDKTGPYRASFLIDSIADLRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYA 57

Query: 109 NRQYEI 114
           +R+   
Sbjct: 58  HREVSH 63


>gi|282899480|ref|ZP_06307446.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195637|gb|EFA70568.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 511

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 113/410 (27%), Gaps = 41/410 (10%)

Query: 23  NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           +  L           +I   I +    ++     ++   +++++    + L Q+G    Y
Sbjct: 16  HPGLQELTIQRHQTSIIL--IESMAYAQERPYHRQKLVLVWSAMRHFARELGQQGWQVTY 73

Query: 82  HQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
                F  ++          +  + +       +             L + +      + 
Sbjct: 74  EIAPEFSSALTNWQQTHSITELWIMEPSDRPFIQFINQLNLTCPIHWLPNNLFLWKESEF 133

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
           +    G         Y+        L++       +       R       ++ P  +  
Sbjct: 134 IQWARGRKRLLLEDFYREGRKRFNVLMEEGKPVGGQWNLDKQNRKPPKKGLASPPALWFP 193

Query: 200 PFQ-------AIDPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQ-------- 240
           P          +   FP G            + +      +++E R              
Sbjct: 194 PDPTTQAVITHVRNHFPHGYGEVDTFRWAVTRSQSRKVLSHFLETRLPNFGPYQDAMVTG 253

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 + LSPYL++G+L P +    ++EE+    +   S        L WRE+ R +  
Sbjct: 254 EDTLWHALLSPYLNLGLLHPMEVIQAVQEEYNRHQLNLNSVEGFVRQILGWREYMRGVYI 313

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +            W    +             G T    +   + Q+   G+ H+  R++
Sbjct: 314 YQSQTDPDYTQRNWFNHNQPLPHWFW-----TGKTDLNCLHQTLEQIYDTGYAHHIQRLM 368

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
             S     L    +   ++F +  +D           W   T    +  F
Sbjct: 369 ILSNFNLILGTSPQYVVDWFHAVFIDAHD--------WVMQTNVIGMGLF 410


>gi|218441390|ref|YP_002379719.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7424]
 gi|218174118|gb|ACK72851.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7424]
          Length = 506

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/392 (10%), Positives = 105/392 (26%), Gaps = 40/392 (10%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-------- 91
           + I +     Q     ++   +++++    + L Q+G    Y    +F   +        
Sbjct: 32  ILIESSNYVEQRPYHQQKLVLVWSAMRHFAEELQQEGWPVNYQITDDFATPLNHWIKQEK 91

Query: 92  ---------------EWLDSYCLQQRVTKLFYNRQYEINEVRRDK--LLEKRLQHRVICK 134
                          + +D   L   +  +  N      E         ++ L      +
Sbjct: 92  ITQLRVMTPSDRSFLKIIDRLDLNCEIKLIPNNHFLWSTEEFNTWAKSRKRLLMEDFYRE 151

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                 +L  G+                        +            +   V    +P
Sbjct: 152 GRKRFNILMEGNQPVSGQWNLDKQNRKPPKTNLKPPEPLWFEPDEITQDVINKVKNLQLP 211

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
            +                +   + +         +             S +SPYL++G+L
Sbjct: 212 TYGKIEPFLWGVTRQDALKVLDYFITTRLATFGPFQDAMVTGEETMWHSLISPYLNLGLL 271

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P++    +++ + +  +   S        L WRE+ + +            +    E +
Sbjct: 272 EPKEVIEAVEKRYNEEDLPLNSIEGFIRQVLGWREYMQGIYHHVDENYPQNNWFNHNEPL 331

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                      W    T    +   ++Q+   G+ H+  R++  +       +  +  E+
Sbjct: 332 PKFY-------WDSSQTDMNCLQQILQQVEQTGYAHHIQRLMVLNNFALIAGISPQEIED 384

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           +F +  +D           W   T    +  F
Sbjct: 385 WFHAAFIDAHD--------WVMQTNVIGMGQF 408


>gi|224114766|ref|XP_002332277.1| predicted protein [Populus trichocarpa]
 gi|222832439|gb|EEE70916.1| predicted protein [Populus trichocarpa]
          Length = 53

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 8  SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI 42
          S  +VW R D RI DN AL AA    D  V  VFI
Sbjct: 4  SKTIVWCRRDFRIEDNPALAAAAR--DGCVFPVFI 36


>gi|260586482|gb|ACX46123.1| cryptochrome 4 [Sylvia borin]
          Length = 78

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W KD+  L  WK   TGFP IDA M QL   GW+H+  R   A FL +  L + W  G 
Sbjct: 2   CWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGHLWISWEEGM 61

Query: 374 EYFMSQLLDGDLASNNG 390
           + F   L+D D + N G
Sbjct: 62  KVFEELLIDADYSINAG 78


>gi|304393315|ref|ZP_07375243.1| photolyase family protein [Ahrensia sp. R2A130]
 gi|303294322|gb|EFL88694.1| photolyase family protein [Ahrensia sp. R2A130]
          Length = 505

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 93/347 (26%), Gaps = 18/347 (5%)

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWL------DSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + L ++GI        +     + L           ++  T  F N      E R  K  
Sbjct: 87  RRLKEEGIDRIIFAHPHDFTLEKRLHTALSDAEIEHEELDTPAFINTPQLNREYREGKKR 146

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                     +   D ++                     KA +  + Q   R+       
Sbjct: 147 WFMADFYKFQRKRLDILMDGDNPQGGQWSFDDDNRKKVPKAKMAEIPQLHPRNATPYEQD 206

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               V       +                +     L +       Y        +     
Sbjct: 207 ARQWVEKHFSGNYGSAETLWFPIDHEGAAEWLNTFLEQRFHLFGPYEDAIVKGESWLWHG 266

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L+P L++G+L+PRQ  N          +   S        + WREF     A       
Sbjct: 267 VLTPMLNVGLLTPRQIVNETLAFADKHDVPINSLEGFIRQIIGWREFMAATYADL----- 321

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +       W     +  ++  G TG   ID A+ ++N   + H+  R++     + 
Sbjct: 322 ---GVEMRTTNHWKHTRKIPHSFYDGTTGIGPIDDAIHRINDTAYAHHIERLMVLGGFMF 378

Query: 364 DLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
               D      +FM   +D  D     +     Q A      + PYF
Sbjct: 379 LCEFDPDDIYRWFMEMFIDAYDWVMVPNAYAMSQNAGGGNITTKPYF 425


>gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 507

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 131/469 (27%), Gaps = 80/469 (17%)

Query: 11  LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50
           + W+  D R+ DN                     +L+                     + 
Sbjct: 42  VYWMLRDQRLADNWALLHAASLAAASAAPLAVAFSLF--------------------PKP 81

Query: 51  HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
             +SAR+    F+   L ++    + + I F              + +   +   + L  
Sbjct: 82  FLLSARRRQLGFLLRGLRRLAADAATRRIPFFLLTGGP-----TEIPALVRRLGASALVA 136

Query: 109 NRQYEINEVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           +             +   L      V     D   ++P  +         K +      +
Sbjct: 137 DFSPLRPVREALDAVVGTLGRDAASVAVHQVDAHNVVPVWAASGKLEYSAKTFRSKMNKV 196

Query: 166 I-QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALH 217
           + + LV+    +  VP  R        ++                  +P      +  L 
Sbjct: 197 LDEYLVEFPELAQVVPWDREQPKDIDWDMLIDTVCSQAEDVPEIDWCEPGEAAAMEALLG 256

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
               F  +++  Y   R+ P      S LSPYL  G +S ++C    K+          +
Sbjct: 257 TKDGFLTKRIKSYDSDRNYPTKPTALSGLSPYLHFGHISAQRCALEAKKRRHLSPKSVDA 316

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGY 330
                   +I RE   +   + P          W  K   +  +   +            
Sbjct: 317 FLEEL---IIRRELADNFCYYQPHYDSVAGAWEWARKTLKDHAADKREHIYTREQLENAK 373

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387
           T  P+ +A+  ++   G MH  +RM  A  +++                    +DG   +
Sbjct: 374 TADPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSIAIYLNDKYHIDGRDPN 433

Query: 388 NNGGWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427
              G  W+    +D      P F   R  N     ++ D     ++++ 
Sbjct: 434 GYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKLDVDAYISYVKR 482


>gi|32475188|ref|NP_868182.1| a deoxyribodipyrimidine photolyase-like protein [Rhodopirellula
           baltica SH 1]
 gi|32445729|emb|CAD78460.1| conserved hypothetical protein-putative a deoxyribodipyrimidine
           photolyase-related protein [Rhodopirellula baltica SH 1]
          Length = 566

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 98/328 (29%), Gaps = 14/328 (4%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+LS   +              E L +   Q+ V   F    +      +        
Sbjct: 137 LRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNHFYCSPDQFDDWASGR 196

Query: 128 QHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +  V+ + +                     +      RK   +   +    +       +
Sbjct: 197 KSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFGKGGPKEVPPTPSFKPDSI 256

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQ 240
           T  V      RF D+P +      P+   +AL+ L  F + ++  +   +D         
Sbjct: 257 TQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHRLPLFGTYQDAMWEGETFL 316

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LS  +++ +LSP++  +   + + D               L WRE+ R +      
Sbjct: 317 YHSRLSHSINLHLLSPKEVVDAAVKAYKDGNAPLNCVEGFVRQILGWREYVRGVYWNRMP 376

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +  +    + +             G T    +  AMR L    + H+  R++    
Sbjct: 377 DYEERNALHCDSEQDVPPFFW------DGNTDMACVSDAMRLLVDTAYAHHIQRLMVLGL 430

Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387
             +           + M+   D  D  S
Sbjct: 431 FAQLFGTHPLRFHHWHMAMYADAIDWVS 458


>gi|168702415|ref|ZP_02734692.1| deoxyribodipyrimidine photolyase [Gemmata obscuriglobus UQM 2246]
          Length = 524

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 11 LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
          L W    R   R+  N AL  A   +      + +    +      +AR   FI   +  
Sbjct: 22 LYWPQMFR---RLHSNHALDHALKLAGEHKKPLVVYEGLKLNYPWANARHHTFILQGMRD 78

Query: 68 VQKSLSQKGI 77
            ++  + G+
Sbjct: 79 NARAAQKLGL 88


>gi|255017124|ref|ZP_05289250.1| hypothetical protein LmonF_03773 [Listeria monocytogenes FSL
           F2-515]
          Length = 53

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 1   FIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 48


>gi|186683798|ref|YP_001866994.1| deoxyribodipyrimidine photolyase-related protein [Nostoc
           punctiforme PCC 73102]
 gi|186466250|gb|ACC82051.1| deoxyribodipyrimidine photolyase-related protein [Nostoc
           punctiforme PCC 73102]
          Length = 503

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 112/388 (28%), Gaps = 36/388 (9%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL +  H  +  VI   I +    +      ++   +++++    + L Q      Y  
Sbjct: 21  AALQSCLHQENVPVIL--IESLRHVQVRPYHRQKLVLLWSAMRHFAQELRQLKYSVTYKI 78

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK--LLEKRLQHRVICKSFDDSVL 141
             +F+  ++         ++  +  N       ++  +       + +     S ++   
Sbjct: 79  AEDFETPLQEWIKENQITQLRVMTPNDLPFTQIIQSLELLCTITLIPNNHFLWSTEEFNN 138

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
              G         Y+      + L++       +       R       +  P  +    
Sbjct: 139 WASGRKRLLMEDFYREGRRRFQILMEKDKPVGGKWNLDKENRQPPKGKLNTPPTQWFESD 198

Query: 202 Q---------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------------- 239
           +                 GE           +         ++                 
Sbjct: 199 EITLDVIAQVNSLTCPTYGEIKPFRWGINRQQALQVLDWFIQNRLPHFGPYQDAMVTGEE 258

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               + LSPYL+IG+L P +    +++ +    +   S        L WRE+   +  + 
Sbjct: 259 TMWHALLSPYLNIGLLQPMEVIQAVQQAYFQQQLPLNSVEGFIRQVLGWREYMHGIYHYV 318

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +    K +   T+ +           W  G T    +   + Q+   G+ H+  R++  
Sbjct: 319 DADYSNKNWFNHTQPLPDFF-------W-TGRTEMNCLHQILTQVERTGYAHHIQRLMVL 370

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
           S       +  +  E +F +  +D  D 
Sbjct: 371 SNFALIAGLSPQSVENWFHAVFIDAYDW 398


>gi|256426122|ref|YP_003126775.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
 gi|256041030|gb|ACU64574.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
          Length = 492

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 111/354 (31%), Gaps = 18/354 (5%)

Query: 62  YASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +A++  + K L  K +    Y +  ++      ++ YC Q  +  + Y     IN +   
Sbjct: 76  HATIQALIKWLHSKKVYELHYAETDDYL-LERRINRYCRQYDIAPVTYINPGFINRLDEV 134

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                  +   +   +          I                       ++       P
Sbjct: 135 TTFFDGRKRYFMQDFYIHQRKTRQILIDVKGPVGGHWSFDADNREKIPKGESIPDPRFPP 194

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A +            + + P  A    +P+  Q A H L +F +E+   +    D     
Sbjct: 195 AGKYLKEAISYVQQHYKNNPGDATTCRYPVTHQQAEHWLEQFLEERFRKFGIYEDAIVQT 254

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S L+P L+IG+L P Q   +         +   S        L WREF R L  
Sbjct: 255 ESILYHSMLTPALNIGLLLPMQILEKAIAMAPVHKVPLNSLEGFIRQILGWREFIRILYR 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              S      F      +          ++  G TG P ID  + +L   G+ H+  R++
Sbjct: 315 REGSKQRTTNFWDHERPMPD--------SFYTGNTGIPPIDQTIHKLLRHGYTHHIERLM 366

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
                +    +      ++FM   +D  D     +  G  Q+A      + PY 
Sbjct: 367 ILGNFMLLCELHPDAVYQWFMELYIDAYDWVMVPNVYGMSQFADGGLMSTKPYI 420


>gi|162454692|ref|YP_001617059.1| hypothetical protein sce6412 [Sorangium cellulosum 'So ce 56']
 gi|161165274|emb|CAN96579.1| phr [Sorangium cellulosum 'So ce 56']
          Length = 508

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/462 (14%), Positives = 117/462 (25%), Gaps = 68/462 (14%)

Query: 1   MKATTAMSV------HLVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
           ++   AM V       L W+   R   R   N  L  A   S A    + +    +    
Sbjct: 11  LRTRNAMPVREGGDYVLYWMIASR---RTRYNFGLERAIAWSMALDRPLVVLEALRCGYR 67

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
             S R   F+   +    + L+  G+    +           L +   +  V        
Sbjct: 68  WASDRIHRFVIDGMADNARRLAAAGVAHHPYVEPAEGAGKGLLGALAARACVVVTDDYPC 127

Query: 112 YEINEVRRDKLLE--------------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           + +  +      +                     +  +     +     I  H      V
Sbjct: 128 FFLPRMVASAARQAPVRLEQVDSNGLLPMRAADRVFTTARSFRIFWQRVIGEHLGAQPAV 187

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
               R  L          +   PA                             G + A  
Sbjct: 188 DPLKRAKLRPAAPLPRAIARRWPAASPALLGGDPAALSALPIDHTVPPAPCRGGPEAAGK 247

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            L +F  +++  Y+E+RD P    TS LSPYL  G L+  + +  +       + +    
Sbjct: 248 ALARFVADRLPRYLEERDHPDAGATSGLSPYLHFGHLAAHEVFAAVARREAFRVERLGRP 307

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMG-----------------KPFIPWTEKIEWNKDS 320
                     RE +  + A   +                     +   P         + 
Sbjct: 308 GDGVKRPSGSREGFWGMSASAEAFLEQLVTWRELGFNAFALGASEGDGPRPSWKRDPTEY 367

Query: 321 HLLQAW------KQGYTGFP----------------IIDAAMRQLNTIGWMHNRLRMITA 358
             L  W      K      P                I +A+  +L   G MHN LRM+  
Sbjct: 368 ESLPDWALATLEKHARDRRPRVYPIEALAAGATYDRIWNASQVELLREGRMHNYLRMLWG 427

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
             +++         E          LDG   ++  G  W   
Sbjct: 428 KKILEWSRTPREALEIMIELNDRYALDGRDPNSTSGIFWVLG 469


>gi|227505175|ref|ZP_03935224.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
 gi|227198224|gb|EEI78272.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
          Length = 120

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 44/81 (54%)

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                       I  +E+         L+AW+ G TG P++DA MR+L   G+MHN +RM
Sbjct: 13  FRNFDWYWDGGGIDTSERDPRPHPLPELEAWRTGETGIPLVDAGMRELWQTGYMHNHVRM 72

Query: 356 ITASFLVKDLLVDWRIGEEYF 376
           +  SFL K+L + WR GEE+F
Sbjct: 73  VVGSFLTKNLGIHWRHGEEWF 93


>gi|33860982|ref|NP_892543.1| hypothetical protein PMM0425 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639714|emb|CAE18884.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 496

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+ ++  ++         +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTAKEVIDKALTYGEKNKVPINSLEGFIRQIVGWREFICLVYEKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F           +  + + + +G TG   +D  +  +   G+ H+  R++    
Sbjct: 322 QMRTTNF-------WNFDNKPMPECFYKGSTGIDPVDIVINNIIKYGYCHHIERLMIIGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPDHVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|269965811|ref|ZP_06179906.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
 gi|269829546|gb|EEZ83785.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
          Length = 117

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                S R   F++ SL  + ++L   G          FDD++    S   Q ++  +F 
Sbjct: 2   NNPHYSERHWRFVWQSLQDMDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFS 57

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
           +++  +N             +      F+          +N       +    
Sbjct: 58  HQEIGLNCTFERDRQVAAWLYEQNIDWFEFEHGAVIRGAINRQGWDKHLGLCH 110


>gi|260436163|ref|ZP_05790133.1| photolyase protein family protein [Synechococcus sp. WH 8109]
 gi|260414037|gb|EEX07333.1| photolyase protein family protein [Synechococcus sp. WH 8109]
          Length = 498

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +   S L+P L+IG+L+P Q  +R  E      I   S        + WREF   + 
Sbjct: 259 QHQVMWHSVLTPMLNIGLLTPLQVLDRTLERAEAGDIPLNSLEGFLRQIIGWREFMAAIY 318

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F  + ++        +  A+    TG P ID A+R     G+ H+  R+
Sbjct: 319 RRHGVEMRNGNFWGFDDRP-------IPSAFYTASTGLPPIDDAIRHALETGYCHHIERL 371

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
           +    ++            +FM   +D  D     N  G  Q+A      + PY
Sbjct: 372 MLLGNVMLLCGFHPTRIYTWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPY 425


>gi|33865778|ref|NP_897337.1| photolyase family protein [Synechococcus sp. WH 8102]
 gi|33632948|emb|CAE07759.1| photolyase protein family [Synechococcus sp. WH 8102]
          Length = 495

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 11/175 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +     L+P L+IG+L+P+Q  +R         +   S        + WREF   + 
Sbjct: 256 QHQVMWHGVLTPMLNIGLLTPQQVLDRTLARAEVGDVPLNSLEGFIRQIIGWREFMAAMY 315

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F    ++        + +A+  G TG P ID A+      G+ H+  R+
Sbjct: 316 RRHGVTMRNGNFWEVEDRP-------IPEAFYTGSTGLPPIDDAISHALDTGYCHHIERL 368

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +    ++            +FM   +D  D     N  G  Q+A      + PY 
Sbjct: 369 MLLGNVMLLCGFHPTRVYSWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 423


>gi|120437053|ref|YP_862739.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii
           KT0803]
 gi|117579203|emb|CAL67672.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii
           KT0803]
          Length = 515

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/361 (10%), Positives = 102/361 (28%), Gaps = 28/361 (7%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
             N D +VI + I  PE  +                  + K +S+K I    +Q  +   
Sbjct: 65  LRNKDFQVIYLSINDPENLQNLD-------------KNLNKIISEKNIEKFEYQFPDEYR 111

Query: 90  SIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
             E L  +     +    +   +   + +++ +    +K+L      +   +   +   +
Sbjct: 112 LDEQLKKFSKHLHIKSEAFDSEHFFTKRDDLEKFYEGKKQLTMEYFYRYMREKNNILMAT 171

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
             +     +      RK    +      R       ++   +  + I        +  + 
Sbjct: 172 EKDPEGGKWNFDKSNRKKWTGDPEIPHERGFRKDVSKILKEIEQAEIKTMGSLDEKKFNW 231

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQ--RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                +  ++           +   +            S+LS  ++  +LSPR+  + + 
Sbjct: 232 PTSREDSLSVLNYFCKNLLIHFGDFQDALHTEQEYLFHSRLSFSMNSKMLSPREVVDSVI 291

Query: 265 EEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           + + +                 L WRE+ R +             +    K+        
Sbjct: 292 DFYYEHRDTIDISQVEGFVRQILGWREYMRGIYWKEMPGYRRANKLDNQNKLPEFY---- 347

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W    T    +  +++      + H+  R++                + +++   +D
Sbjct: 348 ---W-NAETKMNCLHHSIKNSLENAYAHHIQRLMITGNYALLTQTHPDEVDHWYLGIYID 403

Query: 383 G 383
            
Sbjct: 404 A 404


>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 477

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/410 (14%), Positives = 127/410 (30%), Gaps = 35/410 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           + W   D R  +N AL  A   ++ + + + +      +        AR++ F    L +
Sbjct: 29  VYWCDRDRRCANNDALGRAMELANERRVPLVVAMHVGTDLSGSGIGGARRAVFALKGLKE 88

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L  +G+     + +   D    +   C     + +  +           + + + +
Sbjct: 89  LDEDLRARGVS---TRTTTGSDVAGGIVETCETLNASAVVCDFSPLREGRAAREAVARVV 145

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  VI    D   ++P     +      +   P     + + + A      + A      
Sbjct: 146 EVPVIEV--DAHNVVPAWVTSDKQEYAARTIRPKIHRNLGDFLTAPQALDDLIAAPDALT 203

Query: 188 VTPSNIPR---------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + ++                    I P         L         +      +R+ P 
Sbjct: 204 PSETDWDALIDTARVKGAHVPEVDWIKPGERAALAALLDPNVDSFLPQRLTLYGERNKPT 263

Query: 239 IQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S+LSPYL+ G LSPR+      +    +  +        L  ++ RE   +   F
Sbjct: 264 SPRAVSRLSPYLNHGQLSPRRAAWEAAQLRGIVDDEAIDSYLEEL--IVRRELSDNYCLF 321

Query: 298 YPSV------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            P                     +  +  +  +  ++G T   + +AA ++L  +G MH 
Sbjct: 322 NPYYDSLQGASQWAQDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHLGRMHG 381

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDG------DLASNNGGWQWA 395
            +RM  A  +++               QL D       D  +   G  W+
Sbjct: 382 FMRMYWAKKILEWT--PSPEVALQTAIQLNDAYALDGLDP-NGYVGCMWS 428


>gi|88808546|ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805]
 gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805]
          Length = 495

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +   S L+P L+IG+L+P+Q  +R  E   D  I   S        + WREF   + 
Sbjct: 256 QHRVMWHSVLTPMLNIGLLTPQQILDRTLERAADGDIPLNSLEGFIRQIVGWREFMAVMY 315

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F  + ++        +  A+    TG P ID A+    + G+ H+  R+
Sbjct: 316 RRHGVAMRNSNFWKFEDRP-------IPDAFYTATTGLPPIDDAIGHALSSGYCHHIERL 368

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNN-GGWQWAASTGNDSVPY 405
           +    ++       +   ++FM   +D  D     N  G  Q+A      + PY
Sbjct: 369 MLLGNVMLLCGFHPQRVYQWFMELFVDAYDWVMVPNVFGMSQFADGGLFTTKPY 422


>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
 gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
          Length = 494

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 114/430 (26%), Gaps = 47/430 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R   N +L  A   +      + +    +      S R   F+   +     
Sbjct: 25  LYWMIANRRTRCNFSLQRAVDWAQQLKKPLIVFEALRIDYPWASRRFHRFVLQGMRDNAA 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +      Y+         +                             +     +  
Sbjct: 85  ALRR--SPVLYYPYVEPGKHED--HGLFAALAARSCVIVTDDFPCFFLPRMVRAVARRVD 140

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------------- 175
           V+ +  D + +LP  +        +         L  +LV                    
Sbjct: 141 VLLEQVDSNGILPMRAADRTFTVAHSFRRFLHHQLRDHLVDFPQADPLQDAQIPRAASKL 200

Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
                   P          S             D +   G   A   L  F  +++  Y 
Sbjct: 201 IANIQTNYPPASSEVLSAASEALDALPIDQSVGDAVMEGGSVAAQQTLDSFLGDRLLRYG 260

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNE--- 284
           E+R+ P     S LSPYL  G +S    + +L E        L  K       W N    
Sbjct: 261 EERNSPESDAASGLSPYLHFGHISAHDIFVQLSERESWNVSHLADKATGSREGWWNMSTD 320

Query: 285 --------LIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGY 330
                   + WRE   ++ +   +    +    W        + +     + L   +   
Sbjct: 321 AESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGEHQKDPRPYVYDLAQLESSR 380

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387
           T   + +AA  QL   G MHN LRM+    +++                    +DG   +
Sbjct: 381 THDQLWNAAQSQLVREGRMHNYLRMLWGKKILEWSTTPEEALAAMIQLNNKYAVDGRNPN 440

Query: 388 NNGGWQWAAS 397
           +  G  W   
Sbjct: 441 SYSGIFWCLG 450


>gi|153005863|ref|YP_001380188.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
 gi|152029436|gb|ABS27204.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
          Length = 493

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 97/385 (25%), Gaps = 39/385 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R+  N AL  A   +      V I    +      S R   F+   + +  +
Sbjct: 29  LYWMTAARRVRFNPALERAIALARELERPVAILEALRVGDPYASDRLHAFVLQGMAENAR 88

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G V  +          E L      +    +  +        +      +     
Sbjct: 89  RLA--GRVLHHPYVERAPGEGEGLLEALAARACAVVTDDLPTFFLPRQCAAAAAQVDVRV 146

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------------- 176
                         G     A    +       A +  L  AD  +              
Sbjct: 147 EAVDGSCVVPFRLAGKDFPTAHAYRRHLQRLLPAWLDRLPSADPLARAALPPPPALSRGI 206

Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
               PA+       P+ +                 G + A   L ++ ++ +  Y + R 
Sbjct: 207 AQRWPAVTPDALARPARLTASLPIDHGVPPAPLRGGARAAGVRLARWLEQGLPRYADARS 266

Query: 236 IPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE---------- 284
            P  +   S LSP+L  G +S  +    +             G     +           
Sbjct: 267 DPDEEGVASGLSPWLHFGHVSSFEVVRAVLRREGWTPALLSPGVTGARSGWWGVSAAAEA 326

Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGF 333
                + WRE      A             W                          T  
Sbjct: 327 FLDQLVTWRELGFATCAHRADHREYGSLPAWARATLEAHAGDPRPHAYDRDTLDAARTHD 386

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITA 358
           P+ +AA RQL   G +HN LRM+  
Sbjct: 387 PLWNAAQRQLRVEGVIHNALRMLWG 411


>gi|327540311|gb|EGF26897.1| Deoxyribodipyrimidine photolyase-related protein [Rhodopirellula
           baltica WH47]
          Length = 513

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 98/328 (29%), Gaps = 14/328 (4%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+LS   +              E L +   Q+ V   F    +      +        
Sbjct: 84  LRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNHFYCSPDQFDDWASGR 143

Query: 128 QHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +  V+ + +                     +      RK   +   +    +       +
Sbjct: 144 KSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFGKGGPKEVPPTPSFKPDSI 203

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQ 240
           T  V      RF D+P +      P+   +AL+ L  F + ++  +   +D         
Sbjct: 204 TQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHRLPLFGTYQDAMWEGETFL 263

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LS  +++ +LSP++  +   + + D               L WRE+ R +      
Sbjct: 264 YHSRLSHSINLHLLSPKEVVDAAVKAYEDGTAPLNCVEGFVRQILGWREYVRGVYWNRMP 323

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +  +    + +             G T    +  AMR L    + H+  R++    
Sbjct: 324 DYEERNALHCDSEQDVPPFFW------DGNTDMACVSDAMRLLVDTAYAHHIQRLMVLGL 377

Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387
             +           + M+   D  D  S
Sbjct: 378 FAQLFGTHPLRFHHWHMAMYADAIDWVS 405


>gi|326319200|ref|YP_004236872.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376036|gb|ADX48305.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 526

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 111/424 (26%), Gaps = 65/424 (15%)

Query: 20  ITDNK---------ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + D+          AL AA               P++         +          +  
Sbjct: 81  LDDHHGAPCRTLADALRAAIRTHR----------PQRLVMTAPGDWRVW------KALSA 124

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +  G+        +F  ++     +  Q     L     Y     R   L++      
Sbjct: 125 VAADAGLPLDTRPDRHFFATVREFADFRRQLGGRPLRLETFYRAMRRRHGILMDGDRPEG 184

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                  ++              +         AL + ++QA  R        L     P
Sbjct: 185 GAWNYDKNNRRPFG---PQGPGMVPARCRFEPDALTREVLQAVSRRFGDHPGLLEDFAWP 241

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
               +        +D   P        +                        S LS  L+
Sbjct: 242 VTRAQALHALADFVDHRLPAFGPFQDAMWPGEPWLYH---------------SHLSAALN 286

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           + ++ PR+     +  +    +   S        L WRE+ R +              P 
Sbjct: 287 LKLIHPREVVAATEAAYRSGKVPLASAEGFIRQILGWREYVRGIYWTEM---------PS 337

Query: 311 TEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                       L AW   G T F  +  A+RQ    G+ H+  R++        L V  
Sbjct: 338 YRDRNALGADAPLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRP 397

Query: 370 RIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRF 418
           +    ++++  +D     +L +  G  Q+A      S PY        R+  P     R 
Sbjct: 398 QAVHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCT-TCRH 456

Query: 419 DPQG 422
           DP  
Sbjct: 457 DPDA 460


>gi|124006828|ref|ZP_01691658.1| photolyase protein family [Microscilla marina ATCC 23134]
 gi|123987509|gb|EAY27218.1| photolyase protein family [Microscilla marina ATCC 23134]
          Length = 425

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S L+P L++G+L+PRQ  +          +   S        + WREF R +  +  +
Sbjct: 182 NHSVLTPMLNVGLLTPRQVIDNTLAFSQAQQVPLNSLEGFVRQIIGWREFIRGVYQYKGT 241

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K +        W     +  ++ +G TG   +D  ++++   G+ H+  R++    
Sbjct: 242 EERTKNY--------WGFTRKIPPSFYEGTTGITPVDVTIKKVLKTGYCHHIERLMVLGN 293

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +     D      +FM   +D  D     N  G  Q+A      + PY 
Sbjct: 294 FMVLCEFDPDEVYRWFMELFVDAYDWVMVPNVYGMSQFADGGLMSTKPYI 343


>gi|306019717|gb|ADM78912.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019719|gb|ADM78913.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019721|gb|ADM78914.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019723|gb|ADM78915.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019725|gb|ADM78916.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019727|gb|ADM78917.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019729|gb|ADM78918.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019731|gb|ADM78919.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019733|gb|ADM78920.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019735|gb|ADM78921.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019737|gb|ADM78922.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019739|gb|ADM78923.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019741|gb|ADM78924.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019743|gb|ADM78925.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019745|gb|ADM78926.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019747|gb|ADM78927.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019749|gb|ADM78928.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019751|gb|ADM78929.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019753|gb|ADM78930.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019755|gb|ADM78931.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019757|gb|ADM78932.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019759|gb|ADM78933.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019761|gb|ADM78934.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019763|gb|ADM78935.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019765|gb|ADM78936.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019767|gb|ADM78937.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019769|gb|ADM78938.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019771|gb|ADM78939.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019773|gb|ADM78940.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019775|gb|ADM78941.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019777|gb|ADM78942.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019779|gb|ADM78943.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019781|gb|ADM78944.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019783|gb|ADM78945.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019785|gb|ADM78946.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019787|gb|ADM78947.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019789|gb|ADM78948.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019791|gb|ADM78949.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019793|gb|ADM78950.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019795|gb|ADM78951.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019797|gb|ADM78952.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019799|gb|ADM78953.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019801|gb|ADM78954.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019803|gb|ADM78955.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019805|gb|ADM78956.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019807|gb|ADM78957.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019809|gb|ADM78958.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019811|gb|ADM78959.1| cryptochrome 1-like protein [Picea sitchensis]
          Length = 193

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             ++  SL  +  SL   G      + +   +SI  +         T+LFYN  Y+   +
Sbjct: 1   RWWLKQSLAHLDSSLRNLGARLITKRST---NSISAILQVVQATGATQLFYNHLYDPLSL 57

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
            RD  L++ L  R I  +SF+  +L  P  + +     +  +  +    +      
Sbjct: 58  VRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDP 113


>gi|145589789|ref|YP_001156386.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048195|gb|ABP34822.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 511

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/374 (12%), Positives = 106/374 (28%), Gaps = 32/374 (8%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDK 121
           +  +++ L Q  I              + ++    +  ++       +      E     
Sbjct: 83  VDALKEKLQQDNIGRLICIEPGEWRLKQQIEKLASELSISLEMCEDDHFFCTHQEFIDWT 142

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +K L+     +       +   +  N     +      RK   +         +    
Sbjct: 143 AGKKELRLEYFYRLMRKRHNILVDAEGNPEGGQWNFDQDNRKPYPKKGPGMVDEPVLFEP 202

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +T  V       +  +P       +P+  + AL  L  F + ++  +   +D      
Sbjct: 203 DEITQEVIAFVKRTYPKHPGSLEAFRWPVNREQALEALNYFVEYRLRNFGVYQDAMWTDT 262

Query: 242 TSQL----SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                   S  L++ +L+PR+    +   +    +   +        L WREF R +   
Sbjct: 263 PYGWHSILSSSLNLKLLNPREVIAAVLTAWKKYALDLSTVEGFIRQILGWREFVRGMYYL 322

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                    +      +           W  G T    +  A+ Q    G+ H+  R++ 
Sbjct: 323 DMPGMAQDNYYGHERALPKWY-------W-DGKTKMACMKDAIGQTLEYGYAHHIQRLMV 374

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
                    +      +++++  +D     +L +  G   +A      S PY        
Sbjct: 375 TGNFALLAEILPSAVCDWYLAIYVDAIEWVELPNTAGMALFANGGRFTSKPYI------- 427

Query: 414 QGKRFDPQGTFIRH 427
                   G +I+ 
Sbjct: 428 ------ASGAYIKR 435


>gi|307101791|gb|EFN50420.1| hypothetical protein CHLNCDRAFT_29124 [Chlorella variabilis]
          Length = 92

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F+      +  +     + W  D  L +AW+QG TG+P++DAAMR++   GWMHNR+R++
Sbjct: 9   FHFPFTHERSLLEHLRAVPWRFDQRLFKAWRQGRTGYPLVDAAMREVWGTGWMHNRMRVV 68

Query: 357 TASFLVKDLLVDWR 370
            ASF+VK+LL+ W+
Sbjct: 69  AASFMVKNLLLPWQ 82


>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           MedDCM-OCT-S09-C3]
          Length = 496

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 120/437 (27%), Gaps = 51/437 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+ +  R   N AL  A   ++   + + +           + R   F+   ++   +
Sbjct: 22  VYWMTSARRARWNHALDHAVELANEHHVPLIVVECLALGHRYANDRIHTFVLQGMMD-NR 80

Query: 71  SLSQKGIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L +   V            +   L S+        +     Y   +V R      +   
Sbjct: 81  KLFEMSAVTYVPYVETKKFQAGGLLQSFAKDAVAVVIDDYPTYMPRDVARRAKKLTQCSV 140

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R I  +    +  P  S          ++      +    +   L+ L            
Sbjct: 141 RCIDSNGVVPLRAPERSFSTAHSFRRYIHQNVLNFIADPPLSHPLKELNDVPDGSIIVKQ 200

Query: 190 PSNIPRFFDYPFQAID-------------------------PMFPIGEQNALHILRKFCK 224
                     P + I                               G   A   L+KF +
Sbjct: 201 CFEEVNIPLTPLEFIWRVSEASREGRDALQALDIDHDVPPVDSRRGGSVTARTELKKFIE 260

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +++  Y   R+ P   G S LSP+L  G +S  +  N +        +            
Sbjct: 261 QRLNTYHVDRNHPERHGGSGLSPWLHFGHISSFEIVNEVLTSQKWNPMLITPPHNGRRAG 320

Query: 285 ---------------LIWREFYRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLL 323
                          + WRE        +P     +    W +K       +     +  
Sbjct: 321 WWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTLEEHATDERPYVYTF 380

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQL 380
           +  +   T  P+ +AA  QL   G +HN LRM+    +++      +  E          
Sbjct: 381 EQLENAETHDPLWNAAQTQLRKEGIIHNYLRMLWGKKVLEWCPDPEKACEWLIQLNDRWA 440

Query: 381 LDGDLASNNGGWQWAAS 397
           LDG   ++  G  W   
Sbjct: 441 LDGRDPNSYTGIFWIFG 457


>gi|297521221|ref|ZP_06939607.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 28

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNS 33
          M  HLVW R DLR+ DN AL  AC +S
Sbjct: 1  MITHLVWFRQDLRLHDNLALAGACRHS 27


>gi|260431371|ref|ZP_05785342.1| photolyase protein family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415199|gb|EEX08458.1| photolyase protein family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 471

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 103/359 (28%), Gaps = 20/359 (5%)

Query: 60  FIYASLLQVQ--KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQ 111
           F   S   ++  +SL  +G+            + + L +      +         F N +
Sbjct: 49  FERQSGACLRLFQSLRDRGVDQVIMADPADFIAEKRLRAAASNTGIMLDIQPSPGFLNTR 108

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            +  +    +      +     +   + ++     +        +      KAL+ +L  
Sbjct: 109 ADNLDWSAGRKRWFMAEFYKSQRRRLNVLMDSGQPVGGQWSFDEENRKKVPKALLGSLPW 168

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            D              V                              L +  +    Y  
Sbjct: 169 IDWPVHDAVDEAAKASVIADFPDALGSLDTLYYPTSHEAASDWLGQFLERRFEHFGDYED 228

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
              +       + L+P L+IG+L+P+Q  +          I   S        + WREF 
Sbjct: 229 AIVEGENWLWHAVLTPALNIGLLTPKQVLDAALAHADRKGIPLNSVEGFIRQIIGWREFM 288

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R               +P      W     + +++  G TG   +D  ++++   G+ H+
Sbjct: 289 RATYESL--------GVPMRTTNHWGHHRPMPRSFYDGTTGIDPLDDTIKRVLQTGYCHH 340

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
             R++     +    +D      +FM   +D  D     +     Q A      + PYF
Sbjct: 341 IERLMVLGGFMFLCEIDPDHVYRWFMEMFVDSYDWVMVPNVYAMSQHADGGLITTKPYF 399


>gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays]
          Length = 376

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 90/346 (26%), Gaps = 48/346 (13%)

Query: 11  LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54
           + W+  D R+ DN                  L  A           F   P  +   G  
Sbjct: 29  VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            RQ  F+   L ++      +G+ F   +    +     L S   +   + L  +     
Sbjct: 77  LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131

Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168
                   + + L      +     D   ++P  +         K +      +I     
Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191

Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                   A        ++     +                +P      +  L     F 
Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGNKDGFL 251

Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +++  Y   R+ P      S LSPYL  G +S ++C     E      + PKS      
Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             +I RE   +   + P          W  K   +      +    
Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYT 354


>gi|254424869|ref|ZP_05038587.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           PCC 7335]
 gi|196192358|gb|EDX87322.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           PCC 7335]
          Length = 505

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 102/386 (26%), Gaps = 39/386 (10%)

Query: 30  CHNSDAKVIAV----FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
            + SD  +I +    ++      +Q      +   I++++    + L  +G    Y   +
Sbjct: 24  ANKSDTPIILIESIDYVIKRRYHQQ------KLVLIWSAMRHFAEELKAEGWQVTYKIAT 77

Query: 86  NFDDSIEW------LDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFD 137
            F   +E       +D   + +   + F      +  +           L      +S+ 
Sbjct: 78  TFQAPLEEWIEQNNIDELRVMEPADRPFAEWLDAMSLDCEIVQTQNNHFLWSTAEFESWA 137

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
            S             +         K  +      D  +   P   ++ P   +  P   
Sbjct: 138 TSRKSLLMESFYREGRRRFDILMDGKKPVGGQWNFDKENRRPPKGTISPPKPLTFEPDEI 197

Query: 198 D---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--------------PAIQ 240
                           GE ++        +         RD                   
Sbjct: 198 TQTVMKTVKTADYSTFGESDSFGWAVTREQALQVLDNFVRDRLTTFGPYQDAMVTGEDTM 257

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             + LSPYL+IG+L P +  + +   +            + +   I +            
Sbjct: 258 WHAMLSPYLNIGLLQPMEVIDAVIAAYESAANSDHPIPLNSVEGFIRQVLGWREYMRGIY 317

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             +   +         +           G T    +   +  L   G+ H+  R++  + 
Sbjct: 318 NHVDADYPSRNYFEHIHSLPDFFW---TGDTKLNCLHQTINTLKRTGYAHHIQRLMILAN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385
                 +  +  E++F +  +D  D 
Sbjct: 375 FSLISGLSPQQVEDWFHAAFIDGYDW 400


>gi|124026270|ref|YP_001015386.1| hypothetical protein NATL1_15641 [Prochlorococcus marinus str.
           NATL1A]
 gi|123961338|gb|ABM76121.1| Uncharacterized protein deoxyribodipyrimidine photolyase-like
           protein [Prochlorococcus marinus str. NATL1A]
          Length = 496

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 11/177 (6%)

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    S LSP ++ G+L+PRQ  ++  E +    I            + WREF   
Sbjct: 255 HSNHRTLWHSVLSPLINSGLLTPRQIIDKSWEFYQSNNIGINCYEGFVRQIIGWREFILL 314

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +            F  + +K        +  ++  G TG   +D +++ +   G+ H+  
Sbjct: 315 MYKRNSLELRNGNFWDFEDKP-------IPLSFYTGQTGIRPLDDSIKNILETGYAHHIE 367

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           R++    L+           ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 368 RLMIVGNLMLLCRFHPNQVYKWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYI 424


>gi|109899107|ref|YP_662362.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701388|gb|ABG41308.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
          Length = 503

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 105/333 (31%), Gaps = 23/333 (6%)

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           D ++++    L+Q   +      +  N    +   +         + F         + L
Sbjct: 108 DPVDFILKKRLEQYAYEGHIQITWHKNPGFLNTQRQNSAYRDSKKRWFMADFYRHQRTRL 167

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM- 207
           N  +   K  +       +N  +   + +           T  +            D   
Sbjct: 168 NILMDGDKPVSGRWSFDEENRKKIPKKEIANIPEIQFCAKTQYHTQAIERINADFSDHPG 227

Query: 208 ------FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPR 257
                 +P+  ++A   L  F +++  Y+    D           S L+P L+IG+L+P+
Sbjct: 228 NGQTIIYPVTHEDAQLWLTAFFEQRFKYFGRFEDAIVEGQNWLYHSVLTPMLNIGLLTPK 287

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           Q  ++  +   +  +   S        + WREF                 +    +  W 
Sbjct: 288 QVISQAIQCADEHEVDLASLEGFVRQIIGWREFM--------RATYSDIGVSMRTQNHWQ 339

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
               +  A+  G TG   +D  ++++   G+ H+  R++           +      +FM
Sbjct: 340 HKRKIPSAFYTGDTGIIPLDDTIKRILQTGYCHHIERLMVLGGFFFLCEFEPDEIYGWFM 399

Query: 378 SQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
              +D  D    SN     Q A      + PYF
Sbjct: 400 DMFIDSYDWVMVSNVYAMSQHADGGQITTKPYF 432


>gi|311900784|dbj|BAJ33192.1| hypothetical protein KSE_74370 [Kitasatospora setae KM-6054]
          Length = 504

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 9/173 (5%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LS  L++G+L P +C  R ++ +        S          WRE+   L  
Sbjct: 256 DPWMAHSLLSVPLNLGLLDPGECARRAEDAYRSGSAPLNSVEGFVRQVAGWREYVWQLYW 315

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +       +  +     +          A +        +  A+ Q+   GW+H+  R++
Sbjct: 316 YLGEEHRHRNALGHHAPLPDWFAELDADAVRA-----RCLSGALAQVRDTGWVHHIPRLM 370

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
                      D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 371 VLGNWALQHGYDPAAVTDWFHRCFVDGYDWVMVPNVVGMSQYADGGTVTTKPY 423


>gi|126655279|ref|ZP_01726718.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110]
 gi|126622758|gb|EAZ93463.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110]
          Length = 342

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 10/244 (4%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGPVTPSNIPRFFDYPFQ 202
                   + +      RK   QNL            I  ++   V    I  +      
Sbjct: 1   MEEDQPIGKKWNFDKQNRKPPKQNLNPPTPLWFEPDDITQQVIDDVKSYKIKTYGKIEPF 60

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                     Q   H L         Y             S +SPY+++G+L P +   +
Sbjct: 61  KWGVTRSQALQVLDHFLENNLNNFGTYQDAMITGEYTMWHSLISPYINLGLLRPLEVIQK 120

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +++ + D      S        L WRE+   +          K +    EK+        
Sbjct: 121 IEKAYHDFNYPLNSVEGLIRQILGWREYMYGIYQLMDDDYRDKNWFDHQEKLPEFY---- 176

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W    T    +   ++Q+   G+ H+  R++  S     + V  +   ++F S  +D
Sbjct: 177 ---WDSSQTDMNCLKQVLQQVEETGYGHHIQRLMVLSNFALIVGVSPQAINDWFHSAFID 233

Query: 383 -GDL 385
             D 
Sbjct: 234 GYDW 237


>gi|78212891|ref|YP_381670.1| photolyase family protein [Synechococcus sp. CC9605]
 gi|78197350|gb|ABB35115.1| photolyase protein family [Synechococcus sp. CC9605]
          Length = 498

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              +   S L+P L+IG+L+P+Q  +R  E      I   S        + WREF   + 
Sbjct: 259 QHQVMWHSVLTPMLNIGLLTPQQVLDRTLERAKAGDIPLNSLEGFLRQIVGWREFMAAMY 318

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +        F  + ++        +  A+    TG   ID A+R     G+ H+  R+
Sbjct: 319 RRHGVEMRNGNFWGFDDRP-------IPSAFYTASTGLAPIDDAIRHALETGYCHHIERL 371

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
           +    ++            +FM   +D  D     N  G  Q+A      + PY
Sbjct: 372 MLLGNVMLLCGFHPTRIYTWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPY 425


>gi|194702896|gb|ACF85532.1| unknown [Zea mays]
          Length = 376

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 90/346 (26%), Gaps = 48/346 (13%)

Query: 11  LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54
           + W+  D R+ DN                  L  A           F   P  +   G  
Sbjct: 29  VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            RQ  F+   L ++      +G+ F   +    +     L S   +   + L  +     
Sbjct: 77  LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131

Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168
                   + + L      +     D   ++P  +         K +      +I     
Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191

Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                   A        ++     +                +P      +  L     F 
Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFL 251

Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +++  Y   R+ P      S LSPYL  G +S ++C     E      + PKS      
Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             +I RE   +   + P          W  K   +      +    
Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYT 354


>gi|119486212|ref|ZP_01620272.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106]
 gi|119456703|gb|EAW37832.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106]
          Length = 501

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 78/290 (26%), Gaps = 8/290 (2%)

Query: 97  YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156
              +    +  +         +  K  ++ L      +S     +L            + 
Sbjct: 114 LSCRIDWLENNHFLWRIDEFKQWSKGRKRLLMEDFYRESRKRFNILMEDKQPIGNRWNFD 173

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
                      N                   V   ++P +      A         Q   
Sbjct: 174 SENRKPPKGKFNPPHPLWFEPDEITQATIEQVNQLSLPLYGKIEPFAWAVTRQQALQVLQ 233

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             +++       Y             + LSPYL++G+L P +     +  +    +    
Sbjct: 234 SFIQERLPNFGTYQDAMLTGEQTLWHALLSPYLNLGLLHPLEVIQAAENAYYQQNLPLNC 293

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
                   L WRE+ + +     +    + +   T+ +           W    T    +
Sbjct: 294 VEGFIRQVLGWREYMQGIYQLMDADYSQRNWFNHTQPLPEFF-------WDAEQTDMNCL 346

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
              + Q+ T G+ H+  R++  S       +  +  E +F +  +D  D 
Sbjct: 347 SQVLSQVETTGYAHHIQRLMVLSNFALITGLSPQEVENWFHAVFIDAYDW 396


>gi|86605777|ref|YP_474540.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86554319|gb|ABC99277.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 513

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 109/385 (28%), Gaps = 52/385 (13%)

Query: 38  IAVFIATPEQWRQHGISARQSH----FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           + V +     W     S          +++++    + L Q+G    Y +  ++ +    
Sbjct: 36  VPVLLVESHAWAS---SRNHHQQKLVLVWSAMRHFAQELQQRGHPVTYAEAEDYAEP--- 89

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L ++  Q R+ ++   +  +I      + L   L   ++    +  +      I   + +
Sbjct: 90  LQAWARQHRLQQIRLMQPTDIPVRDEVEKLRSALPCPLLVLENNHFLWTARQFIDWASGR 149

Query: 154 M----------------------YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                                    +   +             R  P P       +T +
Sbjct: 150 KRLLLEDFYRQGRKRFRILMDGSQPLGGRWNYDRENRQPPQPGRRYPPPLTFPPDAITQA 209

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQRDIPAIQGTSQ- 244
            + +   +       +   G                  +   +   +             
Sbjct: 210 VMEKVRRHYGHHFGSLEGFGWAVTRAQALQVLEDFIQHRLPHFGPWQDAMQVEEDFLYHS 269

Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--SV 301
            LSPYL++G+L+P++     ++ +    I   S        L WRE+ R    +      
Sbjct: 270 LLSPYLNLGLLTPQEVITAAEQAYHRGGIPLPSAEGFIRQILGWREYMRGFYEYQMPQGY 329

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F  +    ++        A          +   +RQ+   G+ H+  R++  S  
Sbjct: 330 AQTNFFGHYRPLPDFFWTGETDMA---------CLRHTLRQIRRHGYAHHIQRLMVLSNF 380

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL 385
                +  +  E +F    +D  D 
Sbjct: 381 ALISGIQPQAVEAWFHDVFIDSYDW 405


>gi|123965722|ref|YP_001010803.1| hypothetical protein P9515_04871 [Prochlorococcus marinus str. MIT
           9515]
 gi|123200088|gb|ABM71696.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9515]
          Length = 496

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P++  N+         +   S        + WREF   +   + +
Sbjct: 262 WHSLLSPLLNSGLLTPKEVINKALTFAEKNKVPMNSLEGFIRQIVGWREFICLVYEKHGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F          +++ +   +  G TG   +D  +  +   G+ H+  R++    
Sbjct: 322 KMRTTNF-------WNFENNPMPDVFYTGNTGIEPVDIVINNIIKYGYCHHIERLMIVGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPDQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|72382565|ref|YP_291920.1| hypothetical protein PMN2A_0726 [Prochlorococcus marinus str.
           NATL2A]
 gi|72002415|gb|AAZ58217.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 496

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 98/337 (29%), Gaps = 32/337 (9%)

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
           +  I  +  +   F    +  +    Q+++  +                     Q     
Sbjct: 116 KNNIKLEIRKNDMFLTCPDISEEILNQKKIYGM---------------------QKFYKI 154

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
           +    ++L+            +      +      + +           +    V+ +  
Sbjct: 155 QRKSLNILIEKDGSPTGGAWNFDNMNRKKLPNSIEVPKIPTIKTNRLLNKAKKEVSTNYK 214

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
             +               E+   + L +       Y             S LSP ++ G+
Sbjct: 215 DYYGRIANFNYPLSHKDAEEWLDNFLIERFNLFGDYEDAIHSNHRTLWHSVLSPLINSGL 274

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L+PRQ  ++  E +    I   S        + WREF   +            F  + +K
Sbjct: 275 LTPRQIIDKSWEFYQSNNIGINSYEGFVRQIIGWREFILLMYKRNSLELRNGNFWDFEDK 334

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                   +  ++  G TG   +D ++R +   G+ H+  R++    L+           
Sbjct: 335 P-------IPLSFYTGQTGIRPLDDSIRNILETGYAHHIERLMIVGNLMLLCRFHPNQVY 387

Query: 374 EYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
           ++FM   +D  D     +  G  Q++      + PY 
Sbjct: 388 KWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYI 424


>gi|284431214|gb|ADB84374.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
          Length = 123

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           + W+  D R+ DN A+  A   ++A+ + +++      R    S RQ HF+
Sbjct: 72  VYWMSRDSRVQDNWAMIYAQELANAQNLPLYVVFCLTKRFLNASLRQFHFL 122


>gi|86609405|ref|YP_478167.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557947|gb|ABD02904.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 525

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 104/380 (27%), Gaps = 42/380 (11%)

Query: 38  IAVFIATPEQWRQHGISARQSH----FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           + V +    +W     S          +++++    + L Q+G    Y +  ++ + ++ 
Sbjct: 36  VPVILIESHRWAS---SRNHHQQKLVLVWSAMRHFAQELQQRGYPVTYVEADSYAEPLQT 92

Query: 94  LDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP------- 144
                   Q R+ +       +  E  R  L    L        +     +         
Sbjct: 93  WAKQHQLQQIRLMQPADIPVRDEIEKLRSTLPCPLLILENNHFLWTADQFIEWASGRKRL 152

Query: 145 ----------GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                                 +   +                P P       +T + I 
Sbjct: 153 LLEDFYREGRRRFRILMDGPKPLGGRWNYDRENRHPPKPGMRYPRPLTFSPDAITQAVIA 212

Query: 195 RFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +   +       +   G         Q   H + +       +    +        S LS
Sbjct: 213 KVRQHYGHHFGSLEGFGWAVTRAQALQVLDHFIHERLPHFGPWQDAMQAGEDFLFHSLLS 272

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+L+P +    +++ +    I   S        L WRE+ R    +       + 
Sbjct: 273 PYLNLGLLTPHEVIAAVEQAYHRGGIPLPSAEGFIRQILGWREYMRGFYEYQMPNGYAQN 332

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                ++               G T    +   + Q+   G+ H+  R++  S       
Sbjct: 333 NFFGHQRPLPEFFW-------TGKTDMACLQHTLDQIRRHGYAHHIQRLMVLSNFALISG 385

Query: 367 VDWRIGEEYFMSQLLD-GDL 385
           +  +  E +F    +D  D 
Sbjct: 386 IQPQAVEAWFQDVFIDSYDW 405


>gi|213422286|ref|ZP_03355352.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 161

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC 223
            ++ L +     +P P IR++G ++    P   +YP QA D   FP+ E   +  LR FC
Sbjct: 1   WLKRLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFC 60

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            +    Y  +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLN
Sbjct: 61  SQGADEYASRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLN 118

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           ELIWREFYRHLM +YP++C  +PFI WT+++ W ++ H
Sbjct: 119 ELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPH 156


>gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
 gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
          Length = 484

 Score = 46.0 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 66/443 (14%), Positives = 128/443 (28%), Gaps = 40/443 (9%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSH-FIYASLLQVQKSL 72
            D R + N AL  A   ++   + + +           GI   +   F      ++ ++L
Sbjct: 42  RDARTSCNDALARATRMANGFGVPLVVAMHVGRDLSGRGIGGARRAVFGLEGRRELDEAL 101

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
             +G      + +  DD+   +   C     + +  +             + + L+  V+
Sbjct: 102 RGRGAA---TRTTIGDDAALGVLETCEAVNASAVVCDFTPLREGRATRATIARALECPVV 158

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFR--------KALIQNLVQADLRSLPVPAIRL 184
                + V     S               +          ++ +LV     SL       
Sbjct: 159 EVDAHNVVPAWVASDKQEYAARTIRPKIRKKLDEFLTAPTVMDDLVVRAAGSLAQMETDW 218

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TS 243
              V  +            I P       + L                +R+ P      S
Sbjct: 219 AALVADARANGAHVPEVHWIKPGEKAALASLLDPSVDSFLPDRLALYGERNKPTSPRAVS 278

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301
           +LSPYL+ G L+PR+      +    +  +        L  +I RE   +   + P    
Sbjct: 279 RLSPYLNHGQLAPRRAAWEAVQLRGIVADEAIDSYLEEL--IIRRELSDNFCLYNPDYDS 336

Query: 302 ----CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                            +  +  +     ++  T   + +AA ++L  +G MH  +RM  
Sbjct: 337 LRGASQWAQDSLALHASDKREYVYDYATLERAKTHDELWNAAQKELYHLGRMHGFMRMYW 396

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG------DLASNNGGWQW-AASTGNDSV------P 404
           A  +++               QL D       D  +   G  W  A   +          
Sbjct: 397 AKKILEWT--PSPEIALETAIQLNDTYALDGLDP-NGYVGCMWSIAGVHDQGWKERAVFG 453

Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427
             R  N     ++FD  G ++R 
Sbjct: 454 KVRYMNYAGCKRKFD-IGEYVRR 475


>gi|312093850|ref|XP_003147827.1| hypothetical protein LOAG_12265 [Loa loa]
 gi|307757007|gb|EFO16241.1| hypothetical protein LOAG_12265 [Loa loa]
          Length = 171

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
            +     V+  +I  P    +H +   Q  F+   L  ++ +LS+        + +N  +
Sbjct: 42  ANEHGVPVLVTYIYQPG--NRHNL--AQRKFLLEGLNCLENNLSRLHAPLLVIKANNNQE 97

Query: 90  SIEWLDSY 97
           + + +   
Sbjct: 98  ATKIVLKL 105


>gi|114705215|ref|ZP_01438123.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506]
 gi|114540000|gb|EAU43120.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506]
          Length = 511

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 51/379 (13%), Positives = 116/379 (30%), Gaps = 46/379 (12%)

Query: 42  IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYC 98
           +A    + +H    R+  F+++++      + ++ +   Y       N     E L    
Sbjct: 33  VADEANYVRHH--QRKIAFLFSAMRHFADDIRERDVTVDYVTLDDAENTGSFTEELKRAV 90

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
            + +   +      E   +   +   + L   V  ++ D  +                  
Sbjct: 91  KRHQPDSVVVTEPGEWRVLEMMRDWRETLDCPVEIRNDDRFICDHETFDKWAEGNKELRQ 150

Query: 159 TPFRKALIQN-------------LVQADLRSLPVPAIRLTGPVTPSNI------------ 193
             F + + +                  D  +      R+T P  P+              
Sbjct: 151 EYFYREMRKYTSYLMDGNKPAEGKWNFDHDNREPLKKRITAPERPNYTVDETTEAVLDLV 210

Query: 194 -PRFFDYPFQAIDPMFPIGEQNALHILRKFC----KEKVYYYVEQRDIPAIQGTSQLSPY 248
             RF ++     +  +P+  + ALH LR F      +   Y    R+   +   S LS  
Sbjct: 211 GKRFGNHFGSLENFDYPVTRRQALHYLRWFLDEALPDFGTYQDAMREGAPLLFHSHLSAL 270

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF-YPSVCMGKPF 307
           ++ G+L PR+   R ++ + +      +        + WREF R +     P        
Sbjct: 271 INCGLLDPREVCERAEDAYREGKAPINAVEGFIRQIIGWREFIRGVYWREMPDYASSNKL 330

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               +  ++            G T    +  + +++    + H+  R++           
Sbjct: 331 NAQRKLPDFFW---------TGETDLNCLKQSFKEVRESAYNHHIQRLMVIGNFCLLCGF 381

Query: 368 DWRIGEEYFMSQLLD-GDL 385
           D R  +E+++    D  + 
Sbjct: 382 DPREVQEWYLVVYHDAYEW 400


>gi|254381685|ref|ZP_04997049.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340594|gb|EDX21560.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 525

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C  R +  +        S          WRE+  HL  ++   
Sbjct: 282 HSLLSAPLNLGLLHPAECVERAEAAWRAGEAPLNSVEGFVRQIAGWREYVWHLYWYFGEE 341

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +  T  +    D     A          +  A+RQ+   GW H+  R++     
Sbjct: 342 YRRSNALRHTAPLPSWWDELDADA-----VTARCLSTALRQVRDTGWTHHIPRLMVLGSY 396

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 397 ALQRGWDPEALTDWFHRSFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 444


>gi|81299980|ref|YP_400188.1| hypothetical protein Synpcc7942_1171 [Synechococcus elongatus PCC
           7942]
 gi|23957791|gb|AAN40804.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168861|gb|ABB57201.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 503

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 125/437 (28%), Gaps = 48/437 (10%)

Query: 23  NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF-Q 80
           + AL   A   S  +++ V   + E  ++     ++   +++++      L  +G     
Sbjct: 16  HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQGWTVDY 73

Query: 81  YHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
             Q  +F  ++          + +V +        I            L +     S  +
Sbjct: 74  VEQADSFQTAVSAWCQQYQIAELQVMEPADRSFRAIISSLELTSSLHWLSNCQFLWSTAE 133

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                           Y+      + L+    +               P T    P    
Sbjct: 134 FTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTGLQPPPAAH 193

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------------------ 234
           +   AI        ++    L    +   +     +                        
Sbjct: 194 FLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTFGPYQDAMV 253

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              A    S ++P L++G+L P +   + ++ F +      S        L WRE+   L
Sbjct: 254 SGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQAPIASVEGFIRQILGWREYMYGL 313

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             ++P       +      +           W  G T    +    +Q+  IG+ H+  R
Sbjct: 314 HHYFPDTYGQSNWFEHDRPLPEFF-------W-TGQTDLHCLQQCFQQIEAIGYSHHIQR 365

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTG-------NDSVP 404
           ++  +       +D    +E+F +  LD  D    +N  G    A  G         S  
Sbjct: 366 LMILANFALIAGLDPWAVKEWFQATHLDAYDWVMETNVLGMGLFADGGKLASKPYAASAN 425

Query: 405 YFRIFNPTIQGKRFDPQ 421
           Y    +   Q  R+DP+
Sbjct: 426 YINRMSNYCQNCRYDPK 442


>gi|332307203|ref|YP_004435054.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174532|gb|AEE23786.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 496

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 94/352 (26%), Gaps = 22/352 (6%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L    I          D     L                 ++       +      +
Sbjct: 82  QTRLFTLLIDHGVRHIHTLDPVDYLLKKRLEDNAYRADLQITWHKTPGFLNTQRQNSAYR 141

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                    D        +         V   +                 +P +      
Sbjct: 142 EHKNRWYMADFYQFQRKRMNILVENDQPVGGRWSYDHENRKKIPKRDLDKIPTMEFASKT 201

Query: 189 TPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PA 238
           +           +F  +P      ++P+  Q+A   L  F +++   +    D      +
Sbjct: 202 SYHVAAIARLQKQFSHHPGNGQKIIYPVTHQDAQQWLDSFFEQRFRQFGPYEDAIVEGQS 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S L+P L+IG+L+P+Q  +          I   S        + WREF        
Sbjct: 262 WLYHSILTPMLNIGLLTPKQVISHALRYAKQHDISLASVEGFIRQIIGWREFM------- 314

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    +       W     +  ++ +G TG   +D  ++++   G+ H+  R++  
Sbjct: 315 -RATYNDLGVSMRTANHWQHHRTISASFYRGDTGIDPVDDTIKRILQTGYCHHIERLMVL 373

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406
                    +      +FM   +D  D     +     Q A      + PYF
Sbjct: 374 GGFFFLCEFEPNEIYRWFMDMFVDSYDWVMVPNVYAMSQHADGGQITTKPYF 425


>gi|119713715|gb|ABL97765.1| hypothetical protein MBMO_EB0-41B09.0035 [uncultured marine
           bacterium EB0_41B09]
          Length = 508

 Score = 45.2 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 93/327 (28%), Gaps = 17/327 (5%)

Query: 66  LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             + K + +K I   QY +   +  SIE L      + +     + ++        K   
Sbjct: 84  QNINKIIKEKNIGTLQYLEPDEYRLSIE-LKKLESIKNIKVESVDTEHFFVPKFYAKDFF 142

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +H  + + + +        +        K           +                
Sbjct: 143 SEKKHWRMEEFYRNMRKKFSILMEGDKPIGEKWNFDSDNRKRWDGSPNTTEDFRPSHNHE 202

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQ 240
              +  +N         Q  +  +PI  + +     + + K       +     D     
Sbjct: 203 ELFLEINNENIEHFGESQETNFRWPISREESVKLLDNFIAKDLVNFGDFQDALHDKNWRL 262

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYP 299
             S LS  L+  ++SP +   + +E + +  +   S        L WRE+ R    A  P
Sbjct: 263 FHSFLSFSLNSKMISPLEVIRKAEEAYYEKDLPLSSVEGFIRQILGWREYIRGVYWANMP 322

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  F    +  +W                   +  ++ Q     + H+  R++   
Sbjct: 323 GYDQHNFFKHNAKLPDWFWTGKTDMR---------CLSLSITQSLKNAYAHHIQRLMIIG 373

Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                  +D +   ++++   +D  + 
Sbjct: 374 NFSLLAGLDPKEVHKWYLGIYIDAYEW 400


>gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni]
 gi|238657317|emb|CAZ28395.1| DNA photolyase, putative [Schistosoma mansoni]
          Length = 490

 Score = 45.2 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 62/402 (15%), Positives = 117/402 (29%), Gaps = 30/402 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV--------FIATPEQWRQHGISARQSHFIY 62
           L W+  D R+  N     A       V  V        FIA PE       S  +  +  
Sbjct: 58  LYWMSRDQRVQGN-----AIQGYTFFVFLVLLISKEIIFIAQPEDIS----SGCKHRWSD 108

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            + L  Q    +K  +++ +   +  D    L        +   F   +   + V++   
Sbjct: 109 ENALFNQTDRIEKNFLYETYVAKSVVD----LAKLLNVGCLVTDFCPLRAPRSWVKKVTD 164

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                       + +   +        ++ +  +     +           ++      I
Sbjct: 165 ELPDNIPFCEVDAHNIVPVWCGSEKREYSARTIRSKLFQQSPKFLTDFPPIIKHTCSDKI 224

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +  P              +++ P      G Q  L +L +F  +++  +   R+ PA  
Sbjct: 225 TVLPPPVNWESILSDYVGDKSVKPVDWAVPGTQAGLEVLYEFISKRLKKFDPHRNDPAHP 284

Query: 241 GTSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             S LSP+L  G ++P R     +  +              +    +   F  H   +  
Sbjct: 285 ALSGLSPWLHFGQIAPQRAVLEVVAVQKHFGRSADIFIEECFNRRELAENFCFHTPFYDS 344

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                            +K        +     TG  + +AA RQL   G MH  LR   
Sbjct: 345 IKGAYDWARESLMTHSTDKRDPAYSKTQMETAQTGDDLWNAAQRQLVLKGKMHWFLRQYW 404

Query: 358 ASFLVKDLLVDWRIGEEYFMS----QLLDGDLASNNGGWQWA 395
           A  +++          +  +       LDG   +   G  WA
Sbjct: 405 AKKILEWCAEGPESAIQIAIYLNDRYSLDGTDPNGYVGIMWA 446


>gi|118594164|ref|ZP_01551511.1| hypothetical protein MB2181_00810 [Methylophilales bacterium
           HTCC2181]
 gi|118439942|gb|EAV46569.1| hypothetical protein MB2181_00810 [Methylophilales bacterium
           HTCC2181]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 112/361 (31%), Gaps = 22/361 (6%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             Q +F    L  ++  + QK I     Q  +       L        +     + ++ +
Sbjct: 81  ENQHNF----LDNLRAIIHQKKIDVLEFQDPDEHRLDLLLGQLKHSLNIPVERISTEHFL 136

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                  L     +   +   +    +     I   +    K        +  +    + 
Sbjct: 137 TSRDEVGLFFTDKKQWRMESFYRYMRIKHEVLIEGGSPIGGKWNYDASNRMRWDGKPPEP 196

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                           +++         A +  +PI  + +  +L +F K  + Y+ + +
Sbjct: 197 EDSRPKHNHKELLEEINSVNIEHFGEANAENFRWPIDRKESFALLEQFIKNNLRYFGDFQ 256

Query: 235 DIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           D           S LS  L+  +L+P +    ++  +++  I   +        L WRE+
Sbjct: 257 DAMHSDSWRLFHSFLSFSLNTKMLAPLEVIKMVEVSYLEDSIPLNAVEGFIRQILGWREY 316

Query: 291 YRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            R +     P       F   T+  +W            G T    + +++ Q  T  + 
Sbjct: 317 IRGIYWAKMPEYSHLNYFNYDTDLPKWFW---------TGKTKMNCLASSITQSLTHSYA 367

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           H+  R++          +D +    +++   +D     +L +  G  Q+A      + PY
Sbjct: 368 HHIQRLMVIGNFSLLAGIDPQKVHYWYLGIYIDAFEWVELPNTIGMSQYADGGLLATKPY 427

Query: 406 F 406
            
Sbjct: 428 V 428


>gi|120613151|ref|YP_972829.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax citrulli
           AAC00-1]
 gi|120591615|gb|ABM35055.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax
           citrulli AAC00-1]
          Length = 533

 Score = 44.8 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 110/415 (26%), Gaps = 58/415 (13%)

Query: 20  ITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79
           + D  AL AA               P +         +          +    +  G+  
Sbjct: 99  LAD--ALRAAIRTHR----------PRRLVMTAPGDWRVW------KALSAVAADAGLPL 140

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
           +     +F  ++     +  Q     L     Y     R   L++ R           D+
Sbjct: 141 ETRPDRHFFATVREFADFRRQLAGRPLRLETFYRAMRRRHGILMDGRQPEGGAWNYDKDN 200

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
                         +         A+ + ++Q   R        L     P    +    
Sbjct: 201 RRPFG---PQGPGMVPGRCRFEPDAITREVLQMVARRFGDHPGALESFAWPVTRAQALHA 257

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
               +D   P        +                        S LS  L++ ++ PR+ 
Sbjct: 258 LADFVDHRLPAFGPFQDAMWPGEPWLYH---------------SHLSAALNLKLIHPREV 302

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
               +  +    +   S        L WRE+ R +              P          
Sbjct: 303 VAATEAAYRSGRVPLASAEGFIRQILGWREYVRGIYWTEM---------PSYRDRNALGA 353

Query: 320 SHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L AW   G T F  +  A+RQ    G+ H+  R++        L V  +    ++++
Sbjct: 354 DAPLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRPQAVHAWYLA 413

Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRFDPQG 422
             +D     +L +  G  Q+A      S PY        R+  P     R DP  
Sbjct: 414 VYVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCA-TCRHDPDA 467


>gi|70939369|ref|XP_740236.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517812|emb|CAH84909.1| hypothetical protein PC301304.00.0 [Plasmodium chabaudi chabaudi]
          Length = 204

 Score = 44.8 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 11/165 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I   EQ+       R  +     L 
Sbjct: 34  LLLLTRDFRIADNWSIIYAHDLAKKNKCNLLACTYINRKEQFT-----ERHINIKLKVLK 88

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++   +  I F        D+ +E+L     + +     ++      +   + +    
Sbjct: 89  NLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IQEIKTVVCDFHPLEYQKQFVENLVHMSN 146

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            +   + +    +++    +          +    +  L   L++
Sbjct: 147 KKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIE 191


>gi|311747651|ref|ZP_07721436.1| photolyase protein [Algoriphagus sp. PR1]
 gi|126575637|gb|EAZ79947.1| photolyase protein [Algoriphagus sp. PR1]
          Length = 493

 Score = 44.8 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 118/403 (29%), Gaps = 44/403 (10%)

Query: 40  VFIATP-EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +++      ++Q+    ++  F  AS+   Q+ L +KG    Y   ++    I    +  
Sbjct: 26  IYLIEEFLFFKQYNFHKQKIAFHRASMKAFQRFLEKKGNKVHYIDSNSELSDIRNFSNEI 85

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
            Q+++ ++      +    +R K +               +     G       + +   
Sbjct: 86  DQKKIKEVHCIDPVDDWLEKRIKKMAGSCDLTFYENPAFLNSKKDLGGFFKPDKKSFFQT 145

Query: 159 TPFRKALIQNLV-------------------QADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
           T +++   +  +                   +        P        T          
Sbjct: 146 TFYKQQRKKRKILLDKNQDPEGGSWTYDKENRKKYPKGKTPPPIQFPDATGFWEEACSYT 205

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------DIPAIQGTSQLSP 247
                D    + +Q    I  +  +     +++ R               +    S LSP
Sbjct: 206 KKYFQDNPGKLNKQPIYSINTEQAEAWFKQFLKSRFHEFGTYEDAIVKEESYLNHSLLSP 265

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            +++G L P               +   S        + WREF R +     S    K F
Sbjct: 266 LINVGFLLPEFVLEDSLTFAKSENVPINSTEGFVRQIIGWREFIRGMYESKGSFSRTKNF 325

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                   W     +  ++  G TG   +D  ++++   G+ H+  R++     +     
Sbjct: 326 --------WGFKRKIPASFYDGSTGIEPVDQTIKKVLETGYCHHIERLMILGNFMLLCEF 377

Query: 368 DWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           D      +FM   +D  D     N  G  Q+A      + PY 
Sbjct: 378 DPDEVYRWFMELFIDAYDWVMVPNVYGMSQFADGGLFATKPYV 420


>gi|269795906|ref|YP_003315361.1| deoxyribodipyrimidine photolyase-like protein [Sanguibacter
           keddieii DSM 10542]
 gi|269098091|gb|ACZ22527.1| deoxyribodipyrimidine photolyase-related protein [Sanguibacter
           keddieii DSM 10542]
          Length = 532

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S L+  L++G+L PR+    + +          +G  + L  +            Y   
Sbjct: 290 HSLLTASLNVGLLDPREVVQAVLD---------DAGPDTPLASVEGFVRQVIGWREYMRA 340

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                          +  + L   W+   TG   +D  + ++ T G+ H+  R++     
Sbjct: 341 TYRVHGRRMRTSNRLDHQNRLGDGWRDATTGLAPVDLVVSRVLTTGYAHHIERLMVLGSA 400

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +  L V      E+F +  +D  D     N     Q+AA     + PY 
Sbjct: 401 MCLLRVHPDEVYEWFTAMFVDAYDWVMVPNVYAMSQFAAGDAVTTKPYV 449


>gi|220934569|ref|YP_002513468.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995879|gb|ACL72481.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 524

 Score = 44.8 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 48/416 (11%), Positives = 111/416 (26%), Gaps = 61/416 (14%)

Query: 19  RITDNK--ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           R+  +   +L  A     A++       PE+         +       L  + +     G
Sbjct: 85  RLGHHPHGSLAEALATDLARLR------PERVILTRPGDHRV------LQSLTRVCDSAG 132

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           +  +  + ++F  S+E    +  +++       +    +  R  +     L         
Sbjct: 133 VPLEIREDAHFLVSLESFRHWAGRRK-------QTRLEHFYRHVREQMGVLMEDGEPAGG 185

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
             +        L  A           +     L +  +  +        G +   + P  
Sbjct: 186 RWNFDTENRKPLPRAGPGMLRAPLGFEP--DALTREAMADVERHFPDHPGSLASFDWPVS 243

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
            +    A++                    + + Y  +               L++ ++SP
Sbjct: 244 PEQARAALEDFIDHRLPAFGPYQDALWTGEPWLYHARIS-----------AALNLKLISP 292

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYPSVCMGKPFIPWTEKIE 315
           R+     +  + +      S        L WRE+ R       P                
Sbjct: 293 REVIEAAEAAWREGRAPLASVEGFIRQVLGWREYVRGLYWQHMPEWLEWNALEAGEALPG 352

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           +                   +   + Q   +G+ H+  R++      + L V      E+
Sbjct: 353 FYWTGETDMR---------CLAETLGQTLELGYAHHIQRLMVTGLFAQLLGVRPPALHEW 403

Query: 376 FMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +++  +D     +L +  G  Q+A      S PY                G +I+ 
Sbjct: 404 YLAVYVDAVEWVELPNTLGMSQYADGGRMASKPYV-------------ASGQYIKR 446


>gi|319954985|ref|YP_004166252.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           algicola DSM 14237]
 gi|319423645|gb|ADV50754.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           algicola DSM 14237]
          Length = 493

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 56/415 (13%), Positives = 114/415 (27%), Gaps = 50/415 (12%)

Query: 34  DAKVI----AVFIATP-EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC-SNF 87
           ++ V+     +++      ++ +    ++  F  AS+   +  L        Y +   + 
Sbjct: 15  NSPVLEFDAPIYLIEEYLFFKHYKFHKQKIAFHRASMKCYEAFLKANNHEVIYIEATEDV 74

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-------------------RDKLLEKRLQ 128
            D    +     +      +          R                        E    
Sbjct: 75  SDIRTLIKQLNKEGINQLNYIEVSDYWLRKRIEETSKAYTITLKEFDSPLFINNKEDLTH 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIRLTGP 187
                K                 + + K   P           +    +   P       
Sbjct: 135 FFKKDKKSFHQTTFYKQERKRLGILVDKNDEPMGGKWTYDTENRKKYPAKKTPPSIHFPE 194

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------D 235
           VT  +            D    + ++    I  +  K     ++EQR             
Sbjct: 195 VTTYHKEAKEYVDLHFSDHYGALTKEVYYPIDFEAAKVWFDQFLEQRFSEFGIYEDAIVG 254

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             +I   S ++P L++G+L+P    +          I   S        + WREF R + 
Sbjct: 255 ENSILNHSVITPMLNVGLLTPHLIIDTTIAYAEKHDIPINSLEGFVRQIIGWREFMRGMY 314

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                    + F        W     + +++  G TG   ID  ++++   G+ H+  R+
Sbjct: 315 ELKGVYQRTRNF--------WGFTRKIPKSFYTGTTGIVPIDTTIKKILKTGYCHHIERL 366

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +     +     D     ++FM   +D  D     N  G  Q+A      + PY 
Sbjct: 367 MVLGNFMLLCEFDPEEVYKWFMELFIDSYDWVMVPNVYGMSQFADGGSFATKPYI 421


>gi|254432578|ref|ZP_05046281.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC
           7001]
 gi|197627031|gb|EDY39590.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC
           7001]
          Length = 527

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 15/158 (9%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
               LSPYL++G+L P +   RL++   +      S        L WRE+   L  ++ S
Sbjct: 272 WHGLLSPYLNLGLLHPLEVIQRLEQAGRERGTPLASLEGVIRQILGWREYTHGLYHWFGS 331

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +        +    +S        G +G   +++   +L T G+ H+  R++  + 
Sbjct: 332 DYPARNHFQHHRPLPPWFES-------LGGSGLNCLESVFAELATSGYAHHIQRLMVLAN 384

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
                 +D +    +F    +D        G  W   T
Sbjct: 385 YGLIAGLDPQALTAWFHRMFID--------GHDWVMQT 414


>gi|225872026|ref|YP_002753480.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794372|gb|ACO34462.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum
           ATCC 51196]
          Length = 548

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 105/370 (28%), Gaps = 23/370 (6%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
           + A   +   +  ++  TP  +      A + H +  +L  +Q   +++ +     +   
Sbjct: 76  HFALKQARRGIKIIYEFTPGIFADGLEQATRHHRLS-ALTMMQP--AEREMSLDVEEARV 132

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
               ++ ++            +       +       +  L  R   +    + +L   +
Sbjct: 133 RGIPLQLVED---------TTWCSTESDFDSVFAPTTKHFLMDRFYRRMRQKTGILMQPN 183

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
                 +        R    Q  V    R  P    +    +     P  F        P
Sbjct: 184 GEPIGGKYSYDAENRRPYRGQPPVPERPRFHPDSITQEALHLVAREFPSHFGTLDGFDLP 243

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKE 265
           +       A     +        + +           S+LS  ++I  L PR+  + +  
Sbjct: 244 VTQAQADEAWSFALEHLLPHFGPFEDAMAHNEPDLFHSRLSALINISRLLPRRLIDDVAR 303

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL--- 322
                 I   S        L WREF RHL                +   +    +     
Sbjct: 304 AAHSERIPLASAEGFIRQILGWREFMRHLHRRTDGYRQLPGQRNNSSSDDPYAGAEPSAL 363

Query: 323 ------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                   A+    +G   +D  + Q+   GW H+  R++  S L   L V  R   ++F
Sbjct: 364 NAHRPLPAAFWGRRSGLHCLDTVIDQVWREGWSHHITRLMVLSNLSTLLGVSPRALTDWF 423

Query: 377 MSQLLD-GDL 385
               +D  D 
Sbjct: 424 WIAYIDAYDW 433


>gi|258405943|ref|YP_003198685.1| deoxyribodipyrimidine photolyase-like protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257798170|gb|ACV69107.1| deoxyribodipyrimidine photolyase-related protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 502

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 77/276 (27%), Gaps = 12/276 (4%)

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                 +L          +        ++   +  V         P          +   
Sbjct: 153 MRKRCQILLDDHGKPLGGKWTFDTANRKRYRGEPPVPDLPHLTGGPEKDSALDRVRNEFA 212

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
                P   +       +      + +       +             S L+  L+IG+L
Sbjct: 213 NHPGEPDLTMPWTHAQAQAWLEDFVDRRLPSFGPFQDALSSKEPFLFHSLLASSLNIGLL 272

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           +P Q  + +  +     +   S        L WREF R +   +        F   +  +
Sbjct: 273 TPNQVLDTVLAKHRQSPLPLASLEGFVRQILGWREFVRGMYRHHGRRQRSTNFWGHSRPL 332

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                     A+    TG P +D A+++  +  + H+  R++     +    +       
Sbjct: 333 PE--------AFYTASTGIPPVDLAIQRALSNAYCHHIERLMVLGNFMLLCEIAPDDICT 384

Query: 375 YFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +FM   +D  D     N  G  Q+A      S PY 
Sbjct: 385 WFMEMCIDSYDWVMVPNVYGMSQYADGGLMSSKPYI 420


>gi|239981847|ref|ZP_04704371.1| hypothetical protein SalbJ_20596 [Streptomyces albus J1074]
 gi|291453703|ref|ZP_06593093.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291356652|gb|EFE83554.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 510

 Score = 44.4 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 9/155 (5%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P +C  R +  +        S          WRE+  HL   +         +     +
Sbjct: 280 DPAECVERAEAAWRAGEAPLNSVEGFVRQIAGWREYVWHLYWHFGEEYRTTNALGHHAPL 339

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                     A          +   + QL   GW H+  R++           D     +
Sbjct: 340 PDWWSDLDADA-----VTAHCLSTVLAQLRDTGWTHHIPRLMVLGNYALQRGWDPAALTD 394

Query: 375 YFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405
           +F    +D  D     N  G  Q+A      + PY
Sbjct: 395 WFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 429


>gi|171915248|ref|ZP_02930718.1| deoxyribodipyrimidine photolyase-related protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 514

 Score = 44.4 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 109/351 (31%), Gaps = 18/351 (5%)

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+++++ +          +        ++S   +  V       ++ I      +   +
Sbjct: 87  KQLREAIRRLRPKKLVMVEAGEWSVACEIESVAAKTGVELEVRTDRHFICTREMFQKHAE 146

Query: 126 RLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +   +   + +                  +      R++  ++     +  +      
Sbjct: 147 GRKQLRMEFFYREVRQHTGVLMEKGKPVGGQWNFDHDNRESFGKSGPGLRMPPMRFVPDD 206

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
           LT  V       F  +P    +  +P+    A   L  F K ++  +   +D        
Sbjct: 207 LTKGVIADVEKHFAKHPGALAEFDWPVTTVQARKALDDFIKHRLAEFGSFQDAMWTNEPW 266

Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S+LS  +++ +L PR+     ++ + +      +        L WRE+ R +     
Sbjct: 267 LYHSRLSAAMNLKLLDPREVIAAAEKAYHEGRAPLAAVEGFIRQILGWREYVRGIYCH-- 324

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  +I        ++          G T    +  A+ Q   +G+ H+  R++   
Sbjct: 325 ---FMPDYIERNAMHAEHELPDFYW---TGDTEMNCLRDAIGQTLRLGYAHHIQRLMVTG 378

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
                  V  R   E++++  +D     +L +  G  Q+       S PY 
Sbjct: 379 LFALLYGVQPRRVHEWYLAVYVDAVEWVELPNTLGMSQYGDGGVMASKPYV 429


>gi|56750388|ref|YP_171089.1| hypothetical protein syc0379_d [Synechococcus elongatus PCC 6301]
 gi|56685347|dbj|BAD78569.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 503

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 125/437 (28%), Gaps = 48/437 (10%)

Query: 23  NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF-Q 80
           + AL   A   S  +++ V   + E  ++     ++   +++++      L  +G     
Sbjct: 16  HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQGWTVDY 73

Query: 81  YHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
             Q  +F  ++          + +V          I            L +     S  +
Sbjct: 74  VEQADSFQTAVSAWCQQYQIAELQVMDPADRSFRAIISSLELTSSLHWLPNCQFLWSTAE 133

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                           Y+      + L+    +               P T    P    
Sbjct: 134 FTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTGLQPPPAAH 193

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------------------ 234
           +   AI        ++    L    +   +     +                        
Sbjct: 194 FLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTFGPYQDAMV 253

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              A    S ++P L++G+L P +   + ++ F +      S        L WRE+   L
Sbjct: 254 SGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQAPIASVEGFIRQILGWREYMYGL 313

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             ++P       +      +           W  G T    +    +Q+  IG+ H+  R
Sbjct: 314 HHYFPDTYGQSNWFEHDRPLPEFF-------W-TGQTDLHCLQQCFQQIEAIGYSHHIQR 365

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTG-------NDSVP 404
           ++  + L     +D    +E+F +  LD  D    +N  G    A  G         S  
Sbjct: 366 LMILANLALIAGLDPWAVKEWFQATHLDAYDWVMETNVLGMGLFADGGKLASKPYAASAN 425

Query: 405 YFRIFNPTIQGKRFDPQ 421
           Y    +   Q  R+DP+
Sbjct: 426 YINRMSNYCQNCRYDPK 442


>gi|87303557|ref|ZP_01086340.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
 gi|87281970|gb|EAQ73933.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
          Length = 504

 Score = 44.4 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           WN    L   W  G TG P +DAA+ +LN  G+ H+  R++  S L+    +     + +
Sbjct: 334 WNHRRRLAPCWTDGSTGLPPLDAAIERLNRTGYNHHIERLMVISNLMLLCEIHPAEVQRW 393

Query: 376 FMSQLLD-GDLASN---NGGWQWAASTGNDSVPYF 406
           FM + LD  +        G  Q +      + PY 
Sbjct: 394 FMERYLDSYEWVMGPNVYGMGQMSDGGIFATKPYI 428


>gi|258652969|ref|YP_003202125.1| deoxyribodipyrimidine photolyase-like protein [Nakamurella
           multipartita DSM 44233]
 gi|258556194|gb|ACV79136.1| deoxyribodipyrimidine photolyase-related protein [Nakamurella
           multipartita DSM 44233]
          Length = 500

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 9/171 (5%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LS  L++G+L P +  +R+++ +        +        L WR++  HL  + 
Sbjct: 254 WMAHSLLSAPLNLGLLDPLEVVHRVEDAYRGGQAPIAAAEAVVRQILGWRDYVWHLYWYL 313

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    +     +          A +        +   +  L   GW+H+  R++  
Sbjct: 314 GPDYPAGNGLRARRGLPDWFAELDADAVQA-----RCLSGVLADLRDHGWVHHIPRLMVL 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
                    D     ++F    +D  +    A+  G  Q+A      + PY
Sbjct: 369 GNFALQQGWDPAELTDWFHRCFVDGYEWVMVANVVGMSQFADGGRITTKPY 419


>gi|254489714|ref|ZP_05102910.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga
           thiooxidans DMS010]
 gi|224465123|gb|EEF81376.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga
           thiooxydans DMS010]
          Length = 517

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 104/351 (29%), Gaps = 19/351 (5%)

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L    +       +     +  L+S+  Q  ++  +   Q+ I      +     
Sbjct: 85  ALEATLKNNNVSRVRCVLAGDMTVVSRLESFFSQYNLSIEWLADQHFITRQGEFQQWLDE 144

Query: 127 LQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +   +   +                     +      R++  +   Q    +       
Sbjct: 145 RKQPRMEHWYRHLRKDRQILMDDNQAPIGGQWNFDKDNRRSFDKKGPQLPSSNSRFKHDA 204

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T  V         + P    D  +P+  + AL  L  F K ++  + + +D    +   
Sbjct: 205 ITKHVIQDVETFCAELPGSLADFNWPVTRKQALQQLDAFIKYRLPSFGDYQDAMWTEQPF 264

Query: 244 QLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
                LS  +      P +  N+ ++ + +      +        L WRE+ R L   Y 
Sbjct: 265 LFHACLSSSLNLKLLNPLEVINKAEQAYYENNAPLNAVEGFIRQVLGWREYIRGLYWSYR 324

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +    +     +           W    T    +  ++ Q+   G+ H+  R++   
Sbjct: 325 EHWLDYNALDHQRALPSFY-------W-HADTDMKCMHHSISQVLEHGYGHHIQRLMVTG 376

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
                  +       +++   +D     ++ +  G  Q+A      S PY 
Sbjct: 377 LFSLLWGIKPDAIHRWYLGMYVDAVAWVEIPNTLGMSQYADGGIVGSKPYI 427


>gi|284031886|ref|YP_003381817.1| deoxyribodipyrimidine photolyase-like protein [Kribbella flavida
           DSM 17836]
 gi|283811179|gb|ADB33018.1| deoxyribodipyrimidine photolyase-related protein [Kribbella flavida
           DSM 17836]
          Length = 492

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 5/148 (3%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LS  L++G+L P +   + ++ +        S        + WR++  HL   +
Sbjct: 245 WMAHSLLSATLNLGLLDPMEAVEQAEDAYRAGAAPLASVEGFVRQLIGWRDYMWHLYWHF 304

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    +   + +              G  G   +   +R +   GW+H+  R++  
Sbjct: 305 GPDYRRSNQLAARQPVPEWFTELD----ADGTVGARCLSEVLRGVREHGWVHHIPRLMVL 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                          ++F    +D  D 
Sbjct: 361 GNYALQRGWCPDEVTDWFHRSFVDGYDW 388


>gi|332653573|ref|ZP_08419318.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16]
 gi|332518719|gb|EGJ48322.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16]
          Length = 384

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/271 (7%), Positives = 32/271 (11%), Gaps = 2/271 (0%)

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
            + +                 +              V     S        +        
Sbjct: 100 NRSYRASGRCWCNRSYRASGCRWCHWSYRTSGCRRCVWPLWSSGYRWCDWSHWTSGRRWC 159

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                      R              P        +                        
Sbjct: 160 NWPHRTSGRRWRDRAHRTSGRRWCNWPHWSSGHCWHCGCNRSYRTSGYRWCDWSHWSSGH 219

Query: 224 KEKVYYYVEQ-RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +   + Y    R        S    + +    S   CW              +    S  
Sbjct: 220 RWCNWSYWSSGRRWCNWSYWSSGYRWCNWSYWSSGCCWCNWPYRTSGCHWYNRPHWSSGC 279

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-KQGYTGFPIIDAAMR 341
               W          Y S        P                W    +       +   
Sbjct: 280 RWHNWSHRSSGYCWCYRSHWSSGHCWPCRCNWPHRSYRACRCDWSCWRHRPRRCYRSHRA 339

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                    +R R    S             
Sbjct: 340 CRCYRSCWCHRPRRCYRSHWPYWPCRQRGRC 370


>gi|318041432|ref|ZP_07973388.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. CB0101]
          Length = 516

 Score = 43.7 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 24/191 (12%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             + LSPYL++G+L P +   RL++  ++  +            L WRE Y H +  +  
Sbjct: 268 WHALLSPYLNLGLLHPLEVIRRLEQAGLEQQVPLAGLEGVIRQILGWRE-YTHGLYHWFG 326

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +                     + G +G   +D    +L   G+ H+  R++  + 
Sbjct: 327 SDYPRLNHFHAAVPLPVWFD------QLGGSGLRCLDTVFTELRRSGYAHHIQRLMVLAN 380

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF----RIFNPTIQGK 416
                 +D +    +F    +D        G  W   T    +  F    R     +  K
Sbjct: 381 YGLIAGLDPQALTAWFHRMFID--------GHDWVMQTNVIGMGLFADGGR-----LASK 427

Query: 417 RFDPQGTFIRH 427
            +   G +I+ 
Sbjct: 428 PYAASGNYIKR 438


>gi|148242302|ref|YP_001227459.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. RCC307]
 gi|147850612|emb|CAK28106.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           RCC307]
          Length = 508

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 85/336 (25%), Gaps = 25/336 (7%)

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+GI              + ++    Q                +   +   +    + 
Sbjct: 84  LKQQGISRLVVMAPPDRPIRQAIERLSQQPEWPCEL-EWIENNQFLWIAEEFSRWAGSKK 142

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTGP 187
             +             +       +          +                P    +  
Sbjct: 143 QLRMEFFYREGRRRFDVLMDGDQPQGGQWNFDQDNRKPPPKGLEGPEPLWFEPDAITSAV 202

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQGT 242
           ++  N            DP      Q     + +            Y             
Sbjct: 203 ISKLNRLAERYELPGTSDPFRWGVSQQQAQEVLEHFIATRLEGFGPYQDAMVSGQPTLWH 262

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + +SPY+++G+L P     +L+    +  I   S        L WREF   L   +    
Sbjct: 263 ALISPYINLGLLQPLAVIRQLEHAGREREIPLASLEGVIRQLLGWREFTHGLYHHFGEDY 322

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +   E +            + G +G   +D  + +LN  G+ H+  R++  + L 
Sbjct: 323 SHSNALEALEPLPEFLH-------QLGGSGMGCVDTVLGELNERGYAHHIQRLMVLTNLG 375

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
                + +    +F +Q +D           W   T
Sbjct: 376 LMAGWNPQDLTSWFQAQFVDAH--------HWVMQT 403


>gi|15789886|ref|NP_279710.1| hypothetical protein VNG0705C [Halobacterium sp. NRC-1]
 gi|169235607|ref|YP_001688807.1| hypothetical protein OE2049R [Halobacterium salinarum R1]
 gi|10580288|gb|AAG19190.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726673|emb|CAP13459.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 503

 Score = 43.7 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 94/336 (27%), Gaps = 21/336 (6%)

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
           G      + +N   + + L      +  +              +                
Sbjct: 86  GDDLVVQRPANHGTA-DRLRELVAARGGSLRVVANAQFRCSPAQFDDWMGTEPPFKHRPF 144

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           +          + +        ++   +       + D  S+         P     +  
Sbjct: 145 YRHMRRETGYLMRDDDTPEGGDWSYDDQNQETPPAEYDSPSVGGFEYDEHVPAVRDWVAT 204

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSI 251
            FD         +P+  + A   L  F  +++  +    D           S LS  ++I
Sbjct: 205 EFDTWGDPDGFDWPVTREQATRALESFVADRLAGFGPYEDAVLADDWHLEHSLLSAAVNI 264

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310
           G+L P +  +   + +      P +    ++ +LI WREF RH+             +  
Sbjct: 265 GLLHPEEVADAALDAYRSRDDIPLNSIEGFVRQLIGWREFMRHVYRHQMPGLATANQLGA 324

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
              +           W    T    + +A  ++   G+ H+  R++  S          +
Sbjct: 325 DRDLPPLY-------WTPTATDMACLGSAAGRVYDRGYAHHIERLMVLSNFALTYGARPQ 377

Query: 371 IGEEYFMSQLLD-GDLA--SNNGGWQWAAST-GNDS 402
              E+F    +D  D     N  G      + G D+
Sbjct: 378 ALTEWFHGGFVDAYDWVVTPNVVG----MGSFGTDA 409


>gi|170078893|ref|YP_001735531.1| hypothetical protein SYNPCC7002_A2298 [Synechococcus sp. PCC 7002]
 gi|169886562|gb|ACB00276.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 511

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 105/382 (27%), Gaps = 36/382 (9%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS 90
             S   V+   I   +  RQ     ++   +++++    + L Q G    Y   ++F  +
Sbjct: 25  QRSTTPVLL--IEAADYARQRPYHGQKLVLVWSAMRHFAQELEQAGWSVHYAIAADFQSA 82

Query: 91  IE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +      +   +  V +          +        K + +     S  +          
Sbjct: 83  LTDWIATAGITELWVMQPSDRPFETFIQTLDLPCSLKFIPNNHFLWSRAEFHNWAKNRKR 142

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                 Y+      K L+    Q               P    N P+   +    +    
Sbjct: 143 LVLEDFYRAGRKRFKILLDEAQQPLGGQWNFDKDNRKPPKKDLNPPQPLTFAPDELTQAV 202

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------------------------GTSQ 244
               +    +     +   +     + +   +                            
Sbjct: 203 INRVKALGLVTYGQLELFRWAVTRTQALQVFEHFLATGLEKFGTFQDAMVTGEYTLWHGL 262

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +SPYL++G+L P +   + +       I   +        L WRE+   L  +  +    
Sbjct: 263 ISPYLNLGLLHPWELIKKAEAIREQKAIALNNLEGFIRQILGWREYLHGLYHYVGADYAQ 322

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K      + +           W    T    +   ++Q+   G+ H+  R++  S     
Sbjct: 323 KNHFNHQQPLPDFY-------WDSRKTDLNCLKQVLQQVEQTGYAHHIQRLMILSNFALI 375

Query: 365 LLVDWRIGEEYFMSQLLD-GDL 385
           L V  +  E +F +  +D  D 
Sbjct: 376 LGVKPQALEAWFHAAFIDAYDW 397


>gi|292655388|ref|YP_003535285.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii
           DS2]
 gi|291372510|gb|ADE04737.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii
           DS2]
          Length = 498

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 98/367 (26%), Gaps = 45/367 (12%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD------------------- 89
            +     ++   ++A++   +  L ++G    Y Q   F +                   
Sbjct: 33  DRLPYHPQKLALVFAAMRHFRDDLRERGYEVTYLQTETFGEGLDRYFDAAPGDDLVVMDP 92

Query: 90  ----SIEWLDSYCL---------QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
               + E L              +  +         +          E   +H       
Sbjct: 93  PSHGAGERLRGLVSARGGSLTLVENDLFLTTPADFDDWAGDADSYRQEHWYRHARRETGV 152

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                 P G   N+  Q  +              + D  +  V  +           P  
Sbjct: 153 LMDGDDPVGGEWNYDDQNRETPPEGWTPPEAPRFEPDETTREVIELVRERYPDAWGSPEP 212

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           F +P         +     + +      +         D       S LS   ++G+L P
Sbjct: 213 FVWPVTREAARQALSHFVEVRLPEFGPYQDAMV-----DGEWALCHSLLSAATNLGLLHP 267

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           R+    ++E +        S        L WREF RH+             +  TE +  
Sbjct: 268 REAVEAVEEAYERGDAPLNSAEGFVRQVLGWREFVRHVYRRSMPELAEANQLDQTEPLP- 326

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                  +A+  G T    +  A+  +   G+ H+  R++  S       VD    + +F
Sbjct: 327 -------EAYWTGETDMNCLSEAVGHVRDRGYAHHIERLMVLSNFALVYGVDPAELDRWF 379

Query: 377 MSQLLDG 383
               +D 
Sbjct: 380 HLGFVDA 386


>gi|16330750|ref|NP_441478.1| hypothetical protein slr1343 [Synechocystis sp. PCC 6803]
 gi|1653243|dbj|BAA18158.1| slr1343 [Synechocystis sp. PCC 6803]
          Length = 504

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 106/387 (27%), Gaps = 38/387 (9%)

Query: 29  ACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
           A  +      +V  + I + E  RQ     ++   +++++    + L  +G    Y   +
Sbjct: 18  ALKSHQGDRSQVPVLLIESAEFARQRPYHRQKLVLVWSAMRHFAEDLRAEGWSVTYEIAA 77

Query: 86  NFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
           +F   +            +V            +          L +     S +D     
Sbjct: 78  DFLTPLHHWLKTQGVSHLQVMAPGDRPFEAWLKSLTLPCELTLLPNNHFLWSREDFSAWA 137

Query: 144 PGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSLPVPAIRLTGPVTPS 191
                      Y+      + L+                +   +    P   L+ P    
Sbjct: 138 GDRKRLLLEDFYRAGRKRWQILMVDDQPVGGRWNFDQDNRKPAKKNLSPPKPLSFPPDDI 197

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----------- 240
                       +     +         +   +   Y+                      
Sbjct: 198 TQQVIERIEQLNLPGYGQLSGFQWGVSRQDALQGLKYFVDVGLSQFGTYQDAMVMGQKTL 257

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYP 299
             S +SPYL++G+L+P +        F    I   +        L WRE+ +        
Sbjct: 258 WHSLISPYLNLGLLTPLEVIEAATNAFATQDISLNNVEGFIRQVLGWREYMQGIYQWVDE 317

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G  F       E+         W+  +T    +   + Q+   G+ H+  R++  S
Sbjct: 318 DYGQGNWFNHDFPLPEFY--------WQSSHTKMNCLATVLNQVEETGYAHHIQRLMVLS 369

Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                + V+ +  +++F +  +D  D 
Sbjct: 370 NFALIVGVNPQKLQDWFHAAFIDAYDW 396


>gi|291245135|ref|XP_002742447.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 1032

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 44/233 (18%), Gaps = 6/233 (2%)

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N  + +     +   +       I + +           L+      +           N
Sbjct: 259 NNCFNMEHQCPEYYFQCDEGRVCIPQWYRCDGDNDCQDTLDETGCTNRSIDVIDFTCHAN 318

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
             +    +  +P + +              Y    +       E                
Sbjct: 319 --EFKCETECIPDVWVCDGFIDCPSAEDEHYCHMTVINGCAEHEFMCDVSQCIPNSWLCD 376

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
             V+  D       + L         +    +       ++  +                
Sbjct: 377 GIVDCFDQTDEIIYNCLGGIGECFYDTSGTDYRGWTNTTINGKVCQNWSEQIPHQHSYTP 436

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             Y +      + C      P      W   +  +  W     G P ++    
Sbjct: 437 NNYSNHGIGTHNYCR----NPSESSATWCYTTDPMVRWDWCDIGEPGVNCNNT 485


>gi|302547631|ref|ZP_07299973.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465249|gb|EFL28342.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 502

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 9/170 (5%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              SQLS  L++G+L P +C +R +  + D  +              WRE+  HL   + 
Sbjct: 257 MCHSQLSAPLNLGLLHPAECVDRAERAWRDGAVPLAGAEGFVRQIAGWREYVWHLYWHFR 316

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G+  +  T  +          A          +   + Q+   GW H+  R++   
Sbjct: 317 EDYRGRNALRHTAPLPGWFLDLDADA-----VTAHCLATVLAQVRDTGWTHHIPRLMVLG 371

Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
                   D     ++F    +D  D     +  G  Q+A      + PY
Sbjct: 372 SRALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGLMTTKPY 421


>gi|193795850|gb|ACF21978.1| CPD1 [Cercospora zeae-maydis]
          Length = 72

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREFY+H++A +P VCM KPF      +EW  D  L + W  G TGFPI+DAAMRQ 
Sbjct: 1   EVAWREFYKHVLAHWPYVCMSKPFKYEYSDVEWEYDDALFEKWTSGLTGFPIVDAAMRQC 60

Query: 344 NTIGWMHNRLRM 355
             + WMHNRLRM
Sbjct: 61  KEMSWMHNRLRM 72


>gi|21218741|ref|NP_624520.1| hypothetical protein SCO0184 [Streptomyces coelicolor A3(2)]
 gi|5748646|emb|CAB53151.1| conserved hypothetical protein SCJ1.33 [Streptomyces coelicolor
           A3(2)]
          Length = 604

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G L P +C  R +  + +      S          WRE+   L  +    
Sbjct: 255 HSLLSSTLNLGPLDPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY---- 310

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ +                            +   + Q+   GW H+  R++     
Sbjct: 311 -FGEGYRRSNALGHTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSH 369

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D      +F    +D  D     N  G  Q+A      + PY
Sbjct: 370 ALQRGWDPAAVTNWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417


>gi|22298242|ref|NP_681489.1| hypothetical protein tlr0700 [Thermosynechococcus elongatus BP-1]
 gi|22294421|dbj|BAC08251.1| tlr0700 [Thermosynechococcus elongatus BP-1]
          Length = 147

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL++G+L P++  +     + +  +   S        L WRE+   L  +  +
Sbjct: 9   WHSLLSPYLNLGLLHPQEVIDAALGAYSEGQLPLNSVEGFIRQILGWREYMYGLYHYLGA 68

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               + F+   + +           W+        +   ++Q+   G+ H+  R++  + 
Sbjct: 69  DYCQQNFLQHHQPLPAFF-------WQSDRATMSCLRHVLKQIECTGYAHHIQRLMILAN 121

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385
                 +  +  E +F S  +D  D 
Sbjct: 122 FALITGLAPQEVENWFHSVFIDAYDW 147


>gi|254442469|ref|ZP_05055945.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256777|gb|EDY81085.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 508

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 113/371 (30%), Gaps = 52/371 (14%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +++ +    G+  +  +  +F  S E   +                        +   
Sbjct: 110 LGELKAACLSAGVPLEVVEDDSFYSSAEDFAA-----------------------HREGR 146

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K+L+     +       +   +        +      RK   +   +     L  P   +
Sbjct: 147 KQLRMEYFYREMRKKHGVLMDADGKPTGGKWNFDASNRKPFGKGGPERLAPRLRFPPDEI 206

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  V          +P +     +P+   +AL  L  F + ++  +   +D         
Sbjct: 207 SREVIQDVDTALTGHPGELSHFDWPVTPSDALRALESFIENELPLFGAYQDAMWSGEPYL 266

Query: 245 ----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
               L+  +++ +L PR+  +     +       +S        L WREF R +   +  
Sbjct: 267 SHSLLASSINLKLLDPREVVDAAVAAYESGHAPIESVEGFVRQILGWREFVRGIYGAFMP 326

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + +  +   E +           W  G T    I   + Q    G+ H+  R++    
Sbjct: 327 EYLERNALGAREPLPSFY-------W-DGETEMNCIREVVTQTMKYGYAHHIQRLMVTGL 378

Query: 361 LVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
                 VD +   E++++  +D     +L +  G  Q+A      S PY           
Sbjct: 379 YALLHGVDPKEVHEWYLAVYVDAVEWVELPNTLGMSQYADGGVMASKPYV---------- 428

Query: 417 RFDPQGTFIRH 427
                G +I+ 
Sbjct: 429 ---ATGKYIKR 436


>gi|262195259|ref|YP_003266468.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
 gi|262078606|gb|ACY14575.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
          Length = 519

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L++G+++P +   R      D  +   S        + WREF R +   +  
Sbjct: 272 FHSVLSPLLNLGLITPDEVVERTLAHAEDHRVPLNSLEGFLRQIIGWREFVRGVYRGHSE 331

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                       +++          W    TG   +D A+ ++  +GW H+  R++    
Sbjct: 332 QQETANAWGHHRRMKPC--------WWDASTGLRPLDDAIAKVLRMGWAHHIERLMVLCN 383

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385
           L+    ++ R   ++F++  +D  D 
Sbjct: 384 LMNLCEIEPRQVHDWFLAMFVDAADW 409


>gi|123968015|ref|YP_001008873.1| hypothetical protein A9601_04781 [Prochlorococcus marinus str.
           AS9601]
 gi|123198125|gb|ABM69766.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. AS9601]
          Length = 496

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P    N+      +  +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F  + +K        + +++ QG TG   +D  ++ +   G+ H+  R++    
Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|113477369|ref|YP_723430.1| deoxyribodipyrimidine photolyase-like protein [Trichodesmium
           erythraeum IMS101]
 gi|110168417|gb|ABG52957.1| deoxyribodipyrimidine photolyase-related protein [Trichodesmium
           erythraeum IMS101]
          Length = 476

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/428 (13%), Positives = 118/428 (27%), Gaps = 58/428 (13%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           V + + E   +      +  +I   L + +  L  KG    Y + +   +  + +     
Sbjct: 26  VLVESKELCNRLNYHKFKLTYILTCLREYRDLLISKGKKVYYFELNQHLNFEDAIKKLVK 85

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           +   TKL +    +    +    +   L+           +               K   
Sbjct: 86  EFSYTKLQFTSISDKPVRKLIGEIIHNLKLESQELQSPSFLTTNLDFQKYLEHSKQKYLM 145

Query: 160 PFRKALIQNLVQA---------------------------------DLRSLPVPAIRLTG 186
                  +  +                                   + +S     +  T 
Sbjct: 146 NSFYIWQRKRLNIFVDQNKPKFGKWSFDSENRKKLPKNVSLPSSIWEFKSNNYQNVAQTI 205

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               +N P + D     +       +Q     L    +    Y     +       S LS
Sbjct: 206 SELYTNNPGYLDLQKSWLPINHKQAKQKLQEFLETRFRLFGNYEDALTNRDNFVFHSVLS 265

Query: 247 PYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           P L+ G+L+P      +    E+  +L     S        + WRE+ + L  F      
Sbjct: 266 PMLNNGLLTPSYVLQEVLNYVEKNNNLEDFYNSIEGFIRQIIGWREWMKLLYEFKYD--- 322

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F          K        K      P+   A+ +++ + W H+  R++  S  + 
Sbjct: 323 -ENFRELNFFKAQEKLPDYFYDLKDLPENIPLT-LAIEKVSKLSWAHHIERLMILSNWMT 380

Query: 364 DLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFD 419
               + +   E+F+SQ +D  +     N  G    A  G  +  PY              
Sbjct: 381 LNSYNPKECYEWFLSQFVDAYEWVMVPNVYGMGLFADGGFFATKPYI------------- 427

Query: 420 PQGTFIRH 427
             G +I+ 
Sbjct: 428 SGGAYIKK 435


>gi|213650723|ref|ZP_03380776.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 158

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 1/149 (0%)

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           IC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G ++  
Sbjct: 9   ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGALSIP 68

Query: 192 NIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             P   +YP QA D   FP+ E   +  LR FC +    Y  +RD PA+ GTS+LS  L+
Sbjct: 69  LTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLSASLA 128

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            G LSPRQC +RL  E    L       +
Sbjct: 129 TGGLSPRQCLHRLLAEQPQALDGGPGSVW 157


>gi|313677215|ref|YP_004055211.1| deoxyribodipyrimidine photolyase-related protein [Marivirga
           tractuosa DSM 4126]
 gi|312943913|gb|ADR23103.1| deoxyribodipyrimidine photolyase-related protein [Marivirga
           tractuosa DSM 4126]
          Length = 511

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 88/298 (29%), Gaps = 14/298 (4%)

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE----KRLQHRVICKSFDDSVLLPPGSI 147
           + L + C +  ++      ++ + E            + L      K   D  +L  G+ 
Sbjct: 111 QQLKNLCEEISISTNSVETEHFLTERDDIADFFKGKKQFLMENFYRKMRKDHDILMEGTE 170

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
                  +      +      +  A      V A+               D         
Sbjct: 171 PVGGKWNFDHDNRNKYKGEVPIPPAYSYKNDVKAVISDIEKAGIKTIGTVDAENFHWPID 230

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
                Q A +  R+       Y             S++S  L+  ++SP++  +++ E +
Sbjct: 231 RKQALQFARYFCRELLPYFGTYQDAMHSEEQFLFHSRISFALNSKLISPKELVDKIIEAW 290

Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            +   K K           + WRE+ R +            F     K+           
Sbjct: 291 EENQDKIKIAQVEGYIRQVIGWREYMRGIYWAKMPGYAEMNFFEHDRKLPDFY------- 343

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           W  G T    ++ +++Q  T  + H+  R++         + D    +++++   +D 
Sbjct: 344 W-TGKTKMKCMEKSIKQSLTEAYAHHIQRLMVTGNFALLNMTDPDEVDQWYLGIYIDA 400


>gi|156744167|ref|YP_001434296.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235495|gb|ABU60278.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 508

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 18/191 (9%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL+IG+L P Q    ++E +       +S        + WRE+          
Sbjct: 266 FHSMLSPYLNIGLLEPLQIVRTVEEAYRAGAAPIQSVEGFARQIIGWREYIYWQYWRLMP 325

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T  +           W  G T    +   + +    G+ H+  R++    
Sbjct: 326 GLRDANAWNATRPLPRFF-------W-SGDTDMRCLRHVIERAIATGYTHHIERLMIVCN 377

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGGWQWAASTGNDS-------VPYFRIFN 410
                 +      ++F++  +D  D     N  G    A  G  +         Y R  +
Sbjct: 378 FCLLAGIRPSEVNDWFLAHYVDAYDWVMQPNVIGMGLNADGGLTATKPYIASAAYIRKMS 437

Query: 411 PTIQGKRFDPQ 421
               G R+DP+
Sbjct: 438 DYCDGCRYDPK 448


>gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
 gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
          Length = 496

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 115/429 (26%), Gaps = 45/429 (10%)

Query: 11  LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+   R   R   N AL  A   S A    + +    +      S R   F+   +  
Sbjct: 29  LYWMIAAR---RTRYNFALERALAWSRALGKPLVVLEALRCDYPWASERLHRFVVDGMSD 85

Query: 68  VQKSLSQKGIVFQYHQCSNFDD---------------SIEWLDSYCLQQRVTKLFYNRQY 112
              + +   + +  +                        +    + L + V     +   
Sbjct: 86  QSAAFADTPVAYYPYLEPRPGAGRGLLAALAAHACVVVTDEFPCFFLPRMVAAAARSLDV 145

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           ++  V  + L       RV   +      L      +                       
Sbjct: 146 QVQAVDGNGLYPLAATERVFTTAASFRRHLQKELPAHLGDMPMAEPLAHAPPRDAAHALP 205

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                  P   L  P     +     +           G + A   L +F +  +  Y+E
Sbjct: 206 AAIRKRWPPASLGRPGASDALLSALRFDRAVEAAPVRGGARAAGETLERFVRAGLPRYLE 265

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-------- 284
            R+ PA   TSQLSPYL  G +S  + + R+         +    A              
Sbjct: 266 ARNQPADPVTSQLSPYLHFGHISAHEVFRRVMARDQWTPDRMAPRATGSREGFWGASSEV 325

Query: 285 -------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYT 331
                  + WRE   ++ A        +    W +                   ++Q  T
Sbjct: 326 EGFLDELITWREIGYNMAAKRDDYDRYESLPAWAQTTLEEHTGDPRPHLYELDEFEQART 385

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASN 388
              + +AA  QL   G +HN +RM+    +++                    LDG   ++
Sbjct: 386 HDALWNAAQTQLVREGRIHNYMRMLWGKKILEWTRTPRDALAVMIELNNRYALDGRNPNS 445

Query: 389 NGGWQWAAS 397
             G  W   
Sbjct: 446 YSGIFWCLG 454


>gi|74196361|dbj|BAE33071.1| unnamed protein product [Mus musculus]
 gi|74212831|dbj|BAE33376.1| unnamed protein product [Mus musculus]
          Length = 1154

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%)

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + +          +  +    Q    +    A+    P              +      
Sbjct: 275 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCG 334

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267
            +  +     +      + +      +    +     +P    G   P RQ  +      
Sbjct: 335 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 390

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326
                       +  +        ++           +       +    +    +   W
Sbjct: 391 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 450

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
               +     +    Q +        L                +   ++F     D    
Sbjct: 451 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 510

Query: 387 SNNGGW 392
           S   GW
Sbjct: 511 SEECGW 516


>gi|152967026|ref|YP_001362810.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus
           radiotolerans SRS30216]
 gi|151361543|gb|ABS04546.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus
           radiotolerans SRS30216]
          Length = 510

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 6/150 (4%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LS   ++G+L P +   R +E      ++  S        + WR +  HL  
Sbjct: 262 DPWMAHSLLSAPQNLGLLDPLEIARRAEEHGRAHGVRLASVEGFVRQVVGWRSYTWHLYW 321

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                   +  +     I          A          +   + Q+   GW H+  R++
Sbjct: 322 HLGEGYKQRNALGSERTIPDWFGDLDADA-----VEANCLRHVLGQVRDEGWTHHIPRLM 376

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                            ++F    +D  D 
Sbjct: 377 VLGNWGLQRGYRPAELADWFWRNFVDGYDW 406


>gi|289774147|ref|ZP_06533525.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289704346|gb|EFD71775.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 503

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 9/155 (5%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P +C  R +  + +      S          WRE+   L  +      G+ +       
Sbjct: 273 DPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY-----FGEGYRRSNALG 327

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                                +   + Q+   GW H+  R++           D     +
Sbjct: 328 HTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTD 387

Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
           +F    +D  D     +  G  Q+A      + PY
Sbjct: 388 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 422


>gi|149927057|ref|ZP_01915315.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105]
 gi|149824278|gb|EDM83498.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105]
          Length = 513

 Score = 42.5 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 107/409 (26%), Gaps = 59/409 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD--DSIEWLDSYCLQQRVTKLFYNRQYEI 114
           +     +++    + L + G    Y    +    +    + + C Q   T +      E 
Sbjct: 50  RVALFLSAMRHFAEELRKAGYTVHYRSLRDTGQNNLTTEVANLCKQHGYTSIDMAEPGEW 109

Query: 115 N---------------------EVRRDKLLEKRLQHRVICKSFDDSVLLPPG-------S 146
                                         E         +   +               
Sbjct: 110 RLEQEFLKFAKSENLKLRLLEDTHYLCSRSEFAKWASGYKQMRMEYFYREMRKRTGVLME 169

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
            +  A   +      R A  +                +T  V       F D+P    + 
Sbjct: 170 GVEPAGGKWNFDADNRSAFPKAGPGDITPPAFFEPDEITQAVFAEVEENFPDHPGTLKNF 229

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL----SPYLSIGVLSPRQCWNR 262
            +P+    AL  L  F + +   +   +D              S  +++ +L P +   +
Sbjct: 230 AWPVTRTQALQALDNFIENRFANFGTYQDAMWTNTPFGWHSLVSSSINLHLLHPLEVIQK 289

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
            +  +    +   S        L WREF R +            ++     +        
Sbjct: 290 AEAAYRAGKVDVASAEGFIRQILGWREFMRGVYWLDMPKMREDNYLQAKLDLPKWF---- 345

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W  G T    +  ++ Q    G+ H+  R++          +  +  E++F++  +D
Sbjct: 346 ---W-TGNTHMNCLKDSIGQTLDYGYAHHIQRLMVIGNFALLAGLVPQQVEDWFLAVYVD 401

Query: 383 G-DLA--SNNGGWQWAASTG-NDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             +     N  G    A+ G   S PY                G +I+ 
Sbjct: 402 AVEWVELPNVAGMALFANGGRFTSKPYI-------------ASGAYIKR 437


>gi|254525656|ref|ZP_05137708.1| photolyase protein family protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537080|gb|EEE39533.1| photolyase protein family protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 496

 Score = 42.5 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P    N+      +  +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F  + +K        + +++ QG TG   +D  ++ +   G+ H+  R++    
Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|260220873|emb|CBA28875.1| hypothetical protein Csp_A09320 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 525

 Score = 42.5 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 89/302 (29%), Gaps = 17/302 (5%)

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
             +      +R  +     Q RV  +   DS   P G   N   +  K +       I  
Sbjct: 153 ETRQMFKPGKRWLMETMYRQMRVRHRVLLDSDGEPEGGQWNFDAENRKAWKGDPVEPIDF 212

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
               D   L                     +P    + +  +    A  +      +   
Sbjct: 213 RPSHDHGLLWKEIQAAEVKTFGLPGANAIRWPLDRDEALHQLEAFIAHALPHFGDYQDAM 272

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
               +R        S LS  L+  +LSPR+   R++  +    +   +        L WR
Sbjct: 273 SREAKR-----LFHSMLSFALNTKMLSPREVVGRVESAWRSGGVPLPAAEGFIRQILGWR 327

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +            F+  +  +           W  G T    + AA+ Q   +  
Sbjct: 328 EYVRGVYWAQMPGYESNNFLEHSADLPEWF-------W-TGKTHMACMSAAITQSLEMAH 379

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP 404
            H+  R++          ++      +++   +D     +L +  G  Q+A   G  + P
Sbjct: 380 AHHIQRLMVIGNFALLAGLNPTALHAWYLGIYIDAFEWVELPNTVGMSQFADGGGLATKP 439

Query: 405 YF 406
           Y 
Sbjct: 440 YV 441


>gi|157412840|ref|YP_001483706.1| hypothetical protein P9215_05041 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387415|gb|ABV50120.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9215]
          Length = 496

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P    N+      +  +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F  + +K        + +++ QG TG   +D  ++ +   G+ H+  R++    
Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|260827350|ref|XP_002608628.1| hypothetical protein BRAFLDRAFT_96165 [Branchiostoma floridae]
 gi|229293979|gb|EEN64638.1| hypothetical protein BRAFLDRAFT_96165 [Branchiostoma floridae]
          Length = 799

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 37/162 (22%), Gaps = 21/162 (12%)

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
              +    R                + F    +  E         A     T   +I+  
Sbjct: 24  CQKDNCTGRCGSWKNTHTCQCDVSCRTFSDCCDDYEDVCRHQESAARTNVTTVERVINTY 83

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE---------YFMSQLLDGDLA---- 386
             Q      +     +   +    D+       +E         +   QL++G+      
Sbjct: 84  SCQWRCNDDVPAHGALCFCNASCLDMANCCEDYQEVCVKRDPDVWTGRQLMEGEPLQCIA 143

Query: 387 --------SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
                    +N  W  A+   +      R+     +    DP
Sbjct: 144 IEPPNMYNIHNYYWMVASCPTSFPRNKVRMLCEEKRSFDEDP 185


>gi|297472778|ref|XP_002686160.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Bos taurus]
 gi|296489487|gb|DAA31600.1| neurogenic locus notch homolog protein 2-like [Bos taurus]
          Length = 2479

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/242 (6%), Positives = 44/242 (18%), Gaps = 6/242 (2%)

Query: 153  QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                      +  +    Q    +    A+    P              +       +  
Sbjct: 1300 CRSTFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1359

Query: 213  QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270
            +     +      + +      +          SP    G   P++   +   +      
Sbjct: 1360 RRGEQCVHTASGPRCFCP----NPQDCDSGCASSPCQHGGSCYPQRQPPYYSCQCAPPFR 1415

Query: 271  LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                +                         +C         +    +    +   W    
Sbjct: 1416 GSHCELYTAPTSTPPATCLSQYCADKARDGICDDVCNSHACQWDGGDCSLTMEDPWANCS 1475

Query: 331  TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
            +  P  +    Q + +      L                +   +++     D    S   
Sbjct: 1476 SPLPCWEYINNQCDELCNTAECLFDNFECQKSSKTCKYDKYCADHYEDNHCDQGCNSEEC 1535

Query: 391  GW 392
            GW
Sbjct: 1536 GW 1537


>gi|256790272|ref|ZP_05528703.1| hypothetical protein SlivT_37818 [Streptomyces lividans TK24]
          Length = 498

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 9/155 (5%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P +C  R +  + +      S          WRE+   L  +      G+ +       
Sbjct: 268 DPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY-----FGEGYRRSNALG 322

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                                +   + Q+   GW H+  R++           D     +
Sbjct: 323 HTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTD 382

Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
           +F    +D  D     +  G  Q+A      + PY
Sbjct: 383 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417


>gi|317969878|ref|ZP_07971268.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. CB0205]
          Length = 507

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 126/437 (28%), Gaps = 53/437 (12%)

Query: 22  DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           D  AL +A    D +V+ +   +     Q     ++   +++++      L  +G    Y
Sbjct: 15  DQSALASA-RPEDCRVLLL--ESSSVLEQRAYHGQKVVLVWSAMRHFAADLRDQGWTVDY 71

Query: 82  HQCSNFDDSI------EWLDSYCLQQRVTKLFYN----------RQYEINEVRRDKLLEK 125
            Q   F  ++      + +    L + V + F                 +        + 
Sbjct: 72  IQTETFSSALLAWIQEQGIQELRLMEPVDRGFRRSIERLSLPIPIHLMQSNAFLWSREDF 131

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                   +   +             ++        +    Q   +   + L  PA    
Sbjct: 132 AAWAGRYKQLRMELFYREGRKRFGVLMETADSPLGGQWNYDQENRKPPTKGLSGPAPLWF 191

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR----------- 234
            P   +          Q    +    +     + R    + + ++ + R           
Sbjct: 192 EPDAVTRAVIEKIEGLQQRHGLPGETQPFRWAVNRDQALQVLDHFTQTRLSGFGPFQDAM 251

Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL++G+L P +   RL+ E ++  +            L WRE+   
Sbjct: 252 VSGEPTLWHALLSPYLNLGLLHPLEVIQRLEREGLERQVPLAGLEGVIRQILGWREYTHG 311

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L  ++            +E +    +       + G +G   +D    ++ + G+ H+  
Sbjct: 312 LYHWFGEQYAEVNHFGASEPLPQWFE-------QLGGSGMRCLDTVFAEIESSGYAHHIQ 364

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLAS--NNGGWQWAASTGNDSVPYFRIFN 410
           R++  +       +D +    +F    +D  D     N  G         D         
Sbjct: 365 RLMLLANYGLLAGLDPQALTAWFHRMFIDGFDWVMLTNVLG----MGVFADGGRLA---- 416

Query: 411 PTIQGKRFDPQGTFIRH 427
                K +   G +I+ 
Sbjct: 417 ----SKPYAASGNYIKR 429


>gi|298713638|emb|CBJ33686.1| n/a [Ectocarpus siliculosus]
          Length = 1023

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/286 (8%), Positives = 51/286 (17%), Gaps = 20/286 (6%)

Query: 103  VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
            V   +Y   Y          +          +S+       P     +A      +    
Sbjct: 720  VCWWYYAGPYVCRWYYAGPYVCWWHYTGPYRRSWWRPWYADPYDDRRNAGPYVCWWYYAG 779

Query: 163  KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRK 221
              + +             A              ++ Y    +   +  G      +    
Sbjct: 780  PYVCRWNYAGPYVCRWNYADPYDDRRNAGPYVCWWYYAGPYVCRWYYAGPYVCRWYYAGP 839

Query: 222  FCKEKVYYYVEQRDI------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            +     Y    +R                  PY+     +                    
Sbjct: 840  YVCWWHYTGPYRRSWWRPWYADPYDDRRDAGPYVCRWYYAGPYVCWWHYTGPYRRSWWRA 899

Query: 276  SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP--WTEKIEWNKDSHLLQAW------K 327
              A  + +      +        P VC      P                +AW       
Sbjct: 900  WYADPYDDRRNAGPYVCWWYYAGPYVCRWNYAGPYVCRWNYAGPYRWSWWRAWYAGPYVC 959

Query: 328  QGYTGFPIIDAA-----MRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            +     P   +      + ++    W+  R         +      
Sbjct: 960  RWNYAGPCWRSGRSRSLVHEVEAYPWLEGRWETTYNLQWMFLAKCK 1005



 Score = 37.1 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/284 (6%), Positives = 49/284 (17%), Gaps = 3/284 (1%)

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
                      R Y     R                              ++     +  
Sbjct: 494 RHCCARNYACARHYPDTHSRHCFARNYACARHYPDTHDRHCFARNYACARHYPDTHDRHC 553

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
                A  ++      R               ++    F   +      +P         
Sbjct: 554 FARNYACARHYPDTHDRHCFARNYACARHYPDTHDRHCFARNYAC-ARHYPDTHDRHCFA 612

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
               C        ++         ++  P         R         +           
Sbjct: 613 RNYACARHYPDTHDRHCFARNYAGARHYPDAYDDHTFARNYAGPYVCRWNYAGPYVCWWY 672

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           ++      W     ++  ++ +    + +        ++   +        Y   P +  
Sbjct: 673 YAGPYVCRWYYAGPYVCWWHYTGPCRRSWWRPWYADPYDDRRNAGPYVCWWYYAGPYVCR 732

Query: 339 AMRQLNTIGWMHNRLRMITASF--LVKDLLVDWRIGEEYFMSQL 380
                  + W H       + +     D   D R    Y     
Sbjct: 733 WYYAGPYVCWWHYTGPYRRSWWRPWYADPYDDRRNAGPYVCWWY 776


>gi|194665363|ref|XP_872335.3| PREDICTED: neurogenic locus notch homolog protein 2-like [Bos taurus]
          Length = 2479

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/242 (6%), Positives = 44/242 (18%), Gaps = 6/242 (2%)

Query: 153  QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                      +  +    Q    +    A+    P              +       +  
Sbjct: 1300 CRSTFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1359

Query: 213  QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270
            +     +      + +      +          SP    G   P++   +   +      
Sbjct: 1360 RRGEQCVHTASGPRCFCP----NPQDCDSGCASSPCQHGGSCYPQRQPPYYSCQCAPPFR 1415

Query: 271  LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                +                         +C         +    +    +   W    
Sbjct: 1416 GSHCELYTAPTSTPPATCLSQYCADKARDGICDDVCNSHACQWDGGDCSLTMEDPWANCS 1475

Query: 331  TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
            +  P  +    Q + +      L                +   +++     D    S   
Sbjct: 1476 SPLPCWEYINNQCDELCNTAECLFDNFECQKSSKTCKYDKYCADHYEDNHCDQGCNSEEC 1535

Query: 391  GW 392
            GW
Sbjct: 1536 GW 1537


>gi|78778808|ref|YP_396920.1| hypothetical protein PMT9312_0423 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712307|gb|ABB49484.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 496

 Score = 42.1 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P +  N+         +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEGFIRQIIGWREFICLVYKKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F          ++  + +++ +G TG   +D  ++ +   G+ H+  R++    
Sbjct: 322 KMRNSNF-------WNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPNQVYKWFMGMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|320008018|gb|ADW02868.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 503

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P +C  R +  +    +   S          WREF  H+  ++ +       +   E +
Sbjct: 276 DPAECVERAEARWRSGDVPLNSAEGFVRQIAGWREFVWHVYWYFGTRYRESNALRHHEPL 335

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                     A     T    +   + Q+ T GW H+  R++    L      D R   +
Sbjct: 336 PAWFTELSSDA-----TDANCLSHVLDQVRTTGWTHHIPRLMVLGSLSLQRGWDPRAVTD 390

Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
           +F    +D  D     +  G  Q+A      + PY
Sbjct: 391 WFHRSFVDGYDWVMVPNVVGMSQYADGGRMTTKPY 425


>gi|194210914|ref|XP_001497254.2| PREDICTED: Notch homolog 2 (Drosophila) [Equus caballus]
          Length = 2469

 Score = 42.1 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 47/242 (19%), Gaps = 6/242 (2%)

Query: 153  QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                      +  I    Q    +    A+    P              +       +  
Sbjct: 1291 CHRAFTGRHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1350

Query: 213  QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270
            +     +      + +      +    + +   +P    G   P++   +   +      
Sbjct: 1351 RRGEQCVHTASGPRCFCP----NPQDCESSCASNPCQHGGSCYPQRQPPYYSCQCSPPFW 1406

Query: 271  LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
              + +                         VC         +    +    +   W    
Sbjct: 1407 GSRCELYTAPTSTPPDTCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1466

Query: 331  TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
            +  P  D    Q + +      L                +   ++F     D    S   
Sbjct: 1467 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1526

Query: 391  GW 392
            GW
Sbjct: 1527 GW 1528


>gi|220913287|ref|YP_002488596.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860165|gb|ACL40507.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter
           chlorophenolicus A6]
          Length = 537

 Score = 42.1 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 16/197 (8%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
                   L+P L+IG+L PR+  + + +        P +    ++ +LI WRE+ R   
Sbjct: 287 HPFINHGLLTPALNIGLLDPREVLDSVLD--GAGQDTPLASLEGFVRQLIGWREYMRATY 344

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                       +    ++           W    TG   +D  + ++   G+ H+  R+
Sbjct: 345 RLRGRQMRSSNLLNHGNRLGTG--------WWDAATGLAPVDMVISRVLATGYSHHIERL 396

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYFRIFNP 411
           +     +  L +      E+FM+  +D  D     N     Q+A+  G  + PY    N 
Sbjct: 397 MILGNAMSLLRIHPHDVYEWFMAMYVDAYDWVMVPNVYAMSQFASGAGITTKPYVSGSNY 456

Query: 412 TIQGKRFDPQGTFIRHW 428
             +     P G +I  W
Sbjct: 457 LRKMSDL-PPGEWIADW 472


>gi|109014712|ref|XP_001114248.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Macaca
            mulatta]
          Length = 2471

 Score = 42.1 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 46/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +      +    +     SP    G   P++   +   +        + +  
Sbjct: 1359 HTASGPRCFCP----NPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFWGSRCELY 1414

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1475 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529


>gi|298208128|ref|YP_003716307.1| deoxyribodipyrimidine photolyase related protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848049|gb|EAP85919.1| deoxyribodipyrimidine photolyase related protein [Croceibacter
           atlanticus HTCC2559]
          Length = 511

 Score = 42.1 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 95/339 (28%), Gaps = 20/339 (5%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L Q+      + + +        D  ++        Q   K   +     NE++  
Sbjct: 82  LTENLQQLINKEEFENLEYLLPDEYRLDKQLKTFCESLSIQWAVKDTEHFYTTRNELQSF 141

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +K++      +       +      N     +      RKA   +      ++    
Sbjct: 142 YKGKKQIVMEYFYRDMRKKHSILMQDSKNPEGGSWNFDKKNRKAWKGSPAIPKAKTFSKD 201

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           A  L   +   NI  F     ++ +         +   +           Y         
Sbjct: 202 ASALINLLDSFNIDYFGAIDSKSFNWPTNRQESLKVLEYFCENLLIHFGDYQDAMHPNEF 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMA 296
               S+LS  L+  +LSP++  N + + + +   +             L WREF R +  
Sbjct: 262 YLFHSRLSFALNTKMLSPKEVINTVLDYYYEHKEQIDISQVEGFVRQILGWREFMRGMYW 321

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                   K  +  T  +           W  G T    +  +++Q     + H+  R++
Sbjct: 322 KEMPGYENKNSLENTNALPEFY-------W-TGNTKMSCLKHSIKQSLDHAYAHHIQRLM 373

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
                           + +++   +D          QW 
Sbjct: 374 ITGNYALLTQTHPDDVDNWYLGVYIDA--------IQWV 404


>gi|297539300|ref|YP_003675069.1| deoxyribodipyrimidine photolyase-like protein [Methylotenera sp.
           301]
 gi|297258647|gb|ADI30492.1| deoxyribodipyrimidine photolyase-related protein [Methylotenera sp.
           301]
          Length = 519

 Score = 42.1 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 113/368 (30%), Gaps = 47/368 (12%)

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           D I        +  V    +    + + +   K+ ++        K      LL  G   
Sbjct: 115 DLIALCKEMNAELVVRDDTHFMCSKADFIHWAKVNKQLRMEFFYRKMRQKYDLLMQGDEP 174

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                 +      RK   ++  Q    +  V    LT  V  +    F ++P    + ++
Sbjct: 175 V--GGAWNYDAENRKTFGKSGPQNVPAAPQVSIDGLTQTVIDTVETYFPNHPGSLKNFIW 232

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL---------SIGVLSPRQC 259
           P+    AL  L  F K K+  + + +D       S  SPYL         ++ +L+PR+ 
Sbjct: 233 PVTRAAALQFLEDFIKNKLAGFGDHQDAMWQSANSSQSPYLWHSLLSTSLNLKLLNPREV 292

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318
                  +    +   S        L WREF R +     P +     +        W  
Sbjct: 293 IAAAVAAYHQQQLPLASVEGFIRQILGWREFIRGVYWLDMPKMGEANHYKHTCTLPSWYW 352

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                     G T    +   +      G+ H+  R++          ++ R  E ++++
Sbjct: 353 ---------TGDTHMNCMKQTINDTMQHGYAHHIQRLMVTGMFGILAELNPREVEAWYLA 403

Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH------- 427
             +D     +L +  G   +A      S PY                G +I+        
Sbjct: 404 VYVDAVEWVELPNVAGMALYANGGRFTSKPYI-------------ASGAYIKRMSNYCSH 450

Query: 428 --WLPELN 433
             + PEL 
Sbjct: 451 CKYKPELK 458


>gi|297663883|ref|XP_002810392.1| PREDICTED: LOW QUALITY PROTEIN: neurogenic locus notch homolog
            protein 2-like, partial [Pongo abelii]
          Length = 2183

 Score = 42.1 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  I    Q    +    A+    P              +       +  +     +
Sbjct: 1011 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1070

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1071 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1126

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1127 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1186

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1187 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1241


>gi|126695785|ref|YP_001090671.1| hypothetical protein P9301_04471 [Prochlorococcus marinus str. MIT
           9301]
 gi|126542828|gb|ABO17070.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 496

 Score = 42.1 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP L+ G+L+P    N+      +  +   S        + WREF   +   Y +
Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F  + EK        + +++ QG TG   +D  ++ +   G+ H+  R++    
Sbjct: 322 KMRNSNFWNFEEKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +    +      ++FM   +D  D     N  G  Q++      + PY 
Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424


>gi|330814352|ref|YP_004358591.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487447|gb|AEA81852.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 469

 Score = 42.1 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP +++G+++P        +      I   S        + WREF R +   Y  
Sbjct: 235 FHSMLSPIINLGLITPATLIRETLDFAKANKIPLNSLEGYVRQIIGWREFMRGIYQNYEK 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             +   F              L ++W  G TG   +D A++     G+ H+  R++    
Sbjct: 295 RLLNTNFFNHQR--------KLSKSWYDGTTGIVPLDHAIKNCLQFGYTHHIERLMVVCN 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGG 391
           L+    +      ++FM   +D  D   A N  G
Sbjct: 347 LMNLSGIQPVQVYKWFMEMYVDSSDWVMAPNVMG 380


>gi|148654197|ref|YP_001274402.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
 gi|148566307|gb|ABQ88452.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus sp.
           RS-1]
          Length = 508

 Score = 41.7 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 104/396 (26%), Gaps = 44/396 (11%)

Query: 23  NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + A+ AA   +    +  V + +  +  Q     ++   I +++     +L ++G +   
Sbjct: 19  HPAIEAAESRSGRRNIRIVLVESDARIAQLPYQRKKIVLILSAMRHYAAALRERGYLVDE 78

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
            +  +F    E L  +  Q R  +L      E    R        L    +    +   L
Sbjct: 79  VRAPSF---AEGLQHHVAQHRSQRLVTMAAAEYETRRFQHETLHALLGIPVDVLPNTQFL 135

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLV---------------------QADLRSLPVP 180
           +             +V        ++                        +  L     P
Sbjct: 136 VGQYDPFPAIEPSQRVIMERFYRAMRRRFAVLIEPDGSPTGGEWNFDRQNRRPLPRTVAP 195

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---------LRKFCKEKVYYYV 231
              +T            D   +        G   A+                      Y 
Sbjct: 196 PPPITFEPDAITRQVMTDVDARGSGVGTATGFALAVTHAQAEAALNDFITNRLAAFGPYE 255

Query: 232 EQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +           S LSPY++IG+L P Q     +E +       +S        + WRE+
Sbjct: 256 DAMSATHDVVFHSMLSPYVNIGLLEPLQMVRAAEEAYRTGAAPIQSVEGFVRQVIGWREY 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                                  +           W  G T    +   +++    G+ H
Sbjct: 316 IYWQYWRLMPALRDANAWNAMRPLPRFF-------W-NGETDMRCLRHVIKRAIATGYTH 367

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
           +  R++          +      ++F++  +D  D 
Sbjct: 368 HIERLMVVCNFCLLAGIRPSEVNDWFLAHYIDAYDW 403


>gi|73981154|ref|XP_858190.1| PREDICTED: similar to notch 2 preproprotein isoform 2 [Canis
            familiaris]
          Length = 2381

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  I    Q    +    A+    P              +       +  +     +
Sbjct: 1209 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGAKCQSSCGQVKCRRGEQCV 1268

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +      +    +     SP    G   P++   +   +          +  
Sbjct: 1269 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1324

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1325 MAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1384

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1385 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1439


>gi|238918286|ref|YP_002931800.1| hypothetical protein NT01EI_0323 [Edwardsiella ictaluri 93-146]
 gi|238867854|gb|ACR67565.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 383

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/254 (5%), Positives = 40/254 (15%)

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                +  L   +  H                          +     +    Q  ++  
Sbjct: 99  QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 158

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                   ++           +                      +    C     +    
Sbjct: 159 QCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 218

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +     Q       +     L   QCW+  +          +    +       +     
Sbjct: 219 QCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNA 278

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                             + ++  +     Q  K              Q           
Sbjct: 279 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNA 338

Query: 354 RMITASFLVKDLLV 367
           +       +K++L 
Sbjct: 339 QCWHCQQRLKNVLC 352



 Score = 40.6 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/265 (6%), Positives = 42/265 (15%), Gaps = 8/265 (3%)

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                +  L   +  H                          +     +    Q  ++  
Sbjct: 75  QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 134

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                   ++           +                      +    C     +    
Sbjct: 135 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNA 194

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNEL 285
           +     Q       +     L   QCW   +                        WL   
Sbjct: 195 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNA 254

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 + L       C  +         +    +      +Q            R  N 
Sbjct: 255 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNA 314

Query: 346 IGWMHNRLRMITASFLVKDLLVDWR 370
             W   +       +  +  L + +
Sbjct: 315 QCWHCQQRLKNAQCWHCQQWLKNAQ 339



 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/282 (5%), Positives = 46/282 (16%), Gaps = 12/282 (4%)

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                +  L   +  H                          +     +    Q  ++  
Sbjct: 27  QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQRWHCQQRLKNAQCWHCQQWLKNA 86

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                   ++           +                      +    C     +    
Sbjct: 87  QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 146

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +     Q       +     L   QCW+  +          +            + ++  
Sbjct: 147 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLK------NAQCWHCQ 200

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                      + ++   +     +     Q W              +  +   W+ N  
Sbjct: 201 QWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCW-----HCQQWLKNAQCWHCQQWLKN-A 254

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +       +K+                       N   W   
Sbjct: 255 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQ 296



 Score = 38.7 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/314 (5%), Positives = 45/314 (14%), Gaps = 16/314 (5%)

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------------DSVL 141
           C Q       ++ Q  +   +     +     +                           
Sbjct: 19  CQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQRWHCQQRLKNAQCWH 78

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                         +     +    Q  ++          ++           +      
Sbjct: 79  CQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWH 138

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
                           +    C          +     Q       +     L   QCW+
Sbjct: 139 CQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNAQCWH 198

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
             +          +    +       +                       + ++  +  H
Sbjct: 199 CQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWH 258

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             Q  K              Q           +       +K+                 
Sbjct: 259 CQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWH 318

Query: 382 DGDLASNNGGWQWA 395
                 N   W   
Sbjct: 319 CQQRLKNAQCWHCQ 332


>gi|73981152|ref|XP_540266.2| PREDICTED: similar to notch 2 preproprotein isoform 1 [Canis
            familiaris]
          Length = 2471

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  I    Q    +    A+    P              +       +  +     +
Sbjct: 1299 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGAKCQSSCGQVKCRRGEQCV 1358

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +      +    +     SP    G   P++   +   +          +  
Sbjct: 1359 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1414

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1415 MAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1475 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529


>gi|134288853|ref|NP_035058.2| neurogenic locus notch homolog protein 2 [Mus musculus]
 gi|148707003|gb|EDL38950.1| Notch gene homolog 2 (Drosophila), isoform CRA_a [Mus musculus]
 gi|225000670|gb|AAI72642.1| Notch gene homolog 2 (Drosophila) [synthetic construct]
          Length = 2473

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%)

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
             + +          +  +    Q    +    A+    P              +      
Sbjct: 1288 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCG 1347

Query: 209  PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267
             +  +     +      + +      +    +     +P    G   P RQ  +      
Sbjct: 1348 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 1403

Query: 268  VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326
                        +  +        ++           +       +    +    +   W
Sbjct: 1404 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463

Query: 327  KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
                +     +    Q +        L                +   ++F     D    
Sbjct: 1464 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 1523

Query: 387  SNNGGW 392
            S   GW
Sbjct: 1524 SEECGW 1529


>gi|110668351|ref|YP_658162.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum
           walsbyi DSM 16790]
 gi|109626098|emb|CAJ52549.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum
           walsbyi DSM 16790]
          Length = 522

 Score = 41.7 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/373 (10%), Positives = 90/373 (24%), Gaps = 45/373 (12%)

Query: 47  QWRQHGISARQ------SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW------- 93
               H  + R+         +++ +   +  L   G    Y +   F D++         
Sbjct: 46  LIEAHDFARRKSYHHDKLAIMFSGMRHFRDELEDAGYDVVYLKAPTFSDALAEYFERYPD 105

Query: 94  ----------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                            D               +  +                       
Sbjct: 106 DELIQMRSPSYNSAMRFDELVEDVGGQYRSVENELFVGTTTAFDEWANNSDTDPFRHETF 165

Query: 138 DSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
              +     +L +        +    +         +   +  P        T S +   
Sbjct: 166 YRWMRGKSGVLMNDGDPVGGEWNYDDENRDFPPDDWESPPVYDPEHDELTTETMSWVEST 225

Query: 197 FDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
           FD        ++P+  + A     H + +       Y    R        + L   +++G
Sbjct: 226 FDTWGDTDSLIWPVTREQALEKLHHFISERIPSFGPYQDAMRREDWAMSHALLGSSINLG 285

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVC-MGKPFIPW 310
           +L P +    ++  + +    P +     +   L WREF RH+                 
Sbjct: 286 LLHPVEVIQEIETAYHNRDDIPLNSVEGVIRQMLGWREFMRHVYRHTMPELGSANQLDAQ 345

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            +            A          +   +  +   G+ H+  R++  +        D  
Sbjct: 346 HDLPSAYWSGETNMA---------CLGETVDDVKQRGYSHHIQRLMVLANFATLWGADPS 396

Query: 371 IGEEYFMSQLLDG 383
              E+F +  +D 
Sbjct: 397 ELNEWFNATYVDA 409


>gi|257897710|ref|ZP_05677363.1| von Willebrand factor type A domain-containing protein
           [Enterococcus faecium Com15]
 gi|257835622|gb|EEV60696.1| von Willebrand factor type A domain-containing protein
           [Enterococcus faecium Com15]
          Length = 1104

 Score = 41.7 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391
           +P   A   Q     +  N    +  ++   +       G  Y    L+D  D A     
Sbjct: 252 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYAIGGAN 311

Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435
           W+   +AA  G+ +       N   Q  +             D  G +I+ W+ P L+N 
Sbjct: 312 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 369

Query: 436 PTQYIH 441
           PT  +H
Sbjct: 370 PTSDLH 375


>gi|285026357|dbj|BAI67897.1| liver stage-specific antigen-1 [Plasmodium vivax]
          Length = 2149

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/295 (7%), Positives = 60/295 (20%), Gaps = 27/295 (9%)

Query: 64   SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +L   ++ L +K               ++                         R DK  
Sbjct: 1872 NLADYKEWLGKKEYPLI-------KKIVDIWSKIVN--------CRVMIWYKYFRGDKEE 1916

Query: 124  EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +    +        D              +  K +    +   + +     + +      
Sbjct: 1917 QGMPINPEWQNWMQDLKNEWSRYNAYIHKERNKWFQKKEEEFHKFIEDFQFKWMHYNKEL 1976

Query: 184  LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            L                 + I  +   G             +   +  + +    +    
Sbjct: 1977 LEDHSFDVYKKSLKWQDSKWIKWIEKDG-------ESIMMMDMEKWIDKVKSEYDLWLLK 2029

Query: 244  QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
                + +  ++        L E+  D         +S     + +E              
Sbjct: 2030 DWEQWKTNKIMD-----WLLSEKKCDQYQYWLKWEYSNEKTSLRKERIDWYKWKKIRQSE 2084

Query: 304  GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             K +  W  + +          W         I  +M       W+  +   + A
Sbjct: 2085 AKEWQKWVREKDQALLEVKNAIWLNWKEDKKNIFFSMLHHFINNWIAKKQWNVWA 2139


>gi|227553400|ref|ZP_03983449.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177451|gb|EEI58423.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 178

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 1/163 (0%)

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTP 160
               +++N        +RD+   +  +   I         L     I  +    Y+V+TP
Sbjct: 7   DWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTP 66

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
           +     +   +  +          +  + P     + +   +     + +GE+ A   L 
Sbjct: 67  YYNKWKEAPKETPIPVSYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLN 126

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
            F  +K+  Y  +RD P    TS LS +L  G LS R  W  L
Sbjct: 127 TFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQEL 169


>gi|294495341|ref|YP_003541834.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus
           mahii DSM 5219]
 gi|292666340|gb|ADE36189.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus
           mahii DSM 5219]
          Length = 450

 Score = 41.7 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 20/315 (6%)

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L +            F D+ +++ S            N   E       K  E  L+   
Sbjct: 49  LKEYLGKLNIDCKIVFVDNKQFIWSIPEFNTWASSRKNLIMEDFYRTGRKNSEILLEKDG 108

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                  ++      +                   +   Q    S       +   V  S
Sbjct: 109 KPSGGKWNLDRENRKLPPKNGF------------QKKPPQHIKFSPDKITKEIIAEVERS 156

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             P +       +       ++     + +       Y         +   S LSPYL++
Sbjct: 157 EYPTYGKGKDFNLAVTHEDAQKALDFFIEEKLSNFGPYQDIMLTGDNVLWHSILSPYLNL 216

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G+L P     + +  +    +   S        L WRE+   +  +     +   +    
Sbjct: 217 GLLHPLNVIKKAELAYYQKNLPLNSIEGFIRQILGWREYMHCIYKYTGDKYLKSNWFDHE 276

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            ++           W    T    + + + ++   G+ H+  R++  S       V+   
Sbjct: 277 RELPDIY-------WYPERTSMNCMASVIEEVLNTGYAHHIQRLMILSNFALLAEVNPAK 329

Query: 372 GEEYFMSQLLD-GDL 385
            + +F +  +D  D 
Sbjct: 330 VKNWFHAAFIDAYDW 344


>gi|182435389|ref|YP_001823108.1| hypothetical protein SGR_1596 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463905|dbj|BAG18425.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 505

 Score = 41.7 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C  R ++ +        S          WRE+   L   +   
Sbjct: 262 HSLLSVPLNLGLLDPAECVERAEQAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 321

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +     +          A          + A + Q+   GW H+  R++     
Sbjct: 322 YRTRNALRHRAPLPGWFLDLDADA-----VTANCLSAVLAQVRDTGWTHHIPRLMVLGSR 376

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 377 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 424


>gi|89890452|ref|ZP_01201962.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium BBFL7]
 gi|89517367|gb|EAS20024.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium BBFL7]
          Length = 513

 Score = 41.7 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/351 (9%), Positives = 93/351 (26%), Gaps = 14/351 (3%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  + + + ++ I    +   +     + L  +C    +    Y+ ++   + +  +   
Sbjct: 83  VENLNQIIKEQKIEKFEYLAPDEYRLDQQLKEFCKSLNIEWQGYDTEHFFTKRKDVEKFF 142

Query: 125 KRLQHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +  +   +   + D            L      +      R            R      
Sbjct: 143 EGKKRMTMEYFYRDMRKKHQILIDDDLEPEGGKWNYDHSNRNQWKGETDIPHERGFRKDV 202

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +   +  +++           +       G     +       E   Y          
Sbjct: 203 TSIVKLLHKADVKTMGRIDEHNFNWPTTRQDGLDVLNYFCENLLIEFGTYQDAMHTDQHY 262

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S+LS  ++  +LSPR+  + +   F +        +       I +           
Sbjct: 263 LYHSRLSFAMNCKLLSPREVIDAVLVRFRESGKPTIDISQVE--GFIRQILGWREFMRGI 320

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  +    +    N+          G T    +  A+       + H+  R++   
Sbjct: 321 YWKEMPDYQSQNQLANRNQLPEFYW---TGKTKMNCLSNAINNSLDNAYAHHIQRLMVTG 377

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
                 + +    +E+++   +D     ++ +  G  QWA      + PY 
Sbjct: 378 NYALLTMTEPSYVDEWYLGIYIDAIEWVEITNTRGMSQWADGGIVATKPYV 428


>gi|332237858|ref|XP_003268123.1| PREDICTED: neurogenic locus notch homolog protein 2 [Nomascus
            leucogenys]
          Length = 2431

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1259 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCKKGEQCV 1318

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1319 HTASGPRCFCP----SPQDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1374

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1375 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1434

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1435 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1489


>gi|299067789|emb|CBJ38999.1| conserved protein of unknown function [Ralstonia solanacearum
          CMR15]
          Length = 92

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           R DLR  D+ AL+ A  +   +V   F+   E+     +
Sbjct: 26 FRRDLRHIDHAALHYALRHC-REVRCAFLFERERLDPLPV 64


>gi|108799890|ref|YP_640087.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           MCS]
 gi|119869000|ref|YP_938952.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           KMS]
 gi|108770309|gb|ABG09031.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           MCS]
 gi|119695089|gb|ABL92162.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           KMS]
          Length = 525

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 10/319 (3%)

Query: 70  KSLSQKGIVFQYHQCSNF--DDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +L + G     H+ ++F  +  +  L           T  F   + +  +   ++   +
Sbjct: 107 DALERYGRPVLVHEPTSFAAERFVHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFR 166

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                   +   D ++     + N      +      K      V A  +          
Sbjct: 167 MEDFYRDQRRRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEV 226

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQ 244
                             +  + P   + AL    +        Y +         + S 
Sbjct: 227 RRDLDRMDLDTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSL 286

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L++GVL P       ++ + D      +        L WRE+  HL         G
Sbjct: 287 LSVPLNLGVLHPLDAVYAAEQAYRDGTAPLAAVEGFIRQILGWREYMWHLYWH-----FG 341

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + ++   E                       +  A+  L   GW H+  R++        
Sbjct: 342 ERYVDSNELDARTPLPDWWADLDADAVTAECLRHALMGLRDRGWTHHIQRLMILGSHALQ 401

Query: 365 LLVDWRIGEEYFMSQLLDG 383
                R   E++ +  +DG
Sbjct: 402 RGYHPRELTEWYATAYVDG 420


>gi|126435518|ref|YP_001071209.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           JLS]
 gi|126235318|gb|ABN98718.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           JLS]
          Length = 496

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 10/319 (3%)

Query: 70  KSLSQKGIVFQYHQCSNF--DDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +L + G     H+ ++F  +  +  L           T  F   + +  +   ++   +
Sbjct: 78  DALERYGRPVLVHEPTSFAAERFVHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFR 137

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                   +   D ++     + N      +      K      V A  +          
Sbjct: 138 MEDFYRDQRRRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEV 197

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQ 244
                             +  + P   + AL    +        Y +         + S 
Sbjct: 198 RRDLDRMDLDTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSL 257

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L++GVL P       ++ + D      +        L WRE+  HL         G
Sbjct: 258 LSVPLNLGVLHPLDAVYAAEQAYRDGTAPLAAVEGFIRQILGWREYMWHLYWH-----FG 312

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + ++   E                       +  A+  L   GW H+  R++        
Sbjct: 313 ERYVDSNELDARTPLPDWWADLDADAVTAECLRHALMGLRDRGWTHHIQRLMILGSHALQ 372

Query: 365 LLVDWRIGEEYFMSQLLDG 383
                R   E++ +  +DG
Sbjct: 373 RGYHPRELTEWYATAYVDG 391


>gi|119094175|gb|ABL60997.1| hypothetical protein ALOHA_HF1025F10.09 [uncultured marine
           bacterium HF10_25F10]
          Length = 149

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 23/100 (23%)

Query: 11  LVWLRND-LRITDNKALYA----ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           LVWL    LR+T +    A    A          +FI   ++     +  ++  FIY +L
Sbjct: 4   LVWLHEGALRLT-HPVFVAGGPDAAT--------IFIWDRDRLAASHVGIKRQLFIYETL 54

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
            ++ ++     I        +   + E L     Q    +
Sbjct: 55  AEMSQA-RSLDI--------HEGRAEEVLPRLAAQAGACR 85


>gi|300778231|ref|ZP_07088089.1| photolyase [Chryseobacterium gleum ATCC 35910]
 gi|300503741|gb|EFK34881.1| photolyase [Chryseobacterium gleum ATCC 35910]
          Length = 492

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 109/376 (28%), Gaps = 45/376 (11%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           H++   L + + +L         +   +  D                 ++  +   ++  
Sbjct: 105 HWLEKRLKETKLNLEMPNSPLFINTQEDLKD-----------------YFEGKNLYHQTD 147

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             K         +                     +  K          +   +A   +  
Sbjct: 148 FYKQQRITRNILMKGGKPLGGKWTYDTENRKKYPKNKKAPFIHFPKNNEYYQEAKAYTEK 207

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +            P  F    Q ++    +             +++ + +        
Sbjct: 208 YFSTNYGTLTDEQLYPTTFKEAEQWLEQFLEMRFPEFGIYEDSIVEKEYFLHH------- 260

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSP +++G+L+      +      +  I   S        L WREF R +  + 
Sbjct: 261 ----SVLSPMMNVGLLTAEHVLEKAISFARENDIPVNSVEGFVRQILGWREFVRGVYLYQ 316

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 K +        W     L +++    TG   +D++++++   G+ H+  R++  
Sbjct: 317 GVYQRNKNY--------WQHKQKLPESFYTAQTGIRPVDSSIQKILKTGYAHHIERLMIF 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGGWQWAASTGNDS-----VPYFRIFNPT 412
           + L+    +D     ++FM   +D  D         +  S+ +D       PY    +  
Sbjct: 369 ANLMNLCQIDPDEIYQWFMEMFIDAYDWVM-VPNV-YGMSSFSDGGKMSTKPYISGSHYI 426

Query: 413 IQGKRFDPQGTFIRHW 428
            +   + P G +   W
Sbjct: 427 KKMSDY-PDGEWAGQW 441


>gi|301786048|ref|XP_002928445.1| PREDICTED: neurogenic locus notch homolog protein 2-like, partial
            [Ailuropoda melanoleuca]
          Length = 2446

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 45/242 (18%), Gaps = 6/242 (2%)

Query: 153  QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                      +  +    Q    +    A+    P              +       +  
Sbjct: 1267 CRNAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1326

Query: 213  QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270
            +     +      + +      +    +     SP    G   P++   +   +      
Sbjct: 1327 RRGEQCVHTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFW 1382

Query: 271  LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                +                         VC         +    +    +   W    
Sbjct: 1383 GSHCELYMAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1442

Query: 331  TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
            +  P  D    Q + +      L                +   ++F     D    S   
Sbjct: 1443 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1502

Query: 391  GW 392
            GW
Sbjct: 1503 GW 1504


>gi|281341101|gb|EFB16685.1| hypothetical protein PANDA_018377 [Ailuropoda melanoleuca]
          Length = 2447

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 45/242 (18%), Gaps = 6/242 (2%)

Query: 153  QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                      +  +    Q    +    A+    P              +       +  
Sbjct: 1268 CRNAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1327

Query: 213  QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270
            +     +      + +      +    +     SP    G   P++   +   +      
Sbjct: 1328 RRGEQCVHTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFW 1383

Query: 271  LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                +                         VC         +    +    +   W    
Sbjct: 1384 GSHCELYMAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1443

Query: 331  TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
            +  P  D    Q + +      L                +   ++F     D    S   
Sbjct: 1444 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1503

Query: 391  GW 392
            GW
Sbjct: 1504 GW 1505


>gi|323137270|ref|ZP_08072349.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp.
           ATCC 49242]
 gi|322397628|gb|EFY00151.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp.
           ATCC 49242]
          Length = 526

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 95/360 (26%), Gaps = 41/360 (11%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +  FI A++    + L  +G+V  Y +  +     D    L     + +  ++      E
Sbjct: 48  KIAFILAAMRHFAQELRAEGLVVDYVRLDDPENRGDFTGELARAVARHKPDRIVVTEPGE 107

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-------HALQMYKVYTPFRKALI 166
                        L   V  +  D                        Y+        L+
Sbjct: 108 WRVREMMLGWAAMLGLPVEIRDDDRFFCSRADFSRWAGRRETLRMEFFYRDMRRRTGLLM 167

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF---------------QAIDPMFPIG 211
           +       R    P  R   P       R    P                +    + P G
Sbjct: 168 EGDAPVGGRWNFDPENRKPLPAKFRAPQRPRFAPDDTTREILKLTATRYAEHFGDLEPFG 227

Query: 212 EQNALHILRKFCKEKVYYY--------VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
                   R    + +              +        + LSPYL++G+L+PR+     
Sbjct: 228 WAVTRADARIALDDFIANCLPFFGDFQDAMKSGEPFLYHAILSPYLNVGLLTPREICVAA 287

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           +  ++       +        L WRE+ R +             +  T  + W       
Sbjct: 288 ERAYLSGAAPINAVEGFIRQILGWREYVRGIYWLRMPEYAETNALDATRPLPWFF----- 342

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             W  G T    +   + +     + H+  R++          V  R  EE+++    D 
Sbjct: 343 --W-SGETSMNCLGQVIDETRRHAYAHHIQRLMVVGNFALLAGVAPREIEEWYLVVYADA 399


>gi|326776029|ref|ZP_08235294.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656362|gb|EGE41208.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 505

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C  R ++ +        S          WRE+   L   +   
Sbjct: 262 HSLLSVPLNLGLLDPAECVERAEQAWRSGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 321

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +     +          A          + A + Q+   GW H+  R++     
Sbjct: 322 YRTRNALRHRAPLPGWFLDLDADA-----VTANCLSAVLAQVRDTGWTHHIPRLMVLGSR 376

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 377 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 424


>gi|291398125|ref|XP_002715436.1| PREDICTED: notch 2 [Oryctolagus cuniculus]
          Length = 2478

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1305 RHCETFVDVCPQMPCMNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRRGEQCV 1364

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +      +          SP    G   P++   +              +  
Sbjct: 1365 HTASGPRCFCP----NPQDCDAGCASSPCQHGGSCYPQRQPPYYSCHCAPPFWGSHCELY 1420

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
            +    +                 VC         +    +    +   W    +  P  D
Sbjct: 1421 SAPTSSPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMEDPWANCSSPLPCWD 1480

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1481 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1535


>gi|332809966|ref|XP_513697.3| PREDICTED: neurogenic locus notch homolog protein 2, partial [Pan
            troglodytes]
          Length = 2238

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1066 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1125

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1126 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1181

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1182 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1241

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1242 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1296


>gi|24041035|ref|NP_077719.2| neurogenic locus notch homolog protein 2 isoform 1 preproprotein
            [Homo sapiens]
 gi|143811429|sp|Q04721|NOTC2_HUMAN RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch
            2; Short=hN2; Contains: RecName: Full=Notch 2
            extracellular truncation; Contains: RecName: Full=Notch 2
            intracellular domain; Flags: Precursor
 gi|55665317|emb|CAH72483.1| Notch homolog 2 (Drosophila) [Homo sapiens]
 gi|55665845|emb|CAH70182.1| Notch homolog 2 (Drosophila) [Homo sapiens]
 gi|56205498|emb|CAI18974.1| Notch homolog 2 (Drosophila) [Homo sapiens]
          Length = 2471

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1359 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1414

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1475 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529


>gi|11527997|gb|AAG37073.1|AF315356_1 NOTCH2 protein [Homo sapiens]
          Length = 2471

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1359 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1414

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1475 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529


>gi|119577123|gb|EAW56719.1| Notch homolog 2 (Drosophila), isoform CRA_b [Homo sapiens]
          Length = 2220

 Score = 41.4 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1048 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1107

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +           +     SP    G   P++   +   +        + +  
Sbjct: 1108 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1163

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1164 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1223

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1224 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1278


>gi|296123988|ref|YP_003631766.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016328|gb|ADG69567.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           limnophilus DSM 3776]
          Length = 532

 Score = 41.4 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 134/428 (31%), Gaps = 59/428 (13%)

Query: 44  TPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN--------------FDD 89
           TPE+  Q      +  F ++++   +  L  K     Y + +                 D
Sbjct: 48  TPEEVEQIWCHRLRITFFFSAMRHFRDELRAKKFRVHYREMNQDPAKDEGQTFTDLLLRD 107

Query: 90  SIEW------------------LDSYCLQQRVTKLF---YNRQYEINEVRRDKLLEKRLQ 128
           + E                   L++   +  V   +    +      + ++    +K+L 
Sbjct: 108 AHEVGIRELVVVEPGDWRVKQRLEAAAQKLGVPLTYLDDTHFFATHMDFQKFASGKKKLI 167

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                +       +            +      R++   +        L   A  +T  V
Sbjct: 168 LEYFYREMRKKHQILVDEAGQPEGGQWNFDHENRESFGSSGPGKLPAPLKFSADTITQEV 227

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQ 244
           T     RF   P +  D    +   +AL +L+ F +  +  +    D           S+
Sbjct: 228 TDLVRARFPSNPGEVFDETLAVTRVDALKLLKHFVRHHLPRFGRYEDAMWTGEATLHHSR 287

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL++ +L+PR+C     E +    +   S        L WREF R +   +      
Sbjct: 288 LSVYLNVKLLNPRECVQVAVEAYQAGHVDLASTEGFVRQILGWREFIRGIYWSHMPRYAE 347

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F    + +           W  G T    +  +M  +   G+ H+  R++    L + 
Sbjct: 348 LNFFEHQQPLPSFF-------W-DGQTEMVCVRESMSHVLKHGYAHHIHRLMVLGNLSQT 399

Query: 365 LLVDWRIGEEYFMSQLLDG-DLAS--NNGG-WQWAASTGNDSVPY-------FRIFNPTI 413
                    ++ M+  LD  D  S  N  G  Q+       + PY        R+ N   
Sbjct: 400 FGAHPYQFHQWHMAMYLDAIDWVSLPNTLGMSQFGDGGIVGTKPYCATGAYISRMSN-FC 458

Query: 414 QGKRFDPQ 421
           Q  +FDP+
Sbjct: 459 QSCQFDPK 466


>gi|311254470|ref|XP_003125864.1| PREDICTED: neurogenic locus notch homolog protein 2-like, partial
            [Sus scrofa]
          Length = 2368

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%)

Query: 160  PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               +  +    Q    +    A+    P              +       +  +     +
Sbjct: 1196 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCKKGEQCV 1255

Query: 220  RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277
                  + +      +    +     SP    G   P++   +   +          +  
Sbjct: 1256 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1311

Query: 278  AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
                                   VC         +    +    +   W    +  P  D
Sbjct: 1312 TAPPSAPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCTSPLPCWD 1371

Query: 338  AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
                Q + +      L                +   ++F     D    S   GW
Sbjct: 1372 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFRDNHCDQGCNSEECGW 1426


>gi|126727586|ref|ZP_01743419.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703176|gb|EBA02276.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium
           HTCC2150]
          Length = 511

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 93/363 (25%), Gaps = 42/363 (11%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYE 113
           +  FI++++      L+++G+  +Y +  + D++      +     +  + ++      E
Sbjct: 46  KIAFIFSAMRHFAAELAEQGLNLRYVRYDDPDNAGSLSGEVARAVGKHEIDEVIVTTPSE 105

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---- 169
                      + L   V  +S D  +            +       F + + +      
Sbjct: 106 YRLSDDMSRWAQALNVHVSIRSDDRFLSSASDFAAWADGRKQLRMEFFYREMRRRYSILM 165

Query: 170 ---------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                       D  +   P+  L  P T    P         +           L    
Sbjct: 166 DQDGPIGGQWNYDAENRKPPSNGLDVPTTYRAYPDAITQEVMDLVGTHFADHFGDLTPFH 225

Query: 221 K-----------------FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
                               K    Y             S +  YL+ G+L P +C  R 
Sbjct: 226 FAVTRDQAIVAFEEFIARRLKMFGDYQDAMIQGEPWMFHSHIGLYLNCGLLEPLECIQRA 285

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           +  + +      +        L WRE+ R +            F      +         
Sbjct: 286 EAAYHNGTAPLNAVEGFIRQILGWREYVRGIYWLKMPDYKTVNFFDAQRSLPEFY----- 340

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD- 382
             W    T    +   + +     + H+  R++          +D      ++M    D 
Sbjct: 341 --W-TADTQMNCMRQCITETKQNAYAHHIQRLMVLGNFALIAGLDPDEVNNWYMLVYADA 397

Query: 383 GDL 385
            + 
Sbjct: 398 YEW 400


>gi|126313624|ref|XP_001367754.1| PREDICTED: similar to notch 2 preproprotein [Monodelphis domestica]
          Length = 2527

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 41/248 (16%), Gaps = 3/248 (1%)

Query: 147  ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
             L +        T   +     L            +       P+         F     
Sbjct: 1337 QLINNYSCVCRSTFTGRHCETFLDVCPQMPCLNGGVCAVASNMPNGFICHCPPGFSGARC 1396

Query: 207  MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKE 265
                G        +             R      G +   P    G  SP ++       
Sbjct: 1397 QSTCGHMKCKKGEQCVHTTLGPRCFCPRPEDCETGCAS-GPCRHGGSCSPQKEPPYYACR 1455

Query: 266  EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQ 324
                        +             RH           +            +    +  
Sbjct: 1456 CPPSFWGSHCEFSSGPTLGPPPTCLSRHCADKARDGVCDEDCNSHACHWDGGDCSLTMED 1515

Query: 325  AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
             W    +  P  D    Q + +      L                +   ++F     D  
Sbjct: 1516 PWANCSSPLPCWDRINHQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFNDNHCDQG 1575

Query: 385  LASNNGGW 392
              S    W
Sbjct: 1576 CNSEECAW 1583


>gi|256372763|ref|YP_003110587.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009347|gb|ACU54914.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 502

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 96/372 (25%), Gaps = 37/372 (9%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
           + +F+ +  +        ++ H I A + +    L  +G      +   F    E L ++
Sbjct: 31  VVLFVVSRAKLAARPWHRQRLHAILAGMARFAAELRAEGFRVDEREADTF---TEGLAAH 87

Query: 98  CLQQRVTKLFYNRQYEIN-----EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
               R   +                   +L+   L      +  +               
Sbjct: 88  RASYRPETVRMMAPESFAGEALARRLGVELVASNLFLTTREEFGEWIAQTLERGRRPRME 147

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
           + Y+        L+     A  R       RL  P  P   P         +D       
Sbjct: 148 EFYRWQRRRLGILMDEDGPAGGRWNFDSENRLPPPRAPVAWPTVIVDQLDQLDVRIVASL 207

Query: 213 QNALHILRKFCKEKVYYYVEQR-----------------DIPAIQGTS----QLSPYLSI 251
            +                   R                 D             LS  L++
Sbjct: 208 PDQAVGDPPQGWWPTNRVGALRRLRAFIDEGLSRFGPYEDAMLADEPRLAHSMLSVALNL 267

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G+L P +    ++  F D  +   S        + WRE+ R    +       +  +   
Sbjct: 268 GLLHPHEVVEAVERAFRDGRVGLSSAEGFLRQVIGWREYVRGFYWWQGPTYRSQNALGAE 327

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
             +          A   G T    +   +  +   GW+H+  R++  + L     V    
Sbjct: 328 RPLPP--------ALATGRTRMRCVRTTLEGVERHGWVHHIQRLMVLANLGTLTGVQPAA 379

Query: 372 GEEYFMSQLLDG 383
             ++   + +DG
Sbjct: 380 MLDWMWERFVDG 391


>gi|124267244|ref|YP_001021248.1| putative alpha-deoxyribodipyrimidine photolyase-like protein
           [Methylibium petroleiphilum PM1]
 gi|124260019|gb|ABM95013.1| putative alpha-deoxyribodipyrimidine photolyase-related protein
           [Methylibium petroleiphilum PM1]
          Length = 510

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 20/176 (11%)

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           PR+  +     +                 L WRE+ R +              P   ++ 
Sbjct: 281 PREVVDAAVAAYRGGAAPLAGVEGFVRQILGWREYVRGIYWTRM---------PGYAELN 331

Query: 316 WNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L AW   G T    +  A+ Q    G+ H+  R++        L V  +    
Sbjct: 332 ALDAREDLPAWYWTGDTEMACLRDAITQTLQHGYAHHIQRLMVTGLYALMLGVQPQQVHA 391

Query: 375 YFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
           ++++  +D     +L +  G  Q+A      S P      Y +  +P  QG R+DP
Sbjct: 392 WYLAVYVDAVEWVELPNTLGMSQYADGGLMGSKPYVATGKYIQRMSPHCQGCRYDP 447


>gi|260823635|ref|XP_002606186.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
 gi|229291525|gb|EEN62196.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
          Length = 560

 Score = 41.0 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 40/238 (16%), Gaps = 7/238 (2%)

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
                       R   +   + +         +  +        + P+     ++     
Sbjct: 311 HGPAHTRAHHCLRNNEQRSTERYHHYPWSWCNTRSDDHGCTRYHHYPWSWCNTRSDDHGC 370

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVE 232
            R    P              R+  YP+   +      G     H     C    + Y  
Sbjct: 371 TRYHHYPWSWCYTWSNDHGCTRYHHYPWSWCNTRSDDHGCARYHHYPWNRCYTWSHNYSC 430

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R                         W+                           +   
Sbjct: 431 NRYYHYPWSWCNTRSDHHGCTRYHHYPWSWCYTWSHHYGCTRYHHYPWSWCNTRSHDHGC 490

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                YP           T   +     +    W + YT             T  W +
Sbjct: 491 TRYHHYPWS------RCNTRSHDHGCTRYHNYPWNRCYTWSHHYGCTRNNDYTWSWCN 542


>gi|284989242|ref|YP_003407796.1| deoxyribodipyrimidine photolyase-like protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284062487|gb|ADB73425.1| deoxyribodipyrimidine photolyase-related protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 528

 Score = 40.6 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSP +++G+L P +  +  ++ + D + +      + +   + +        ++
Sbjct: 277 WMTHSLLSPAVNLGLLDPIEEVHAAEQRYRDSVAEGDPLPLNSVEGFVRQVMGWRDYIWH 336

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                G+ F               L     G      +   +  L   GW+H+  R++  
Sbjct: 337 TYWHFGRDFRHANALAAHEAVPDWLADLDDGAVDAACMSDVLGDLRRDGWVHHIPRLMVL 396

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                   +D     ++F    +D  D 
Sbjct: 397 GNYALQRGIDPLAMTDWFHRSFVDGYDW 424


>gi|150026081|ref|YP_001296907.1| hypothetical protein FP2042 [Flavobacterium psychrophilum JIP02/86]
 gi|149772622|emb|CAL44105.1| Protein of unknown function related to deoxyribodipyrimidine
           photolyase [Flavobacterium psychrophilum JIP02/86]
          Length = 520

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 94/342 (27%), Gaps = 26/342 (7%)

Query: 64  SLLQVQKSLSQKGIVFQY----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +L    K+L Q      Y    +Q  +     E L ++C    ++    + ++ ++    
Sbjct: 88  NLQAFDKNLQQLINKEHYTHFEYQLPDEYRLDELLKNFCQTLSISTSVADSEHFMSTREE 147

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                   +  ++   +          +  +     K                    L  
Sbjct: 148 LGNFFDGKKTFLMESFYHMMRKKHNVLMQGNKPLTGKWNYDGENRKKLPKNHKPTSPLGF 207

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                                  A + ++P     +  +L  F  E +  +   +D    
Sbjct: 208 NNDVSEIVAEIHKSNIKTIGNIDAKNFVWPTTRTQSSKLLDFFVTECLTLFGSYQDAMTP 267

Query: 240 Q----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRH 293
                  S++S  +++ ++SP +  NR  +E+     +             + WRE+ R 
Sbjct: 268 NQWSLYHSRISFSMNVKLISPLEVINRAIQEWESRPDQIAYNQLEGFVRQIIGWREYMRG 327

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +            +     K+           W  G T    +   + Q     + H+  
Sbjct: 328 IYWNKMPQYATMNYFENQNKLPQWF-------W-TGKTKMNCLKDTINQSLNFAYAHHIQ 379

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           R++          V+    + +++   +D          QW 
Sbjct: 380 RLMITGNFALLAGVNPDEVDAWYLGIYIDA--------IQWV 413


>gi|171057935|ref|YP_001790284.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170775380|gb|ACB33519.1| deoxyribodipyrimidine photolyase-related protein [Leptothrix
           cholodnii SP-6]
          Length = 513

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 119/422 (28%), Gaps = 59/422 (13%)

Query: 26  LYAACHNSDAKVIAVFIATPE---------QWRQHGISARQS-------HFIYASLLQVQ 69
              A   +   +  + +  P          Q     +   +          +  ++  V 
Sbjct: 61  FAQALRAAGRPLHPMRLDDPTNQGSLAAQLQADIERLRPARLVMTAPGDWRVLQAIKDVA 120

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +     G+  +  +  +F  S+    ++   ++  ++           R  +     L  
Sbjct: 121 Q---AHGLPLEIREDRHFYGSVREFAAHARGRKSLRM-------EYFYREMRKRHGVLMQ 170

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +    +           A               + + + D  +  V A+       
Sbjct: 171 GEQPEGGQWNFDADNREAFGAAGPGSVPP--------RAVFEPDAMTREVIALVEARLAD 222

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                  F +P      +  +       +      +   +  E          + LS  L
Sbjct: 223 HPGRLDDFAWPVSREQALVALQRFVTERLPLFGRYQDAMWPGE-----PWLHHAHLSAAL 277

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++ +L+PR+  +     +        S        L WRE+ R +              P
Sbjct: 278 NLKLLNPREVVDAAVAAYRAGAAPLASVEGFVRQILGWREYVRGIYWTRM---------P 328

Query: 310 WTEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++        L AW   G T    +  A+ Q    G+ H+  R++          V 
Sbjct: 329 GYAELNTLDAQEDLPAWYWTGATDMACLRDAIGQTLQHGYAHHIQRLMVTGLFALMYGVQ 388

Query: 369 WRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRF 418
            +    ++++  +D     +L +  G  Q+A      S P      Y +  +P  +G R+
Sbjct: 389 PQQVHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYVATGKYIQRMSPYCKGCRY 448

Query: 419 DP 420
           DP
Sbjct: 449 DP 450


>gi|109112699|ref|XP_001117324.1| PREDICTED: endothelial cells scavenger receptor [Macaca mulatta]
          Length = 610

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 32/238 (13%), Gaps = 5/238 (2%)

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ     +  D    +P     +   +      P           A   S          
Sbjct: 39  LQCCAGWRQKDQECTIPICEGPDACQKDEVCVKPGLCRCKPGFFGAYCSSRCPGQYWGPD 98

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                                       A       C                      S
Sbjct: 99  CRENCPCHPHGQCEPATGACQCQAHRWGAHCEFPCTCGPHGRCDPAT--GVCRCEPGWWS 156

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P          +     +     +      G                        C    
Sbjct: 157 PTCHRPCQCKPEAARCEQATGACVCKPGWWGRRCSFRCTCHGSPCDQDSGRCA--CRPGW 214

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + P   +           A  Q     P    A  +L      H      +      +
Sbjct: 215 WGPECRQQCECVRGRCSAASGQCTCP-PGFRGARCELPCPAGSHGVQCAHSCGHCKHN 271


>gi|118375412|ref|XP_001020891.1| hypothetical protein TTHERM_00411970 [Tetrahymena thermophila]
 gi|89302658|gb|EAS00646.1| hypothetical protein TTHERM_00411970 [Tetrahymena thermophila
           SB210]
          Length = 1813

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/296 (8%), Positives = 51/296 (17%), Gaps = 7/296 (2%)

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALI 166
                      +         +  I   ++             +        T      I
Sbjct: 250 SQECRSCINNCQTCTKSDDCSNCQIGYGYNYQKQQCAQCYQGCSNCDQNLSCTECFSGYI 309

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           Q     +        I   G  T  N           I       +           +  
Sbjct: 310 QTTNPKNNSQQYCKMICSAGQFTFINWQTMAQQCNPCISNCTQCSQDKQCDTCTANYEYI 369

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +  +  +         + Y     +S  Q     +               +    + 
Sbjct: 370 QQVFQCKI-VCQQNQYRDTTFYNCTNCVSNCQKCVDGQSCSQCQSNYEYVSEVNSCLVIC 428

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
               YR+    Y         I  T        +   +   Q      +      + +T 
Sbjct: 429 NNNQYRNPQNNYLCADCIDNCISCTNGQSCTTCTQDHEYVSQVNKCLHVCLQNQFRDSTQ 488

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG-----WQWAAS 397
            ++         S             + ++           NN       WQ    
Sbjct: 489 NYLCQNCHQSCQSCTGPAQSQCRSCYQGWYQLGSFCYQWCPNNYKEDSTLWQCVQC 544


>gi|302557423|ref|ZP_07309765.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
 gi|302475041|gb|EFL38134.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
          Length = 498

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 9/155 (5%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            P +C    ++ +        S          WRE+   L  ++         +  T  +
Sbjct: 268 DPAECVGEAEKAWRAGRAPLNSVEGFVRQIAGWREYVWQLYWYFGEDYRDSNALGHTAPL 327

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
               +     A +        +   + Q+   GW H+  R++           D     +
Sbjct: 328 PDWWNDLDADAVRA-----NCLRTVLAQVRDTGWTHHIPRLMILGSHALQRGWDPAAVTD 382

Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
           +F    +D  D     +  G  Q+A      + PY
Sbjct: 383 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417


>gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300075805|gb|ADJ65204.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 519

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 114/398 (28%), Gaps = 30/398 (7%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY-------ASLLQVQKSLSQKGIV 78
           L+ A      KV+A+F A  +   +      +  +I         SL+    +L++    
Sbjct: 51  LHHA-----QKVLALFAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQA 105

Query: 79  FQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSF 136
            Q   Q  +     E L  +   Q +     + ++ + +      L    +   +     
Sbjct: 106 SQVQWQAPDEWRVDEALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYR 165

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                       + +    +               A+      P                
Sbjct: 166 QMRRRFELLLEADGSPTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVP 225

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE----QRDIPAIQGTSQLSPYLSIG 252
                QA    +P+  + AL  L  F    +  + +              S LS  L++ 
Sbjct: 226 TFGDPQASQLRWPLNREEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVK 285

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           +L P +   R +E + +      +        + WRE+ R +          +  +    
Sbjct: 286 MLHPLEVVRRAEEAYREGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGL 345

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           W  G T    +  A+ Q       H+  R++          +D +  
Sbjct: 346 PLPAWF-------W-TGQTRMRCLQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKAL 397

Query: 373 EEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
            ++++   +D     +L +  G  QWA      + PY 
Sbjct: 398 HQWYLGVYIDAFEWVELPNTLGMSQWADGGIIATKPYV 435


>gi|91217385|ref|ZP_01254345.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus
           torquis ATCC 700755]
 gi|91184493|gb|EAS70876.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus
           torquis ATCC 700755]
          Length = 523

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 94/322 (29%), Gaps = 15/322 (4%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L + C +  ++    + ++   +    +   K  +   +   + D        +LN    
Sbjct: 124 LKTICNKLSISSQAKDSEHFFTKRDDVQNFYKGKKEMTMEYFYRDMRKKHEIMMLNDKKP 183

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGE 212
               +   +    +   +  +         + G +                +   +P   
Sbjct: 184 EGGQWNFDKSNRKKWTGKPPIPKFKGFDKNVEGVLKQIETMGIKTMGRIDQEKFPWPTSR 243

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           +  L +L  FC   + ++ +  D           S+LS  ++  +LSPR+      + + 
Sbjct: 244 KECLEVLDYFCTHLLVHFGDYEDALHTDEKFLFHSRLSFSMNSKMLSPREVIETTLDYYY 303

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           D   +        +   I +                  +    E    NK          
Sbjct: 304 DHKEEIDISQ---IEGFIRQILGWREFMRGVYWQEMPEYKSKNELQNTNKLPDFYW---T 357

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----D 384
           G T    +  ++ Q     + H+  R++         + D    + +++   +D     +
Sbjct: 358 GDTKMNCLKHSVNQSLDDAYAHHIQRLMILGNFALLTMTDPDEVDAWYLGVYIDAIEWVE 417

Query: 385 LASNNGGWQWAASTGNDSVPYF 406
           L +  G  Q+A      + PY 
Sbjct: 418 LTNTRGMSQFADGGIVATKPYV 439


>gi|295837931|ref|ZP_06824864.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
 gi|295826748|gb|EDY46118.2| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
          Length = 504

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C    +  + +      S          WRE+   L       
Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYREGEAPLNSVEGFVRQIAGWREYVWQLYWH---- 316

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ +                 +   G      +   + Q+   GW H+  R++     
Sbjct: 317 -FGEDYRSLNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 423


>gi|295135591|ref|YP_003586267.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia
           profunda SM-A87]
 gi|294983606|gb|ADF54071.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia
           profunda SM-A87]
          Length = 515

 Score = 40.6 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/323 (8%), Positives = 86/323 (26%), Gaps = 11/323 (3%)

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDKL 122
             +++ + +  I    +Q  +     + L   C    +    Y   +     N++ +   
Sbjct: 88  ENLKQLIKKNDIEKFEYQLPDEYRLDQQLKEICKSLSIDSEAYDTEHFLTTRNDLEKFYD 147

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +K++      +       +   +  +     +      RK           R       
Sbjct: 148 GKKQMTMEYFYRDMRKKYDIMMATKNDPEGGKWNFDKSNRKKWTGTPEIPHERGFRKDVS 207

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ--RDIPAIQ 240
            L   +  + I    +   ++ +      +  ++           +   +       A  
Sbjct: 208 HLVKEIEQAGIKTMGNINEKSFNWPSSREDSLSVLNYFCKNLLVHFGDFQDALHTDHAYL 267

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LS  ++  +LSP++  +     + +   K        +   + +            
Sbjct: 268 FHSRLSFCMNTKMLSPKEVIDSAISYYYEHKDKIDISQ---VEGFVRQILGWREYMRGIY 324

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 +    +    N+          G T    +  A+ Q     + H+  R++    
Sbjct: 325 WLKMPGYRRRNKLDNQNELPPFYW---DGKTKMNCLHHAITQSLDNAYAHHIQRLMITGN 381

Query: 361 LVKDLLVDWRIGEEYFMSQLLDG 383
                       + +++   +D 
Sbjct: 382 YALLTQCHPDEVDAWYLGIYIDA 404


>gi|13242247|ref|NP_077334.1| neurogenic locus notch homolog protein 2 precursor [Rattus
            norvegicus]
 gi|20138817|sp|Q9QW30|NOTC2_RAT RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch
            2; Contains: RecName: Full=Notch 2 extracellular
            truncation; Contains: RecName: Full=Notch 2 intracellular
            domain; Flags: Precursor
 gi|13162674|gb|AAK13558.1| NOTCH2 [Rattus norvegicus]
          Length = 2471

 Score = 40.6 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/246 (6%), Positives = 44/246 (17%), Gaps = 6/246 (2%)

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
               +          +  +    Q    +    A+    P              +      
Sbjct: 1288 YQCVCRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNVPDGFICRCPPGFSGARCQSSCG 1347

Query: 209  PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267
             +  +     +        +      +    +     +P    G   P RQ         
Sbjct: 1348 QVKCRRGEQCVHTASGPHCFCP----NHKDCESGCASNPCQHGGTCYPQRQPPYYSCRCS 1403

Query: 268  VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326
                        +  +        ++           +       +    +    +   W
Sbjct: 1404 PPFWGSHCESYTAPTSTPPATCLSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463

Query: 327  KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
                +     +    Q + +      L                +   ++F     D    
Sbjct: 1464 ANCTSSLRCWEYINNQCDELCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDKGCN 1523

Query: 387  SNNGGW 392
            +   GW
Sbjct: 1524 NEECGW 1529


>gi|332141441|ref|YP_004427179.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551463|gb|AEA98181.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 512

 Score = 40.6 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 31/365 (8%), Positives = 89/365 (24%), Gaps = 46/365 (12%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+++++      L        Y   ++  +  + L     +  +++  ++       
Sbjct: 47  KIAFLFSAMRHFAAHLRDNNYQVNYVHYTDEGNQGDLLAQV--KHTLSRQHFDEVKVTVP 104

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                L   +     +             S  N   +        R       ++     
Sbjct: 105 GEYRLLKSMQQWQNQLGIPVTICEDNRFFSTPNEFSEWADGKKQLRMEFFYREMRRKHNV 164

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           L      + G        R      Q +         +    + +  K +   +    D 
Sbjct: 165 LMDGKNPIGGKWNYDAQNRESMPETQKVPKHTTFAIDDITSDVIELVKSEFSEHFGDIDN 224

Query: 237 PA-----------------------------------IQGTSQLSPYLSIGVLSPRQCWN 261
                                                    S ++ YL+ G+L+P++   
Sbjct: 225 FHFAVTRKDALSVLNTFIEERLPNFGQYQDAMVEGKPWLYHSHIAFYLNCGLLTPKEAIQ 284

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
             ++ +    +   S        L WRE+ R     +        +   +  +       
Sbjct: 285 AAEQAYHAGQVPLNSAEGFIRQILGWREYVRGFYWHFMPNLKTDNYFDNSRALPSFF--- 341

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               W    T    +   +++     + H+  R++          +     + +++    
Sbjct: 342 ----W-DAQTNMNCMRQCIKETQQNAYAHHIQRLMVIGNFSLLTELSPEEVQAWYLLVYA 396

Query: 382 D-GDL 385
           D  + 
Sbjct: 397 DAYEW 401


>gi|311978263|ref|YP_003987466.1| putative deoxyribodipyrimidine photolyase-related protein
           [Acanthamoeba polyphaga mimivirus]
 gi|311788811|gb|ADQ12922.1| putative deoxyribodipyrimidine photolyase-related protein
           [Acanthamoeba polyphaga mimivirus]
          Length = 393

 Score = 40.6 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 77/276 (27%), Gaps = 19/276 (6%)

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSY-CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
                  Y++   F      L +    Q   +K   N+++  +        +  +     
Sbjct: 117 SYNQKIIYYESPGF-----ILTNLDLKQYTGSKQGANKKFFQHSFYAWFRKKFDILMDGN 171

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
                                 Y+        L       +     + A +       + 
Sbjct: 172 KPIGGKYSYDKYNRQTIPNKNFYQFLDDNNINLETKKYVNEY---YLEAQKYCENTFENF 228

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSI 251
            P  ++     + P+      +      +        Y +  D        S +SP L+ 
Sbjct: 229 YPNNYNPENIQLYPINHADIISHFDYFVENKLPYFGMYEDAIDFDDPYLFHSVISPQLNS 288

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G+++PR   +++ +++             ++ +L+WRE+ R L  +     M   F    
Sbjct: 289 GLITPRYVLDKVIDKYNKSNTDLLYEVEGYIRQLVWREYSRMLYRYIRKDMMKNYFGNKN 348

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
              E          W  G TG   +D A+      G
Sbjct: 349 RISEI---------WYTGNTGIEPVDLAISSAFQYG 375


>gi|291448405|ref|ZP_06587795.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351352|gb|EFE78256.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 540

 Score = 40.6 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L+P +C +R +E +        S          WRE+   L   +   
Sbjct: 297 HSLLSVPLNLGLLAPAECVDRAEEAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 356

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +  T  +          A          +   + Q+   GW H+  R++     
Sbjct: 357 YRDRNALRHTALLPGWFLDLDADA-----VTAHCLSTVLAQVRDTGWTHHIPRLMVLGSR 411

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 412 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 459


>gi|20138876|sp|O35516|NOTC2_MOUSE RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch
            2; AltName: Full=Motch B; Contains: RecName: Full=Notch 2
            extracellular truncation; Contains: RecName: Full=Notch 2
            intracellular domain; Flags: Precursor
 gi|2373395|dbj|BAA22094.1| cell surface protein [Mus musculus]
          Length = 2470

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%)

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
             + +          +  +    Q    +    A+    P              +      
Sbjct: 1286 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARLQSSCG 1345

Query: 209  PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267
             +  +     +      + +      +    +     +P    G   P RQ  +      
Sbjct: 1346 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 1401

Query: 268  VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326
                        +  +        ++           +       +    +    +   W
Sbjct: 1402 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1461

Query: 327  KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
                +     +    Q +        L                +   ++F     D    
Sbjct: 1462 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 1521

Query: 387  SNNGGW 392
            S   GW
Sbjct: 1522 SEECGW 1527


>gi|332993098|gb|AEF03153.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas sp.
           SN2]
          Length = 512

 Score = 40.2 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 32/322 (9%), Positives = 83/322 (25%), Gaps = 31/322 (9%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q+     G+       + F  S +    +   ++  ++           R  +   
Sbjct: 110 LKSMQQWEQSLGVPVSIINDARFLASPKEFSDWAHDRKQLRM-------EFFYREMRRKH 162

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L           +        +     +         A+ Q+++    +        +
Sbjct: 163 GILMEDKSPIGGKWNYDAQNREPMPAGTNVPTHTQFKIDAITQDVIDLVEKEFSDHFGDI 222

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +                  I+   P   Q    ++                       S 
Sbjct: 223 SPFHFAVTRDDALTVLSDFIEERLPHFGQYQDAMVEGKPWLYH---------------SH 267

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           ++ YL+ G+LSP++  +  +  +        S        L WREF R     +      
Sbjct: 268 IAFYLNCGLLSPKEAIDAAESAYYAGTAPLNSVEGFIRQILGWREFVRGFYWHFMPSLKS 327

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +      +           W  G T    +   +++     + H+  R++        
Sbjct: 328 DNYFNHNRSLPDFF-------W-NGQTNMNCMRQCIKETQANAYAHHIQRLMVLGNFCLL 379

Query: 365 LLVDWRIGEEYFMSQLLD-GDL 385
             +     +++++    D  + 
Sbjct: 380 TGLSPEEVQQWYLLVYADAYEW 401


>gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 516

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 132/447 (29%), Gaps = 55/447 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R+  N +L  + H S      + I  P +      S R   FI   +    K
Sbjct: 26  LYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWSSLRLHKFILEGMSYNIK 85

Query: 71  SLSQKGIVFQYH---QCSNFDDSIE-----------------WLDSYCLQQRVTKLFYNR 110
              + G+ ++       +  +++ E                  +     Q          
Sbjct: 86  EAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYPAYIIPELLEQVSKKIKCKFL 145

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
             + N +       + +    I +     +        +               L +N  
Sbjct: 146 AVDSNSIIPLTFYGEFVSAARILRPRVHKLFPEVWKFRSFHKPNKPFREKGDSWLEKNPN 205

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               +++          ++       F++      P    G +  + +L+KF K  +  Y
Sbjct: 206 SPLKKNIWFEG--DVDQISEICKKCNFNFQNIPPVPGKKGGREEGIKLLQKFLKRGLSGY 263

Query: 231 VEQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--- 284
            E R  P       +S LSPY+  G +S  +  + +    +D    P        N    
Sbjct: 264 AELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSEVLNWNLDGSWTPGVIIPENKNRKEG 323

Query: 285 ---------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHL 322
                          + WR+    +    PS       +P          K +     + 
Sbjct: 324 YFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYT 383

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQ 379
            +  +   T   I +AA ++L   G M N LRM+    +++        + I EE+    
Sbjct: 384 KEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKY 443

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYF 406
             DG   ++  G  W    G    P+F
Sbjct: 444 AYDGRDPNSYNGILW--CFGLFDRPWF 468


>gi|333025959|ref|ZP_08454023.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071]
 gi|332745811|gb|EGJ76252.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071]
          Length = 504

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C    +  + +      S          WRE+   L       
Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYREGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ +                 +   G      +   + Q+   GW H+  R++     
Sbjct: 317 -FGEEYRELNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|301612125|ref|XP_002935580.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like, partial
            [Xenopus (Silurana) tropicalis]
          Length = 1940

 Score = 40.2 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/278 (8%), Positives = 47/278 (16%), Gaps = 6/278 (2%)

Query: 77   IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
            I     Q +   D +          R      +   ++ E    K  E RL    +C   
Sbjct: 1283 INLTLRQRNQIGDCLMLCCQNHPDVRTPVRTADDFKKVPEGGCTKKCEFRLDCGHVCTRV 1342

Query: 137  DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                               K+         +   +     +    +    P+        
Sbjct: 1343 CHPYDPEHKEY-QCNKPCQKILCEEGHRCKKTCFKPCGPCM--ELVPKNMPLCGHVQMVP 1399

Query: 197  FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
               P +      P  +  +          +       +D+ A      +           
Sbjct: 1400 CSIPVRTFCCEIPCTKFLSCGHQCGKLCGEECEDHCIQDVEAELKCGHIQKIKCWKKRDI 1459

Query: 257  --RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
                     K     L    K                         +C      P T + 
Sbjct: 1460 EFGMPVQCRKPCHATLSCGHKCPGNCHSCTQGRFHVTCRHPCKRLLICSHPCQEPCTNEC 1519

Query: 315  EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                     +            +     +    W    
Sbjct: 1520 PPCNRVCRNRC-IHSQCKKKCGERCTPCMEPCDWKCEH 1556


>gi|89094240|ref|ZP_01167182.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92]
 gi|89081495|gb|EAR60725.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92]
          Length = 513

 Score = 40.2 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 18/302 (5%)

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP------PG 145
             LD+  LQ +  +L      + + +      +  L+ +   +       L         
Sbjct: 110 RVLDTLSLQIKGRQLSLQVLPDNHFMTEPGEFQHWLKDKKQPRMEYWYRYLRKKHNILIN 169

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205
                  + +      R+   +           +    +T  V         D P     
Sbjct: 170 DFGKPEGEKWNFDASNRRPFGKKGPPTPGNHPDITPDNMTLEVIDEINTLIPDLPGSLNS 229

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWN 261
             +P+  + AL +L  F  +++  + + +D    Q      S LS  L++ +L P +   
Sbjct: 230 FEWPVCRKQALSLLDSFISDRLPLFGDFQDAMWQQEPFLNHSWLSSSLNLKLLHPWEVIE 289

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
              + + +      +        L WRE+ R L   Y         +     +       
Sbjct: 290 AAIQAYKNGNAPLNAVEGFIRQILGWREYVRGLYWTYSQKWEQMNALEHHRDLPAFY--- 346

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               W  G T    +  ++ Q+   G+ H+  R++           D +    +++   +
Sbjct: 347 ----W-NGDTKMNCLRESISQVLEKGYGHHIQRLMVTGLFALLYGADPQQVHRWYLGMYV 401

Query: 382 DG 383
           D 
Sbjct: 402 DA 403


>gi|156094272|ref|XP_001613173.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax SaI-1]
 gi|148802047|gb|EDL43446.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax]
          Length = 2662

 Score = 40.2 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/295 (7%), Positives = 60/295 (20%), Gaps = 27/295 (9%)

Query: 64   SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +L   ++ L +K               ++                         R DK  
Sbjct: 2385 NLADYKEWLGKKEYPLI-------KKIVDIWSKIVN--------CRVMIWYKYFRGDKEE 2429

Query: 124  EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +    +        D              +  K +    +   + +     + +      
Sbjct: 2430 QGMPINPEWQNWMQDLKNEWSRYNAYIHKERNKWFQKKEEEFHKFIEDFQFKWMHYNKEL 2489

Query: 184  LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            L                 + I  +   G             +   +  + +    +    
Sbjct: 2490 LEDHSFDVYKKSLKWQDSKWIKWIEKDG-------ESIMMMDMEKWIDKVKSEYDLWLLK 2542

Query: 244  QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
                + +  ++        L E+  D         +S     + +E              
Sbjct: 2543 DWEQWKTNKIMD-----WLLSEKKCDQYQYWLKWEYSNEKTSLRKERIDWYKWKKIRQSE 2597

Query: 304  GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             K +  W  + +          W         I  +M       W+  +   + A
Sbjct: 2598 AKEWQKWVREKDQALLEVKNAIWLNWKEDKKNIFFSMLHHFINNWIAKKQWNVWA 2652


>gi|283778295|ref|YP_003369050.1| deoxyribodipyrimidine photolyase-like protein [Pirellula staleyi
           DSM 6068]
 gi|283436748|gb|ADB15190.1| deoxyribodipyrimidine photolyase-related protein [Pirellula staleyi
           DSM 6068]
          Length = 541

 Score = 39.8 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYP 299
             SQ+S  +++ +L PR+     ++ +    ++  S        L WRE+ R +   + P
Sbjct: 288 FHSQISSAMNLKLLDPREVIEAAEQAYRRGDVELASAEGFIRQILGWREYVRGIYWLYMP 347

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                          ++                   +   + Q    G+ H+  R++   
Sbjct: 348 EYLERNHLHATRTLPDFYWTGETPMR---------CLRETITQTLETGYAHHIQRLMVTG 398

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
                  +  +    ++++  +D     +L +  G  Q+A      S PY          
Sbjct: 399 LFALLAGIRPQEVHAWYLAVYIDAIEWVELPNTLGMSQYADGGVMASKPYV--------- 449

Query: 416 KRFDPQGTFIRH 427
                 G +I+ 
Sbjct: 450 ----ATGKYIQR 457


>gi|330683894|gb|EGG95665.1| hypothetical protein SEVCU121_0018 [Staphylococcus epidermidis
           VCU121]
          Length = 49

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 435 VPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
           +  +YIH P  + DK        +  +YP  IV+HK +  + ++++  
Sbjct: 1   MSRKYIHDPTKYKDKLQEIYHIEIGQDYPKTIVNHKNSRDYVMDKFKQ 48


>gi|322435348|ref|YP_004217560.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium
           sp. MP5ACTX9]
 gi|321163075|gb|ADW68780.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium
           sp. MP5ACTX9]
          Length = 565

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 96/398 (24%), Gaps = 60/398 (15%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS--L--------SQKG 76
           + A   +   V  ++  +P+                 +LL +Q+S  L        +++ 
Sbjct: 76  HFALEQAAKGVKVLYHFSPDSHG-------------QALLHLQQSNKLPAITCMTPAERE 122

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           +    HQ               +       + +   +   V       K        +  
Sbjct: 123 LRLDLHQAQQQG--------LDITFAEDTTWASSTKDFTTVYGPYKQGKSYVMDRFYRRM 174

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                +   +      Q             +  V       P    +    +        
Sbjct: 175 RQQTGILMQNAKPIGGQFSFDADNRSPYKHEVPVPTPPTYPPDTITQEVIALVEQTYAHH 234

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPYLSIGVLS 255
           F        P                       + +  RD       S+ S  L++G L 
Sbjct: 235 FGTTEDFDLPCTQSDSDAFWQFFLTHQLPHFGRFEDAMRDDHLQLFHSKTSVLLNLGRLL 294

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKI 314
                  +     +      S        L WREF RHL        +    +P    K+
Sbjct: 295 AMDLIRDVAARAAEGTAPMASCEGFIRQLLGWREFMRHLHEQTDGYRLLAGHVPQEPRKV 354

Query: 315 EWNKDSHLLQA-------WKQGYT-------------------GFPIIDAAMRQLNTIGW 348
                     A       W QG T                   G   +D  ++Q+   GW
Sbjct: 355 PHEFSPDAPGAPRLDSETWVQGATPSALGASLTLPAAYWGIESGLHCLDTVVKQVIHEGW 414

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
            H+  R++  S L        R   ++F    +D  D 
Sbjct: 415 SHHITRLMVLSNLANLCGFSPRELTDWFWFAYVDAYDW 452


>gi|294339499|emb|CAZ87858.1| putative Deoxyribodipyrimidine photolyase-related protein
           [Thiomonas sp. 3As]
          Length = 519

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 89/319 (27%), Gaps = 28/319 (8%)

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ + +  G+  +  +  +F  S     ++   ++  ++           R  +   
Sbjct: 119 MQSIKAAAAALGVPLEVREDRHFYASPTDFAAHARGRKQLRM-------EFFYRAMRQRH 171

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L           +           +   +                 D  +  V A+  
Sbjct: 172 DVLMEGDQPAGGQWNFDADNREAFPKSGPGHVPSPAQF--------APDAITREVIALVN 223

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +   +   F +P      +  +       + +    +   +  E          + 
Sbjct: 224 QRFASHPGMLADFAWPVTRSQALQALERFMRERLPQFGQWQDALWPNE-----PWLWHAH 278

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L++ +L+PR+     +  +        S        L WRE+ R +          
Sbjct: 279 LSAALNLKLLNPREVVEAAQTAWRQGQAPLHSAEGFIRQILGWREYVRGIYWTQMPGYAE 338

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +     +           W  G T    +  A+ Q    G+ H+  R++        
Sbjct: 339 RNALGVQAPLPAWF-------W-SGQTDMACLRDALAQTLRYGYAHHIQRLMVIGLYALL 390

Query: 365 LLVDWRIGEEYFMSQLLDG 383
             V  +   ++F++  +D 
Sbjct: 391 HGVQPQQVHQWFLAVYVDA 409


>gi|239944944|ref|ZP_04696881.1| hypothetical protein SrosN15_28410 [Streptomyces roseosporus NRRL
           15998]
 gi|239991408|ref|ZP_04712072.1| hypothetical protein SrosN1_29162 [Streptomyces roseosporus NRRL
           11379]
          Length = 508

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L+P +C +R +E +        S          WRE+   L   +   
Sbjct: 265 HSLLSVPLNLGLLAPAECVDRAEEAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 324

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +  T  +          A          +   + Q+   GW H+  R++     
Sbjct: 325 YRDRNALRHTALLPGWFLDLDADA-----VTAHCLSTVLAQVRDTGWTHHIPRLMVLGSR 379

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405
                 D     ++F    +D  D     +  G  Q+A      + PY
Sbjct: 380 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 427


>gi|302520313|ref|ZP_07272655.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78]
 gi|302429208|gb|EFL01024.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78]
          Length = 504

 Score = 39.8 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C    +  + +      S          WRE+   L       
Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYSEGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ +                 +   G      +   + Q+   GW H+  R++     
Sbjct: 317 -FGEEYRGLNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|318057368|ref|ZP_07976091.1| hypothetical protein SSA3_05476 [Streptomyces sp. SA3_actG]
 gi|318080957|ref|ZP_07988289.1| hypothetical protein SSA3_30741 [Streptomyces sp. SA3_actF]
          Length = 504

 Score = 39.8 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS  L++G+L P +C    +  + +      S          WRE+   L       
Sbjct: 261 HSLLSAPLNLGLLDPAECAELAEHAYREGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ +                 +   G      +   + Q+   GW H+  R++     
Sbjct: 317 -FGEEYRELNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375

Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405
                 D     ++F    +D  D     N  G  Q+A      + PY
Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|159901997|gb|ABX10727.1| deoxyribodipyrimidine photolyase-related protein [uncultured
           planctomycete 13FN]
          Length = 515

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 15/285 (5%)

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           +     +E        K L      +       +            +      R++  ++
Sbjct: 134 HFYCSPDEFAEYADGRKSLLLEFFYRDLRKRHDILMADAKQPEGGQWNFDHDNRESFGRS 193

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
                 +        +T  V      RF ++P        P+  + A   L+ F +  + 
Sbjct: 194 GPGEISQPKSFRPDAVTKDVVDLVEHRFAEHPGNLNHFTLPVTRRQAKAFLKHFIESILP 253

Query: 229 YYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            + +  D           S+LS  L++ +L PR+C +   + +        S        
Sbjct: 254 NFGKWEDAMWTGEAFLYHSRLSAPLNMKLLHPRECVDAAVQAYRTGKAPLNSVEGFVRQI 313

Query: 285 LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           L WREF R +     P       F    E   +            G T    +  +M+Q+
Sbjct: 314 LGWREFIRGIYWLKMPEYVELNHFDHQRELPSFFW---------DGDTEMSCVKQSMQQV 364

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-DLAS 387
              G+ H+  R++      +   V  R+  E+ M+  +D  D  S
Sbjct: 365 IDHGYSHHIHRLMVLGNFAQLWGVHPRLFHEWHMAMYVDAIDWVS 409


>gi|325108590|ref|YP_004269658.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324968858|gb|ADY59636.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 519

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 78/268 (29%), Gaps = 16/268 (5%)

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
              + L+ +       D          +H  +     +     L     + D  +  V A
Sbjct: 156 YFYRWLRKKHNILIESDGSPTGGDWNYDHDNRESFNKSGPASGLKPRRFRPDETTQEVIA 215

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +  +           FD P    +    + E     +      E   +  E         
Sbjct: 216 LVESRFADHPGSLEHFDLPVTHTEARTKLREFIKHGLPNFGEFEDAMWTGET-----YLY 270

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPS 300
            S LS  L++ +L+PR+C     E + +      S        L WREF R +     P 
Sbjct: 271 HSHLSACLNLKLLNPRECIELAVEAYENGDAPLNSVEGFVRQILGWREFVRGIYWTHMPE 330

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F    E   +  D                +  +M  +    + H+  R++    
Sbjct: 331 YAEKNYFDHDREVPSFFWDGETDMR---------CVRESMSHVVNHSYAHHIHRLMVLGN 381

Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387
           L + + V      E+ M+  LD  D  S
Sbjct: 382 LSQTVGVHPLKFHEWHMAMYLDAIDWVS 409


>gi|296135393|ref|YP_003642635.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas
           intermedia K12]
 gi|295795515|gb|ADG30305.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas
           intermedia K12]
          Length = 519

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 18/327 (5%)

Query: 67  QVQKSLSQKGIVF----QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +   L +                    ++ + +      V       ++          
Sbjct: 91  SLDAELQRAVQRLRPTQLVMTQPGDWRVLQSIKAAAAAHGVPLELREDRHFFASPSDFAT 150

Query: 123 LEKRLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +  +   +   +                A   +      R+A  ++            
Sbjct: 151 HARGRKQLRMEFFYRAMRQRHDVLMEGDQPAGGQWNFDADNREAFPKSGHGHVPSPAQFA 210

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              +T  V      RF  +P    D  +P+    AL  L +F +E++  + + +D     
Sbjct: 211 PDAITREVISVVNQRFASHPGTLADFAWPVTRPQALQALERFMRERLPQFGQWQDALWPN 270

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 + LS  L++ +L+PR+     +  +        S        L WRE+ R +  
Sbjct: 271 EPWLWHAHLSAALNLKLLNPREVVEAAQTAWRQGEAPLHSAEGFIRQILGWREYVRGIYW 330

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                   +  +     +           W  G T    +  A+ Q    G+ H+  R++
Sbjct: 331 TQMPGYAERNALGAQAPLPAWF-------W-SGQTDMACLRDALAQTLRYGYAHHIQRLM 382

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG 383
                     V  +   ++F++  +D 
Sbjct: 383 VIGLYALLHGVQPQQVHQWFLAVYVDA 409


>gi|294085610|ref|YP_003552370.1| deoxyribodipyrimidine photolyase-like protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665185|gb|ADE40286.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 515

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 96/364 (26%), Gaps = 42/364 (11%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSN----------FDDSIEWLDSYCLQQRVTK 105
           R+  F+++++    + L +KGI   Y    +             +I       L      
Sbjct: 50  RKVAFLFSAMRHFAEELRRKGITVHYVTLDDSKNTGSFTSEVGRAITLFAPDRLILTEPG 109

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
            +  R       +   +  +         + D+  +   G         Y+        L
Sbjct: 110 EYRVRAAMDEWRQVLDVDVEIRDDDRFLCTHDEFSIWAEGRKQLRMDFFYRDMRRRFDIL 169

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           +Q       +       R +  +T      +   P      +  +               
Sbjct: 170 MQGDTPIGDKWNYDADNRESPDLTQVVPAPYRCPPDDITKEVLTLVAARCADHFGSLEDF 229

Query: 226 KVYYYVEQ-----------------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                 +                         +       S +  YL+ G+L+P +    
Sbjct: 230 DFAVTRKGALEVLAKFIDERLPLFGKFQDAMIEDEPWMYHSHIGFYLNAGLLTPLEVIKA 289

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +++E+ +      +        L WREF R +            ++  +  +        
Sbjct: 290 VEQEYHNGNAPLNAVEGFIRQILGWREFIRGIYWLKMPGYAALNYLEASRPLPALF---- 345

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W  G T    +  ++ Q     + H+  R++          +D  +  E+++    D
Sbjct: 346 ---W-TGDTRMNCMRQSISQTARYAYAHHIQRLMVLGNFALLTGLDPVMVNEWYLVVYAD 401

Query: 383 -GDL 385
             + 
Sbjct: 402 AYEW 405


>gi|239994037|ref|ZP_04714561.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii ATCC 27126]
          Length = 512

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 9/274 (3%)

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
                   +  ++        +      +L  G         Y           Q + + 
Sbjct: 136 PQEFTDWAEGKKQLRMEFFYREMRRKHNVLMEGKNPIGGKWNYDAQNREAMPETQRVPKH 195

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               +     ++   V       F D                    + +       Y   
Sbjct: 196 STFEIDDITSKVIELVKSEFSDHFGDINNFHFAVTRKDALSVLNTFIEERLPNFGQYQDA 255

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             +       S ++ YL+ G+L+P++  +  ++ +    +   S        L WRE+ R
Sbjct: 256 MVEGKPWLYHSHIAFYLNCGLLTPKEAIHAAEQAYHAGQVPLNSAEGFIRQILGWREYVR 315

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                +        +   +  +           W    T    +   +++     + H+ 
Sbjct: 316 GFYWHFMPNLKTDNYFNNSRALPSFF-------W-DAQTNMNCMRQCIKETQQNAYAHHI 367

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
            R++          +     + +++    D  + 
Sbjct: 368 QRLMVIGNFSLLTELSPEEVQAWYLLVYADAYEW 401


>gi|238024328|ref|YP_002908560.1| Deoxyribodipyrimidine photolyase-like protein [Burkholderia glumae
           BGR1]
 gi|237878993|gb|ACR31325.1| Deoxyribodipyrimidine photolyase-related protein [Burkholderia
           glumae BGR1]
          Length = 509

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 102/361 (28%), Gaps = 18/361 (4%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
             R    I A+L  + +SL  + I +        D  +    +            +    
Sbjct: 75  DPRNRQAIPANLDLLAESLGARRIEYLLPDEWRLDQQLRAYAAASAIPVAAVDTGHFYTT 134

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            + +R      +        ++      +   +    A   +      R+A      +  
Sbjct: 135 RDALREAMGAGRPWVMDRFYRAMRVRHRILLDADGAPAGGRWNYDADNRQAWSGQPPEPA 194

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L   +  +           A D  +P+    AL  L +F ++ + ++ + 
Sbjct: 195 DWRPRHDHRELWARIEAAG--VHSFGKPSADDLRWPVDRDEALACLDRFIRDALPWFGQF 252

Query: 234 RDIPAIQGTSQLSPYLSI----GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +D             LS      +L PR+   R +  +    +   +        L WRE
Sbjct: 253 QDAMHTSAPRLFHSMLSFALNVKMLDPREVVARAEAAYRAGAVPLAAAEGFIRQILGWRE 312

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R +                   +           W  G T    +  A++Q       
Sbjct: 313 FVRGVYWARMPDYARSNGFGHRRALPDWF-------W-NGNTRMACMSHALQQSLDHAHA 364

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           H+  R++          +D +    +++   +D     ++ +  G  Q+A      + PY
Sbjct: 365 HHIQRLMVIGNFALLAGLDPQAVHAWYLGVYIDAFEWVEMPNTLGMSQYADGGAMATKPY 424

Query: 406 F 406
            
Sbjct: 425 V 425


>gi|291239472|ref|XP_002739649.1| PREDICTED: Plasminogen-like [Saccoglossus kowalevskii]
          Length = 1326

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 50/249 (20%), Gaps = 5/249 (2%)

Query: 123  LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + K  +H      +  +                       +    +    D R      I
Sbjct: 936  MYKCSEHCGTDVPYCGADGYVGPKCTCVCHHGVGDDCHEPRQCYSSYNGEDYRGGVNVTI 995

Query: 183  RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG- 241
                    S+   +         P   +G+ N         +       +  D       
Sbjct: 996  GGLECQMWSDQSPWLHTYVPENYPDAGVGDHNYCRNPDGDDQPWCITLDDDIDWQYCDIG 1055

Query: 242  TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
             S  +      +      +    +   D  +  K             E+           
Sbjct: 1056 QSSDTCLYECYLKRDGTDYFGTVDITTDGTLCQKWSEQ----SPHTHEYSTSRYPKGGLG 1111

Query: 302  CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   P  +   W   S     W+    G P  +    +  T    ++    +  +  
Sbjct: 1112 DHRYCRNPDFDDAPWCFTSDPDIRWQYCDVGQPTENCGETECYTAVNGNDYRGSVHVTQS 1171

Query: 362  VKDLLVDWR 370
            +++      
Sbjct: 1172 LRECRRWTH 1180


>gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum]
          Length = 765

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/295 (5%), Positives = 56/295 (18%), Gaps = 7/295 (2%)

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
             V    +   +               ++     S  +       +  N     +  ++ 
Sbjct: 264 YWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSF 323

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
             +         +   + +   R            +    ++  D               
Sbjct: 324 NFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNT 383

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +    V +     +            +  +     R  ++  K  + +           
Sbjct: 384 GYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWR--FDFWKRYWFNSWYDWNWYWHW 441

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
                 +  +  +   +  +      F         N +      WK+        ++  
Sbjct: 442 NRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRY-----WFNSWY 496

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
                  W     R     +          +  +++           +   W W 
Sbjct: 497 DWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWV 551



 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/257 (5%), Positives = 48/257 (18%), Gaps = 1/257 (0%)

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
           +    +    +    +   +    +         ++            +           
Sbjct: 464 KWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYN 523

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
              +  +    + R                N+ RF  +     +  +             
Sbjct: 524 WNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHS 583

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
               K Y +  + +   +        +           W  +             G  SW
Sbjct: 584 RYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNFNLWRFDFWKWYGFNSW 643

Query: 282 LNELIWREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +   +R +   H    +           +    ++   +     W      +  I+   
Sbjct: 644 YDWNWYRHWDRFHSRYNWKWYRFNTGHNWYRIYFDFWSFNFRKWYWFYSRYNWYRINFNF 703

Query: 341 RQLNTIGWMHNRLRMIT 357
              +   W         
Sbjct: 704 WSFDFRKWYWFYTWYNW 720



 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/256 (5%), Positives = 53/256 (20%)

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
                  +         +R +      +      +  +       +  N     +  ++ 
Sbjct: 68  WINFNWNWYWFNSWLNWQRKRFYSWFDRSWKRFYTGYNWKWYWFYARYNWNGVNFDFWSF 127

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
             +         +   + +   R            +    ++  D               
Sbjct: 128 NFRKWYWFYSGYNWYWVNLNLWRFDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNT 187

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +    V +     +            +  +     R  + +             +  F 
Sbjct: 188 GYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWINFNFW 247

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             N   W  FY     ++ ++ + +             D +  + W + ++ +       
Sbjct: 248 SFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGF 307

Query: 341 RQLNTIGWMHNRLRMI 356
                  W++      
Sbjct: 308 NTRYNWNWVNFDFWSF 323


>gi|149030534|gb|EDL85571.1| notch gene homolog 2 (Drosophila), isoform CRA_a [Rattus norvegicus]
          Length = 2471

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/246 (6%), Positives = 44/246 (17%), Gaps = 6/246 (2%)

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
               +          +  +    Q    +    A+    P              +      
Sbjct: 1288 YQCVCRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNVPDGFICRCPPGFSGARCQSSCG 1347

Query: 209  PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267
             +  +     +        +      +    +     +P    G   P RQ         
Sbjct: 1348 QVKCRRGEQCVHTASGPHCFCL----NRKDCESGCASNPCQHGGTCYPQRQPPYYSCRCS 1403

Query: 268  VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326
                        +  +        ++           +       +    +    +   W
Sbjct: 1404 PPFWGSHCESYTAPTSTPPATCLSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463

Query: 327  KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
                +     +    Q + +      L                +   ++F     D    
Sbjct: 1464 ANCTSSLRCWEYINNQCDELCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDKGCN 1523

Query: 387  SNNGGW 392
            +   GW
Sbjct: 1524 NEECGW 1529


>gi|238059205|ref|ZP_04603914.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149]
 gi|237881016|gb|EEP69844.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149]
          Length = 523

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 26/208 (12%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS   ++G+L P +     +  +        +        L WREF   L  +    
Sbjct: 280 HSVLSSSFNLGLLDPAEAIRAAEGAWRKGAASLSAVEPFVQGLLGWREFLWQLYWYLEPG 339

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  ++   E +          A          +   +  +    W+H+  R++     
Sbjct: 340 HRGANWLAANEPLPDWFAGLDADA-----VEARCLADVLAGVRDRAWVHHAQRLLVLGNY 394

Query: 362 VKDLLVDWRIGEEYFMSQLLDG-DLASN---NGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
                        +F    +DG D A N    G  Q+A     D+ PY            
Sbjct: 395 ALQRGWRPAELAGWFRDCFVDGTDWAMNATVIGMSQYADLGRVDTRPYA----------- 443

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHS 445
               G     ++ EL++  T   + P +
Sbjct: 444 --VDG----RYVDELSDYCTGCRYQPET 465


>gi|170751994|ref|YP_001758254.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658516|gb|ACB27571.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 534

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 54/406 (13%), Positives = 113/406 (27%), Gaps = 47/406 (11%)

Query: 37  VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS---IEW 93
           V+ V +     + +H    ++  F++A++      L  +G+   Y + ++  ++      
Sbjct: 40  VLIVEVRDEATYVRHHK--QKIAFLFAAMRHFAAELEAEGLAVDYVRLTDAGNTGSFTGE 97

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L+    + R  ++      E       +   + L   V  ++ +  +            +
Sbjct: 98  LERAVARHRPDRVVVTEPGEWRVWEMMQDWRETLAIPVEIRADNRFLCPREDFSRWAEGR 157

Query: 154 MYKVYTPFRKALIQNL-------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
            +     F + + +           A  R    P  R   P       R    P      
Sbjct: 158 HHLRMETFYRGMRRRTGLLMDDDEPAGGRWNYDPENRKRLPKGQQPPDRIGFQPDAVTRQ 217

Query: 207 MF-----PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ----------------- 244
           +        G+         +   +       R   A    +                  
Sbjct: 218 VIALVEAEFGDHFGDLTGFSWPVTRADALAALRHFLADALPTFGDYQDAMKTGAPFLYHA 277

Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP L+ G+L+  +     +  + D +             L WRE+ R L         
Sbjct: 278 LLSPALNAGLLTAEEVCWAAERAYRDGVAPLHCVEGFIRQILGWREYVRGLYWARMPGYR 337

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +     + W         W  G T    +   + +     + H+  R++       
Sbjct: 338 DSNALGAGRDLPWFY-------W-SGETALNCVAQVVGETRAHAYAHHIQRLMVTGNFAL 389

Query: 364 DLLVDWRIGEEYFMSQLLD-GDLA--SNNGGW-QWAASTGNDSVPY 405
              +D    EE+++    D  +     N  G   WA      S PY
Sbjct: 390 IAGLDPAQVEEWYLIVFADAYEWVELPNVHGMVLWADGGVMGSKPY 435


>gi|149925197|ref|ZP_01913492.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
 gi|149813925|gb|EDM73576.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
          Length = 231

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 11  LVWL--RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L W+      R   N AL  A  +++     + +  P +      S R   F+   +   
Sbjct: 29  LHWMIAHR--RTRHNFALQHALFHAERLQKPLVVLEPLRVGYRWASDRMHRFVLEGMAVN 86

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
            +  ++ G+ +  +           L +    
Sbjct: 87  ARRFAKAGVTYLPYVEDRPGAGSGLLAALAQD 118


>gi|312090737|ref|XP_003146725.1| thrombospondin type 1 domain-containing protein [Loa loa]
 gi|307758111|gb|EFO17345.1| thrombospondin type 1 domain-containing protein [Loa loa]
          Length = 981

 Score = 39.4 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/300 (7%), Positives = 58/300 (19%), Gaps = 22/300 (7%)

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           +    +       + + +E R  H+V+      +                K  + +    
Sbjct: 325 MIQRYRICNEGECKGENVEWRKCHQVVPCVASWADWTSWSICSVTCGIGEKTRSRYCYLG 384

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           +     +D   +    +   G     +                 I + N           
Sbjct: 385 MGYCTGSDHEIIQCETVPCPGWGQWESWSHCSVTCGTGTKRRSRICDGNNCIGDAYQETY 444

Query: 226 KVYY----YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFS 280
                   + E ++  A   +          V   R+C     ++             + 
Sbjct: 445 CHQDECEEWSEWQEWSACSVSCGEGVITRERVCMGRECIGESSEQNVCMEQACSTWQEWG 504

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG-----YTGFPI 335
             +    +  +           +  P               +  AW++        G  +
Sbjct: 505 QWSACSAKCNFGISTRKRLCHGIFCPGKRVEIMPCHAGRCMIWSAWQEWSECSVTCGSGM 564

Query: 336 IDAAMRQLNTIG------------WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                  +                 +         ++              +     LDG
Sbjct: 565 QQRYRTCIGADCPGNAEDIQYCETGVSCPQWTEWTAWSKCSQDCGIGERIRHRECLFLDG 624


>gi|301617896|ref|XP_002938366.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like, partial
            [Xenopus (Silurana) tropicalis]
          Length = 2091

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/321 (9%), Positives = 61/321 (19%), Gaps = 26/321 (8%)

Query: 110  RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
              Y  +       +     H    +  D     P   ++       K          +  
Sbjct: 1541 CMYPCDFRLPCGHVCTLNCHPYDSEHKDYVCNKPCHKVICENGHTCKNKCSEPCGKCKQP 1600

Query: 170  VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            V   +               P +                  G +      +         
Sbjct: 1601 VPKQIEKCGHI------QDIPCSQSADTFVCKAHCAQFLQCGHKCVRWCGQTCTINCPEK 1654

Query: 230  YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             +   +      T       +    +  +C  R +E+     + P S             
Sbjct: 1655 VIVTLECGHTMKTLCHLKSKAEKDGTKIRCSVRCEEKLSCGHLCPGSCNSCLEQGFHHSC 1714

Query: 290  FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
                 +    S    +        I   +               P     M  L      
Sbjct: 1715 NNSCDIILLCSHRCEEKCAAGCFCIRACEKKCFHGK-CTSKCSDPCTPCTM--LCGWCCA 1771

Query: 350  HNRLRMITASFLVKDLLVDWRIGEEYFMSQL----LDGDLASNNGGWQWAASTGNDSVPY 405
            H +   +   +   D         +    +     L G+                D+   
Sbjct: 1772 HEKCTKLC--WEPCDREPCNEPCNKSLKCKHPCIGLCGEPCP-------QKCRICDAEEV 1822

Query: 406  FRIFNPTIQGKRFDPQGTFIR 426
              +F     GK  DP   F++
Sbjct: 1823 TELF----FGKEDDPDARFVK 1839


>gi|255263576|ref|ZP_05342918.1| bcct transporter [Thalassiobium sp. R2A62]
 gi|255105911|gb|EET48585.1| bcct transporter [Thalassiobium sp. R2A62]
          Length = 508

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 55/415 (13%), Positives = 117/415 (28%), Gaps = 44/415 (10%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA  + D  V+A  +        H    ++  F+ AS+ +  K L + G   +Y Q 
Sbjct: 18  ALEAADKSHDVVVMAEVVDETGYVPHH---PKKIAFVLASMRKFAKRLRRDGWTVRYTQL 74

Query: 85  SNFDDSIEWLDSYCLQQRVTKLF----------------------YNRQYEINEVRRDKL 122
            + D++   +           +                        +   +   +     
Sbjct: 75  DDDDNAGSIVGELMRAADELGVHDVIATEPGEWRLISALEDIPLEISILPDTRFIATHTE 134

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E+  + R   +       +   + L       K          +     ++        
Sbjct: 135 FEEWAEGRKELRMEWFYRDMRRKTGLLMDGDKPKGGKWNYDHDNRKAPPKEIDFSGPLRF 194

Query: 183 RLTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                V+         +                   +Q   H +     +   Y      
Sbjct: 195 EPDDEVSAVLDLVEQRFGQNFGDLRPFWFATDHEGAQQQVDHWIAGGLAQFGDYQDAMIT 254

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                  S +S Y+++G+L P     +++  +   +    +        + WRE+ R + 
Sbjct: 255 DQPFLFHSVVSFYINVGLLDPLAVCRQVETAYRAGVAPLNAAEGFIRQIIGWREYMRGIY 314

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                    +  +  +  +           W  G T    I+ A+ Q     + H+  R+
Sbjct: 315 VLEGPDYTSRNALGHSRDLPAFF-------W-GGETNMRCIEQAVGQTQEHAYAHHIQRL 366

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
           +          +D R   E++++   D  +   A N  G  Q+A      S PY 
Sbjct: 367 MVTGNFALIAGIDPRQVHEWYLAVYADAFEWVEAPNVIGMSQFADGGIVASKPYV 421


>gi|293377912|ref|ZP_06624093.1| LPXTG-motif cell wall anchor domain protein [Enterococcus faecium
           PC4.1]
 gi|292643459|gb|EFF61588.1| LPXTG-motif cell wall anchor domain protein [Enterococcus faecium
           PC4.1]
          Length = 1498

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391
           +P   A   Q     +  N    +  ++   +       G  Y    L+D  D       
Sbjct: 232 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 291

Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435
           W+   +AA  G+ +       N   Q  +             D  G +I+ W+ P L+N 
Sbjct: 292 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 349

Query: 436 PTQYIH 441
           PT  +H
Sbjct: 350 PTSDLH 355


>gi|257895102|ref|ZP_05674755.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium Com12]
 gi|257831667|gb|EEV58088.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium Com12]
          Length = 1341

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391
           +P   A   Q     +  N    +  ++   +       G  Y    L+D  D       
Sbjct: 75  YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 134

Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435
           W+   +AA  G+ +       N   Q  +             D  G +I+ W+ P L+N 
Sbjct: 135 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 192

Query: 436 PTQYIH 441
           PT  +H
Sbjct: 193 PTSDLH 198


>gi|227552322|ref|ZP_03982371.1| von Willebrand factor, type A [Enterococcus faecium TX1330]
 gi|227178545|gb|EEI59517.1| von Willebrand factor, type A [Enterococcus faecium TX1330]
          Length = 1518

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391
           +P   A   Q     +  N    +  ++   +       G  Y    L+D  D       
Sbjct: 252 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 311

Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435
           W+   +AA  G+ +       N   Q  +             D  G +I+ W+ P L+N 
Sbjct: 312 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 369

Query: 436 PTQYIH 441
           PT  +H
Sbjct: 370 PTSDLH 375


>gi|326404142|ref|YP_004284224.1| hypothetical protein ACMV_19950 [Acidiphilium multivorum AIU301]
 gi|325051004|dbj|BAJ81342.1| hypothetical protein ACMV_19950 [Acidiphilium multivorum AIU301]
          Length = 312

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 12  VWLR---NDLRITDN-KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           VW++     LR  D+  AL AA       V+ VF   P    ++ ++     F++ +
Sbjct: 140 VWIKAHERLLR--DHRPALLAAAERGVQVVLIVF-GDPSVVDEYPLAPPSRIFMHEN 193


>gi|257094709|ref|YP_003168350.1| deoxyribodipyrimidine photolyase-like protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047233|gb|ACV36421.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 512

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 106/375 (28%), Gaps = 34/375 (9%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI-------YASLLQVQKSLSQKGIV 78
           L+ A      K+IA+F A  +  RQ   +  + H++         +L     +L    I 
Sbjct: 44  LHHA-----QKIIAIFAAMRDLARQLRAAGHRVHYLTIDDPDNRQALPD---NLDALMIR 95

Query: 79  FQYHQCSNFDDSIEW-----LDSYCLQQRVTKLFYNRQYEINEVRR----DKLLEKRLQH 129
           F       +    EW     L  Y   + +       ++               ++ +  
Sbjct: 96  FNVRALE-YQTPDEWRLDAQLADYGRSRSIPCRMVESEHFYTLRDEAARLFSGRKQWVME 154

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +          +L  G+      Q    +   +         AD R+    +      V+
Sbjct: 155 KFYRHMRVQHRVLTHGASQPVGGQWNFDHDNRKPWPGLPSEPADFRASHDHSALWQTIVS 214

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPY 248
                       Q   P+        L    +        + +     A +   S LS  
Sbjct: 215 AGVNSFGEANAGQLAWPLNRADALQQLDAFIEKALPHFGLFQDAMSHRAWRLFHSLLSFA 274

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+  +L PR+   R +  +    +   +        + WRE+ R     +    + +   
Sbjct: 275 LNTKMLDPREVVARAEAAWHAGCVSLATAEGFIRQIIGWREYVRGFYWAHMPEYVEQNVF 334

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
             T  +           W  G T    +  A+ Q     + H+  R++          +D
Sbjct: 335 DHTRALPGWF-------W-NGQTKMRCLAHAIGQSLEQAYAHHIQRLMVIGNFALLAGLD 386

Query: 369 WRIGEEYFMSQLLDG 383
                 +++   +D 
Sbjct: 387 PAGVHRWYLGVYVDA 401


>gi|257051353|ref|YP_003129186.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus
           utahensis DSM 12940]
 gi|256690116|gb|ACV10453.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus
           utahensis DSM 12940]
          Length = 510

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 53/395 (13%), Positives = 97/395 (24%), Gaps = 55/395 (13%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
               D  V+   I       +     ++   +++++   +  L   G    YHQ   F D
Sbjct: 18  AERPDEPVLL--IEAHAFAERLPYHPQKLTLVFSAMRHFRDELRDAGRDVHYHQVETFGD 75

Query: 90  SIEW----------------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            ++                       L S   ++  +             +         
Sbjct: 76  GLDAHFDDTPADDLRMMCPAGGDADRLRSLVEERGGSLEIVENSLFCCSRKLFDDWAADR 135

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                        +      L    +              N         P         
Sbjct: 136 TGDNYRHEDFYRHIRRETGYLMDDDEPVG---GEWNYDEDNRETPPDDWTPPGPPTFERD 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------------------Y 228
               ++  +    F       P G   A     ++   +                    Y
Sbjct: 193 EITRDVDSWVADRFDGSYDEAPYGGSWADPEAFRWPVTRQQALSALEDFCTDRLATFGSY 252

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
               QRD       S LS  L++G+L PR+   R  + F        S        L WR
Sbjct: 253 QDAMQRD-SWAMSHSLLSSSLNLGLLDPREVIERAIDTFERGDAPLNSVEGFVRQVLGWR 311

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF RH+             +  TE +           W  G T    +   +  +   G+
Sbjct: 312 EFMRHVYRRERDELGAANQLNATEPLPDFF-------W-TGETDMACLADVIEGVRRRGY 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            H+  R++  S       ++ R    +F +  +D 
Sbjct: 364 SHHIERLMVLSNFGTTFGIEPRALNRWFHAAYVDA 398


>gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 523

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 123/445 (27%), Gaps = 55/445 (12%)

Query: 8   SVHLVWL---RNDLRITD-NKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           S  L W+   R      D N A   A       + ++I   +    +      S R   F
Sbjct: 46  SYVLYWMQAYRR----FDANHAFNHAVNLAKELNKELI---VYEGLRMDYPWNSERIHQF 98

Query: 61  IYASLLQVQKSLSQKGIVFQ--YHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I   +++ Q    +  I +        N     ++ +                  E  E 
Sbjct: 99  ILEGMIENQTRADELEIKYWPFVETPKNLGKGLLKEISENASVVVTDDFPCFIIPEQTEK 158

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175
              K+  + L                  +     L ++K        +   + + +    
Sbjct: 159 LAKKIHCQLLAIDGNSLIPFSRFAKQASAARILRLWIHKELNREFPKMNTIIWKNEDLSK 218

Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                  P            +         +       G   AL +L  F K K+  Y+ 
Sbjct: 219 LNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYLT 278

Query: 233 QRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284
           +R  P       TS LSPYL  G +   + +  + +        P+  +     +     
Sbjct: 279 KRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFY 338

Query: 285 -------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQ 324
                        + WR+             +    +P          + +  +  + L+
Sbjct: 339 SPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLE 398

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQLL 381
            ++   T   + +AA  +L   G +HN +RM+    +++            E        
Sbjct: 399 QFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKKVIEWSKTYEEAFFILEHLNNKYAY 458

Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406
           DG   ++  G  W    G    P+F
Sbjct: 459 DGRNPNSYTGILW--CFGLFDRPWF 481


>gi|254468054|ref|ZP_05081460.1| deoxyribodipyrimidine photolyase family protein [beta
           proteobacterium KB13]
 gi|207086864|gb|EDZ64147.1| deoxyribodipyrimidine photolyase family protein [beta
           proteobacterium KB13]
          Length = 509

 Score = 39.0 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 83/295 (28%), Gaps = 8/295 (2%)

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +  D   L+ +     +   +  +        +                +L  G   
Sbjct: 112 EMKKITDQIGLEHQSYSTEHFLTHRQDLRDFFTKKKIWRMEEFYRHIRKKYSILMVGDKP 171

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                 Y      +    Q++      +  V  ++              D          
Sbjct: 172 IGDKWNYDQDNRKKWDPKQSIPDRIKFNHDVGHLKDEIDKLEIGYIGSVDTKNFNWPSNE 231

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
               Q   H +R    +   +     +       S +S  L+  +LSP +    ++E   
Sbjct: 232 EESLQVLNHFIRFSLDKFGDFQDAMSNENPYLFHSLISFALNTKMLSPLKIAETVEENLK 291

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             L    +        + WRE+ R +            F+ +  K+           W  
Sbjct: 292 KDLSNLSAVEGFIRQIIGWREYIRGVYWAKMPEYGQSNFLKFKNKLPEFF-------W-H 343

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           G T    +  +++Q     + H+  R++     +    VD ++  E+F++  +D 
Sbjct: 344 GKTNMNCLQKSIQQSLQHAYAHHIQRLMILGNFMLLSEVDPKLVHEWFLAIYIDA 398


>gi|325002489|ref|ZP_08123601.1| deoxyribodipyrimidine photolyase-related protein [Pseudonocardia
           sp. P1]
          Length = 496

 Score = 39.0 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 11/176 (6%)

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD       S LS  L++G L P +     ++ + D   + +S        L WREF   
Sbjct: 249 RDWAMAH--SLLSVPLNLGALHPLEAVRAAEQAYHDGTARLESVEGFVRQVLGWREFVWQ 306

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +         +     +          A          + +A+  +   GW H+  
Sbjct: 307 LYWRFGRGYTRSNHLRARTPLPDWWAGLDAGAVTAS-----CLSSALSDVRDRGWTHHIP 361

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           R++                 ++F +  +DG       +  G  Q A      + PY
Sbjct: 362 RLMILGNHAMQRGYRPDEVNDWFATAFVDGFAWVMPPNVIGMSQHADGGRMTTKPY 417


>gi|45383436|ref|NP_989691.1| ephrin type-A receptor 1 [Gallus gallus]
 gi|13517100|dbj|BAB40433.1| tyrosine kinase receptor EphA9 [Gallus gallus]
          Length = 969

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 87/325 (26%), Gaps = 11/325 (3%)

Query: 86  NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145
            +DD    +  +  +  V+ +         E         RL      K      +    
Sbjct: 596 PYDDPSRGVLEFIKELDVSCVTMENVIGEGEFGEVYRGSLRLP----GKERIVVAIKTLK 651

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205
           S  + +     +          +     L  +      +              +  +  +
Sbjct: 652 STYSDSQWWNFLREATIMGQFNHPNIVHLEGVVTKRRPMMIITEYMENGALDTFLRENEE 711

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
              P+   N L  +         +    RD+ A       S    +      +      E
Sbjct: 712 KFSPVQLVNMLQGIASGMTYLSEHNYVHRDLAARNILVTRSLQCKVSDFGLSRILENDAE 771

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              +         ++    +  R F      +   + M +      +      +  ++++
Sbjct: 772 GTYETKGGKIPIRWTAPEAIAHRIFTSASDVWSFGIVMWEVLSFGDKPYGNMTNQEVMKS 831

Query: 326 WKQGYTGFPIIDA--AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            + GY   P +D    + +L    W H+R+R      +   L         + +  + D 
Sbjct: 832 LEDGYRLPPPVDCPSILYELMKSCWSHDRMRRPHFQEIRAQLQHFS--SSPHLLRCVADF 889

Query: 384 DLASNNGGWQWAASTGNDSVPYFRI 408
           D        +  + +G+D +PY  I
Sbjct: 890 DPRVTL---RLPSCSGSDGIPYRSI 911


>gi|156094364|ref|XP_001613219.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802093|gb|EDL43492.1| hypothetical protein PVX_097795 [Plasmodium vivax]
          Length = 1565

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 36/147 (24%), Gaps = 2/147 (1%)

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E R+                   S  + ++  ++E + L I  K      L    ++   
Sbjct: 81  EHRNSVIANFNDLYGAKGRTITKSLMEIFHLNEDEEIMLFITQKFLHIYGLCVPCFKFSS 140

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            + +      C        T+         +L    +      +       L       +
Sbjct: 141 PNSVCSNNIRCKWCHHYSHTDTNSSLHPHKMLHMRSKCKVCSYLSRDGFCFLQNECHFCH 200

Query: 352 RLRMI--TASFLVKDLLVDWRIGEEYF 376
            +  +          +L D    +++ 
Sbjct: 201 SVEHLPSRVRQTYFHMLNDLYEKKKHT 227


>gi|187478087|ref|YP_786111.1| DNA photolyase [Bordetella avium 197N]
 gi|115422673|emb|CAJ49200.1| putative DNA photolyase [Bordetella avium 197N]
          Length = 538

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                SQLS  L++ +LS R+     +  +    +  +S        L WRE+ R L   
Sbjct: 288 PWLYHSQLSAALNLKLLSAREVVQAAELAYRAGRVPLQSAEGFIRQILGWREYVRGLYWT 347

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                      P   +         L AW   G T    +   + Q   +G+ H+  R++
Sbjct: 348 QM---------PGYLERNALGADEALPAWYWTGQTQMACLREVLHQTLALGYAHHIQRLM 398

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
            A      L V  +    ++++  +D     +L +  G  Q+A      S PY 
Sbjct: 399 VAGLFALLLGVRPQQLHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYV 452


>gi|260815713|ref|XP_002602617.1| hypothetical protein BRAFLDRAFT_81899 [Branchiostoma floridae]
 gi|229287928|gb|EEN58629.1| hypothetical protein BRAFLDRAFT_81899 [Branchiostoma floridae]
          Length = 712

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/285 (5%), Positives = 48/285 (16%), Gaps = 9/285 (3%)

Query: 97  YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156
           Y          Y R          +       H         +        + +    + 
Sbjct: 391 YARYNHDITNHYPRHNHGITNHYARYNHDITNHYPRHNHGITNHYARYNHDITNHYPRHN 450

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
                      + +                P     I   +      I    P    +  
Sbjct: 451 HGITNHYPRHNHGITNHYPRHNHYIYTNHYPRHNHGITNHYPRYNHDITNHCPRYNHHIA 510

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           +   ++  +   +Y       A           +          N        +      
Sbjct: 511 NHYARYNHDISNHYPRYNHHIANHYPRHNHDITNHYPRHNHGITNHYTRYNHGITNHYAR 570

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
                 N                +  +   +  +   I  +   H           +P  
Sbjct: 571 HNHGITNHYARHNHGITNHYARHNHGITNHYPRYNHGITNHYPRHNHGI----TNHYPRH 626

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           +  +   +   + H+    I   +   +  +       +      
Sbjct: 627 NHGITN-HYTRYNHH----IANHYSRYNHHIANHRTNYHIADHFT 666


>gi|260063634|ref|YP_003196714.1| hypothetical protein RB2501_02470 [Robiginitalea biformata
           HTCC2501]
 gi|88783079|gb|EAR14252.1| hypothetical protein RB2501_02470 [Robiginitalea biformata
           HTCC2501]
          Length = 510

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 69/308 (22%), Gaps = 18/308 (5%)

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--GSILN 149
           + L   C          + ++               +  V+   +              +
Sbjct: 110 QQLRELCEALDCETQAVDTEHFYTGRSDLAEFFDGKKQMVMESFYRMMRRKHQVLMDEGD 169

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                +      RK           R        L   +  + +    +    + +    
Sbjct: 170 PLGGRWNFDGDNRKKWKGEPEIPHERGFRKDLTALEQEIRDAGVETIGEVDADSFNWPTS 229

Query: 210 --IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
              G     H           Y             S+LS  L+  +LSPR+   +++  +
Sbjct: 230 RADGLAVLRHFCDSLLVHFGDYQDAMHTGEKYLFHSRLSFALNTKMLSPREVVEKVEATY 289

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            D                +          ++  +           +              
Sbjct: 290 RDDPDAIDLSQTEGFIRQVLGWREYMRGVYWKEMPGYADGNALGNENPLPDFYW------ 343

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G T    +  A+RQ     + H+  R++           D    + +++   +D     
Sbjct: 344 TGETKMNCLSHAIRQSLDTAYAHHIQRLMITGNYALLTQTDPDQVDAWYLGIYIDA---- 399

Query: 388 NNGGWQWA 395
                QW 
Sbjct: 400 ----IQWV 403


>gi|56752235|ref|YP_172936.1| hypothetical protein syc2226_c [Synechococcus elongatus PCC 6301]
 gi|81300677|ref|YP_400885.1| hypothetical protein Synpcc7942_1868 [Synechococcus elongatus PCC
           7942]
 gi|56687194|dbj|BAD80416.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169558|gb|ABB57898.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 143

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 18/83 (21%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N AL     +  A   A+++      +   IS ++  FIY  LL++              
Sbjct: 16  NPAL---LRHPKAP--ALWVWDDSLLKDWQISLKRVVFIYECLLEL---------PVTIR 61

Query: 83  QCSNFDDSIEWLDSYCLQQRVTK 105
           +     D    L  +        
Sbjct: 62  R----GDPATELRRFAQAHGADC 80


>gi|88802911|ref|ZP_01118438.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P]
 gi|88781769|gb|EAR12947.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P]
          Length = 493

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S L+P L++G+L+P     +         I   S        + WREF R       S
Sbjct: 260 NHSVLTPMLNVGLLTPENIVAQSIAFAKANNIPINSLEGFVRQIIGWREFMRGFYESRGS 319

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               + F  +T+KI          ++  G TG   ID  +++    G+ ++  R++    
Sbjct: 320 DARTRNFWEFTKKIPK--------SFYDGTTGIYPIDETIKKTLKTGYCNHIERLMILGN 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406
            +     D      +FM   +D  D     N  G  Q+A      + PY 
Sbjct: 372 FMMLCEFDPDEVYRWFMELFIDSYDWVMVPNVYGMSQFADGGLMATKPYI 421


>gi|309779651|ref|ZP_07674410.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921592|gb|EFP67230.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp.
           5_7_47FAA]
          Length = 513

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 50/402 (12%), Positives = 107/402 (26%), Gaps = 38/402 (9%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY-----------ASLLQVQKSLSQ 74
           L+ A      K++A+F A  +  R    +  +  ++             +L  +      
Sbjct: 45  LHHA-----QKILAIFAAMRDFARGLRAAGHRVRYVAIDDGSNRQSVTENLAALA---RH 96

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR----RDKLLEKRLQHR 130
            G      Q  +     E L  +   Q ++    + ++ +          +  ++ L  R
Sbjct: 97  YGAERVEWQSPDEWRLDEQLRRWAEAQSLSTSEVDTEHFLTGRHELAAMFEGRKQWLMER 156

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +      +L  G+    + Q    +   +         AD R +             
Sbjct: 157 FYREMRRRFGVLLDGTGAPESGQWNFDHDNRKPWRGSPPEPADARPVHDHRALWETIERS 216

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYL 249
                          P+        L             + +       +   S LS  L
Sbjct: 217 GVKSFGNPQAGALRWPLNRTEALACLDAFVAQVLPHFGDFEDAMSSGHQRLFHSLLSFSL 276

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFI 308
           ++ +L+PR+  +R +  +        +        L WRE+ R +     P         
Sbjct: 277 NVKMLNPREVIDRAEAAYRHGKAPLPAVEGFIRQILGWREYVRGIYWAQMPGYASCNVLN 336

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  W                   +  A+ Q       H+  R++          + 
Sbjct: 337 HDAPLPSWFWSGKTQMR---------CLQLAIGQSLQTAHAHHIQRLMVIGNFALLAGLA 387

Query: 369 WRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
                 +++   +D     +L +  G  QWA      + PY 
Sbjct: 388 PDEVHRWYLGVYIDAFEWVELPNTVGMSQWADGGRIATKPYV 429


>gi|257886511|ref|ZP_05666164.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,141,733]
 gi|257822565|gb|EEV49497.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,141,733]
          Length = 413

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391
           +P   A   Q     +  N    +  ++   +       G  Y    L+D  D       
Sbjct: 248 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSLYDGENLIDDSDYTIGGAN 307

Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435
           W+   +AA  G+ +       N   Q  +             D  G +I+ W+ P L+N 
Sbjct: 308 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 365

Query: 436 PTQYIH 441
           PT  +H
Sbjct: 366 PTSDLH 371


>gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating
           enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 496

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 123/445 (27%), Gaps = 55/445 (12%)

Query: 8   SVHLVWL---RNDLRITD-NKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           S  L W+   R      D N A   A       + ++I   +    +      S R   F
Sbjct: 19  SYVLYWMQAYRR----FDANHAFNHAVNLAKELNKELI---VYEGLRMDYPWNSERIHQF 71

Query: 61  IYASLLQVQKSLSQKGIVFQ--YHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I   +++ Q    +  I +        N     ++ +                  E  E 
Sbjct: 72  ILEGMIENQTRADELEIKYWPFVETPKNLGKGLLKEISENASVVVTDDFPCFIIPEQTEK 131

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175
              K+  + L                  +     L ++K        +   + + +    
Sbjct: 132 LAKKIHCQLLAIDGNSLIPFSRFAKQASAARILRLWIHKELNREFPKMNTIIWKNEDLSK 191

Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                  P            +         +       G   AL +L  F K K+  Y+ 
Sbjct: 192 LNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYLT 251

Query: 233 QRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284
           +R  P       TS LSPYL  G +   + +  + +        P+  +     +     
Sbjct: 252 KRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFY 311

Query: 285 -------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQ 324
                        + WR+             +    +P          + +  +  + L+
Sbjct: 312 SPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLE 371

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQLL 381
            ++   T   + +AA  +L   G +HN +RM+    +++            E        
Sbjct: 372 QFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKKVIEWSKTYEEAFFILEHLNNKYAY 431

Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406
           DG   ++  G  W    G    P+F
Sbjct: 432 DGRNPNSYTGILW--CFGLFDRPWF 454


>gi|89056132|ref|YP_511583.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp.
           CCS1]
 gi|88865681|gb|ABD56558.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp.
           CCS1]
          Length = 508

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 102/384 (26%), Gaps = 40/384 (10%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD----SIEWLDS---------YCLQQ 101
            ++  F++A++ +   +L   G   +Y +  + ++      E L +            + 
Sbjct: 46  PKKIAFLFAAMRKFAAALRDDGWQVRYTKLDDAENAGSIPGEILRACEATGAAEVLATEP 105

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-------FDDSVLLPPGSILNHALQM 154
              +L    +     V +         H               +             +  
Sbjct: 106 GEFRLIAALEDMPIPVHQFPDDRFLCSHAEFAAWAEGRKELRMEWFYREMRRKTGLLMDG 165

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---- 210
            K           N           P       VT   +             + P     
Sbjct: 166 DKPEGGKWNYDHDNREPPPGSVDAAPMHFTPDDVTEEVLTLVASRFHNNFGTLTPFWFAT 225

Query: 211 ----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                 +   H ++        +             S +S YL+ G+L  R+  +  ++ 
Sbjct: 226 DTGQARRALAHWVKTALPRFGDFQDAMMQGERFLYHSIISMYLNAGLLGWREICDAAEQA 285

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
           + D      +        + WRE+ R +          +  +  T  +           W
Sbjct: 286 YRDGDAPLNAVEGFIRQIIGWREYMRGIYFLEGPDYTSRNTLKHTRDLPGFY-------W 338

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             G T    +  A+ Q     + H+  R++          VD     E++++   D  + 
Sbjct: 339 -SGETDMLCLSEAITQTREEAYAHHIQRLMVTGNFALLAGVDPHQVHEWYLAVYADAYEW 397

Query: 386 --ASN-NGGWQWAASTGNDSVPYF 406
             A N  G  Q+A      S PY 
Sbjct: 398 VEAPNVIGMSQFADGGVVGSKPYV 421


>gi|76802612|ref|YP_327620.1| hypothetical protein NP3956A [Natronomonas pharaonis DSM 2160]
 gi|76558477|emb|CAI50069.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 511

 Score = 38.7 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 46/421 (10%), Positives = 91/421 (21%), Gaps = 57/421 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
            L +   ++D +V+   I      R+      +   +++++   +  L + G    Y + 
Sbjct: 15  PLASDARSTDERVLC--IEARAFARRKPYHPHKLTLVFSAMRHFRDRLREAGYTVDYRRV 72

Query: 85  SNFDD-----------------------SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             F +                       + + L      +  T  F              
Sbjct: 73  ETFAEGLDAHFAAHPEDHIVTVRRTAHGATDRLQRLVANRGGTVEFVADPRFHCSREEFD 132

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                       +       +   +                    +     +      P 
Sbjct: 133 A---WADGDPPYRHESFYRHMRRETGYLMDGDEPVGGEWNFDDENREFPGPEYVPPEPPQ 189

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC-----------------K 224
                            +     D     G                              
Sbjct: 190 FEPDETTREVREWVDATFGEDGYDDAPYGGAWADPEPFSWPVTREGALQALEAFIEERLP 249

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y             + LS  L++G+LSP +        F +  +   S        
Sbjct: 250 TFGPYQDAMLGDEWAMNHALLSSSLNLGLLSPSEVIEAALAAFEEGSVSIASVEGFLRQV 309

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF RH     P +             E+        A          +  A+  + 
Sbjct: 310 LGWREFVRHAYRRTPGMAAANQLGAAEPLPEFFWTGDTDMA---------CVADAVDGVR 360

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T G+ H+  R++  S       V+     E+F +  +D                G     
Sbjct: 361 TRGYAHHIERLMVLSNFATLYGVEPSRLNEWFHAAFVDAYHWVTTPN---VVGMGTFGTD 417

Query: 405 Y 405
            
Sbjct: 418 T 418


>gi|86134107|ref|ZP_01052689.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp.
           MED152]
 gi|85820970|gb|EAQ42117.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp.
           MED152]
          Length = 510

 Score = 38.7 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 72/294 (24%), Gaps = 10/294 (3%)

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
           E+ D   ++ +V    +      +     K  ++ L             +L         
Sbjct: 114 EFCDLLTIESKVYTTEHFYTDRNDLASFFKGKKQFLMESFYRNMRKKHQILMVNEQPEGG 173

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
              Y      +      +  A      V  I               +  +          
Sbjct: 174 KWNYDARNRKKWKGETLIPSAKNFDNDVSEIVTEIEKAGVETIGKINAKYFEYPISRKQA 233

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
                +           Y             S++S  ++  ++SP++        +    
Sbjct: 234 LTQLSYFCGHLLVHFGDYQDAMHTDQVFLFHSKISFAMNTKMISPKEIVETTLATYRKRK 293

Query: 272 IKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
            +             + WRE+ R +          + F+    K+           W  G
Sbjct: 294 DEIDISQVEGFIRQIIGWREYMRGMYWMLMPDYKKENFLNNKNKLPDFF-------W-TG 345

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            T    +  A+      G+ H+  R++          +D    + +++   +D 
Sbjct: 346 KTKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIDPDEIDAWYLGIYVDA 399


>gi|126662377|ref|ZP_01733376.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38]
 gi|126625756|gb|EAZ96445.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38]
          Length = 510

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 82/325 (25%), Gaps = 18/325 (5%)

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVR----RDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
           E L S C +  +     + ++            K  ++ L             +L  G+ 
Sbjct: 110 EQLKSICKKLSIPTKTVDSEHFYTSRNELADFFKGKKQLLMESFYRMMRKKHDVLMVGNQ 169

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
                  +      +      +         V  I               D         
Sbjct: 170 PLDGKWNFDHNNRNQYKNEVPIPFPLEFHKNVSKIITEIKSQNITTFGNIDAENFNWPTS 229

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
                Q   +           Y             S+LS  ++  ++SP++  + +   +
Sbjct: 230 RAESLQLIAYFCEHLLAHFGTYQDSLFSGHKFLFHSRLSFAMNSKMISPKEVVDAVIYYY 289

Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                  +           + WRE+ R +             +     +           
Sbjct: 290 YQNQETIELAQVEGFVRQIIGWREYVRGIYWKEMPNYAQMNVLENYNPLPDFF------- 342

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-- 383
           W  G T    +  ++ Q  +  + H+  R++          +     + +++   +D   
Sbjct: 343 W-TGKTKMKCLQHSISQSLSEAYAHHIQRLMVIGNFSLLAQLHPDEVDAWYLGVYIDAIE 401

Query: 384 --DLASNNGGWQWAASTGNDSVPYF 406
             ++ +  G  Q+A      + PY 
Sbjct: 402 WVEMPNTRGMSQYADGGIVATKPYV 426


>gi|1218028|gb|AAC50396.1| RLF [Homo sapiens]
          Length = 1914

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis]
          Length = 596

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 27/100 (27%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIA---------------TPEQWRQH- 51
           L W++  +R   N AL  A   ++     +  V++                  ++W+   
Sbjct: 39  LYWMQTSVRTKHNYALEYAVAAANKLQLPLHVVYLFPDRSVLPPLPKSEDDHDDEWKAEA 98

Query: 52  --GISA------RQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
               SA      R + F    L    + L+ +G+ F    
Sbjct: 99  RQDASAHAFVTERHARFALEGLADAYERLASRGVSFDVFH 138


>gi|332248570|ref|XP_003273436.1| PREDICTED: zinc finger protein Rlf [Nomascus leucogenys]
          Length = 1885

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 436 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 495

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 496 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 555

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 556 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 615

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 616 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 668

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 669 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 719

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 720 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 775

Query: 389 NGG 391
             G
Sbjct: 776 FLG 778


>gi|297278373|ref|XP_002808256.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein Rlf-like
           [Macaca mulatta]
          Length = 1886

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 436 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 495

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 496 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 555

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 556 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 615

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 616 E--QAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 668

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 669 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 719

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 720 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 775

Query: 389 NGG 391
             G
Sbjct: 776 FLG 778


>gi|219848493|ref|YP_002462926.1| hypothetical protein Cagg_1588 [Chloroflexus aggregans DSM 9485]
 gi|219542752|gb|ACL24490.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 157

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 7   MSVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MS  +VWL  D L  TD  AL A   N    VI  F+      R   +S ++  F+Y   
Sbjct: 1   MSNGIVWLHGDSLSPTD-PALLA---NPATPVI--FVFDEPLLRTMQLSFKRLFFLYEC- 53

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                +L                  +E + ++  +   T + 
Sbjct: 54  -----ALEAIAGR---TGSIRRGVVVEEVRAFAAEYGATVVH 87


>gi|55587020|ref|XP_524678.1| PREDICTED: zinc finger protein Rlf [Pan troglodytes]
          Length = 1914

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|163754254|ref|ZP_02161377.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida
           OT-1]
 gi|161326468|gb|EDP97794.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida
           OT-1]
          Length = 511

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 96/330 (29%), Gaps = 21/330 (6%)

Query: 66  LQVQKSLSQK----GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             + ++L Q      I    +Q  +     E L ++C +  +    ++ ++ +       
Sbjct: 80  QDLVQNLKQLMDEQKIEKFEYQLPDEYRLDEQLKNFCDELSIETEAFDTEHFLTSRTDFT 139

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKALIQNLVQADLRSLPVP 180
              +  +  V+   + D        ++N       K                  +   + 
Sbjct: 140 TFFEGKKQMVMEYFYRDMRKKYDIMMVNDKNPEGGKWNFDQSNRKKWKGSPEIPQEKQLK 199

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      N            +  +P    ++L +L  FC+E + ++ + +D     
Sbjct: 200 NSVEDIYEMIQNAEIETIGNIDVANFHWPTNRADSLKLLDYFCEELLVHFGDYQDAMHTD 259

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHL 294
                 S+LS  ++  +L P++    +   + D                 L WRE+ R +
Sbjct: 260 EHFLFHSRLSFAMNSKMLHPKEVIETVISYWRDHKDAIDISQVEGFVRQILGWREYMRGM 319

Query: 295 MAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+              ++            G T    +  A+ Q     + H+  
Sbjct: 320 YWKEMPNYSTLNTLNNTNSLPDFFW---------TGNTKMNCLKHAISQSLEKAYAHHIQ 370

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           R++          +     + +++   +D 
Sbjct: 371 RLMITGNFALLTQMHPDEVDAWYLGIYIDA 400


>gi|157671949|ref|NP_036553.2| zinc finger protein Rlf [Homo sapiens]
 gi|62296764|sp|Q13129|RLF_HUMAN RecName: Full=Zinc finger protein Rlf; AltName: Full=Rearranged
           L-myc fusion gene protein; AltName: Full=Zn-15-related
           protein
 gi|55666099|emb|CAH71081.1| rearranged L-myc fusion [Homo sapiens]
 gi|55859743|emb|CAI11028.1| rearranged L-myc fusion [Homo sapiens]
 gi|56203755|emb|CAB81608.2| rearranged L-myc fusion [Homo sapiens]
 gi|56205086|emb|CAI21999.1| rearranged L-myc fusion [Homo sapiens]
 gi|109731782|gb|AAI13667.1| Rearranged L-myc fusion [Homo sapiens]
 gi|119627641|gb|EAX07236.1| rearranged L-myc fusion [Homo sapiens]
 gi|313883624|gb|ADR83298.1| rearranged L-myc fusion [synthetic construct]
          Length = 1914

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|298162586|gb|ADI59660.1| cryptochrome [Paralichthys olivaceus]
          Length = 96

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +  A            P    I W+++   L  W +G   FP I A M QL   G + + 
Sbjct: 1   YTDATNNPCFYNMDSTPICVMIPWDRNPKALAKWAEGRRSFPWIHAIMTQLTLDGRIDHL 60

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDL 385
            R   A FL +  L + W+ G + F   LLD D 
Sbjct: 61  ARHAVACFLTRGHLRITWKEGLKVFEELLLDADW 94


>gi|197102200|ref|NP_001125258.1| zinc finger protein Rlf [Pongo abelii]
 gi|55727476|emb|CAH90493.1| hypothetical protein [Pongo abelii]
          Length = 1914

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|302343405|ref|YP_003807934.1| deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
 gi|301640018|gb|ADK85340.1| Deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
          Length = 492

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 114/429 (26%), Gaps = 45/429 (10%)

Query: 11  LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+   R   R   N  L  A   +      + I    +      S R   FI   +  
Sbjct: 25  LYWMCAQR---RTGWNFGLQRAAWLAGELKRPLVILEALRLDYPHASERLHCFILQGMAA 81

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              +L+ +G ++  +           L +   +           + I  +      +   
Sbjct: 82  NAAALAGRGALYYPYVEPARGAGKGLLAALAQRACAVVADDYPTFFIPAMLAAAAAQCAA 141

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +       +     +          +     + L Q  V   L  LP P   L   
Sbjct: 142 RLEAVDSCGLLPLAASDHAFPTAHAFRRFLQKNLPEHLAQPPVADPLAGLPAPPPILPRW 201

Query: 188 VTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +     P +                            G   A   L +F    +  Y + 
Sbjct: 202 IIERWPPAWSADLARPQALIAGLAIDHAVGPVVGRVGGAAAAGATLARFLGRGLALYDQL 261

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---------------EFVDLLIKPKSGA 278
           R+ PA    S LSPYL  G ++  Q +  L +                         +  
Sbjct: 262 RNQPAEDVGSGLSPYLHFGHIAAHQVFAALADVEGWSPQRVGGPAKGARQGWWGLSPTAE 321

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYT 331
                 + WRE   +     P        +P            +     + L+  +   T
Sbjct: 322 AFADQFITWRELGYNFCHHRPGQEGKLESLPDWAGQTLAAHAADPRPYVYDLERLETART 381

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASN 388
              I +AA  QL   G +HN LRM+    ++       +             LDG   ++
Sbjct: 382 HGAIWNAAQNQLRQEGRIHNYLRMLWGKKILHWTETPAQALAIMVHLNDRWALDGRDPNS 441

Query: 389 NGGWQWAAS 397
           + G  W   
Sbjct: 442 HSGIMWCLG 450


>gi|163738168|ref|ZP_02145584.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107]
 gi|161388784|gb|EDQ13137.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107]
          Length = 516

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 99/345 (28%), Gaps = 14/345 (4%)

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEK 125
           ++ ++L Q  +              E L+ +    R+T           +  R      K
Sbjct: 98  ELDRALEQFTVTEVLVTEPGEYRLKEALNRWSGPARLTMLDDSRFLASHDMFRSWAEGRK 157

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +L+     +       L          +        + A     +   +R  P    +  
Sbjct: 158 QLRMEYFYRDMRRKTGLLMQGDSPEGGKWNYDTENRKPAQNDMFMPKPMRCDPDRITQDV 217

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQ 244
             +     P  F         +       AL             Y +   D       S 
Sbjct: 218 LELVEQRFPGNFGRLTPFWFAVTRAAALKALDHFIDVALPLFGDYQDAMLDGEPFLYHSL 277

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS Y++IG+L+P +     +  + +      +        + WRE+ R +          
Sbjct: 278 LSQYINIGLLNPLEVCRSAERAYYEGHAPLNAVEGFIRQIIGWREYMRGIYWLKMPGYTR 337

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +     +           W  G TG   + AA+ Q     + H+  R++        
Sbjct: 338 ENALGAKRDLPDFY-------W-SGETGMACMAAAITQTRDEAYAHHIQRLMVTGNFAML 389

Query: 365 LLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
             ++     E++++   D  +   A N  G  Q+A      S PY
Sbjct: 390 AGINPHQVHEWYLAVYADAYEWVEAPNVIGMSQFADGGLLGSKPY 434


>gi|145224074|ref|YP_001134752.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145216560|gb|ABP45964.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           gilvum PYR-GCK]
          Length = 505

 Score = 38.3 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 82/355 (23%), Gaps = 42/355 (11%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           A       V+   +  P        S     F++         L ++G+V        F 
Sbjct: 88  ALETFKRPVL---VHEP-------TSHAAERFVHR--------LKERGLVADIVPTPTFA 129

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
              +    +  ++        R    +  R  +     L           +         
Sbjct: 130 LPRKDFQDWAGKR-------TRFRMEDFYRDQRRRFDVLMDGNEPVGNRWNYDEDNREPP 182

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                   V                         R+   +   ++        +      
Sbjct: 183 PKKQTTLDV------------PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTP 230

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              ++     +         Y             S LS  L++GVL P       +  + 
Sbjct: 231 AEAKRALTRFIEHRLPHFGRYEDAMMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYR 290

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           D      +        L WRE+  HL   +      K  +     +          A   
Sbjct: 291 DKQAPLAAVEGFIRQILGWREYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADA--- 347

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                  +  A++ +   GW H+  R++                 E+F +  +DG
Sbjct: 348 --VTAQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 400


>gi|332292003|ref|YP_004430612.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170089|gb|AEE19344.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 511

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 103/358 (28%), Gaps = 24/358 (6%)

Query: 63  ASL-LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-- 119
            SL   +++ + +  I    +Q  +     E L  +     +    Y+ ++ +       
Sbjct: 80  QSLIKNIEQLIKENDISLFEYQLPDEYRLDEMLSRFRESVTIEVKSYDTEHFMTSRTDLS 139

Query: 120 -DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                +K        +       +   +  +     +      R     + +    ++  
Sbjct: 140 SFFEGKKLFTMEYFYRMMRKKYDVMMINDKDPEGGKWNFDHSNRNKWKGDTLIPIEKTFD 199

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                +   +  + +        +     +P   + +L +L  FC+  + ++ + +D   
Sbjct: 200 TNVSSIVKLIEKAGVKTIGRIDEKNFA--WPTNRKESLEVLDYFCEHLLVHFGDYQDAMD 257

Query: 239 IQGTSQLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYR 292
                     LS  + S    P++    +   +     +             L WRE+ R
Sbjct: 258 PDQAYLYHSRLSFAMNSKILDPQEVIETVINYWRAHKEEINISQIEGFVRQILGWREYMR 317

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +             +     +           W  G T    +  ++       + H+ 
Sbjct: 318 GMYWKEMPTFATTNHLENKNPLPEFY-------W-TGKTKMNCLKCSINNSLDNAYAHHI 369

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
            R++         + D    +E+++   +D     ++ +  G  QWA      + PY 
Sbjct: 370 QRLMITGNYALLTMCDPAQVDEWYLGIYIDAIEWVEITNTRGMSQWADGGKIATKPYI 427


>gi|296207607|ref|XP_002807038.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein Rlf-like
           [Callithrix jacchus]
          Length = 1913

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAISEQNHSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 E--QAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|315444411|ref|YP_004077290.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           Spyr1]
 gi|315262714|gb|ADT99455.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           Spyr1]
          Length = 505

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 82/355 (23%), Gaps = 42/355 (11%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           A       V+   +  P        S     F++         L ++G+V        F 
Sbjct: 88  ALETFKRPVL---VHEP-------TSHAAERFVHR--------LKERGLVADIVPTPTFA 129

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
              +    +  ++        R    +  R  +     L           +         
Sbjct: 130 LPRKDFQDWAGKR-------TRFRMEDFYRDQRRRFDVLMDGNEPVGNRWNYDEDNREPP 182

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                   V                         R+   +   ++        +      
Sbjct: 183 PKKQTTLDV------------PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTP 230

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              ++     +         Y             S LS  L++GVL P       +  + 
Sbjct: 231 AEAKRALTRFIEHRLPHFGRYEDAIMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYR 290

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           D      +        L WRE+  HL   +      K  +     +          A   
Sbjct: 291 DKQAPLAAVEGFIRQILGWREYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADA--- 347

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                  +  A++ +   GW H+  R++                 E+F +  +DG
Sbjct: 348 --VTAQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 400


>gi|172087496|ref|XP_001913290.1| QI74 protein-like protein [Oikopleura dioica]
 gi|42601418|gb|AAS21442.1| QI74 protein-like protein [Oikopleura dioica]
          Length = 1072

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/225 (6%), Positives = 38/225 (16%), Gaps = 4/225 (1%)

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
            F+N    +                      +           +      K       + 
Sbjct: 455 YFWNGIICVKCSEGYDEDGCIYCEDGSVWDPEAEECQECPEYWDPVYNECKSCKEMYGSE 514

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
                 A+          L                          G +   +   K    
Sbjct: 515 SYWDPIAEKCVFCPINHELNYETGECKRCEEGWNDSTRRCLYCNDGYEWNGYGCVK---C 571

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              +    RD        + +P  ++      + W+ L            +        +
Sbjct: 572 PEGWDPITRDCVYCDPYEEWNP-TNMLCQPCPEDWDELYGCVPCPDNSFWNPETLECEVI 630

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +       V   + +      +   +D       ++  
Sbjct: 631 NTDCGEGYEWNGVECVPCPEDWNSIDGCVPCQEDYPWNPIIQECQ 675


>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 532

 Score = 37.9 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATP------EQWRQHGIS-----AR 56
           L W++  +R T N +L  A   + A  +    ++  +       EQ  +   +      R
Sbjct: 40  LYWMQTSVRTTHNYSLEYAIEAATALSLPLQVIYFFSDRSSVPEEQLSRDPNAFAFSTER 99

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYH 82
            + F    L   +  L ++GI F+  
Sbjct: 100 HAKFALEGLASTKMRLKERGIDFKII 125


>gi|309362083|emb|CAP28760.2| CBR-NPP-10 protein [Caenorhabditis briggsae AF16]
          Length = 1684

 Score = 37.9 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 28/141 (19%), Gaps = 6/141 (4%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
                R     +  +  +  +         +      G+   RQ  N  +  +       
Sbjct: 377 YKQCFRPTRWYRRKFIRKHSNEYHWWFLVWIKTSHKHGIQLWRQSTNYYECIWFHEQHWW 436

Query: 275 K--SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW----KQ 328
                            +Y H   +   +               N  +     W    +Q
Sbjct: 437 WSFRKQCCQARRPFRFNYYWHYWRWSFRLATSSHIGRTFRFKRPNHAAIKHWIWKFVVQQ 496

Query: 329 GYTGFPIIDAAMRQLNTIGWM 349
                P+I      L     M
Sbjct: 497 QVAPIPVIGVTADVLQMQANM 517


>gi|223940885|ref|ZP_03632710.1| oxidoreductase domain protein [bacterium Ellin514]
 gi|223890450|gb|EEF56986.1| oxidoreductase domain protein [bacterium Ellin514]
          Length = 437

 Score = 37.9 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 40/149 (26%)

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           +P +   + S  +   +          +   G    +  +   E       +        
Sbjct: 158 APGVRSVLASAEEARKKKLSLLSGFCYRYSKGERELVKRIHDGEIGDVTSIYNSYNTSPV 217

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P  E     +       +    +G  I++ A+  +N + W+ N +  + A  +    
Sbjct: 218 WCHPRQEGWTDMQAQMRNWYYYTWLSGDHIVEQAIHNINKMAWVMNDVAPVKAIAVGGRQ 277

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           +         +    +  D  +   G   
Sbjct: 278 VRTQPEFGHIYDHFAVVYDYPNGVKGIHM 306


>gi|111222316|ref|YP_713110.1| putative deoxyribodipyrimidine photolyase-like protein [Frankia
           alni ACN14a]
 gi|111149848|emb|CAJ61542.1| conserved hypothetical protein; putative deoxyribodipyrimidine
           photolyase-related protein [Frankia alni ACN14a]
          Length = 516

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 9/173 (5%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 S LSP L++G+L P +     ++ +        S        L WRE+   +  
Sbjct: 268 DWAMAHSTLSPALNLGLLHPLEVVAAAEQAYRRGEAPIASVEGFVRQVLGWREYVWGIYW 327

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +       +  +     +    D     A      G   +   +  +   GW+H+  R++
Sbjct: 328 WAGEDYADRNALGARTPLPRWFDDLDADA-----VGAACLSDVLAGVRERGWVHHIPRLM 382

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGD---LASN-NGGWQWAASTGNDSVPY 405
                      D R   ++F    +DG    +A N  G  Q+A      + PY
Sbjct: 383 VLGNWALQRGYDPRALTDFFHESFVDGYAWVMAPNVVGMSQYADGGLMATKPY 435


>gi|33864759|ref|NP_896318.1| hypothetical protein SYNW0223 [Synechococcus sp. WH 8102]
 gi|33632282|emb|CAE06738.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 145

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 28/93 (30%)

Query: 7  MSVH--LVWLRNDLRITD------NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
          M++   ++W      I D      N AL A     DA   A+F+   +  +   IS ++ 
Sbjct: 1  MTMQRPILW------IHDEALGPANPALRA---WPDAP--ALFVFDTQWIQASRISRKRL 49

Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           F+Y + L++              +     + +
Sbjct: 50 GFLYEAALEL---------PLTLRKGDVAAEVL 73


>gi|163743762|ref|ZP_02151135.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382911|gb|EDQ07307.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 516

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 100/345 (28%), Gaps = 14/345 (4%)

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEK 125
           ++ ++L Q  +              E L+ +    R+T           +  R      K
Sbjct: 98  ELDRALEQFTVTEVLVTEPGEYRLKEALNRWSGPARLTMLDDSRFLASHDMFRSWAEGRK 157

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +L+     +       L          +        + A     +   +R  P    +  
Sbjct: 158 QLRMEYFYRDMRRKTGLLMQGDSPEGGKWNYDTENRKPAQNDMFMPKPMRCDPDRITQDV 217

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQ 244
             +     PR F         +       AL             Y +   D       S 
Sbjct: 218 LELVEQRFPRNFGRLTPFWFAVTRAAALKALDHFIDVALPLFGDYQDAMLDGEPFLYHSL 277

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS Y++IG+L+P +     +  + +      +        + WRE+ R +          
Sbjct: 278 LSQYINIGLLNPLEVCRSAERAYYEGHAPLNAVEGFIRQIIGWREYMRGIYWLKMPGYTR 337

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +     +           W  G TG   + AA+ Q     + H+  R++        
Sbjct: 338 ENALGARRDLPDFY-------W-SGETGMACMAAAITQTRDEAYAHHIQRLMVTGNFAML 389

Query: 365 LLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405
             ++     E++++   D  +   A N  G  Q+A      S PY
Sbjct: 390 AGINPHQVHEWYLAVYADAYEWVEAPNVIGMSQFADGGLLGSKPY 434


>gi|114768847|ref|ZP_01446473.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255]
 gi|114549764|gb|EAU52645.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255]
          Length = 511

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 81/300 (27%), Gaps = 9/300 (3%)

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
           + + +EW +   +   +                    ++               +L  G 
Sbjct: 109 YLEMLEWENKLNIPVEIRDDDRFLCSTDEFNTWASDRKQLRMEYFYRNMRRKYDILMEGD 168

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
                   +            ++ ++         + +   V  S    F D        
Sbjct: 169 EPIGGQWNFDSENRKPPKNGLDVPKSYSTQPDKITMEVINLVEKSFNDHFGDLKPFNFAV 228

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                       + K       +     +       S +S YL+ G+L+P +C   ++  
Sbjct: 229 TRQQALVVLDEFIDKRLSMFGDFQDAMIEGEPWMFHSHISFYLNCGLLTPLECIKAVERA 288

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
           + D      +        L WRE+ R +  +       + F+    K+           W
Sbjct: 289 YYDNRAPLNAVEGFIRQVLGWREYIRGVYWYKMPTYKSENFLEAHRKLPEFY-------W 341

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             G T    +   + +     + H+  R++     V    ++     E+++S   D  + 
Sbjct: 342 -TGQTDMNCLKQCINETKENSYAHHIQRLMVLGNFVLLAGINPDDVHEWYLSVYSDAYEW 400


>gi|313215511|emb|CBY16220.1| unnamed protein product [Oikopleura dioica]
          Length = 721

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/225 (6%), Positives = 39/225 (17%), Gaps = 4/225 (1%)

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
            F+N    +                      +           +      K+      + 
Sbjct: 104 YFWNGIICVKCSEGYDEDGCIYCEDGSVWDPESEECQECPEYWDPVYNECKLCKEMYGSE 163

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
                 A+          L                          G +   +   K    
Sbjct: 164 SYWDPIAEKCVFCPINHELNYETGECKRCEEGWNDSTRRCLYCNDGYEWNGYGCVK---C 220

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              +    RD        + +P  ++      + W+ L            +        +
Sbjct: 221 PEGWDPITRDCVYCDPYEEWNP-TNMLCQPCPEDWDELYGCVPCPDNSFWNPETLECEVI 279

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +       V   + +      +   +D       ++  
Sbjct: 280 NTDCGEGYEWNGVECVPCPEDWNSIDGCVPCQEDYPWNPIIQECQ 324


>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
 gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
          Length = 215

 Score = 37.9 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/214 (6%), Positives = 33/214 (15%), Gaps = 8/214 (3%)

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
                      L         I   +     L     +   +  +               
Sbjct: 4   CIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFT 63

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                      +                + +      +  G    +H          + +
Sbjct: 64  CIHWWWWIFTCLH----WCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCW 119

Query: 231 VEQRDIPAIQGTSQLSPYLS----IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
                I           + S      +L+   CW           I      + W+   +
Sbjct: 120 GIFTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCL 179

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
              +       +           W      +   
Sbjct: 180 HWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCW 213



 Score = 36.7 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 8/210 (3%), Positives = 22/210 (10%), Gaps = 2/210 (0%)

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
                +F    +                    C      +                    
Sbjct: 6   YWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCI 65

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                I   +                          F            +     +    
Sbjct: 66  HWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCI 125

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +                    +    +     +    CW           I        
Sbjct: 126 HWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHW--CWGIFTCIHWWWWIFTCLHWCW 183

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            +   +   +       +           W
Sbjct: 184 GIFTCVHWCWGIFTCIHWWWWIFTCLHWCW 213


>gi|110800016|ref|YP_695059.1| cell wall binding repeat-containing protein/zinc carboxypeptidase
           family protein [Clostridium perfringens ATCC 13124]
 gi|168211909|ref|ZP_02637534.1| cell wall binding repeat protein/zinc carboxypeptidase family
           [Clostridium perfringens B str. ATCC 3626]
 gi|110674663|gb|ABG83650.1| cell wall binding repeat protein/zinc carboxypeptidase family
           [Clostridium perfringens ATCC 13124]
 gi|170710143|gb|EDT22325.1| cell wall binding repeat protein/zinc carboxypeptidase family
           [Clostridium perfringens B str. ATCC 3626]
          Length = 550

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%)

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             + +S             + Y+        +    +              TG    +N 
Sbjct: 67  WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
             +F+   +       IG +                    R + +          +  G 
Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
                 W  L+++              +                     + +     T  
Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            + N D +      +  T +  ID +    N  G M         S          +   
Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGEKESN 299

Query: 374 EYFMSQLLD 382
           +      LD
Sbjct: 300 KVIDDWYLD 308


>gi|88802283|ref|ZP_01117810.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter
           irgensii 23-P]
 gi|88781141|gb|EAR12319.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter
           irgensii 23-P]
          Length = 510

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 81/296 (27%), Gaps = 14/296 (4%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L S+C   ++    Y+ ++   E        K  +  ++   + +        +++   +
Sbjct: 112 LGSFCAALKIDASVYSTEHFYTEREDLTAFFKGKKQFLMEHFYRNMRKKHQILMIDKQPE 171

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
             K                    +                              +PI   
Sbjct: 172 GGKWNYDASNRKKWKGEALIPPEITFDTDVTALFSEIEKAGIKTIGKINPSFFEYPISRL 231

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS----PRQCWNRLKEEFVD 269
            A+  L  FC   + ++ + +D             +S  + S    P++  + + E + +
Sbjct: 232 QAMEQLAYFCDHLLVHFGDYQDAMHTDKIYLFHSRISFAMNSKIIAPKEVVDAVLETYRE 291

Query: 270 LLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                            L WRE+ R +          + F+    K+           W 
Sbjct: 292 QEDAIDISQVEGFIRQILGWREYMRGMYWMLMPNYKKENFLENKNKLPAFF-------W- 343

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            G T    +  A+      G+ H+  R++          +     + +++   +D 
Sbjct: 344 TGATKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIHPDAIDAWYLGIYVDA 399


>gi|293359508|ref|XP_233485.5| PREDICTED: rearranged L-myc fusion [Rattus norvegicus]
          Length = 1851

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91
             PE W    +       +          LS   +              Y +        
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             L     ++R  K   + +     ++         +  +  +    S +     +    
Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584

Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
           + + K      F   +++++     RS       L         P+      +    +  
Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             +            +     ++ RD+    GT     +     LS       LK E  +
Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K            RE   +             F     +         +      
Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           Y  F  ++    +L      H+ LR          +  D      +      D     N 
Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804

Query: 390 GG 391
            G
Sbjct: 805 LG 806


>gi|293347618|ref|XP_002726682.1| PREDICTED: rearranged L-myc fusion isoform 2 [Rattus norvegicus]
          Length = 1919

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91
             PE W    +       +          LS   +              Y +        
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             L     ++R  K   + +     ++         +  +  +    S +     +    
Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584

Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
           + + K      F   +++++     RS       L         P+      +    +  
Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             +            +     ++ RD+    GT     +     LS       LK E  +
Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K            RE   +             F     +         +      
Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           Y  F  ++    +L      H+ LR          +  D      +      D     N 
Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804

Query: 390 GG 391
            G
Sbjct: 805 LG 806


>gi|149023860|gb|EDL80357.1| rearranged L-myc fusion sequence (predicted) [Rattus norvegicus]
          Length = 1703

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91
             PE W    +       +          LS   +              Y +        
Sbjct: 249 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 308

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             L     ++R  K   + +     ++         +  +  +    S +     +    
Sbjct: 309 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 368

Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
           + + K      F   +++++     RS       L         P+      +    +  
Sbjct: 369 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 428

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             +            +     ++ RD+    GT     +     LS       LK E  +
Sbjct: 429 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 481

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K            RE   +             F     +         +      
Sbjct: 482 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 532

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           Y  F  ++    +L      H+ LR          +  D      +      D     N 
Sbjct: 533 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 588

Query: 390 GG 391
            G
Sbjct: 589 LG 590


>gi|169342331|ref|ZP_02863401.1| cell wall binding repeat protein/zinc carboxypeptidase family
           [Clostridium perfringens C str. JGS1495]
 gi|169299556|gb|EDS81619.1| cell wall binding repeat protein/zinc carboxypeptidase family
           [Clostridium perfringens C str. JGS1495]
          Length = 550

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%)

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             + +S             + Y+        +    +              TG    +N 
Sbjct: 67  WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
             +F+   +       IG +                    R + +          +  G 
Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
                 W  L+++              +                     + +     T  
Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            + N D +      +  T +  ID +    N  G M         S          +   
Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGEKESN 299

Query: 374 EYFMSQLLD 382
           +      LD
Sbjct: 300 KVIDDWYLD 308


>gi|109477162|ref|XP_001054292.1| PREDICTED: rearranged L-myc fusion isoform 1 [Rattus norvegicus]
          Length = 1907

 Score = 37.5 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91
             PE W    +       +          LS   +              Y +        
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             L     ++R  K   + +     ++         +  +  +    S +     +    
Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584

Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
           + + K      F   +++++     RS       L         P+      +    +  
Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             +            +     ++ RD+    GT     +     LS       LK E  +
Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K            RE   +             F     +         +      
Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           Y  F  ++    +L      H+ LR          +  D      +      D     N 
Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804

Query: 390 GG 391
            G
Sbjct: 805 LG 806


>gi|154415097|ref|XP_001580574.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914793|gb|EAY19588.1| hypothetical protein TVAG_228510 [Trichomonas vaginalis G3]
          Length = 1230

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 38/424 (8%), Positives = 100/424 (23%), Gaps = 51/424 (12%)

Query: 39  AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
            +FI          +      F Y+SL +V ++  +      + +    ++    ++ + 
Sbjct: 551 CIFILFITLMLDPFV---VYWFRYSSLKEVSEACEKYFRPKVFEEGCEIEEFSNEVEEFS 607

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH-------- 150
           L   + K+ ++    I       +  + +           + ++    +           
Sbjct: 608 LSSLIRKISWSVGVMIVYCVGMTICWELIFDYYYEAFAIHNTIIGIQRMQLQAAITLSSV 667

Query: 151 ---ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
                +         +  IQ                +  P   +     F  P + I   
Sbjct: 668 GLAWKKDVNTCRQSIQEAIQYFDDIQNYCTQFNRTYINAPQIYNATHTIFKGPKENISFH 727

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS-PRQCWNRLKEE 266
                  +L  L +      ++                         +     W  L + 
Sbjct: 728 D-YYNTGSLGALHRIIAYITHHISMNISTLVSDPAKNAVHIYFQRTYTKSLIIWAYLYDR 786

Query: 267 FVDLLIKPKSGAFSWLNELIWR----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + L++        +   +       F              +      +        + 
Sbjct: 787 MNEKLVQMDCICNFAIFSFVVAILILPFVFWSRYVKTDSLKMQLGRLILDLDPIFITKNQ 846

Query: 323 L------------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                          W+ G   F I+++       I   HN +   +            +
Sbjct: 847 CLVEYIIGSKTGVLPWENGSPIFDILNSTNTPFIIIN-DHNSILAFSRCISEMFSYQPEQ 905

Query: 371 IGEEYFMSQLLD-GDLASNNGGW-------QWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           +  +++    +  G+  S    +           S+G  S     I N          +G
Sbjct: 906 LIGQHYTMLFMSKGEPPSKAHEFFFSRISDLLTMSSGCTSK----IINGVT------SEG 955

Query: 423 TFIR 426
            +I+
Sbjct: 956 VYIK 959


>gi|92113024|ref|YP_572952.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796114|gb|ABE58253.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 524

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 94/363 (25%), Gaps = 42/363 (11%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQ 111
            ++   + A++      L Q+G    Y    + D+    +        +Q   ++   R 
Sbjct: 45  PQKIAMMLAAMRHFAAELRQRGYRVHYSTLDDPDNRHSLIAEAERLAKRQGCDEIHVTRP 104

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170
            E   ++  +  + + +        D                  +        +++    
Sbjct: 105 GEWRLLKAMEARQAQDRTPRWRIVEDTRFFCSHRDFDAWMEGRKRPRMEDFYRMLRRRTG 164

Query: 171 -----QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
                 A +            P+  +  P       Q       +              E
Sbjct: 165 LLMDGNAPVGGQWNFDRDNRAPIDDAPSPPSPPRHRQDAVTREVLALVEKRFADHVGRLE 224

Query: 226 KVYYYVEQR-------------------------DIPAIQGTSQLSPYLSIGVLSPRQCW 260
              + V +R                         D       S+LS  L+IG+LSP +  
Sbjct: 225 GFNWPVTRRQALADLRHFVARALPAFGTYQDAISDTAPYLFHSRLSAALNIGLLSPGEVC 284

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
              ++ +        +        L WRE+ R +          +  +  T  +      
Sbjct: 285 EAAQDAWQGGEAPLNAVEGFIRQILGWREYVRGIYWHRMPAYKRENQLGATRGLPRCY-- 342

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                W  G T    +  A+   +   + H+  R++          V      +++++  
Sbjct: 343 -----W-DGDTDLRCLQRAIEMTHDNAYAHHIQRLMVTGNFALLCDVRPAALCDWYLAVY 396

Query: 381 LDG 383
            D 
Sbjct: 397 ADA 399


>gi|269961333|ref|ZP_06175698.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833884|gb|EEZ87978.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 514

 Score = 37.5 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 84/318 (26%), Gaps = 26/318 (8%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +C + +  +   +    Q    K      +     +R  +    L
Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +      + L                 ++ +++   +        L G 
Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIIERLAKHDIKTIGNLEGD 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +                             +              Q D       S++S 
Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305
            L+  +L PR+  +   + F        S    ++ + L WRE+ R    A  P      
Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +  ++  +     A          +  A+ Q     + H+  R++         
Sbjct: 335 ELDAERKLPDFFWNGETKMA---------CMRNAIEQSLDYAYAHHIQRLMVTGNFCLLT 385

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +D    +E+++   +D 
Sbjct: 386 EIDPDQVDEWYLGIYVDA 403


>gi|293340738|ref|XP_002724748.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus
           norvegicus]
 gi|293352105|ref|XP_002727920.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus
           norvegicus]
          Length = 645

 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/306 (6%), Positives = 66/306 (21%), Gaps = 13/306 (4%)

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           +   T+ +    +    +   +          I  +   +  +    I N+    +    
Sbjct: 31  EYGATRKWSTGIWNTWNMEPLEYGALEYGTTGIWNTGIWNTRIWNTRIWNYWNMEHWSME 90

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
            +    ++           +    +             +Y    I   + +   N  H  
Sbjct: 91  HWNMEPLEYGATGIWSHWNMEHWNIEHWNMEPLENGALEYGTTGIWNHWNMEHWNMEHWN 150

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            +  +     Y                  L  G       WN          ++  S   
Sbjct: 151 MEPLEYGTLEYGTTGVWNTGIWNHWSMEPLEYGTTGVWNHWNMEHWNMEHWSMEHWSMEH 210

Query: 280 SWLNELIWREFYRHLMAFYPS------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             +  L +                         +    +      +   ++  + G   +
Sbjct: 211 WNMEPLEYGTTGIWSHWNMEPLEYGALEYRTLEYGATRKWSTGIWNHWNMEPLEYGALEY 270

Query: 334 PIIDAAMRQLNTIGWMHNRLRM-------ITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
             ++    +  T+ +    +         +  + +     ++    E + M        +
Sbjct: 271 GTLEYGTLEYGTLEYGTTGVWNTGVWNTGVWNTGIWNHWSMEHWSMEHWSMEHWSMEHWS 330

Query: 387 SNNGGW 392
               GW
Sbjct: 331 LFLWGW 336


>gi|62087778|dbj|BAD92336.1| rearranged L-myc fusion sequence variant [Homo sapiens]
          Length = 1608

 Score = 37.5 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+  E     
Sbjct: 159 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 218

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     I   
Sbjct: 219 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 278

Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K          +++++     R        L         P+      +    + 
Sbjct: 279 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 338

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              +            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 339 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 391

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 392 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 442

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 443 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 498

Query: 389 NGG 391
             G
Sbjct: 499 FLG 501


>gi|194753570|ref|XP_001959085.1| GF12236 [Drosophila ananassae]
 gi|190620383|gb|EDV35907.1| GF12236 [Drosophila ananassae]
          Length = 1431

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 77/308 (25%), Gaps = 18/308 (5%)

Query: 42  IATPEQWRQHGISARQSHFIYASLLQVQKS------------LSQKGIVFQYHQCSNFD- 88
           I                 FI  SL ++               L       Q    +    
Sbjct: 197 IVDYRVPDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNDERQRLGLNAVGI 256

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           D++E L     ++   +   N      EV  D +    L     C++ +  +     ++ 
Sbjct: 257 DTMELLMDRLEKESHFQAAANGTPTGVEVDDDAVCCICL--DGECQNTNVILFCDMCNLA 314

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            H       Y P  + L +  +Q+  + +    +                +         
Sbjct: 315 VHQDCYGVPYIPEGQWLCRRCLQSPSKPVNC--VLCPNAGGAFKQTDHGQWAHVVCALWI 372

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           P         L      +       R    +     L   +     S    ++    +  
Sbjct: 373 PEVRFANTVFLEPIDSIETIPAARWRLTCYVCKEKGLGACIQCHRNSCYAAFHVTCAQQA 432

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            L +   +      +  +  + + +  A  P+    K  +P  E           +A  +
Sbjct: 433 GLYMTMDTIKDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDFEDTRHKMR-EARKALAK 491

Query: 329 GYTGFPII 336
             +  P++
Sbjct: 492 KRSTAPVV 499


>gi|260833176|ref|XP_002611533.1| hypothetical protein BRAFLDRAFT_63830 [Branchiostoma floridae]
 gi|229296904|gb|EEN67543.1| hypothetical protein BRAFLDRAFT_63830 [Branchiostoma floridae]
          Length = 1310

 Score = 37.1 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/265 (6%), Positives = 47/265 (17%), Gaps = 1/265 (0%)

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            Y     R       + +   +                     ++  +   R     +  
Sbjct: 694 WYFQKYRRAAVWYFHKYRRAAVWYFHKYRRAAAWYFHKYRRAAVWYFHKYRRAVWYFHKY 753

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +           R             + +        +    + A        +  V+Y+
Sbjct: 754 RRAAVWYFHKYRRAAVWYFHKYRRAAWYFHKYRRAAWYFHKYRRAAVWYFHKYRRAVWYF 813

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + R              +       R       +    +    K    +      +R  
Sbjct: 814 HKYRRAAVWYFHKYRRAAVWYFHKYKRAAVWYFHKYRRAVWYFHKYRRAAVWYFHKYRRA 873

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                  Y    +          + +         W         +    +      W  
Sbjct: 874 AVWYFHKYRRAAVWYFHKYRRAAVWYFHKYKRAAVWYFHKYRRAAVWYFHKY-RRAAWYF 932

Query: 351 NRLRMITASFLVKDLLVDWRIGEEY 375
           ++ R     +  K          +Y
Sbjct: 933 HKYRRAAVWYFHKYRRAAVWYFHKY 957


>gi|254413184|ref|ZP_05026955.1| glycosyl transferase, group 1 family protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179804|gb|EDX74797.1| glycosyl transferase, group 1 family protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 1239

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 26/356 (7%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF-DDSIEWLDSYC 98
           ++            S R+   I+       +++ + G+         F    ++      
Sbjct: 295 IYCIDTWDGNDSDFSDRKFFEIWQ------QNIKKNGVDQYVVPVQGFSHQILKRWHELT 348

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
             + V  +F +  ++  ++ +D  L   L       +F D +   PGS            
Sbjct: 349 NTREVDFIFIDGSHQYLDLLQDFQLSFPLVRNGGWIAFYDVIHTWPGSEKVWHKIAKYYL 408

Query: 159 TPFRK----ALIQN-----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                    A  +      +    L       +    P    +I  F   PF     +  
Sbjct: 409 VSHEYSSSLACGKKDNSLVIASFQLPIHFFTIVLNGEPFIRYHIEVFKQLPFPWHWHIVE 468

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
                                   R+  +  GT+     L+         + + +  F D
Sbjct: 469 GVADLKHDTAWSSALGGHISDEIHRNGYSKDGTTDYLDELAREYPDNVTVYRKPEGIFWD 528

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             ++  +   +        E           +   +           N +      W   
Sbjct: 529 GKLEMVNAPLA-----NIHEECLLWQIDVDELWTVEQLCTGRHLFISNPEKTAGFYWCWY 583

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           + G  ++ +         +  N  +    +++ K  ++         +  L D   
Sbjct: 584 FVGENLVIS-----TRNCYAQNPQQDWLRTWIFKPGMMWAAHEPPVLIEPLPDNQW 634


>gi|254227924|ref|ZP_04921354.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25]
 gi|262396093|ref|YP_003287946.1| DNA photolyase [Vibrio sp. Ex25]
 gi|151939420|gb|EDN58248.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25]
 gi|262339687|gb|ACY53481.1| DNA photolyase [Vibrio sp. Ex25]
          Length = 514

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 86/317 (27%), Gaps = 24/317 (7%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +  + +  +   +    Q    K      +     +R  +    L
Sbjct: 110 LLEQLAKLKLDGVVMRSVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFNI----L 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +      + L                 + ++V+   R       +L G 
Sbjct: 166 MQDGKPIGGKWNYDANNRNKLKAKDIEQLPKPLMFSHDVSDIVERLGRHNIQTIGKLNGD 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +                  +           +    + K   Y  +              
Sbjct: 226 LLWPVNRSQSLSLLAHFCQVCLPLFGRFQDAMTGQHEAKWSLYHSRISFS---------- 275

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKP 306
            L+  +L+PR+  +   + F        S    ++ + L WRE+ R +          K 
Sbjct: 276 -LNSKLLNPREVIDASLKAFHANADIDISQVEGFIRQILGWREYIRGVYWANMPHYPNKN 334

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            +  + K+           W  G T    +  A+ Q     + H+  R++          
Sbjct: 335 ELEASRKLPDFF-------W-NGETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTE 386

Query: 367 VDWRIGEEYFMSQLLDG 383
           +D    +E+++   +D 
Sbjct: 387 IDPDQVDEWYLGIYVDA 403


>gi|91224259|ref|ZP_01259522.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01]
 gi|91191170|gb|EAS77436.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01]
          Length = 514

 Score = 37.1 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 99/318 (31%), Gaps = 26/318 (8%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +C + +  +   +    Q    K      +     +R  +L +  
Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDILMQDG 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +      ++D +      +     L    +++     +I+ L + D++++      L  P
Sbjct: 170 KPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDIHGIIERLARHDIKTIGNLEGDLLWP 229

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +  +       +  Q   P                          Q D       S++S 
Sbjct: 230 INRAQSLSLLAHFCQVCLP---------------LFGRFQDAMTGQHDAKWSLYHSRISF 274

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305
            L+  +L PR+  +   + F        S    ++ + L WRE+ R    A  P      
Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKNN 334

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +  ++  +     A          +  A+ Q     + H+  R++         
Sbjct: 335 ELGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +D    +E+++   +D 
Sbjct: 386 EIDPDQVDEWYLGIYVDA 403


>gi|156977900|ref|YP_001448806.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116]
 gi|156529494|gb|ABU74579.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116]
          Length = 514

 Score = 37.1 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 84/318 (26%), Gaps = 26/318 (8%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +C + +  +   +    Q    K      +     +R  +    L
Sbjct: 110 LLEQLAKLKLDGVVARCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +      + L                 ++++ +   R        L G 
Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKVKDIEQLPQPLMFSTDVRDITERLARHDIKTIGNLEGD 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +                             +              Q D       S++S 
Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305
            L+  +L PR+  +   + F        S    ++ + L WRE+ R    A  P      
Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +  ++  +     A          +  A+ Q     + H+  R++         
Sbjct: 335 KLGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +D    +E+++   +D 
Sbjct: 386 EIDPDQVDEWYLGIYVDA 403


>gi|291399182|ref|XP_002715235.1| PREDICTED: rearranged L-myc fusion [Oryctolagus cuniculus]
          Length = 1915

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 84/363 (23%), Gaps = 34/363 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++D+S E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDESKEDKQYR 524

Query: 93  --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
              L     ++R  K   + +     ++         +  +  +    S +     +   
Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTC 584

Query: 151 ALQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            + + K      F   +++++     R        L         P+      +    + 
Sbjct: 585 PVCIKKFKRKEIFVPHVMEHVKMPPSRRDRSRKKLLLKSSQKGVCPKSPSATLEQNQSLN 644

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
              E            +    +++ RD+    GT     +     LS       LK E  
Sbjct: 645 E--ETKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     K            RE   +             F     +         +     
Sbjct: 698 NNDENAKHYLAMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
            Y  F  ++    +L      H+ LR          +  D      +      D     N
Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNVVFSDLGQLYHHEAQHFRDASYTCN 804

Query: 389 NGG 391
             G
Sbjct: 805 FLG 807


>gi|52840460|ref|YP_094259.1| hypothetical protein lpg0205 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627571|gb|AAU26312.1| hypothetical protein lpg0205 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 512

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 106/395 (26%), Gaps = 47/395 (11%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY----- 81
            AA +     V    +A    +  H    ++  F+++S+    + L +KG   +Y     
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSSMRHFAQQLKKKGYRVRYTTFDD 76

Query: 82  ------------------------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
                                            ++       Q  +    +     + ++
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHGLKSQLTIPVTLHEDNRFLCKI 136

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQA 172
              +   K  +   +   +                       Y          I +  + 
Sbjct: 137 NEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNNGKPVGGTWNYDAQNRKNANHISSFPKR 196

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +  V    + G V+      F       +        + A + +  F      Y   
Sbjct: 197 LEHTRDVITDEVLGLVSARFAKHFGQCYPFNLAVTREQALEEANYFMEHFLCNFGAYQDA 256

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                     S+LS YL+ G+L P +     ++ +    +   S        L WRE+ R
Sbjct: 257 MLKDEISLYHSKLSVYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVR 316

Query: 293 HLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +   F P       F        +              TG   I   +RQ +T  + H+
Sbjct: 317 GIYWLFMPDYGEMNYFNACRPLPSFFWGEE---------TGMFCIKEVVRQTSTEAYSHH 367

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             R++          +D +   E++++   D  + 
Sbjct: 368 IQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEW 402


>gi|220909346|ref|YP_002484657.1| deoxyribodipyrimidine photolyase-like protein [Cyanothece sp. PCC
           7425]
 gi|219865957|gb|ACL46296.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7425]
          Length = 507

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 96/326 (29%), Gaps = 15/326 (4%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK------ 121
           +   + Q GI             ++ + +  L   VT    NR    ++   D       
Sbjct: 83  LHNWIEQHGITELRLMTPTDRPLLKLIHTLKLPCTVTFTPNNRFIWQDQDFIDWARSRKR 142

Query: 122 -LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            ++E   +      +      LP G   N      K              + D  +  V 
Sbjct: 143 LVMEDFYREGRQRFNILMEGNLPVGGRWNFDRDNRKPPKGKLSLPQALWFKPDQITQQVI 202

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 P+  ++   +   PFQ         +     I  +      Y      +   + 
Sbjct: 203 DGVKQSPLFQASQAYWQIEPFQWGVTRQQALQVLQFFIQTRLSSFGPYQDAMITNEQTM- 261

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             + LSPYL++G+L P +     ++ ++      +      +   I +            
Sbjct: 262 WHALLSPYLNLGLLHPLEVVLAAEQAYLADRDTWELS---SVEGFIRQILGWREYMHGIY 318

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + +G+ +         +           G T    +   + Q+   G+ H+  R++  + 
Sbjct: 319 LYLGEDYPERNWFNHSHPLPSFYW---TGETPMNCLHQVIHQVKQTGYAHHIQRLMVLNN 375

Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385
                 V  +  +++F +  +D  D 
Sbjct: 376 FALIAGVSPQELQDWFHAAFIDGYDW 401


>gi|123245797|emb|CAM15163.1| rearranged L-myc fusion sequence [Mus musculus]
 gi|148698459|gb|EDL30406.1| mCG122876 [Mus musculus]
          Length = 1918

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 81/362 (22%), Gaps = 36/362 (9%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92
             PE W    +       +          LS                S++DD  E     
Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDDGKEDKQYR 524

Query: 93  -WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
             L     ++R  K   + +     ++         +  +  +    S +     I    
Sbjct: 525 RSLTDQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTCP 584

Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
           + + K      F   +++++     RS       L         P+      +       
Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSAQRGIYPKSPTGSLEQNPEQAR 644

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
                          +     ++ RD+    GT     +     LS       LK E  +
Sbjct: 645 G-----ESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 694

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K            RE   +             F     +         +      
Sbjct: 695 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 745

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           Y  F  ++    +L      H+ LR          +  D      +      D     N 
Sbjct: 746 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 801

Query: 390 GG 391
            G
Sbjct: 802 LG 803


>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
 gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
          Length = 582

 Score = 37.1 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 24/97 (24%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---------------ATPEQWRQH---- 51
           L W++  +R   N AL  A   ++   + + +                  ++W+      
Sbjct: 39  LYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVTPKLQSFQDDEWKAEAIQD 98

Query: 52  -----GISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
                  + R + F    L    + L+ +G+      
Sbjct: 99  ANAHAFATERHALFALEGLTDAYQRLASRGLNLDVFH 135


>gi|310831138|ref|YP_003969781.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386322|gb|ADO67182.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1]
          Length = 480

 Score = 37.1 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 29/293 (9%), Positives = 79/293 (26%), Gaps = 8/293 (2%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
             +  +   +   F + +    +    K  +         +     +++     L     
Sbjct: 99  FKNIYIHPTINFTFNHLETTDIKKACFKNGKYYHDDFYKFQRKRLDIMMINNKPLKDKYS 158

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
              +        I+      ++        +   +   +        F     +      
Sbjct: 159 FDNMNRKTFPKNIKIPELPKIKQNKYIKEAIKYTLEHFSKNYGSLENFIYPISLTSSRNW 218

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
             + +  +      Y      + P     + +SP +++G+L+  +      E +      
Sbjct: 219 FKIFLQERLKNYGPYQDAVDINKPFG-FHAVISPMMNVGMLTDTEVIKISYEYYQTNKNN 277

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
               +F      +           Y  +   +      +    N  + L   W +G TG 
Sbjct: 278 IPINSFEGFIRQVIG------WRNYVYLIYLEEGDKIKQMNFLNHTNKLSNKWWEGNTGI 331

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             +D  ++++    + H+  R++     +    VD       FM   +D  D 
Sbjct: 332 LPLDDIIKKIVNYAYAHHIERLMYLGNFLLISQVDPNEVYRIFMEWTIDSYDW 384


>gi|18309607|ref|NP_561541.1| hypothetical protein CPE0625 [Clostridium perfringens str. 13]
 gi|18144284|dbj|BAB80331.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 550

 Score = 37.1 bits (84), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%)

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             + +S             + Y+        +    +              TG    +N 
Sbjct: 67  WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
             +F+   +       IG +                    R + +          +  G 
Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
                 W  L+++              +                     + +     T  
Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            + N D +      +  T +  ID +    N  G M         S          +   
Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGAKESN 299

Query: 374 EYFMSQLLD 382
           +      LD
Sbjct: 300 KVIDDWYLD 308


>gi|269965488|ref|ZP_06179606.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829851|gb|EEZ84082.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 514

 Score = 36.7 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 82/318 (25%), Gaps = 26/318 (8%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +C + +  +   +    Q    K      +     +R  +    L
Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +      + L                 + ++++   +        L G 
Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVSDIIERLAKHDIKTIGNLEGD 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +                             +              Q D       S++S 
Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305
            L+  +L PR+  +   + F        S    ++ + L WRE+ R    A  P      
Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +   +        A          +  A+ Q     + H+  R++         
Sbjct: 335 ELGAERKLPNFFWSGETKMA---------CMRNAIEQSLDYAYAHHIQRLMVIGNFCLLT 385

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +D    +E+++   +D 
Sbjct: 386 EIDPDQVDEWYLGIYVDA 403


>gi|153831587|ref|ZP_01984254.1| photolyase [Vibrio harveyi HY01]
 gi|148872097|gb|EDL70914.1| photolyase [Vibrio harveyi HY01]
          Length = 514

 Score = 36.7 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 85/318 (26%), Gaps = 26/318 (8%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  +     +C++ +  +   +    Q    K      +     +R  +    L
Sbjct: 110 LLEQLAKLKLDGVVTRCADSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                      +      + L                 ++ +V+   +        L G 
Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIVERLAKHDIKTIGNLEGD 225

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +                             +              Q D       S++S 
Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305
            L+  +L PR+  +   + F        S    ++ + L WRE+ R    A  P      
Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +  ++  +     A          +  A+ Q     + H+  R++         
Sbjct: 335 ELGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +D    +E+++   +D 
Sbjct: 386 EIDPDQVDEWYLGIYVDA 403


>gi|224012525|ref|XP_002294915.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969354|gb|EED87695.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 821

 Score = 36.7 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/181 (9%), Positives = 45/181 (24%), Gaps = 2/181 (1%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV--FQYHQCSNF 87
            +  +  ++  ++      + + I +R    +  +   V K L  +G             
Sbjct: 500 SNRGNNYIVLFYVVDANFIKSYPIKSRHRTELLKAYDDVYKYLRIRGYRPKLHRLDNETS 559

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
            D  +++     + + T    +R      + R              K++  S        
Sbjct: 560 KDVEDFIVEQNAKHQYTPPDIHRTNIAERMIRTWKNHMCAVRAGTPKTYRLSNWCKDLEQ 619

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
           ++  L M +  T          ++        P   +         P             
Sbjct: 620 VDMTLNMMRPCTQNPNLSAYEAMEGMFSFDATPMAPIGTECMIHVKPSKRHTWGYHSMKA 679

Query: 208 F 208
           +
Sbjct: 680 W 680


>gi|254283103|ref|ZP_04958071.1| photolyase [gamma proteobacterium NOR51-B]
 gi|219679306|gb|EED35655.1| photolyase [gamma proteobacterium NOR51-B]
          Length = 527

 Score = 36.7 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 76/268 (28%), Gaps = 9/268 (3%)

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++               +L  G         Y           +++         
Sbjct: 162 WADGRKQLRMEYFYRDMRRQYDILMDGDKPCGDRWNYDNENRVGWRQQEDIPPRVNVEPD 221

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                +   V+ +      D     +       E+               Y     +   
Sbjct: 222 AVTAAVIEEVSAAFPDNPGDLSQFRLAVTQTGAERQFDWFCEHALSRFGTYQDALVEESP 281

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S +S YL+ G+L P +   R+++ + +   +  +        L WRE+ R +   +
Sbjct: 282 WVFHSLISMYLNCGLLDPLEVCRRVEQHWRNGDCELSAAEGFIRQVLGWREYIRGIYWRF 341

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 + F      +           W  G T    +  A+RQ   +G+ H+  R++  
Sbjct: 342 MPDYADENFFGAERPLPDWF-------W-SGETEMRCVSQAVRQSLDLGYAHHIQRLMVI 393

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
                   +D +   +++++  +D  + 
Sbjct: 394 GNFSLLTGLDVQSVCDWYLAVYIDAYEW 421


>gi|262373183|ref|ZP_06066462.1| photolyase [Acinetobacter junii SH205]
 gi|262313208|gb|EEY94293.1| photolyase [Acinetobacter junii SH205]
          Length = 509

 Score = 36.7 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 100/363 (27%), Gaps = 42/363 (11%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD------------------- 95
            ++  FI++++    KSL  +G   +Y        +  ++D                   
Sbjct: 44  PQKIAFIFSAMRHFAKSLKAQGWKIRYQTFDRTQAAQGFIDFIQAQLKKNPAEALIITES 103

Query: 96  -SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154
             + LQQ +   + N+     ++  D       Q      S   ++ +            
Sbjct: 104 GEFRLQQAIATTWSNQLQIPVQILNDDRFFCSPQAFRNWASNTKTLRMEFFYRKLRQQTG 163

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
           Y +          N    + ++        +      +            +    IG+ N
Sbjct: 164 YLMNGNEPIGGKWNYDIENRQAWNKNDPIPSALQFDRDQIDLDVIELVKTEFKEHIGQIN 223

Query: 215 ALHILRKFCK--------------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
             +      +                  Y             S LSPYL+ G+LSP++  
Sbjct: 224 HFNWATTRQQALEALQYFIDYQLIHFGQYQDAMVSGKDYLFHSLLSPYLNCGLLSPKEVC 283

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           +  ++ + D  +   +        L WREF R +            +    E        
Sbjct: 284 DAAQQAYFDHHVPLNAAEGFIRQILGWREFIRGIYW-----LKMPTYPDLNELEADRNLP 338

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                     T    +  A+R      + H+  R++          +  +   ++++S  
Sbjct: 339 DYFW---TAETKMLCLREALRNSLENAYAHHIQRLMVIGNFTLLNGISPKQVNDWYLSVY 395

Query: 381 LDG 383
            D 
Sbjct: 396 ADA 398


>gi|221057343|ref|XP_002259809.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
 gi|193809881|emb|CAQ40585.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
          Length = 1379

 Score = 36.7 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/278 (7%), Positives = 56/278 (20%), Gaps = 24/278 (8%)

Query: 89   DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            D  EWLD    +  + +       +            + +++ I    +         + 
Sbjct: 1106 DYKEWLDQ--KENPIVRTIQKLWDKFINSNFMIWRRYKGRNKDIEMPTNPDWENWMKELK 1163

Query: 149  NHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
            N            R    +         +     + +      L                
Sbjct: 1164 NEWSLYNAYIHNERIKWFREKEIELGKFIEDFQFKWMHYNTELLEKHSFDVYKKSQKWDD 1223

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
             + I  +   G             +   +  + R+   +        + +          
Sbjct: 1224 SKWIKWIERDG-------ESIMIMDIEKWLNQSREEYNLWQLEDWEQWKNNK------IL 1270

Query: 261  NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + L  E      +          +   R E               + +  W  + +    
Sbjct: 1271 DWLLSEKKCDQYQYWLKWEYSNKQPSLRNEKLDWYTWKKIRKSEAEDWQKWVHEKDQILI 1330

Query: 320  SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                + W+           +M       W+  +   + 
Sbjct: 1331 QVKNEIWESWKEKKKNALFSMLNHFINNWIIKKQWKVW 1368


>gi|291392713|ref|XP_002712879.1| PREDICTED: von Willebrand factor [Oryctolagus cuniculus]
          Length = 2829

 Score = 36.7 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 50/247 (20%), Gaps = 5/247 (2%)

Query: 96   SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
                  R       +      +   +   + L      K+       P G  L+    + 
Sbjct: 2475 RVAQCARKPCEDSCQTGFTYVLHEGECCGRCLPSACEVKAGWRRGDSPWGDSLSSWKSVG 2534

Query: 156  KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
              +       + N        + V    ++ P                     P      
Sbjct: 2535 SRWASPEDPCLINECVRVKEEVFVQQQNVSCPQLNIPTCPVGFQLSCKTAECCPSCRCEP 2594

Query: 216  LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
            +                  D     + T QL P     +    +C     E       + 
Sbjct: 2595 VQACMLNGTIIEPGKSVMIDVCTTCRCTVQLGPVNGFKL----ECRKTTCEACPLGYKEE 2650

Query: 275  KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            K+        L      +       ++   +      +      +      W++  TG P
Sbjct: 2651 KNQGECCGRCLPMGCTIQLRGGQIMTLKRDETLQDGCDSHFCKVNERGEYIWEKRVTGCP 2710

Query: 335  IIDAAMR 341
              D    
Sbjct: 2711 PFDEHKC 2717


>gi|120404245|ref|YP_954074.1| deoxyribodipyrimidine photolyase--like protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957063|gb|ABM14068.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 494

 Score = 36.7 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 86/351 (24%), Gaps = 29/351 (8%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
               ++  L  ++ +    G      +   + D+++      L    T            
Sbjct: 44  HRQKLHLVLSALRHAERDLGERAMLIKADTYTDALQQFKRPVLVHEPTSHAAETFVHRLH 103

Query: 117 VR-----RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            +             L  +   +               H  + + V     + +      
Sbjct: 104 KQGLVADVLPTPTFALSRKDFQQWACQRTRFRMEDFYRHQRRRFDVLMDGDEPVGNRWNY 163

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-------------------E 212
            +    P P  + T  V     PR  D   Q    +  +                    +
Sbjct: 164 DEDNREPPPKKQRTLGVPAPYQPREDDIDEQVRRDLDAMDLDTVGVDGPRLFAVTPAEAK 223

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           +     +         Y             S LS  L++GVL P    +  +  + D   
Sbjct: 224 RALARFIEHRLPSFGRYEDAVMAEDWAMAHSLLSVPLNLGVLHPLDAVDEAERAYCDQQA 283

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
              +        L WRE+  HL   +      K  +                A       
Sbjct: 284 PLAAVEGFIRQILGWREYMWHLYWHFGPEYAAKNELAAHTPPPTWWTDLDADA-----VT 338

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
              +  A++ +   GW H+  R++                 E+F +  +DG
Sbjct: 339 AQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 389


>gi|326912661|ref|XP_003202667.1| PREDICTED: ephrin type-A receptor 1-like [Meleagris gallopavo]
          Length = 969

 Score = 36.7 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 87/325 (26%), Gaps = 11/325 (3%)

Query: 86  NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145
            +DD    +  +  +  V+ +         E         RL      K      +    
Sbjct: 596 PYDDPSRGVLEFTKELDVSCVTMENVIGEGEFGEVYRGSLRLP----GKERIVVAIKTLK 651

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205
           S  + +     +          +     L  +      +              +  +  +
Sbjct: 652 STYSDSQWWNFLREATIMGQFNHPNIVHLEGVVTKRRPMMIITEYMENGALDTFLRENEE 711

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
              P+   N L  +         +    RD+ A       S    +      +      E
Sbjct: 712 KFSPVQLVNMLQGIASGMTYLSEHNYVHRDLAARNILVTRSLQCKVSDFGLSRILENDAE 771

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              +         ++    +  R F      +   + M +      +      +  ++++
Sbjct: 772 GTYETKGGKIPIRWTAPEAIAHRIFTSASDVWSFGIVMWEVLSFGDKPYGNMTNQEVMRS 831

Query: 326 WKQGYTGFPIIDA--AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            + GY   P +D    + +L    W H+R+R      +   L         + +  + D 
Sbjct: 832 LEDGYRLPPPVDCPSILYELMKSCWSHDRMRRPHFQEIRAQLQHFS--SSPHLLRSVADF 889

Query: 384 DLASNNGGWQWAASTGNDSVPYFRI 408
           D        +  + +G+D +PY  I
Sbjct: 890 DPRVTL---RLPSCSGSDGIPYRSI 911


>gi|54293212|ref|YP_125627.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens]
 gi|53753044|emb|CAH14491.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens]
          Length = 512

 Score = 36.7 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 106/395 (26%), Gaps = 47/395 (11%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY----- 81
            AA +     V    +A    +  H    ++  F+++++    + L +KG   +Y     
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVSHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDD 76

Query: 82  ------------------------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
                                            ++       Q  +    +     + ++
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKI 136

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQA 172
              +   K  +   +   +                       Y          I +  + 
Sbjct: 137 NEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPKR 196

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              +  V    + G V+      F       +        + A + +  F      Y   
Sbjct: 197 LEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEADYFMEHFLCNFGAYQDA 256

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                     S+LS YL+ G+L P +     ++ +    +   S        L WRE+ R
Sbjct: 257 MLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVR 316

Query: 293 HLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +   F P       F        +              TG   I   +RQ +T  + H+
Sbjct: 317 GIYWLFMPDYGEMNYFNACRPLPSFFWGEE---------TGMFCIKEVVRQTSTEAYSHH 367

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385
             R++          +D +   E++++   D  + 
Sbjct: 368 IQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEW 402


>gi|194214076|ref|XP_001915620.1| PREDICTED: similar to KIAA0542 protein [Equus caballus]
          Length = 1193

 Score = 36.3 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 26/301 (8%), Positives = 74/301 (24%), Gaps = 18/301 (5%)

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
            +     +     +            R    ++ LQ        +  V      +   A 
Sbjct: 60  CIRCVARKFLYLWIRKTFGRVFPSKARLYYEQRILQKVFEEWKEEWWVFHREWKLCVRAD 119

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
             Y+ Y                + +    ++         + + +      +       +
Sbjct: 120 CHYRYYLYNLMFQTWKTYVHQQQEMRNKYMKAEDHDAKQKMRQAWKSWLIYVVFRRTKLQ 179

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
                +  +        + E R                +G +   +  +    +   L +
Sbjct: 180 MQTTALEFRQRSVLWVRWREWR--------------QRLGQVRLGRALHATAVKHRALRL 225

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           + ++ +      L  R   R +++        + +      +E  +   + + WK+    
Sbjct: 226 QLQAWSQWQQQLLCVRRERRKVVSAVKHHQHWQKWRSLKAWLENLQGRRMKRQWKEMAQQ 285

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFL----VKDLLVDWRIGEEYFMSQLLDGDLASN 388
           F  +           W   R + +         +   +V WR    +    LL  + A+ 
Sbjct: 286 FHRVTVLHTHFCDWQWAWERRKSLYTHHTRVMGLARRMVLWRAFTHWKHYVLLCAEEAAQ 345

Query: 389 N 389
            
Sbjct: 346 W 346


>gi|260797857|ref|XP_002593917.1| hypothetical protein BRAFLDRAFT_234854 [Branchiostoma floridae]
 gi|229279149|gb|EEN49928.1| hypothetical protein BRAFLDRAFT_234854 [Branchiostoma floridae]
          Length = 1553

 Score = 36.3 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 49/259 (18%), Gaps = 17/259 (6%)

Query: 98   CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
              ++   K          + RR         H +  +  +     P  ++L         
Sbjct: 1159 VTEKDFEKAPAGGCMRPCDFRRCGHACASACHPIDPEHEEYKCKKPCKNVLCDLGHKCPK 1218

Query: 158  YTPFRKALIQNLVQ---ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
                     +  V+    D +     A  +        IP     P              
Sbjct: 1219 PCHETCDDCKIRVEKTIPDCQHKQKVACYVPPSEFVCQIPCEKTLPCNHKCKNKCGERCT 1278

Query: 215  ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
                     +    + ++             +P           C   LK          
Sbjct: 1279 QYCKEVVPHQLPCLHTIQAACSAKEDSLVCNTP-----------CPQVLKCGHPCSGTCH 1327

Query: 275  KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
                       +       + +            P       N+  H      Q   G P
Sbjct: 1328 LCKQGRLHQPCVRPCNRELICSHQCREPCSHQNCPPCRSPCRNRCVHSH---CQDECGKP 1384

Query: 335  IIDAAMRQLNTIGWMHNRL 353
             +    ++       H++ 
Sbjct: 1385 CVVMPCQEPCEWRCKHHKC 1403


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.121    0.374 

Lambda     K      H
   0.267   0.0367    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,859,715,987
Number of Sequences: 14124377
Number of extensions: 228789962
Number of successful extensions: 699562
Number of sequences better than 10.0: 3622
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 829
Number of HSP's that attempted gapping in prelim test: 685973
Number of HSP's gapped (non-prelim): 4617
length of query: 483
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 340
effective length of database: 2,823,007,719
effective search space: 959822624460
effective search space used: 959822624460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 83 (36.7 bits)