BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] (483 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 420 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 483/483 (100%), Positives = 483/483 (100%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF Sbjct: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD Sbjct: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 Query: 481 SLL 483 SLL Sbjct: 481 SLL 483 >gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568] gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568] Length = 476 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 305/473 (64%), Positives = 374/473 (79%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ FI+A+LL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+++GI YHQC +F +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R Sbjct: 61 QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + IC+SFDDS+LLPPGS+ + +MYK+YTPFRKA IQ L ++D++SLP P R G Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + IP FDYP + FP GE+ AL LR FC+E+V Y+EQRD+PAI GTS LS Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E LL SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WL EL +VP IH PH W ++ L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13] Length = 476 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 299/473 (63%), Positives = 366/473 (77%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC + A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL Sbjct: 1 MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ++L+ +GI HQC +F +++WL +YC Q+RV LFYNRQYEINE++RD+ ++R Sbjct: 61 QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +VIC+SFDDS+LLPPGS+ +MYK+YTPFRKA IQ L ++D+RSLP P R G Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S P FDYP FP GE AL LR FC+E+V Y++QRD PAI GTS LS Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC+NRL+ E +L SGAF WLNELIWREFYRHLM YP++C +P Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W + LL AW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP +H PH W +K +L+YPLPIVDHK+A TL + AAK+ Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473 >gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15] Length = 472 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 AIDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86] gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M605] Length = 472 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11] gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088] gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7] gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3] gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA271] gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H591] Length = 472 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042] Length = 472 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-LCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536] gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11] gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1] gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1] Length = 472 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509] Length = 472 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 248/473 (52%), Positives = 330/473 (69%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y AA+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026] gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli UMN026] gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412] gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302] gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1] Length = 472 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 MIEPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W ++ LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68] Length = 472 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K++ Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472 >gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354] gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354] Length = 472 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 331/475 (69%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AAC S A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E ++ C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL NVP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O26:H11 str. 11368] gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14] Length = 472 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112] Length = 472 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 477 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 363/476 (76%), Positives = 414/476 (86%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL Sbjct: 1 MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R Sbjct: 61 QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK IQNL Q+DLRS+P P IR TG Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYLSIG LSPRQCWNRL EF D+LIK SGAFSWLNELIWREFY HL+ FYPS+C GKP Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+KIEWN D L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 WLPEL NVP QYIH PH+W+D + YP PIVDHK+A HT+++Y A+KQS+ Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476 >gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019] gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O111:H- str. 11128] gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1] gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1] gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1] gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180] Length = 472 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94] Length = 472 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A] gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7] Length = 472 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227] gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83] gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74] Length = 472 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227] Length = 472 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 247/475 (52%), Positives = 326/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SLDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C +P Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AKK + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582] Length = 476 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 287/475 (60%), Positives = 356/475 (74%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN+ALYAAC + A V+AVFIATP+QWRQH ++ARQ+ FI+A+L Sbjct: 1 MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L+Q+GI QC +F +++WL +C V LFYNRQYE+NE RRD+ LE+R Sbjct: 61 QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V C++FDDS+LLPPGS+L+ +MYK+YTPFR+A + L ++D+ SLP PA R G Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +D FP GE+ AL LR FC+++V Y QRDIPA+ GTS LS Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G LSPRQC NRL+ E D+L P GAF WLNELIWREFYRHL+ P++C +P Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ WN + AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP +H PH W +K L+YPLPIVDH +A TL + AAK+ + Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKRGA 475 >gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120] Length = 472 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627] Length = 472 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 327/473 (69%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVW R DLR+ DN AL AC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ V Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G SPRQC +RL E L WLNELIWREFYRHL+ +YP++C +P Sbjct: 240 ASLATGGGSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLITYYPTLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470 >gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1] Length = 472 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1] gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989] gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A] gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli 55989] gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI1] gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1] gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1] gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357] gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9] Length = 472 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863] gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v] Length = 472 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 247/473 (52%), Positives = 327/473 (69%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R + Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSSV 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 MIEAAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470 >gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str. 'morsitans'] Length = 481 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 265/472 (56%), Positives = 336/472 (71%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI +L Sbjct: 1 MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ +GI YHQC++F +EWL ++C ++RV KLFYN QYE+NE RD+ LE+R Sbjct: 61 HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +C+ FDDSVLLPPGS+ QMYKVYTPFR A + L + D LP P+ R Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P FDYP +P GE AL LR FC +++ Y RDIPA+ TS+LS Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L++GVLSPRQC+ RL++ + L ++GAF+WLNELIWR+FYRHL+ +P++C +P Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FIPWT + W +D L AW G TG+PI+DAAMRQL GWMHNRLRMI+ASFLVKDLL Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 WLP L +VP Y+H P+ W D L+YPLPIVDH KA L+ Y AAK Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAK 472 >gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5] gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FD SV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22] gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171] gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O103:H2 str. 12009] gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B] gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 322/475 (67%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. CB9615] gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA 5905] Length = 472 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 247/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739] gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739] Length = 472 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606] gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1] gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B str. REL606] gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BL21(DE3)] gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1] gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli BL21(DE3)] gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489] Length = 473 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 492 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 269/471 (57%), Positives = 345/471 (73%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ +L V Sbjct: 7 THVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLENLRLV 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK ++ RL Sbjct: 67 QQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 127 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDARGEPIN 186 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F + FP GE+ AL LR+FC+E+V Y +QRD PA+ GTS+LSPY Sbjct: 187 NMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 246 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 247 LALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 306 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+D Sbjct: 307 AWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPEL VP + IH PH W DK+ LNYPLPIVDHK A TL + AAK Sbjct: 427 LPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAKN 477 >gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W] gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli W] gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11] Length = 472 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP PIVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1] Length = 472 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+T F+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli M718] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163] gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163] Length = 492 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 269/471 (57%), Positives = 343/471 (72%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++ Q+ F+ +L V Sbjct: 7 THVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLV 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q++L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK ++ RL Sbjct: 67 QQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQVKDRLT 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P +R Sbjct: 127 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVRGEPIN 186 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 F + + FP GE+ AL LR+FC+E+V Y +QRD PA GTS+LSPY Sbjct: 187 NTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGTSKLSPY 246 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++SPRQC+NRL+ E ++L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 247 LALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLCKHRPFT 306 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+D Sbjct: 307 AWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPEL VP + IH PH W DK LNYP PIVDHK A TL + AAK Sbjct: 427 LPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAKN 477 >gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. W3110] gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B] gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736] gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli] gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K12 substr. W3110] gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. MG1655] gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110] gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS] gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli str. K-12 substr. DH10B] gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638] gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli BW2952] gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1] gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1] gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1] gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407] gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1] gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431] gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520] gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482] gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H736] gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 326/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 NDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101] gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 326/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073] gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972] gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1] gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1] gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972] gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82] gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG 857C] Length = 472 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39] gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli IAI39] Length = 472 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS +V+A++IATP QW H +S RQ+ FI A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP +C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPLLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W ++ +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia symbiotica str. Tucson] Length = 475 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 301/473 (63%), Positives = 365/473 (77%), Gaps = 1/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRITDNKAL+AAC+ DA+V+AVFIATP+QWR+H I+ RQ+ I+ASL Sbjct: 1 MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L QKGI HQC +F SI+WL YC +Q+VT LFYNRQYE+NE RRD+ +E+R Sbjct: 61 QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RV C+ FDDS+LLPPGS+ + +MYKVYTPFR A I+ L ++D+R LP P R G Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPRA-G 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P F+Y FP GEQ AL LR FC+++V Y+ QRD+PAI GTS LS Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IG LSPRQC+NRL E +L + +SGAF WLNELIWREFYRHLMA YP++C +P Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+K+ W D LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDLL Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP IH PH W K L LNYPLP+VDH++A TL + AAK+ Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQ 472 >gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253] Length = 472 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 RRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ + LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SLDPAPSITLNYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM ++PS+C +P Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472 >gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185] Length = 472 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 326/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 INWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046] gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella sonnei Ss046] gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G] Length = 472 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGVGSV--WLNELIWREFYRHLITYHPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 IIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a] gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli ED1a] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 327/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14359] gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia coli O157:H7 str. FRIK966] gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. Sakai] gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4196] gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4113] gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4076] gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4401] gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4486] gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4501] gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC869] gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC508] gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4206] gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4045] gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4042] gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4115] gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli] gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. TW14588] gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O157:H7 str. TW14359] gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC1212] gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. G5101] gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. 493-89] gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H 2687] gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. LSU-61] gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1044] gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. 1125] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 246/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197] gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ F + E+ A+ LR+FC+ Y +QRD PA +GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88] gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1] gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli S88] gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA] gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034] gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146] gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3] gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327] gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252] gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933] gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli O157:H7 str. EDL933] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 246/473 (52%), Positives = 325/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W +K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 QWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 497 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 272/472 (57%), Positives = 346/472 (73%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+ +L Sbjct: 11 ATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLLENLTS 70 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 VQ +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK ++ RL Sbjct: 71 VQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRL 130 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++A+ +P P R Sbjct: 131 ADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDARGEPI 190 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + F + FP GE+ AL LR+FC+E+V Y QRD+PA+ GTS+LSP Sbjct: 191 HNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPGTSKLSP 250 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 251 YLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPF 310 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 WT+ ++W + S L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+ Sbjct: 311 TAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFLVKDLLI 370 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRH Sbjct: 371 DWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRH 430 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 431 WLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAKN 482 >gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str. E2348/69] gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli O127:H6 str. E2348/69] gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75] Length = 472 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 324/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDD V+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W +S L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89] Length = 472 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + R+T LFYN QYE+NE RD E+ Sbjct: 61 ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E +L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W +K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99] gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99] Length = 477 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 273/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + AKVIA+FIATPEQWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGI QC +FD S+ L ++C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP P +R Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180 Query: 186 GPVTPSNIP-RFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P F+YP + IDP FP GE+ A+ LR+FC++ V Y ++RD+PA GTS Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDARV--FVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W + L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL +VP +YIH PH W KN +L+YP P+VDHK+A TL+ + AA+K+ Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475 >gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143] Length = 472 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 248/475 (52%), Positives = 329/475 (69%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT+LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W DK+ ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 492 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 269/471 (57%), Positives = 344/471 (73%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+ +L V Sbjct: 7 THVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q +L++KGI YH+C++F S++WL +C QQ+ T LFYN QYEINE RDK ++ RL Sbjct: 67 QHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+ + DS+LLPPGS+L +MYKV+TPFR+A I+ L+++D +P P R Sbjct: 127 DSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDARGEPID 186 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F + FP GE+ AL LR+FC+E+V Y +QRD PA+ GTS+LSPY Sbjct: 187 NTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 246 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 247 LALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 306 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT+ ++W + L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+D Sbjct: 307 AWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLID 366 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIRHW Sbjct: 367 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHW 426 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPEL VP + IH PH W DK+ LNYPLPIVDHK A +TL + AAK Sbjct: 427 LPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAKN 477 >gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli H299] Length = 472 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 323/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC NS A V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168] Length = 472 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 318/475 (66%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L Sbjct: 1 MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + + ++FD S+E + + C VT LFYN QYE+NE RD +EK Sbjct: 61 ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ IC+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + P R Sbjct: 121 LRKV-ICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V P Q +FP+ E+ + LR+FC++ Y QRD PA GTS+LS Sbjct: 180 AVAPQQKITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM P++C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEHPQALDGGAGSV--WLNELIWREFYRHLMTRNPALCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W ++ QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FIR Sbjct: 358 IDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL VP + IH P W + ++L+YP P+VDHK+A TL Y AA+K + Sbjct: 418 RWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472 >gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591] gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591] Length = 476 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 269/474 (56%), Positives = 343/474 (72%), Gaps = 1/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI YHQC +F S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE Sbjct: 61 CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C FDDS+LLPPGS++ + MYKV+TPFR A I+ L Q D+ S+P P R G Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T FDYP + FP+GE AL LR+FC+E+ +Y E+RD+PA TS+LS Sbjct: 181 EFTLVP-LAPFDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+LSPRQC+NRL+ E D L +P+SGAF+W NEL+WREFYRHL+ F PS+C +P Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSLCKHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT K+ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR Sbjct: 360 IDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +P + +H PH W + ++YP PIVDHK+A TL + AAKK Sbjct: 420 RWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKKS 473 >gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602] Length = 476 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 276/475 (58%), Positives = 347/475 (73%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN+AL+AAC + A+VIAVF+ATPEQW+QH ++ RQ+ FIY L Sbjct: 1 MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DS+ WL +C ++V LFYN+QYE NE +RD LE Sbjct: 61 ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + VIC +FDDS+LLPPGS++ +MYKVYTPFR+A + L ++D RSLP P R Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ FDYP I F IGE+ A + LR FC+E+V Y+EQRD+PA+ GTS LS Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGVLSPRQC NRL+ E D+L K GAF WLNEL+WREFYRHL+ +P +C +P Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F+ WT+ + W LQAWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD G FI+ Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +VP + IH PH W +K+ L+YPLP++DH +A TL + AAK +S Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475 >gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586] Length = 481 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 266/476 (55%), Positives = 345/476 (72%), Gaps = 1/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L +KGI Y QC +F S+ WL +C +++VT+LFYNRQYE NE +RD L + Sbjct: 61 CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +C+ FDDS+LLPPGS++ + +MYKV+TPFR A I+ L D+ SLP P R G Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 VT + FDYP + FP+GE A+ LR+FC+E+V +Y RD+PA TS+LS Sbjct: 181 DVTLAP-LAPFDYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+LSPRQC+NRL+ E D L +P+ GAF+W NEL+WREFYRHL+ F PS+C +P Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 HW+PEL +P + +H PH W ++YP PIVDHK+A TL + AAK+++ Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEAA 475 >gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum SCRI1043] Length = 497 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 270/471 (57%), Positives = 341/471 (72%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VWLRNDLRITDN ALYAAC + A V+AVFIATP QW +H ++ RQ+ F+ +L V Sbjct: 12 THVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 71 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++KGI YH+C++F S++WL +C +Q+ T LFYN QYEINE RDK ++ RL Sbjct: 72 QHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQVKDRLA 131 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C + DS+LLPPGS+L +MYKV+TPFR+A I+ L++AD +P P R Sbjct: 132 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDARGEPIN 191 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + F + FP GE+ AL LR+FC+E+V Y +QRD PA+ GTS+LSPY Sbjct: 192 NTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPY 251 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G++SPRQC+NRL+ E D+L + + GAF+W NEL+WREFYRHL+ +P +C +PF Sbjct: 252 LALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFT 311 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT+ ++W + L AW+QG TG+PI+DAAM QLN GWMHNRLRMI ASFLVKDLL+D Sbjct: 312 AWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVKDLLID 371 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIRHW Sbjct: 372 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGRFIRHW 431 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPEL VP + IH PH W DK + LNYPLPIVDHK A TL + AAK Sbjct: 432 LPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAKN 482 >gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya dadantii 3937] Length = 476 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 267/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW H ++ Q+ F+ +L Sbjct: 1 MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L +K I Y QC +F + WL +C ++VT+LFYNRQYE NE +RD+ LE+ Sbjct: 61 CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C+ FDDS+LLPPGS++ + MYKV+TPFR A ++ L Q D+ S+P PA R G Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +TP++ FDYP + FP GE AL LR+FC+E+V +Y EQRD+PA+ TS+LS Sbjct: 181 DITPAS-LAPFDYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + +SGAF+W NEL+WREFYRHL+ F P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT ++ W L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL +P + +H PH W + ++YPLP+VDHK+A TL + AAK + Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAKNGA 474 >gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167] Length = 472 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 321/475 (67%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K + L+YP IVDHK+A TL Y A+K + Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472 >gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905] Length = 472 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 243/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +M+KV+TPF+ A ++ L + + VP +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 500 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 250/479 (52%), Positives = 333/479 (69%), Gaps = 4/479 (0%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 + M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A Sbjct: 25 RSCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISA 84 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD + Sbjct: 85 QLNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAV 144 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 EK L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR Sbjct: 145 EKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIR 203 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++G ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GT Sbjct: 204 VSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGT 263 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C Sbjct: 264 SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALC 321 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLV Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500 >gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401] gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70] gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218] Length = 472 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1] Length = 474 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 271/476 (56%), Positives = 341/476 (71%), Gaps = 3/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+ Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C+ F DSI+ L +C + +V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P+ + IP F + +FP GE AL LR F + + Y +RD+PA+ TS+L Sbjct: 181 APLKTTPIPAFDCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YLS GVLSPRQC +R+ E D L ++ F+WLNELIWREFYRHL+ YP++C K Sbjct: 241 SVYLSTGVLSPRQCLHRVLHEHPDALDNSRA--FTWLNELIWREFYRHLLVAYPALCRHK 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG FI Sbjct: 359 LIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 RH+LPEL +VP +IH PH W +KN+ L+YP PIVDHK A TL+ + AK + Sbjct: 419 RHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012] gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74] Length = 472 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 243/473 (51%), Positives = 324/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 VSLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W+ K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 244/472 (51%), Positives = 325/472 (68%), Gaps = 3/472 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ L Sbjct: 61 LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 RNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + PS FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 IEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSA 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L+ G LSPRQC +RL E L WLNELIWREFYRHL+ ++PS+C +PF Sbjct: 240 SLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+ Sbjct: 298 IAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 DWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQ 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 418 WLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469 >gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272] gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227] Length = 472 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 245/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 RWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 473 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 254/474 (53%), Positives = 334/474 (70%), Gaps = 4/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN +YE+NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ IC+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + +P P IR +G Sbjct: 121 LQSV-ICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E A+ LR+FC + Y +RD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLP L ++P + IH P W +K + L+YP PIVDHK+A TL+ Y AA+K Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARK 471 >gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC 35469] gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia fergusonii ATCC 35469] Length = 472 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++KGI + + +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIETAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y AKK + Sbjct: 418 QWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472 >gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2] Length = 472 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 247/474 (52%), Positives = 326/474 (68%), Gaps = 4/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A V+A++I+TPEQW+ H ++ RQ+ + A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + + C+Q V+++FYN QYEINE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +C+ FDDSV+LP G+++ +MYKV+TPF+ A ++ + + P +R +G Sbjct: 121 LPQV-VCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D FP E+ A+ LR FC++ Y + RD PAI GTS+L Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC NRL E L WLNELIWREFYRHLM ++P++C + Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQALEDGAGSV--WLNELIWREFYRHLMTYHPALCRYQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT++++W + LQAWK G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FI Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL +VP + IH P SW +K ++L+YP PIVDHK+A TL Y AA+K Sbjct: 418 RQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471 >gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6] Length = 472 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 243/473 (51%), Positives = 322/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y A+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470 >gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661] Length = 475 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 266/477 (55%), Positives = 343/477 (71%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL Sbjct: 1 MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ SL++KGI QC +F S+E L +C Q V +LFYN QYE+NE +RD E+R Sbjct: 61 DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L +I + FDDS+LLPPGS+L +MYKV+TPF +A ++ L + +P P R Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P++ + + FDYP +A D F GE+ ALH LR FC++ V Y + R+IPA+ GTS+ Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +RL E L F WLNELIWREFYRHL+ +P +C Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGLDDS--NVFVWLNELIWREFYRHLLVAWPKLCRY 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPFI WT+ ++W L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL +VP ++IH PH W D ++L+YP P+VDHK+A TL + AA+KQS Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475 >gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301] gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T] gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 301] gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella flexneri 2a str. 2457T] gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017] gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T] gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71] gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671] gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71] gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304] Length = 472 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 243/473 (51%), Positives = 323/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H P W K + L+YP PIV+HK+A TL Y AA+K Sbjct: 418 RWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470 >gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703] gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703] Length = 477 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 274/473 (57%), Positives = 349/473 (73%), Gaps = 1/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+ ++ +L Sbjct: 1 MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q++L +KGI YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + Sbjct: 61 QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ V ++FDDS+LL PGS++ + +MYKV+TPFR A I L+Q S+P P R Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQ- 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P+ P P FDYP + FP GE AL LR+FC+E+V+ Y E RD+P+ TS+LS Sbjct: 180 PLPPLTPPAPFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GVLSPRQC+NRL+ E D L + + GAF W NEL+WREFYRHL+ F+P++C +P Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ W L AW++G TG+PI+DA MRQL+ GWMHNRLRMI ASFLVKDLL Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL VP + IH PH W +K L+YPLPIVDHK+A TL + AAKK Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKK 472 >gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280] Length = 472 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1] Length = 471 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 247/473 (52%), Positives = 326/473 (68%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L Sbjct: 1 MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ KGI + +F S + + C + +V+ L+YN QYE+NE RRD +EK Sbjct: 61 DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +C+ FDDSV+L PGS++ QMYKV+TPF+ A ++ L + + P++R G Sbjct: 121 LKDV-LCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + +FP E++A+ LR+FC+++ Y ++RD PA++GTS+LS Sbjct: 180 AIKVCQPLKLNYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++GVLSPRQC RL E L WLNELIWREFYRHLM F+P +C KP Sbjct: 240 CCLTVGVLSPRQCLRRLLAECSGALEGGAGSV--WLNELIWREFYRHLMTFHPELCRFKP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+ ++W +D L AW++G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 298 FIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR Sbjct: 358 IDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL +VP + +H+P W DK +++YP PIVDH +A TL Y AA+K Sbjct: 418 RWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470 >gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946] Length = 482 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 270/477 (56%), Positives = 341/477 (71%), Gaps = 5/477 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP+QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + FDDS+LLPPGS+L +MYKV+TPF KA ++ L Q LP PA+R + Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180 Query: 186 GPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G + P ++ F +FP GE+ A+ LR+FC++ V Y +QRD+PA GTS Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGLEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF WT ++W D L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL VPT+YIH PH W KN +L+YPLP+VDHK+A TL+ + AA+K Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARKN 475 >gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380] Length = 480 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 276/475 (58%), Positives = 343/475 (72%), Gaps = 1/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW + ++ RQ+ F++ +L Sbjct: 1 MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L+++ I YHQC F DSI WLD +C Q ++ LFYN+QYE NE +RD L + Sbjct: 61 QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L RVIC SF DS+LLPPGS+L +MY+V+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 FDYP Q++D FP GE+ AL LR FC+E+V Y +QRD+PA+ GTS L Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC NRL+ E ++ K GAF WLNELIWREFYRHL+ YP +C + Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKDL Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL+ VP IH P W + L+YP P+VDHK+A TL + AAK+ Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKRD 475 >gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia pyrifoliae DSM 12163] Length = 504 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 265/475 (55%), Positives = 334/475 (70%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 28 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 88 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH + D LL PPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207 Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V F +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 325 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 500 >gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1] Length = 472 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 476 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 269/476 (56%), Positives = 336/476 (70%), Gaps = 2/476 (0%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ H+VW RNDLRITDN+AL+AAC + AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L Sbjct: 1 MTATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L+ K I YHQC++F S +WL +C + VT LFYNRQYE+NE RRD + + Sbjct: 61 QCLVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTE 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L SFDD++LLPPGS++ + +MYKV+TPFR A +Q L +D+RSLP P R Sbjct: 121 LLAGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQ 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + +FP GE+ AL LR FC+E V Y +QRDIPA+ GTS L Sbjct: 181 ACEMSEIKPFDYSQ-QGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GVLSPRQC NRL E D L +SGAF WLNEL+WREFYRHL+ +P +C K Sbjct: 240 SPYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + W+ D L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 300 PFIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FI Sbjct: 360 LINWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +VP IH PH W K L+YP P+VDH A TL + AK+++ Sbjct: 420 RRWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475 >gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 473 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 252/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 473 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1] Length = 472 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 325/475 (68%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR DN AL AAC S A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q +L++KGI +H+ +F S+E + C + RVT LFYN QYE+NE RD +E+ Sbjct: 61 RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIDPAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL E L WL+ELIWREFYRHLM +YPS+C P Sbjct: 240 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 WLPEL +VP + +H P W K ++L+YP PIVDHK+A TL Y A+K + Sbjct: 418 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472 >gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 473 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 473 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y QRD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 473 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 473 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 473 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM 30120] Length = 477 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV HLVW RNDLR+TDNKAL AC + A VI V+IATPEQW H +S RQ F++ +L Sbjct: 1 MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++Q +L+++GI H + F DS++WL + QQ T L++N QYE+NE RD+ L + Sbjct: 61 VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + QH I ++DD++LLPPGS+ MY+VYTPFR+A + L+ +D RS P P R Sbjct: 121 QSQHLNI-LTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P F + P F GE AL LR+FC E+V Y RDIPAI GTSQL Sbjct: 180 ALAVENTHPLFVHQSVE-TSPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GVLSPRQC NRL E + +SG FSWLNELIWREFY HL+ +P +C + Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ I+WN D + AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A TL + A K++S+ Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475 >gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 473 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220] Length = 472 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 251/475 (52%), Positives = 327/475 (68%), Gaps = 4/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+A++IATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F S++ + CLQ V++LFYN QYEINE +RD +EK Sbjct: 61 TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ + + P R +G Sbjct: 121 LPQV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + YP Q D FP E+ A+ LR+FC++ Y ++RD PAI GTS+L Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC NRL E L WLNELIWREFYRHLM ++P++C + Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPALCRHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WTE+++W + LQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDL Sbjct: 298 PFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD G FI Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL NVP + IH P SW + +LNYP PIVDHK+A TL Y AA+K+ Sbjct: 418 RQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472 >gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SI+ + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 473 Score = 368 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 473 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y QRD PA++GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970] Length = 481 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 282/476 (59%), Positives = 345/476 (72%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLR+TDN ALYAAC + A+VIAVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F DSI WLD++C QQ+V LFYN+QYE+NE RRD+ + Sbjct: 61 LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D R +P P R Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + FDYP + D FP GE+ AL LR FC+E+V Y++QRD PAI GTS Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++SPRQC+NRL+ E DLL + SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKRD 476 >gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB] Length = 474 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 267/476 (56%), Positives = 340/476 (71%), Gaps = 3/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +VQ +L+++GI Y C F DSI+ L +C +Q+V +LFYN QYE+NE +RD EKR Sbjct: 61 EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L VIC+ FDDS+LLPPGS+ + MYKV+TPF KA ++ L Q+ +P P R Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P+ + IP F + +FP GE AL LR F + V Y +RD+PA+ TS+L Sbjct: 181 SPLKVTPIPAFDYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ GVLSPRQC +R+ E D L ++ F+WLNELIWREFYRHL+ YP++C + Sbjct: 241 SVYLATGVLSPRQCLHRVLHEHPDALDNSRA--FTWLNELIWREFYRHLLVAYPALCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT +EW ++ AWK G TG+PI+DAAMRQ+ +GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 RH+LPEL +VP IH PH W +K+ L+YP PIVDHK A TL+ + AK + Sbjct: 419 RHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474 >gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541] Length = 478 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 264/473 (55%), Positives = 336/473 (71%), Gaps = 2/473 (0%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW HG+S RQ F++ +L+++Q Sbjct: 5 HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+++GI H S F DS +WL Y QQ+V LF+N+QYE+NE +RD+ + + Q Sbjct: 65 RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + D ++ P G + +MY+VYTPFR+A + L+ D RSLP P R + Sbjct: 125 LNVFSYDDAVLISP-GVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPRSEPIII 183 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 ++ P F P + I P F GEQ AL LR FC+E+V Y RDIP+I GTSQLSPYL Sbjct: 184 DNSQPLFPHTPVE-IAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 +IG LSPRQC NRL E + P SG FSWLNEL+WREFY HL+ +P +C +PFI Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT+ I+WN D AWK G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL+DW Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI WL Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A +TL + A K+ S+ Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475 >gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 473 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F] gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides F] Length = 487 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 337/476 (70%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475 >gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103] gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103] Length = 475 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 268/477 (56%), Positives = 333/477 (69%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++GI +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP ID FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS+ Sbjct: 181 TPLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E L + W+NELIWREFYRHL+ +P +C Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALDSGPAAV--WINELIWREFYRHLIVAHPRLCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK + Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475 >gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 473 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969] Length = 481 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 282/476 (59%), Positives = 348/476 (73%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R+DLRITDN AL+AAC + AKV+AVFIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC++F DSI WL +C QQ+V LFYN+QYE+NE+RRD+ + Sbjct: 61 LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C SF DSVLLPPGS+ +MYK++TPFR+A IQ L+ +D RS+P P R Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 FDYP Q++D FP GE+ AL LR FC+E+V Y++QRD+PA+ GTS Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC+NRL+ E DLL SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF+ WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMITASFLVKD Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP + IH P W + LNYP P+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKRD 476 >gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont] Length = 477 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 268/479 (55%), Positives = 343/479 (71%), Gaps = 6/479 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVWLRNDLRI DN AL AAC S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L Sbjct: 1 MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL+++GI +HQC +F S+++L ++C Q +V LFYN QYEINE +RD +EK+ Sbjct: 61 LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + V+C+ FDDS+LLPPGS+ + M+KV+TPF KA I+ L Q P R Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV FDYP + D FP GE+ AL LR+F +++V Y +QRDIPAI GTS+ Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLSPRQC +R+ +E L A WLNEL+WREFYRHLM +P++C Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQALNNG--SALVWLNELVWREFYRHLMVTFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++ L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA--STGNDSVPYFRIFNPTIQGKRFDPQG 422 LL+DWR GE YFM QL+DGDLA+NNGGWQWAA TG D+ PYFRIFNPT QG+RFD QG Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL +VP IH PH+W +KN+ L+YP PIV+HK A TL+ + A+ + Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERARSAA 477 >gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 473 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473 >gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 473 Score = 366 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10] gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516] gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1] gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia pestis KIM 10] gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus str. 91001] gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516] gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92] gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CA88-4125] gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola] gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. IP275] gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Nepal516] gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. India 195] gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis Pestoides A] gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004] gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038] gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27] gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003] gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 487 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96] gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96] Length = 477 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 265/475 (55%), Positives = 334/475 (70%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ +GIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH + D LL PPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V F +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473 >gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis PB1/+] gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+] Length = 487 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp. Ejp617] Length = 477 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 265/475 (55%), Positives = 333/475 (70%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN ALYAAC + A VIA+FIATP QWR H ++ +Q+ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ+SL+ KGIV QC +F S+ L +C + RV +LFYN QYE+NE +RD +E+ Sbjct: 61 DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQH + D LL PPGS+L +MYKV+TPF KA ++ L Q LP PA+R Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180 Query: 186 GPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G V +FP GE+ A+ LR+FC++ V Y ++R++PA GTS Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL+ GVLSPRQC +RL ++ L + F WLNELIWREFYRHL+ +P++C Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSRV--FVWLNELIWREFYRHLLVAFPALCR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF+ WT+ ++W DS L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIRHWLPEL +VP +YIH PH W KN +L+YP P+VDHK A TL+ + AAK Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473 >gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 32953] Length = 487 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis YPIII] gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis YPIII] Length = 487 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC 35316] Length = 470 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 257/473 (54%), Positives = 330/473 (69%), Gaps = 4/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L Sbjct: 1 MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+SL +KGI Y + S+F ++ + + C + VT LFYN QYE NE +RD+ LE R Sbjct: 61 ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A I+ L +A + PA R Sbjct: 121 L-DTVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAARG-E 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P+T F + +FP E+ A+ LR FCK+ Y QRD PA++GTS+LS Sbjct: 179 PLTDLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSRLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++GVLSPRQC +RL E L WLNEL WREFYRHLM ++P +C +P Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPQALDGA--AGAVWLNELTWREFYRHLMTYHPDLCKHRP 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WTE ++W ++ L+AW+ G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDLL Sbjct: 297 FIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR Sbjct: 357 IDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 HWLPELN VP + IH P +W DK ++L+YP P+VDHK+A TL Y AA+ Sbjct: 417 HWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAARN 469 >gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355] Length = 475 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 268/477 (56%), Positives = 332/477 (69%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC DA+VIA+FIATP QW+QH ++ARQ FI+ SL Sbjct: 1 MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL+++G +HQC +F SI++L +C +Q+V KLFYN QYE+NE RD EKR Sbjct: 61 MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120 Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V+C+ FDDS+LLPPGSI +MYKV+TPF KA ++ L Q +P P R Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP ID FP GEQ A+ LR+F K+ V Y +QRD+PA+ TS+ Sbjct: 181 APLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YLS GVLSPRQC +R+ E L + W+NELIWREFYRHL+ +P +C Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALESSPAAV--WINELIWREFYRHLIVAHPRLCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W ++S AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR +LPEL VP IH PH W KN+ L+YP PIV+HK A TL+ + AK + Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475 >gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 473 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473 >gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 480 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 251/473 (53%), Positives = 317/473 (67%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LCDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P +F E+ AL LR FC++ Y QRD PA++GTS+LS Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+P Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 FTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC 33638] Length = 481 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 283/476 (59%), Positives = 342/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A V+AVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI YHQC +F DSI WL+ +C QQ V LFYN+QYE+NE RD+ L + Sbjct: 61 LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C F DSVLLPPG++L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 VTPS FDYP Q +D FP GE+ AL LR+FC+E Y +QRD PAI GTS Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E DLL + GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP IH P W ++ L+YP P+VDHK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKRD 476 >gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044] gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 480 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 250/473 (52%), Positives = 317/473 (67%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q + + LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ IC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P +F E+ AL LR FC++ Y QRD PA++GTS+LS Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+P Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 FTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP + +H P +W DK ++L+Y PIVDHK+A TL + AA+K Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470 >gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP 31758] Length = 487 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 337/476 (70%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L+YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475 >gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 484 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 277/474 (58%), Positives = 342/474 (72%), Gaps = 2/474 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L Sbjct: 1 MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 VQ L++ I YH+C +F D+++WL +C +V KLFYN QYEINE RRD LEK+ Sbjct: 61 AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L H+VIC+ F D+VLLPP +L QMY+V+TPFR+A ++ L +L +PVP R Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V+ S FDYP D FPIGE A L +FC KV Y RD+ AI+GTS L Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G+LSPRQC L+E F + I+ GAF WLNELIWR+FYRHL+ YP + G Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPE-GIEDHKGAFDWLNELIWRDFYRHLLIAYPRLSKGH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++W+ LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHWLPELN VP IH P SW +KN L+YP PIVDH++A TL+ + AK Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAKN 473 >gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320] Length = 476 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 250/473 (52%), Positives = 310/473 (65%), Gaps = 1/473 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +LL Sbjct: 5 PVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLN 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + L Sbjct: 65 LSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 125 AHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQK 184 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F P MFP EQ AL L++FC E+V +Y + RDIPAI GTSQLSP Sbjct: 185 AVSPLSAPLFALPIS-STKMFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG++S RQC+NRL + D L S F W NEL+WREFY+HL+ PS+ F Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAF 303 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDLL+ Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL +VP +YIH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 424 WLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485] Length = 479 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 184/476 (38%), Positives = 242/476 (50%), Gaps = 20/476 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN AL AA S VI VFI S ++ F+ SL + Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTALDG 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + + + L + + + +NR Y V+RD +++ L+ Sbjct: 63 ELRSLGLHLVLRR----GEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRAA 118 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +S+ D+V+ ++ A Q Y VYTP+ K L +R VP + Sbjct: 119 GYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAIPLPA 178 Query: 190 PSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 +P P F GE A L F + Y RD+ AI GTS+LSP Sbjct: 179 SDPLPALNDLLPTAPTSVPRFATGETAARAALEHFIHNAIANYATARDLVAIAGTSRLSP 238 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL GVLSPRQC + G SW+ ELIWREFY ++ +P G F Sbjct: 239 YLRFGVLSPRQCVVAARAAPSG------PGPESWIGELIWREFYIQVLYHFPHALRG-SF 291 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P ++I W D L AW+QG TG+PI+DAAMRQL GWMHNR RMI ASFL KDLL+ Sbjct: 292 KPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTKDLLI 351 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE +FM L+DGD A+NNGGWQWAA TG D+ PYFRIFNP QG++FDP G ++R Sbjct: 352 DWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYVRR 411 Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL VPT+YIH PH + +Y P+VDH L Y +A Sbjct: 412 YVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLRALELYRSA 467 >gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC BAA-894] gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894] Length = 473 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+++GI + +F +++ L ++C +Q+V+ LFYN QYE+NE RRD +E+R Sbjct: 61 ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS++ +MYKV+TP+ +A ++ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T FDYP + D + FP GE+ AL LR+FC+ Y E+RD PAI+GTS L Sbjct: 181 AITDVPGLAPFDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTSLL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+IGVLSPRQC +RL E L WLNELIWREFYRHL+ +P +C + Sbjct: 241 SAYLAIGVLSPRQCLHRLLTEHPRALEGG--SGAVWLNELIWREFYRHLIVAWPHLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 419 RRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua] gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua] gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 485 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 272/476 (57%), Positives = 338/476 (71%), Gaps = 4/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS HLVW RNDLR+TDN AL+AAC + A VIAVFIATP QW HG++ RQ+ F+ +L Sbjct: 1 MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ +GI YHQC +F S WL +C QQ+V LFY++QYE+NE RD L + Sbjct: 61 HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C+SF DSVLL PG++L +MYKV+TPFR+A IQ L+ +D +P P R Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 PV S +P + +FP GE AL LR+FC+E+V Y + RD+PA+ GTS L Sbjct: 181 PPVLLSPLPFDYPQ-QSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +GVLSPRQC+NRL E ++L SGAF+WLNELIWREFYRHL+ YP +C Sbjct: 240 SPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHH 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+ + WN+ L+AW+QG TG+PI+DAAMRQ+N GWMHNRLRMI+ASFLVKDL Sbjct: 300 PFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 360 LIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL VP IH P W ++ L +YP+P+VDHK+A TL + AAK+ S Sbjct: 420 RRWLPELAAVPDSDIHQPWRWAERQHL--DYPVPLVDHKQARLATLAAFEAAKRDS 473 >gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032] gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032] Length = 473 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 258/475 (54%), Positives = 333/475 (70%), Gaps = 3/475 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L Sbjct: 1 MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ +GI + +F +++ L ++C +Q+V LFYN QYE+NE RRD + +R Sbjct: 61 ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ RV C+ FDDSV+LPPGS + +MYKV+TP+ +A I+ L + + P R G Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +T + FDYP + D M FP GE+ AL LR FC+ Y E+RD PAI+GTS L Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLSPRQC +RL E L WLNELIWREFYRHL+ +P +C + Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRALEGG--SGAVWLNELIWREFYRHLIVAWPHLCRHQ 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT ++ W ++ QAW +G TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDL Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+PEL+++P + +H PH W KN +L YP PIVDHK+A TL Y AA+K+ Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473 >gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906] Length = 476 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 250/473 (52%), Positives = 310/473 (65%), Gaps = 1/473 (0%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F TP QW+ H ++ Q FI+ +LL Sbjct: 5 PVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLN 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L++ I + D+ + + YC Q +VT LF+N QY +NE RDK + + L Sbjct: 65 LSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + D+V +PPG+++ +MYKV+TPFR A ++ + D SLP P IR Sbjct: 125 AHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQK 184 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F P MFP EQ AL L++FC E+V +Y + RDIPAI GTSQLSP Sbjct: 185 TVSPLSAPLFALPIS-STKMFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG++S RQC+NRL + D L S AF W NEL+WREFY+HL+ PS+ F Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQIAF 303 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 PWTE I W D AW QG TGFPIIDAAMRQLN GWMHNRLRM+TASFLVKDLL+ Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL +VP + IH P W K L+YP PIVDH KA + Y AKK+ Sbjct: 424 WLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476 >gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342] Length = 480 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 251/473 (53%), Positives = 320/473 (67%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ IC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P +F E+ AL LR FC++ Y QRD PA++GTS+LS Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P L+ GVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+P Sbjct: 240 PCLATGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 FIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22] Length = 480 Score = 359 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 251/473 (53%), Positives = 320/473 (67%), Gaps = 3/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ IC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P +F E+ AL LR FC++ Y QRD PA++GTS+LS Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P L+ GVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+P Sbjct: 240 PCLATGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+K+ W +D LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 FIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL VP + +H P +W DK + L+YP PIVDHK+A TL + AA+K Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470 >gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473] Length = 479 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 276/473 (58%), Positives = 345/473 (72%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W R+DLR+TDN AL+AAC + A+VIAVFIATP+QW H +S +Q+ FI +L Sbjct: 1 MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++L+ + I YHQC +FD S WL ++ +++V KLFYN QYE+NE RRD LE Sbjct: 61 CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ +V C+ + DS+LL PGS+L MYK+YTPFR+A IQ L+ +D + +P P R Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRARGEP 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T + F +FP GE+ AL LR+FC+E V Y +QRD+PAI GTSQLS Sbjct: 181 ITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQLS 240 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IG LSPRQC+NRL+ E D+L +P SGAFSWLNELIWREFYRHL+ YP +C +P Sbjct: 241 PYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHRP 300 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+++ WN D+ LQAW+QG TG+PI+DAAMRQ+N GWMHNRLRMITASFLVKDLL Sbjct: 301 FIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDLL 360 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD G FIR Sbjct: 361 VDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFIR 420 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 HWLPEL VP IH P W + L+YPLP+VDHK+A TL + AA++ Sbjct: 421 HWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473 >gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 481 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 281/476 (59%), Positives = 337/476 (70%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WL +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L HR I C F DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D FP GE+ AL LR FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E +L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRD 476 >gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638] gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638] Length = 470 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 250/473 (52%), Positives = 320/473 (67%), Gaps = 4/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL AAC + A+V+AVFIATP+QWRQH ++ RQ+ ++ A L Sbjct: 1 MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L+++GI Y + S+F + C Q VT LFYN QYE NE +RD+ LEK Sbjct: 61 GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+LPPGS++ +MYKV+TPF+ A ++ L + + PA+R Sbjct: 121 L-DGVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + I + +FP E+ A+ LR FC+ Y +RD P+I GTS+LS Sbjct: 180 LPPSAEIEFNYPQ-QDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++GVLSPRQC +RL E L + WLNELIWREFYRHLM ++P +C +P Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHRP 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT+ ++W D LLQAW+ G TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKDLL Sbjct: 297 FIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDLL 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR Sbjct: 357 IDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFIR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLP L VP + +H P W DK ++L+YP PIVDHK+A TL Y AA+K Sbjct: 417 KWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469 >gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b] Length = 475 Score = 356 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 263/477 (55%), Positives = 333/477 (69%), Gaps = 4/477 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLRNDLRI DN AL+AAC + A+V+A+FIATP QW+QH ++ +Q+ FIY SL Sbjct: 1 MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+++GI Y QC +F S+E L +C QQ+V +LFYN QYEINE +RD EKR Sbjct: 61 LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + VIC+ FDDS+LL PGS+ M+KV+TPF KA ++ L Q P R Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ FDYP + D +FP GE+ AL LR F ++ V Y +RD PA+ GTS+ Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GVLSPRQC +R+ ++ D L + F WLNELIWREFYRHLM +P++C Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDALDGGLA--FVWLNELIWREFYRHLMVAFPALCKH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF+ WT + W K+ L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR WLPEL VP +IH PH W KN+++L YP PIV+HK A TL+ + A+ + Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475 >gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 278/476 (58%), Positives = 336/476 (70%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+AAC + A VIAVF+ATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ + I YHQC +F SI+WLD +C Q +V LFYN+QYE+NE RD L R Sbjct: 61 QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I C SF DSVLLPPGS+L +MYKV+TPFR+A IQ L+ +D S+P P R Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 FDYP Q +D + FP GE+ AL LR FC+E+V Y +QRD PAI TS Sbjct: 181 SMEIVPQPLTPFDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPAIAATSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 RPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP IH P +W + L+YPLP+VDHK A TL + AAK+ Sbjct: 421 IRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAKRD 476 >gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703] Length = 481 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 281/476 (59%), Positives = 340/476 (71%), Gaps = 2/476 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLR+TDN AL+ AC + A VIAVFIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ + I YHQC +F DSI WLD +C QQ+V LFYN QYE+NE RD+ L + Sbjct: 61 LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + HR I C F D+VLLPPGSIL +MYKV+TPFR+A IQ L+ +D RS+P P R T Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V PS FDYP Q +D FP GE+ AL LR+FC+E V Y +QRD PA+ GTS Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G+LSPRQC NRL+ E ++L GAF WLNELIWREFYRHL+ YP +C Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASFLVKD Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G F Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IR WLPEL VP IH P W ++ SL+YP P+V+HK+A TL + AAK+ Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRD 476 >gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 470 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 252/473 (53%), Positives = 324/473 (68%), Gaps = 4/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC + A+V+A+FIATP QW+QH ++ RQ+ ++ + L Sbjct: 1 MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+SL++KGI Y + S+F + + C Q VT LFYN QYE NE +RD+ LE+ Sbjct: 61 ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELERI 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C+ FDDSV+L PGS++ +MYKV+TPF+ A I+ L +A + P+ R Sbjct: 121 LGDV-ECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR-GE 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V F +FP E+ A+ LR+FCK Y +RD PAI+GTS+LS Sbjct: 179 CVNDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSRLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++GVLSPRQC +RL E L WLNELIWREFYRHLM ++P +C +P Sbjct: 239 ACLALGVLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPELCKHRP 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WTE ++W ++ LLQAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDLL Sbjct: 297 FIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVKDLL 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD GTFIR Sbjct: 357 IDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGTFIR 416 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 HWLP L VP + IH P +W DK ++L+YP PIV+HK+A TL Y AA+K Sbjct: 417 HWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARK 469 >gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909] Length = 485 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 279/480 (58%), Positives = 338/480 (70%), Gaps = 6/480 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL+W RNDLRITDN AL+AAC + A VIA+FIATP QW H ++ RQ+ F+ +L Sbjct: 1 MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q +L+ +GI YHQC +F DSI WLD +C QQ+V LF+N+QYE+NE RD L R Sbjct: 61 QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120 Query: 127 LQHRV------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L HR C FDDSVLLPPGS+L +MYKV+TPFR+A IQ L+ ++ R +P P Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 IR + V P + F + +FP GE+ AL LR FC+E+V Y QRD+PA+ Sbjct: 181 KIRDSVAVMPLPLLPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPAVA 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL++GVLSPRQC+NRL E LL GAF+WLNELIWREFYRHL+ YP Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAYPR 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C +PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASF Sbjct: 301 LCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD Sbjct: 361 LVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDS 420 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G FIR WLPEL VP IH P W + L+YPLP+VDHK A TL + AAK+ Sbjct: 421 NGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAKRD 480 >gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827] Length = 483 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 267/482 (55%), Positives = 335/482 (69%), Gaps = 2/482 (0%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ F Sbjct: 1 MAKKQA--CHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +L+ ++ SL++ I +F + +W+ + QQ+V L++N QYE+NE RRD Sbjct: 59 LHQNLIALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRD 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L Q +FDD++LLPP S+ N +MY+VYTPFR+A I LV D RSLP P Sbjct: 119 EWLIHHPQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAP 178 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R F + I P FP GE A LR+FC+ KV +Y + RDIP+I+ Sbjct: 179 QPRGEALAIDDLSLPLFAHHAVDIVPHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIE 238 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL+IGVLSPRQC NRL E+ L P SGAF+WLNELIWREFY HL+ +P Sbjct: 239 GTSLLSPYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPR 298 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C +PFI WT I+WN +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASF Sbjct: 299 LCRHQPFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASF 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDLL+DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDP Sbjct: 359 LVKDLLIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 QG FIR WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A TL + A K Sbjct: 419 QGAFIRQWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSD 478 Query: 481 SL 482 S+ Sbjct: 479 SV 480 >gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131] Length = 480 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 266/474 (56%), Positives = 335/474 (70%), Gaps = 2/474 (0%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ FI+ +L+++ Sbjct: 7 CHLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVEL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q SL++ GI ++F D+ +W+ Y Q+ LF+NRQYE NE +RD+ L + Sbjct: 67 QNSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-P 125 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 H + +FDD +LLPPGS+ +MY+VYTPFR+A + L D RSL P R Sbjct: 126 HGLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAIN 185 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 +P F P + FP GE++AL LR+FC KV Y RDIP+I GTSQLSPY Sbjct: 186 IDKALPLFPHQPIEDFQ-QFPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPY 244 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++GVLSPRQC+NRL+ E +L P SGAF+WLNEL+WREFY HL+ +P +C +PFI Sbjct: 245 LAVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFI 304 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WT+ I WN S AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+D Sbjct: 305 QWTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLID 364 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHW Sbjct: 365 WRKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHW 424 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 LPEL VP +YIH PH W ++ +LNYP PIVDHK+A TL + A K+ SL Sbjct: 425 LPELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478 >gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3] Length = 461 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 247/464 (53%), Positives = 312/464 (67%), Gaps = 3/464 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ IC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L + P R Sbjct: 121 LRDV-ICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +P +F E+ AL LR FC++ Y QRD PA++GTS+LS Sbjct: 180 ARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P L+IGVLSPRQC +RL E L +WLNELIWREFYRHLM +YP +C G+P Sbjct: 240 PCLAIGVLSPRQCLHRLLTEHPAALDGG--AGATWLNELIWREFYRHLMVYYPKLCKGRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F WT+K+ W + LQAW++G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 FTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLR 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FIR Sbjct: 358 LDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 WLPEL VP + +H P +W DK ++L+Y PIVDHK+A T Sbjct: 418 RWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461 >gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 473 Score = 349 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 211/475 (44%), Positives = 283/475 (59%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + + Sbjct: 1 MKLIWFRNDLRLADNPALRHAC-AGDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L C + VT+L+ N+ EI+E+RRD+ + L Sbjct: 60 GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + C + +LPPG +L + +M+KV+TPF +A ++ L + PA R Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179 Query: 188 VTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 R F DP +P+GE A L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNELIWREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTLSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P T + W+ D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL KD Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL +YP P+VDH A + + A +K Sbjct: 420 IRTWVSELADLPAAYLHQPHDWLRLKG-RHDYPAPMVDHAVARVRAIEMFRALEK 473 >gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565] gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565] Length = 473 Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats. Identities = 213/475 (44%), Positives = 289/475 (60%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC D V A+FI +P QWRQH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHAC-AGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + F + L + C +Q VT+L+ N+ EI+E+RRD + L Sbjct: 60 GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 + + C F+ +LPPG +L + +M+KV+TPF +A +++L + P R L Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +DP +P+GE AL L F ++ V Y E RD PAI GTS Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNELIWREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVAVLQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPALSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P T + W+ D AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL KD Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL +YP+P+VDH A + + + +K Sbjct: 420 IRTWVTELADIPPAYVHQPHDWLRLKG-RQDYPVPMVDHAVARVRAIEMFRSLEK 473 >gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13] Length = 498 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 235/472 (49%), Positives = 319/472 (67%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 HLVW R DLR+TDNKAL AAC + DA V A+F A QW +HG+S RQ F++ L ++ Sbjct: 12 HLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFMHRHLEKLS 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + GI H C NFDD+ ++ +C ++++ +F+N QYE+NE RRD+ LE L Sbjct: 72 EGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDRWLEDNLPQ 131 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +DD +LLPPG+ N +MY+V+TPF++ ++ L AD SLP P RL Sbjct: 132 ETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPERRLHVTRI 191 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + FF Y + + GE+ A+ +L FC+EKV+ Y + RD P + GTS++S YL Sbjct: 192 KGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDGTSRVSAYL 251 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 +IGVLSPRQC N L E D + + K G WLNEL+WREFY HL+A +P +C +PF+ Sbjct: 252 AIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRLCRYEPFLE 311 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 WT++I WN + +AW +G TG+PI+DAAMR+L GWMHNRLRMI ASFLVKDLLVDW Sbjct: 312 WTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFLVKDLLVDW 371 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP QG++FDP G ++R WL Sbjct: 372 RKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPAGHYVRRWL 431 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 PEL +VP IH P W KN + L+YP P+VDH++A TLN + A ++++ Sbjct: 432 PELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483 >gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 482 Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 191/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QW H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C + +V + N++Y +NE RRD+ +++ L+ Sbjct: 59 EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + L PGSIL ++V+T F+K L +A R + P + Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V IP F P +A+ ++P GE A + F E++ YY RD PA GTSQ Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + +P V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + +H P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQLHDPSSIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp. salmonicida A449] Length = 473 Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 207/475 (43%), Positives = 281/475 (59%), Gaps = 6/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW RNDLR+ DN AL AC + +V A+F+ +P QW+QH ++ + F+ A + ++ Sbjct: 1 MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K+L+ GI + F + L S + V++L+ N+ EI+E RRD + L Sbjct: 60 GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + C F+ +LPPG +L + +M+KV+TPF +A ++ L + PA R Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179 Query: 188 VTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 R + Y DP +P+GE A L F + V Y E RD PA GTS Sbjct: 180 PWQPLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPAVLDYEETRDFPAQAGTSI 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++SPRQC L++ F WLNEL+WREFYRHL+ P++ M Sbjct: 240 LSPYLAAGIISPRQCVGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTLSMN 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF P T + W+ D AW +G TG+PI+DAAMR L+ GWMHNRLRMI ASFL KD Sbjct: 300 LPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F Sbjct: 360 LHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGDF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR W+ EL ++P Y+H PH WL YP P+VDH A + + +K Sbjct: 420 IRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALARVKAIEMFRNLEK 473 >gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei VT8] Length = 463 Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 188/470 (40%), Positives = 255/470 (54%), Gaps = 9/470 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC + + V A F+ TP+QW +H SA + F+ + Sbjct: 2 TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ G+ + F D + L +C + + +N +Y INE RRDK L RL Sbjct: 61 ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S + P + ++ ++ +L + V Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAAIGNAV 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P A +P+ P GE A L F E+ Y + RD PA+ GTSQLSPY Sbjct: 181 KPEQTDTLPAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLSPY 240 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVLS RQC K+ + G +W+NE+ WR+FY H++ YP V MG+ F Sbjct: 241 LANGVLSGRQCLIAAKQSGLSGE-----GVETWINEIAWRDFYIHILYHYPRVSMGRAFK 295 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 TE + WN +AWK+G TG PI+DAAMRQL GWMHNRLRMITA FL K+L +D Sbjct: 296 EETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLFID 355 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE +FM L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP+G FIR+W Sbjct: 356 WRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIRNW 415 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL + + IH P + YP PIVD K++ + ++ A K Sbjct: 416 VPELAKLDNKRIHDP---SRGGVIPKGYPRPIVDLKESRKEAIARFQALK 462 >gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato Max13] gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato K40] gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato T1] Length = 482 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM 13941] Length = 487 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 239/484 (49%), Gaps = 22/484 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN AL+ A SD +VI +FI A + F+ A+L + Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +G + +++ + + + T + +NR Y RRD +E L+ Sbjct: 64 NLRARGSRLVIRR----GRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDL 119 Query: 131 VICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S + V+ P + + Y VYTP+R+ Q L L P Sbjct: 120 NVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAP 179 Query: 190 ----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK----EKVYYYVEQRDIPAIQG 241 +P D + P GE + L F + Y E RD+ A Sbjct: 180 EAVADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPA 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFYP 299 TS+LSPYL G ++PRQ + + +W+ EL WR+FY ++ YP Sbjct: 240 TSRLSPYLRFGCVAPRQALRAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHYP 299 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + F P + + W D L AWK+G TG+PIIDAAM QL WMHNR RMI AS Sbjct: 300 HVVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVAS 358 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP QG++FD Sbjct: 359 FLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFD 418 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P+G ++R +LPEL VP +YIHAP + + +YP PIVDH + L Sbjct: 419 PKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRALAL 478 Query: 474 YYAA 477 Y A Sbjct: 479 YRAV 482 >gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 482 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato str. DC3000] gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 482 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 482 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L S C Q +V L N +Y INE RRD+ +++ +Q Sbjct: 59 EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P +++ ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+PEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 481 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 194/472 (41%), Positives = 269/472 (56%), Gaps = 6/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L + + Q +D + E L + C Q +V L+ N +Y INE RRD ++K L+ Sbjct: 59 EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A A + Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEATHPVRMPAAQQALSI 178 Query: 188 VTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + F P Q + ++P GE A + F E++ YY ++RD PA GTSQL Sbjct: 179 TSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V + Sbjct: 239 SAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHR 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+L Sbjct: 299 AFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G FI Sbjct: 359 LIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + WLPEL N+ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 KRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 469 >gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 467 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 191/471 (40%), Positives = 266/471 (56%), Gaps = 5/471 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H S + F+ A + Sbjct: 2 TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI + Q FDDS+ L+S+C + VT L +N +Y +NE +RDK L+ R Sbjct: 61 AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + P + ++ ++ L V Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNAV 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 +P I + A +P+ GE A L +F +++ Y E+RD PAI GTSQ+SPY Sbjct: 181 SPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISPY 240 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVLS RQC + + G +W+ E+ WR+FY +++ +P V M + F Sbjct: 241 LANGVLSGRQCL--IAGRQAQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAFK 298 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P TE +EWN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA +L K+L +D Sbjct: 299 PETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFID 358 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FIR W Sbjct: 359 WRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIREW 418 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL + ++ IH P + + YP IVD K++ + ++ K Sbjct: 419 VPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELKN 467 >gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 482 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K++ + + + +D + E L + C Q +V L+ N +Y INE RRD+ +++ +Q Sbjct: 59 EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L QA R++ P + Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P + + ++P GE A + F E++ YY ++RD PA GTSQ Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S ++ +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 482 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 482 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470 >gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori str. 301020] Length = 482 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL A ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685] Length = 477 Score = 339 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 239/472 (50%), Positives = 315/472 (66%), Gaps = 2/472 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+ ++ RQ+ FI+ +L Sbjct: 1 MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ + I +++ + + +C Q + T LF+NRQYE+NE RRD+ L Sbjct: 61 CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + C FDD++LLPPG++L A QM+KV+TPF+ A +Q L Q D LP P R Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAPTRRAYP 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P +P F +FP GE A L FC+ + Y +RD PA GTS LS Sbjct: 179 CAPPPVLPTFDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++GV+SPRQC L+ +D G +WLNELIWREFYRHL+ +P +C +P Sbjct: 239 PYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHRP 298 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F+PWT +I W D L+ W+QG TGFP+IDAAMRQLN GWMHNRLRM+TASFLVKDLL Sbjct: 299 FLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDLL 358 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FIR Sbjct: 359 IDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFIR 418 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 WLP L +VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 419 RWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470 >gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 489 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 214/474 (45%), Positives = 295/474 (62%), Gaps = 9/474 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A +S +IA+FIATP QW QH ++A Q FI+ L +++ Sbjct: 12 VIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++ I Q + ++F +S+ +D C +F N+QY INE +RD + + + Sbjct: 71 QLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQRDNSAGELIAKK 130 Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 I S D + P ++L +++KV+TPFR A I+ + + +T Sbjct: 131 GIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVTKDGYIVTSDAV 190 Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + P ++P+ E+ L F + K Y + RD PAI GTS L Sbjct: 191 IKLLSVSNPIKAFNYPIIDSVLWPVDEETIAQRLETFFETKAETYHQNRDFPAIDGTSCL 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL+IG LS RQC +L + F + L I GAF+WLNE++WREFY HL+ YP + Sbjct: 251 SPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFYGHLLHRYPELSQY 310 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF +T ++W D+ LL+AW++G TGFPI+DAAMRQL + GWMHNRLRMITASFL KD Sbjct: 311 QPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHNRLRMITASFLTKD 370 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL DWR+GE++FM L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G F Sbjct: 371 LLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGDF 430 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+ EL +VP +YIH PH W L NYPLPIVDHK+A + + AK Sbjct: 431 IRTWVKELEHVPDKYIHTPHQWASAESL--NYPLPIVDHKEARLIAIESFKQAK 482 >gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 482 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DW GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. B076] gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea str. race 4] Length = 482 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q ++ L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 482 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFDAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 482 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + +D + E L + C Q +V L N++Y INE RRD+ ++K L+ Sbjct: 59 EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + QA + + P + + Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +IP F P +A+ ++P GE A + F ++ YY +RD PA GTSQ Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P S + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470 >gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 489 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 210/474 (44%), Positives = 296/474 (62%), Gaps = 9/474 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A S +IA+FIATP QW QH ++A Q FI+ L +++ Sbjct: 12 IIWFRSDLRVVDNTALNHAIE-SGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++ I Q + ++F +S+ ++ C+ +F N+QY INE +RD + + L + Sbjct: 71 QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130 Query: 131 VICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 I S D + + L +++KV+TPFR A I+ + + + + +T Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190 Query: 187 -PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + ++P+ E+ L FC+ K Y + RD PAI GTS L Sbjct: 191 SKLLSDSSQIKAFNYPIIDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTSCL 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SPYL+IG LS RQC ++L++ F + I GAF+WLNE++WREFY HL+ YP + Sbjct: 251 SPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELSKH 310 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF +T+ ++W D LL+AW++G TGFPI+DA MRQL GWMHNRLRMITASFL KD Sbjct: 311 QPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLTKD 370 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL DWR+GE++FM L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G F Sbjct: 371 LLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGDF 430 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+ EL +VP +YIH PH W + L NYPLPIVDHK+A + + AK Sbjct: 431 IRTWVKELEHVPDKYIHTPHQWASEESL--NYPLPIVDHKEARLIAIESFKQAK 482 >gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC 35110] Length = 477 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 246/482 (51%), Gaps = 17/482 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASL 65 M+ +VW R DLRI D+ AL A +D ++I +FI + R+ S F+ SL Sbjct: 1 MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + S + G + +E L S + R +++N YE RD+ ++ Sbjct: 60 EALALSYANIGGKLIVRR----GQVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQS 115 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + K+F D V P +L Q Y V+TP++K + + I Sbjct: 116 EFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALSGNIPTPQPALTRIST 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ P+ GE L LR F + +Y+Y E RD PA TS Sbjct: 176 PELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDFPATNATSL 235 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L G LS R ++ + G ++++ELIWREFY ++ +P V Sbjct: 236 LSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEKH 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P E ++W + +AWK G TG+PI+DAAMR L GWMHNRLRMI ASFL KD Sbjct: 296 -SFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q ++FDP+G F Sbjct: 355 LLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKGEF 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK---------NDLSLNYPLPIVDHKKACHHTLNQYY 475 IR ++PEL VP +YIH P L K L +YP PIV+HK L Y Sbjct: 415 IRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQREKALRLYK 474 Query: 476 AA 477 A Sbjct: 475 AM 476 >gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 466 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 187/472 (39%), Positives = 266/472 (56%), Gaps = 8/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLRI DN AL AAC +V A FI TP QW++H S + F+ + Sbjct: 2 TQLVWFRNDLRIADNAALTAACKQ-QQQVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI + + F DS+E L+ +C ++ + + +N +Y +NE RRDK ++ L Sbjct: 61 SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + P G+IL + Y V+TPF + + +A P+P + Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKP-VGDT 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P + + GE A L +F + Y RD+P++ GTS LSP Sbjct: 180 VEPPHYEGLSKSFDNPPPRLVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLLSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS +QC + + + G +W NE+ WR+FY +++ YP + M + F Sbjct: 240 YLANGVLSGKQCL--IAARQNQGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHRAF 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P TE ++WN +AWK G TG PI+DAAMRQLN GWMHNRLRMITA FL K+L + Sbjct: 298 KPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNLFI 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G FIR Sbjct: 358 DWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFIRK 417 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PE+ + + IH P + YP P+VD K++ + ++ A K Sbjct: 418 YVPEIAKLDNKRIHQPWV---GGVIPGGYPRPVVDLKESRKEAIAKFQALKN 466 >gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 481 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 193/479 (40%), Positives = 265/479 (55%), Gaps = 8/479 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M L W RNDLR DN ALYAA + ++++IA F+ +PEQWR H ++ + F+ Sbjct: 1 MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L +Q L++ I FD++ L + Q + + L +N ++ +NE RRDK + Sbjct: 61 NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120 Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + F D +LP GSI Y V+TP+++A + Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPEHIELWPEPAKQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++P + + GE AL L F + KV Y EQRD PAI G Sbjct: 181 PSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDGV 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL++GVLS RQC++ + G +W+NELIWR+FY H++ +P + Sbjct: 241 SQLSPYLALGVLSGRQCFH-AAQRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRIS 299 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 M K F TE ++W AW +G TG PI+DAAMRQLN GWMHNRLRMI A FL Sbjct: 300 MTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFLS 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP Q +RFDP G Sbjct: 360 KNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPNG 419 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIRH+ PEL + + IH P L YP+PIVD K + L + K + Sbjct: 420 DFIRHYAPELAELSAKLIHQP---PSDVRSRLGYPVPIVDLKASRERALQAFRELKNST 475 >gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 476 Score = 336 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 205/479 (42%), Positives = 282/479 (58%), Gaps = 12/479 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLR+ DN AL AC + + V+ V+ ATP+ W +H +SA Q+ IY L + Sbjct: 1 MNVVWFRRDLRVEDNTALIEACQSGE-PVVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L + I Y + ++ D +E + + LF+N+QYE +EV+RD + + L+ Sbjct: 60 QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + C + +D LPPGS+LN +KV+TPF++A +Q + L + T P Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179 Query: 188 VTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + R F P + + + LR+F ++KV Y E RD P++ T Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL++G+LS RQC + + G W +ELIWREFY+HL F P + Sbjct: 240 SILSPYLAVGILSIRQC---MARVMYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F PW E + W L+AWK G TG+PI+DAAM+QLN GWMHNRLRMI ASFL+ Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DWR+GE+YFMS+L+DGD +NNGGWQW +STG D PYFRIFNP QG+RFDP G Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FI WLP+L VP +++H P W + L YP PIVDHK TL+ Y AK+ S Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRASQLK--YPAPIVDHKVQRGITLDLYKQAKEYS 473 >gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7] Length = 483 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 232/484 (47%), Gaps = 19/484 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+TDN AL A D +VI V+I PE+ +++ SL Sbjct: 1 MKT-LLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L +G+ Q S+E L + + ++ +NR YE + RD ++++ Sbjct: 58 ALGEDLRARGVDLVIRQ----GASLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQ 113 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPA 181 L+ + I ++ L P ++ YKV+TPF KA + V + PA Sbjct: 114 LRDQGIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPERIQGPA 173 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 G S ++ GE AL L +F E V Y E R+ P G Sbjct: 174 QLPPGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDG 233 Query: 242 TSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +S+LSPYL G + PRQ + + G S+L E+ WREF HL+ +P Sbjct: 234 SSRLSPYLHFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPR 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + D L+AW++G TG P++DAAMR L GWMHNR+RMI AS Sbjct: 294 TSDEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASL 353 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L W G +F L+D DLA N GWQW A G D+ PYFR+FNP +QG+RFDP Sbjct: 354 LTKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDP 413 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474 G ++R W+PEL +P +YIH P + L NYP PIVD ++ L + Sbjct: 414 NGDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRRQALEMW 473 Query: 475 YAAK 478 K Sbjct: 474 EVIK 477 >gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae FF5] Length = 482 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPYPVRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDVVPDQVKGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 482 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 270/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P + + ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50] Length = 452 Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 231/453 (50%), Positives = 308/453 (67%), Gaps = 3/453 (0%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 AC NS A+V+A++IATP QW H +S RQ+ I A L +Q +L++KGI + + +F Sbjct: 2 ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 S+E + C + VT LFYN QYE+NE RD +E+ L++ +C+ FDDSV+LPPG+++ Sbjct: 62 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV-VCEGFDDSVILPPGAVM 120 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 +MYKV+TPF+ A ++ L + + P +R +G + P+ F Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHF 180 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 P+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E Sbjct: 181 PVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQP 240 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 L WL+ELIWREFYRHLM +YPS+C PFI WT++++W + LQAW++ Sbjct: 241 QALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQE 298 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+N Sbjct: 299 GKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAAN 358 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 NGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W Sbjct: 359 NGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQ 418 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 K + L+YP PIVDHK+A TL Y A+K + Sbjct: 419 KAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451 >gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi str. 1704B] Length = 482 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 489 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 220/474 (46%), Positives = 287/474 (60%), Gaps = 9/474 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR DN AL A VIA+F+ATP QW +H ++A Q FI+ L +++ Sbjct: 12 IIWFRDDLRTVDNTALNHAIETG-LPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Q QC++F +S++ + YC Q RV +F N+QY +NE RD+ L L Sbjct: 71 QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130 Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +S D + P +ILN +++KV+TP+R A I+ + T Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAEQSYPVTTNKEVALSDTT 190 Query: 190 P----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++P+ E+ L L FC K Y +QRD PAI GTS L Sbjct: 191 SAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTSCL 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L+IG LS RQC +L + F L + GAF+WLNE+IWREFY HL+ YP + Sbjct: 251 SPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELSKN 310 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 PF +T+ + W + LL+AW+ G TGFPI+DAAMRQL GWMHNRLRMITASFL KD Sbjct: 311 HPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLTKD 370 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL DWR GE++FM L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G F Sbjct: 371 LLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKGDF 430 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+ EL VP +YIH PH W L +YPLPIVDHK+A + + AK Sbjct: 431 IRTWVKELAKVPDKYIHTPHQWDSSGSL--DYPLPIVDHKEARLLAIEAFKQAK 482 >gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae 642] Length = 482 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 191/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K + +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHNPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088] Length = 467 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 193/471 (40%), Positives = 278/471 (59%), Gaps = 4/471 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++ + F++ +L Sbjct: 1 MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L + I C F+D ++ + + C VT L+ N +Y +NE +RD+ + + Sbjct: 61 ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V C D + P G +L Y V++PF++A I+ P P R Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + QA+D +P GE A++ L FC++++ +Y +RD+PA GTS+LS Sbjct: 180 AAVPGSEL--LASDKQAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ GV+SPR C + + + + G +W++ELIWR+FY H++ YP V M + Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F EKI W AW +G TG+PI+DAAMRQL GWMHNRLRM+ A FL K LL Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE +FM L+DGDL +NNGGWQWAASTG D+ PYFRIFNP Q ++FD G FIR Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL + + IH P + L + L+ YP P+V+ K A L + + Sbjct: 418 RFVPELRELSDKDIHMP-APLMRQSLASAYPEPVVELKFARERALAAFKSV 467 >gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae B728a] Length = 482 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K + Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P+ F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 482 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 269/473 (56%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + ++D + E L C Q +V L N++Y INE RRD+ + K ++ Sbjct: 59 EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A ++ P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 482 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L + C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P +A+ ++P GE A + F E++ YY +RD PA GTSQ Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLPEL ++ + IH P D + +YP PIVD K+ L + A Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470 >gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK] Length = 488 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 221/474 (46%), Positives = 286/474 (60%), Gaps = 8/474 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLRITDN AL AC +S VIA++IATP+QW +H ++ Q I LL +Q Sbjct: 7 QLIWFRSDLRITDNTALIHAC-HSGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLVLQ 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L I + ++ E + + Q ++ +F N+Q E NE +RD + + L Sbjct: 66 QQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQALVE 125 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184 + + S D + PG + +KV+TPFR+ + L +A V + Sbjct: 126 KQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLHPI 185 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + + + +P+ E + L+ FC EKV+ Y E RDIPAI GTS Sbjct: 186 TSELLAQSATSVSFSYPEKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDGTSC 245 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC + L+ EF L + GAF WLNELIWREFYRHL Y + Sbjct: 246 LSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKLSRN 305 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF WT KI W L+ W+QG TGFPI+DAAM+QL GWMHNRLRMI ASFL KD Sbjct: 306 QPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFLTKD 365 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP G F Sbjct: 366 LLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPNGDF 425 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+ EL +VP +YIH PH W N L NYP PIVDHK+A + + AK Sbjct: 426 IRKWIKELKDVPNKYIHTPHLWDGANTL--NYPKPIVDHKQARLLAIETFKQAK 477 >gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 472 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 223/478 (46%), Gaps = 26/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL A + + V+ V++ E A +++ SL + + Sbjct: 8 IVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + S L C + +F+NR+YE V RD ++K L Sbjct: 67 SLKGLGSRLVLLR----GSSKSALVELCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLTG 186 + + L+ + + IQNL A +L P G Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKHIQNLSTRTPLAKPDALTTPKSLPKG 182 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + + GE+ A L F K Y + RD P+++G S+LS Sbjct: 183 ESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSVRGVSRLS 242 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +SP Q W+ L + +L ++ WREF HL+ + +P Sbjct: 243 PHLHFGEISPNQIWHALDRKK----------HEPYLRQIAWREFAHHLLFHFKDTP-SEP 291 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P W ++ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI +SFLVK LL Sbjct: 292 LRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASSFLVKHLL 351 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ G +F L+D DLA+N GWQW A G D+ PYFRIFNP QG+RFD GT+ R Sbjct: 352 QPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFDGDGTYTR 411 Query: 427 HWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +P +Y+ P DL NYP+PIVDH KA L+ Y + Sbjct: 412 RWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDAYAEMR 469 >gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 218/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +L+W R+DLRITDN AL C+ S VIA++IATP QW QH ++ Q I L Sbjct: 13 SHNLMWFRSDLRITDNTALSEVCNQS-LPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ I + +FD ++E ++ CL + + N QY +NE RD+ L L Sbjct: 72 LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIR 183 + I +DD L PGS+LN + +KV+TP+ KA ++ Q + Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVEPTAMVGNTHKE 191 Query: 184 LTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L+ + + + Q +P+ ++ L L FC +KV Y +QRD P+ Sbjct: 192 LSQEIEELLAVCGTVQHYDFQYPQVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRDYPS 251 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297 ++GTS LSPYL+IG LS RQC +++ L I + G F W+NELIWREFY HLMA Sbjct: 252 LEGTSTLSPYLAIGALSVRQCLKAVQQVDPSCLEINKECGGFVWVNELIWREFYHHLMAE 311 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 Y +C G+PF +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL GWMHNRLRMIT Sbjct: 312 YKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNRLRMIT 371 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+ W GE +F+ L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT QG+R Sbjct: 372 ASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGER 431 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+G FIR W+PEL +VP +YIH PH W + YP PI+DHK+A + + A Sbjct: 432 FDPEGEFIRKWIPELVDVPNKYIHTPHLW---HGDKKGYPAPIIDHKQARLRAIEVFKNA 488 Query: 478 KK 479 K+ Sbjct: 489 KE 490 >gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1] gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1] Length = 491 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 165/490 (33%), Positives = 230/490 (46%), Gaps = 28/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN AL A S +VI +FI + F+ A+L + Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL +G + + L + +NR Y +RD+ +E L+ Sbjct: 64 SLRARGSRLVVRR----GRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119 Query: 131 VICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + V++ P + + Y VYTP+R+ + Q L + PV Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179 Query: 190 --------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P N + G L + Y + R++ A Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239 Query: 242 TSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 TS+LSPYL G ++PR +E+ + +W+ EL WR+FY Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V F P + +EW D L AWK+G TG+P++DAAMRQLN WMHNR Sbjct: 300 ILWHHPHVLRS-AFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467 QG+ FDP+G ++R +LPEL VP +YIHAP + + +YP P+VDH + Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478 Query: 468 HHTLNQYYAA 477 L Y A Sbjct: 479 ARALALYRAV 488 >gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 477 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 236/482 (48%), Gaps = 18/482 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+TD L AA V+ VFI P + + +++ SL + Sbjct: 4 TTIFWFRQDLRLTDLPGLCAAAER--GAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q S+ +G + + L + + + ++ +RQY+ + L + L Sbjct: 62 QASIEARGGELILRR----GAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETLT 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184 I K + ++L PGS+L YKV+TPF +A +Q+ + RS+P + Sbjct: 118 DEGIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVR 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + V N+ + ++ GE+ A L F V +Y + RDIPA TS+ Sbjct: 178 SESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SPRQ W+ + L + +L+E+ WRE + + + Sbjct: 238 LSPHLKFGEISPRQIWH-AAQYAKQRLPEAAESIDKFLSEIGWRE-FCYTLLDQFPEMPN 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KPF + W L+AW++G TG+PI+DA MR+L G+MHNR+RMIT SFL K Sbjct: 296 KPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL WR GE +F L+D D+ASN WQW A +G D+ PYFRIFNP QG++FD G + Sbjct: 356 LLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEY 415 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PE+ N+P +YIH P L YP PIVDHK A L Y K Sbjct: 416 VRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYEEVK 475 Query: 479 KQ 480 Sbjct: 476 NS 477 >gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43] gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43] Length = 484 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 240/484 (49%), Gaps = 23/484 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RNDLR+ DN AL AA S +V+ V+I P I + +++ SL ++ Sbjct: 12 AIVWFRNDLRVNDNAALLAAS--SHKQVVPVYILEPA-ANTRAIGGARKWWLHHSLAKLG 68 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ G + D + + +++NR+Y+ + D L+ L+ Sbjct: 69 EKLADLGAPLMLMR----GDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRA 124 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIR 183 + I L P + YKVY+PF +A+ + A R + Sbjct: 125 QDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPDRLTALANAP 184 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + ++ + + + + GE A L +F E+V Y RD+P ++ TS Sbjct: 185 QSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVESTS 244 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L+ G ++P Q LK D + E+ WREF HL+ P + Sbjct: 245 RLSPHLANGEITPAQIIQALKASDADAS---PKDRTVFRKEVGWREFSYHLLVNEPDLPQ 301 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W D L AW++G TG+PI+DA MR+L GWMHNR+RM+TASFL K Sbjct: 302 QNH-NSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFLTK 360 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+VDWR GE +F L+D D ASN WQW A +G D+ PYFR+FNP IQG++FDP G Sbjct: 361 HLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPDGD 420 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R ++PEL N+P+++IH P + D L YP+PIVDH++A + L Y Sbjct: 421 YVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAAYEKI 480 Query: 478 KKQS 481 K + Sbjct: 481 KDAA 484 >gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina NK-01] Length = 478 Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 190/472 (40%), Positives = 266/472 (56%), Gaps = 7/472 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLR+ DN AL A + IA+++ TP+QW++H + + F +L ++ Sbjct: 3 QLMWFRSDLRVQDNTALSQAMNRGAT--IALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K+L++ + QC ++ D + C + + + N +Y INE RD+ + L Sbjct: 61 KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I + PGS+L + ++VY+ FRK + L A + P + V Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180 Query: 189 TPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP F P +++ ++P GEQ AL L +F E+V +Y ++RD PA GTSQL Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ G+LSPRQC + G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W L AW++G TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FDP G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R W+PEL + + IH P S L YP PIVD ++ L + Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAFKNL 471 >gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586] Length = 469 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 211/474 (44%), Positives = 283/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL AA + D V+AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MRLVWLRRDLRCVDNSALSAAIASGD-PVVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L++ + Y Q ++F D+ E + + ++F NR YE++E +RD E+RL Sbjct: 60 QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184 + I D + PPGS+ + +KV+TPF++A + L Q PA++ Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLS-LFQPPTIVKNSPALKGIIP 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + +P+ + + LR FC+E+V Y + RD PA GTS Sbjct: 179 SELTDWIWNSEQAFDYERVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMGVLGEGAQVWLSELIWREFYQHLVAREPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F W +EW D Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL + + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 417 IRRWVPELRGLSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS] Length = 499 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 167/494 (33%), Positives = 249/494 (50%), Gaps = 28/494 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN ALY A +V+ VF+ + R+ FI SLL+ Sbjct: 13 PKGLMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLE 71 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q L +++ + + V +F NR E + + RD + L Sbjct: 72 LQAELGALSGGLIVRHSH----AVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGAL 127 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAI 182 + I ++ DS + +L Q Y V+TP+++A + ++ A+ Sbjct: 128 ANAGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADAL 187 Query: 183 RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +P + F+ + + +L + E++ Y E R+ PA++ Sbjct: 188 VPPPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFFERIDRYDEARNFPAVR 247 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S + +L G +S RQ + + + GA +WL+ELIWR+FY ++ +P Sbjct: 248 GPSYMGVHLRFGTVSIRQVASVAHQLSLQGNA----GAATWLSELIWRDFYFQILTHFPH 303 Query: 301 VCMG---KPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 V K F P +KI+W+ H Q AW +G TG+P++DAAM Q+N G+MHNRLR Sbjct: 304 VHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLR 363 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR GE YF L D +LASNNGGWQWA+S+G D+ PYFRIFNP Q Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQ 423 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 +RFDP+G FIR +LP+L + IHAP + L YPLP+VDH +A Sbjct: 424 SERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEARE 483 Query: 469 HTLNQYYAAKKQSL 482 TL +Y A+ ++L Sbjct: 484 KTLQRYGVARAKAL 497 >gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002] Length = 469 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 249/479 (51%), Gaps = 20/479 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L W R DLR+ D+ ALYAA +S+ +V+ VF+ + + R+ FI+ SL++ Sbjct: 3 TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L G ++ + + + + ++ +R YE RD + +RL Sbjct: 62 LKEQLCALGSDLVV----VSGRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAVAERL 117 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIR 183 +H ++ D V+ +L + Y V+TP+R A ++ L S Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYLNRL 177 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 TP + + + + +++ +Y + RD PA +G S Sbjct: 178 ARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDFGQRIEHYQQWRDFPAAKGVS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G +S RQ ++ GA +WL+ELIWREFY+ L+ YP V + Sbjct: 238 YLSVHLRFGTISIRQLAQFAWQQGSA-------GATTWLSELIWREFYQQLLWHYPHV-V 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P ++ + D L AW G TG+P++DAAMRQL G+MHNRLRM+TASFLVK Sbjct: 290 EESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRMVTASFLVK 349 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLLVDWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FDP+G Sbjct: 350 DLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEGK 409 Query: 424 FIRHWLPELNNVPTQYIHAPHSW---LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR ++PEL + + IHAP L +YP PIVDH + L + +K Sbjct: 410 FIRRYVPELAALDNKAIHAPWQAKVLPGGFLLGRDYPRPIVDHAEQRTQALALFGQRQK 468 >gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC 12472] Length = 471 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 168/478 (35%), Positives = 238/478 (49%), Gaps = 25/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR DLR+ D+ A Y A +S+A V+ VF+ R+ FI+ S + Sbjct: 7 TALVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAAL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+Q G + + +F NR YE RD + +RL Sbjct: 66 KAELNQLGGDLLIRHGL----PQHEIPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLA 121 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIR 183 + + + D V+ +L A + + V+TP++ A ++ L A + A+ Sbjct: 122 EQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALM 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P + ++ P G A L ++ Y QRD P ++G S Sbjct: 182 PREPQSMPSLADIGFLPSDLASLPVKAGAAGAEA-LFADFAGRIERYKAQRDFPGVKGVS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L G LS R+ + + GA +WL+ELIWR+FY+ ++ P Sbjct: 241 YLSVHLRFGTLSIRRLAAYAWHDGGE-------GAMTWLSELIWRDFYQQVLWHRPDAAK 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F P + + + D AW++G TG+P++DAAMRQLN G+MHNRLRM+ ASFLVK Sbjct: 294 H-AFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASFLVK 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE+YF +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP G Sbjct: 353 DLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPDGR 412 Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PEL +P + IHAP L +YP PIVDH L + Sbjct: 413 FIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRELALALFK 470 >gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum centenum SW] Length = 489 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 161/482 (33%), Positives = 235/482 (48%), Gaps = 19/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ DN AL A S V+ VF+ + +++ SL + + Sbjct: 7 LVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSLASLSR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL+ G + + + + + +NR YE RD L+ L+ Sbjct: 66 SLATAGSPLVLRR----GRADVAIGELVRETGAGTVLWNRCYEPWATERDSRLKADLRAA 121 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRL 184 + KSF+ S+L P ++ A + Y+V+TPF +A+ + A R P Sbjct: 122 GVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTAPA 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ + + + GE LR F + Y E RD P GTS+ Sbjct: 182 SDPLESWGLLPTTPDWAGGLRQAWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDGTSR 241 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +SPRQ W ++ + S+L EL WREF +L+ +P Sbjct: 242 LSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAESFLRELGWREFCYNLLYHFP-KLP 300 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P P E W DS L +W++G TG+PI+DA MRQL T GWMHNR+RMI SFLVK Sbjct: 301 ERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVK 360 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+ W+ G+ +F L+D DLA+N GWQW A G D+ PYFR+FNP +QG +FDP G Sbjct: 361 HLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFDPDGR 420 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R W+PEL +P IH P + + L +YP P ++HK+ L + Sbjct: 421 YVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDRALAAFATL 480 Query: 478 KK 479 ++ Sbjct: 481 RQ 482 >gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1] Length = 466 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 169/476 (35%), Positives = 235/476 (49%), Gaps = 25/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W+R DLR+ D+ AL A +VI VFI ++ ++++ F+++ L Sbjct: 1 MTTILWWIRRDLRLHDHPALEYALQ--KGRVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ + L ++G + + + L + ++ Y RRD + + Sbjct: 57 QLDEDLRKRGSQLIIRR----GEPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L F + PP +L Y V+TPF +A + Sbjct: 113 LP----LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAWKALPFASPSVVSLPERFPAVP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P FP GE AL L F Y + R+ GTS LS Sbjct: 169 -----DKLVSLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLS 223 Query: 247 PYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PY G+LSPR + K + K G +WLNELIWREFY ++ YP V Sbjct: 224 PYFRFGMLSPRWAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHVLAM- 282 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P IEW LQAWK+G TG+P++DAAMRQL GWMHNR RMI ASFL KDL Sbjct: 283 AFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDL 342 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++W+ GE++FM L+DGD A+NNGGWQW A G D+ PYFRIFNP +Q +FDPQG +I Sbjct: 343 LINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYI 402 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 + W+PEL +VPT++IHAP + + +YP P+VDH++ L Y Sbjct: 403 KTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEAYR 458 >gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 183/480 (38%), Positives = 247/480 (51%), Gaps = 20/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN AL AA + V+ VFI R S ++ F+ L + Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAALDA 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + D + L + + + +NR Y VRRD +++ L+ Sbjct: 63 ELRTFGLHLVVRR----GDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALREA 118 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 SF D+V+ + + Y VYTP+ K L + +P + Sbjct: 119 GYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPLPV 178 Query: 190 PSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 +P A P FP GE AL L +F + + Y + RD+ A+ GTS+LSP Sbjct: 179 SEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTSRLSP 238 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL +GVLSPRQC + G ELIWR+FY ++ +P G F Sbjct: 239 YLRLGVLSPRQCVAAALAAPPGPGPESWIG------ELIWRDFYVQVLYHFPHALRG-SF 291 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P +I+W D L AW+QG TG+PI+DAAMRQL GWMHNR RMI ASFL KDLL+ Sbjct: 292 KPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTKDLLI 351 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE +FM L+DGD A+NNGGWQWAA TG D+ P+FRIFNP QG++FDP+G ++R Sbjct: 352 DWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFDPEGAYVRR 411 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 ++PEL NVPT+YIH PH + +YP PIVDH L Y AA + + Sbjct: 412 YVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDHATQRTKALELYRAATRHN 471 >gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens Pf0-1] Length = 488 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 270/477 (56%), Gaps = 7/477 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P+QW++H + + F +L ++ Sbjct: 8 MQLIWLRSDLRQHDNTALAAAAER--GPSVAVYLLSPQQWQEHDDAPCKIDFWLRNLHKL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 KSL I ++D + L C Q ++ + N +Y INE RRD + K LQ Sbjct: 66 SKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVAKALQ 125 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I S+ D +L PGS+L ++V++ FRK ++L ++ P + Sbjct: 126 AEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGKQSALN 185 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P ++ ++P GE A L F ++ YY +RD PA GTSQ Sbjct: 186 IASDPVPEAIEGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAKPGTSQ 245 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + K GA +W+NEL+WREFY+H++ YP V Sbjct: 246 LSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYPRVSRH 305 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 306 RAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 365 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP Q ++FD +G F Sbjct: 366 LLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFDSEGLF 425 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 I+HWLPEL + + IH P S ++ +YP PIV+ + L + +S Sbjct: 426 IKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAFKNLPSRS 481 >gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa UCBPP-PA14] Length = 481 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 195/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474 >gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341] Length = 469 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 207/473 (43%), Positives = 282/473 (59%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V+AV+IATP QW+QH ++ Q+ FI+ L ++ Sbjct: 1 MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + E + + T++F NR YE++E +RD+ E L Sbjct: 60 QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185 R I + D L PPG + + +KV+TPF++A + + P + Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWLSLFQPPIITKNQPAEPWTLSS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +P+ + + LR FC+++V Y +QRD PA +GTS L Sbjct: 180 EWASWVWNSAQTFDYPRVDSQSWPVDFETIRNQLRDFCRDQVQNYHQQRDFPAREGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRESSMGALSE--GAQVWLSELIWREFYQHLVAIEPNISKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDPQG FI Sbjct: 358 HIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPQGEFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 RHW+PEL ++ YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RHWVPELRSMSAAYIHQPWTYPAVNSVP--YPARLVDHKQEREVTLRLYKTAK 468 >gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1] Length = 481 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCLALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474 >gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14] Length = 475 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 209/477 (43%), Positives = 280/477 (58%), Gaps = 8/477 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A + ++ V A+F+ATP QW++H ++ Q+ FIY L + Sbjct: 1 MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++ + + + + V ++ NR YE NE +RD E+ L Sbjct: 60 QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I D L PG +LN + +KV+TPF++A + + S P A+ Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAVNPLLD 179 Query: 188 VTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + R + +P+ + H LR+FC++ + Y +QRD PA +GTS+L Sbjct: 180 SEHNALWNERQDFAYPRVSSDQWPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG+LS RQC R+ + L+ GA WL+ELIWREFY+HL+ F + GK Sbjct: 240 SPYLAIGMLSVRQCIARMYAQSQSGLLSS--GAEIWLSELIWREFYQHLLVFESKLSKGK 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F W ++++W+ D W +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL KDL Sbjct: 298 AFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DW GE YFM QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP G FI Sbjct: 358 HIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPSGQFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 R W+PEL +VPT YIH P W L YP P+VDHK A TL Y AK + Sbjct: 418 RQWVPELASVPTAYIHTPWKWPGVKSLL--YPSPMVDHKVAREVTLRLYKEAKDNPI 472 >gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130] gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130] Length = 480 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 234/490 (47%), Gaps = 25/490 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T+ + ++W R DLR+ DN AL AA S V+AVF+ + + Sbjct: 1 MSKTSPI---IMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMRWW 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + K L G+ + E + + + +NR+Y E D Sbjct: 57 LHHSLKSLTKDLGALGVDLILRRGPG----AEVIFDLAKEVGAENVVWNRRYGDAEQTVD 112 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ + KS+ ++ P ++ YKVYTPF K + + D P Sbjct: 113 ATIKGDFE--GEAKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQE 170 Query: 181 AIRLTGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 G V N+ + ++ GE A R F + + Y RD Sbjct: 171 IAGFGGDVASDNLDEWDLLPTKPDWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDSARD 230 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +P TS+LSP+L G +SP + W ++ L +W+ EL+WREF HL+ Sbjct: 231 LPGDDRTSRLSPHLRWGEISPYRLWQMAQD---GRLSAGSKARETWVKELVWREFSYHLL 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + F + W D L+AW++G TG+PI+DA MRQL GWMHNR+RM Sbjct: 288 QEWPDLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRM 346 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I SFLVK LL+DWR GE++F L+DGD ASN+ WQW A TG D+ P+FRIFNP +Q Sbjct: 347 IVGSFLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQA 406 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 ++FD G +I+ W+PEL +P +Y+ +P L YP PIVDHK+A Sbjct: 407 EKFDKDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARER 466 Query: 470 TLNQYYAAKK 479 L ++ Sbjct: 467 ALAALQEMRE 476 >gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1] Length = 481 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 195/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474 >gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9] gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9] Length = 469 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 238/472 (50%), Gaps = 19/472 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L WLR DLR+ D+ AL +A S +V+ VF+ S R+ FI+ SL ++Q Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQS-REVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQ 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 L Q G + + E L + + +F + E V RD + +L Q Sbjct: 65 ARLQQHGSTLVCR----YGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I D L +L + V+TP+ +A + L AD+ PV Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK---FCKEKVYYYVEQRDIPAIQGTSQL 245 P+ + +G Q + ++ Y E+RD PA+ TS+L Sbjct: 181 LPAQPLPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLPRLPLYHEERDFPALDATSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LS RQ + + GA +WLNEL+WR+FY ++ P + G Sbjct: 241 SPHLRFGTLSVRQLVRLATDAGHE-------GAQAWLNELVWRDFYHQVLWHRPQLAQGH 293 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++++W ++ AW +G TG+P++DAAMRQL GWMHNRLRMI ASFL KDL Sbjct: 294 AFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKDL 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE +F LLD D A+NNGGWQWAASTG D+ PYFRIFNP Q ++FDP G FI Sbjct: 354 LLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHFI 413 Query: 426 RHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 RH++PEL + + IHAP +YPLP+VDH + L Y Sbjct: 414 RHFVPELARLDAEAIHAPWLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465 >gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2] gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192] Length = 481 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474 >gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 474 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 216/474 (45%), Positives = 287/474 (60%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN A AA NS+ V+A FIATP+ W QH ++ Q+ I L ++ Sbjct: 1 MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ G+ Y + S++ S++ + ++ Q VT + N++YEINEVRRD E+ L Sbjct: 60 QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + DD PGS++N +KV+TP+++A +Q L Q ++ V A+ Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179 Query: 188 VTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 D F+ + + + L LR F KE Y ++RD PAI+GTS+ Sbjct: 180 KVDECDLFSKDCSFRYPTEESQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG LS RQC RL G +WL+ELIWREFY+HL+ F P + G Sbjct: 240 LSPYLAIGALSVRQCMARLL---YQQTAPLSEGRQTWLSELIWREFYQHLLYFEPKLSRG 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+PW + W ++AW+QG TG+PI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 297 ESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G F Sbjct: 357 LQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGEF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL ++P + IH P WL +YP PIVDHK TL Y AK Sbjct: 417 VRRWVPELADLPDKQIHQPSKWLSVK--GSSYPAPIVDHKVQREITLANYKNAK 468 >gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187] Length = 465 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 209/468 (44%), Positives = 284/468 (60%), Gaps = 6/468 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW R+DLR+ D+ ALYAA + + + A++ TPEQW++ ++ ++ I L Q+ Sbjct: 2 TSLVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++L+ GI F +++ L SYC Q V++LF NR I E+ RD ++++ Sbjct: 61 GEALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCD 120 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + FD + PGS+L + +M+KV+TPF KA ++ L + P P+ R Sbjct: 121 ATGIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSAR---- 176 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + +P+GE L L+ FC EK+ Y EQRD PA GTS++SP Sbjct: 177 GGILSWSSVSIDYPRVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISP 236 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G++S RQC ++ L + + F WLNELIWREFY+HL+ +P V K F Sbjct: 237 YLTLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAF 296 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P T+ I W D AW +G TG+PI+DAAMR LN GWMHNRLRMI ASFL KDL + Sbjct: 297 KPETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHI 356 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFM L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ Sbjct: 357 DWRLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQ 416 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 WLPEL VP +YIH PH WL D +YP PIVDH ++ L + Sbjct: 417 WLPELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSESRTIALALFQ 464 >gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3] Length = 487 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 153/495 (30%), Positives = 240/495 (48%), Gaps = 24/495 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++ +VW R+DLR+TDN AL A S + V++ E + + Sbjct: 1 MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLERE--GTRPLGGAARWW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + SL+ G + D E + + + +++NR+Y+ D Sbjct: 58 LDGALRSLDASLAGHGGRLLVLE----GDERETIAALAEELDAGAVYWNRRYDGIARETD 113 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQA 172 L++ L+ I +SF+ ++L P + + ++V+T + +A +++ + Sbjct: 114 GALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLAEPS 173 Query: 173 DLRSLPVPA--IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 R +PA R + + + + E+ AL +L +F +K+ Y Sbjct: 174 TWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPTEEAALELLERFLDKKIRGY 233 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E RD P TS+LSPYL G LS RQ W+ + + +++EL WREF Sbjct: 234 GEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + + + + W D AW +G TG+P++DA MR+L T GWMH Sbjct: 294 DTSLLYHFPELPTRN-YRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D+A+N+ WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464 P QG++FDP+G ++R W+PEL +P IH P L YP PIVDH Sbjct: 413 PVTQGRKFDPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHD 472 Query: 465 KACHHTLNQYYAAKK 479 A L K+ Sbjct: 473 AARQRALGALELTKR 487 >gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506] gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506] Length = 492 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 148/478 (30%), Positives = 229/478 (47%), Gaps = 16/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR+DLR+ DN AL A + ++ + + E + +++ SL Sbjct: 20 VVWLRDDLRLDDNPALALAAET-NRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESFAS 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL KG + D ++ ++ + + LF+NR+Y+ D + + L + Sbjct: 79 SLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDDAIGEALGDQ 134 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLTG 186 V + F ++L P ++ + YKV+TPF + + + + + + Sbjct: 135 VSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDPPDGLKQPDTFPQSD 194 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + I + GE+ A FC + + Y + R+ P TS++S Sbjct: 195 DLEDWELLPTKPDWSGGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDTSRMS 254 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G +SP + W+ + P ++L EL+WR+F HL+ + + Sbjct: 255 PYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLLFHFGPLADKN- 313 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + W L+AW+ G TG+PI+DA MRQL GWMHNR+RMI SFL KDLL Sbjct: 314 FNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFLTKDLL 373 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE +F L+DGD+ASN WQW G D+ P+FRIFNP Q +RFD G +IR Sbjct: 374 IDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKNGAYIR 433 Query: 427 HWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL +P ++IHAP L YP P+VDH +A L+ Y K Sbjct: 434 QFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSAYDEVK 491 >gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58] Length = 481 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 8/474 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G Sbjct: 363 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGE 422 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 423 FIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 474 >gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 482 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 245/483 (50%), Gaps = 22/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ SL + + Sbjct: 10 ILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEALNR 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + +++E L ++ + +F+NR+Y+ + D ++ L+ + Sbjct: 69 SLQKLNGRLVL----ASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARIKHELEKQ 124 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 I LL S L Y+VYTPF +AL + + A + + Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKLRLASQPKS 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P D+ +D P GE+ A L F ++ + Y E RD PA TS Sbjct: 185 EVLGSWKLLPTKPDWAGDFVDLWTP-GEEGAQQRLHVFVEDALEGYKENRDYPARPATSM 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L++G +SP + W+ + + + E+ WREF HL+ +P + Sbjct: 244 LSPHLALGEISPARIWDATRGLSQRVPAA---DIVHFREEIAWREFSYHLLFHFPRLASA 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + EW +S +AW++G TG+PI+DA MRQL GWMHNR+RMI ASFL+KD Sbjct: 301 NW-NDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG++FDP G + Sbjct: 360 LMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDGDY 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PEL + +YIH P L YP PIVDH A + L Y A + Sbjct: 420 VRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNRALAAYKAIR 479 Query: 479 KQS 481 + Sbjct: 480 DAA 482 >gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris DX-1] Length = 483 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 218/482 (45%), Gaps = 21/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+AA S A V+ V++ + ++ SL ++ Sbjct: 11 IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARWWLAQSLRSLEA 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + + L Q + +N L L Sbjct: 70 ELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTMA 125 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184 I L+ P +I + + +V+TPF + ++ + P PA+ Sbjct: 126 GIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPAALRPAPALPG 185 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P D+ P + A ++ Y E RD P TS Sbjct: 186 AQLSDWQLEPTAPDWAGGLRATWRPG--EAAAKTRLADFLARLPGYAEGRDYPDRHVTSG 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +SPRQ W + + +L+EL WREF RHL+A +P + Sbjct: 244 LSPYLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSELGWREFCRHLLADHPDLAAR 302 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P + W D L AW++G TG+PI+DA M +L G MHNR+RM+ SFLVK Sbjct: 303 N-LQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHNRVRMVVGSFLVKH 361 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP +Q ++FD G + Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDADGAY 421 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +P IH P + +L NYP PIVDHK A L+ Y + Sbjct: 422 IRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKAARQRALSAYSELR 481 Query: 479 KQ 480 ++ Sbjct: 482 QR 483 >gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886] Length = 483 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 219/475 (46%), Positives = 281/475 (59%), Gaps = 5/475 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR+ DN AL AC + + VIA++ TP QW+ H ++ Q+ I L+ + Sbjct: 1 MKLVWFRRDLRVKDNVALTEACKSGE-PVIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I + + D + L C Q ++ +F R YE +EV RD + L Sbjct: 60 RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119 Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 FD + PG + N A Y+V+TPF+KA I Q DL + P+ T Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +T + Q +PI + + LR FC+ +V +Y RD PAI GTSQ Sbjct: 180 LTSALLRQPCQIAFRYPQCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IG +SPRQC RL E + + K GA WL+ELIWREFY+H+ A Y V G Sbjct: 240 LSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDVSKG 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K F WT+ IEWN+D Q WKQG TGFPI+DAAMRQLN GWMHNRLRMI ASFLVKD Sbjct: 300 KAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q K+FDP F Sbjct: 360 LHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPNVRF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR WL EL +VP +H PH W +K + L+YP PIVDHK A + + AK Sbjct: 420 IRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAKN 474 >gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72] Length = 503 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 174/492 (35%), Positives = 253/492 (51%), Gaps = 34/492 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65 M+V LVW R DLR D+ ALY A + +V F+ + + R+ FI+A++ Sbjct: 24 MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82 Query: 66 LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ ++L G + E + + V ++ NR YE + Sbjct: 83 VELDRALEALSREAGGSGSGLIVRH----GRAQEAIPALAQALGVDAVYVNRDYEPAAIA 138 Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD+ + +RL + F D V+ +L A Q + V+TP++ A ++ L L++ Sbjct: 139 RDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAY 198 Query: 178 P--VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVE 232 P A RL +P F+ D P G A L ++ Y Sbjct: 199 PIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARA-LFGDFCGRIEDYRI 257 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G + R+ + GA +WL+ELIWR+FY+ Sbjct: 258 ARDFPAVKGVSYLSTHLRFGTIPVRELAAYAVHQGGA-------GAQTWLSELIWRDFYQ 310 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ +P V + F P ++I W+ L AW++G TG+PI+DA MRQL G+MHNR Sbjct: 311 MILWHHPRVVD-QAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMHNR 369 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 370 LRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPV 429 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 Q ++FDP+G FIR ++PEL VP ++IHAP + +YP P+VDH A Sbjct: 430 TQSQKFDPEGRFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALA 489 Query: 467 CHHTLNQYYAAK 478 TL ++ K Sbjct: 490 RERTLARFAVTK 501 >gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25] Length = 481 Score = 326 bits (834), Expect = 8e-87, Method: Composition-based stats. Identities = 190/473 (40%), Positives = 268/473 (56%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA + AV++ TPEQW H + + F +L + Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQR--GPIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + +D + L C + V + N +Y I+E RRD + K L+ Sbjct: 59 SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S+ D + PGS+L ++V++ FRK L A R + P + Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F+ P QA+ ++P GE A L F +++ YY ++RD PA GTSQ Sbjct: 179 LKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLPEL + + +H P + ++ +YP IVD KK+ L + + Sbjct: 419 IKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAFRSL 470 >gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris CGA009] Length = 483 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 213/482 (44%), Gaps = 21/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+AA S A V+ V++ + ++ SL ++ Sbjct: 11 IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + L Q + +N L L Sbjct: 70 ELRALGGALILRRGPT----AAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVA 125 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184 I L+ P +I + + +V+TPF + ++ + P PA+ Sbjct: 126 GIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAVPT 185 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P D+ P + A Y E RD P TS Sbjct: 186 EQLSDWQLEPTAPDWAGGLRQTWTPG--EAAAQTRLAAFLAMQPGYAEGRDYPDRHITSG 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SPRQ W + + +L+E+ WREF RHL+ +P + Sbjct: 244 LSPHLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSEVGWREFCRHLLFDHPDLASR 302 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P + W D +L AW++G TG+PI+DA MR+L G MHNR+RM+ SFLVK Sbjct: 303 N-LQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP +Q ++FD G + Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +P IH P + L NYP PIVDHK L+ Y + Sbjct: 422 IRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAYAELR 481 Query: 479 KQ 480 ++ Sbjct: 482 QR 483 >gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1] Length = 489 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 150/486 (30%), Positives = 229/486 (47%), Gaps = 24/486 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R+DLR+TDN AL A S ++ V++ + + ++ +L + Sbjct: 12 ALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERD--GTRPLGGAVRWWLDGALRSLD 68 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ +G + D E + + + +++NR+Y+ D L++ L+ Sbjct: 69 AKLAAQGGGLVVLE----GDERETIAALAGELGAGAVYWNRRYDGLARETDAALKRSLKE 124 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV-------QADLRSLPVPA 181 I + L P I + ++V+T + +A A R +P Sbjct: 125 AGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPAKWRFHRLPE 184 Query: 182 IRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P A + + E+ L L F +++ Y + RD P Sbjct: 185 ALARRATRIDALGLLPVRPDWAGGLREAWEPSEEGGLARLEAFLDKQIRGYGDARDRPDR 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSPYL G LS RQ W+ + + + +L+EL WREF L+ +P Sbjct: 245 PATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELGWREFNTSLLYHFP 304 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + M + + + W D AW +G TG+P++DA MR+L GWMHNR+RM+TAS Sbjct: 305 ELPMRN-YRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMHNRVRMVTAS 363 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL+K LL+DWR GE +F L+D D+A+N+ WQW A +G D+ PYFRIFNP +QG++FD Sbjct: 364 FLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFNPVMQGRKFD 423 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R W+PEL +P IH P L YP PIVDH A L Sbjct: 424 PDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARKRALGA 483 Query: 474 YYAAKK 479 A K+ Sbjct: 484 LEATKR 489 >gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus flagellatus KT] Length = 481 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 165/486 (33%), Positives = 248/486 (51%), Gaps = 24/486 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR D+ ALY A +S+ +V+ F+ + R+ FI+ S+ Sbjct: 1 MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L ++G + E + + V ++ NR YE V+RD + ++ Sbjct: 60 ELKLALQERGGDLLVRH----GKATEEIPALASVLGVECVYCNRDYEPAAVKRDDTVSQQ 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182 L + I KSF D V+ I+ + + V+TP++ A ++ L Sbjct: 116 LGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHH 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P + + + + L + E++ Y + RD PA++G Sbjct: 176 LAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDFSERMPRYRDARDFPALKGP 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS +L G +S R ++ GA +WLNEL+WR+FY ++ +P V Sbjct: 236 SYLSVHLRFGTVSIRHLARTAWQQGGA-------GAETWLNELLWRDFYFQVLYHHPQVA 288 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F P E I + L +AW +G TG+P++DAAMRQ+N G+MHNRLRM+ A FLV Sbjct: 289 EGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVAAGFLV 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FDP+G Sbjct: 349 KDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEG 408 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FIR ++PEL + IHAP + +YP P+VDH L+ Y Sbjct: 409 KFIRKYVPELQPCDDKEIHAPWLIPPLRQQALGLVIGKDYPAPVVDHAMRREQVLSLYRQ 468 Query: 477 A--KKQ 480 A +K+ Sbjct: 469 ASSRKK 474 >gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris] Length = 471 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + D E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRK----GDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L R I + L P +I N +KV+TP+ K Q N+ + + I Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T + GE+ A L +F + Y +RD PA TS Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP L+ ++ + +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGI 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + D N + YP PI+DH++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 492 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 177/498 (35%), Positives = 246/498 (49%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + R+ Sbjct: 1 MQKGLVWLRRDLRLYDNAALHYALKESK-QVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ L Q+ + L ++G F +E + V +F N YE + + Sbjct: 60 VDFIWQGLEQIDEELRKQGGGLIVR----FGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115 Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ ++ L I F D V+ IL ++ ++ ++TP++ ++ L + DL + Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175 Query: 177 LPVPAIR------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 A + I+ P G + L F Y Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLPRIDQYQ 235 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 V RD PAI+G S LS +L G+LS R + GA WL+ELIWR+F Sbjct: 236 V-GRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGS----MGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W + L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL VDWR GE YF L D +L+SNNGGWQWA+S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIV 461 IFNP Q ++FDP+G FIR +LP+LN++ + IHAP L +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisA53] gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisA53] Length = 483 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 223/481 (46%), Gaps = 18/481 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R+DLR++D+ AL AA +S V+ +++ + + ++ SL +Q Sbjct: 9 SLVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQ 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + LS++G + + + + + ++YN L L Sbjct: 68 QILSERGATLMLRR----GAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAATLAD 123 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRL 184 I +L P +I + +V+TPF K ++ A P P Sbjct: 124 HGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAKPLPAPTALGPPPAAA 183 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + + GE A L F + Y RD P GTS Sbjct: 184 SDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRPGTSL 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + PRQ W+ + +L+EL WREF RHL+ + + Sbjct: 244 LSPHLRFGEIGPRQIWHAAR-FAAAARPAIAGDVDKFLSELGWREFCRHLLFDHSDLATR 302 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P + W +D L+AW++G TG+PI+DA MRQL G MHNR+RM+ ASFLVK Sbjct: 303 N-LQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVASFLVKH 361 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++F L+D D SN G WQW A G D+ PYFR+FNP +QG++FDP G + Sbjct: 362 LLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFDPDGAY 421 Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PEL +P IH P + L NYP PI++H++ L Y + Sbjct: 422 VRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGRERALAAYATVR 481 Query: 479 K 479 K Sbjct: 482 K 482 >gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas manganoxydans SI85-9A1] Length = 483 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 149/478 (31%), Positives = 225/478 (47%), Gaps = 16/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR+DLR+ DN AL A +S V+ + + E + +++ SL K Sbjct: 11 VVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCFGK 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ KG + + E + T L NR+Y+ D +E L Sbjct: 70 DLADKGAPLILRR----GKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSD 125 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTG 186 V + F ++L P + YKVYTPF K L ++ + + + + Sbjct: 126 VEVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRSD 185 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++ I + +GE A +F E + Y + RD P TS++S Sbjct: 186 RLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPDGRDRPGDDATSRMS 245 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +SP + W+ + P ++ EL+WR+ + + + + Sbjct: 246 PHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRD-FNYHLLHNFGPLATQN 304 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + W L+AW++G TG+PI+DA MRQL GWMHNR+RMI SFL KDLL Sbjct: 305 YNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNRVRMIVGSFLTKDLL 364 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE +F L+DGD+ASN WQW +G D+ PYFR+FNP Q +RFD G +IR Sbjct: 365 IDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPVTQSQRFDGDGDYIR 424 Query: 427 HWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL ++P + +HAP +L YP PIVDH A L+ Y K Sbjct: 425 RFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTARKRALDAYGEVK 482 >gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+] gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+] Length = 734 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 258/486 (53%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR TDN AL+ A + +IA++I +P+ + H + + F+ +L Sbjct: 243 VHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVRVDFMLRTLEI 302 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L+ I + + + + LF N +YE++E+RRD + + L Sbjct: 303 LKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDELRRDARMARLL 362 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R + D+ ++PPG + + + Y VYTP+ + ++++ + V + Sbjct: 363 AKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRHVHENLDLLELVESPTKNP 422 Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 T + F+ P + ++P GE A+ L KF + + Y + Sbjct: 423 ESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSKFADQAIGKYQQ 482 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFY 291 R+IP+ GTS LS + + G LS R + L G +W+ E+ WR+FY Sbjct: 483 NRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQTWIREVAWRDFY 542 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM KPF P IEW+ + AWK+G TGFPI+DAAMRQL ++GW+HN Sbjct: 543 KHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAMRQLRSMGWVHN 602 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 603 RCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 662 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL V + IH P+ + YP IVDHK A T Sbjct: 663 LLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKHIVDHKGARERT 722 Query: 471 LNQYYA 476 L Y Sbjct: 723 LAAYKK 728 >gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756] Length = 481 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 168/475 (35%), Positives = 246/475 (51%), Gaps = 17/475 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A +S V+ ++I E + A ++ SL + + Sbjct: 16 IVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLDKSLKSLAQ 73 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G + + + LD+ + T + +NR Y+ V RD ++ RL+ Sbjct: 74 ELEKLGNRLVLRK----GVAADVLDALIAETGATGVVWNRLYDKASVDRDATIKARLKEA 129 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVPAIRL 184 + C+SF+ +L P ++ N + Q YKV+TP+ +A Q+L A + Sbjct: 130 GVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVLRCLDKAVR 189 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P+ ++ + D P GE A L F + Y E+RDIP+ TS+ Sbjct: 190 SEPLAAWDLHPTRPDWSKGFDLWTP-GEAGARARLDAFLSGPITGYGEKRDIPSAPATSR 248 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + PRQ W + + P + A +L+EL WREF ++ +P + Sbjct: 249 LSPHLHFGEIGPRQVWLAARNA-AEAGDIPTAEADKFLSELGWREFNHSILFHWPQLPAR 307 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P + W KD +AW +G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K Sbjct: 308 N-FKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKH 366 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE +F L+D DLA+N G WQW A +G D+ PYFRIFNP QG++FDP+G + Sbjct: 367 LMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEKFDPRGDY 426 Query: 425 IRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R W+PEL VP IH P Y PIVDH KA L Y++ Sbjct: 427 VRRWVPELKTVPDDVIHKPWERPLHLSPAARRIYAKPIVDHAKARERALEAYHSL 481 >gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016] Length = 476 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 277/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + E + C + + + N++Y +NE RRD+ + +RL+ Sbjct: 59 QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHA 178 Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTSQ Sbjct: 179 LASDPLPDAVPAFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFPALPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF TE + W + L+AW+QG TG IIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G F Sbjct: 359 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IRHWLPEL + + IH P S ++YP P+VD K + L + Sbjct: 419 IRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAFRNL 469 >gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2] Length = 485 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 145/487 (29%), Positives = 220/487 (45%), Gaps = 22/487 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYAS 64 + +VW R+DLR++D+ AL AA ++ A +I +++ + +HG + A ++ S Sbjct: 6 ATAIVWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAAQWWLANS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L + G + D+ E L + +F+ E R + + Sbjct: 65 LRALDTDLKKLGQHLVLRR----GDAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVA 120 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L+ + S LL + + ++ + V + Sbjct: 121 EALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRAQGEPPRPLAAVRKLPP 180 Query: 185 T------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + + GE A L F + Y E RD P Sbjct: 181 PVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAIKGYAEGRDFPG 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +SPRQ ++ + + +L+EL WREF RHL+ + Sbjct: 241 KDHASHLSPHLRFGEISPRQVFHAARFA-AERHPALSRDIEKFLSELGWREFCRHLLFDH 299 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + W +D+ L+AW+QG TG+PI+DA MR+L G M NR+RM+TA Sbjct: 300 PDLHRHN-LQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGAMQNRIRMVTA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+DWR GE++F L+D D SN G WQW A G D+ PYFRIFNP +QG++F Sbjct: 359 SFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 DP G ++ W+PEL+ +P IH P L YP PIVDHK A L Sbjct: 419 DPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVDHKDARERALA 478 Query: 473 QYYAAKK 479 Y ++ Sbjct: 479 AYRRTRR 485 >gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 474 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 239/482 (49%), Gaps = 24/482 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW+R DLRI D+ AL AA VI ++I +P++ + +++ SL Sbjct: 3 KVTIVWMRQDLRIEDHPALDAAAQR--GSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKS 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L G+ + S++ L + +F++R+YE ++RD ++ +L Sbjct: 61 LENDLRSLGLPLIIRK----GKSLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKL 116 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAI 182 + KSF +VL P SI N + ++V+T F K + + + + Sbjct: 117 SEEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKEQPLAPLSAPIGVKGKIV 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + I + G A L F + + Y E+RD P + G Sbjct: 177 EVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPGV 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL G +S R W+ + ++ +L +L WR+F HL+ +P Sbjct: 237 SRLSPYLHFGEISVRMVWDEIVKKLGFQEA------EPYLRQLGWRDFAYHLLYHFPKTP 290 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P W ++ LL+ W++G TG+P +DA MRQL GWMHNR RM+ SFLV Sbjct: 291 E-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFLV 349 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+ W+ G ++F L+D DLA+N GWQW A +G D+ PYFRIFNP QG++FDP+G Sbjct: 350 KDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPEG 409 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +++R W+PE+ N+P ++IH P L YP PIV+H +A L + Sbjct: 410 SYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAFEE 469 Query: 477 AK 478 K Sbjct: 470 IK 471 >gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 475 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 185/468 (39%), Positives = 271/468 (57%), Gaps = 6/468 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+WLR DLRI DN AL AA + A+FIATPEQW+QH ++ Q FI L + Sbjct: 1 MNLMWLRRDLRIDDNPALIAALQS--GPTQALFIATPEQWQQHDMAPIQVDFIERHLNLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI N+ L +C Q+++++F N++ E + + L Sbjct: 59 AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVE---LNECIRDRQILA 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ V++P G++ M+ V+TPFR A ++ L Q +++ P+ LT Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTH-Y 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + +P+ H++ +F + K Y + RD PA++GTS +SPY Sbjct: 175 QSIRAEKIVLEATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+IG LS + +++ + +L K+ F WLNEL WR+FY+HL+ YP++ G F Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W + AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K LLVD Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE++FM L+DGD ++NNGGWQWAA TG D+ PYFRIFNP Q ++FDP G+FIR + Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 LPEL+NVP +YIH PHS+L S Y IV+H +A L Y Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQARQIALAFYKQ 462 >gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris TIE-1] Length = 483 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 146/482 (30%), Positives = 215/482 (44%), Gaps = 21/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+DLR+ D+ AL+AA S A V+ V++ + ++ SL ++ Sbjct: 11 IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + L Q + +N L L Sbjct: 70 DLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVA 125 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184 I L+ P +I + + +V+TPF + ++ + P PA Sbjct: 126 GIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAPPS 185 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P D+ P + A + Y + RD P TS Sbjct: 186 DQLGDWQLEPTAPDWAGGLRQTWTPG--EAAAQARLSDFLAGLPGYADGRDYPDRHITSG 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SPRQ W + + +L+EL WREF RHL+ +P + Sbjct: 244 LSPHLRFGEISPRQVWYAARFAAAERPAIAP-DIDKFLSELGWREFCRHLLFDHPDLATR 302 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 P + W D +L AW++G TG+PI+DA MR+L G MHNR+RM+ SFLVK Sbjct: 303 N-LQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE++F L+D D SN G WQW A G D+ PYFR+FNP +Q ++FD G + Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PEL +P IH P + +L NYP PIVDHK L+ Y + Sbjct: 422 IQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALSAYAELR 481 Query: 479 KQ 480 ++ Sbjct: 482 QR 483 >gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255] Length = 581 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 172/488 (35%), Positives = 251/488 (51%), Gaps = 19/488 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ D++ALYAA +I +++ +PE W H S + F +L + Sbjct: 94 VHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARVDFTLRTLKR 153 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L + I + C Q L+ N +YE++E+RR+ L + Sbjct: 154 LQQDLGELDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDELRREAKLVRLC 213 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + D+ ++ PG++ + + Y VYTP+ ++ + L + Sbjct: 214 ADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYLEVSEEPGSNP 273 Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 FFD + + ++P GE AL L F +EK Y E Sbjct: 274 GNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNFLEEKGKEYEE 333 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R + + + TS LSPY + G LS R K + + G +W++EL WR+FY+ Sbjct: 334 TRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWISELAWRDFYK 393 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P IEW D QAW G TGFPI+DAAMRQL WMHNR Sbjct: 394 HVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWMHNR 453 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RM+ +SF KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 454 TRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP+G +I+HWLPEL +V + IH P++ N YP PIVDH ++ L Sbjct: 514 RQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIVDHAESRDRAL 573 Query: 472 NQYYAAKK 479 ++ A K Sbjct: 574 ERFKKALK 581 >gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6] Length = 480 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 185/473 (39%), Positives = 266/473 (56%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+WLR DLR+ DN AL AA V AV++ TPEQWR H + + F +L ++ Sbjct: 1 MHLIWLRTDLRLHDNTALAAASQR--GPVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + + + C + V + N +Y I+E RRD + ++L+ Sbjct: 59 SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D +L PGS+L ++V++ FRK L A R + P + Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +P+ F+ P + ++P GE A L F ++++ YY ++RD PA GTSQ Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + + G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIF+P Q ++FD G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLPEL + + +H P + ++ +YP IVD KK+ L + + Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAFRSL 470 >gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7] Length = 477 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 194/474 (40%), Positives = 271/474 (57%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR +DN AL AA +A+++ +P QWR+H + + F +L ++ Sbjct: 1 MNLVWFRCDLRTSDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I C ++ + L C + + + N++Y NE RRD+ + + L+ Sbjct: 59 QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIR 183 + + D + PGS+L ++V++ FR+ + L QA R P P R Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQPRPQPQPPHR 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L + F P + ++P GE A LR F ++ + Y EQRD PA+ GTS Sbjct: 179 LLPGDPLPDAVPGFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDFPALPGTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILVGYPRVSR 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAMRQL GWMHNRLRM+ A FL K Sbjct: 299 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP Q KRFDP+G Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSKRFDPRGE 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWLPEL + + IH P ++YP +VD K + L + Sbjct: 419 FIRHWLPELAGLERKAIHDPSRLGLFA--GVDYPQSMVDLKASRERALAAFRDL 470 >gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99 Alcoy] Length = 471 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 161/478 (33%), Positives = 248/478 (51%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + +I ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + +E + Q + +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRK----GSPLEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L + I + L P +I N +KV+TP+ K Q N+ + + I Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T + GE+ A L +F + Y +RD PA TS Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP L+ ++ + +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASLEHFLSELGWREFSVYLLYHFP-KLD 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + + + + YP PI+DH++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDANASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015] Length = 486 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 204/480 (42%), Positives = 284/480 (59%), Gaps = 12/480 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R+DLR DN+AL A ++A +IA +IATP+QW +H +SA Q FI L + Sbjct: 9 VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ I F+ C +F E L C + +LF NR+Y +NE++RD+ + + L+ Sbjct: 69 QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I FDD LL PGS+ YKV+TPF+K + L +AD+ P I P Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188 Query: 188 VTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + ++ ++P GE AL L F + ++++Y ++RD P +G Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL+IG LSPR GA +W++EL+WR+FY+H++ +P V Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ F P TE I W D QAW +G TG PI+DAAMRQL GWMHNRLRM+TA FL Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE+YF QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP QG+RFD Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 G FIRH++PEL ++P +Y+H P + D + L +YP PIVD K + + + A + S Sbjct: 429 GAFIRHYVPELKDLPNKYLHEPWTHPDADQL--DYPQPIVDLKLSRQRAIEVFRQASEHS 486 >gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25] Length = 471 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 164/481 (34%), Positives = 253/481 (52%), Gaps = 27/481 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPEQWRQHGISARQSHFIYASLLQ 67 +VW R D R+ DN AL AA VI VF + PE ++ + ++Y SL+ Sbjct: 5 SIVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPE--KEWQLGGASQWWLYYSLIS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ G+ + +D ++ L + +++NR+YE ++ D ++ L Sbjct: 62 LKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + I SF+ ++L P +I N + ++V+TPF ++ +P + G Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKFVG 177 Query: 187 PVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + +I + + ++ G ++A +L+K + Y++ RD+P GT Sbjct: 178 QLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHDGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL G +SPR W +KE GA +L ++ WREF HL+ +P Sbjct: 238 SLLSPYLHFGEISPRMIWQAVKENSTSK------GAEGYLRQIGWREFAHHLLYHFPETP 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 KP W D L+AW++G TG+PIIDA MRQL IGWMHNR+R+I SFLV Sbjct: 292 Q-KPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSFLV 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL++ W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP QG++FDP+G Sbjct: 351 KDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDPEG 410 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +++ W+PEL N+P +++H P ++ +L +NYP PIV+H KA L Y Sbjct: 411 NYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAYSR 470 Query: 477 A 477 Sbjct: 471 L 471 >gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. viciae 3841] Length = 483 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 155/483 (32%), Positives = 244/483 (50%), Gaps = 21/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN+AL AA H S +I ++I P + A Q+ +++ SL + + Sbjct: 10 ILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLHHSLEALNR 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++ +++E L ++ + +F+NR+Y+ + D ++ L+ + Sbjct: 69 SLQKRHGRLVL----ASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQ 124 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 I LL S L Y+VYTPF +AL + ++A + Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAELRLTSQLPT 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + ++ GE+ A L F ++ + Y E RD PA TS Sbjct: 185 SETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVEDALEGYKENRDYPARPATSM 244 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L++G +SP + W+ + + + E+ WREF HL+ +P + Sbjct: 245 LSPHLALGEISPARIWDATRGLSQRVPAA---DIVHFRKEIAWREFSYHLLFHFPRLASA 301 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +EW DS +AW++G TG+PI+DA MRQL GWMHNR+RMI ASFL+KD Sbjct: 302 NW-NDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG++FDP G + Sbjct: 361 LMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPNGDY 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++ ++PEL + +YIH P L YP PIVDH A + L Y A + Sbjct: 421 VKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRALAAYSATR 480 Query: 479 KQS 481 + Sbjct: 481 DAA 483 >gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217] gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans OS217] Length = 497 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 195/488 (39%), Positives = 268/488 (54%), Gaps = 22/488 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 L+W RNDLR+ DN AL AAC KV AV++ TP+QW+ H ++ Q FI Sbjct: 15 PNSLMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRH 74 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +SL GI FDD+ L Y + ++ +F + E+ + Sbjct: 75 LELLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFA---GKEPEINEQRRDN 131 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + LL PG++LN + MYKV+TPF K Q + A ++ LPVP Sbjct: 132 ALIASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQ--IAASMQILPVPVPAP 189 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G P FD P ++ + GE A IL +F + V Y RD PA +GTS+ Sbjct: 190 VGSAITQIAPIVFDCPMRSSEAW-QAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSR 248 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++SP+QC + + F + L+ S A +WLNEL+WREFYRHL+ +P + MG Sbjct: 249 LSPYLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMG 308 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F + I+W D AW +G TG+P++DAAMRQLN GWMHNRLRM+ ASFL K Sbjct: 309 HNFNALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKH 368 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE+YF QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P Q +FD F Sbjct: 369 LLIDWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEF 428 Query: 425 IRHWLPELNNVPTQYIHAPH-------------SWLDKNDLSLNYPLPIVDHKKACHHTL 471 I+ ++PEL+ V + IH + + S YP PIV+H A + Sbjct: 429 IKRFVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAI 488 Query: 472 NQYYAAKK 479 A KK Sbjct: 489 EVLSALKK 496 >gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis HTCC2503] Length = 478 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 245/480 (51%), Gaps = 19/480 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++WLR DLR DN A+ A S A V+ +++ + A Q +++ SL ++ Sbjct: 6 ILWLREDLRFDDNPAMREAA-ASGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G + E + + + + + +F+NR+Y + D ++ LQ Sbjct: 65 DLETRGGALILRR----GKETEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQDM 120 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVPAIRL 184 I S + +L P I + YKVYTP+ K+L Q + + P++ Sbjct: 121 GIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQKEGPRAALPRTDKLNAPPSLPS 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + N+ + +P++ GE+ A LR + Y + R+ P TS+ Sbjct: 181 TDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDRTSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SP W+ + + I G S+L+E+ WREF L+ ++P++ Sbjct: 241 LSPHLHFGEISPVVLWHSVSDAMEAGDIPKDQG-TSFLSEIAWREFSYQLLYYHPTM-RD 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +P + EW+ D L AW++G TG+PI+DA MRQL T GWMHNR+RMI SFLVKD Sbjct: 299 QPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFLVKD 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR G +F L+D D A+N WQW A G D+ P+FRIFNPT Q ++FDP G + Sbjct: 359 LLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPDGAY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PEL ++PT++IH P L YP PIVDH L++Y A K Sbjct: 419 IRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSRYEAIK 478 >gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107] Length = 476 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 186/475 (39%), Positives = 272/475 (57%), Gaps = 10/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVW RNDLR+ DN ALY A V+AV++ + I+ + FI LL + Sbjct: 2 TALVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+Q I + + + L + Q + K F+N +Y ++E+ RD + + L+ Sbjct: 61 VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + K D V++PPG I + YKV+T F++ +Q ++ L+ L +P + Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPM 180 Query: 188 VTPSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + ++ ++P GE A L F + + +Y ++RD PA+QGT Sbjct: 181 PVKPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG LSPRQ + + + + +GA W++ELIWREFY+H++ +P VC Sbjct: 241 STLSPYLAIGSLSPRQAISSVL-CYTQGDWESNAGASCWISELIWREFYQHVVVDFPQVC 299 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + TE W KD W QG TG P++DAAMRQL GWMHNRLRM+ A FL Sbjct: 300 KHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVAMFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L +DWR+GE +FM L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP Q +RFDPQG Sbjct: 360 KNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERFDPQG 419 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL +VP +YIH P + DK+ SL YP P+VD ++ T+ + Sbjct: 420 DFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTIALFSQL 472 >gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens] Length = 471 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 165/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLCLVLRK----GAPQEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLA 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L R I + L P +I N +KV+TP+ K Q N+ + + I+ Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFMLTKRPRGIK 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T + GE+ A L +F + Y +RD PA TS Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP L+ ++ + +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-QTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + D + + YP PI+DH++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 495 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 173/491 (35%), Positives = 244/491 (49%), Gaps = 21/491 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R DLR D+ ALY A +V VF+ + + R+ FI SL+Q Sbjct: 8 SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEFIRESLVQ 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + E + + ++ V LF N E + RD + RL Sbjct: 67 LDASLRDLSGHRHGGLIVRHGVAAEEVPALAVRLGVQALFANHDDEPAALERDDRVRHRL 126 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180 + ++ D + +L Y V+TP++ A ++ + L + PV Sbjct: 127 GAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 186 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A R G + +D + L +++ Y E RD PA++ Sbjct: 187 APRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFLQRIDQYGEARDFPAVK 246 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS +L G LSPR+ E GA +WL+ELIWR+FY ++A +P Sbjct: 247 GPSYLSVHLRFGTLSPRRAARAAHERMRQGST----GAATWLSELIWRDFYFQVLAHHPQ 302 Query: 301 VCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V G F P + I W + AW +G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 303 VAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVV 362 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++ Sbjct: 363 ASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRK 422 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471 FDP+G FIR +LP+L +P +++HAP L NYP PIVDH +A TL Sbjct: 423 FDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDHDEARQKTL 482 Query: 472 NQYYAAKKQSL 482 +Y K ++ Sbjct: 483 ARYAVVKSEAA 493 >gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1] Length = 635 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 258/486 (53%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI+DN+AL A + +IA++I +P+ + H + + F+ +L Sbjct: 144 VHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSV 203 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 +++ L++ I + + + + L+ N +YE++E R +++ Sbjct: 204 IKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIKDF 263 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + D+ ++PPG + A + Y VYTP+ K I ++ + Sbjct: 264 AENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPPEKNP 323 Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F+ + + ++P GE A L KFC+E++ Y E Sbjct: 324 DSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIGNYHE 383 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IPA TS LS +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 384 KRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAWRDFY 443 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQ+NTIG+MHN Sbjct: 444 KHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIGYMHN 503 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR GE+YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 504 RCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 563 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL ++ + IH P++ YP PIV HK Sbjct: 564 LLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDCRERA 623 Query: 471 LNQYYA 476 L Y Sbjct: 624 LAAYKE 629 >gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71] Length = 482 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 155/485 (31%), Positives = 246/485 (50%), Gaps = 17/485 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ ++W R DLR+ D AL AA + +V+ ++I + + +++ SL Sbjct: 1 MTDTVILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGASRWWLHHSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + + +G + + S E L C T ++ +R+YE +K+L + Sbjct: 60 SALARDIEDQGGKLIFRR----GKSREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHE 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAI 182 L + I K + ++L PG+++ + YKV+TPF +A ++ + + Sbjct: 116 DLGNSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWSTF 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + + + GE A L F +E V Y ++RD PA + + Sbjct: 176 TKSDALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVS 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G LSPRQ W +++ ++ K + E+ WREF HL+ F+P + Sbjct: 236 SRLSPHLHHGELSPRQVWAMCEQKKLETPASEK-AIKKFQAEIGWREFSYHLLHFFPEIP 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F W D L+ W+QG TG+PI+DA MR+L G MHNR+RM+ ASFL Sbjct: 295 E-KAFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVASFLC 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL WR GE++F L+D D+ASN WQW A +G D+ PYFRIFNP QG++FD G Sbjct: 354 KHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFDKHG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R W+PE+ +P +Y+H P + L +YP PIVDHK+A L+ Y Sbjct: 414 DYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALDAYED 473 Query: 477 AKKQS 481 K + Sbjct: 474 IKGSN 478 >gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 474 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 235/484 (48%), Gaps = 25/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V ++W R DLR+ DN AL AAC K++ ++I +++ SL Sbjct: 4 PVSIMWFRQDLRVKDNPALNAACDM--GKIVPIYIFDESAPDGRMPGGASKWWLHHSLKS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 + K L Q + D + + +F+NR YE ++ RDK + + Sbjct: 62 LNKRL---NGHLQIFK----GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPA 181 L SF+ S L P +L Y+V+TP+ K + + + Sbjct: 115 LGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYAD 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + I + GE A L F + Y + RDIP+ +G Sbjct: 175 VDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +SP Q W +K+ F ++L+EL WREF +L+ +P++ Sbjct: 235 TSRLSPHLHFGEVSPNQVWYAIKDRF---GTSEDKSIETYLSELGWREFSYYLLFHFPTL 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI SFL Sbjct: 292 P-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++FD + Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R + PELN + +YIH P +L +YP PIVD K + L+ + Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQ 470 Query: 476 AAKK 479 K+ Sbjct: 471 TLKE 474 >gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride] Length = 629 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 256/486 (52%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR +DN++L A + +I V+I +P+ + H S + F+ +L Sbjct: 138 VHWFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSV 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 ++ L+ I D + + LF N +YE++E R +++ + Sbjct: 198 LKDDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQF 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + + D+ ++PPG + + + Y VYTP+ +A + ++ + Sbjct: 258 AENNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNP 317 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 T FD P + ++P GE A+ L KFC E V Y + Sbjct: 318 GATRRTFKTLFDCPIPDAPKNKQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP GTS LS +L+ G +S R C ++ L G W++E+ WR+FY Sbjct: 378 RRNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P IEW+ + +AW +G TGFPI+DAAMRQLN +G+MHN Sbjct: 438 KHVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR+GE+YFM L+DGD ASNNGGW ++AS G D PYFR+FNP Sbjct: 498 RCRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + IH P++ YP IVDHK A Sbjct: 558 LLQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERA 617 Query: 471 LNQYYA 476 L+ Y Sbjct: 618 LSAYKD 623 >gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001] gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp. CCGE1001] Length = 499 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 177/495 (35%), Positives = 255/495 (51%), Gaps = 37/495 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS----AR 56 + LVW R DLR TDN ALY A + + +V VF+ ++W+ R Sbjct: 12 NTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQAQDR 70 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + FI SL ++ ++L +G + D + + Q +V +F N YE Sbjct: 71 RVEFILGSLRELDEALRAQGGGLVVL----YGDPADLVPKLADQLQVDAVFINHDYEPAA 126 Query: 117 VRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + RD+ + +RL +F D V+ +L + + V+TP++ A ++ L DL+ Sbjct: 127 IERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTSFDLK 186 Query: 176 SLPVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 PV ++ + + P + P G + A +L F Sbjct: 187 PYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLTRLDS 246 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E+RD PA++G S LS +L G +S R + L GA +WL+ELIWR Sbjct: 247 YA-ERRDFPAVKGPSYLSVHLRFGTVSIRTL---ARLAHEMSLQPDGRGAATWLSELIWR 302 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNT 345 +FY ++A +P + G F +++ W + AW +G TG+P+IDAAM QLN Sbjct: 303 DFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAMLQLNR 362 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAASTG D+ PY Sbjct: 363 TGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCDAQPY 422 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459 FRIFNP Q ++FD G FI+ +LP+L +P ++IHAP + L NYP P Sbjct: 423 FRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAPWLAGAQRLAEFGVALGDNYPAP 482 Query: 460 IVDHKKACHHTLNQY 474 IVDH +A TL ++ Sbjct: 483 IVDHAQARARTLARF 497 >gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223] Length = 469 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 205/473 (43%), Positives = 274/473 (57%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ I Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185 + I S D + PPGS+ +KV+TPF++A + P Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P+ + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 EFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM 43160] Length = 454 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 152/478 (31%), Positives = 216/478 (45%), Gaps = 28/478 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M L+W R DLR+ D+ AL A + D V+ VF+ P W + F+ Sbjct: 1 MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWG--PSGLPRRQFLLDC 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + G D L + + + RD +E Sbjct: 59 LADL-------GAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVE 111 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L + ++ + P G + ++V++PF +A ++ + P Sbjct: 112 RALGDVPLVRTGSPYAVTP-GRVTKSDGTPFRVFSPFARAWREHGWRDP-----APRPDA 165 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + P + P GE A R+F E++ Y R+ P GTS+ Sbjct: 166 VPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNTPGSDGTSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL G + PR L++ D A S+ NEL WR+FY ++ P Sbjct: 226 LSAYLKYGCVHPRTLLADLEDLDSD-------SADSFRNELAWRDFYADVLWHRPESARE 278 Query: 305 KPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 AW +G TG+PI+DA MRQL ++HNR+RMI ASFLV Sbjct: 279 PLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRVRMIIASFLV 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDWR G YFM L+DGDLASNN GWQW A TG D+ PY+R+FNPT QG+ FDP G Sbjct: 339 KDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTRQGREFDPDG 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++R W+PEL +VP +++H P D + YPLPIVDH + L +Y + + Sbjct: 399 DYVRRWVPELRDVPARHVHEPWLAPD--GVPDGYPLPIVDHAEERRVALERYEQVRDR 454 >gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2] Length = 486 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 147/493 (29%), Positives = 234/493 (47%), Gaps = 23/493 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A + +VW R+DLR+ DN+AL AA ++ ++ V+I + + Sbjct: 1 MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + + ++ KG ++ L + + + R+Y E+ D Sbjct: 60 LHHSLQALGQDIAAKGGRLDLF----CGEARRILPALAEAAGARIICWTRRYGGPEMAVD 115 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADL 174 L+ + + + KSF+ +L P I + VYTP+ +A + A Sbjct: 116 AALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPD 175 Query: 175 RSLPVPAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 R P R T + + + + GE A L+ F + ++ Y Sbjct: 176 RLPAAPIPRGALRTTSIEALALLPEKPDWAGGLRAAWRPGENGAQERLKAFLEGEIASYS 235 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +R+ P+ S+LSP+L G + PRQ + ++ + + + G +L EL WREF Sbjct: 236 LERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAA---QKGGVKFLAELGWREFN 292 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL ++P + + L AW++G TG+P+IDA MR+L G+MHN Sbjct: 293 YHLSFYHPDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYMHN 352 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ ASFL+K LL+DWRIGE +F L D D A+N WQW A +G D+ PYFRIFNP Sbjct: 353 RVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIFNP 412 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465 +QG++FD G ++R W+PEL +P ++IH P + +L NYP PIVD + Sbjct: 413 VLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAE 472 Query: 466 ACHHTLNQYYAAK 478 L + K Sbjct: 473 GRARALAAFEKVK 485 >gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio furnissii NCTC 11218] Length = 475 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 211/473 (44%), Positives = 275/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ + Y + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185 + I FDD ++PPGS+ N +KV+TPF++A + +++ P Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +P+ LR FC+E++ Y +QRD PA GTS L Sbjct: 180 ALQSLLWCESQPFTHPRVSSDAWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQDGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ F P + K Sbjct: 240 SPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLSELIWREFYQHLLTFEPKLSKSK 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG++FDPQG FI Sbjct: 358 HIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL VP +IHAP +W N L YP PIVDHK TL Y AK Sbjct: 418 RQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468 >gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599] Length = 484 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 173/484 (35%), Positives = 250/484 (51%), Gaps = 18/484 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ D+ AL+AA D +I V+I + ++ H ++++ + Sbjct: 2 TAIVWFRRDLRLHDHAALHAAMLTGD-PIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAAL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127 +L Q G + + + L + KLF+NR Y + +RD+L+ + L Sbjct: 61 DDALVQLGGRLLIRR----GEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLS 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-----PVPAI 182 +H V + D VL PG I+ Y V+TP+R+ Sbjct: 117 RHGVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPTEWILFDRLK 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L P+ + P M GE+ A L++F +Y Y E+RD+P + T Sbjct: 177 ELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKRDMPGVNAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L+ G LS R ++R++E + + ++L ELIWREFY+ ++ F+P Sbjct: 237 SRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQVLYFHPH-T 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 ++P E++ W L W QG TG+PI+DAAM+QLN GWMHNRLRMITASFL Sbjct: 296 TNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRLRMITASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLLVDWR G YF QL+D D A+N GGWQW+ASTG D+ PYFRIFNP QG++FD G Sbjct: 356 KDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDRDG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 F++ +LP L VP QYIH P + + +YPLP VDH + + + Sbjct: 416 VFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRRKLAMALFQE 475 Query: 477 AKKQ 480 AK + Sbjct: 476 AKDR 479 >gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10] Length = 499 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 162/483 (33%), Positives = 236/483 (48%), Gaps = 19/483 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ DN AL+AA S ++ FI P+ Q +++ SL + + Sbjct: 11 LVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSR 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ Q+G + D+ L C + +++F+NR D L RL R Sbjct: 70 SIRQRGGQLVLRR----GDTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADR 125 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185 + + F L P + LN + + Y+V+TPF KA ++ LP A+ + Sbjct: 126 GVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLRAPEPSAALPAPDRLPGAAVTAS 185 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ + GE AL+ L F ++ Y + RD P GTS+L Sbjct: 186 DNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTSRL 245 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L+ G +SPR W+ +++ G +L+EL WR+F +L + S + Sbjct: 246 SPHLAWGEISPRTIWHTVRDHAERGGSFQ--GGEKFLSELGWRDFAIYLAHHFGS-LRDE 302 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + W + L AWK+G TG PI+DA MRQL T GWMHNR+RMITASFL+K L Sbjct: 303 NFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITASFLIKHL 362 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V WR G +F L+D DL N WQW A +G D+ PYFRIFNP QG+RFDPQG ++ Sbjct: 363 GVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFDPQGLYV 422 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL + + +HAP + L YP P+ D K L+ Y K Sbjct: 423 HRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGREQALDAYQTMKA 482 Query: 480 QSL 482 ++ Sbjct: 483 RAA 485 >gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] Length = 481 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 235/479 (49%), Gaps = 18/479 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R LR++D+ AL+AA S A VI ++ E + ++ SL +Q Sbjct: 7 VVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSLRALQD 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + S + + + + +++N + +E L Sbjct: 66 ELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAI 121 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRLT 185 + + F D +L+ P + + +V+TPF K ++ +PV P+ + Sbjct: 122 GVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALGDPPKPLPVPVRLSSPSGVAS 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V + + + GE+ A L KF + V Y RD P I+ TS+L Sbjct: 182 LTVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPDIEATSRL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SPRQ W+ + + G +L+EL WREF RHL+ P + Sbjct: 242 SPHLRFGEISPRQIWHAARFA-AEQQPAFARGIDKFLSELGWREFSRHLLFNNPDLATRN 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + W++D+ L+AW++G TG+PI+DA MR+L G MHNR+RM+ AS LVK L Sbjct: 301 -LQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG++FD GT++ Sbjct: 360 LIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDSSGTYV 419 Query: 426 RHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +P IH P + L +YP P+VDH+ L Y + + Sbjct: 420 RRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALAAYASLR 478 >gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5] gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB5] Length = 487 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 139/498 (27%), Positives = 221/498 (44%), Gaps = 29/498 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55 M T V +VW R+DLR++D+ AL+ A S +I +++ + + + Sbjct: 1 MPNNTPRPV-IVWFRDDLRLSDHPALHQAA-ASGGPLICIYVFDEDSAQLRSPQARPLGG 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ SL + SL ++G + + + Q + + +N Sbjct: 59 ASRWWLAQSLRALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWNEIEIAP 114 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 L + L I LL + + + L Sbjct: 115 HRAVADDLAEALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLGDPPKL 174 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------Y 228 +PA + + + + + +P + G + + ++ + Sbjct: 175 ---LPAPKTLSAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTPGEGAAQDNLTAFLDALP 231 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E RD P TS+LSP+L G +SPRQ W + + +L+EL WR Sbjct: 232 GYTEGRDRPDCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIAG-DIDKFLSELGWR 290 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF RHL+ +P + + W D+ L AW++G TG+PI+DA MR+L G Sbjct: 291 EFCRHLLHDHPDLAERN-LQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGV 349 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNR+RM+ ASFLVK LL+DWR GE++F L+D D SN WQW A +G D+ PYFR+ Sbjct: 350 MHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRV 409 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 FNP +QG++FDP G ++R W+PEL ++P ++IH P + L NYP PI+D Sbjct: 410 FNPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIID 469 Query: 463 HKKACHHTLNQYYAAKKQ 480 H+ L Y ++ Sbjct: 470 HRVGRERALAAYAKTRQH 487 >gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451] Length = 469 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 204/473 (43%), Positives = 275/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++ATP+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185 + I S D + PPGS+ + +KV+TPF++A + P Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWNVPN 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P+ + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 EFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSIL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRESEMSALSE--GAQVWLSELIWREFYQHLVAIEPNISKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468 >gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC BAA-450] Length = 471 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 213/476 (44%), Positives = 274/476 (57%), Gaps = 13/476 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLR DLRI DN AL A + V+ ++ ATPE W +HG++ Q+ IY L + Sbjct: 1 MNLVWLRRDLRIEDNSALVNAVETGE-PVVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L I Y + + +S + + ++ N++YE+NE RRD LE L Sbjct: 60 KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182 I KS DD + PGSI+N +KV+TPF+KA + L + + + Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQVRKPQVACSSRL 179 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 F YP + D Q+ + LR F + V Y RD PAI GT Sbjct: 180 PEHLSSLLFADDVTFSYPREPSDQFA-ADTQSIIQTLRDFDSQDVEGYASNRDFPAIAGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLSPYL+IG LS RQC RL G W +ELIWREFY+HL+ F + Sbjct: 239 SQLSPYLAIGALSVRQCMARL---MFGQAPPLSQGREVWQSELIWREFYQHLIYFEAKLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ F+ W +++ W + ++AWKQG TGFPI+DAAM+QLN GWMHNRLRMI ASFLV Sbjct: 296 KGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMIVASFLV 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDPQG Sbjct: 356 KDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPQG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+R WLPEL VP +Y+H P W LS YP PIVDHK TL Y AK Sbjct: 416 EFVRQWLPELAQVPDKYLHQPWKWSGVRSLS--YPPPIVDHKVEREVTLRLYKEAK 469 >gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina ymp] Length = 477 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 196/475 (41%), Positives = 271/475 (57%), Gaps = 7/475 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R+DLRI DN AL A S IA+++ TP QW++H + + F +L + Sbjct: 3 QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+ + QC +++ + + C Q V + N +Y INE RD+ + L Sbjct: 61 RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I L PGSIL + ++VY+ FRK ++L A + P + P+ Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180 Query: 189 TPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP F P + + ++P GE+ A L +F E++ YY ++RD PA+ GTSQL Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSPRQC + +G +W+NEL+WREFY+H++ YP V + Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P TE + W + L AW+QG TG PIIDAAMRQL GWMHNRLRMI A FL K+L Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP Q ++FD +G FI Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLPEL + + IH P S L YP PIVD ++ L + ++ Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAFRNLGQE 474 >gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B] gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis SB2B] Length = 475 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 196/478 (41%), Positives = 268/478 (56%), Gaps = 9/478 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ LVW R DLR DN+AL AC +++ KV A+FIA+P QW++H + RQ F+ A Sbjct: 1 MNT-LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLA 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDK 121 +L + + L+ GI + F + L ++C + ++ +F + + + Sbjct: 60 NLNALGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQAL 119 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + + + MY+V+TPF + + L +P PA Sbjct: 120 LDKGFPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 T PV + + D +P+G+ AL L +F + + Y E RD PAI G Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL++GV+SPRQC L E+F D+ + S A WLNEL+WREFYRHL+ +P + Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M K F P + I W D +AWK G TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DWR GE YF QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP Q ++FDP+ Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G FIR +LPEL PT+ +H + S YP PIV+H +A L+ KK Sbjct: 419 GRFIRKYLPELAQWPTRSLHQ--ASGPGLFDSSGYPSPIVEHTQARVRALDVMAVMKK 474 >gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891] Length = 475 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 217/477 (45%), Positives = 287/477 (60%), Gaps = 11/477 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VWLR DLR+ DN AL A S V AV+IATP+ W++H ++ Q+ I+ LL + Sbjct: 1 MKIVWLRRDLRVDDNTALVEAV-MSGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ LS K I Y + + D+ + L Q +++N QYE++E++RD+ L +L Sbjct: 60 KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----R 183 I C FDD +L PGS++N + YKV+TPF++A Q L Q + V + Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L+ P+ + + + +N + LR F EKV Y QRD P ++GTS Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYFVDTKNIIQKLRDFESEKVDAYALQRDFPEMEGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+IG LS RQC L + G WL+EL+WREFY+HL+ F P + Sbjct: 240 QLSPYLAIGALSVRQC---LIRLLCNNPPPIAGGREVWLSELVWREFYQHLIYFEPKLSK 296 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G F W + + W + ++AWK G TG+PI+DAAM QLN GWMHNRLRMI ASFLVK Sbjct: 297 GHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVASFLVK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D PYFR+FNPT QG++FD + + Sbjct: 357 DLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFDSEAS 416 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FIR WLPEL VP +YIH P W + LS YP PIVDHK TL Y AK+ Sbjct: 417 FIRSWLPELEEVPDRYIHKPWCWPNAKSLS--YPTPIVDHKAEREITLALYKDAKEN 471 >gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 482 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 241/482 (50%), Gaps = 19/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W RNDLR+ D+ AL AA H A ++ ++I +Q + ++ SL + Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTG-APILPLYILDDASPKQWKMGGASHWWLDKSLAALAG 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G + DS L + +++ R YE V ++ L+ +L Sbjct: 66 DLASRGGPLVLRR----GDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKLDDA 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRL 184 + C+ F +L P + YKVYTPF +A++++LV A R + Sbjct: 122 NVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEKQPK 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + + GE A L F + + Y R+ PA GTS+ Sbjct: 182 SERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSR 241 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G +SP + A ++L EL+WREF L+ +P + Sbjct: 242 LSPHLAFGEISPAA-CWHAAAHAGGKTNGSDNAAETFLKELLWREFSAGLLFHFPELPE- 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +PF P W+ ++ L+AW+ G TG+PI+DA MR+L G+MHNR+RMITASFL+K Sbjct: 300 EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKH 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++FDP G + Sbjct: 360 LLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDGDY 419 Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL +P Q IHAP L +YP PIV+H +A L Y K Sbjct: 420 VRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARARALAGYEHIK 479 Query: 479 KQ 480 Sbjct: 480 NS 481 >gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242] Length = 472 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 246/480 (51%), Gaps = 24/480 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RNDLR+ DN AL AA S A +IA+++ E + + + +++ SL + Sbjct: 5 AVVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALA 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L++ G+ + + L++ +++NR YE +RRD ++ +L+ Sbjct: 64 HDLARLGVTLTLRR----GRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRL 184 R + + L PG + N + ++V+TPF +A + + L Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPAPKKLTAAPPPA 179 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + + GE AL L +F K++V Y RD A +G S+ Sbjct: 180 SDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMAREGVSR 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +SP+L G +SPR+ W + E D +L E+ WREF HL+ P + Sbjct: 240 MSPHLHFGEVSPRRIWAEITEAAGDAGAA-------YLREIGWREFCHHLLVANPQMPE- 291 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W +D+ L+AW++G TG+P++DAAMR+L G MHNR RM+ ASFLVK Sbjct: 292 RALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAASFLVKH 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ GE +F L+D DLA+N+GGWQW A G D+ PYFR+FNP +QG++FDP+G + Sbjct: 352 LLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGDY 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PEL + ++IH P ++ L YP PIVDH KA L + A + Sbjct: 412 LRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRALKAFEATR 471 >gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM573] Length = 469 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 275/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A + + V AV++ATP+QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185 + I S D + PPGS+ + +KV+TPF++A + P Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVSN 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P+ + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 EFSHLVWHTDQIFDYTRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468 >gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003] Length = 499 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 252/494 (51%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVW R DLR TDN ALY A + + +V VF+ W+ R+ Sbjct: 13 TGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGTQAQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI ASL ++ ++L +G + D ++ + + V +F N YE + Sbjct: 72 VEFILASLHELDEALRARGGGLVVL----YGDPVDLVPKLAAELEVDAVFANHDYEPAAI 127 Query: 118 RRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + +RL ++F D V+ +L + + V+TP++ A ++ L DL+ Sbjct: 128 ERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFDLKP 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV P + R P + P G A +L F Y Sbjct: 188 FPVETYANRLAPLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLDDFLSRIDSY 247 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 E+RD PA +G S LS +L G +S R + L GA +WL+EL+WR+ Sbjct: 248 A-ERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAHEMSLQPDGRGAATWLSELVWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW +G TG+P+IDAAM QLN Sbjct: 304 FYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLIDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D A+NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P ++IHAP + L +YP PI Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAGAQRLAEYGVMLGEDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAQARARTLARF 497 >gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493] gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212] Length = 472 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 256/479 (53%), Gaps = 21/479 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W R DLR++DN AL A ++D +I ++I + + Q +++ SL Sbjct: 1 MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLS 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS+KG + D+ L + +V K+++NR YE D LE R Sbjct: 56 SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183 L + + + ++L P I N + YK++TPF K + +L Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE+NA +L+KF KE + Y RD P I TS Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + K+ +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGR 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYKD 467 >gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 475 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 208/475 (43%), Positives = 285/475 (60%), Gaps = 11/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLRI DN+AL +A S+ V+A++IATPE W++HG++ Q+ I L+ + Sbjct: 1 MKLVWLRRDLRIEDNRALCSAIE-SEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ + Y Q + + + + + +++N++YE +E RD L++ L Sbjct: 60 QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----R 183 H I SFDD L PGS+LN +KV+TPF++A + Q + + I + Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L G +P+ + ++ LR F + Y + RDIP+I+GTS Sbjct: 180 LHGEQAQLFSDNSSFDYPTESSATYPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL+IG LS RQC RL ++ L G W++ELIWREFY+HL+ F + Sbjct: 240 RLSPYLAIGALSVRQCMARLHDQHPKPL---PPGREMWMSELIWREFYQHLIYFESKLSK 296 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 GK F+ W +++ W S + AWK+G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL+K Sbjct: 297 GKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLIK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG+RFDP G Sbjct: 357 DLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDGE 416 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F+ W+PEL VP ++IH P W +LS YP PIVDHK TL+ Y AK Sbjct: 417 FVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469 >gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047] Length = 463 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 209/468 (44%), Positives = 288/468 (61%), Gaps = 6/468 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLRNDLR+ DN ALYAAC + A V AV+IATP+QW QH SA + F A+L + Sbjct: 1 MKLVWLRNDLRLDDNPALYAAC-HGTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ GI F+ Q S F D + L YC + VT L++NR++ ++E RD + +RL Sbjct: 60 KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++ LL I N Q YKV+TP+ KA ++ L D L P + Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 +P+N D ++P EQ+AL L +FC+ ++++Y + RD PAI GTS LSPY Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G++SPR+C +++ + + A WL EL WREFYR+LM +P + GKPF Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ W ++ LL AW+ G TGFPIIDAAMRQL + WMHNRLRM+ ASFL K +L+D Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE +FM QL+DGD SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR + Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 LPEL + + IH P + L + L YP PI+D+K A ++ Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTARERAISALNK 462 >gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio mimicus VM603] Length = 469 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 274/473 (57%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA + + V AV++A P+QW QH ++ Q+ FI+ L + Sbjct: 1 MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F ++ ++ ++ NR YE++E +RD E+ L Sbjct: 60 QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLT 185 + I S D + PPGS+ + +KV+TPF++A + P Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P+ + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 EFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LS RQC RL E + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW DS Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP P+VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468 >gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix] Length = 469 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 169/476 (35%), Positives = 242/476 (50%), Gaps = 19/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ D AL+AA A VI VFI P++ Q A + +++ SL + + Sbjct: 6 LVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQSLNE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++ G S++ L + T +++NR YE V RD+ ++ L+ Sbjct: 65 ALNKAGSPLVVRAGP----SLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRAD 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185 + ++ L + P + Y+V+TPF +A +Q ++ LP P Sbjct: 121 GLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQNPLPAPSRLPAPGKPPR 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + GE+ A L +F ++ + Y + RD P GTS+L Sbjct: 181 SLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGTSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SPRQ L++ V L G S++ EL WR+F H++ +P + Sbjct: 241 SPHLHFGEVSPRQVLRALRDAGVSL---DHKGPESFVRELGWRDFAHHVLYHFPH-TTEQ 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P P E W + L AW+QG TG PI+DAAMRQL GWMHNRLRM+ SFL K+L Sbjct: 297 PLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLTKNL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G +F L+D DLASN GWQWA G D+ PYFRIFNP QG+++DP G F+ Sbjct: 357 RLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDGRFV 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R +LP L T+YIHAP + YP PIVD K + L + A KK S Sbjct: 417 RSFLPVLKKTETRYIHAP-----GAGGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467 >gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Pseudomonas entomophila L48] Length = 484 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 197/476 (41%), Positives = 275/476 (57%), Gaps = 9/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLRI DN AL AAC +A++IA+P QW++H +A + F +L + Sbjct: 1 MQLIWLRSDLRIDDNTALSAACQ--GGPAVALWIASPGQWQRHDDAACKVDFWLRNLRLL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++L I + + + L C + ++ + +N +Y +NE RD L+ Sbjct: 59 SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D +L PGS+L Q ++V++ F++ +++L ++ P + Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLPARAQRPKRQAPLD 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P Q++ +P GE+ A L +F E V Y + RD+PA GTSQ Sbjct: 179 IASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKAGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP+GTF Sbjct: 359 LLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDPKGTF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR WLPEL + + IH P D N+ S NY PIVD + L+ + Sbjct: 419 IRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAFKGL 474 >gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli AAC00-1] Length = 493 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 170/491 (34%), Positives = 243/491 (49%), Gaps = 21/491 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R DLR D+ ALY A +V VF+ + R+ FI SL+Q Sbjct: 6 SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLVQ 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + E + + + V +F N E + RD + +RL Sbjct: 65 LDASLRALSGHRHGGLIVRHGVAAEEVPALAARLGVQAVFANHDDEPVALERDDRVRRRL 124 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180 + ++ D + +L Y V+TP++ A ++ + L + PV Sbjct: 125 GTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 184 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A R G + +D + + L +++ Y E RD PA++ Sbjct: 185 APRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFLQRIDQYGEARDFPAVK 244 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS +L G LSPR+ E GA +WLNELIWR+FY ++A +P Sbjct: 245 GPSYLSVHLRFGTLSPRRAARAAHERMRQGST----GAATWLNELIWRDFYFQVLAHHPQ 300 Query: 301 VCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V G F P + + + AW +G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 301 VAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMVV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVKDL VDWR GE YF +L D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++ Sbjct: 361 ASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRK 420 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471 FDP+G FIR +LP+L +P +++HAP L NYP P+VDH +A TL Sbjct: 421 FDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRTL 480 Query: 472 NQYYAAKKQSL 482 +Y K ++ Sbjct: 481 ARYAVVKSEAA 491 >gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614] gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614] Length = 478 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 162/485 (33%), Positives = 241/485 (49%), Gaps = 25/485 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYAS 64 M+ LVW R DLRI DN AL+ A + +V+ VFI P H + +++ S Sbjct: 1 MTT-LVWFRQDLRIKDNPALFEAAKS--GRVLPVFILEPADKTGETHPLGGASRWWLHHS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q+ L G+V D+ + + V +F+NR YE + RD L+ Sbjct: 58 LKALQQDLP--GLVLL------KGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLK 109 Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180 L+ KSF S+L P I + YKVY+PF KA Q + L + Sbjct: 110 SSLKDDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDDALPAPEKLDIA 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + ++ + + ++ GE A L F +E + Y + R+ P + Sbjct: 170 DYDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDLP 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSP+L G +SPRQ W+ ++ G +E+ WREF +L+ +P Sbjct: 230 NVSRLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDGMKFL-SEIAWREFSHNLLYHFPK 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + ++ W + L+ W++G TG+PI+DA MR+L G+MHNR+RMI ASF Sbjct: 289 LPSENW-RSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+K L + WR GE +F L+D DLA+N+ GWQW A +G D+ PYFR+FNP QG++FDP Sbjct: 348 LIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474 G +IR W+PEL + T+Y+ AP + L YP P+VDH A L Y Sbjct: 408 DGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALEGY 467 Query: 475 YAAKK 479 A K+ Sbjct: 468 EAVKQ 472 >gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510] Length = 504 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 165/495 (33%), Positives = 245/495 (49%), Gaps = 26/495 (5%) Query: 7 MSVHL-----VWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58 MS + VW RNDLR+ DN AL AA + VI ++I E + Q Sbjct: 12 MSTAIAPPIIVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQR 71 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ SL ++ ++ G + + LD+ + + +NR+Y + Sbjct: 72 WWLHGSLERLATCCARHGSPLVLRR----GEPAAVLDALIAETGAGCVLWNRRYAPAQTA 127 Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD +++ L+ R I +SF+ +L P ++ N + +KV+TPF + L L Sbjct: 128 RDAAIKQGLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRA 187 Query: 178 PVPAIRLT-----GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P + +P + + GE AL L F V Y Sbjct: 188 PAALKAPATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVGVYAT 247 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD P GTS LSP+L+ G + PRQ W + + +G +L E+ WREF Sbjct: 248 ERDRPDRHGTSTLSPHLAFGEIGPRQVW-HAARHAAEARPELAAGIDFFLREVGWREFQY 306 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ P + +P P W +D+ LQAW++G TG+PI+DA MRQL GWMHNR Sbjct: 307 HLLHHAPELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNR 365 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFLVKDLL+ W+ GE +F L+D DLA N G WQW A G D+ P+FR+FNP Sbjct: 366 VRMIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPV 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 +QG++FDP G ++R ++PEL+ +P ++IH P + L +YP PI+DH A Sbjct: 426 LQGEKFDPDGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILDHGAA 485 Query: 467 CHHTLNQYYAAKKQS 481 L Y K ++ Sbjct: 486 RDRALALYNERKAKA 500 >gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972] Length = 475 Score = 319 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 211/473 (44%), Positives = 276/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A SD V A+F+ATP QW+QH ++ Q+ FI+ L + Sbjct: 1 MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ + Y + + F ++++ + ++ NR YE+NE +RD +RL Sbjct: 60 QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119 Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185 + I FDD ++PPGS+ N +KV+TPF++A + +++ P Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + +P+ LR FC+E++ Y +QRD PA GTS L Sbjct: 180 ALQSLLWCEAQPFTHPRVSSDAWPVDFDTIRRRLRAFCQEQLDDYKQQRDFPAQDGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC R+ E + GA +WL+ELIWREFY+HL+ F P + K Sbjct: 240 SPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLSELIWREFYQHLLTFEPKLSKSK 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++ W D W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFM L+DGD A+NNGGWQW ASTG D PYFRIFNPT QG++FDPQG FI Sbjct: 358 HIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL VP +IHAP +W N L YP PIVDHK TL Y AK Sbjct: 418 RQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468 >gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 484 Score = 319 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 173/495 (34%), Positives = 251/495 (50%), Gaps = 34/495 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65 MS LVW R DLR D+ AL+ A ++ +V F+ + R+ FI+ASL Sbjct: 1 MSSALVWFRRDLRSFDHAALHHALRFAE-RVHCAFVFDTAILDALPARADRRVEFIHASL 59 Query: 66 LQVQKSLSQKGIV-------FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 ++ +L + + + + V K+F NR YE + + Sbjct: 60 AELDAALDAMARAAGGTGGGLIVRH----GRAEDEIPRLAAELGVDKVFANRDYEPDAIL 115 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD + +RL I + F D V+ +L + Y V+TP++ A ++ + + + S Sbjct: 116 RDSRVAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQVSSH 175 Query: 178 PVPA-----IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 V T + P + P+G L ++ Y Sbjct: 176 AVEKYAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGG-KRLFDDFAARIERYKR 234 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G +S RQ + + GA +WL+ELIWR+FY Sbjct: 235 ARDFPAVKGVSYLSTHLRFGTVSIRQLAAHARARGGE-------GAETWLSELIWRDFYH 287 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ +P V + F P + ++W+ L AW + TG+PI+DAAMRQL+ GWMHNR Sbjct: 288 QILWHHPQVVD-RAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGWMHNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL KDL VDWR+GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Sbjct: 347 LRMIVASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPV 406 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466 Q ++FDP+G FIR +LPEL VP ++IHAP + + + ++YP PIVDH A Sbjct: 407 TQSEKFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVDHAAA 466 Query: 467 CHHTLNQYYAAKKQS 481 TL ++ K + Sbjct: 467 RERTLQRFGVVKNDA 481 >gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44] Length = 490 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 165/492 (33%), Positives = 245/492 (49%), Gaps = 21/492 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI SL ++ Sbjct: 1 MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + Q + + + + Q +F N E + RD + + L+ Sbjct: 60 DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119 Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + F D + +L +L + V+TP++ A ++ + L + P + Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + R + + L ++ Y RD PA++ Sbjct: 180 ADLPDSERRPIPTAADLGFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPALK 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 G S LS +L G +S R+ E D + GA +WL+ELIWR+FY ++A Sbjct: 240 GPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAHQ 299 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + F P + IEW + AW +G TG+P++DAAMRQLN+ G+MHNRLRM Sbjct: 300 P-YVVERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 359 VTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHH 469 ++FDP G FI ++PE+ +P++ HAP L +YPLP+VDH A Sbjct: 419 EKFDPDGKFIARYVPEVAQLPSKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAAREK 478 Query: 470 TLNQYYAAKKQS 481 TL +Y KK++ Sbjct: 479 TLARYGILKKEA 490 >gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str. Corby] Length = 471 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 165/478 (34%), Positives = 248/478 (51%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + E + Q V +++NR YE RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRK----GSPQEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLA 112 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L R I +SF+ ++L P +I N +KV+TP+ K Q N+ + + I Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQILNIPSPLMLTKRPRGIE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T + GE+ A L +F + Y RD PA TS Sbjct: 173 ITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP R E + +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPW-VILRALELTKLEQTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W D LL W++G TG+P+IDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 CENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + + + YP PI++H++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDASASSIFLGNKYPKPIINHQEARTKALSYYQQIKK 468 >gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 471 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L I F Y + +F D + + + T + N YE+NE D + + L Sbjct: 62 ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 I + F D + P ++LN + +KV+TPF++A + P+ L Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKVLE 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + F + + + L LR+F +E+ Y +RD PAI GTSQL Sbjct: 182 QLESARFNSSFTFSYPRESSEDWLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471 >gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 480 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 266/479 (55%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHASQQ--GPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ +Q + ++ N ++ +NE++RDK ++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123 Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180 + F D + P SI N + Q Y+V+ F+KA L + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A F P + + +P GE AL L F K+ + Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+W+ + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K++L+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480 >gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 483 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + + L W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 164/495 (33%), Positives = 238/495 (48%), Gaps = 34/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR+TD+ ALY A S +V VF+ + R+ F+ AS+ Sbjct: 7 SLVWFRRDLRMTDHAALYYALSQS-RQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ ++L G ++ + + + V ++ N YE V RD + + Sbjct: 66 AELDEALRHAGGGLIVLH----GSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQ 121 Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L S+ D V+ +L + + + V+TP++ A + L AD P Sbjct: 122 TLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVE 181 Query: 185 TGPVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ P + P + P G A +L +++ Y Sbjct: 182 KYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLD-EFLDRIGSYGAA 240 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA++G S LS +L G +S R + + WL+EL WR+FY Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGA--AVWLSELTWRDFYFM 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 ++ +P V F P + I+W + AW +G TG+P++DAAM Q+N G+MH Sbjct: 299 ILHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMH 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+ ASFL KDL +DWR GE YF L D DLA+NNGGWQWA+S+G D+ PYFRIFN Sbjct: 358 NRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFN 417 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P Q ++FDP G FIR +LP+L + + IHAP + L NYP PIVDH Sbjct: 418 PVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHA 477 Query: 465 KACHHTLNQYYAAKK 479 +A TL +Y KK Sbjct: 478 QARERTLARYAVVKK 492 >gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58] gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58] Length = 479 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 158/481 (32%), Positives = 226/481 (46%), Gaps = 24/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++DN AL AA VI V+I + Q +++ SL + Sbjct: 9 IVWFRKDLRLSDNLALLAAVE-HGGPVIPVYIREKS---AGPLGGAQEWWLHHSLAALSS 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G D+ L + + +NR+Y+ + DK L+++L+ Sbjct: 65 SLEKAGGRLVL----ASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDD 120 Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 + LL S L + Y+VYTPF +AL Sbjct: 121 GLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWPK 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ + + ++ GE AL L F + Y E RD PA TS Sbjct: 181 SEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKPATSL 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G +SP W+ K + + E++WREF HL+ +P + Sbjct: 241 LSPHLAAGEISPAAVWHATKGLSRHIASN---DISRFRKEIVWREFCYHLLFHFPELGEK 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W D +AW +G TG+PI+DA MRQL G MHNR+RMI ASFL+K Sbjct: 298 NW-NDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKH 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++F L+D D ASN WQW A +G D+ P+FRIFNP +QG++FD G + Sbjct: 357 LLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDY 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R ++PEL + +YIH P +L YPLPIVDH KA L Y A K Sbjct: 417 VRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERALAAYAAVK 476 Query: 479 K 479 K Sbjct: 477 K 477 >gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4] gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4] Length = 478 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 201/482 (41%), Positives = 273/482 (56%), Gaps = 19/482 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS L+WLR D R+ DN AL A + A+FIATP QW+QH ++ ++ I L Sbjct: 1 MS-ALLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLE 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L++ GI ++F D + L YC V L N + E++E RDK + Sbjct: 58 LMAGELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAA 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185 + + + + +LPPGS+LN +M+KV+TPF+KA ++ + + +P PA Sbjct: 118 ---GIDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPV 174 Query: 186 ------------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +P EQ +L F ++K+ Y E+ Sbjct: 175 KSIGDAQAASQLPQQPTPQSSSINLDYPLVDSGRWPDSEQVMGQLLPHFWQDKLLNYGER 234 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PAI+GTS LSPYL+IG +S R +L + +++ + GAF+WLNELIWR+FY+H Sbjct: 235 RDFPAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKH 294 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ YP + G F P E + W + QAW +G TG+PI+DAAM+QL GWMHNRL Sbjct: 295 LLFHYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRL 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL K LLVDW GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP Sbjct: 355 RMIVASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPIT 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FDP+G FIR +LPEL VP + IH PH +L + YP PIVDHK A L Sbjct: 415 QSQKFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAF 474 Query: 474 YY 475 Y Sbjct: 475 YK 476 >gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512] Length = 482 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 163/479 (34%), Positives = 240/479 (50%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DNKAL AA H S +I+++I PE + A Q+ +++ SL + Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLHHSLEALDG 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++ +++E L S Q +F+NR+Y+ + D +E L+ R Sbjct: 69 SLRKRRGGL----SLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISIDARIEHELEKR 124 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185 I LL S L + Y+VYTPF +AL + + + + Sbjct: 125 AIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEAEPLDIPSKLQLASKLPGS 184 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + GE+ A LR F ++++ Y E RD PA TS L Sbjct: 185 EKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSML 244 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L++G +SP + W+ + P + + E+ WREF HL+A +P + Sbjct: 245 SPHLALGEISPARIWDATRGL---SKHVPAADIVHFRKEIAWREFSYHLLAHFPRLATAN 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + EW + +AW +G TG+PI+DA MRQL GWMHNR+RMI ASFL+KDL Sbjct: 302 W-DDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +VDWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG++FDP G F+ Sbjct: 361 MVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDGDFV 420 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R +PEL + +YIH P L YP P+VDH A L Y A + Sbjct: 421 RAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 479 >gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810] Length = 471 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T + N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + +F D + P ++LN + +KV+TPF++A +Q V + +P+ +L Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQKQNELPSEQLA 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F + + + L LR F +E+ Y +RD PAI GTSQL Sbjct: 182 AVKQDGFDADFTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + G+ Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP ++IH P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKFIHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25] gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] Length = 471 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYLND 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + F Y + +F D E + + T + N YE+NE D + + L Sbjct: 62 ELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALASH 121 Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 I F D + PP ++LN + +KV+TPF++A + P+ + L Sbjct: 122 DIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQFQMPAVTKPQEQAPLSSKLLE 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F + + + L LR+F +E+ Y E+RD PAI GTSQL Sbjct: 182 QLEPIRFSSDFTFSYPRESSEDWFASTNDVLKQLREFARERSDAYKEERDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLRLFKSAKE 471 >gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 471 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 164/478 (34%), Positives = 245/478 (51%), Gaps = 15/478 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW R DLR+TDN A AC + + VI ++I + + Q+ +++ SL+ Sbjct: 1 MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL+Q+G+ + E + Q V +++NR YE + RDK ++ Sbjct: 57 ALGKSLNQQGLSLVLRK----GSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L R I + L P +I N +KV+TP+ K Q N+ + + I Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFILTKRPRGIE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + GE+ A L +F + Y RD PA TS Sbjct: 173 IASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP L+ ++ + +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPWVILRALELAKLE-HTCDLASVEHFLSELGWREFSVYLLYHFP-KLD 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 CENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FDP G Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGV 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + +Q IH P + D + + YP PI+DH++A L+ Y KK Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468 >gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1] Length = 496 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 169/493 (34%), Positives = 245/493 (49%), Gaps = 21/493 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI SL + Sbjct: 6 PVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQSLAE 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + Q + + + + Q +F N E + RD + + L Sbjct: 65 LDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQVARSL 124 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + F D + +L +L + V+TP++ A ++ + L + P + Sbjct: 125 KSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASK 184 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + R + + L ++ Y RD PA+ Sbjct: 185 LADLPDTERRTIPSAADLGFAPDTLAGLRLPTGVSGARRLLADFLPRLPQYKAARDFPAL 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +G S LS +L G +S R+ E D + GA +WL+ELIWR+FY ++A Sbjct: 245 KGPSYLSVHLRFGTVSIRELARLAHEAAHHEDWSAAAREGAATWLSELIWRDFYFQILAH 304 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + F P + IEW + AW +G TG+P++DAAMRQLNT G+MHNRLR Sbjct: 305 QP-YVVERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYMHNRLR 363 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 364 MVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 423 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACH 468 ++FDP+G FI ++PEL +P + HAP L +YPLP+VDH A Sbjct: 424 SEKFDPEGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAARE 483 Query: 469 HTLNQYYAAKKQS 481 TL +Y KK+S Sbjct: 484 KTLARYGILKKES 496 >gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 476 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----EEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271] Length = 476 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 244/480 (50%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTQEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I+ M+ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLPIVDHK A L Y + KK Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKSMKK 474 >gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633] Length = 480 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 166/479 (34%), Positives = 250/479 (52%), Gaps = 21/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A A + A VI V+I + +++ SL + Sbjct: 9 IVWFRQDLRLADNPA-LQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLASLAS 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q G + ++ E LD+ Q +F+NR YE +RD+ ++ L+ R Sbjct: 68 DLQQLGGELALMK----GEAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSLKDR 123 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PVPAIRLT 185 + +SF+ S+++ P I YKV+TPF K+L + A+ + A Sbjct: 124 GVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRPDALQLHAHEGG 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ + + GE A L +F K V Y ++RD+P GTS+L Sbjct: 184 LSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSGTSRL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SPRQ W+ +K+ GA ++L+E+ WREF +L+ +P + Sbjct: 244 SPHLHFGEISPRQVWHAVKQSDHARTG----GADTYLSEIAWREFSYNLLYHFPDLPEAN 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + EW++ L+AW++G TG+PI+DA MR+L GWMHNR+RMI ASFL+KDL Sbjct: 300 -FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIKDL 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR GE++F L+D DLASN WQW A +G D+ PYFR+FNP Q ++FDP+G ++ Sbjct: 359 FIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPKGDYL 418 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL ++P + IHAP + L YP PIVDH +A L + K Sbjct: 419 RKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFEKIK 477 >gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 483 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 207/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + + L W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 484 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 224/490 (45%), Gaps = 29/490 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+ DN+ L A V +F+ + A + ++ +L ++ Sbjct: 1 MQLHWHRRDLRVADNRGLATAAEA--GPVAPLFVFDRDVLD--HAGAPRVRYLLDALAEL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + D + + + + Y RD + L Sbjct: 57 RGAYQERGSDLLVAR----GDPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D++ PPGSI +A Y VYT F K + Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLVDAAT 172 Query: 188 VTPSNIPRFFDY-----------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + + + + P G + A L FC + +Y Y Sbjct: 173 LESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIYRY 232 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LS L G + R+ + + + + ++L WREF Sbjct: 233 ADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREF 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y H++ +P+V + + E I W D L AWK G TG+PI+DA MRQL +MH Sbjct: 293 YAHVLRGHPNVVTEN-YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RMI ASFL KDLL DWR G +F L D D A++NGGWQWAASTG D+ PYFRIFN Sbjct: 352 NRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACH 468 P QG+R+DP G +I+ ++PEL++V IH H L++ L+ +YP PIVDH + Sbjct: 412 PMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAERRE 471 Query: 469 HTLNQYYAAK 478 ++ + AA+ Sbjct: 472 RAISMFEAAR 481 >gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 483 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 208/473 (43%), Positives = 296/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + + L SW ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSSWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 471 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 274/474 (57%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A FIATPEQWR+H ++ Q+ I L + + Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L I F Y + +F D + + + T + N YE+NE D + + L Sbjct: 62 ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 I + F D + P ++LN + +KV+TPF++A + P+ L Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKVLE 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + F + + + L LR+F +E+ Y +RD PAI GTSQL Sbjct: 182 QLESARFNSSFTFSYPRESSEDWLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENQQ--NDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP +YIH P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471 >gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099] Length = 468 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 166/477 (34%), Positives = 236/477 (49%), Gaps = 17/477 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSVH+ W R DLR TDN +L AA VI FI P S + F+ SL Sbjct: 1 MSVHVHWHRRDLRATDNHSLSAAAET--GSVIPAFIFDPAVLE--FASPPRVAFMLESLS 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ ++G D E L + ++ +NR Y +RD+ + + Sbjct: 57 ELRAWYRERGGDLVV----ATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I S DD++L PGSI + Y VY+ F K ++ + P Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVS---APDGEQL 169 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V+ ++P F + P G + A L FC + +Y Y +QRD PA TS Sbjct: 170 ASVSGDSLPSQEALGFDDPEATIPDAGMEAARRRLETFCADPIYRYADQRDDPAADATSG 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G + R + L + + + ++L WR FY H++ P Sbjct: 230 LSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTVT 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + I+W D+ LQAWK G TG+PI+DA MRQL +MHNRLRMI ASFL K Sbjct: 290 AN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR G +F +L D D AS+ GGWQWA+ TG D+ PYFRIFNP QG+R DP Sbjct: 349 DLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAE 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL +VP + IH + ++ ++ YP PIVDH L+ + AA+ Sbjct: 409 YIRTYVPELADVPAETIHEWVALEPDERASVAPEYPDPIVDHAARREAALDMFEAAR 465 >gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis str. Al Hakam] gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB108] Length = 476 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 243/480 (50%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTG 186 +ICK F+ +LL P I YKV+TPF A + ++ + + + Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +++ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 476 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVNK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126] Length = 467 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 235/480 (48%), Gaps = 25/480 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC K++ ++I +++ SL + K Sbjct: 1 MWFRQDLRVKDNPALNAACDM--GKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNKR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130 L Q + D + +F+NR YE ++ RDK ++K L Sbjct: 59 L---NGHLQIFK----GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRLT 185 S + S+L P +L Y+V+TP+ K +A + + Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDND 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 S I+ + GE A L F + Y + RDIP+ GTS+L Sbjct: 172 SDGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SP Q W +K++F + K ++L+EL WREF +L+ +P++ K Sbjct: 232 SPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFPTLP-NK 287 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F +K W D+ L+AW++G TG PI+DA MR+L G+MHNR+RMI SFLVK+L Sbjct: 288 NFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 347 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W GE +F LLD DLASN+ WQW A +G D+ PYFRIFNP +QG++FD +G ++ Sbjct: 348 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R + PEL + +YIH P +L YP PIVD K + L+ + K+ Sbjct: 408 RKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 467 >gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16] Length = 513 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 240/491 (48%), Gaps = 26/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----ARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ E R+ FI SL Sbjct: 28 GLVWFRRDLRADDHAALHYALKHC-RQVWCVFVFDREILDPLIARGRKVDRRVEFILRSL 86 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L+ G D + + + + +F N YE RRD + + Sbjct: 87 EPLRRTLTDAGGGLIVLD----DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAVRQ 142 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +F D V+ +L Q + V+ P++ A ++ + DLR PV Sbjct: 143 ALASDSRVLFTFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLRPYPVDQYLG 202 Query: 185 TGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + + + + L +++ Y +RD P+ Sbjct: 203 ALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFIDRIGDYGYRRDFPS 262 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R + + + GA WL+ELIWR+FY ++ + Sbjct: 263 LRGPSYLSVHLRFGTISIRTLARAALDAVLRGGSESA-GAAVWLSELIWRDFYFMILHHH 321 Query: 299 PSVCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P V GK F P + ++ QAW TG+P++DAAM Q+ G+MHNRLRM Sbjct: 322 PRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLRM 381 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFLVKDL VDWR GE+YF QL D D ++NNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 382 VTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQS 441 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP L +P QYIHAP + L NYP PIV H+ A Sbjct: 442 EKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPIVQHEVARKQ 501 Query: 470 TLNQYYAAKKQ 480 TL +Y A +K Sbjct: 502 TLERYAAIRKS 512 >gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus Peru-466] gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034] gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030] Length = 471 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A FIATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVACFIATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + +F D + P ++LN + +KV+TPF++A +Q V R +P+ +L Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 F + + + + L LR F +E+ Y +RD PAI GTSQL Sbjct: 182 AVKQDGFDADFTFSYPRESSEAWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + G+ Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 483 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 206/473 (43%), Positives = 294/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + + L W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKIGRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199] Length = 484 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 162/488 (33%), Positives = 240/488 (49%), Gaps = 27/488 (5%) Query: 6 AMSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 AMS L+W R DLR+ DN AL AA V+AV+I E +++ Sbjct: 7 AMSNASPTLLWFRRDLRLADNPALTAAVRRG-RPVVAVYILDDEDAGDWASGGASRWWLH 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ +SL +G + + LD + +++NR YE RD+ Sbjct: 66 HSLERLAESLRGRGSRLILRR----GAAAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRS 176 ++ L+ +SF+ S+L P I + Y+V+TPF KAL L+ R Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRI 181 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + + + + GE A L F Y ++R+ Sbjct: 182 PTLEVAPASDDIDAWALTPSKPDWAFGLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRNF 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTS+LSP+L G + PRQ W+ +L+E+ WREF HL+ Sbjct: 242 PGTNGTSRLSPHLHFGEIGPRQIWHAA------SFHHTGMATDQFLSEIAWREFSHHLLF 295 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + P P +W+ D L AW+ G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 296 HFP-MLPTTPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRMI 354 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDLL+ W++G +F L+D DLASN+ WQW A G+D+ P+FR+FNP++QG Sbjct: 355 VASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQGA 414 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 +FDPQGT++R W+PE+ +P IH P L +YPLPI+DH+ A Sbjct: 415 KFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDRA 474 Query: 471 LNQYYAAK 478 L + + + Sbjct: 475 LTAFRSLR 482 >gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2] Length = 500 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 144/483 (29%), Positives = 220/483 (45%), Gaps = 17/483 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL AA + + A+++ + + ++ SL Sbjct: 24 SPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRA 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +G+ + E F +R + + L Sbjct: 83 LAADLKDRGVPLILRRGPANRVVPEVAALLGAATVA---FNDRAGAAETRVDHAVAARLL 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAI 182 SF +L PPGS+ + M + ++ F +A ++ + A V Sbjct: 140 SEDRRVLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKARRLDTPLPAPKHLDGVAHP 199 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ + + GE A L F + Y E RD P + Sbjct: 200 PEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAEGRDRPDLNHV 259 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SPRQ + ++ + P A + EL WREF HL+A P + Sbjct: 260 SRLSPHLRFGEISPRQILSAVR-HAAEAGAVPLVDADKFEAELYWREFSYHLLAEMPDLA 318 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + W + L+AW +G TG+P++DA +RQL GWMHNR+RM+ ASFL Sbjct: 319 RSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRVRMVVASFLT 377 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE++F L+D D A+N WQW A +G D+ PYFRIFNP QG++FDP G Sbjct: 378 KHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVTQGEKFDPDG 437 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 T++R ++PEL +P IH P + L YP P+VDH A L + + Sbjct: 438 TYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAARERALRAFES 497 Query: 477 AKK 479 +K Sbjct: 498 TRK 500 >gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062] Length = 471 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 234/484 (48%), Gaps = 29/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ + W R DLR++DN AL AAC + VI ++I +++ +++Y SL Sbjct: 4 SIVIHWFRQDLRLSDNPALSAACEAGE--VIPLYILNDKEYGAREFGGATKNWLYYSLKA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL + D ++S + +F+NR YE V D L+ L Sbjct: 62 LNESLK---GQLLIRR----GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDL 114 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------QNLVQADLRSLPVP 180 + I KSF+ S+L P + YKV+TPF + + + + P Sbjct: 115 EENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRKPLPVPDQLRIHP 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + GE+ A + L F ++ + Y + R+ PA+ Sbjct: 175 LNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPALT 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +SP Q W L + + +EL WREF L+ PS Sbjct: 235 HTSRLSPHLHFGEISPNQIWWVL------GSHEETRDIDHFRSELGWREFSYSLLFNNPS 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + W D L AW++G TG PI+DA MR+L G+MHNRLRMI SF Sbjct: 289 LPKSN-LNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK+LL+DWR+GEE+F L+D DLA+N+ WQW A G D+ PYFRIFNP +QG++FD Sbjct: 348 LVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDA 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 G + R +LPEL ++P +Y+ P L NYPLPIVD KK+ L + Sbjct: 408 HGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEALRAF 467 Query: 475 YAAK 478 K Sbjct: 468 EEIK 471 >gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M] Length = 493 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 172/493 (34%), Positives = 246/493 (49%), Gaps = 35/493 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVW R DLR TD+ ALY A + + +V VF+ W+ R+ Sbjct: 7 TALVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRR 65 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI ASL ++ +L +G + D + + + RV +F N YE + Sbjct: 66 VEFILASLRELDDALRAQGGGLIVL----YGDPADLVPKLADELRVDAVFANHDYEPAAI 121 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + +RL C +F D V+ +L + + V+TP++ A ++ L L+ Sbjct: 122 ERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLKP 181 Query: 177 LPVP------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 PV A G + + + + L ++ Y Sbjct: 182 YPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVTRIASY 241 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E+RD PA +G S LS +L G +S R E L GA +WL+ELIWR+F Sbjct: 242 AERRDFPAARGPSYLSVHLRFGTVSIRTLARLAHEI---SLQPDGRGAATWLSELIWRDF 298 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y +++ +P + G F + + W + AW +G TG+P+IDAAM QLN G Sbjct: 299 YFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLNRTG 358 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFLVKDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ PYFR Sbjct: 359 YMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQPYFR 418 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 IFNP Q ++FD G FI+ +LP+L +P +++HAP + L +YP PIV Sbjct: 419 IFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAPWLAGAQKLAAFGVVLGEDYPQPIV 478 Query: 462 DHKKACHHTLNQY 474 DH +A TL ++ Sbjct: 479 DHAQARARTLARF 491 >gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166] Length = 476 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 273/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL A + +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTAL--ASAMAAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + ++ + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 VT P FD P + ++P GE A H L F ++ ++ Y ++RD+PA GTSQ Sbjct: 180 VTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K+ Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G F Sbjct: 360 LLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R WLPEL + + IH P S +YP PI+D ++ L+ + Sbjct: 420 LRRWLPELQGLGKREIHNP-SAQRSLFGKADYPAPIIDLGESRARALDAFRNL 471 >gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans ES-2] Length = 473 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 170/479 (35%), Positives = 236/479 (49%), Gaps = 25/479 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 + W R DLR+ D+ ALY A NS A V VF+ R+ FI+ SL ++ Sbjct: 7 SICWFRRDLRLDDHAALYHALKNSRA-VHCVFVFDTVILDALSDKHDRRVEFIWHSLYEL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q G Q + +E + + V +F NR YE VRRD + L Sbjct: 66 NALLQQHGSTLQILH----GNPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLS 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRL 184 + D V+ IL Y V+TP++ A ++ L ++A ++ Sbjct: 122 DID-FHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAK 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P + P + P G A L + ++ Y E R+ PA++G S Sbjct: 181 SAPQAFPALALLGFLPGKLNVQALPTGASGA-ATLFENFVSRIDAYGEARNFPAVKGVSY 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G +S R+ + +G WL+ELIWR+FY+ + +P + G Sbjct: 240 LSVHLRFGTISIRRVASFAY-------YSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQG 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F I + + AW + TG+P+IDAAMRQLN G+MHNRLRM+ ASFLVKD Sbjct: 293 AAFKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKD 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YF L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++FD G F Sbjct: 353 LHIDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRF 412 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 IR ++PEL P ++IHAP + YPLP+VDH A TL + AA Sbjct: 413 IRRYVPELAGCPDKWIHAPWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471 >gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 483 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 242/483 (50%), Gaps = 21/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN+AL AA H S +I V+I P + A Q+ +++ SL + + Sbjct: 10 ILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEALDR 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++ D++E L + + +F+NR+Y+ + + D +++ L+ + Sbjct: 69 SLHERQGELVL----ASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 124 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 I LL S L Y+VYTPF +AL + ++A + Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLASQRPA 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + ++ GEQ A L F ++++ Y E RD PA TS Sbjct: 185 SETLKSWKLLPTKPDWAKGFADLWTPGEQGARERLSAFVEDELKGYKENRDYPAKPATSM 244 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L++G +SP + W+ + + + E+ WREF HL+ +P + Sbjct: 245 LSPHLALGEISPARIWDATRGLSNRVPAA---DIVHFRKEIAWREFSYHLLFHFPRLASE 301 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +W D +AW++G TG+PI+DA MRQL GWMHNR+RMI ASFL+KD Sbjct: 302 NW-NDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE +F L+D D A+N WQW A +G D+ P+FRIFNP +QG+ FDP G + Sbjct: 361 LMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFDPDGDY 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R +PEL + +YIH P L YP PIVDH A L Y A K Sbjct: 421 VRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRALAAYKATK 480 Query: 479 KQS 481 + Sbjct: 481 DAA 483 >gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146] Length = 471 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 242/467 (51%), Positives = 316/467 (67%), Gaps = 3/467 (0%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC + A+V+A+++ATP QW ++ RQ+ FI+ +LL +Q + Sbjct: 1 MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L + Sbjct: 61 LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAALT--I 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A QM+KV+TPF++A ++ L+ ADLR LP P+ R G P Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 RF + +FP GE A L +FC + Y +RD PA GTSQLSPYL++ Sbjct: 179 QAERFNYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLTL 238 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 GVLSPRQC L+ + + + SGA +WLNELIWREFYRHL+ +P +C +PFIPWT Sbjct: 239 GVLSPRQCLAALQPQAL-VSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 +I W D L W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+DWR+ Sbjct: 298 ARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE Sbjct: 358 GERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L +VP IH P W + L+YP P VDH +A TL + A+ Sbjct: 418 LRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464 >gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI] gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis str. CI] Length = 476 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 245/481 (50%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97] Length = 589 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 251/490 (51%), Gaps = 19/490 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 + I +D + PG + + Y VYTP+ ++ + L Q Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + T N + F + M+P GEQ A LR+F +K Y Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579 Query: 472 NQYYAAKKQS 481 +Y A + S Sbjct: 580 AKYKKAAQGS 589 >gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Length = 495 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 240/489 (49%), Gaps = 29/489 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL+ A +V FI + + R+ FI+ASL ++ Sbjct: 8 LVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELDT 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 +L G + + + + V +F N YE + RD + L Sbjct: 67 ALRALGGGLIVRHA----RAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALATD 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 +++ D V+ +L+ + + + V+TP++ A ++ L AD+ + + +R Sbjct: 123 GRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLRAH 182 Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P+N+ + P G Q L +++ Y RD PA+ Sbjct: 183 FAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQA-LFDDFIDRMPDYDSTRDFPAV 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S LS +L G +S R R + GA WL+EL+WR+FY ++ +P Sbjct: 242 KGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGT--GAAVWLSELVWRDFYFMILYQHP 299 Query: 300 SVCMGKPFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 V + F P + L QAW G TG+P++DAAM QLN G+MHNRLRM+ Sbjct: 300 HV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLRMV 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TASFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q + Sbjct: 359 TASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQSE 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 +FDP G FIR +LP+L + + IHAP L +YP P++ H +A T Sbjct: 419 KFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARART 478 Query: 471 LNQYYAAKK 479 L +Y KK Sbjct: 479 LLRYAVVKK 487 >gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15] gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus CB15] gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000] Length = 483 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 171/475 (36%), Positives = 241/475 (50%), Gaps = 17/475 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL A S VI ++I E + ++ SL + Sbjct: 18 IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILD-ETPGIRPMGGASLWWLDKSLKSLAA 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + E LD Q + +NR Y+ RD ++ L+ R Sbjct: 76 SLETLGTKLVLRK----GVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDR 131 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIRL 184 + C+SF+ +L P ++ N + Q YKV+TP+ +A ++L A + Sbjct: 132 GVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPA 191 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + N+ + D P GE A L F K + Y +QRDIP ++ TS+ Sbjct: 192 SESLASWNLHPTKPDWSKGFDLWTP-GEAGAHARLDAFLKGPIKGYGDQRDIPGVEATSK 250 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + PRQ W D P + A +L+E+ WREF ++ +P + Sbjct: 251 LSPHLHFGEIGPRQVW-LATRSAADQGDIPLAEADKFLSEIGWREFNHSILYNWPHMPSA 309 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P + W KD L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K Sbjct: 310 N-FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKH 368 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE +F LLD DLA+N G WQW A +G D+ PYFRIFNP QG++FDP+G + Sbjct: 369 LMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDPKGDY 428 Query: 425 IRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R W+PEL NV IH P + Y PIVDH A L Y+ Sbjct: 429 VRRWVPELRNVSDDVIHKPWTKPLHLPAGAKRLYSRPIVDHAMARARALEAYHGL 483 >gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum] Length = 630 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 259/486 (53%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR++DN+AL A + +IA++I +P+ + H S + F+ +L Sbjct: 139 VHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEV 198 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 ++ L++ I + + Q L+ N +YE++E R ++ Sbjct: 199 IKHDLAKLDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDELRREASMIRDF 258 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADLRSLP 178 ++ + D+ ++PPG + A + Y VYTP+ ++ + ++ + P Sbjct: 259 AENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPPEKNP 318 Query: 179 VPAIRLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 A ++ + IP + + ++P GE A L KFC+E + Y + Sbjct: 319 SSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIGNYQK 378 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IPA GTS +S +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 379 KRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAWRDFY 438 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D+ AW +G TGFPI+DAAMRQLN +G+MHN Sbjct: 439 KHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLGYMHN 498 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI A FL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 499 RCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 558 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL ++ + IH P++ + N YP PIV HK Sbjct: 559 LLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDCRDRA 618 Query: 471 LNQYYA 476 L Y Sbjct: 619 LAAYKE 624 >gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293] Length = 476 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 244/480 (50%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1] Length = 493 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 168/491 (34%), Positives = 235/491 (47%), Gaps = 20/491 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V LVWLR DLR+ D+ ALY A +V VFI + + R+ FI SL Sbjct: 6 PVGLVWLRRDLRLADHAALYHALRQC-RQVHCVFIFDDDILAPLPCADRRVEFICQSLSG 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L Q E + Q +F N E + + RD + + L Sbjct: 65 LDDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQAL 124 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQADLRSLPV 179 + SF D ++ +L A + V+TP++ A ++ + ++ Sbjct: 125 AAEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPER 184 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A R G P + +D + L ++ Y + RD PA+ Sbjct: 185 LAPRPEGERRPVPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLPRLPRYKQARDFPAV 244 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +G S LS +L G +S R+ E+ GA +WL+ELIWR+FY ++A +P Sbjct: 245 KGPSYLSVHLRFGTVSIRRLARLAWEQT-QSQPHDAEGAATWLSELIWRDFYFQILAHHP 303 Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 V F P + I W+ AW +G TG+P++DAAMRQLNT G+MHNRLRM+ Sbjct: 304 HVVHA-SFKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMV 362 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Q + Sbjct: 363 AASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 422 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHT 470 +FD FI ++PEL +P HAP L +YP P+VDH A T Sbjct: 423 KFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAARERT 482 Query: 471 LNQYYAAKKQS 481 L +Y K+ S Sbjct: 483 LARYGVVKQAS 493 >gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii] Length = 481 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 255/480 (53%), Gaps = 18/480 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR++DN AL AAC +++ +F+ R H + F+ L +++ Sbjct: 3 GLVWFRRDLRLSDNPALSAACQEC-REIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELR 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL+ G+ D +E + +V +++NR YE + RD+ +++RL Sbjct: 62 RSLALHGVSL----AWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREVQQRLAQ 117 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP- 187 + ++F D V+ + + ++ Y+ +R A L +P+ G Sbjct: 118 QGRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKA 177 Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P D ++++ GEQ A L+ F + V+ YV R++PAI GTS+L Sbjct: 178 STPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +S R + ++ F+W++EL+WREF++ ++A +P V G Sbjct: 238 SPHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGP 297 Query: 306 PFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + AW QG TG+PI+DA MRQLN GWMHNR+RM+ ASFLV Sbjct: 298 FKAKPGLPEPRPAGPERDRLFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFLV 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++ +RIFNP IQ ++FD +G Sbjct: 358 KDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAEG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R ++PEL +VPT++IH PH + +YP PIVDH++A L+ A Sbjct: 418 EYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLDLGKA 477 >gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 467 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 209/472 (44%), Positives = 284/472 (60%), Gaps = 6/472 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LV DLR+TDN AL A + + VIA F+ATPEQW+ H +S Q+ I+ L + Sbjct: 1 MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L Q + Y + ++ + WL C Q V ++F NR YEINE R + L + Sbjct: 60 QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++FDD +L PGS+LN +KV+TPF+KA ++ + + +R V A+ Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSALVTAPAN 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F YP + + + + LR F +K Y +RD PA+ TS LSPY Sbjct: 180 LLFDSSSSFSYPTRDSS-GWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTSMLSPY 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+IG +S RQC RLK + +GA +WL+ELIWREFY+HL+ F P +C ++ Sbjct: 239 LAIGAISARQCVARLK--YDAANTSLSTGAETWLSELIWREFYQHLIYFEPKLCKHHGYL 296 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W + ++W + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL KDL +D Sbjct: 297 SWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTKDLHID 356 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE+YFM+QL+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FD G FIR W Sbjct: 357 WRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGEFIRTW 416 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +PELN+VP ++IH P W + ++ +YP PIVDHK TL Y AK Q Sbjct: 417 IPELNSVPNKFIHKPWLWNEFENV--DYPQPIVDHKIQRDITLALYKDAKDQ 466 >gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 512 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 167/493 (33%), Positives = 244/493 (49%), Gaps = 21/493 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L+WLR DLR+ DN ALY A + K+ VF+ + R+ FI SL + Sbjct: 22 PVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQSLTE 80 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + Q + + + + Q +F N E + RD + + L Sbjct: 81 LAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSL 140 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + F D + +L +L + V+TP++ A ++ + L + P + Sbjct: 141 KSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASK 200 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + R + + L ++ Y RD PA+ Sbjct: 201 LADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPAL 260 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +G S LS +L G +S R+ E D + GA +WL+ELIWR+FY ++A Sbjct: 261 KGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAH 320 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + F P + IEW + AW +G TG+P++DAAMRQLN+ G+MHNRLR Sbjct: 321 QP-YVVERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLR 379 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL +DWR GE YF +L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 380 MVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 439 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDP G FI ++PEL +P + HAP L +YPLP+VDH A Sbjct: 440 SEKFDPDGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGITLGRDYPLPVVDHAAARE 499 Query: 469 HTLNQYYAAKKQS 481 TL +Y KK++ Sbjct: 500 KTLARYGILKKEA 512 >gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002] Length = 499 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 181/493 (36%), Positives = 248/493 (50%), Gaps = 37/493 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQS 58 LVW R DLR TD+ ALY A + + +V VF+ W+ R+ Sbjct: 14 GLVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRI 72 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 FI ASL ++ +L G + D E + + RV +F N YE + Sbjct: 73 DFILASLAELDDALRANGGGLVVL----YGDPAELVPKLAAELRVDAVFANHDYEPVAIE 128 Query: 119 RDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD + +RL + +F D + +LN + + V+TP++ A ++ L DL+ Sbjct: 129 RDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKPY 188 Query: 178 PVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 PV A+ + + P D P G A +L F Y Sbjct: 189 PVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLTRIDSYA 248 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E+RD PA +G S LS +L G +S R + + L GA +WL+ELIWR+F Sbjct: 249 -ERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAYEMSLQPDGKGAATWLSELIWRDF 304 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G PF P E + W AW G TG+P++DAAM QLN G Sbjct: 305 YFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNHTG 364 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TASFL KDL VDWR+GE YF L D D ++NNGGWQWAASTG D+ PYFR Sbjct: 365 YMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPYFR 424 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 IFNP Q ++FDP G FI+ +LP+L +P ++IHAP + L NYP PIV Sbjct: 425 IFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAPWLAGAERLAEYGVVLGGNYPEPIV 484 Query: 462 DHKKACHHTLNQY 474 DH +A TL +Y Sbjct: 485 DHAQARERTLIRY 497 >gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2] gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris HaA2] Length = 487 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 152/487 (31%), Positives = 224/487 (45%), Gaps = 26/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYASL 65 +VW R+DLR++D+ AL+AA S + +I +++ + + I ++ SL Sbjct: 10 IVWFRDDLRLSDHPALHAAA-ASGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQSL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L Q+G + + + Q + +N L + Sbjct: 69 RALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWNEIEIAPHRAIADDLAE 124 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPV 179 L I L + P I + +V+TPF + ++ + A Sbjct: 125 TLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLGDPPKPLPAPAMLRAG 184 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P I P T P D+ P + A H L +++ Y RD P Sbjct: 185 PDIASDDPATWQLEPTAPDWAGGLRASWTPG--ERAAHDLLTAFLDRLPGYAADRDRPDR 242 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LSP+L G +SPRQ W + +L+EL WREF RHL+ +P Sbjct: 243 DATSLLSPHLRFGEISPRQLW-YAARFAAAKRPAIAADIDKFLSELGWREFCRHLLHDHP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + W +D L AW++G TG+PI+DA MRQL G MHNR+RM+ AS Sbjct: 302 DLAERN-LQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVVAS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVK LL+DWR+GEE+F L+D D SN G WQW A +G D+ PYFR+FNP +QG++FD Sbjct: 361 FLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R W+PE+ +P ++IH P + L NYP PIVDHK L Sbjct: 421 PAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARALAA 480 Query: 474 YYAAKKQ 480 Y ++ Sbjct: 481 YAELRQS 487 >gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024] Length = 480 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 190/479 (39%), Positives = 265/479 (55%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ A I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHASQQ--GPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ Q + ++ N + +NE++RDK ++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123 Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180 + F D + P SI N + Q Y+V+ F+KA L + P Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A F P + + +P GE AL L F K+++ Y +RD P Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL+IG+LS RQC L G +WL+ELIWREFY+H++ + Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K ++ LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480 >gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 471 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 190/477 (39%), Positives = 282/477 (59%), Gaps = 14/477 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W+R DLRI DN AL +A N + IAVFI+TP++W QH ++ ++ FI+ L Sbjct: 1 MS-DILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLK 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L+ GI + + ++FDD + L Q +F N + E V ++ Sbjct: 58 QLEAELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPE---VDEQARDQQL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--------LP 178 + + + D V+LP GS+LN +M+KV+TPF+ A ++ + ++ Sbjct: 115 ISSGINLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNN 174 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A+ T + +P+ + +++ F KV Y RDIP+ Sbjct: 175 AKALLPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPS 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR+FY+HLM + Sbjct: 235 VKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHH 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G F ++W +D +AW +G TG+P++DAAMRQL GWMHNRLRM+ A Sbjct: 295 PKLVKGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVA 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE +FM L+DGD ++NNGGWQWA+STG D+ PYFRIFNP Q ++F Sbjct: 355 SFLTKHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G FIR ++PEL N+P +++H PH ++ KN ++ Y PIV+HK+A L + Sbjct: 415 DPKGIFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEARLRALAFFK 471 >gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155] gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155] Length = 505 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 196/493 (39%), Positives = 280/493 (56%), Gaps = 21/493 (4%) Query: 6 AMSV------HLVWLRNDLRITDNKALYAACHNSDAKVI---AVFIATPEQWRQHGISAR 56 +MS+ L+W R DLR+ DN+AL AAC + A + A++IATP QW++H ++ Sbjct: 17 SMSIKVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPI 76 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 Q FI + + + L+ GI F+ Q F D ++ YC QQ ++++F E Sbjct: 77 QLDFIERHINLLAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFA---GSEPE 133 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + + +Q + D+ LL PG++LN + MYKV+TPF + + + A Sbjct: 134 INEQQRDQACIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAI 191 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 +P GPV P F+ + ++ GE A IL F ++KV Y + RD Sbjct: 192 FLLPVPAPLGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDF 251 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 252 PAIDGTSSISPYLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLV 311 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 312 AFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMV 371 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q + Sbjct: 372 VASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSE 431 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHH 469 +FDP G+FIR +LPEL + + +H P + + ++ YP IV+H A Sbjct: 432 KFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARAR 491 Query: 470 TLNQYYAAKKQSL 482 L KK + Sbjct: 492 ALTVLGVLKKAAA 504 >gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3] gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3] Length = 482 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 238/482 (49%), Gaps = 17/482 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ ++W R DLRI D AL AA + KV+ ++I + +++ SL Sbjct: 1 MTDTVVLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGASRWWLHHSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + + G + + ++ L C ++ +R+YE + ++ L K Sbjct: 60 TALAQDIDHLGGTLIFRK----GKTLSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYK 115 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAI 182 L I K F S+L PGS+L +KV+TPF +A +N A+ S+ Sbjct: 116 ALDSDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEKPSVAWAEG 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + + + GE A L F + V Y ++RD+P++ T Sbjct: 176 IQSDTLDAWKLLPRDPDWAASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVDAT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++S +L G +SPRQ W +++ ++ + + EL WREF HL + Sbjct: 236 SRMSAHLHHGEISPRQIWAMCEQKKLE-QPHSDTAINKFQAELGWREFSYHL-LHFFPHL 293 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 PF W + LQAW++G TG+PI+DA MR+L G MHNR+RM+ ASFL Sbjct: 294 PETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASFLC 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL WR GE++F L+D DLASN WQW A +G D+ PYFRIFNP QG++FD QG Sbjct: 354 KHLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQG 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R W+PE+ + +Y+H P + L +YP PIVDH++A L+ Y Sbjct: 414 DYVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQAALDAYEH 473 Query: 477 AK 478 + Sbjct: 474 IR 475 >gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 476 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 247/481 (51%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-3] Length = 469 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFGYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus H3081.97] Length = 476 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 248/481 (51%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24] gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171] Length = 476 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + KK Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKK 474 >gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat Q177'] gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154] Length = 472 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 255/479 (53%), Gaps = 21/479 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W R DLR++DN AL A ++D +I ++I + + Q ++Y SL Sbjct: 1 MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLS 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS+KG + D+ L + +V K+++NR YE D LE R Sbjct: 56 SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183 L + + + ++L P I N + YK++TPF K + +L Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE+NA +L+KF KE + Y RD P I TS Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + K+ +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGK 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++ TG+PI+DA MR+L G+MHNR+RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ W+PEL VP++YIH P D K +L ++YP PIV+H KA L Y Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYKD 467 >gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str. A2012] gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CDC 684] gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. CNEVA-9066] gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A1055] gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Western North America USA6153] gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Kruger B] gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Vollum] gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Australia 94] gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Ames] gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. Sterne] gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0488] gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0193] gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0442] gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0465] gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0174] gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis Tsiankovskii-I] gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684] gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. A0248] gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames] Length = 476 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619] Length = 480 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 192/476 (40%), Positives = 275/476 (57%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL AAC +A+++A+P QW+ H +A + F +L + Sbjct: 1 MQLIWLRSDLRVNDNTALSAACER--GPAVALWLASPGQWQAHDDAACKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + L C Q ++ + +N +Y INE RD+ L+ Sbjct: 59 RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ D +L PGS+L + ++V++ F+K +++L ++ P + Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHLHRSLPSQAPRVKRQAPVG 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ FD P +A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P + +Y PIVD + L + + Sbjct: 419 IRHWVPELRGLDEKSIHQP-TQNKDLFADNSYHRPIVDLSSSRQRALEAFKGLSRS 473 >gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans CH34] gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus metallidurans CH34] Length = 513 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 172/491 (35%), Positives = 242/491 (49%), Gaps = 26/491 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYA 63 + LVWLR DLR DN AL+ A + +V VF+ E + R+ FI Sbjct: 25 TRGLVWLRRDLRTDDNAALHYALKHC-RQVWCVFVFDREILAPLLARGLHADRRVEFILR 83 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++++L G + + + + + V +F N YE RD+ + Sbjct: 84 SLEPLRRALEDSGGGLIVLDGT----ARQAIPRLAAELEVEAVFANHDYEPAANDRDEAV 139 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + +F D V+ IL + + V+TP++ A ++ + DLR P+ Sbjct: 140 RRTLAADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIEKH 199 Query: 183 RLTGPVTPSNIPRFFD------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + T P + + + + H L ++ Y +RD Sbjct: 200 QETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLSRIGDYGRRRDF 259 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA++G S LS +L G +S R + + + GA WL+ELIWR+FY ++ Sbjct: 260 PAVRGPSYLSVHLRFGTISIRTLARAAHDTMLRGGAASE-GATVWLSELIWRDFYFMILH 318 Query: 297 FYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V GK F + + W AW TG+P+IDAAM Q+ G+MHNRL Sbjct: 319 HHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSGYMHNRL 378 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 379 RMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPVT 438 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 Q ++FDPQG FIR +LP L +P +YIHAP + L +YP PIV H A Sbjct: 439 QSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVAR 498 Query: 468 HHTLNQYYAAK 478 TL +Y K Sbjct: 499 KETLERYGVVK 509 >gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae AM-19226] Length = 469 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1] Length = 476 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 243/480 (50%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTG 186 +ICK F+ +LL P I YKV+TPF A + ++ + + + Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +++ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFL+K L Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99] Length = 476 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter baumannii ATCC 19606] Length = 480 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 196/484 (40%), Positives = 271/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKIGFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175 L H F D + P SI N + Q Y+V++ F+KA L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + P + + +P+GEQ AL L +F +E V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQGTS+LSPYL+IG+LS RQC L G WL+EL+WREFY+H Sbjct: 239 RDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRI 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae MZO-2] Length = 469 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 208/474 (43%), Positives = 281/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 STLAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 471 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 282/474 (59%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I Y + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + +F D + P ++LN + +KV+TPF++A +Q V R +P+ +L Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + F + + + L LR F +E+ Y +RD PAI GTSQL Sbjct: 182 AVKQDAFDADFTFSYPRESSKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + G+ Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ +VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1] Length = 476 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3] gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29] Length = 476 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 L G + + E + S Q R+T +++N Y+ + ++ ++ ++ L+ Sbjct: 60 QLEALGSTLIIRK----GRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISKVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM 4136] Length = 475 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 155/481 (32%), Positives = 238/481 (49%), Gaps = 13/481 (2%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V L W R DLR+TDN AL+AA + +VI ++ + + + HF+ + Sbjct: 3 TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + K+L G +++ ++ + T L+ NR + + + Sbjct: 62 LESLAKNLEAIGSRLIIRS----GETVSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PA 181 + + D+VL P +L Y+V+TP+ K + L + A Sbjct: 118 ALCNKLGVAFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLGDA 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + P P + + ++ Y E R+ P++ G Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPG 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299 TSQLSP L G++S R+ ++R ++ +P +SG +++ EL WRE + + + Sbjct: 238 TSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWRE-FYMAVLHFY 296 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F P + W++D L AWK+G TGFP++DA MRQL GWMHNR+RMI + Sbjct: 297 PEVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSM 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL V W GE +FM L+DG++ASNNGGWQW+A TG D+ P+FRI NP Q KR+D Sbjct: 357 FLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G +I+ W+PEL +VP + AP + L+ YPLPIVDH TL ++ A K Sbjct: 417 PEGKYIKTWVPELKDVPAEMFFAPPTNGLP--LAKGYPLPIVDHATERDRTLQRFKVATK 474 Query: 480 Q 480 + Sbjct: 475 R 475 >gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis VL426] Length = 469 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 279/474 (58%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAINSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 1587] Length = 469 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21] Length = 469 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya fischeri NRRL 181] Length = 584 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 251/489 (51%), Gaps = 19/489 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A + +IA++I +P+ H +S + I +L Q Sbjct: 94 VYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARVDLILRTLHQ 153 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ LS+ I + + + C Q L+ N +YE++E+RR+ L + Sbjct: 154 LKRDLSELDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVRLC 213 Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----------- 175 I ++PPG + + + Y VY+P+ + + L + Sbjct: 214 AKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCLELSEEPGSNP 273 Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + Q + ++P GE AL L F +EKV Y E Sbjct: 274 GDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRLEAFLEEKVRDYAE 333 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R++ + Q TS LSPY + G+LS R + L G W+ E+ WREFYR Sbjct: 334 ARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHWIGEVAWREFYR 393 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +PS+CM K F P +EW D W +G TGFPI+DAAMRQ+ WMHNR Sbjct: 394 HVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMRQVKQDKWMHNR 453 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 454 TRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR W+PEL ++ IH P++ + N YP P+VDH K+ L Sbjct: 514 RQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPMVDHSKSRDLAL 573 Query: 472 NQYYAAKKQ 480 ++Y A K Sbjct: 574 HRYKRACKN 582 >gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 490 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 169/498 (33%), Positives = 242/498 (48%), Gaps = 35/498 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57 M LVWLR DLR+ DN AL+ A S +V FI E + R+ Sbjct: 1 MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI+ + Q+ L +G F + E + + V +F N YE + + Sbjct: 60 VDFIWQGIKQIDDQLRAQGGGLIVR----FSNPTECIPQLASELGVNAVFANHDYEPSAI 115 Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+++ +L+ I +F D V+ IL ++ ++ ++TP++ + L + DL + Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175 Query: 177 LPVPAIR------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + I+ P G + L F Y Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLTRIDQYQ 235 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD PAI+G S LS +L G+LS R + GA WL+ELIWR+F Sbjct: 236 I-SRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGS----MGATIWLSELIWRDF 290 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 Y ++A +P + G F P + I W L AW +G TG+P++DAAM QLN G Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+ ASFL KDL +DWR GE YF L D +L+SNNGGWQW +S+G D+ PYFR Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIV 461 IFNP Q ++FDP+G FI+ +LP+L + + +H P L +YPLP+V Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470 Query: 462 DHKKACHHTLNQYYAAKK 479 DH +A TL +Y KK Sbjct: 471 DHDEARKKTLVRYSVVKK 488 >gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar sotto str. T04001] Length = 476 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEDFL----MGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474 >gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4] Length = 469 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 277/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRGFCRERVQDYHQARDFPAREGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] - Buchnera sp. (strain APS) gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 483 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W RNDLR+ DN AL+ AC N KVI++FI+TP+QW +S ++ F+Y L+ Sbjct: 1 MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L + I+ YH+ ++F +SIE+L +C + +V LFYN +Y INE RD L++K+ Sbjct: 61 SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120 Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L Q + K F D++L I N + YKV+T F+K +IQNL + PVP+ R + Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + FP+GE+ A++ L+ FC K Y +RD P + TS L Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYLS G++S R C L + + L W ++++WREFY HL+ +P + + Sbjct: 241 SPYLSAGIISSRYCLKVLLK-TKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSE 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W ++I W + AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP Q K FD G FI Sbjct: 360 LINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL NVP +IH PH W + + ++YP PI+++ ++ +L+ + A+ Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472 >gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 480 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 194/484 (40%), Positives = 270/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKIGFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175 L H F D + P SI N + Q Y+V++ F+KA L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F +E V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIT 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH187] gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26] Length = 476 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 246/481 (51%), Gaps = 22/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ +++ I + +++ +++ V++ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYDETF----SIGSASKWWLHHTIIDVKR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + +++E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 Query: 480 Q 480 Sbjct: 475 S 475 >gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501] Length = 476 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 193/473 (40%), Positives = 271/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WLR+DLR +DN AL A + +AV++ TP QW H +A + F +L+++ Sbjct: 2 TQLIWLRSDLRTSDNTAL--ASAMAAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + + + + L C + V +L YN +Y +NE RRD+ + RL+ Sbjct: 60 AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I L PGS+L + +KV+ FR+A + L + + PA + Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179 Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + R FD P + ++P GE A H L F + ++ Y ++RD+PA GTSQ Sbjct: 180 VASDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTSQ 239 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+S RQC + L +GA +W+NEL+WREFY+H++ YP V M Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W + + LQAW++G TGFPIIDAAMRQL GWMHNRLRM+TA FL K+ Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q +RFDP G F Sbjct: 360 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R WLPEL + + IH P + +YP PI+D ++ L+ + Sbjct: 420 LRRWLPELQGLGKREIHNPSTQRSLFG-KADYPAPIIDLGESRARALDAFRNL 471 >gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551] Length = 475 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 147/479 (30%), Positives = 238/479 (49%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D R+ DN AL+ A + V+ V+I + + + + +++ +L + Sbjct: 6 IVWIRKDFRLVDNPALFHAAK--EGMVVPVYIHDD--YEESSMGSASKWWLHHALNDFKT 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ + + + + L + +++N +YE + ++RDK L+ + Sbjct: 62 SIKKIEGTLIVQK----GNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQ 117 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186 I + L P I YKV+T + KA ++ V + ++ + + + Sbjct: 118 QINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVES 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + I + E+ A+ + + F K K+ +Y + RD PA S LS Sbjct: 178 LSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFLS 237 Query: 247 PYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYL+ G LS R ++ L+ + + A ++ +LIWR+F L+ +P + Sbjct: 238 PYLATGQLSARVLYHYLRTKAEKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTT-E 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RM+ ASFLVK L Sbjct: 297 PLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLVKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q ++FD +G +I Sbjct: 357 LIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + WLPEL ++P+ YIH P L+ YP PIVDHK A L Y K Sbjct: 417 KKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARERALEHYQHIK 475 >gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1] Length = 480 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 192/479 (40%), Positives = 272/479 (56%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ AC I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHACQQ--GPSIGLVILSPEQWKIHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L + I + D +++ Q + ++ N + +NE++RDK +++ L Sbjct: 64 KELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQ 123 Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187 + F D + P SI N + Q Y+V+ F+KA L + + P+P + + P Sbjct: 124 QGKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNP 183 Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + SNI +A ++P GE AL L F + + Y +RD P Sbjct: 184 ESDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL++G+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIANEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+KI+WN + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ + + + Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKETRMKAIETFKSI 480 >gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum ATCC 11170] Length = 478 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 155/489 (31%), Positives = 228/489 (46%), Gaps = 27/489 (5%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYAS 64 M++ LVW R+DLR+ DN AL AA +S A VI ++ H + ++ S Sbjct: 1 MTIPVLVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +S++Q+G + +++ + + LF NR Y ++ +R D L Sbjct: 60 LTSLAESIAQRGGRLVLRR----GEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFM 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLP 178 + + FD +L P ++ + ++V+TPF K L L D Sbjct: 116 VLRVAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPV 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + ++ + + GE A L F V Y RD P Sbjct: 176 DDPPPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPD 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSP+L G +SPRQ W + G ++L EL WREF HL+ Sbjct: 236 KPLTSKLSPHLRFGEISPRQVWTAARHHPPGG------GMDAFLRELGWREFCHHLLFQA 289 Query: 299 PSVCMGKPFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P++ + E + L AW+ G TG+PI+DA MR+L GWMHNR+RMI Sbjct: 290 PTMAEEPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMI 349 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+KDLL+ W+ GE +F L+D A+N GWQW A G D+ P+FRIFNP QG+ Sbjct: 350 AASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGE 409 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 RFDP+G ++R WLPEL ++P+ IH P L YP P++DH A Sbjct: 410 RFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHARVRA 469 Query: 471 LNQYYAAKK 479 L + Sbjct: 470 LEALAVVNR 478 >gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202] gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60] Length = 471 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 237/467 (50%), Positives = 310/467 (66%), Gaps = 3/467 (0%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW ++ RQ+ FI+ +L +Q++ Sbjct: 1 MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+ I ++ + CL++R LF NRQYE+NE RRD L L Sbjct: 61 LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 C FDD++LL PG++L A M+KV+TPF++A ++ L ADLR LP P+ R P+ Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 + R +FP GE A L +FC + Y +RD PA GTSQLSPYL++ Sbjct: 179 PVARVDYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLTL 238 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 GVLSPRQ + P SGA +WLNELIWREFYRHL+ +P +C +PFIPWT Sbjct: 239 GVLSPRQ-CLAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 +I W D LQ W+QG TGFP++DAAMRQLN GWMHNRLRM+TASFLVKDLL+DWR+ Sbjct: 298 ARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE Sbjct: 358 GERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L VP IH P W + L+YP P+VDH +A TL + A+ Sbjct: 418 LREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464 >gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037] Length = 471 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 205/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F+ATPEQW++H ++ Q+ I L V + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLQHVHQ 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ I + FDD + + + + T N YE+NEV D+ + + L +R Sbjct: 62 ELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + +F D +L P ++LN + +KV+TPF++A +Q V R +P+ +L Sbjct: 122 GVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSEQLE 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + L LR F +E+ Y +RD PAI GTSQL Sbjct: 182 AVKQDGFDADYTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + G+ Sbjct: 242 SPYLAIGALSPRQCIARLYAENPQ--PDLSEGKATWLSEIIWREFYQHLLVFEPKLVKGR 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ VP +++H P +W + L Y P+VDHK TL + +AK+ Sbjct: 420 RHWVPEIKRVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471 >gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus ATCC 10987] Length = 476 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----EEEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPES 175 Query: 190 PSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S R ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474 >gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)] Length = 469 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 207/474 (43%), Positives = 280/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178 Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR FC+E+V Y + RD PA +GTS Sbjct: 179 SAFAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae 2740-80] gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae NCTC 8457] gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9] gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33] gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286] gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236] gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10] gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101] gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1] gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757] Length = 469 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 204/473 (43%), Positives = 279/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+L ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893] Length = 589 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 256/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + + +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L++K I + + C + +F N +YE++E+RR+ L + Sbjct: 160 LKSELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLC 219 Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 + I + DD+ ++ PG++ + Y VYTP+ ++ + L Q Sbjct: 220 AEQAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANA 279 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + + Q M+P GE A+ LRKF EK Y + Sbjct: 280 GDARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHD 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R K+ + L +G +W++E+ WR+FY+ Sbjct: 340 KRDFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASNNGGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKAL 579 Query: 472 NQYYAA 477 +Y A Sbjct: 580 ERYKKA 585 >gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp. RUH2624] Length = 480 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 191/484 (39%), Positives = 273/484 (56%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ AC I + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHACQQ--GPSIGLVILSPEQWKQHDDAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++QK L+ I ++D+ +++ + + + ++ N + NE++RDK ++ Sbjct: 59 LKELQKELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQ 118 Query: 125 KRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L F D + P SI N + Q Y+V++ F+KA L + L + Sbjct: 119 DSLNKESKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHK 178 Query: 184 LTGPVTPSNIPR----------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + F + ++P+GE AL L +F ++ V +Y + Sbjct: 179 QNEISLEFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P + GTS+LSPYL+IG+LS RQC L G +WL+ELIWREFY+H Sbjct: 239 RDFPHVHGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF T+KI+WN + L+AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPYVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIS 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q ++FDP G +IR W+ EL ++ + IH P+S +K +LSLNYP PIVD K+ + Sbjct: 419 QSQKFDPNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKHI 480 >gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185] Length = 500 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 197/483 (40%), Positives = 276/483 (57%), Gaps = 15/483 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+ DN+AL AAC + A +A ++IATP QW++H ++ Q FI + Sbjct: 22 ALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F+ Q F D ++ YC QQ + ++F E+ + + Sbjct: 82 LLAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFA---GSEPEINEQQRDQAC 138 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +Q + D+ LL PG++LN + MYKV+TPF + + + A LP+P G Sbjct: 139 IQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV P FF++ + ++ GE A IL F ++KV Y + RD PAI GTS +S Sbjct: 197 PVLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSIS 256 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGV+SPRQC L F ++++ S A +WLNEL WREFYRHL+ +P + Sbjct: 257 PYLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHN 316 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL Sbjct: 317 FNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 377 IDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGSFIR 436 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS-------LNYPLPIVDHKKACHHTLNQYYAAKK 479 +LPEL + + +H P + + YP IV+H A L KK Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARALTVLGVLKK 496 Query: 480 QSL 482 + Sbjct: 497 ATA 499 >gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102] Length = 587 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 250/486 (51%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN+AL A + +I ++I +P+ + H S + FI +L Sbjct: 96 VHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEI 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L+ I + + Q LF N +YE++E+RR+ L L Sbjct: 156 LKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELRREANLVHDL 215 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---------LVQADLRSL 177 + D+ ++PPG + + + Y VY+P+ ++ + + L ++ Sbjct: 216 AENGKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAHIHADLELLELFDPPNKNP 275 Query: 178 PVPAIRLTGPVTP-----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + ++P GE A L KFC+EKV Y Sbjct: 276 GTARKQFKDLFECAVPEAPSNKQLTKEEKRRFHSLWPAGESAAKERLEKFCEEKVGGYSN 335 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 R+IP GTS LS +L+ G +S R C ++ L G W++E+ WR+FY Sbjct: 336 NRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGIRVWISEVAWRDFY 395 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KP+ P I W+ + AW +G TGFPI+DAAMRQLN G+MHN Sbjct: 396 KHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDAAMRQLNHNGYMHN 455 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 456 RCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 515 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHT 470 +Q ++FDP+G +IR W+PEL ++ ++ IH P+ YP PIV+HK Sbjct: 516 LLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYPKPIVNHKDCRDRA 575 Query: 471 LNQYYA 476 L+ Y Sbjct: 576 LDAYKE 581 >gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80] Length = 469 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ ++ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWGVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + +P GA WL+ELIWREFY+HL+A P++ Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSKSL 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080] gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080] Length = 481 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 153/481 (31%), Positives = 226/481 (46%), Gaps = 19/481 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R+DLR+ D L AA VI VF+ + +++ SL + Sbjct: 5 SLYWFRHDLRLADLPGLIAAAKA--GTVIPVFVWDEALGGDWSLGGASQWWLHHSLQSLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 L+ G + ++ + + + +F +RQY+ + ++ + Sbjct: 63 ADLNGLGSRLILRR----GETSKVIAKLLEETGAQNVFASRQYQPWAADTENAVKAVTES 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRL 184 K + ++L P +I +KV+TPF +A ++ + +P Sbjct: 119 AGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQ 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + ++ GE A LR F V Y RD PA TS+ Sbjct: 179 SDALNTWQLCPKTPNWATGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTSR 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +SPRQ W + S +L+E+ WREF HL+A +P++ Sbjct: 239 LSPYLKFGEISPRQIW-WTAQNTKQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMPD- 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + P E W L AW+QG TG+PIIDA MR+L G+MHNR+RM+ ASFL K Sbjct: 297 KAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTKH 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ WR+GE++F LLD DLASN WQW +G D+ PYFRIFNP QG++FD G + Sbjct: 357 LLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGMY 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +P +Y++ P + +L YP PIVDH+ A L Y K Sbjct: 417 TRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATLK 476 Query: 479 K 479 Sbjct: 477 N 477 >gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 476 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica RCB] Length = 470 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 248/490 (50%), Gaps = 29/490 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 MK LVW R DLR D+ A +A +V F+ E R+ H Sbjct: 1 MKKEK----ALVWFRRDLRDHDHAA-LSAALAEAQQVYCAFVFDSEILDPLPTRHDRRVH 55 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI SL+++ +L +G +++ + + + V+ +F NR YE + RR Sbjct: 56 FIRESLVELDAALRARGGGLIIRH----GQAVDEIPALARRLGVSAVFTNRDYEPSAKRR 111 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + ++L++ I D + +L A + + V+TP++ A ++ L AD + P Sbjct: 112 DAQVARQLRNDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWP 171 Query: 179 VPAIRLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + G A + F ++++ Y RD P Sbjct: 172 CDGRLAGQELAGIPTLEEIGFTPTDLAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S RQ + D +WL+ELIWR+FY ++ Sbjct: 232 AVKGVSYLSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDH 281 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V G F P + I+W AW +G TG+P++DAAMRQLN GWMHNRLRM+ Sbjct: 282 FPHVA-GHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVV 340 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL +DWR+GE+YF QL D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++ Sbjct: 341 ASFLTKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEK 400 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 FD +G FIR ++PEL V +YIHAP + +YP PIVDH A TL Sbjct: 401 FDAEGKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETL 460 Query: 472 NQYYAAKKQS 481 +Y KKQ+ Sbjct: 461 ARYAVVKKQA 470 >gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23] Length = 587 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 253/486 (52%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN+AL A + +I ++I +P+ + H S + FI +L Sbjct: 96 IHWFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEI 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ I + + Q LF N +YE++E+RR+ + L Sbjct: 156 LKRDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREANMVHDL 215 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---------LVQADLRSL 177 + D+ ++PPG + + + Y VY+P+ ++ + + L ++ Sbjct: 216 AENGKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPNKNP 275 Query: 178 PVPAIRLTGPVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 R + + + ++P GE A L KFC+E++ Y + Sbjct: 276 GTARKRFKDLFDCAVPEAPSNKELTKEEKRRFHSLWPAGENAAKERLDKFCEERIGGYSD 335 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 R+IPA GTS LS +L+ G +S R C ++ L G W++E+ WR+FY Sbjct: 336 NRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEVAWRDFY 395 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KP+ P I W+ + +AW +G TGFPI+DAAMRQLN G+MHN Sbjct: 396 KHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNHNGYMHN 455 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR GE YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 456 RCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 515 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470 +Q ++FDP+G +IR W+PEL ++ + IH P+ YP PIV+HK Sbjct: 516 LLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHKDCRDRA 575 Query: 471 LNQYYA 476 LN Y Sbjct: 576 LNAYKE 581 >gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma proteobacterium HTCC2148] Length = 483 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 149/485 (30%), Positives = 228/485 (47%), Gaps = 24/485 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+TD L+AA S VI FI E + + +++ SL + K Sbjct: 8 IYWFRRDLRLTDLPGLHAAL-ASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTK 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S++++G + D+ L++ + ++ + YE + +K L + L Sbjct: 67 SVAEQGGNLLVRR----GDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKS 122 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 ++ P + N + +KV+TPF + +Q L L Sbjct: 123 GAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPSMPLPQKTTFTTNSFLQHS 182 Query: 187 ----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + GE A L++F + Y + RD PA + Sbjct: 183 LTGLSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARDAS 242 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS + G +SPRQ W + + + +L+EL WR+F HL+ +P + Sbjct: 243 SRLSAHFHWGEISPRQAWAAVNKAP----GSNEKDQHKFLSELGWRDFNHHLLFHFPHIA 298 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF P ++ W +AW +G TG+PI+DA MR+L G+MHNR+RMI ASFL Sbjct: 299 D-RPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMICASFLT 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W+ G +F L+D DLA+N+GGWQW A G D+ P+FRIFNP +QGK+FD G Sbjct: 358 KHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKKFDGDG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R WLPEL + + + P L +YP PIVDHK+A L+ Y A Sbjct: 418 EYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEARVAALDAYDA 477 Query: 477 AKKQS 481 K S Sbjct: 478 VSKAS 482 >gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 478 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 160/487 (32%), Positives = 251/487 (51%), Gaps = 25/487 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M++ +V + D R+ DN AL+ A + + V+ V+I I + +++ Sbjct: 1 MTMQKKIIVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSAAKWWLHH 54 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++ VQK L G F + E + S Q +T +++N Y+ + ++ ++ + Sbjct: 55 AIIDVQKQLKALGSTFIIRN----GKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKM 110 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ + +ICK F+ +LL P I YKV+TPF A + ++ + + Sbjct: 111 KMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKW 170 Query: 183 RLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + P + I+ ++ E+ A +KF K+ Y E RD P Sbjct: 171 GSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 230 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFY 298 S L+PYLS G +S + ++ L + + + S++ +LIWREF +L+ Y Sbjct: 231 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + KP E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM A Sbjct: 291 P-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++F Sbjct: 350 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472 D G +IR W+PEL ++P +YIH P + +L YPLP+VDHK A L Sbjct: 410 DKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALC 469 Query: 473 QYYAAKK 479 Y + K+ Sbjct: 470 AYKSMKE 476 >gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V52] gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae O395] gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27] Length = 469 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 206/474 (43%), Positives = 281/474 (59%), Gaps = 10/474 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + ++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + LR+FC+E+V Y + RD PA +GTS Sbjct: 179 SALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLREFCRERVQDYHQARDFPAQEGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+IGVLS RQC RL + + GA +WL+ELIWREFY+HL+A P++ Sbjct: 239 LSPYLAIGVLSARQCVARL--YHESSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKS 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 417 IRRWVPELRSVSSAYIHQPWAYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS 112818] Length = 589 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 249/490 (50%), Gaps = 19/490 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I + C +LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 + I +D + PG + + Y VYTP+ ++ + L Q Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + T N + + M+P GEQ A LR+F + Y Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579 Query: 472 NQYYAAKKQS 481 +Y A + S Sbjct: 580 AKYKKAAQGS 589 >gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis str. 'Ames Ancestor'] Length = 469 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 154/477 (32%), Positives = 245/477 (51%), Gaps = 22/477 (4%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K L Sbjct: 2 FQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKKQLE 55 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VI 132 G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ +I Sbjct: 56 ALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--- 189 CK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 ++ ++ E+ A ++F K+ Y E RD P S L+PYL Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 S G +S + ++ L + + + S++ +LIWREF +L+ YP KP Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YKPLN 290 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK LL+ Sbjct: 291 KSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIP 350 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +IR W Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKW 410 Query: 429 LPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 411 VPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467 >gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342] Length = 476 Score = 314 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 159/490 (32%), Positives = 248/490 (50%), Gaps = 27/490 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ M + D R+ DN AL+ A + + V+ V++ I + + Sbjct: 1 MQNKIIMM-----FQKDFRLYDNPALFEAAQSGE--VVPVYVQDETF----SIGSASKWW 49 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +++ VQK L G + ++ E + S Q +T +++N Y+ + ++ + Sbjct: 50 LHHAIIDVQKQLEALGSTLIIRK----GNTQEEILSLIEQLNITAVYWNSCYDPDRLKSN 105 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++ L+ + +ICK F+ +LL P I YKV+TPF A + ++ + + Sbjct: 106 QKMKIVLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQR 165 Query: 180 PAIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + I+ ++ E+ A +KF K+ Y E RD Sbjct: 166 IKGGSSLPASLSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDF 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLM 295 P S L+PYLS G +S R ++ L + + + S++ +LIWREF +L+ Sbjct: 226 PNENAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH P + L YPLP+VDHK A Sbjct: 405 EKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18] Length = 476 Score = 314 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----PMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLETLGSTLIIRK----GNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKSMKE 474 >gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 465 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 196/469 (41%), Positives = 269/469 (57%), Gaps = 5/469 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+W R DLR+ DN AL A+ AV+ W +H +S + I L ++ Sbjct: 1 MNLMWFRADLRVADNPALCASMQA--GPTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L+ + CSNF L S+ + ++ +++N ++EINE K + LQ Sbjct: 59 ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + SF+D + PG + + YKV+TPF+K + P P + P+ Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 T S P ++P GE A L +F K+ + Y E RD PA+ GTS LSPY Sbjct: 179 TSSIAPLQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSPY 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G +S RQC + ++ + GA +WL+EL+WR+FYRHL+ YP +C K F Sbjct: 239 LAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQ 298 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 TE++ W DS LL AW++G TGFPI+DAAM+QL GWMHNRLRMITA FL K L VD Sbjct: 299 QNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFVD 358 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE++FM L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH+ Sbjct: 359 WRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHY 418 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 LPEL N+ + IH+P + S YP PIVDH A T + Sbjct: 419 LPELKNLSNKAIHSPSVIEAE---SCGYPKPIVDHSTAVKQTKAWFKEL 464 >gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN] Length = 499 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 170/494 (34%), Positives = 249/494 (50%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVW R DLR TDN ALY A + + +V VF+ W+ R+ Sbjct: 13 TGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQPQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 I +L ++ ++L G + D + + + V +F N YE + Sbjct: 72 IELILGALGELDEALRANGGGLIVL----YGDPADLVPKLADELGVDAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + + L +F D V+ +L + + V+TP++ A ++ L DL+ Sbjct: 128 ARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLTAFDLKP 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV + PS + R P + P G A +L ++ Sbjct: 188 YPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLD-DFATRIDS 246 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y ++RD PA +G S LS +L G +S R + L G+ +WL+ELIWR+ Sbjct: 247 YKDRRDFPAAKGPSYLSIHLRFGTVSIRTL---ARLAHEMSLQPDGEGSTTWLSELIWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 304 FYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L +YP PI Sbjct: 424 RIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAEARARTLARF 497 >gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245] Length = 473 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 223/483 (46%), Gaps = 28/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ DN +LY A V+ V+I + +++ SL + + Sbjct: 7 IHWFRQDLRLEDNPSLYYAAL--KGSVLPVYILDDRNAGDFRMGGANRWWLHHSLESLNR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + D +E L + TK+++NR YE + RD L+ +L+ + Sbjct: 65 SLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLREQ 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +S++ S+L P + YKV+TPF + + + + P Sbjct: 118 GITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAASPRMPLPLPVKLDCPSPPE 177 Query: 190 PSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + ++P + IGE AL L F K + Y E RD PA S+ Sbjct: 178 ESLPLEALGLLPRIRWDRQLEPHWTIGENGALERLAIFLKHGLPGYREGRDFPARPNVSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP L G +SP Q W+ + +EL WREF L+ P + Sbjct: 238 LSPSLHFGEISPNQAWHGAIAAGSG------IDLDHFQSELAWREFSYSLLYHNPGLPEK 291 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 ++ W ++ L W+QG TG+PI+DA MR+L G+MHNR+RM+ SFLVK+ Sbjct: 292 N-LQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAGSFLVKN 350 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W GE +F L D DLA N+ WQW A G D+ PYFRIFNP QG++FD G++ Sbjct: 351 LLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKFDADGSY 410 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R +LPEL +P +Y+ +P YP PIVD K + L Y + Sbjct: 411 TRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSRRQALEAYALTR 470 Query: 479 KQS 481 S Sbjct: 471 NHS 473 >gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652] gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652] Length = 482 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 160/479 (33%), Positives = 240/479 (50%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DNKAL AA H S +I+++I PE + A QS +++ SL + Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++ +++ L S Q +F+NR+Y+ + D +E L+ + Sbjct: 69 SLRKRRGGLLL----ASGEALGVLRSLIRQSDADAVFWNRRYDPPGISIDAHIEHELEKQ 124 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLT 185 I LL S L + Y+VYTPF +AL +++ + + + Sbjct: 125 AIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSKLQLASKLPGS 184 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + ++ GE+ A LR F ++++ Y E RD PA TS L Sbjct: 185 EKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSML 244 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L++G +SP + W+ + L + E+ WR+F HL+A +P + Sbjct: 245 SPHLALGEISPARIWDATRGLSKHLPAA---DIVHFRKEIAWRDFSYHLLAHFPRLATAN 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 ++ EW AW +G TG+PI+DA MRQL GWMHNR+RMI ASFL+KDL Sbjct: 302 W-DDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +VDWR GE +F L+D D A+N WQW A +G D+ P+FR+FNP +QG++FDP G F+ Sbjct: 361 MVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFV 420 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R +PEL + +YIH P L YP P+VDH A L Y A + Sbjct: 421 RSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 479 >gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579] gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4] Length = 476 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474 >gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319] Length = 475 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 238/479 (49%), Gaps = 20/479 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R D R+ DN AL+ A + V+ V+I + + + + +++ +L + Sbjct: 6 IVWIRKDFRLVDNPALFHAAK--EGMVVPVYIHDD--YEESSMGSASKWWLHHALNDFKN 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ + + + + L Q +++NR+YE + ++RDK L+ + Sbjct: 62 SIEKIQGTLIVQK----GNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQ 117 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186 I + L P I YKV+T + KA ++ V + ++ + + + Sbjct: 118 QINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVES 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + I + E+ A+ + + F K K+ +Y + RD PA S LS Sbjct: 178 LSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFLS 237 Query: 247 PYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PY + G LS R ++ L+ + + A ++ +LIWR+F L+ +P + Sbjct: 238 PYFATGQLSARVLYHYLRTKAEKVSSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTT-E 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P ++ +W + LQAWK G TG+P++DA MR+L G+MHNR+RMI ASFLVK L Sbjct: 297 PLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLVKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G +F L+D DLA+N GWQW A +G D+ PYFRIFNP Q ++FD +G +I Sbjct: 357 LIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + WLPEL ++P+ YIH P L+ YP PIVDHK A L Y K Sbjct: 417 KKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARERALEHYQHIK 475 >gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter baumannii AYE] Length = 498 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 193/486 (39%), Positives = 271/486 (55%), Gaps = 17/486 (3%) Query: 5 TAMSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 T MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 17 TCMSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYL 74 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L +QK LS I + + ++ + + + ++ N + +NE++RDK Sbjct: 75 RQLRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKT 134 Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQAD 173 ++ L H F D + P SI N + Q Y+V++ F+KA L Sbjct: 135 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 194 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYV 231 + VP L G + + + +P+GEQ AL L +F ++ V +Y Sbjct: 195 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYK 254 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY Sbjct: 255 VERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFY 314 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHN Sbjct: 315 QHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHN 374 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 375 RVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNP 434 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + Sbjct: 435 IAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAI 492 Query: 472 NQYYAA 477 + Sbjct: 493 ETFKNI 498 >gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15] Length = 595 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 249/486 (51%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN AL A ++ +IA++ +P+ W H + + F SL Sbjct: 104 VHWFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEV 163 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ I + + + S + + L+ N +YE++E+RR+ L + L Sbjct: 164 LRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLL 223 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + D+ ++PPG + + Y VY+P+ +A +++L P+ Sbjct: 224 AENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNP 283 Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 FD Q + M+P GE A L F K ++ Y Sbjct: 284 ASAREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAA 343 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291 +R+ PA GTS +S +L+ G LS R + + L G +W++E+ WR+FY Sbjct: 344 KRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFY 403 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQL GWMHN Sbjct: 404 KHVLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHN 463 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KD L+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR+FNP Sbjct: 464 RCRMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNP 523 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + IH P+ + YP P+VDHK Sbjct: 524 LLQSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERA 583 Query: 471 LNQYYA 476 L Y Sbjct: 584 LKAYKE 589 >gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W] gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201] gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 476 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRKGST----QEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus 03BB102] gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102] Length = 476 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ VQK Sbjct: 6 IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ ++++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTQEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I+ ++ E+ A +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIRWTSHIELIWEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ + IWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LL D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + + YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143] gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143] Length = 477 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 236/479 (49%), Gaps = 23/479 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC + +I V+I + Q + +++ +L + S Sbjct: 1 MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADLNAS 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q ++Q D++ L Q + +NR YE + RD ++ L+ Sbjct: 59 LKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESG 111 Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-----T 185 + + L P +L YKV+TP+ + + V P +++ Sbjct: 112 LDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVDSGD 171 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +++ + I E A L +F ++ Y E R+ PA Q S+L Sbjct: 172 SLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNVSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G +SP W R E I + ++++EL WREF +L+ +P + Sbjct: 232 SPYLHFGQISPNSAWYRAAEA--GAFINNEQSLDTFMSELGWREFSYYLLYHWPKLPTEN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + N L AW+QG TG+P++DA MR+L + G+MHNR+RM+ SFLVK+L Sbjct: 290 LQTRFDLFPWANNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVKNL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W GEE+F L+D DLASN+ WQW A G D+ P+FRIFNP Q ++FD QG++I Sbjct: 350 LIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSYI 409 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL ++P +YIHAP + ++ +NYP P+VD K + L + K Sbjct: 410 RRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALEAFAVTK 468 >gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223] Length = 499 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 193/482 (40%), Positives = 276/482 (57%), Gaps = 14/482 (2%) Query: 10 HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q FI + Sbjct: 22 ALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI+F+ Q F D ++ YC QQ ++++F E+ + + Sbjct: 82 LLAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPEINEQQRDQAC 138 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +Q + ++ LL PG++LN + MYKV+TPF + + + A LP+P G Sbjct: 139 IQVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV P F+ + ++ GE A IL F ++KV Y + RD P+I GTS +S Sbjct: 197 PVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPSIDGTSSIS 256 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + Sbjct: 257 PYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHN 316 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL Sbjct: 317 FNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 377 IDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIR 436 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LPEL + + +H P + + YP IV+H A L KK Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRALTVLGVLKKA 496 Query: 481 SL 482 + Sbjct: 497 AA 498 >gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51] Length = 473 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 194/476 (40%), Positives = 278/476 (58%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA +A+++ +P QWR H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATER--GPTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L + I + +D + + + C Q +V + +N +Y INE RRD K L+ Sbjct: 59 RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S+ D +L PG+IL + ++V++ F+K +++L ++ + Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAALK 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ F+ +A+ +P GE +A L +F E + Y++ RD+PA+ GTSQ Sbjct: 179 IHSDPIPQDIDGFEKTPRALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPAMPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP Q +RFDP+G F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRFDPEGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHWLPEL ++ + IH P D +Y PIVD + L + ++ Sbjct: 419 IRHWLPELRDIDEKTIHGPMKSTDLF-AGNSYHNPIVDLGSSRQRALEAFKGLPRR 473 >gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH820] Length = 476 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHDETF----SMGSASKWWLHHAIIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + S E + S Q +T +++N Y+ + ++ ++ ++ L+H+ Sbjct: 60 QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + PV+ Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A ++F K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WN + LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific [Vibrio cholerae V51] Length = 469 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 202/473 (42%), Positives = 277/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL A ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 511 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 105/481 (21%), Positives = 184/481 (38%), Gaps = 27/481 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ L AA H + +I ++I PE W+Q ++ R HF + L+ + K Sbjct: 7 IVWFKRDLRVQDHAPLLAASHT-NRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G +++ + + LF + + + L Sbjct: 66 DLTDLGQPLII----AVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAGLCSD 121 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + P ++ + + + + +P P Sbjct: 122 LE----IPFHEYPSNGVVRRLKSRDVWSRIRNERMADRISPKPTKLVPFPKCASAPLPPK 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSPY 248 + + + G A+ L+ F + Y+ P S+LS + Sbjct: 178 HD----PIFGAALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEMYCSRLSAH 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L++G LS R+ + + L ++ + + WR + + PS+ Sbjct: 234 LALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKIEDQPSIETC 293 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + E + QAW G TG+P IDA MR L + GW+ R+R + SF Sbjct: 294 CMHPAFEGIREDEHNDAYFQAWAAGQTGYPFIDACMRNLVSEGWITFRMRAMLVSFASYH 353 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWRI ++ D + + Q +G + R++NP Q + DP G F Sbjct: 354 LWLDWRITGKHLARVFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSQEHDPTGKF 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL VP ++IH P W + +L +YP PI+DH+ A + + Sbjct: 412 IRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAARQAKKRISDVR 471 Query: 479 K 479 K Sbjct: 472 K 472 >gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624] Length = 501 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 188/479 (39%), Positives = 266/479 (55%), Gaps = 9/479 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLRNDLR+ DN AL+AA VIAV++ + I+ + F L + Sbjct: 2 TALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLL 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ I Q + + + L ++ F+N +Y ++E+ RD+ + + L+ Sbjct: 61 TTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLR 120 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + K D V++PPG + N A YKV+TP+++ +Q LR + PA + P Sbjct: 121 AQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALP 180 Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 ++ + + +P GE A L++F + + +Y QRD+PA+ GTS Sbjct: 181 CPSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG LSPRQ + +G +W++ELIWREFY+HL+ YP VCM Sbjct: 241 GLSPYLAIGALSPRQALAAVLSRT-GGDWNANAGVSTWISELIWREFYQHLVVDYPQVCM 299 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + TE W + W+QG TG PIIDAAMRQLN GWMHNRLRM+ A FL K Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 FIR W+PEL + + IHAPH L + YP P+VD + T+ + + + Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVDLGASRKATIALFASLGQAPA 476 >gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus clavatus NRRL 1] Length = 586 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 167/489 (34%), Positives = 255/489 (52%), Gaps = 19/489 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A + +I ++I +P+ H S + +L Q Sbjct: 96 VHWFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQ 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ I D + + C + V +F N +YE++E+RR+ L + Sbjct: 156 LKRDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMC 215 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I ++ D+ ++ PG++ + + Y VY+P+ +A + +L + Sbjct: 216 AQNGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNP 275 Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + F D + ++P GE AL L KF +E+V Y + Sbjct: 276 GNARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYAD 335 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R++ Q TS LSPY + G LS R ++ L + G SW++E+ WR+FY+ Sbjct: 336 ARNMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYK 395 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D + AW +G TGFPI+DAAMRQ+ WMHNR Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNR 455 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 456 ARMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR WLPEL + +H P++ N YP PI++H K+ L Sbjct: 516 RQSERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQAL 575 Query: 472 NQYYAAKKQ 480 ++ A + Sbjct: 576 ERFKRASEN 584 >gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5] Length = 481 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 191/473 (40%), Positives = 270/473 (57%), Gaps = 7/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN AL A +AV++ +PEQW H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNTALSA--AAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + I + ++ + + L C Q +V L +N++Y I+E RRD + + LQ Sbjct: 59 STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H I L PGS+L + ++V++ FRK L A + P +L Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P+ F P QA+ ++P G+ A L KF E+++YY +RD PA GTSQ Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW++STG DS PYFRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+HWLP+L + + IH P + + YP PIVD ++ L + A Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKAL 470 >gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 485 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 239/487 (49%), Gaps = 18/487 (3%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++ S ++W R DLR+TDN AL AA NS +I V++ + ++ S Sbjct: 2 SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYLRETGAGAPREMGGASRWWLNKS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + + + + +F+NR+Y + E D ++ Sbjct: 61 LASLGASLEAIGGKLTLRTGP----AEKIIPALVEETGAAAVFWNRRYGLPERETDAAIK 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP 180 K L+ + C+SF+ +L+ P + + YKV+TPF +AL Sbjct: 117 KTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYKPPAFIPSPKKIAG 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A T + + I + GE A L F V YV R++P + Sbjct: 177 ASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPGVS 236 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSP+L G + P Q W ++ ++ + A +L+E+ WREF L+ + P Sbjct: 237 TGTSRLSPHLRFGEIGPAQIWRAVRAR-LEAQQADEDSARVFLSEIAWREFSYTLLYYNP 295 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + ++ W KD AW +G TG+PI+DA MR+L GWMHNR+RMI AS Sbjct: 296 ALATEN-YNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIVAS 354 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+ W+ GE++F L+D D A+N WQW A +G D+ PYFR+FNP QG++FD Sbjct: 355 FLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQKFD 414 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 G ++RHW PEL +P +Y+HAP + L +YP PI+DH L+ Sbjct: 415 EDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRALDA 474 Query: 474 YYAAKKQ 480 Y A K++ Sbjct: 475 YKAMKEE 481 >gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 446 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 230/433 (53%), Positives = 306/433 (70%), Gaps = 4/433 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + ++C Q V+ LFYN QY+ NE +RD +EK Sbjct: 61 ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417 Query: 426 RHWLPELNNVPTQ 438 R WLP L ++P + Sbjct: 418 RQWLPALRDMPWK 430 >gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15] gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676] Length = 476 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YI+ P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474 >gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016] Length = 471 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 203/475 (42%), Positives = 278/475 (58%), Gaps = 10/475 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE RD+ L R Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIR 183 L + +D + PG +LN +KV+TPF+KA +++ + + P + Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFIPPQIIKTSAAQPVVL 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + + Q LR+FC E+V Y EQRD PA GTS Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEAWSVDSQQIRETLRRFCHEEVDRYHEQRDFPATAGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG +S RQC RL +G WL+ELIWREFY HL+ F P + Sbjct: 240 VLSPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 GQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGE 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F++HWLPEL VP++++H P WL L +YP P+VDHK+ TL+ Y AK Sbjct: 416 FVKHWLPELAEVPSKFVHQPWKWLGHMRL--DYPAPMVDHKQEREITLSLYTQAK 468 >gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183] gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175] Length = 503 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 196/492 (39%), Positives = 278/492 (56%), Gaps = 20/492 (4%) Query: 6 AMSV------HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISAR 56 +MS+ L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Sbjct: 17 SMSIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPI 76 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 Q FI + + + L+ GI F+ Q F D ++ YC QQ ++++F E Sbjct: 77 QLDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPE 133 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + + +Q + ++ LL PG++LN + MYKV+TPF + + + A Sbjct: 134 INEQQRDQACIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAI 191 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 LP+P GPV P F+ + ++ GE A IL F ++KV Y + RD Sbjct: 192 LPLPVPAPLGPVLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDF 251 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI GTS +SPYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ Sbjct: 252 PAIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLV 311 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ Sbjct: 312 AFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMV 371 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q + Sbjct: 372 VASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSE 431 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH------APHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +FDP G+FIR +LPEL + + +H P + YP IV+H A Sbjct: 432 KFDPDGSFIRKYLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARA 491 Query: 471 LNQYYAAKKQSL 482 L KK + Sbjct: 492 LTVLGVLKKAAA 503 >gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 476 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQ+ Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHDETF----SIGSASKWWLHHAIIDVQR 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + +E + S Q +T +++N Y+ ++ ++ ++ L+ + Sbjct: 60 QLEAVGSTLIIRK----GNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I CK F+ +LL P I YKV+TPF A + +V + + + P + Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L ++ + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ] Length = 468 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 276/475 (58%), Gaps = 14/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR+DLR+ DN+AL AA +A+++ +P QWR H + + F +L ++ Sbjct: 3 QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ G+ + +D++ L C +Q + ++ N +Y ++E RRD +E+ LQ Sbjct: 61 HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + D +LL P S+ + ++++ FR+A L + +P + V Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180 Query: 189 TPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P F P +++ ++P GE A L +F + ++ Y E RD PA GTS+L Sbjct: 181 VGNAVPAALEGFATPPESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSRL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSPRQC + + + A +W +EL+WREFY+H++A +P V MG+ Sbjct: 241 SPYLAAGVLSPRQCLHAVLR----TGGFDRPEASAWFDELLWREFYKHILAGHPRVSMGR 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 TE + W L AW+QG TGFP+IDAAMRQL GWMHNRLRM+ A FL K+L Sbjct: 297 ALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSKNL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q +RFDP+G FI Sbjct: 357 LIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGRFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL ++ + IHAP L YP PIVD + L + A +++ Sbjct: 417 RQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRR 467 >gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2] Length = 474 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 158/487 (32%), Positives = 236/487 (48%), Gaps = 32/487 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL AAC + K+I ++I + + +++ SL + Sbjct: 1 MWFRQDLRVKDNPALNAACD--EGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQHR 130 L + + D + + +++NR YE ++ RDK + ++ L + Sbjct: 59 L---NGHLKVFK----GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 S + S+L P +L Y+V+TP+ + N+ P I Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171 Query: 191 SNIPRFFDY------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + GE A L+ F + Y + RDIP+ Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS LSP+L G +SP Q W +K+ F K ++L+EL WREF +L+ + Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFETSEDK---SIDTYLSELGWREFSYYLLYHF 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ F +K W D+ L+AW+ G TG PI+DA MR+L G+MHNR+RMI Sbjct: 289 PTIPTKN-FNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL+ W+ GE +F L+D DLASN GWQW A TG D+ PYFRIFNP +QG++F Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D QG ++R + PEL ++P +YIH P L YP PIVD K + L+ Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALD 467 Query: 473 QYYAAKK 479 + A K+ Sbjct: 468 AFQALKE 474 >gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter calcoaceticus RUH2202] Length = 480 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 264/479 (55%), Gaps = 15/479 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D+ AL+ AC I + I +PEQW+ H + + +F L Q++ Sbjct: 6 QLIWFRQDLRVRDHAALWHACQQ--GPSIGLIILSPEQWKIHHDAPIKINFYLRQLQQLK 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q I + D +++ Q + ++ N + +NE++RDK++++ L Sbjct: 64 KELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQ 123 Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + F D + P SI N + Q Y+V++ F+KA L + L + Sbjct: 124 QSKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYP 183 Query: 189 TPSNI----------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + F + ++P GE AL L F + + +Y +RD P Sbjct: 184 QSFSNIKSLGLEDIEAFFDSSIPKEQQDLWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTSQLSPYL++G+LS RQC L G +WL+EL+WREFY+H++ + Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T+ I+W + L AW+ G TG PIIDA MRQL GWMHNR+RMITA Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q K+F Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G +IR W+ EL ++ + IH P+S K L LNYP PIVD K+ + + Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKETRIKAIETFKNI 480 >gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum VaMs.102] Length = 589 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 20/485 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR++DN +L A ++ +IA++I +P+ + H + + F +L Sbjct: 97 VHWFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAHLTAPIRVDFTLRTLEI 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 ++ L++ I + + + T LF N +YE++E R KL+ Sbjct: 157 LKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANMEYEVDELRREAKLVRTF 216 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ D+ ++PPG + + Y VYTP+ ++ ++++ + R Sbjct: 217 ADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDRLELFDHPNKNP 276 Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 F + +FP GE A L KFC + Y + Sbjct: 277 SSAKERFGNLFASEIPEEVPNKTLGAEEKKRFRALFPAGEHAARERLDKFCDGSISSYAD 336 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP GTS LS +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 337 RRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGNGGIQTWISEVAWRDFY 396 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P IEW+ + +AW +G TGFPI+DAAMRQ+ +GWMHN Sbjct: 397 KHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPIVDAAMRQMIHVGWMHN 456 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL KDLL+DWR+GE +FM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 457 RCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 516 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL V + IH P+ YP PIV HK Sbjct: 517 LLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKKGYPEPIVAHKDVRERA 576 Query: 471 LNQYY 475 L +Y Sbjct: 577 LTEYK 581 >gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 486 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 193/492 (39%), Positives = 281/492 (57%), Gaps = 29/492 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Sbjct: 1 MS-DILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLK 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q + L++ GI + + ++F+D L + C Q T ++ N + E V ++ Sbjct: 58 QFESQLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPE---VDEQLRDKRL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180 + + K D +LP GS+LN +M+KV+TPF+ A ++ + + P Sbjct: 115 IATGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGS 174 Query: 181 -----------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 + + +P+ + ++ F Sbjct: 175 AQAGSSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFL 234 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 KV Y RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLN Sbjct: 235 ANKVNDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLN 294 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 ELIWR+FY+HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL Sbjct: 295 ELIWRDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQL 354 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ Sbjct: 355 VETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQ 414 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFRIFNP Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+H Sbjct: 415 PYFRIFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEH 474 Query: 464 KKACHHTLNQYY 475 K+A L + Sbjct: 475 KEARLRALAFFK 486 >gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D] Length = 518 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 242/489 (49%), Gaps = 29/489 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + + R+ FI AS+ Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKADRRVEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + Q V +F N E + RD+ + K Sbjct: 79 EELRGALREAGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182 L Q F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPYFG 194 Query: 183 ----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+ + + + + L +E++ Y +RD PA Sbjct: 195 ALARPPEALAQPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPA 254 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R R + GA +WL+EL+WR+FY ++ Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHAAMLRGS----RGAATWLSELVWRDFYFMILHHR 310 Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLRM Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRM 370 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL +DWR GE+YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 430 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +YIHAP + L YPLPIVDH A Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARAA 490 Query: 470 TLNQYYAAK 478 TL++Y K Sbjct: 491 TLDRYAVTK 499 >gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8] Length = 473 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 165/479 (34%), Positives = 236/479 (49%), Gaps = 23/479 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S LVW R DLR D+ ALY A S +V VF+ + Q + R+ FI+ S+ Sbjct: 4 STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L Q+G + + + +F N YE + + RD + ++ Sbjct: 63 ELKTALQQRGSDLIVLH----GSAQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQ 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAI 182 LQ I + D + +L A + Y V+TP++ A ++ + Sbjct: 119 LQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPVEHYLNK 178 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P F + + + + L E++ +Y E RD PA++G Sbjct: 179 LAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFIERIKHYKEARDFPAVKGV 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS +L G +S RQ + GA +WL+ELIWR+FY ++ P + Sbjct: 239 SYLSVHLRFGTISIRQLARTAMQIGG-------FGAETWLSELIWRDFYFQILHHNPQLE 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 GK F E I + + L AW +G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLV Sbjct: 292 AGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL+DWR GE YF L+D D ++NNGGWQWAASTG D+ P+FRIFNP Q +RFD G Sbjct: 352 KDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDGHG 411 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++ EL + IHAP + + NYP PIVDH L+ Y Sbjct: 412 KFIRKYVAELAQCNDKEIHAPWLMSAQRQSSINTVIGQNYPKPIVDHATQRERVLSLYK 470 >gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 484 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 20/475 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ + LV R DLR+ D+ AL AA A V+ V+I E + + + Sbjct: 1 MPLSSRAAPALVLFRRDLRLADHPALSAAAETG-APVLPVYILDDETPGRWRMGGASRWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +Y SL + L +G ++ L + + + R YE + + Sbjct: 60 LYQSLRSLGADLEARGSRLVLRH----GETKRVLGELIEETGARSVLFTRGYEPYQRALE 115 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174 L+ L+ R + + F +L+ P SI N A + ++V+TPF +AL Q + A Sbjct: 116 GRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPATPLPAPQ 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + + + + I + GE A L F + + Y +R Sbjct: 176 KLAAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFIEAALPSYRTRR 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P I GTS+LSP+L+ G + PRQ W+ ++ + A ++L E+ WREF HL Sbjct: 236 DEPGIDGTSRLSPHLAFGEIGPRQIWHAVQ--AAAEAAGDHAAADAYLREVGWREFSYHL 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + PF P W D+ L+AW++G TG+PI+DA MRQL GWMHNR+R Sbjct: 294 LFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVR 352 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFL+K LL W+ G ++F L+D DLA+N WQW A +G D+ PYFRIFNP +Q Sbjct: 353 MIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463 G++FDP+G ++R ++PEL +P IH P + L +P PIVDH Sbjct: 413 GEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIVDH 467 >gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 511 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 174/485 (35%), Positives = 231/485 (47%), Gaps = 27/485 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLR DLR+ D+ AL+ A ++ KV FI + R+ FI+ ++++ Sbjct: 33 ALVWLRRDLRLDDHAALHHALRSAK-KVWCAFIFDTTILDALPRADRRVEFIHHGIVELD 91 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G D ++ + + V + NR YE V RD + L H Sbjct: 92 GLLRAHGSGLIVRH----GDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVRGALAH 147 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S D V+ IL A + V+TP++ A ++ L P R G + Sbjct: 148 AGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDG--YYLRAYPVQRHIGAL 205 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK-------FCKEKVYYYVEQRDIPAIQG 241 P P P LH E++ Y + RD PAI+G Sbjct: 206 APVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFLERIDRYADTRDFPAIKG 265 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS +L G +S RQ E V GA WL+ELIWR+FY ++ +P V Sbjct: 266 PSYLSVHLRFGTVSIRQLARLAHERMVGGS----RGAEVWLSELIWRDFYHQILHHHPRV 321 Query: 302 CMGKPFIPWT--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + L AW +G TG+PIIDAAM QLN G+MHNRLRM+ AS Sbjct: 322 VTHCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNRLRMVVAS 381 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL +DWR GE YF QL D DLA+NNGGWQWAASTG D+ PYFRIFNP Q RFD Sbjct: 382 FLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPISQSLRFD 441 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +G FIR +LP+L ++ IHAP L +YP+P+V+H +A TL + Sbjct: 442 AEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKLGRDYPMPVVEHAEARELTLAR 501 Query: 474 YYAAK 478 + A K Sbjct: 502 FAAVK 506 >gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa] gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A] Length = 642 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 174/498 (34%), Positives = 253/498 (50%), Gaps = 33/498 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L Sbjct: 138 VHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEV 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L GI + + + LF +YE++E+RR+ L K L Sbjct: 198 LKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLL 257 Query: 128 QHRVICKSF-----DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + D+ ++ PG++ + + Y VY+P+ +A I+++ + Sbjct: 258 AEGEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLEIYEKP 317 Query: 183 RLTGPVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVY 228 P T F ++P GE AL L KFC E + Sbjct: 318 GPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIG 377 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIW 287 Y E+R+IPA+QGTS LS + + G LS R ++ L G W++E+ W Sbjct: 378 KYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAW 437 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+FY+H++ +P VCM KPF P IEW+ + AW QG TGFPIIDAAMRQ+ + G Sbjct: 438 RDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTG 497 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRMI ASFL KDLLVDWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR Sbjct: 498 YMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 557 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVP------TQYIHAPH----SWLDKNDLSLNYP 457 +FNP +Q ++FDP G +IR W+ EL ++P IH P+ + K YP Sbjct: 558 VFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGYP 617 Query: 458 LPIVDHKKACHHTLNQYY 475 PIV+H A L+ Y Sbjct: 618 RPIVEHSGARDRALDAYK 635 >gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W] Length = 476 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200] Length = 476 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEAF----SMGEASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S + +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I+ M+ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FAVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYKSMKE 474 >gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans LB400] Length = 499 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 249/494 (50%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVWLR DLR TDN ALY A + + +V VF+ W R+ Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A+L ++ ++L G + + E + + V +F N YE + Sbjct: 72 IEFILAALGELDEALRADGGGLIVL----YGNPAELVPKLADELGVDAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD + +RL +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 128 ERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLKP 187 Query: 177 LPVP-------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV A+ + + P + P G A +L F Y Sbjct: 188 YPVETYAKRLAALPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDFMTRIDSY 247 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 ++RD PA +G S LS +L G +S R + L G+ +WL+ELIWR+ Sbjct: 248 A-DRRDFPAAKGPSYLSIHLRFGTVSIRTL---ARLAHEMSLQPDGQGSATWLSELIWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 304 FYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L +YP PI Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLADCGVVLGKDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAEARARTLARF 497 >gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6] Length = 471 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 203/475 (42%), Positives = 276/475 (58%), Gaps = 10/475 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L Sbjct: 1 MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ I Y + ++ S + ++ Q V+++ NR+YE+NE RD+ L + Sbjct: 60 VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119 Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIR 183 L I +D + PG +LN +KV+TPF+KA +++ V + P + Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVL 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + + Q LR FC E+V Y EQRD PA GTS Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEEWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTS 239 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL+IG +S RQC RL +G WL+ELIWREFY HL+ F P + Sbjct: 240 VLSPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVK 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G+ F+ W + + W W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K Sbjct: 296 GQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 356 DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGE 415 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 F++HWLPEL VP++++H P +W L +YP P+VDHK+ TL+ Y AK Sbjct: 416 FVKHWLPELVEVPSKFVHQPWNWPGHMQL--DYPAPMVDHKQEREITLSLYTQAK 468 >gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4] Length = 481 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 164/485 (33%), Positives = 240/485 (49%), Gaps = 26/485 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62 M+ LVW R DLR D+ ALY A V F+ + + R+ FI+ Sbjct: 1 MTTSSYALVWFRRDLRDFDHAALYHALKAH-THVYCAFVFDTDILDALPDRADRRVEFIW 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++Q++L +G + E + + ++ + ++ NR YE + V RD Sbjct: 60 ESVRELQQALRSQGGDLIVLHAC----AKEAIPALAVKLKANAVYSNRDYEPDAVARDAK 115 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLP 178 + +L I + D V+ +L A + Y V+TP++ A ++ L Sbjct: 116 VAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDR 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 T + + M + L +E++ Y + RD PA Sbjct: 176 YRQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEFQERMARYKDARDFPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R ++ GA +WLNELIWR+FY ++ + Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQHNA-------GAETWLNELIWRDFYFQVLHHH 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHNRLRM+TA Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++F Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D QG FIR ++PEL + IHAP + +YP P+V+H L+ Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALS 468 Query: 473 QYYAA 477 Y A Sbjct: 469 LYKNA 473 >gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Ralstonia sp. 5_7_47FAA] Length = 518 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 170/489 (34%), Positives = 243/489 (49%), Gaps = 29/489 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + S R+ FI AS+ Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKSDRRVEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + Q V +F N E + RD+ + K Sbjct: 79 EELRGALRETGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180 L Q F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPYFG 194 Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A P+ + + + + L +E++ Y +RD PA Sbjct: 195 ALAKPPEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPA 254 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R R + GA +WL+EL+WR+FY ++ Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHASMLRGS----RGAATWLSELVWRDFYFMILHHR 310 Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLRM Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRM 370 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQS 430 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +YIHAP + L YPLPIVDH A Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARAA 490 Query: 470 TLNQYYAAK 478 TL++Y K Sbjct: 491 TLDRYAVTK 499 >gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2] Length = 505 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 165/494 (33%), Positives = 227/494 (45%), Gaps = 31/494 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK LVWLR DLR DN ALY A + +V VF+ PE + R+ F Sbjct: 1 MKNGID--NALVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEF 57 Query: 61 IYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 I S++ V L G ++ + ++ + E Sbjct: 58 IRDSVVGVDAELRALAASHGIDGAGLIVRH----GRPLQEIPRLAAALGAQAVYASHDDE 113 Query: 114 INEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD + L I D V+ +L + V+TP+R A ++ L Sbjct: 114 PEALARDARVRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDF 173 Query: 173 DLRSLPVP----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 L S PV A+ + + + L E+V Sbjct: 174 YLSSYPVERHAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFLERVD 233 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +Y + RD PA++G S L P+L G +S R+ + GA WL+EL+WR Sbjct: 234 HYADWRDFPAVKGPSYLGPHLRFGTVSIRRLAREAHQRLTAGS----RGAEVWLSELVWR 289 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 +FY L+ +P V G + + L AW +G TG+PI+DAAM QL Sbjct: 290 DFYHQLLHHHPRVVGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRT 349 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRMI+ASFL KDL +DWR GE +F L D DLASNNGGWQWAASTG D+ PYF Sbjct: 350 GYMHNRLRMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYF 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPI 460 RIFNP Q +RFDP+G FIR +LP+L +P +HAP L +YP P+ Sbjct: 410 RIFNPVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYPAPV 469 Query: 461 VDHKKACHHTLNQY 474 V H++A TL ++ Sbjct: 470 VAHEEARERTLARF 483 >gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans DMS010] gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans DMS010] Length = 464 Score = 312 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 191/472 (40%), Positives = 272/472 (57%), Gaps = 10/472 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVWLRNDLR+ DN A+ A D + VFIATP+QW+QH SA + AS+ Sbjct: 3 PTQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ G+ F + F D + L ++C Q+ + +++N++ ++E RRD + L Sbjct: 61 INQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVL 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D+ L+ +L + +KV+TP+ + +Q L + PVP + Sbjct: 121 EGFGVNCHALDADLIVTVPVLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEAI 180 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + D ++P E + L L +FC+ KV Y + RDIPA GTS LSP Sbjct: 181 AVDLLKPGW---SDDYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLSP 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YLSIG + PR+ ++ + + + WL EL WR+FYR L+ +P + M KPF Sbjct: 238 YLSIGRIGPRRLLASIQYHCSEQGLHWQDND--WLRELAWRDFYRQLLLHFPRLSMEKPF 295 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P T+ + W D AW +G TGFPI+DAAMRQL GWMHNRLRMITASFL K LL+ Sbjct: 296 KPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLLI 355 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE++FM LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR Sbjct: 356 DWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIRR 415 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL + + IH P D+ YP+PI+D+K A ++ + K Sbjct: 416 FVPELKKLSGKQIHNP---SDQLRTETGYPMPIIDYKPARQTAIDAFADLKN 464 >gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 476 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 478 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 151/484 (31%), Positives = 235/484 (48%), Gaps = 25/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQ-HGISARQSHFIYAS 64 M+ +VW R DLR++DN AL+ A V+ V+I P+Q H + +++ S Sbjct: 1 MTT-IVWFRQDLRVSDNPALHEATRR--GPVLPVYILETPDQSGDEHPLGGASRWWLHHS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ L + + + +++NR YE + + RD L+ Sbjct: 58 LAALKEDLPGL--------VFLRGSARHLIPELVQETGADAVYWNRCYEPHAIERDSALK 109 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVP 180 + L+ +I KSF S+L P + YKVY+PF KA + V L + Sbjct: 110 ESLKTDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISVPDPLPAPAEINFT 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A ++ + + + ++ G A L +F + Y ++R+ P + Sbjct: 170 AYDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLP 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSP+L G +SP+Q W+ + G +E+ WREF HL+ YP Sbjct: 230 NVSRLSPHLHFGDISPKQVWSATQHATARKSSLSSDGHKFL-SEIAWREFSYHLLYHYPQ 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P + W + L+ W+ G TG+P++DA MR+L G+MHNR+RM+ SF Sbjct: 289 LPEKNW-RPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK L + W+ GE +F L+D DLA+N+ WQW A +G D+ PYFRIFNP QG +FDP Sbjct: 348 LVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474 G ++R W+PEL +PT+++ +P L YP PIVDH KA L+ Y Sbjct: 408 DGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGY 467 Query: 475 YAAK 478 K Sbjct: 468 EDVK 471 >gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus G9842] Length = 476 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I+ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474 >gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans CJ2] gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas naphthalenivorans CJ2] Length = 477 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 163/487 (33%), Positives = 238/487 (48%), Gaps = 28/487 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ DN AL+ A + + +V F+ + R+ FI SL+ + + Sbjct: 1 MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59 Query: 72 LSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 L++ + + +++ L + + V +F N E + RD ++ L Sbjct: 60 LAKLALPAGLLIRHGT----ALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLLEC 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182 V +F D V+ +L A Q Y V+TP++KA ++ + L+ PV Sbjct: 116 AGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASALAA 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 R + + + L +++ +Y + RD PA++G Sbjct: 176 RPADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFLDRMPHYADTRDFPAVKGP 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S L +L G +S R+ + GA +WL+ELIWR+FY ++A +P Sbjct: 236 SYLGVHLRFGTISIRKITLNALAQQQTGSE----GAATWLSELIWRDFYAQILANFPHAA 291 Query: 303 MGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 F P + I W + QAW +G TG+P++DAAM QLN G+MHNRLRM+TAS Sbjct: 292 -SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTAS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDL +DWR GE YF +L D DLASNNGGWQWAASTG D+ PYFRIFNP Q ++FD Sbjct: 351 FLVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSEKFD 410 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 G FIR +LP L +P +H+P L NY P+V H +A TL + Sbjct: 411 ADGKFIRKYLPVLAKLPKAALHSPWLASPMERAAASVALGSNYARPVVAHAEARALTLQR 470 Query: 474 YYAAKKQ 480 Y KK Sbjct: 471 YALVKKS 477 >gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 482 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 234/480 (48%), Gaps = 19/480 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQVQ 69 LVW R DLR +D+ AL A +V F+ E + R+ FI SL+++ Sbjct: 5 LVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESLVELD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L +G + + V +F NR YE +RD + L+ Sbjct: 64 AALRTRGGALLVRH----GWATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSAALKA 119 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF D +L +L+ A + Y V+TP+R A ++ L D + L Sbjct: 120 DGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGSGVLAATP 179 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLS 246 +P F D + ++ Y +QRD PA++G S LS Sbjct: 180 AADGVPPLAKIGFSGTDLRRLGIVPGMRGGRQLLADFLGRIGRYRQQRDFPAVKGVSYLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--G 304 +L G +S R K + GA +WL+EL+WR+FY ++ +P V Sbjct: 240 VHLRFGTVSVRDLV--AKAIAAGAFREGGEGAATWLSELVWRDFYFMILDRFPHVVERAF 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KP + AW G TG+P++DAAMRQLN+ G+MHNRLRM+ ASFL KD Sbjct: 298 KPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVASFLTKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+GE YF QL D DL++NNGGWQWAASTG D+ PYFRIFNP Q +RFDP G F Sbjct: 358 LGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERFDPAGKF 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR +LPEL NVP ++IHAP + P P+VDH +A TL +Y K Sbjct: 418 IRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLERYAIVK 477 >gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195] gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678] Length = 499 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 193/482 (40%), Positives = 274/482 (56%), Gaps = 14/482 (2%) Query: 10 HLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+ DN+AL AAC + + A++IATP QW++H ++ Q FI + Sbjct: 22 ALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHIN 81 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F+ Q F D ++ YC QQ ++++F E+ + + Sbjct: 82 LLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFA---GSEPEINEQQRDQAC 138 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +Q + ++ LL PG++LN + MYKV+TPF + + + A LP+P G Sbjct: 139 IQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE--IAARHAILPLPVPAPLG 196 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV P F+ + ++ GE A IL F ++KV Y + RD PAI GTS +S Sbjct: 197 PVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSIS 256 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+IGV+SPRQC L +F ++++ S A +WLNEL WREFYRHL+ +P + Sbjct: 257 PYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNYN 316 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K LL Sbjct: 317 FNRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLL 376 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE F +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+FIR Sbjct: 377 IDWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIR 436 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LPEL + + +H P + + YP IV+H A L KK Sbjct: 437 KYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKA 496 Query: 481 SL 482 + Sbjct: 497 AA 498 >gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 481 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 193/487 (39%), Positives = 281/487 (57%), Gaps = 24/487 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W+R DLRI DN AL +A N + IAVFI+TP+QW+QH ++ ++ FIY L Sbjct: 1 MS-DILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLK 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q + L++ GI + + ++F+D L + C Q T ++ N + E V + Sbjct: 58 QFESQLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPE---VDEQLRDKHL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180 + + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P Sbjct: 115 IASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTPVHSTGS 174 Query: 181 ------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + + +P+ + ++ F KV Sbjct: 175 AQAGSSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVN 234 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y RDIP+++GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR Sbjct: 235 DYSRLRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWR 294 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +FY+HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GW Sbjct: 295 DFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGW 354 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRI Sbjct: 355 MHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRI 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 415 FNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEARL 474 Query: 469 HTLNQYY 475 L + Sbjct: 475 RALAFFK 481 >gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01] Length = 471 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 199/474 (41%), Positives = 275/474 (58%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F++TPEQW++H ++ Q+ I L+ + + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVAGFVSTPEQWQEHNMAPMQADLIARRLVHLNE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Y + F + E + + L + N YE+NE D+ + L Sbjct: 62 ELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLAKS 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 + ++F D + P ++LN + +KV+TPF++A + +P + Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPEPQAEIPQEAIQ 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + +H LR+F +E+ Y E+RD+P++ GTSQL Sbjct: 182 PLEADRYHADVPFTYPRESSDQWYVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--HTDLTDGKATWLSEIIWREFYQHLLVFEPKLVKGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FIPW +KIEW+ D + WK G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD GTF+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R+W+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 420 RYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814] Length = 475 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 146/484 (30%), Positives = 238/484 (49%), Gaps = 26/484 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L W R DLR++DN AL +A SD IA+FI ++ + + +++ SL+++ Sbjct: 1 MNLCWFRQDLRLSDNPALRSAL--SDNSAIALFILEETDTQRP-MGSACKAWLHESLIRL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L G+ + D+ + + ++ +++NR+Y+ +V D+ L + L+ Sbjct: 58 QSDLEAIGVPLVLRR----GDARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113 Query: 129 HRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185 + + P A YKV++PF KA ++ V A ++P Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPTKIQSKPQ 173 Query: 186 ------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + ++ ++ GE A ++F + + Y + RD+P+ Sbjct: 174 LDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPSK 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS LSP+L G +SP Q W+ + + + +L E+ WRE + H + FY Sbjct: 234 NHTSCLSPHLRFGEISPLQIWHGVHAH---SGGEVDKDGYKFLAEVGWRE-FSHSILFYA 289 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + W +D + L AW+ G TG+P++DA MR+L G++HNR+RM+ AS Sbjct: 290 DNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVAS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL+K L +DWR GE +F L+D A+N WQW A +G D+ P+FRIFNP +Q ++FD Sbjct: 350 FLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G++IR W+PEL N+ + IH P L NYP PIVDHK A L Sbjct: 410 PKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALAA 469 Query: 474 YYAA 477 Y Sbjct: 470 YKDM 473 >gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium Broad-1] Length = 446 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 229/476 (48%), Gaps = 32/476 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA ++ +V+ +F+ P S R+ + ASL Sbjct: 1 MTTSLMWFRRDLRLGDHPALQAAA--AEGQVVPLFVLDPRLAG----SGRRWERLLASLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ + Q D E + + +++ + + RRD +E+R Sbjct: 55 ALRE---ETDGALVIRQ----GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I + PG + N + Y+V+TPF +A ++ +A Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAP------------ 155 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + GE+ ALH FC E + Y E RD P + TS+L Sbjct: 156 AGDPEVEWMTKLESDPLPSHSDQEAGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G + PR L + ++ EL WREFY ++ P + Sbjct: 216 SVALKYGEIHPRTLLADLGTHGTGASGE---DVERFVAELAWREFYADVLWHDPGSA-WR 271 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + D LL+AWK G TG+P +DA MRQL GWMHNR+RM+ ASFLVKDL Sbjct: 272 DLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 331 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W +G +FM LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP QG RFDPQG ++ Sbjct: 332 HMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQGDYV 391 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W+PEL ++P H P + L+ YP P+VDH + L++ K+ + Sbjct: 392 RRWVPELRHLPGAAAHEPWRHSE--GLAHGYPEPVVDHAEERREALDRLAELKEST 445 >gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892] Length = 589 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 248/486 (51%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I ++I +PE H S + I +L+ Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C LF N +YE++E+RR+ L + Sbjct: 160 LKSELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 + I +D + PG + + Y VY+P+ ++ + L Q Sbjct: 220 ATQGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + N + + + M+P GEQ A LR+F +K Y Sbjct: 280 GNARKHFKNLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHA 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R ++ + L G +W++E+ WR+FY+ Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 400 HVLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 TRMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR+W+PEL +V IH P+ N YP PIV+H ++ L Sbjct: 520 RQSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERAL 579 Query: 472 NQYYAA 477 +Y A Sbjct: 580 EKYKKA 585 >gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550] Length = 476 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPTS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKSMKE 474 >gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 478 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 204/467 (43%), Positives = 268/467 (57%), Gaps = 10/467 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R DLR+ DN AL+ A N + IA + +QW +H +S RQ I L + +S Sbjct: 7 VWFRRDLRVHDNPALFHAMKN--GQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLEDLTQS 64 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L+ G+ ++F + S Q V +LF N +YE+NEV K + + LQ + Sbjct: 65 LAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEALQQQD 124 Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I C + D L+ PG I+N Q YKV+T F+KA + L P+P + V Sbjct: 125 IKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPKKQQAPKVKT 184 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + EQ AL L +FCK+++ Y RDIP++ GTS LSPYL+ Sbjct: 185 DISALQSIAQVDIDP--WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTSTLSPYLA 242 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 IG LS RQCW ++ G +W +ELIWR+FYRHL+ F+P VC K F Sbjct: 243 IGSLSVRQCWQMSQQVSPSGSKPE--GIATWQSELIWRDFYRHLIYFFPHVCQYKAFKQE 300 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T+ + W KD L QAW G TG+P++DAAMRQLN GWMHNRLRM+ A FL K L +DWR Sbjct: 301 TDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLFIDWR 360 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP Q +RFD +GTF+R ++P Sbjct: 361 LGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLRQYVP 420 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 EL ++ + IH P K L YP PIVDHK+A T + Sbjct: 421 ELASLDDKRIHNPDPITVK---KLGYPAPIVDHKQAVVQTKQWFKEL 464 >gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968] gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella longbeachae NSW150] Length = 472 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 161/481 (33%), Positives = 248/481 (51%), Gaps = 15/481 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ DN A AC + VI ++I + + Q+ ++Y SL Sbjct: 1 MTTALVWFRFDLRLNDNPAFIEACSHHQF-VIPLYIYDE---KNSVLGGAQAWWLYHSLT 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL+Q+G+ + D +E + ++ +++NR YE + RDK ++ Sbjct: 57 SLSNSLAQRGLNLILRK----GDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183 L R I + L P +I N + +KV+TP+ K Q N+ + + Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + GE A L++F + + Y RD P TS Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDFPIKNATS 232 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP ++ ++ + A +L+EL WREF +L+ +P Sbjct: 233 RLSPHLHFGEISPWTILRAIELAKLN-PNCDLASAEHFLSELGWREFSVYLLYHFP-KLP 290 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F + W+ D LL W++G TG+PIIDA MR+L G+MHNR+RMI ASFL K Sbjct: 291 SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAASFLTK 350 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR+G ++F+ L+D DLA+N+ WQW A G D+ PYFRIFNP +Q ++FD G+ Sbjct: 351 GLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDADGS 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IRHW+PEL+ + +Q IHAP ++ L+ YP PI+DH +A LN Y K+ Sbjct: 411 YIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQLKRND 470 Query: 482 L 482 L Sbjct: 471 L 471 >gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688] Length = 481 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 165/490 (33%), Positives = 242/490 (49%), Gaps = 26/490 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62 M+ LVW R DLR D+ ALY A V F+ + + R+ FI+ Sbjct: 1 MTTSSYALVWFRRDLRDFDHAALYHALKAH-THVYCAFVFDTDILDALPDRADRRVEFIW 59 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++Q++L +G + E + + ++ + + ++ NR YE + V RD Sbjct: 60 ESVRELQQALRSQGGDLIMLHAC----AKEGIPALAVKLKASAVYSNRDYEPDAVARDAE 115 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLP 178 + +L I + D V+ +L A + Y V+TP++ A ++ L Sbjct: 116 VAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDR 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 T + + M + L +E++ Y + RD PA Sbjct: 176 YRQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEFQERMARYKDARDFPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R ++ GA +WLNELIWR+FY ++ + Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQHNA-------GAETWLNELIWRDFYFQVLHHH 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V G+ F + I + L AW +G TG+P++DAAMRQLN G+MHNRLRM+TA Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDLL+DWR GE YF +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP Q ++F Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D QG FIR ++PEL + IHAP + +YP P+V+H L Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALA 468 Query: 473 QYYAAKKQSL 482 Y A +L Sbjct: 469 LYKNASSTAL 478 >gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU] gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter baumannii 1656-2] gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TCDC-AB0715] gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059] Length = 480 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 193/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQADLR 175 L H F D + P SI N + Q Y+V++ F+KA + + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F +E V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440] gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440] Length = 480 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 190/476 (39%), Positives = 268/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I S D + PG++L + ++V++ F+K +++L ++ + Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ F A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D + +Y PIVD + L + ++ Sbjct: 419 IRHWVPELQELDEKAIHQPIKSTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLPRR 473 >gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241] Length = 476 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 248/490 (50%), Gaps = 27/490 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ M + D R+ DN AL+ A + + V+ V++ I + + Sbjct: 1 MQNKIIMM-----FQKDFRLYDNPALFEAAQSGE--VVPVYVQDETF----SIGSAAKWW 49 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +++ VQK L G F + + E + S Q +T +++N YE + ++ + Sbjct: 50 LHHAIIDVQKQLKALGATFIIRK----GKTQEEILSLIEQLDITAVYWNICYEPDRLQSN 105 Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++ L+ + +ICK F+ +LL P I YKV+TPF A + + + Sbjct: 106 QKMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQAIPKPTSKVQS 165 Query: 180 PAIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + ++ ++ E+ A +KF K+ +Y E RD Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDF 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLM 295 P S L+PYLS G +S + ++ L + + + S++ +LIWREF +L+ Sbjct: 226 PNQNVHSMLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 YP + KP E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK LL+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FD G +IR W+PEL ++P +YIH P + L YPLP+VDHK A Sbjct: 405 EKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARER 464 Query: 470 TLNQYYAAKK 479 L Y + K+ Sbjct: 465 ALCAYKSMKE 474 >gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 471 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 202/474 (42%), Positives = 278/474 (58%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA +S V+A F+ATPEQW++H ++ Q+ I L +++ Sbjct: 3 LVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHLEE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ + Y + F D E + + L V + N YE+NE D+ + + L + Sbjct: 62 ELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLANS 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 + ++F D + P ++LN + +KV+TPF++A + + L Sbjct: 122 EVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAELSKEVLQ 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + LR+F +E+ Y +RD+PA+ GTSQL Sbjct: 182 AVEADRYHADVPFSYPRESSERWHASTTDIVQQLREFARERSDAYQAERDLPAVDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E L G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--LPDLTEGKATWLSEIIWREFYQHLLVFEPKLVRGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FIPW EKI+W+ D + WK G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL KDL Sbjct: 300 GFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD GTF+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 420 RHWVPEIKEVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1] Length = 480 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 191/478 (39%), Positives = 274/478 (57%), Gaps = 8/478 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ + IA+++ +P QW+ H + + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GQTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I S+ D + PG++L + ++V++ F+K +++L ++ + Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ F A+ +P GE A L +F + + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + +G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGQF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA-AKKQS 481 IRHW+PEL + + IH P D + +Y PIVD + L + A++Q+ Sbjct: 419 IRHWVPELQELDEKAIHQPIKPTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLARRQN 475 >gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 464 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 195/471 (41%), Positives = 271/471 (57%), Gaps = 10/471 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W R DLR+ N+AL A +N A+F +QW+QH + Q + + Sbjct: 1 MNT-LFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L+ GI +F D L S+C + + N +YE+NEV RDK + + Sbjct: 58 YLQEQLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQ 117 Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 R I + + + P GSI N + +MYKV+TPF++A ++ P + Sbjct: 118 CDKRSITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQNP 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + S +P+ ++ L ++ F +K+ Y +QRDIP+I+GTS L Sbjct: 178 IKIEKSQHLES-----DGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G++SP+Q +++ + D+L KS F+W+NELIWREFYRHL+A YP + G+ Sbjct: 233 SPYLALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGE 292 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F +EW K AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K L Sbjct: 293 NFNEKYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHL 352 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP G FI Sbjct: 353 LIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFI 412 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 R +LPEL NVP ++IH PH++L Y IVDHK A L + Sbjct: 413 RKYLPELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAFK 463 >gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 476 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNLALFEAVQSGE--VLPVYIQDETF----SIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii 37] Length = 453 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 198/471 (42%), Positives = 269/471 (57%), Gaps = 19/471 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HLVW RNDLR +DN ALY AC V ++ TP QW+ H ++ Q+ FI +L + Sbjct: 1 MHLVWFRNDLRTSDNSALYYACL--KGPVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI + ++F L + + N + EINE RD+ ++K Sbjct: 59 AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKA-- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +L GS+L MYKV+T FR A ++ + Q DL LP PA ++ Sbjct: 117 -GLPLVLYQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +Y + +P GE AL LR F + + Y RDIP++ GTS LS Y Sbjct: 176 VSWSKNISVNYDKK-SSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLSAY 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L GV+S ++C + F D L S FSW+NE++WREFYRHLM F P +C GK F Sbjct: 235 LKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFN 294 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + I W+ + +AW +G TG+ ++DAAMRQLN GWMHNRLRM+TASFL K LL+D Sbjct: 295 KLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLLID 354 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR + Sbjct: 355 WRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIRKY 414 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + ELN + IH P + IV+HK+A + L++Y KK Sbjct: 415 VKELNGFDNKKIHFPVNA-------------IVEHKQARLNALDRYSVLKK 452 >gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407] gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar chinensis CT-43] Length = 476 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V+I Q I + +++ +++ V+K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + + Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYR 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL +P +YIH P + L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056] gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059] Length = 480 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 191/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK LS I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQADLR 175 L H F D + P SI N + Q Y+V++ F+KA + + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F ++ V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116] Length = 471 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 202/474 (42%), Positives = 277/474 (58%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F++TPEQW++H ++ Q+ I L+ + + Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQ-PVVAAFVSTPEQWQEHNMAPMQADLIARRLVHLDE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Y + F D + + L + N YE+NE D+ + L Sbjct: 62 ELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLAKS 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++F D + P ++LN + +KV+TPF++A + + A L Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAEILQEATQ 181 Query: 190 PSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P R+ + + + + +H LR+F +E+ Y E+RD+P++ GTSQL Sbjct: 182 PLEADRYHADVPFTYPRESSEQWFVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + GK Sbjct: 242 SPYLAIGALSPRQCIARLYAENP--HTDLTDGKATWLSEIIWREFYQHLLVFEPKLVKGK 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FIPW +KIEW+ D + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL KDL Sbjct: 300 GFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD G F+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGAFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R+W+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 420 RYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae] Length = 624 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 245/486 (50%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I D+ ++PPG + + + Y VY+P+ ++ L+ Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312 Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 F D + ++P GE L L F +EK Y + Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF+P Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 552 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR W+PEL + IH P+ + N YP PIVDH L Sbjct: 553 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 612 Query: 472 NQYYAA 477 ++Y A Sbjct: 613 DRYKKA 618 >gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12] Length = 477 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 256/480 (53%), Gaps = 19/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR DN+AL AC++ +I ++I Q + A Q +++ SLL Sbjct: 1 MSTAIVWFRQDLRCNDNQALAEACNHHQY-IIPLYIY-----SQESLGAAQHWWLHHSLL 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +QK L ++G+ Q ++ + ++ +++NR YE ++RDK ++ Sbjct: 55 ALQKELKKQGLDLCLKQ----GQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI 182 L+ + + + L P ++ N +KV+TP+ K I+ Q+ + P P Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPPPLT 170 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ + + GE A++ L F + + Y E R+ P+ T Sbjct: 171 STSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKTAT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+L+P+L G +SP Q WN ++E + A +L EL WREF +L+ +P + Sbjct: 231 SRLAPHLHFGEISPWQVWNAIEEAKLQPK-CDLRSADHFLAELGWREFSYYLLYHFPELP 289 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F + W +D L+ W+ G TGFPI+DA MR+L G+MHNR+RMI ASFL+ Sbjct: 290 -NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRMIVASFLI 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL++DWR G +F + LLD DLA+N+ WQW A TG DS PYFRIFNPT+Q ++FDPQG Sbjct: 349 KDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQSEKFDPQG 408 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +I+ W+PEL+ VP Q+IH P + L +YP P+VDH L Y + +K Sbjct: 409 EYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIALQHYQSLRK 468 >gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Length = 493 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 162/487 (33%), Positives = 236/487 (48%), Gaps = 25/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL+ A S +V VFI + R+ FI+ASLL++ + Sbjct: 8 LVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELAQ 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + + ++ V +F N YE + RD + LQ Sbjct: 67 ALRALGGGLIVQHAW----AETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQAA 122 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181 +F D V+ +L A + + V+TP++ A ++ L + P Sbjct: 123 GRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYADR 182 Query: 182 -IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + L P + + + L +++ Y + RD PA++ Sbjct: 183 FVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFADRMQRYDQTRDFPALK 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS ++ G +S R R + GA WL+EL+WR+FY ++ +P Sbjct: 243 GPSYLSVHVRFGTVSIRALARRALDAMRTGTGGN--GAAVWLSELVWRDFYFMILFQHPH 300 Query: 301 VCMGKPFIPWT--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 V + + L QAW G TG+P++DAAM QLN G+MHNRLRM+TA Sbjct: 301 VVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRMVTA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Q ++F Sbjct: 361 SFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQSEKF 420 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D QG FIR +LP+L + ++IHAP ++ NYP P+V H +A TL Sbjct: 421 DQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEARARTLQ 480 Query: 473 QYYAAKK 479 +Y KK Sbjct: 481 RYAVVKK 487 >gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684] Length = 476 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 153/483 (31%), Positives = 217/483 (44%), Gaps = 27/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D+ L A A+V+ VF+ P R S ++ F+ L + Sbjct: 4 STAIVWFRRDLRLHDHPPLVRALAAH-ARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L ++G + L + + + + + RD+ + L Sbjct: 63 LDADLRERGSGLVVRE----GRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSAL 118 Query: 128 QHRVICKSFDD---SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + G A Y V+TPF +A Q + R+ V Sbjct: 119 AAAQPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLP 178 Query: 185 TGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 G PS GE+ A ++ + Y D A G Sbjct: 179 AGLRRGALPSLAALGLTDELSPTARAVEPGERAARRAAERWLDGHLGDYARDHDRLAG-G 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSPYL G LS R+C R + GA +++ +L WR+FY H++ +P Sbjct: 238 TSALSPYLHHGCLSARECEQRAVRRGGE-------GAEAFVRQLAWRDFYAHVLLHHPED 290 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W +D LL AW+ G TGFP++DA MRQL GWMHNR R++T SFL Sbjct: 291 VRREH-QERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGSFL 349 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420 KDL +DWR GE +FM LLDGD+ASNNG WQW AS G D P F RI NP +Q +R DP Sbjct: 350 TKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRRHDP 409 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474 G ++R W+PEL VP + P ++ + +YP PIVDH L +Y Sbjct: 410 DGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDHAHERRRALERY 469 Query: 475 YAA 477 AA Sbjct: 470 RAA 472 >gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus B4264] gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264] Length = 476 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTA-YK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y K+ Sbjct: 415 RRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474 >gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900] Length = 480 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 194/484 (40%), Positives = 272/484 (56%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK L+ I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175 L H F D + P SI N + Q Y+V++ F+KA L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F +E V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQGTS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF T+KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K DL LNYP PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIKT 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus AH1134] Length = 476 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVSK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E W+K+ LL W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL+++P +YIH P L YP PIVDHK A L Y + K+ Sbjct: 415 RRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSMKE 474 >gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1] gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1] Length = 475 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 192/476 (40%), Positives = 270/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL A+ IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL + I +D + + + C Q +V + +N +Y INE RRD L+ Sbjct: 59 RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I S+ D + PG++L + ++V++ F+K +++L ++ + Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ F A+ +P GE A L +F E + Y RD+PA GTSQ Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ GV+SPRQC + G +W+NEL+WREFY+H+++ YP V Sbjct: 239 LSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AW+QG TGFPIIDAAMRQL GWMHNRLRMI A FL K+ Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHW+PEL + + IH P D + +Y PIVD + L + ++ Sbjct: 419 IRHWVPELQALDEKAIHQPIKSTDLFG-NTSYLSPIVDLSSSRQRALEAFKGLPRR 473 >gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058] gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB307-0294] Length = 480 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 192/484 (39%), Positives = 270/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK LS I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175 L H F D + P SI N + Q Y+V++ F+KA L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F ++ V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + Sbjct: 419 QSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 166/491 (33%), Positives = 240/491 (48%), Gaps = 26/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ D AL+ A S V VFI + + R+ F++ASL ++ Sbjct: 14 SLIWFRRDLRVFDQAALHHALRQS-RTVFCVFIFDSDILQHLPEQDRRIEFLHASLTELH 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + G ++E + + + V +F N YE + RD + LQ Sbjct: 73 EELVKLGGALIVRHA----RAVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQ 128 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I S D V+ +L+ A + + V+TP++ A ++ L Sbjct: 129 HDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLAD 188 Query: 189 TPSNIPRFFDYP--------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P P + + L E++ Y + RD PAI+ Sbjct: 189 RFAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFMERIDKYKQTRDFPAIK 248 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S LS +L G +S R R E GA +WL EL+WR+FY ++ +P Sbjct: 249 GPSYLSVHLRFGTVSIRHLARRACEAARIAADAS--GANTWLAELVWRDFYFMILQHHPR 306 Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V G F P + I+W QAW G TG+P++DAAM Q+N G+MHNRLRM+T Sbjct: 307 VVHG-AFKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVT 365 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL+KDL +DWR GE YF +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP Q ++ Sbjct: 366 ACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEK 425 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471 FD G FIR +LP+L + + IHAP +L +NYPLP+V H A TL Sbjct: 426 FDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQTL 485 Query: 472 NQYYAAKKQSL 482 +Y KK ++ Sbjct: 486 ARYAVVKKVAV 496 >gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4] gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4] Length = 486 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 159/494 (32%), Positives = 245/494 (49%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQS 58 M A +VW R DLR+ DN ALY A + VI VFI I A Sbjct: 1 MSNRVAFMTSIVWFRQDLRVADNAALYHAAQ--EGPVIPVFIWDDAAPLTNSQAIGAAGK 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ SL +++ L + D L L+ + + +NR Y+ + Sbjct: 59 WWLHHSLTALREQL----GDLVVLR----GDPATVLQELALETKAEAVRWNRAYDEYGIE 110 Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RDK ++ L+ + KSF +VL P I + YKVY+ + +A+ V A L Sbjct: 111 RDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAAPLPVP 170 Query: 178 PVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + ++ + ++ + + ++ GEQ A L F + + Y E R Sbjct: 171 DKIELAVGWVSLGIEALDLLPRDPNWAEGWENVWTPGEQGARERLCVFLDQGLNGYGELR 230 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P + S+LSP+L G +SP Q W + D+ + + A +L+E++WREF HL Sbjct: 231 NRPDLPNVSRLSPHLRFGEISPTQIWATTQMH-ADVHPEHATDADKFLSEIVWREFSYHL 289 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + + W +++ L+AW++G TG+PI+DA MR+L G+MHNR+R Sbjct: 290 LFHFPDLPEKNW-KVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRVR 348 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVK L + W+ GE +F LLD D+A+N+ WQW + TG D+ PYFRIFNP Q Sbjct: 349 MIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYTQ 408 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDP G +IR W+PEL ++ + AP L YPLP+VDH+ A Sbjct: 409 AQKFDPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTARK 468 Query: 469 HTLNQYYAAKKQSL 482 L+ Y A K ++ Sbjct: 469 KALDGYEAVKAENA 482 >gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 500 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 235/487 (48%), Gaps = 26/487 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S L+W R DLR DN AL+ A + + +V VF+ + R+ FI+ S + Sbjct: 21 SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNKADRRVEFIWESCM 79 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G +D + + + V +F N+ YE + RD + K Sbjct: 80 ALKTKLQGFGGDLHL----MYDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRDITVGKT 135 Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----A 181 LQ + I + +L A + + V+TPF+ A ++ L L P + Sbjct: 136 LQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPSEARVGS 195 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +T ++ +D + P E + Y RD PAI+G Sbjct: 196 LAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFLNRMDKYKV--ARDFPAIKG 253 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS + G +S R+ K + GA WLNELIWR+FY ++ P Sbjct: 254 VSYLSVHNRFGTISIRRL---AKAAYDRFKFDGSEGAMGWLNELIWRDFYFQIIYHRPDA 310 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K F P ++I+W+ D + AW +G TG+P++DAA RQLN G+ HNRLRM+TA Sbjct: 311 AE-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNRLRMVTA 369 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL +DWR GE+YF L D DL++NNGGWQWAAS+G D+ PYFRIFNP Q ++F Sbjct: 370 SFLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPYSQSEKF 429 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 D G FIR + PEL + +YIH P L YP P+V+H A TL Sbjct: 430 DADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVARKKTLE 489 Query: 473 QYYAAKK 479 +Y KK Sbjct: 490 RYSVVKK 496 >gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H] Length = 479 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 146/482 (30%), Positives = 227/482 (47%), Gaps = 25/482 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR+ D+ AL+ A S +I ++I H + A ++ +L ++ Sbjct: 9 AIVWFRDDLRMADHPALHEAA-ASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLR 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L ++G + + L Q + ++ + E +D + + L+ Sbjct: 68 RNLEKQGGTLLTLS----GSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEE 123 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-------SLPVPA 181 + + +VL+ P ++ YKV F KAL + V L + Sbjct: 124 QECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEAPSRLSFHAIPAS 183 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + ++ + GE L F K V Y RD A +G Sbjct: 184 VLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAEEG 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSPYL+ G +SPRQ W L++ G +L+EL WREF R+ + P + Sbjct: 244 TSRLSPYLASGAVSPRQVWAALQKHGA-----HTDGPRIFLSELGWREFARYTLYHLPKL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P + W + + L+AW++G TG PI+DA MRQL GWMHNR RMI SFL Sbjct: 299 PFEN-LSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGSFL 357 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LL+DW+ G+ +F L+D D A+N WQW A TG ++ P+FRIFNPT Q ++FDP Sbjct: 358 TKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFDPN 417 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 G +IR W+PEL + + + P + D+ L +YP PIVD K+ L + Sbjct: 418 GDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRALQAFR 477 Query: 476 AA 477 + Sbjct: 478 SL 479 >gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 476 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 248/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ ++I I + +++ +++ ++K Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPIYIQDETF----SIGSAAKWWLHHAIIDIKK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPTSKVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A + +KF K+ +Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G + + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+VDHK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474 >gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O] Length = 469 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 275/473 (58%), Gaps = 10/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVWLR DLR DN AL A S +V+A F+ATP QWR H ++ Q+ I L + Sbjct: 1 MKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ I Y + ++ S + ++ Q V+++ +NR+YE+NE RD+ L +L Sbjct: 60 AEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLA 119 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLT 185 + +D + PG +LN +KV+TPF+KA +++ V + P + Sbjct: 120 SSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVLPE 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + Q LR FC E+V Y EQRD PA GTS L Sbjct: 180 ALQPSLWHEQAPFSYPRESSEAWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTSVL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG +S RQC RL +G WL+ELIWREFY HL+ F P + G+ Sbjct: 240 SPYLAIGAISVRQCIARL----YWQQSYLSNGREVWLSELIWREFYHHLIHFEPKLVKGQ 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W + + W + W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 296 GFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G F+ Sbjct: 356 HVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFV 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +HWLPEL VP++++H P +W L +YP P+VDHK+ TL+ Y AK Sbjct: 416 KHWLPELAQVPSKFVHQPWNWPGHMQL--DYPAPMVDHKQEREITLSLYTQAK 466 >gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876] Length = 476 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + +++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLHHAIIDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLEALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YPLP+V+HK A L Y + K+ Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKSMKE 474 >gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5] Length = 487 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 145/482 (30%), Positives = 211/482 (43%), Gaps = 21/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQV 68 +VW RNDLR++D+ A AA + A +I +FI Q + + A ++ SL + Sbjct: 12 IVWFRNDLRLSDHAA-LAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLANSLRTL 70 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L ++G + D+ L + + +F+ E + + L Sbjct: 71 DRELRKRGQRLILRR----GDTATILVQIAQEAKAKAVFWLDSEIPAEAACARQVITALH 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT--- 185 + S LL S++ + ++ L + + + Sbjct: 127 EIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALGDPPPPLPAMKKLPPSVAS 186 Query: 186 ---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + GE A L F + + Y RD A T Sbjct: 187 VESESIEDWQLEPLHPDWAGGLRARWKPGEAGARKKLDAFLDDAIDGYASGRDDLARDQT 246 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS +L G +SPRQ ++ +L+EL WREF RHL+ P Sbjct: 247 SHLSAHLRFGEISPRQVFH-ATRFAAAHNPALSHDVEKFLSELGWREFCRHLLFDQPD-L 304 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P + W D L AW+QG TG+PI+DA MR+L G MHNR+RM+ ASFLV Sbjct: 305 HRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAASFLV 364 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE +F L+D D SN G WQW A G D+ PYFRIFNP +QG++FDP G Sbjct: 365 KHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKFDPDG 424 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++ W+PEL +P + IH P L YP PIVDHK A L Y Sbjct: 425 AYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAARERALAAYRK 484 Query: 477 AK 478 + Sbjct: 485 MR 486 >gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter salexigens DSM 3043] Length = 473 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 190/470 (40%), Positives = 258/470 (54%), Gaps = 9/470 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R+DLR DN+AL AA VIAVF+ + QW++H A + F + +++ Sbjct: 7 VWFRSDLRTLDNRALSAAAER--GPVIAVFLTSIPQWQRHDHGANKIDFWLRGVAALREH 64 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 LS I + +D++ + L Q T L +NR+Y +NE RRD +E+ Sbjct: 65 LSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFHDAG 124 Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I + + PG +L + Y V+TPF KA + L L PA + + Sbjct: 125 IAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLAIEA 184 Query: 191 SNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P +P G++ A L +F + + +Y QRD PA+ GTS+LSP Sbjct: 185 DPAPSRELPDACDTPLDASRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGTSELSP 244 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL++G+LS RQC + + L +G +W NELIWREFY H+ A +P + +PF Sbjct: 245 YLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDISRHRPF 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P T + W D +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL K LL+ Sbjct: 305 QPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLSKHLLI 364 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE +FM L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G FI H Sbjct: 365 DWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEGRFIAH 424 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 WLPEL + + P + Y LPIVDHK A L+ + + Sbjct: 425 WLPELAPLAVKSRFFP---SEAQRRDTGYTLPIVDHKAARQRALDAFKSL 471 >gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2] gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185] Length = 476 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 245/480 (51%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V + D R+ DN AL+ A + + V+ V++ I + ++ +++ VQK Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDETF----SIGSAAKWWLRHAIMDVQK 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + ++ E + S Q +T +++N Y+ + ++ ++ ++ L+ + Sbjct: 60 QLKALGSTLIIRK----GNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +ICK F+ +LL P I YKV+TPF A + ++ + + + P + Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175 Query: 190 ---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ ++ E+ A +KF K+ Y E RD P S L+ Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYLS G +S + ++ L + + + S++ +LIWREF +L+ YP + K Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E WNK+ LL+ W++G TG+P IDA MR+L G+MHNR RM ASFLVK L Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+ W+ G ++FM LLD D+A+N GWQW A +G D+ PYFRIFNP QG++FD G +I Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414 Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL ++P +YIH P + L YP PIVDHK A L Y K+ Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474 >gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10] Length = 607 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 161/487 (33%), Positives = 242/487 (49%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN AL A + I + +I +P+ + H + + FI +L Sbjct: 114 VHWFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDI 173 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L++ I + + + + N +YE++E+RR+ + + Sbjct: 174 LKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRAC 233 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + IC + PG + + + Y VYTP+ K+ + + + A Sbjct: 234 VEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNP 293 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F+ + M+P GE A L KF EK+ Y + Sbjct: 294 SSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQD 353 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 R+ P++ TS LS + + G LS R ++ L G +W++E+ WR+FY Sbjct: 354 HRNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 413 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P IEW + QAW +G TG+PI+DAAMRQLN G+MHN Sbjct: 414 KHVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHN 473 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI SFL K LL+DWR+GE YFM L+DGD ASNNGGW + ASTG D PYFRIFNP Sbjct: 474 RSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 533 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469 +Q ++FD +G +IR W+ EL V + IH P+ + ++ YP IV+HK + Sbjct: 534 LLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDKEAAKIAKKSGYPERIVEHKVSRER 593 Query: 470 TLNQYYA 476 L +Y Sbjct: 594 CLKRYKE 600 >gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1] Length = 499 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 250/494 (50%), Gaps = 37/494 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57 LVWLR DLR TDN ALY A + + +V VF+ W R+ Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI A+L ++ ++L G + + + + + + +F N YE + Sbjct: 72 IEFILAALGELDEALRTDGGGLIVL----YGNPADLVPTLADELGADAVFANHDYEPVAI 127 Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + ++L +F D V+ +L + + V+TP+R A ++ L DL+ Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187 Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV PS + R P + P G A +L F Y Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMTRIDSY 247 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 ++RD PA +G S LS +L G +S R E L G+ +WL+ELIWR+ Sbjct: 248 A-DRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEL---SLQPDGQGSATWLSELIWRD 303 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + G F +++ W + AW G TG+P++DAAM QLN Sbjct: 304 FYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL VDWR+GE YF QL D D ++NNGGWQWAASTG D+ PYF Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 RIFNP Q ++FD +G FI+ +LP+L +P+++IHAP + L +YP PI Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLAECGVVLGKDYPAPI 483 Query: 461 VDHKKACHHTLNQY 474 VDH +A TL ++ Sbjct: 484 VDHAEARARTLARF 497 >gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC 33331] Length = 459 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 130/474 (27%), Positives = 208/474 (43%), Gaps = 18/474 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +SD +V+ +F+ P + + F+ L Sbjct: 1 MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + + E + + + RR++ L + Sbjct: 60 DLDSGLRDRGGRLVVRE----GEVAEEVRRIVSETEAGVVHMAAGISGYAQRREERLREA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L S D+V+ + + + LRS ++ Sbjct: 116 LSSVGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPYFRRWSGEGLRSPFGAPRKVRV 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245 P P + + + P G + L + E R D A TS+L Sbjct: 176 PEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDDMAGDATSRL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LSP + +R + GA +++ ++ WR+F+ ++A P+V Sbjct: 236 SPHLHFGTLSPTELVHRARA-------TGGPGAEAFVRQVCWRDFHHQVLATRPAVSRSD 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 AWK+G TG+P++DAAMRQL GWMHNR R++TASFL K L Sbjct: 289 YRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRLLTASFLAKTL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 VDWR G +F+ L+DGD+A+N WQW A TG DS P R+ NP Q KR+DP+G ++ Sbjct: 349 YVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRP-NRVLNPVTQAKRYDPEGAYV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R W+PEL +P +H P ++ +YP P+V L ++ A++ Sbjct: 408 RRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVVGLSDG----LARFKEARR 457 >gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM 271] Length = 477 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 155/495 (31%), Positives = 236/495 (47%), Gaps = 34/495 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + W R DLR+ DN AL+ A + V+ V+I + + + Sbjct: 1 MKRK----TVICWFRQDLRLEDNPALFVAAE--EGYVLPVYILDDSSPGTWQMGSATRCW 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL+ + +S K +F+ + +E L + Q + K+ +NR YE ++RD Sbjct: 55 LHHSLVSLNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRD 107 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI------QNLVQAD 173 + ++ LQ I S + L P +L Y+V+TPF + + + A Sbjct: 108 QGIKATLQAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAP 167 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 R L I + V N+ + Q I + +GE +A L +F + + Y E Sbjct: 168 QRMLMADTIDNSISVQDLNLLPSIPWDSQLIS-HWSVGENSARQSLLRFLDQGLNGYKEG 226 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P S+LSP L G LSP W K +L+EL WREF Sbjct: 227 RDFPGQNHVSRLSPALHFGELSPNTVWYEAKRCGSG------QDLDHFLSELGWREFAYT 280 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L+ + + W + L W+QG TG+P++DA MR+L G+MHNR+ Sbjct: 281 LLYHNHDMPEKN-LQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRV 339 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMIT SFLVK+LL+ W G+++F LLD DLA+N+ GWQW A G D+ PYFR+FNP Sbjct: 340 RMITGSFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVR 399 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 QG++FDP GT+ ++PEL +P +Y+ P L YP PIVD + Sbjct: 400 QGEKFDPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISR 459 Query: 468 HHTLNQYYAAKKQSL 482 + L+ Y + +K+ + Sbjct: 460 NRALSAYASIRKKKI 474 >gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3] Length = 459 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 230/473 (48%), Gaps = 20/473 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR+TDN+ L + + VF+ + + F+ +L + Sbjct: 1 MDLCWHRRDLRVTDNRML------AGRNALPVFVLDEAVLE--HAAPPRVAFMLDALESL 52 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++G + D + + + V + +N Y RD+ + L Sbjct: 53 REAYRERGGNLLIER----GDPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108 Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I V+ PGSI Y V+T F K + + + ++ P Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLDRDKPDPVSAPES----VSDP 164 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P IP D F+A + P G A + L FC + Y E RD P+ GTS+LS Sbjct: 165 DDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTSRLS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R+ + + + K + G + ++L WREFY ++ ++P+V Sbjct: 225 VDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVVTKN 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + +IEW D AW +G TG+PI+DA MRQL WMHNR+RM+ A+FL KDL Sbjct: 285 -YKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLTKDL 343 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G ++F L+D D ++ GGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 344 LVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 403 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL V + IHA H D+ + YP PIVDH + + A+ Sbjct: 404 REYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDHAIRREVAIETFERAR 456 >gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5] Length = 469 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 189/467 (40%), Positives = 264/467 (56%), Gaps = 6/467 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLRI+D +A A V+AVF QW++H ++A + F+ +L + Sbjct: 1 MNLVWLRNDLRISDQRA-LGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127 + L GI C +F E L +LF+N +Y R + Sbjct: 60 RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ + + D V++P G + + + Y+V+TPF+KA ++ +V+ P P + Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + + ++P GE A L+ F + Y RD PAI+GTS LSP Sbjct: 180 PFPGDGAALPTDIPHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIEGTSALSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ GVLS RQC + E GA WL+ELIWREF++H++ +P V + F Sbjct: 240 YLACGVLSIRQCVSAALELANGGSE----GARVWLSELIWREFFQHILRAFPRVSTNRAF 295 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 TE + W D AW +G TG+PI+DAAM QL++ GWMHNRLRMI A FL KDLL+ Sbjct: 296 QEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMFLTKDLLI 355 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YFM L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP G FIRH Sbjct: 356 DWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDPHGQFIRH 415 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +LP+L + +YIH PH +++YP P+VDHK A ++ + Sbjct: 416 FLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462 >gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter johnsonii SH046] Length = 475 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 177/479 (36%), Positives = 264/479 (55%), Gaps = 14/479 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W R DLRI D+ AL+ A + ++A+ I +P+QW H +A + L + Sbjct: 1 MNIIWFRQDLRIHDHAALWHASQH--GPMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL+Q I + D L S C +V K+F N + +NE++RD +++ L Sbjct: 59 KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + P SI N + + Y+V+ F+K + L + P+P+ + Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178 Query: 188 VTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + I +P E AL +L F KV Y ++RD P Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TSQLS YL++G++S RQC N L + +G +WL+EL+WREFY+H++ + Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V PF T++I W L AW+QG TG PI+DA MRQL GWMHNR+RMI A Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K+LL+DWR+GE++FM L DGDLA+NNGGWQW ASTG D+VPYFR+FNP Q ++F Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D G +IR WLPEL ++ + IH P++ + ++ L+YP PIVD K + + + Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSSRVRAIEAFKGL 475 >gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999] Length = 487 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 157/494 (31%), Positives = 236/494 (47%), Gaps = 28/494 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + ++W R+DLR+ DN ALY A + V+ +FI + +++ SL Sbjct: 4 PLVIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSL 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + S G Q Q D + ++S Q T + +NR YE ++ RD ++ Sbjct: 64 ASLSAS---TGQHLQLFQ----GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKA 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----------LIQNLVQADLR 175 L+ V S + +L P +L YKV+TP+ + Sbjct: 117 TLKDCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPWA 176 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + I + GEQ A L + +E Y E R+ Sbjct: 177 TRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRN 236 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +PA++GTS LSP+L G +S W +K+ F D A ++L+EL WREF +L+ Sbjct: 237 LPAVKGTSLLSPHLHFGEISVNTVWYAIKDAFKD--DPENEHADTYLSELGWREFSHYLL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F W L+AW+ G TG PI+DA MR+L G+MHNR+RM Sbjct: 295 FHFPH-IQTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I SFLVK+LL+DWR GE +F LLD D+A+N+ WQW A +G D+ PYFRIFNP +QG Sbjct: 354 IVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPILQG 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469 ++FD QG +++H+ PEL +P ++IH P L NYP PIVD K + Sbjct: 414 EKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSRQR 473 Query: 470 TLNQYYAAKKQSLL 483 L+ + K+ + + Sbjct: 474 ALDAFAVTKEANSI 487 >gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] Length = 525 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 170/491 (34%), Positives = 242/491 (49%), Gaps = 28/491 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR TD+ AL+ A + +V VF+ + R+ FI ASL Sbjct: 36 GLVWFRRDLRSTDHAALHYALKHC-REVWCVFVFDRDILDPLLARGLKGDRRVDFIRASL 94 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L G D + + + + V +F N YE + V RD + Sbjct: 95 IELDATLRAAGGGLIVMN----DSAASAIPALARELGVQAVFANHDYEPDAVARDAAVRD 150 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + +F D V+ IL + + V+TP++ A ++ + DLR P+ Sbjct: 151 SLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEPYLH 210 Query: 185 TGPVTPSNIPRFF-------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 PS P + P G L + ++ Y +RD P Sbjct: 211 ALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQA-LFEEFTSRMGDYGRRRDYP 269 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++G S LS +L G +S R + GA +WL+EL+WR+FY ++ Sbjct: 270 ALRGPSYLSVHLRFGTVSIRTLARAAHGAVLRGGADSA-GAATWLSELVWRDFYFMILHH 328 Query: 298 YPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P V G+ F P + I W ++W+ TG+P++DAAM Q+ G+MHNRLR Sbjct: 329 HPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLR 388 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+TASFLVKDL VDWR GE YF QL D D A+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 389 MVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQ 448 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 ++FDPQG FIR +LP+L +P +Y+HAP + L NYP P+V H A Sbjct: 449 SEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARK 508 Query: 469 HTLNQYYAAKK 479 TL +Y K+ Sbjct: 509 ETLERYAVVKE 519 >gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As] Length = 497 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 161/488 (32%), Positives = 236/488 (48%), Gaps = 27/488 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYA 63 + LVWLR DLR+ DN AL+AA D KV F+ + Q G+ + R+ FI A Sbjct: 18 PLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRVEFILA 76 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ ++ +L + G S + E + + + +F R E + RD + Sbjct: 77 AVAEIDAALREHGAALIVRHAS----AREAIPALAAELGAQTVFCGRDDEPEALARDAAV 132 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179 E+ L+ ++ + ++ +L + Y V+TP+R A + + + Sbjct: 133 ERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQPVDSAVT 192 Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A P + + + + L ++ Y + RD Sbjct: 193 SARLAALPAALRQPLPTLSELGFAPSNLHALKLPLGASGAAALVDDFSRRIDDYDQARDY 252 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +G S LS +L G +S R+ GA WL+EL+WR+FY ++ Sbjct: 253 PARKGPSYLSVHLRFGTVSVRELVAMAWARQQAGSE----GARVWLSELVWRDFYFQILF 308 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V + F P ++I+W D AW +G TG+P++DAAMRQ+N G+MHNRLRM+ Sbjct: 309 HHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMV 367 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YF L D DLA+NNGGWQWAAS+G D+ PYFRIFNP Q + Sbjct: 368 VASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSE 427 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 +FD G FIR ++PEL ++ IHAP L YP+PIV H A T Sbjct: 428 KFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRHDLARAET 487 Query: 471 LNQYYAAK 478 L +Y K Sbjct: 488 LERYAVVK 495 >gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16] Length = 465 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 212/465 (45%), Positives = 289/465 (62%), Gaps = 12/465 (2%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R DN AL AA + + VIA F+ATP+ WR+H ++ Q+ I L++++ LS+ I Sbjct: 2 RTIDNTALNAAIESGE-PVIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNIP 60 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFD 137 Y + ++ S++ + S+ Q VT + N++YE+NEV RD E +L + +D Sbjct: 61 LIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRYD 120 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----RLTGPVTPSNI 193 D PGS++N +KV+TP+++A +Q L Q ++ V R P Sbjct: 121 DKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQH 180 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 F YP + D ++P+ L +LR F E+ Y RD P+I+GTS+LS YL+IG Sbjct: 181 DMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIGA 239 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 LS RQC RL + ++ G +WL+ELIWREFY+HL+ F P + G+ F+PW Sbjct: 240 LSVRQCMARLL---YEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGRH 296 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + W D +QAWK+G TG+PI+DAAMRQLN GWMHNRLRMI ASFL+KDL VDWRIGE Sbjct: 297 LTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIGE 356 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +YFMS+L+DG+ ++NNGGWQW ASTG D PYFRIFNPT QG+RFDP+G F+RHW+PEL Sbjct: 357 DYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPELK 416 Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 NVP +YIH P W + ++YP PIVDHK TL Y AK Sbjct: 417 NVPDKYIHQPSKWANAK--GVSYPSPIVDHKAQREITLANYKNAK 459 >gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 477 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 189/482 (39%), Positives = 261/482 (54%), Gaps = 14/482 (2%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61 T+M+ L+W R DLR+ DN AL AAC ++ V AV+ TP QW QH ++ Q FI Sbjct: 2 TSMN-SLMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + + ++L+ GI +FD+ L +Y Q + ++ + E + + Sbjct: 61 QRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPE---INERR 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + V D +L G + N A MYKV++PF K Q + + VPA Sbjct: 118 RDRALIDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPA 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 TP+ + ++ +P GE A IL +F +V Y +RD PA++G Sbjct: 178 PIAAVLATPNEV---VFNCYKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L+IGV+S RQC + + L++ A +WLNELIWREFYRHL+ +P + Sbjct: 235 TSRLSPFLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRL 294 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 M F + I W + AW G TG+PIIDAAMRQLN GWMHNRLRM+ ASFL Sbjct: 295 SMNHNFNELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFL 354 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LLVDWR GE YF +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP Q +FDP Sbjct: 355 TKHLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPD 414 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +FI+ ++ EL+ IH P + L YP PIV+HK A + A Sbjct: 415 ASFIKRYVSELSAWSLADIHQPKTINVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSAL 474 Query: 478 KK 479 K+ Sbjct: 475 KR 476 >gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales bacterium HTCC2083] gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 511 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 112/482 (23%), Positives = 189/482 (39%), Gaps = 27/482 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLR D+ L AA S++ VI ++I PE W+Q S R HFI+ L+ + Sbjct: 6 SIVWFKRDLRNHDHAPLLAASQ-SNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCLVDLN 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L+ G D + L Q V ++ + + + L +L Sbjct: 65 IALTDLGQPLIVR----VGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVGKLCL 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 S P ++ + +N+ +P + Sbjct: 121 DR----NISSHEFPTNGVVRRLRSRDDWSKIRNVRMAENITAKPNNLVPTLGCQSDSLPE 176 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSP 247 + + I + G A+ L+ F + Y+ P++ S+LS Sbjct: 177 KDD----PMFGNTPIGKVQKGGRTQAVADLQSFLNHRCQKYLHHISAPSLSDVHCSRLST 232 Query: 248 YLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +L+ G LS R+ + + + L ++ + L WR + + P + Sbjct: 233 HLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFGSRLAWRCHFVQKIEDQPEIET 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + E+ + QAW G TG+P +DA MR L GW+ R+R + SF Sbjct: 293 HCMHPAFEGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITFRMRAMLVSFASY 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR+ ++ D + + Q +G + R++NP Q DP G Sbjct: 353 QLWLDWRVSGDHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSLEHDPTGA 410 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W+PEL NVP ++IH P +W +L +YP PIV+H A + + A Sbjct: 411 FIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSFAANAAKQKIAAV 470 Query: 478 KK 479 +K Sbjct: 471 RK 472 >gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5] Length = 500 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 160/499 (32%), Positives = 245/499 (49%), Gaps = 23/499 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALMRAV-ASGRPLVCVYVDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLATLDAALARHGGRLLLLR----GDARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174 L+ L+ +S + S+L P ++ A ++V+T + +A+ ++ + A Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVAAPLPAPE 175 Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 R P R T + P D+ D E A L F + Sbjct: 176 RIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + I W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 415 NPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDH 474 Query: 464 KKACHHTLNQYYAAKKQSL 482 A L+ K S Sbjct: 475 DGARRRALDALATLPKPSA 493 >gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 497 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 162/488 (33%), Positives = 235/488 (48%), Gaps = 27/488 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYA 63 + LVWLR DLR+ DN AL+AA D KV F+ + Q G+ + R+ FI A Sbjct: 18 PLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRVEFILA 76 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ ++ +L ++G S + E + + +F R E + RD + Sbjct: 77 AVAEIDAALRERGAALIVRHAS----AREAIPVLAAELGAQAVFCGRDDEPAALARDAAV 132 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179 E+ L+ S + ++ +L + Y V+TP+R A + + + Sbjct: 133 ERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQPVDSAVT 192 Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A P + + + + L ++ Y + RD Sbjct: 193 SARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDFSRRIDDYDQARDY 252 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PA +G S LS +L G +S R+ GA WL+EL+WR+FY ++ Sbjct: 253 PARKGPSYLSVHLRFGTVSVRELVAMAWARQQAGSE----GARVWLSELVWRDFYFQILF 308 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V + F P ++I+W D AW +G TG+P++DAAMRQ+N G+MHNRLRM+ Sbjct: 309 HHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMV 367 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE YF L D DLA+NNGGWQWAAS+G D+ PYFRIFNP Q + Sbjct: 368 VASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSE 427 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 +FD G FIR ++PEL + ++ IHAP L YP PIV H A T Sbjct: 428 KFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRHDLARAET 487 Query: 471 LNQYYAAK 478 L +Y K Sbjct: 488 LERYAVVK 495 >gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6] Length = 459 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 185/472 (39%), Positives = 245/472 (51%), Gaps = 23/472 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR++DN AL AA S V+ V+I P S +S F+ A L + Sbjct: 3 IHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALDA 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + + L + + + +NR Y RRD+ +E L Sbjct: 63 QLQHHGLRLIVRH----GEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAA 118 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + D + PP IL Y VYTP+ + L ADLR + P ++ + Sbjct: 119 GCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCRDLP 178 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S+ P P+ P GE A IL +F + + Y QRD+PA+ GTS+LSPYL Sbjct: 179 VSHAIPDLLAPH----PLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTSRLSPYL 234 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G+++ RQC + GA +W+ EL WR+FY ++ +P V G F P Sbjct: 235 RFGMIAVRQCLAVAQAHPG-------PGADTWIAELAWRDFYIQVLFHHPHVLRG-AFKP 286 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + W D L AW G+TG+P++DAAMRQL GWMHNR RMI ASFL KDLL+DW Sbjct: 287 QYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTKDLLIDW 346 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YFM LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G +IR +L Sbjct: 347 RWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGDYIRRYL 406 Query: 430 PELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 PEL VP IH PH + +YP P+VDH + L Y Sbjct: 407 PELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIYR 458 >gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4] gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4] Length = 483 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 232/481 (48%), Gaps = 21/481 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR+ DN+A A + VI ++I PE+ + Q+ +++ SL+ Sbjct: 7 SPTILWFRKDLRLDDNRA-LLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + L + + +NR+Y+ + + D L+ L Sbjct: 66 LDQSLQSYGSRLVLRRGP----PGQVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAAL 121 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPA 181 + S +L P + + ++VYTPF +AL + V+ Sbjct: 122 RSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDPPPPVERPKTLHNPAH 181 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + ++ GE A L +F + Y QRD PA+ Sbjct: 182 WPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPALPH 241 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L++G +SP + W+ D+ + EL+WREF HL+ + + Sbjct: 242 TSGLSPHLALGEISPARIWHATIGLGDDVSTD---DYVHFRKELVWREFSYHLLFHFADL 298 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W K++ L AW++G TG+PI+DA MRQL G MHNR+RMI ASFL Sbjct: 299 ASQNWNDRFNDF-PWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASFL 357 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +KDL++DWR GE +F L+D D ASN WQW A +G D+ P+FRIFNP Q ++FDP Sbjct: 358 IKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKFDPD 417 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475 G +IR ++PEL +P IH P L YP P+VDHK+A L Y Sbjct: 418 GDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALEAYK 477 Query: 476 A 476 + Sbjct: 478 S 478 >gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC 23769] Length = 513 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 157/479 (32%), Positives = 226/479 (47%), Gaps = 18/479 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW RNDLR++DN AL A S V+ +F+ P+ R+H + A ++ L + Sbjct: 33 IVWFRNDLRLSDNPALSHAV-ASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHA 91 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G V D++ + Q ++ +NR+Y+ D ++ L+H Sbjct: 92 DLARMGAVLHV----ACGDALALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHA 147 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 VI SF VL P ++ A ++V+T + +A + P P Sbjct: 148 GVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRAARASGEPLPPLPAPGHVHAAVSPGA 207 Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + GE A L F + Y + RD P + Sbjct: 208 WEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGYADARDRPDLP 267 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFY 298 TS+LSP L G +SPRQ W+ +L+EL WR+F L+ Sbjct: 268 ATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWRDFAVSLLYAQ 327 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F + + W D+ L AW+QG TG+PI+DA MRQL GWMHNR+RMI A Sbjct: 328 PELVSCN-FRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHNRVRMIVA 386 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL DWR+GE +F L+D D+ASN WQW A G D+ PYFR+FNP +Q +RF Sbjct: 387 SFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNPVLQARRF 446 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP GT++R W+PEL VPT +HAP + + YP PIVD + L + Sbjct: 447 DPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVDLQGGRARALAAWKGL 505 >gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus Af293] gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus Af293] gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus fumigatus A1163] Length = 586 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 166/486 (34%), Positives = 254/486 (52%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A + +I ++I +P+ H +S + I +L Q Sbjct: 96 VFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARVDLILRTLHQ 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ LS+ I + + + C Q L+ N +YE++E+RR+ L + Sbjct: 156 LKRDLSELDIPLYMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVRLC 215 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 I ++ D+ ++PPG + + + Y VY+P+ + + L + Sbjct: 216 AKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCLEVSEEPGSNP 275 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + Q + ++P GE AL L F +EK Y E Sbjct: 276 GDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAFLEEKGRDYAE 335 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +R++ + Q TS LSPY + G+LS R + L G W+ E+ WREFYR Sbjct: 336 ERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWIGEVAWREFYR 395 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW + AW++G TGFPI+DAAMRQ WMHNR Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQAKQDKWMHNR 455 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 456 TRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 +Q +RFDP G +IR W+PEL ++ IH P++ + N YP P+++H ++ L Sbjct: 516 LQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPMLNHSQSRDLAL 575 Query: 472 NQYYAA 477 ++Y A Sbjct: 576 HRYKRA 581 >gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454] gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia rhizoxinica HKI 454] Length = 522 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 152/494 (30%), Positives = 230/494 (46%), Gaps = 32/494 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+D R+ DN AL A V+ V++ P A +++ SL + Sbjct: 24 VVWFRDDQRLADNPALEYATATGH-PVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNA 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G S + ++++ + K+ +NR+Y + D ++ L+ R Sbjct: 83 ALVALGGELTVLHGSES----QAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKER 138 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIRL 184 I + L P ++ + ++V++ + +A A R P Sbjct: 139 GIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPDN 198 Query: 185 TG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 G ++ + + + GEQ L F + Y RD+PA Sbjct: 199 IGVAARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPA 258 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------SGAFSWLNELIWREF 290 +Q TS+LSPYL G LS RQ W+ SG +L+EL WREF Sbjct: 259 MQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWREF 318 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +L+ F + + W D+ L+AW+ G TG+P++DA MR+L GWMH Sbjct: 319 SYYLLYHCA-PLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGWMH 377 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+TASFLVK LL++WR GE +F L+D D ASN WQW A +G D+ PYFRIFN Sbjct: 378 NRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFN 437 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P +QG++FDPQG ++R W+PEL VP+ +HAP L +YPLP+V H+ Sbjct: 438 PVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQ 497 Query: 465 KACHHTLNQYYAAK 478 +A L + Sbjct: 498 QARERALKAMEHMR 511 >gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 479 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 167/479 (34%), Positives = 243/479 (50%), Gaps = 23/479 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 LVW R DLR D+ ALY A +S KV VF+ Q + + R+ FI+ S+ ++ Sbjct: 13 SLVWFRRDLRDYDHAALYHALKSSK-KVYCVFVFDTAILNQLNDKADRRVEFIWESVREL 71 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL + G ++ + + V +F N YE + + RD + ++L Sbjct: 72 KTSLQKHGSDLIVLH----GNAGDEIPKLANTLLVNAVFTNHDYEPSAITRDAHVAEQLN 127 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I + D V+ +LN + + Y V+TP++ ++ + ++ PV Sbjct: 128 KSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDNHLNNLA 187 Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +P + + M L E++ Y + RD PAI+G S Sbjct: 188 KTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFIERMSRYKDARDFPAIKGVSY 247 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G +S R + +GA +WL+ELIWR+FY ++ PSV G Sbjct: 248 LSVHLRFGTISIRHLAREAMQSAN-------TGAQTWLSELIWRDFYVQILHHNPSVAAG 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + E +++ D+ L QAW G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLVKD Sbjct: 301 RAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVKD 360 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +L+D DL++NNGGWQWAASTG D+ P+FRIFNP Q +RFD QG F Sbjct: 361 LLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDAQGKF 420 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR ++PEL + IHAP + +Y P+VDH L Y Sbjct: 421 IRKYVPELTKCNDKEIHAPWLIPLLRLQELNLSIGKDYAAPVVDHATQRLQALALYKNI 479 >gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 597 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 162/486 (33%), Positives = 252/486 (51%), Gaps = 20/486 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI+DNKAL A + +IA+FI +P+ + H + + F+ +L Sbjct: 105 VHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAV 164 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 +++ L++ I + + + + + ++ N +YE++E R ++ Sbjct: 165 LKEDLAKLDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIRDF 224 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ ++ D+ ++PPG + A + Y VYTP+ +A + ++ + Sbjct: 225 AENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEKNP 284 Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232 + FD +P GE A L KFC+E + Y + Sbjct: 285 ASARKTFKKLFDIDIPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIGNYHK 344 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP+ GTS LS +L+ G +S R C ++ L G +W++E+ WR+FY Sbjct: 345 KRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVAWRDFY 404 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W+ D AW +G TGFPI+DAAMRQ+ +G+MH+ Sbjct: 405 KHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHLGYMHS 464 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI A FL KDLL+DWR GE +FM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 465 RCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 524 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + +H P++ N YP IV+HK Sbjct: 525 LLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKGCRERA 584 Query: 471 LNQYYA 476 L Y Sbjct: 585 LEAYKE 590 >gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens] Length = 503 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 156/494 (31%), Positives = 234/494 (47%), Gaps = 21/494 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + LVWLR DLR+ DN AL+ A ++I V+I + + ++ Sbjct: 1 MSSSKIPCTLVWLRQDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGKRRTGQACLWWL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 Y SL ++ LSQ I D+ L +++NR YE E RD Sbjct: 59 YHSLKSLRNQLSQWNIPLIVKSGK---DAFTILKELLDSYNADAIYWNRCYEPFEYNRDC 115 Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADL 174 +E++L V +++ D VL P +I ++Y F + + Sbjct: 116 SIEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLPQPRKPYDKPKF 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 ++ + P + + + + GE+ A+ L+ F K + Y E+ Sbjct: 176 KNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKS 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYR 292 + TS LSPYL G +SP W+ ++ +L L WRE+ Sbjct: 236 QCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTC 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 HL+ YP + K F E+++ D LQ+W+QG TG+P++DA MRQL+ G M NR Sbjct: 296 HLLFHYPDLPQ-KCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMI ASFL+K LLV W+ GEE+F S+L+D DLA N WQWAA +G ++ PYFR+FNP Sbjct: 355 LRMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPI 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 QG++FD G ++R W+PEL +P YIH P L YP PIV HK A Sbjct: 415 TQGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAA 474 Query: 467 CHHTLNQYYAAKKQ 480 L + K++ Sbjct: 475 RELALATFGQTKRK 488 >gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii SH205] Length = 480 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 174/480 (36%), Positives = 261/480 (54%), Gaps = 14/480 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R DLR+ D AL+ A N IA+ I +PEQW++H + + F LL+ Sbjct: 4 TYQLIWFRQDLRVRDQAALWHARQN--GPCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+ I +DD E+ + ++ N ++ NE++RD +++ L Sbjct: 62 LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + P SI + Y+V+ F+K+ Q L + P+P + T Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181 Query: 187 PVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + D + +GE++A ++L +F ++++ Y RD P Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +++GTSQLS YL+IG++S RQC + G +WLNEL+WREFY+H++ Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSEGQQTWLNELLWREFYQHILFD 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V PF T+ ++W DS + WK+G TG PI+DA MRQL + GWMHNR+RMI Sbjct: 302 FPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMIC 361 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 A FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++ Sbjct: 362 AMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQK 421 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G +IR W+PEL + + IH P++ L L+YP PIVD K + + + A Sbjct: 422 FDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQAL 479 >gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624] Length = 583 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 173/489 (35%), Positives = 255/489 (52%), Gaps = 19/489 (3%) Query: 11 LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL+ A + +I ++I +PE H S + +L Q Sbjct: 94 VHWFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVDLTLRTLAQ 153 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L++ I + C + LF N +YE++E+RR+ L + Sbjct: 154 LQRDLNESDIPLYMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRREARLIRLC 213 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I D+ ++PPGS+ + + Y VY+P+ +A + L + Sbjct: 214 AKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEVSEEPGANS 273 Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD + + ++P GE ALH L F KEK Y E Sbjct: 274 GDARKHFAELFDSEVPQAPANKQLSDSQKEHLSALYPAGEHEALHRLETFLKEKAVEYDE 333 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+I A Q TS LSPY + G LS R + + +LL + + G SW++E+ WR+FY+ Sbjct: 334 DRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWISEVAWRDFYK 393 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW D QAW +G TG P++DAAMRQLN WMHNR Sbjct: 394 HVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQLNHDAWMHNR 453 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +S+L KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 454 ARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 513 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTL 471 Q +RFD +G +IRHW+PEL + IH P+ + YP +VDH ++ + L Sbjct: 514 RQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVDHSQSRNRAL 573 Query: 472 NQYYAAKKQ 480 +Y A ++ Sbjct: 574 ERYKRASQK 582 >gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385] Length = 469 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 8/473 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185 + I S D + PPGS+ + +KV+TPF++A + + A+ + Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + + LR FC+E+V Y + RD PA +GTS L Sbjct: 180 ALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IGVLS RQC RL + + GA WL+ELIWREFY+HL+A P++ + Sbjct: 240 SPYLAIGVLSARQCVARL--YHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ W ++EW D+ Q W +G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G FI Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468 >gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40] Length = 588 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 245/486 (50%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 97 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 157 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 216 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I D+ ++PPG + + + Y VY+P+ ++ L+ Sbjct: 217 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 276 Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 F D + ++P GE L L F +EK Y + Sbjct: 277 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 336 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 337 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 396 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW + AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 397 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 456 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF+P Sbjct: 457 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 516 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IR W+PEL + IH P+ + N YP PIVDH L Sbjct: 517 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 576 Query: 472 NQYYAA 477 ++Y A Sbjct: 577 DRYKKA 582 >gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J] Length = 518 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 241/489 (49%), Gaps = 29/489 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V VF+ + + R+ FI AS+ Sbjct: 20 GLVWFRRDLRHFDHAALHYALRHC-REVYCVFVFDRDILDALLARGLQADRRIEFIRASI 78 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ +L + G D + + + +F N E + RD+ + K Sbjct: 79 EELRSALREAGGDLMVVH----DHPRHAIPEIARKLNIEAVFANHDEEPSAQARDEAVRK 134 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182 L Q F D V+ ILN + Y V+TP++ A + L DLR+ P Sbjct: 135 VLAQQPCAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPYLG 194 Query: 183 ----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P+ + + + + L ++++ Y +RD PA Sbjct: 195 ALARPPEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEFEDRMDDYHARRDFPA 254 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R R + GA +WL+EL+WR+FY ++ Sbjct: 255 VRGPSYLSTHLRFGTVSIRTLAARAHAAMLRGS----RGAATWLSELVWRDFYFMILHHR 310 Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W + +AWK TG+P++DAAM Q+ G+MHNRLRM Sbjct: 311 PDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLRM 370 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL +DWR GE+YF L D D ++NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 371 VAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQS 430 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +YIHAP + L YP PI+DH A Sbjct: 431 EKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGARAA 490 Query: 470 TLNQYYAAK 478 TL++Y K Sbjct: 491 TLDRYAVTK 499 >gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4] gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 567 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 169/498 (33%), Positives = 255/498 (51%), Gaps = 24/498 (4%) Query: 3 ATTAMSVH---LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISAR 56 AM+ + + W ++DLR+ DN+AL A +I ++I +PE H S Sbjct: 67 QQNAMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPA 126 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + +L Q+++ L + + + D + + C + LF N +YE++E Sbjct: 127 RVDLTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDE 186 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174 +RR+ L + I ++ D ++PPG + + + Y VY+P+ ++ + L + Sbjct: 187 LRREAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEY 246 Query: 175 --------------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 R P TP N + FP GE L L Sbjct: 247 LEVSEDPTSNPGDARRYFKELFECPVPATPENKRFDDVEKADRVRRAFPAGEHEGLRRLE 306 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 EK Y ++R+ + + TS+LSPY + G LS R + +E + + ++G S Sbjct: 307 -EFLEKATAYDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYIS 365 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W++E+ WR+FY+H++ +P +CM K F I+W+ ++ +AW G TG+P++DAAM Sbjct: 366 WISEVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAM 425 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL+ WMHNR RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG Sbjct: 426 RQLHATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGV 485 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459 D PYFRIFNP Q +RFDP G FIR W+PEL V IHAP+ + N YP P Sbjct: 486 DPQPYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEP 545 Query: 460 IVDHKKACHHTLNQYYAA 477 IVDH + L +Y A Sbjct: 546 IVDHARQRGVALRKYKDA 563 >gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Acinetobacter sp. ADP1] Length = 477 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 180/475 (37%), Positives = 262/475 (55%), Gaps = 12/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W RNDLR+ D+ AL+ A IA +P QW+QH + + F L Q++ Sbjct: 3 QLIWFRNDLRLNDHAALWHATQA--GSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ I + D + S + + ++ N + INE+ RD +++ L Sbjct: 61 QELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-------VQADLRSLPVPA 181 P GSI N + Y+V+TPF+K + L + P Sbjct: 121 IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPE 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 I PS + Q I +PIGE AL++L F ++K+ Y E RD PA G Sbjct: 181 IAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS +S YL+IG+LS RQC + ++ G WLNEL+WREFY+ L+ +P + Sbjct: 241 TSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF T+ I WN++ +AW QG TG PI+DA MRQL GWMHNR+RMI A FL Sbjct: 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE++FM L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP Q ++FDP+ Sbjct: 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G F++ W+PEL ++ +++IH P+++ K +L NYP PI+D K + + + Sbjct: 421 GVFLKKWIPELKHLDSKHIHDPYAYQHKTEL--NYPKPIIDLKATRKNAIEVFKK 473 >gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407] Length = 584 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 173/492 (35%), Positives = 254/492 (51%), Gaps = 25/492 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR DN+AL A + +I +++ +P+ W H + + F+ +L Sbjct: 89 VHWFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAV 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L++ GI + S + LF N +YE++E+RR+ + ++ Sbjct: 149 LQRDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQC 208 Query: 128 QHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D V+ P + + Y VYTP+ +A Q++ + P+ + Sbjct: 209 AAQGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQ 268 Query: 186 GPVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYY 230 D P + ++P GE A+ L FC E+V Y Sbjct: 269 AKTKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADY 328 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWRE 289 ++RD PA++ TS LSPYL+ GVLS R ++ L G W++E+ WR+ Sbjct: 329 SDERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRD 388 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 FYRH++ +P VC KPF I W+ + AW +G TG+PI+DAAMRQLN GW+ Sbjct: 389 FYRHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWL 448 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RMI ASFL KDLL+DWR+GE YFM L+DGD ASN+GGW ++AS G D PYFRIF Sbjct: 449 HNRCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIF 508 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465 NP +Q +RFDP GT+IR W+PEL + + IH P+ + YP PIV HK+ Sbjct: 509 NPILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQ 568 Query: 466 ACHHTLNQYYAA 477 A L Y A Sbjct: 569 AREAALEAYKKA 580 >gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 477 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 232/483 (48%), Gaps = 24/483 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ + W R DLR+ DN +L AA D V+ +FI + H A +++ +L Sbjct: 4 SIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHALNA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL K C D ++ + + + +F+NR YE + RDK+L+ L Sbjct: 62 LNMSLDGKL-------CVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNL 114 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + L P ++L Y+V+TPF + N L A++L Sbjct: 115 TNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQLVA 174 Query: 187 PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 S + + IGE A+ L F + + Y + R+ PA Sbjct: 175 DPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPARPH 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS +L G +SP W E+ + +L+EL WREF L+ +P + Sbjct: 235 TSRLSAHLHWGEISPNMAWYAAIEKRDQAG--FDNDIDVFLSELGWREFSHSLLYHFPHL 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P + W D + L+AW+QG TG+PIIDA MR+L G+MHNR+RMI SFL Sbjct: 293 PRQN-LQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGSFL 351 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+ W GE +F L+D DLA+N+ GWQW A G D+ PYFR+FNP QG +FD Sbjct: 352 VKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFDAD 411 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G++ R ++PEL +P +Y+ +P L +YP PIVD K++ L + Sbjct: 412 GSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAAFA 471 Query: 476 AAK 478 + Sbjct: 472 TTR 474 >gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506] Length = 479 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 149/481 (30%), Positives = 232/481 (48%), Gaps = 17/481 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R+DLR+ DN AL+AA S ++ +++ E + ++ +L Sbjct: 4 SPALVWFRDDLRLADNPALHAA-QRSGRPLVLLYLLDEESEGIRPLGGAARWWLGRALAS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +++ KG + + E + + + + +++NR+Y E+ D L+ L Sbjct: 63 VTEAIEAKGGQLILRR----GKAGEVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALKTEL 118 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183 + + + L P ++ + +KV+ PF + Q+ ++ R Sbjct: 119 AQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHDIRRPARVGSHWHFAETP 178 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE L F + Y RD P ++ TS Sbjct: 179 AGDELRDWKLEPTTPDWAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRDRPDMEHTS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP+Q ++ D + +++EL WREF HL+ +P + Sbjct: 239 RLSPYLRFGHLSPQQVLAAVR-HAADAGEVRGTDVEKFVSELYWREFSYHLLFHFPDLAQ 297 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + EWN+D+ + +AW++G TG+P+IDA MRQL GWMHNR+RM+ ASFL+K Sbjct: 298 VN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVAASFLIK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LVDWR GE +F L+D D A+N WQW A +G D+ PYFRIFNP QG++FDP G Sbjct: 357 HALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGEKFDPDGA 416 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R ++PEL +P IH P L YP PIVDH A L +Y Sbjct: 417 YVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRRALERYQRI 476 Query: 478 K 478 + Sbjct: 477 R 477 >gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 478 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 156/483 (32%), Positives = 222/483 (45%), Gaps = 21/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHN--------SDAKVIAVFIATPEQWRQHGISARQSHF 60 + L W R+DLR DN+ L A +D +I VFI + + Sbjct: 1 MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADG-IIPVFIFDDNALE--HDGNARVQY 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++ + + D + L V ++ +NR+Y RD Sbjct: 58 MLESIAELRSWYRDRDSDLLIAR----GDPVSILPELASTHDVDRVVWNREYSGFAQSRD 113 Query: 121 KLLEKRLQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L I + PGSI + + Y VYT F K A + + Sbjct: 114 QQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDAPDA 173 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + S + + P G A + L FC + +Y Y + RD P+ Sbjct: 174 DMFVPDEGIGDSLPTIDSLGFEEPTADIQPAGTNAARNRLSDFCADGIYRYDDDRDYPSR 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S+LS LS G + R E + + ++L WREFY H++ F Sbjct: 234 DAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTHVLYF 293 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P V + + I+W D LQAWK G TG+PI+DA MRQL + +MHNRLRMI Sbjct: 294 NPEVVTEN-YKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIV 352 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDLL+DWR G +F L D ++A+NNGGWQWAASTG D+ PYFRIFNP QG+R Sbjct: 353 ASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGER 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +DP +I+ ++PEL VP IH H ++ L +YP PIVDH K L + Sbjct: 413 YDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKALEMFE 472 Query: 476 AAK 478 A+ Sbjct: 473 TAR 475 >gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 481 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 195/487 (40%), Positives = 279/487 (57%), Gaps = 24/487 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W+R DLRI DN AL AA N AVFI+TP+QW+QH ++ ++ IY L Sbjct: 1 MS-DILWIRRDLRIHDNPALVAAVENGVTT--AVFISTPQQWQQHHLAPIKADLIYRHLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L++ GI + + +FDD L Q T ++ N + E V ++ Sbjct: 58 QLESQLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPE---VDEQLRDKRL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + K D +LP GS+LN +M+KV+TPF+ A ++ + + P P Sbjct: 115 IASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKL 174 Query: 187 PVTPSNIP------------------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 TP + + +P+ + ++ F KV Sbjct: 175 QQTPLQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVN 234 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y RDIP+I+GTS LSPYL+IG +SPR +L ++ DLL + AFSWLNELIWR Sbjct: 235 DYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWR 294 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +FY+HLM +P + G F ++W D+ +AW +G TG+P++DAAMRQL GW Sbjct: 295 DFYKHLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGW 354 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRI Sbjct: 355 MHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRI 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FNP Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN + Y PIV+HK+A Sbjct: 415 FNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEARL 474 Query: 469 HTLNQYY 475 L + Sbjct: 475 RALAFFK 481 >gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150] gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113] Length = 480 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 191/484 (39%), Positives = 269/484 (55%), Gaps = 17/484 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK LS I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLR 175 L H F D + P SI N + Q Y+V++ F+KA L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK 178 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQ 233 VP L G + + + +P+GEQ AL L +F ++ V +Y + Sbjct: 179 QNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVE 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD P IQ TS+LSPYL+IG+LS RQC L G +WL+EL+WREFY+H Sbjct: 239 RDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQH 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 ++ +P V PF ++KI+WN + L AW+ G TG PI+DA MRQL GWMHNR+ Sbjct: 299 ILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRV 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Sbjct: 359 RMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIA 418 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FD +G +IR W+ EL ++ + IH P+S K+DL LNY PIVD K+ + Sbjct: 419 QSKKFDLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIET 476 Query: 474 YYAA 477 + Sbjct: 477 FKNI 480 >gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus DX253] Length = 464 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 158/475 (33%), Positives = 238/475 (50%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+ W R DLR+ DN+AL + V+ VF+ + + F+ ++L + Sbjct: 1 MHVHWHRRDLRVADNRALSR-----GSPVLPVFVFDGAVLS--HAAPPRVSFMLSALESL 53 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++S ++G + D E + ++ +NR Y RD + L Sbjct: 54 RESYRERGGDLLVLR----GDPREEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + LL PGSI + Y VYT F K A + + Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 IP D F+ + P G + A +L FC++ VY Y + RD PA + TS+LS Sbjct: 170 EEGIEIPTLADLGFEDPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARESTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G + R+ W + + + +L WREFY H++ PSV + Sbjct: 230 PHLKFGTVGIREVWEATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDTPSVVVEN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W D ++AWK G TG+PI+DA MRQL W+HNR+RMI ASFL KDL Sbjct: 290 -YKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 LVDWR G +++ +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RFDP +I Sbjct: 349 LVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPDAEYI 408 Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL +VP + +H ++ +L+ +YP PIVDH + + + A+ Sbjct: 409 KRFVPELADVPPKTVHEWTELDPDERRELAPDYPDPIVDHSERREMAITMFENAR 463 >gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str. 8004] Length = 484 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 225/484 (46%), Gaps = 15/484 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I P + Q A + Sbjct: 8 RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL +G Q DS + LD+ Q +++NR+YE RD Sbjct: 67 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R +S + ++L P ++ + YKV+TPF + + L D P Sbjct: 123 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRS 182 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + ++ Q + GE A +L F + Y E RD Sbjct: 183 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 242 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQRSARNGADIDG---YIRQLGWRDFAYHLLH 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + D L AW++G TG PI+DA +RQL GWMHNR+RMI Sbjct: 300 HFPDTTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMI 359 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q + Sbjct: 360 VASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQY 474 +FDPQ T+I W+PEL +P + AP L+ YP PI+ + L Y Sbjct: 420 KFDPQATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAY 479 Query: 475 YAAK 478 + Sbjct: 480 AGTR 483 >gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans] Length = 811 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 253/488 (51%), Gaps = 22/488 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN L A ++ VI V+I +P+ W H +S + F S+ Sbjct: 317 IHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKCDFELRSVEA 376 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 + K L++ I S + + + V ++ N +YE +E R ++L+ Sbjct: 377 LSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELRREERLVRLM 436 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ + D ++PPGS+ + Y VY+P+ ++ + +L Sbjct: 437 LQKGINFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWLAHLHAHPHLLNERTMPEKNP 496 Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD + ++P GE A+ LR+F EKV Y + Sbjct: 497 SGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAIERLRRFLTEKVAKYND 556 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291 R+ P + T ++S + + G L+ R ++ L K G W++E+ WR+FY Sbjct: 557 TRNFPNLNSTGRVSAHHAAGTLAARTSVRLARDMNTSKKLDGGKDGIKVWISEVAWRDFY 616 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF IEW + ++W QG TG+PI+DAAMR LN +MHN Sbjct: 617 RHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYPIVDAAMRSLNQTAYMHN 676 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 677 RLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 736 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSL--NYPLPIVDHKKACH 468 +Q ++FD +G FIR W+PEL V IH P++ K ++ YP PIV+HK A Sbjct: 737 WLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIAKKNRYPEPIVEHKFARE 796 Query: 469 HTLNQYYA 476 L +Y A Sbjct: 797 RCLARYKA 804 >gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001] Length = 591 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 172/485 (35%), Positives = 253/485 (52%), Gaps = 20/485 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN++L A + +IA+FI +P+ + H + + F+ +L Sbjct: 99 VHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRVDFMLRTLHT 158 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L++ I + + Q + LF N +YE++E+RR+ + + Sbjct: 159 LRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELRREAKMVRMF 218 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R + + D+ ++PPG + + + + Y VYTP+ +A ++++ Sbjct: 219 ADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLELCHPPAKNP 278 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P T FD + +FP GE A L KFC+EKV Y Sbjct: 279 PSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKFCEEKVGQYHN 338 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 +R+IP GTS LS +L+ G +S R C ++ L G W++E+ WR+FY Sbjct: 339 KRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIEGIRVWISEVAWRDFY 398 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KP+ P IEW+ D +AW G TGFPI+DAAMRQ++ +GWMHN Sbjct: 399 KHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDAAMRQMHAMGWMHN 458 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI A FL KDLL+DWR+GE YFM L+DGD ASNNGGW ++AS G D PYFRIFNP Sbjct: 459 RCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 518 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470 +Q ++FDP G +IR W+PEL + + IH P+ YP IVDHK Sbjct: 519 LLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYPQQIVDHKGCRERA 578 Query: 471 LNQYY 475 L Y Sbjct: 579 LAAYK 583 >gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24] Length = 478 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 234/486 (48%), Gaps = 24/486 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW R DLR+ DN AL A S +V+ ++I + + ++ SL Sbjct: 5 TKSIVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWWLNESLRS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S ++ D + ++ + ++ +F+NR YE +V RDK ++ + Sbjct: 63 LNES---MNGALCLYR----GDPLGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEV 115 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +SF+ +L P I YKV+TPF K + V IR Sbjct: 116 RKFGAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYVSKIRFVS 175 Query: 187 PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + GE+ +L+ F + + Y RD P + Sbjct: 176 NSKKNREIDSLNLLNENDWSTEMASRWTPGERGGEQVLKLFLERGLCNYKIGRDFPDKEA 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSPYL G LSP W+ K +L ++ A + EL+WRE + + + Y Sbjct: 236 VSRLSPYLHFGELSPNYVWH--KVNNFAVLENIETQAEHFHRELVWRE-FSYSLIHYFPD 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + W K+ ++ W+ G TG+P+IDA MR+L + G+MHNR+RMITASFL Sbjct: 293 LTYRNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRVRMITASFL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+LL+DWR G E+F L+D DLA+N+ WQW A +G D+ PYFRIFNP Q K+FDP Sbjct: 353 VKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVTQSKKFDPD 412 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 +IR W+ EL P +YIH P S + L YP IVD K + L Y Sbjct: 413 AKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSREAALRAYQ 472 Query: 476 AAKKQS 481 + K +S Sbjct: 473 SLKGRS 478 >gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter phenanthrenivorans Sphe3] Length = 478 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 150/483 (31%), Positives = 218/483 (45%), Gaps = 22/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VWLR+DLR+ DN AL AA + V+I + + + +++ SL + Sbjct: 7 TSIVWLRDDLRLDDNPALAAAVDLG-LPLTVVYILDEDSEGVRPLGSASRWWLHHSLASL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + L LF+NR+Y + E D ++ Sbjct: 66 ASSLEASGSRLLLQRGP----AEPILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAG 121 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 I S+ ++L P +I A YKV+TPF +A + + D S P Sbjct: 122 ENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAG 181 Query: 186 --------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + + + GE+ A L F + Y R+IP Sbjct: 182 KTGSGPAGDALETWRLFPSSPDWSGGLAKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIP 241 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 ++GTS+LSP+L G +SP + W ++ F + + + +EL WREF HL+ Sbjct: 242 GVEGTSRLSPHLRFGEVSPFRVWREIRGRFPREV---PADVGIFRSELGWREFCWHLLYT 298 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + L AW+QG TG+P +DA MRQL GWMHNR+RM Sbjct: 299 NPDLATRNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMAA 358 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFLVK+LL DWR GE +F L+D D ASN WQW A +G D+ PY+RIFNP Q K+ Sbjct: 359 ASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSKK 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G ++R ++PEL + + IH P D YP P+VD + L Y Sbjct: 419 FDAAGNYLRQYIPELAGLEAKAIHEPWKAADGL---HGYPRPLVDLPGSRERALAAYQKL 475 Query: 478 KKQ 480 K Sbjct: 476 KDS 478 >gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 466 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 147/478 (30%), Positives = 225/478 (47%), Gaps = 17/478 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR TDN L AA +D+ V+ VF+ + + F+ +L + Sbjct: 1 MRIHWHRRDLRTTDNAGLAAA--TADSPVVPVFVFDDAVLD--HAAPPRVAFMLDALDSL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +G D + + + Y + RD + + L Sbjct: 57 RAQYRDRGSDLVIAH----GDPTAEIPRLAEAFGADGVTWGEAYSGLGIERDIAVRQALD 112 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + PG I + Y V+T F + + P Sbjct: 113 DVGVEREAVTDSVHHRPGEITTNDGDPYSVFTYFGRKWHDREKEDPY---DAPGPDELAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V+ +P D F+ P G + A +L FC++ +Y Y ++RD PA TS+LS Sbjct: 170 VSGDPLPSVGDLGFEEPQAEIPPAGTEPARELLDAFCEDDIYRYEDRRDYPADDCTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G + R+ + R + + + ++L WREFY ++ SV Sbjct: 230 AHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYTQVLFANRSVVTDN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + ++W D LQAWK G TG+PI+DA MRQL ++HNR+RMI ASFL KDL Sbjct: 290 -YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNRVRMIVASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 349 LIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 408 Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + ++PEL + IH S + + + YP PIVDH + L + A+ +S Sbjct: 409 KTYVPELRDAEPSVIHEWPDLSLTQRRNAAPEYPDPIVDHSERRDQALEMFETARGES 466 >gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique HTCC1062] gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1062] Length = 473 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 233/482 (48%), Gaps = 24/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW+R D RI N+AL A N + V A++I P+ + + Q ++ SL + Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKR--EAQKWWLSKSLENLS 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + I + D +E L + VT + + K+ + +++ Sbjct: 62 IDLKKLNITLEVQ----LGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKN 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAIRL 184 + K F ++L+ + YKV+TPF K Q+ + + I + Sbjct: 118 EIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINI 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + E+ A L++ K+ Y + RDIP + GTS+ Sbjct: 178 FKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSK 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + W + ++ V G ++NEL WREF L+ ++P + G Sbjct: 238 LSPFLKFGQIHVETIWKKCQDIKVKK-----IGYRKYINELGWREFSHSLINYFPQMLKG 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+RMI ASFLVK Sbjct: 293 N-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVKH 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP +QG++FD G + Sbjct: 352 LRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKDGIY 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + W+PEL N+P ++++ P K + +NYP PI+DH +A + L+ + K Sbjct: 412 TKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEARNAALDAFKTIK 471 Query: 479 KQ 480 K Sbjct: 472 KN 473 >gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens SK82] gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter radioresistens SH164] Length = 479 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 189/481 (39%), Positives = 260/481 (54%), Gaps = 15/481 (3%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV LVW R DLRI D+ AL+ A IA+ +P QWRQH + + L Sbjct: 1 MSVYQLVWFRQDLRIVDHSALWHARQT--GPCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L Q I + + E+L C V ++ + + INE +RD+ ++ Sbjct: 59 KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178 L I + P GSI N Q Y+V+ F+KA L A + Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178 Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +PA+ P ++I ++P E +A +L +F + + +Y +RD Sbjct: 179 PITLPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA GTSQLS YL+IGVLS RQC L + + G WL+EL+WREFY+H++ Sbjct: 239 FPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHIL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P+V PF I W D L AW+QG TG PI+DA MRQL GWMHNR+RM Sbjct: 299 YLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITA FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP Q Sbjct: 359 ITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++FDP+G +IR W+PEL ++ + IHAP+ L +YP PIVD K + ++ + Sbjct: 419 RKFDPEGQYIRTWIPELAHLDAKTIHAPYESKTVQQL--DYPKPIVDLKYSRARAIDHFK 476 Query: 476 A 476 Sbjct: 477 Q 477 >gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908] Length = 469 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 187/473 (39%), Positives = 274/473 (57%), Gaps = 11/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W+R DLR DN AL A N A+FI+TP+QW H + + FI LLQ+ Sbjct: 1 MVLLWIRRDLRCFDNPALMDAVANGCR--YALFISTPQQWDLHHEAPIKLDFIRRHLLQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L + G+ + ++F E L +C + + ++ N + E + L Sbjct: 59 EQQLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPE---FNEQQRDRSLLS 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +D V+ P G +LN + +M+KV+TPF+KA ++++ + + + P Sbjct: 116 SGLDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQGLSKPLS 175 Query: 189 TP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P ++ +P+ ++ ++ F KV Y E+RD PAI+GT Sbjct: 176 PPARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+IG LSPR + +L + L+ AF WLNELIWR+FY+HL+ YP + Sbjct: 236 SGLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLS 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F+ K +W AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL Sbjct: 296 KQTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G Sbjct: 356 KHLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNG 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR +LPELN++PT+YIH PH ++ K+ +S Y P+V+HK A + Y Sbjct: 416 DFIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAARLRAIAFYK 468 >gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis ANT/505] Length = 464 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 184/467 (39%), Positives = 263/467 (56%), Gaps = 9/467 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ N+AL A +N A+F + +QW+QH + Q + + +Q Sbjct: 4 LFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQS 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ GI + +F D L ++C V + N +YE+NEV RDK + Sbjct: 62 QLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDEL 121 Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + + + P G++ N + +MYKV+TPF++A ++ P Sbjct: 122 SITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQWPLT-----SD 176 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P +P+ ++ ++ F +K+ Y +QRDIP+++GTS LSPYL Sbjct: 177 PIEFDESDLLKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGLSPYL 236 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++G++S +Q +++ + D+L KS F+W+NEL+WREFYRHL+A +P + G F Sbjct: 237 ALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGDNFNE 296 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + W K +AW +G TG+P++DAAM QL GWMHNRLRM+ ASFL K LL+DW Sbjct: 297 KYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLIDW 356 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FIR +L Sbjct: 357 REGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFIRKYL 416 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 PEL NVP ++IH PH++L Y IVDHK A L + Sbjct: 417 PELENVPDKHIHFPHTYLAATGKDKECYWPAIVDHKAARERALAAFK 463 >gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1] Length = 475 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 191/476 (40%), Positives = 270/476 (56%), Gaps = 7/476 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL WLR+DLRI DN AL AA IA+++ +P QW+ H +A + F +L + Sbjct: 1 MHLTWLRSDLRIDDNTALSAATER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++SL I + +D + + + C Q +V + +N +Y INE +RD L+ Sbjct: 59 RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L PG+IL + ++V++ F+K +++L ++ + Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVERQAPLQ 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP+ F+ P +A+ +P GE A L +F E + Y + RD+PA GTSQ Sbjct: 179 IQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKHGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + +G +W+NEL+WREFY+H++ YP V Sbjct: 239 LSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W L+AWKQG TGFPIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q +RFDPQG F Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 IRHWLPEL ++ + IH P D + +Y P+V + L + ++ Sbjct: 419 IRHWLPELRDMDEKTIHEPMK-SDDLFANNSYHRPMVILGSSRQRALEAFKGLPRR 473 >gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium petroleiphilum PM1] Length = 497 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 233/495 (47%), Gaps = 38/495 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR D+ ALY A + +V F+ E + R+ FI SL+ + Sbjct: 12 ALVWCRRDLRAHDHAALYHALRAA-RRVWVAFVFDTEILDPLPRTDRRVEFIRDSLVDLD 70 Query: 70 KSLSQKG-------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L G + + + + V ++ N YE V RD Sbjct: 71 AQLHTLGRSHGTEGVGLIVRH----GRARDEIPRLAAALHVQAVYANTDYEPAAVARDAQ 126 Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L I D V+ +L A Y V+TP++ A ++ L P Sbjct: 127 VRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKL--EPFYLQAYPV 184 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP---------IGEQNALHILRKFCKEKVYYYVE 232 R G + P P A P G +L F E++ Y + Sbjct: 185 GRHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERIDRYDQ 244 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD PA++G S LS +L G LS R+ + GA WL+ELIWR+FY Sbjct: 245 TRDFPAVKGPSYLSVHLRFGTLSIRELARLAWDRARAGS----RGAEVWLSELIWRDFYH 300 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++ +P V + + F P +KI+W H AW +G TG+P++DAAM Q+N G+M Sbjct: 301 QVLHHHPQV-VERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAMLQINQTGYM 359 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRM+ ASFL KDL +DWR GE YF +L D DLA+NNGGWQWA+S+G D+ PYFRIF Sbjct: 360 HNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGCDAQPYFRIF 419 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463 NP Q ++FD QG FIR +LP+L +P +HAP L +YP PIV H Sbjct: 420 NPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGRDYPEPIVRH 479 Query: 464 KKACHHTLNQYYAAK 478 + A TL +Y K Sbjct: 480 ELARERTLARYAVVK 494 >gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581] Length = 502 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 188/473 (39%), Positives = 267/473 (56%), Gaps = 7/473 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R+DLR+ DN AL AA S+ V+AVF+ + QW +HG A + F + +L Sbjct: 1 MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L GI + +F + + L + + +L +N +Y +NE RRD + Sbjct: 59 ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D V PG + Y ++TPF KA + + L +PAI+ + Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV P P +P GE A L +F + + +Y E+RD PA GTS Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL++G++S RQC E L + +G +W+NELIWREFY+H++ +P VC Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F TE + W D+ +AW +G TG+P++DAAMRQL GWMHNRLRM+TA FL K Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +F+ L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP Q +RFDP G F Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I WLPEL ++P + H P + + YP+PIV+H+ A L + Sbjct: 419 IAEWLPELADLPAKERHDP---SPEQRAARRYPMPIVEHRAARARALEAFKGL 468 >gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Candidatus Pelagibacter ubique HTCC1002] Length = 473 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 148/482 (30%), Positives = 233/482 (48%), Gaps = 24/482 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW+R D RI N+AL A N + V A++I P+ + + Q ++ SL + Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKR--EAQKWWLSKSLENLS 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + I + D +E L + VT + + K+ + +++ Sbjct: 62 IDLKKLNITLEVQ----LGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKN 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAIRL 184 + K F ++L+ + YKV+TPF K Q+ + + I + Sbjct: 118 EIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINI 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + E+ A L++ K+ Y + RDIP + GTS+ Sbjct: 178 FKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSK 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + W + ++ V G ++NEL WREF L+ ++P + G Sbjct: 238 LSPFLKFGQIHVETIWKKCQDIKVKK-----IGYRKYINELGWREFSHSLINYFPQMLKG 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W K+ L+AWK G TG+PI+DA MR+L GWMHNR+RMI ASFLVK Sbjct: 293 N-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVKH 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W GE++F + L+D + ASN WQW A G D+ PYFRIFNP +QG++FD G + Sbjct: 352 LRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGIY 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + W+PEL N+P ++++ P K + +NYP PIVDH +A + L+ + K Sbjct: 412 TKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEARNAALDAFKTIK 471 Query: 479 KQ 480 K Sbjct: 472 KS 473 >gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3] Length = 488 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 223/476 (46%), Gaps = 18/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN ALY A ++ VFI + A ++ SL + Sbjct: 12 VLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDP--DRPAGAASLWWLDKSLRALDD 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++G + DS+ L S LF NR +E RD + L+ Sbjct: 69 SLRERGSRLILRR----GDSLTQLQSLIEDTGADALFMNRLFEPAAFARDAEIAHELKSA 124 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + LL + + + + + I V Sbjct: 125 GVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRIATPDAVQT 184 Query: 191 SNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 +I + +P ++ + GE A L F + Y + RD PA+ TS+LSP Sbjct: 185 ESIDDWRLHPTRSDWSKGFDWTPGEAGADAALSDFLARGLKTYAKGRDHPALPTTSRLSP 244 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +SP + + D P A ++ EL WR+F HL+ +P + F Sbjct: 245 HLHWGEISPWR-AAQRARGAADAGAVPAGEADKFVAELGWRDFSAHLLHHFP-TITDRAF 302 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P E + W D L+AWK+G TG+P++DA MRQL T GWMHNR+RM+ ASFLVK LL+ Sbjct: 303 RPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVVASFLVKHLLI 362 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE +F L+D DLASN WQW A +G D+ PYFRIFNP QG++FD G ++R Sbjct: 363 DWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEKFDATGGYVRR 422 Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL +P +++ +P + L +YP PI+DH +A L+ Sbjct: 423 WVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARALDALKTV 478 >gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina 98AG31] Length = 578 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 164/497 (32%), Positives = 241/497 (48%), Gaps = 24/497 (4%) Query: 3 ATTAMSVHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58 + + W+R DLR+ DN+AL AA + A +I + I +P + H SAR+ Sbjct: 60 KNDKKPIVVYWMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRI 119 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L+ ++ L + I + + VT++F N ++E++E+R Sbjct: 120 DFVLRNLIDLRLRLRELNIPLYTISIEKRKTIPKRVVELLNAWEVTRIFANIEHEVDELR 179 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 RD L + I L + + N++ +DL + Sbjct: 180 RDIELINLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNWANIINSDLSNHL 239 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233 A + G + F+ P F G + ++ + Sbjct: 240 DAAPEIKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTI 299 Query: 234 -------RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAF 279 R+ P + GTS+LS YL+ G++SPR C E+ + +G Sbjct: 300 LEEYSTLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIG 359 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 W +EL WR+FY+H++A +P V MG+ F + + W KD L+AWK G TGFP IDA Sbjct: 360 MWQSELGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDAC 419 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL +G+MHNR RM A FL KDLL+DWRIGE++FM L+DGDL SNNGGWQW++STG Sbjct: 420 MRQLLEMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTG 479 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPL 458 DS PYFRIF P Q ++ DP G FIR ++PELN++ + IH P+ L + YP Sbjct: 480 CDSQPYFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPK 539 Query: 459 PIVDHKKACHHTLNQYY 475 PIVDH L +Y Sbjct: 540 PIVDHSVVRKRALVRYK 556 >gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571] Length = 484 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 140/486 (28%), Positives = 214/486 (44%), Gaps = 19/486 (3%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS ++W R+DLR+ DN A AA S +V+A+++ + + ++ Sbjct: 1 MSAAGTAVIWFRDDLRLADNPA-LAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAG 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ L Q G+ + ++ + + +N + E D+ + Sbjct: 60 SLRALKAELGQHGVPLVLRR----GEAGRIVPDVARAAGADLVAFNWRAGKAEQAVDEAV 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL----QMYKVYTPFRKALIQNLVQADLRSLPV 179 + L + LL + + + + + L Sbjct: 116 ARHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKGRDIGRTLPVPRLNG 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + + + + GE A L F + + Y E RD P Sbjct: 176 AAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDRPDQ 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LSPYL G +SPRQ D P + EL WREF HL+ P Sbjct: 236 THVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFAVP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + W + L+ W++G TG+PI+DA MRQL GWMHNR+RMI AS Sbjct: 295 DLARRN-LQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+ W+ GE +F L+D DLA+N WQW A +G D+ PYFRIFNP +QG++FD Sbjct: 354 FLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFD 413 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQY 474 P+GT++R ++PEL +VP + IH P S + L +YP P+V+H A L + Sbjct: 414 PEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRALRAF 473 Query: 475 YAAKKQ 480 +K Sbjct: 474 EHTRKD 479 >gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans CB1190] Length = 462 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 210/473 (44%), Gaps = 23/473 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ D AA + A +A+F+ P + F+Y L + Sbjct: 5 SVVWFRRDLRVRDQPIFLAAADSGPAA-LALFVLDPALLD--PSGPARRTFLYGCLRALD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128 +L G + D + + + + RRD+ +E+ L Sbjct: 62 DAL---GGRLLVVR----GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAV 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + PG + ++V+TPFR+ + + + + Sbjct: 115 DGRELVRTGSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAATVRWIDPSD 174 Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S + +D P GE A + F + V Y E R+ P ++GTS++S Sbjct: 175 EGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMSV 234 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G + PR + L A ++ EL WREFY ++ P Sbjct: 235 YLKWGCIHPRTMLHDLSRHRSG-------SAETYRTELAWREFYADVLFRRPDSARHNYD 287 Query: 308 IPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + L AW++G TGFPI+DA MRQL WMHNRLRMI ASFLVKDL Sbjct: 288 RAFDALPSASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASFLVKDL 347 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W G +FM L+DGDLASN GWQW A +G D PYFRIFNP QG+RFDP G ++ Sbjct: 348 HLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDPDGDYV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL +VP + +H P D + YP PIVDH+ L +Y K Sbjct: 408 RRFVPELADVPGRAVHQPWKLPD--GVPDGYPQPIVDHRAERDEALARYERVK 458 >gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f] Length = 472 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 215/475 (45%), Gaps = 19/475 (4%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 WLR DLR+ DN AL AA V+A+F+ R + F+Y L + + L Sbjct: 3 WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCR--PAGPVRLAFLYRCLRDLDRRL 58 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + C D + + + + + + RRD+ + + L Sbjct: 59 A-------GRLCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111 Query: 133 C-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + + PG ++ Y+V+TPF +A + + P L Sbjct: 112 ELRRTGSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAHGWPEPVAPAPTEPDWLDPASLSG 171 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P + P GEQ A L F + + Y RD PA TS+LSPYL Sbjct: 172 GSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADVTSRLSPYLKW 231 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKPF 307 G + PR + ++ GA + +E+ WREFY ++A PS Sbjct: 232 GCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAANPSSARSD-L 290 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++ + +AWK G TG+PI+DA MRQL GW+HNR+RMI ASF+ KDL V Sbjct: 291 SETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLHV 350 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP QG+RFDP G +IR Sbjct: 351 HWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFDPDGEYIRR 410 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+PEL +P + +H P PIVDH L ++ A+ S Sbjct: 411 WVPELRGLPAELVHEPWKCPGGPPNGYP--GPIVDHAVERRDALARHAQARNASA 463 >gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 468 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 188/471 (39%), Positives = 269/471 (57%), Gaps = 6/471 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W R DLR+ N+AL A +N A+F +QW+QH + Q + + Sbjct: 1 MNT-LFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRIT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F D L +C V + N +YE+NEV RDK + + Sbjct: 58 YLHQQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAK 117 Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 I + + + P GS+ N + +MYKV+TPF++A ++ ++ P ++ Sbjct: 118 CDELSITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHVS 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G S + + P+ ++ ++ F +K+ Y + RDIP+I+GTS L Sbjct: 178 GGAQLSKNETNLLKGDSSSEKW-PVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGL 236 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G++S +Q +++ + D+L KS F+W+NELIWREFYRHL+A +P + G Sbjct: 237 SPYLALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGD 296 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + W +AW +G TG+P++DAAMRQL GWMHNRLRM+ ASFL K L Sbjct: 297 NFNEKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHL 356 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FI Sbjct: 357 LIDWRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFI 416 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 R ++PEL NVP ++IH PHS+L S + Y IVDHK A L + Sbjct: 417 RKYIPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAFK 467 >gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4] Length = 527 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 109/491 (22%), Positives = 168/491 (34%), Gaps = 29/491 (5%) Query: 1 MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M + M V +VW + DLR D+ L A V+ +++ P+ W Q +S R Sbjct: 1 MGDRSNMRAPVQIVWFKKDLRTYDHAPLLKAAQA--GPVLPLYVIEPKLWMQPDMSGRHF 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL+ ++ L G+ DD I L + + L+ + + Sbjct: 59 AFLKESLVDLRDDLQGLGVRLVL----KVDDIIHVLTDLKSRHAIAALWSHEETGNGWTF 114 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + + T + P Sbjct: 115 ARDKRVSAWCRASGVHWHELRQTGVVRRLKGRTGWARQWDTVMGD---------PIAHRP 165 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P P G Q AL L F + Y P Sbjct: 166 QNIAAVLEPSDPFPSQHELGLNPDPCPYRQTGGRQAALATLDSFLTRRGRPYQCAMSSPV 225 Query: 239 --IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S+LSP+++ G LS R+ + L P G SW + + H Sbjct: 226 TAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAMRSFSGRLHWHC 285 Query: 297 FYPSVC-------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + + D L QAWK G TG P +DA MR L+ GWM Sbjct: 286 HFMQKLEDEPRLEFENLHQAYDGLRPSVPDETLFQAWKAGETGLPFVDACMRALSATGWM 345 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R+R + + L +DWR + D + + Q +G + RI+ Sbjct: 346 NFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIHWP--QVQMQSGTTGINTVRIY 403 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH 468 NP QG DP G F+R W+PEL ++ Q+IH P + L YP P+VDH A Sbjct: 404 NPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEPWKADNAGRVLGKRYPFPVVDHLSAAK 463 Query: 469 HTLNQYYAAKK 479 + +A +K Sbjct: 464 EAREKVWAIRK 474 >gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 465 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 228/474 (48%), Gaps = 16/474 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R DLR TDN L AA + V+ VFI + F+ +L + Sbjct: 1 MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLD--HAGPPRVAFMLDALDSL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ KG + D L Q K+ + + Y RD + + L Sbjct: 57 REWYRDKGSDLVVAE----GDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + PG I + Y V+T F + A P+ Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDREKAAPY---DPPSADTLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V +P D F+ + P G + A +L F E VY Y E+RD PA + TS+LS Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + R+ ++R + + + ++L WREFY ++ +P V Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + IEW D LLQAWK G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G E+F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+ +DP +I+ Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408 Query: 427 HWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL + + IH + S + + YP P+VDH + L + A+ Sbjct: 409 EYVPELRDAAPEIIHDWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462 >gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 499 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 118/482 (24%), Positives = 198/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + V ++ + + N + + ++ Sbjct: 59 NTELTKLGQSLII----MVGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ K + K + + L++A + + P Sbjct: 115 K----QNNITWHQPYQNGVVRCLADRDKWALLWHKRMSEKLIKAPTELKFICENQTKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 + + G AL IL F E+ Y ++ P S+LS Sbjct: 171 AENLGLEY-----DNSYKRQKGGRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWRI Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRITSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR W+PEL NV + IH P ++YP PIVD K+A + Y +K Sbjct: 404 PNGEFIRRWVPELENVTDENIHTPWLEKHNA---VDYPDPIVDEKQARKFAADNVYKIRK 460 Query: 480 QS 481 S Sbjct: 461 NS 462 >gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a] gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme) [Frankia alni ACN14a] Length = 451 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 148/475 (31%), Positives = 223/475 (46%), Gaps = 26/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + WLR DLR++D+ AL AA +D V+ +F+ + + F+Y L Sbjct: 1 MTVSVCWLRRDLRLSDSPALCAAVDGADD-VLVLFVLDDAL--RRPAGPVRLAFLYRCLR 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G + D ++ + ++ + Y RRD +E+ Sbjct: 58 ELDDRL---GGRLCVRR----GDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + PG + ++V+TPF +A ++ + + L Sbjct: 111 LRAGGRELVRTGSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWRRPVAEPVGARWALL 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + GE+ A L +F + Y E+RD+P TS+L Sbjct: 171 AS------DGIPADPDLGGTRLPAAGERAARERLAEFLAGSLTGYAERRDVPGQDTTSRL 224 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G + PR L A + +EL WREFY ++A P+ Sbjct: 225 SPYLKYGCIHPRTVLAELDRATS------PRDAEKFRSELAWREFYAEVLAANPASARAD 278 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ +AWK G TGFPI+DA MRQL GW+ NR+RMI ASF+ KDL Sbjct: 279 LTGALADM-AYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKDL 337 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V W G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNP QG R+DP GT++ Sbjct: 338 HVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTYV 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R W+P+L +VP +H P + YP P+VDH +L +Y AA+++ Sbjct: 398 RRWIPQLRDVPAAKVHEPWTLPGGPPAG--YPAPVVDHATERRESLARYEAARRR 450 >gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88] gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger] Length = 584 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 160/486 (32%), Positives = 250/486 (51%), Gaps = 19/486 (3%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+ L A ++ ++I +PE H SA + + +L Sbjct: 95 VHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLEL 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ LS+ I +D + + C + T LF N +YE++E+RR+ L + Sbjct: 155 LRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVRLC 214 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ + ++ D+ ++ PG +++ + Y VY+P+ +A L + Sbjct: 215 ARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEPGSNP 274 Query: 187 PVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F ++P GE AL L F +EK Y + Sbjct: 275 GDARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALRRLEAFLEEKANDYDD 334 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ A + TS LSPY + G LS R + +++ L + ++G SW++E+ WR+FY+ Sbjct: 335 LRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEVAWRDFYK 394 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P + W+ + AW +G TG+PI+DAAMRQ+ WMHNR Sbjct: 395 HVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKHAAWMHNR 454 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RM+ +SFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 455 TRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 514 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP+G +IR W+PEL + +H P+ + N YP PIVDH ++ L Sbjct: 515 RQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHSESRDRAL 574 Query: 472 NQYYAA 477 Y Sbjct: 575 ENYKKV 580 >gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii SH145] Length = 469 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 180/475 (37%), Positives = 267/475 (56%), Gaps = 12/475 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+W R DLRI D+ AL+ A IAV + +PEQW+ H + + F L + Sbjct: 1 MQLIWFRQDLRIHDHAALWHATQQ--GSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L+Q I + D + S C + ++ L N + +NE++RD +++ L+ Sbjct: 59 KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAI 182 + I P SI N + Q Y++Y+ F+K + L+Q P Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQNIPGCYPDIQAQDPVE 178 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + +Y ++P + AL +L F ++K+ +Y +R++PA+ GT Sbjct: 179 LPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPAVDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+IG+LS RQC L ++ + G +WL+EL+WREFY H + +P V Sbjct: 239 SRLSPYLNIGILSIRQCMQTLFKDSYFQIDDI--GQQTWLDELLWREFYLHTLFDFPRVS 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +PF T+ I+W L AW+QG TG PI+DA MRQ+ GWMHNR+RMITA FL Sbjct: 297 RHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMITAMFLC 356 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR+GE +FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FDP G Sbjct: 357 KNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQKFDPNG 416 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ + IH P++ DL+L+YP PIVD K + + + Sbjct: 417 DYIRQWVPELTHLNAKSIHEPYA--KNPDLALDYPKPIVDLKASRVRAIEAFKQI 469 >gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str. B100] gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris] Length = 520 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 224/484 (46%), Gaps = 15/484 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I P + Q A + Sbjct: 44 RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWR 102 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + SL +G Q DS + LD+ Q +++NR+YE RD Sbjct: 103 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 158 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ L+ R +S + ++L P ++ YKV+TPF + + L D P Sbjct: 159 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRS 218 Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + ++ Q + GE A +L F + Y E RD Sbjct: 219 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 278 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P GTSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ Sbjct: 279 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQRSARNGADIDG---YIRQLGWRDFAYHLLH 335 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + D L AW++G TG PI+DA +RQL GWMHNR+RMI Sbjct: 336 HFPDTTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMI 395 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q + Sbjct: 396 VASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 455 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQY 474 +FDPQ T+I W+PEL +P + AP L+ YP PI+ + L Y Sbjct: 456 KFDPQATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAY 515 Query: 475 YAAK 478 + Sbjct: 516 AGTR 519 >gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 471 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 199/474 (41%), Positives = 266/474 (56%), Gaps = 10/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR D+ AL AA V+A F++TPEQWR+H +S Q+ I L+ +++ Sbjct: 3 LVWFRRDLRTLDHTALKAALETGQ-PVVAGFVSTPEQWREHNMSPMQADLIARRLVLLEE 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I Y + F D + + + + V + N YE+NE D+ + L Sbjct: 62 ELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLNES 121 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 I + P ++LN + +KV+TPF++A + V + L Sbjct: 122 SITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWKPEPQAALSKEVLQ 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + L LR F +E+ Y +RD PA+ GTSQL Sbjct: 182 AVKADRYHVDVSFSYPRESSERWHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGTSQL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+IG LSPRQC RL E G +WL+E+IWREFY+HL+ F P + G+ Sbjct: 242 SPYLAIGALSPRQCIARLHAENP--HTDLTEGKATWLSEIIWREFYQHLLVFEPKLVKGQ 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 FI W +KIEW+ D + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL KDL Sbjct: 300 GFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D PYFRIFNP QG++FD GTF+ Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHDGTFV 419 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 RHW+PE+ VP ++IH P W N L +Y P+VDHK TL + AK+ Sbjct: 420 RHWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471 >gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 490 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 152/495 (30%), Positives = 224/495 (45%), Gaps = 28/495 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIA--------TPEQWRQHGISAR 56 M+ +VW R DLR+ D+ AL AA +I V+I T + + A Sbjct: 1 MTT-IVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAA 59 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + + SL + + L+ G Q + + L + + ++ +NR+ E Sbjct: 60 ARWWRHHSLRSLAERLASCGSRLIIRQ----GEPLAELQRLIHETKANRVVWNRRMEPAA 115 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 D ++ L+ I + P +I N + +KV+TP+ KA++ + Sbjct: 116 RAEDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTY 175 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVE 232 P + + I P A D F Q ++ + Y E Sbjct: 176 PEPDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLPLIDEYAE 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ G S+LS +L G +SPRQ L + + G ++ EL WREF Sbjct: 236 ARNHLIGTGVSKLSAHLHFGEISPRQIVRYLLD--TRGSVLEPRGIEHFVRELGWREFGA 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +L YP + P +W L+AW++G TG P++DAAMR L GWMHNR Sbjct: 294 YLAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI ASFL K+LL+DWR G +FM L+D D SN GWQW A TG D+ PYFRIFNP Sbjct: 353 ARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPV 412 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 +Q ++FDP GTFIR W+PEL + +Y+ AP + + L YP PI D K + Sbjct: 413 LQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVS 472 Query: 467 CHHTLNQYYAAKKQS 481 L + K+ + Sbjct: 473 RQRALVHFDQIKQNT 487 >gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95] Length = 462 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 142/469 (30%), Positives = 219/469 (46%), Gaps = 24/469 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66 + L R DLR+ DN +L A + + +VI FI Q + + S F+ A L Sbjct: 16 KIGLHIFRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLK 74 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L Q + + + ++S + +F N+ Y +RD ++ Sbjct: 75 ELNDQLHQLNARLYFFEGLT----AKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAI 130 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + VLL + + M + + + + + Sbjct: 131 CERERVDFKEHFDVLLHEPTEVLKDNGMPYIKFTDFLKKSKKIDVREPQKNKFKNYFTEE 190 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + K+ Y E R+ P+I GT++LS Sbjct: 191 ISSSIALQVDKFPQNENLILKG----GRKEGLSYIERIVKLKNYSETRNTPSIDGTTKLS 246 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S R+ + ++ E F + + +L WR+F+ H++ +P V G Sbjct: 247 PHLKFGTVSVREVYGKVNENFGNE--------HEIITQLHWRDFFTHILYHFPHVL-GNS 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F +I+W D +AW G TG+PI+DA MRQLN GWMHNR+RMIT SFLVKDL Sbjct: 298 FKEKYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDLH 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+ +I+ Sbjct: 358 IDWRWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIK 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 WLPEL N+ + IH ++YP PIVDHK A Y Sbjct: 418 TWLPELTNLNLEQIHT-----LNIPKDIDYPTPIVDHKVASEKAKKLYK 461 >gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121] gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121] Length = 475 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 137/483 (28%), Positives = 224/483 (46%), Gaps = 23/483 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR++DN AL AA D V+ ++I + + + +++ SL Sbjct: 4 PLVIHWFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL+ ++ + +E L + VT + +NR YE ++RD+ +++ L Sbjct: 62 LDASLTA---CLNLYK----GEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTL 114 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181 + I ++ L P I YKV+TPF + Sbjct: 115 KEIGIQVQSYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEMPRQPLPRPDNQAVYL 174 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 G + ++ IGE A KF +E + Y E R+IP+ Sbjct: 175 KDDKGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKPF 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 ++LSP++ G +SP Q W ++ + + E + + + + Sbjct: 235 VTRLSPHIHFGEISPNQLWYGVQSVADNEHVDHFCS-ELGWREFSYSQLFVNPSL-PTHN 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + + + LL+AW+QG TG P++DA MR+L G+MHNR+RMI ASFL Sbjct: 293 LQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRMIVASFL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK+L + W GE +F LLD DLA+N+ WQW A G D+ PYFRIFNP +QG+RFD + Sbjct: 353 VKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQGQRFDAE 412 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G +I+ ++PE++ +P +Y+ +P + L YP PI+D K + L + Sbjct: 413 GDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREAALEAFK 472 Query: 476 AAK 478 + K Sbjct: 473 SLK 475 >gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 771 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 167/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+AL A + + ++ ++I +P+ H S + F +L Sbjct: 278 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 337 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 338 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 397 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q +L V Sbjct: 398 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 457 Query: 187 PVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + + Q + M+P GEQ A L +F +V Y Sbjct: 458 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 517 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 ++R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY Sbjct: 518 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 577 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HN Sbjct: 578 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 637 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 638 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 697 Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469 +Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + Sbjct: 698 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 757 Query: 470 TLNQYYA 476 L +Y Sbjct: 758 ALKRYKE 764 >gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32] gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens CN-32] Length = 493 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%) Query: 4 TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55 M+ L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Sbjct: 5 KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAP 64 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 Q FI + + K L GI F+ Q F D +++ YC Q +T++F + EIN Sbjct: 65 IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E RD+ V D+ LL PG++LN + +MY+V+TPF + + + + Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L VPA P + + + + GE A +L F ++KV Y + RD Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA+ GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM Sbjct: 299 VAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468 ++FDP G+FIR +LPEL + + +H P++ YP IVDH +A Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478 Query: 469 HTLNQYYAAKKQSLL 483 L+ KK S L Sbjct: 479 RALSVLGVLKKASAL 493 >gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1] gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1] Length = 493 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%) Query: 4 TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55 M+ L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Sbjct: 5 KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAP 64 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 Q FI + + K L GI F+ Q F D +++ YC Q +T++F + EIN Sbjct: 65 IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E RD+ V D+ LL PG++LN + +MY+V+TPF + + + + Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L VPA P + + + + GE A +L F ++KV Y + RD Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA+ GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM Sbjct: 299 VAFPDLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468 ++FDP G+FIR +LPEL + + +H P++ YP IVDH +A Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478 Query: 469 HTLNQYYAAKKQSLL 483 L+ KK S L Sbjct: 479 RALSVLGVLKKASAL 493 >gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262] gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262] Length = 467 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 176/481 (36%), Positives = 248/481 (51%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D +I +F PEQ+ + S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ Q F + IE L + K+F+NR RD+ Sbjct: 57 QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + A + YK++TP+ K + + + L+ P Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ +F + P F GE+ A L F KE + Y + RD+PA+ TS LS Sbjct: 172 SLFPNYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD-FYNMIYVSFPKQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + + W+ G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y +K+ Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24] Length = 474 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 145/485 (29%), Positives = 220/485 (45%), Gaps = 22/485 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VWLR+DLR+ DN AL A + V+I E + +++ SL+ Sbjct: 1 MPSTIVWLRDDLRLDDNPALADAAAMGH-PLTVVYILDEESPGVRPLGGAAKWWLHHSLV 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G + S + + T L +NR+Y E D ++ Sbjct: 60 SLAGGLEAAGSRLVLRRGSAAG----IIQELAAETGATHLRWNRRYGGPERSIDAGVKAW 115 Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQ----------ADLR 175 + + + + + P ++ A YKV+TPF +A +++ Sbjct: 116 AGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPA 175 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + + + GE A L+ F V Y RD Sbjct: 176 GHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRD 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P ++GTS+LSP+L G +SP + W+ L+E F + + +EL WREF L+ Sbjct: 236 RPGVEGTSRLSPHLRFGEISPFRIWHALRERFPRQA---PADVGIFRSELGWREFCWQLL 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + L+AW+QG TG+P++DA MRQL GWMHNR+RM Sbjct: 293 YENPELASRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 352 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFLVK+LL DWR+GE +F L+D D ASN WQW A +G D+ PYFRIFNP Q Sbjct: 353 AAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQS 412 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 K+FD G ++R ++PE+ N+ + IH P + L+ YP P+V ++ L Y Sbjct: 413 KKFDAAGRYLREFIPEIANLSEKEIHEPWKAPE---LAAGYPEPLVGLPESRERALETYQ 469 Query: 476 AAKKQ 480 K Sbjct: 470 KLKDS 474 >gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens] gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens] gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens] Length = 727 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 138/495 (27%), Positives = 223/495 (45%), Gaps = 34/495 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL Sbjct: 3 ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ SL + G + D++ L T++FYN Y+ + RD +++ L Sbjct: 61 LELSLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGL 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R I + L P + + Q + VY F K + + + +P RLTG Sbjct: 118 SQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPL--LPPRRLTG 175 Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR--- 234 P+ + + + + G A L F + + Y R Sbjct: 176 PIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKA 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 D + TS LSP+L G LS R+ ++ +++ + ++ +L L +RE+ Sbjct: 236 DGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + + W D +AW+QG TG+P++DA MR+L GW H Sbjct: 296 SRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI N Sbjct: 355 NRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIEN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P ++G RFDP G ++R W+PEL +P +++H P +L NYP PIV+ Sbjct: 415 PEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIG 474 Query: 465 KACHH---TLNQYYA 476 A +L + + Sbjct: 475 AARERLQASLAEMWE 489 >gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 246/480 (51%), Gaps = 19/480 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+TDN AL A VIAV++ PE+ Q+ A +++ SL + Sbjct: 6 LVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALGP 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 +L+Q GI + ++ L + +++NR YE + V RD+ +++ L+ Sbjct: 65 ALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + C+SF ++L P ++ N A + Y+ +TPF +A + A P R V Sbjct: 121 GLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVE 180 Query: 190 PSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P D + GE AL L F +++ Y + RD PA GTS L Sbjct: 181 GLDLAALGLLPRTPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGTSGL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP L G LSPRQ W ++ + P+ ++L+EL WREF HL+ +P + Sbjct: 241 SPALHFGELSPRQVWWQVMAAREAGV--PEDACETFLSELGWREFAHHLLWSHPDLGDAP 298 Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + AW+ G TG P++DA M +L GWMHNR+RM+T SFLVK Sbjct: 299 VDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLVKH 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ GE +F L+D D ASN GWQW A G D+ PYFRIFNP QG+RFDPQG + Sbjct: 359 LRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQGRY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R WLP L N+P +YIHAP + + L +YP P++D + L+ + A K Sbjct: 419 VRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQALSAFQAIK 478 >gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200] Length = 493 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 21/495 (4%) Query: 4 TTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISA 55 M+ L+W R DLR+ DN+AL AAC + A+ + A++IATP QW H ++ Sbjct: 5 KEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAP 64 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 Q FI + + K L GI F+ Q F D +++ YC Q +T++F + EIN Sbjct: 65 IQLDFIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEIN 124 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E RD+ V D+ LL PG++LN + +MY+V+TPF + + + + Sbjct: 125 ERVRDQACIDA---GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAIL 181 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 L VPA P + + + + GE A +L F ++KV Y + RD Sbjct: 182 PLGVPAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA+ GTS +SPYL+IGVLS RQC L + F ++++ S +WLNEL+WREFYRHL+ Sbjct: 239 FPALDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + F ++++W + +AW +G TG+PI+DAAMRQLN GWMHNRLRM Sbjct: 299 VAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K LL+DWR GE YF +L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q Sbjct: 359 VVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQS 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-------NYPLPIVDHKKACH 468 ++FDP G+FIR +LPEL + + +H P++ YP IVDH +A Sbjct: 419 EKFDPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARV 478 Query: 469 HTLNQYYAAKKQSLL 483 L+ KK S L Sbjct: 479 RALSVLGVLKKASAL 493 >gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126] Length = 433 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 160/472 (33%), Positives = 228/472 (48%), Gaps = 47/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 + + W R DLR+ DN ALY A + V+ +FI E S + +FI+ L Sbjct: 3 KISIFWFRRDLRLYDNTALYYAIQE-NIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLT 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G E S + + +F NR YE + RD+ ++ Sbjct: 62 EINDQLKKIGSGVLIKH----GKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNI 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ + I F D V+ IL + YKV+TPF+ ++ L + + Sbjct: 118 LQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAEN 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP + F+ D P +++ + + Y ++RD PA GTS+L Sbjct: 178 FFQFEPEIPTLDEIGFRESDVPIP---------KKEYEESTIQKYDQERDFPAKNGTSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G +S R+ ++ +WLNELIWR+FY ++A +P V Sbjct: 229 GIHLRFGTISIREAVAHAQKLN-----------DTWLNELIWRDFYSMILANFPHVVK-N 276 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I W Q W G TG+PI+DA MR+LN G+MHNR+RMI ASFL K L Sbjct: 277 AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKHL 336 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD +LASNNGGWQWAA TG D+ PYFRIFNP Q +FD +I Sbjct: 337 LIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAYI 396 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PE+N + +YP P+VDHKKA L+ Y +A Sbjct: 397 KKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429 >gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940] Length = 470 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 230/475 (48%), Gaps = 13/475 (2%) Query: 9 VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN+AL +D +V+ VF+ P + + ++ Sbjct: 1 MRIHWHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVLE--HAGPARVVALLDAVAA 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++ ++G D + L + + +NR+Y RD + L Sbjct: 59 LREAYRERGSDLVL----ASGDPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRASL 114 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + + PG+I + Y+V+T F + A + ++ Sbjct: 115 DDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPIAPPDADSLGDVT 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 TP D + + + A L FC +Y Y ++RD PA TS+LS Sbjct: 175 DDTPVPTWADLDV-EEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTSRLS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G + R + + ++ + ++L WREFY ++ F PSV Sbjct: 234 HHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVVTEN 293 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + IEW D LQAWK G TG+PI+DA MRQL T +MHNR+RMI ASFL KDL Sbjct: 294 -FKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLTKDL 352 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 353 LIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAAYI 412 Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL+ VP IH+ H + + +YP PIVDH L + A+ Sbjct: 413 REYVPELDGVPADVIHSWHELDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467 >gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens] Length = 727 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 138/495 (27%), Positives = 222/495 (44%), Gaps = 34/495 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL Sbjct: 3 ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ SL + G + D + L T++FYN Y+ + RD +++ L Sbjct: 61 LELSLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGL 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R I + L P + + Q + VY F K + + + +P RLTG Sbjct: 118 SQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPL--LPPRRLTG 175 Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR--- 234 P+ + + + + G A L F + + Y R Sbjct: 176 PIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKA 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 D + TS LSP+L G LS R+ ++ +++ + ++ +L L +RE+ Sbjct: 236 DGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R+L +P + + + W D +AW+QG TG+P++DA MR+L GW H Sbjct: 296 SRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R++ ASF VK L + WR G +YF LLD DL + GWQ+ + + D RI N Sbjct: 355 NRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIEN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P ++G RFDP G ++R W+PEL +P +++H P +L NYP PIV+ Sbjct: 415 PEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIG 474 Query: 465 KACHH---TLNQYYA 476 A +L + + Sbjct: 475 AARERLQASLAEMWE 489 >gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42] Length = 488 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 165/486 (33%), Positives = 238/486 (48%), Gaps = 31/486 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68 LVWLR DLR D+ ALY A + +V VF+ + R+ FI+AS+ + Sbjct: 5 ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTRCDRRVEFIHASVCAL 63 Query: 69 QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L G + +++ + V ++ NR YE + RD+ Sbjct: 64 DEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDYEPAALARDR 119 Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175 + L I S +L G +LN Q Y V+TP+++ +Q L + Sbjct: 120 RVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDAFQTKPYPVE 179 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + P D P+G + A +L+ F Y + RD Sbjct: 180 RHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLPRMAAYKL-ARD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P +G S LS +L G +S RQ + + GA +WL+EL WR+FY ++ Sbjct: 239 FPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQG----CQGAQTWLSELAWRDFYFMIL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P V + F P ++++W+ QAW TG+P++DAAMRQL G+MHNRLRM Sbjct: 295 WHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 354 VVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 ++FDP G FIR +LPEL VP +++H P L ++YPLP+VDH A Sbjct: 414 QKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPVVDHASARER 473 Query: 470 TLNQYY 475 TL +++ Sbjct: 474 TLMRFH 479 >gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens] Length = 513 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 154/498 (30%), Positives = 231/498 (46%), Gaps = 25/498 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 +++ + LVWLR DLR+ DN AL+ A ++I V+I + + ++ Sbjct: 1 MSSSKIPCTLVWLRRDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGKRRTGQACLWWL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 Y SL ++ LSQ I D+ L + +++NR YE E RD Sbjct: 59 YHSLKSLRNQLSQWNIPLIVKSGK---DAFTILKKLLDRYNADAIYWNRCYEPFEYNRDY 115 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +EKR R I + P + N Q ++++ + + P Sbjct: 116 SIEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLPQPRKPYDKPKF 175 Query: 181 AIRLTGPVTPSNIPRFFDY---------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + G V + + GE+ A+ L++F K + Y Sbjct: 176 TVHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYS 235 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWR 288 E+RD + TS LSPYL G +SP W+ ++ + P +L EL WR Sbjct: 236 EKRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKRYLTELGWR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF HL+ YP + K F +++ D L AW+ G TG+PI+DA MRQL+ G+ Sbjct: 296 EFTCHLLFHYPDLPE-KSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGF 354 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR+RMI ASFL+ LL+ W+ GEE+F ++L+D DLA + WQW A G D PYFR+ Sbjct: 355 MPNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRM 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 FNP IQG++FD +G ++R W+PE+ +P Y+ P L YP PIV+ Sbjct: 415 FNPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVE 474 Query: 463 HKKACHHTLNQYYAAKKQ 480 HK A L Y K++ Sbjct: 475 HKVARELALATYSQLKRK 492 >gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 514 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 150/515 (29%), Positives = 217/515 (42%), Gaps = 52/515 (10%) Query: 9 VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + L W R DLR+ DN L AA + VF+ P+ S + + L Sbjct: 1 MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLD--HASDVRVRRLLDGL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +G + L ++ +NR Y RD + Sbjct: 59 AALRDDYRDRGSDLLVAR----GAPETVLPELAAALDAERVVWNRDYSGLARERDAGVRT 114 Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I + +L P SI +A Y VY+ + K + + + Sbjct: 115 ALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDLVD 174 Query: 185 TGPVTP----------------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 G +T + + P G + A L F Sbjct: 175 AGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRLDDF 234 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--------- 273 E V+ Y +RD PA + TS++S +L G + R+ + K+ K Sbjct: 235 LSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDEGGD 294 Query: 274 --------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 P + + +L WREFY ++ P V + + E I W D + A Sbjct: 295 HEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVTEN-YKEYEEGIAWRDDPDEIAA 353 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 WK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDLL DWR G +YF L D D Sbjct: 354 WKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLADHDT 413 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+++GGWQWAASTG D+ PYFRIFNP QG+R+DP +I+ ++PEL + IH H Sbjct: 414 ANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHEWHE 473 Query: 446 WL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + + + NYP PIVDH + L Y A+ Sbjct: 474 LSPTQRANAAPNYPAPIVDHSERREEALAMYKRAR 508 >gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 487 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 166/486 (34%), Positives = 241/486 (49%), Gaps = 29/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S LVWLR DLR D+ ALY A +V F+ + R+ FI+ASLL Sbjct: 3 STALVWLRRDLRCDDHAALYHALRRYP-RVYCAFVFDTGILDELPSRQDRRVEFIHASLL 61 Query: 67 QVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 ++ + L Q G ++E + + V ++ NR YE + R Sbjct: 62 ELHQGLQQLAARSGAPGGGLIVRHGP----ALECIVQLAQELGVQEVLANRDYEPQAIAR 117 Query: 120 DKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL- 177 D+ + + L I S +L +L + Y V+TP+++A +Q L L+ Sbjct: 118 DQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPYP 177 Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + + + + L + ++ Y E R Sbjct: 178 VDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPLPSGMSGAQRLLQDFVPRMAAYQEAR 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P +G S LS +L G +S R +L + GA +WL+EL WR+FY + Sbjct: 238 DYPGRKGVSYLSVHLRFGTVSIR----QLAALAAKQAAEGCGGAQTWLSELAWRDFYFMI 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P V + F P ++++W++ L QAW + TG+P++DAAM QL G+MHNRLR Sbjct: 294 LWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHNRLR 352 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ PYFRIFNP Q Sbjct: 353 MVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPITQ 412 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468 +RFDP GTFIR +LPEL VP +IH P + L ++YP+P+VDH +A Sbjct: 413 SQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHARARQ 472 Query: 469 HTLNQY 474 TL ++ Sbjct: 473 RTLMRF 478 >gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548] Length = 499 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 116/482 (24%), Positives = 204/482 (42%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ N++ N + + ++ Sbjct: 59 NTELTKLGQSLTI----MLGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ K + + + + +++A + + ++ P Sbjct: 115 K----QNNIAWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P SL+YP PI+D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 522 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 108/482 (22%), Positives = 182/482 (37%), Gaps = 27/482 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLRI D+ L AA +A +I ++I PE W+Q S R HFI+ L + Sbjct: 18 IVWFKRDLRINDHAPLLAASRT-NAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCDLDS 76 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G DS + + L V+ ++ + + + ++L Sbjct: 77 GLAELGQHLVV----KVGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQKLCQN 132 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 P ++ + + ++ P Sbjct: 133 H----GIALHEAPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNALNSFPPCSSDTLPDK 188 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPY 248 ++ + I + G + A+ LR F + Y+ P S+LS + Sbjct: 189 ND----PIFGNVPIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAH 244 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMG 304 L+ G LS R+ + + L ++ + L WR + + P + Sbjct: 245 LAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH 304 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + QAW G TG+P +DA MR L GW+ R+R + SF Sbjct: 305 CMHPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQ 364 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+ E+ D + + Q +G + R++NP Q DP+GTF Sbjct: 365 LWLDWRVTGEHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTF 422 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL +VP ++IH P W L +YP P+VD + Q A + Sbjct: 423 IRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIR 482 Query: 479 KQ 480 + Sbjct: 483 QN 484 >gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 464 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 182/471 (38%), Positives = 272/471 (57%), Gaps = 10/471 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W R DLR+ N+AL A +N I F +QW QH + Q + + Sbjct: 1 MNT-LFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVS 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L++ GI + F D L +C Q + + N++YE+NE RDK ++ + Sbjct: 58 YIREKLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQ 117 Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + ++ ++ P GS+ +MYKV+TPF++A ++ + P Sbjct: 118 CDQQQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPL---- 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P +I +P+ + ++ F +K+ Y + RDIP+++GTS L Sbjct: 174 -SSNPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++GV+S +Q +++++ D+L KS F+W+NELIWREFY+HL+A +P + G Sbjct: 233 SPYLALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGA 292 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + + W + + W +G TG+P++DAAM+QL GWMHNRLRM+ ASFL K L Sbjct: 293 NFNEKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHL 352 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE++FM L+DGDLASNNGGWQWAASTG D+ PYFR+FNP Q +RFDP G FI Sbjct: 353 LIDWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFI 412 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 R +LPEL VP ++IH PH++L S + Y IVDHK A L+ + Sbjct: 413 RKYLPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAFK 463 >gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans DS-1] Length = 475 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 157/484 (32%), Positives = 238/484 (49%), Gaps = 22/484 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR+ A + VI +FI P A +++ SL Sbjct: 4 SPAILWFRRDLRLD--ANPALAAAMARGPVIPLFILDP----ADRPGAASRWWLHGSLEA 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL++ G + E L + + +F+NR YE + + RDK L+ L Sbjct: 58 LGESLARLGAPLILRR----GSPSEILPALTAETDARAIFWNRLYEPHLIGRDKALKSAL 113 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183 + I + L P + + YKV+TPF ++L Q A + + Sbjct: 114 TAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFPAPHPAPKKCAGLSPL 173 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + ++ + + GE+ A L F + + Y E RDIPA +GTS Sbjct: 174 PSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDIPAAEGTS 233 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SP + W+ ++ ++G ++L EL WR+F HL+ +P + Sbjct: 234 RLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAG-RAFLRELAWRDFAHHLLFHWPDIAR 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W +D+ AW +G TG+PI+DA MRQL GWMHNR+RMI ASFLVK Sbjct: 293 ENW-KSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMIAASFLVK 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+VDWR G E+F + L+D DLA N WQW A +G D+ PYFRIFNP +QG++FD G Sbjct: 352 HLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGEKFDGDGA 411 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++R ++PEL + ++IH P + D L YP P+VDH A L Y Sbjct: 412 YVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARALAAYEQI 471 Query: 478 KKQS 481 + +S Sbjct: 472 RNES 475 >gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4] Length = 466 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 154/482 (31%), Positives = 225/482 (46%), Gaps = 24/482 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + ++W R DLR++D+ AL AA D +V+ VF+ P + + ++ + AS+ Sbjct: 1 MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSR---AGARADRMAASIA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + G D + ++ +R+ RRD + Sbjct: 57 ALS---GDIGGALVVRT----GDPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + PG +LN + + Y+V+TPF +A ++ R Sbjct: 110 LEADGRRLVETGSPYAVGPGRVLNGSGRPYQVFTPFSRAWREHGWPEPGRRPRDDPWAAM 169 Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + GE AL R F ++ + +Y +QRD P + Sbjct: 170 PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALARWRAFLEDDLEHYGQQRDRPDLDT 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L G + PR L GA ++ EL WREFY ++ P Sbjct: 230 TSRLSAPLKYGEIHPRTILADLAAHPAADGE----GARRFVTELAWREFYADVLWHQPRS 285 Query: 302 CMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + L++AW++G TGFP +DA MRQL GWMHNR+RM+TAS Sbjct: 286 AWRDLRDALSGMPYDRGPEVNDLVEAWRRGRTGFPFVDAGMRQLVAQGWMHNRVRMVTAS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDL V W +G +F+ LLDGDLASNN GWQW A TG D+ P+FR+FNP QG+RFD Sbjct: 346 FLVKDLHVWWPVGARHFLDHLLDGDLASNNHGWQWVAGTGTDASPFFRVFNPVTQGQRFD 405 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G +IR W+PEL ++P H P W D +D YP IVDH + L +Y + Sbjct: 406 PDGDYIRRWVPELRHLPGAAAHEPWLWPDGHDHG--YPERIVDHAEERLEALRRYDVVRN 463 Query: 480 QS 481 S Sbjct: 464 GS 465 >gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 528 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 101/485 (20%), Positives = 190/485 (39%), Gaps = 27/485 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VW + DLRI D+ L AA S ++ +++ P+ W++ S R HFI+ L Sbjct: 23 TINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIHDCLTD 81 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++S G D +++ V ++ + + + + +++ Sbjct: 82 LNTAVSSLGQPLVI----KVGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRDINVRKI 137 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + P ++ K +++ + + P+ Sbjct: 138 CE----LNNIPIHEYPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQRYISDKL 193 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQL 245 + + + + + G A+ LR F + Y+ P + S+L Sbjct: 194 PPKDD----PMFGEEFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSAVYCSRL 249 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S +L+ G LS R+ +K+ L + ++ + L WR + + PS+ Sbjct: 250 SAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKIEDQPSI 309 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E + + QAW G+TG+P IDA MR L GW+ R+R + SF Sbjct: 310 ETHCMHPAFEGLRENDHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMRAMLVSFA 369 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L +DWR+ ++ D + + Q +G + R++NP Q DP Sbjct: 370 SYQLWLDWRVIGDHLARLFTDFEPGIHYS--QLQMQSGVTGINAMRVYNPVKQSIEHDPN 427 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G +IR W+PEL ++P ++IH P +W L Y PIVD+ A + Sbjct: 428 GDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAAKDAKEKLA 487 Query: 476 AAKKQ 480 +K Sbjct: 488 EIQKS 492 >gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis ATCC 25486] Length = 457 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 224/475 (47%), Gaps = 24/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + + + ++ RR++LL Sbjct: 60 DLDASLRERGGRLVVRSGP----VAQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTV 115 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ R + ++ PG++ Y V+TP+ + Q ++ R+ + Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPV-- 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTS 243 PVT P I P P G ++A + + Q D A TS Sbjct: 174 --PVTMHGEPLPSRDAVPRISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLAGDMTS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP + + +GA +++ +L WR+F+ +MA P+ + Sbjct: 232 RLSPYLHFGALSPLELVR-------EASAHGGTGAEAFVRQLCWRDFHHQVMAARPASSV 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + AWK+G TGFP++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG YF+ +L+DGD+ +N WQW A TG D+ P+ R+ NP +QGKRFDP+G Sbjct: 345 TLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKRFDPRGE 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +P +H P L+YP P++D + L ++ A+ Sbjct: 404 YVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLIDLAEG----LARFKHAR 454 >gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii DFL-11] Length = 519 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 93/480 (19%), Positives = 166/480 (34%), Gaps = 23/480 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +H+VW + DLR+ D++ L A V+ +++ P+ W Q +SAR F+ L Sbjct: 4 PIHIVWFKKDLRVFDHEPLKRASLQ--GPVLPLYVIEPDLWDQPDMSARHYAFLSECLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS+ G + L + R+ L+ + + + Sbjct: 62 LDQELSRLGKPLLLRT----GSVTDVLTYISERYRIAGLWSHEETGNGWTYQRDKAVAAW 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + + I L L + Sbjct: 118 CRANSVPWTECRQTGVIRRLNSRNGWAGQWDRFMAEQPIDPPALRPLSGLTSGPLPKAAD 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + P + + + + A + S++SP Sbjct: 178 LGLAADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATP-------VKAFEACSRMSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC----- 302 YL+ G +S R+ +L G +W + H + Sbjct: 231 YLTFGTISMREVAQATWARQAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQKLEDEPR 290 Query: 303 --MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + D+ LQAW++G TG P +DA MR L GWM+ R+R + + Sbjct: 291 LEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRMRAMLTAV 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L +DWR + D + + Q +G + RI+NP QGK DP Sbjct: 351 ASYHLWLDWRQPGLHLARLFTDYEPGIHWSQIQ--MQSGTTGINTIRIYNPVKQGKDQDP 408 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 G F++ W+PEL ++ I+ P L YP P+VD+ A ++ +A +K Sbjct: 409 DGIFVKRWVPELKDIDPALINEPWKAENAGKVLGKTYPFPVVDYLSAAKEARDKVWAVRK 468 >gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri ES114] Length = 479 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 203/472 (43%), Positives = 269/472 (56%), Gaps = 11/472 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R+DLR DN AL AA N A+FI + QW++H + Q I L++++ Sbjct: 10 VWFRHDLRTIDNPALQAAVDN-QQPTFALFIYSESQWKKHNKAPIQIDLIKRRLVELKNE 68 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q I F + + + + V LF N++YE +E RD + + L + Sbjct: 69 LEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESLLNTN 128 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT-- 189 C FD +LP G+I+N Q YKV+TPF+KA + Q L P Sbjct: 129 -CYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTGKSVLCDPKLIK 187 Query: 190 --PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 N F + +P+ + + ILR+FC++KV Y RD P IQGTSQLSP Sbjct: 188 KLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSP 247 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+IG +S +QC ++ + G WL+ELIWREFY HL+ FYP++ + F Sbjct: 248 YLAIGAISAKQC---ALRLHLEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAF 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + + IEW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL + Sbjct: 305 LSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHI 364 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+FD TFI+H Sbjct: 365 DWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKH 424 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL + + IH P+ S NYP IVDH + + Y AK+ Sbjct: 425 WLPELKALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 474 >gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3] Length = 470 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 182/474 (38%), Positives = 266/474 (56%), Gaps = 9/474 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++L+ DLR+ DN AL A + ++ AV I + EQW+ H S + F L V Sbjct: 1 MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L Q I ++D L ++ + +VT + N + +NE+ RD ++ L+ Sbjct: 59 ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + D + P GSI N Q Y+V +++A + L + L+ L VP ++ Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178 Query: 188 VTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + YP + +P+GE AL +L KF E + Y +QRD P I TS Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL++G++S RQC + G +WL+EL+WREFY+H++ +P + Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF T + W L AWK G TG PI+DA +RQ+ GWMHNR+RMI A FL K Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP Q ++FD QG Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ + IH P++ +L LNYP PIVD K + L + +A Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA--KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470 >gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum borinquense DSM 11551] gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum borinquense DSM 11551] Length = 469 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 231/475 (48%), Gaps = 17/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W R DLR++DN L A D V+ VF+ + A + F+ +L ++ Sbjct: 1 MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLA--HAGAARVRFMLDALARL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++ + D E L + + +N+ Y RD+ + + L Sbjct: 57 RETYRERDSDLVVVR----GDPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112 Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + PGSI +A Y VYT F K P Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKWRNRNKADPFS---PPEADSLAD 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V+ +++P + F D G + A L FC++ +Y Y RD P TS+LS Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R+ + +E + + ++L WREFY H++ F P V Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVTQN 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W +D L AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDL Sbjct: 290 -YKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G +F + L D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP T+I Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408 Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + ++PEL + IH + ++ ++ YP PIV+H K ++ + AA+ Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463 >gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 483 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 186/481 (38%), Positives = 275/481 (57%), Gaps = 9/481 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR+ DN A + +AV++ +PEQWR H + + F +L + Sbjct: 1 MQLIWLRSDLRLHDNT--ALAAAAAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L++ I +++ + + L C + V + N +Y +NE RRD + + L Sbjct: 59 SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S D +L PGS+L ++V++ FRK L + + PA + Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +P F P +A+ ++P GE A L F + + Y +RD PA GTSQ Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL GV+SPRQC + + +GA +W+NEL+WREFY+H++ YP V Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE + W K L+AWKQ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +FM L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP Q ++FD +G F Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA--AKKQSL 482 I+ WLPELN++ Q +H+P++ +++YP PIVD +++ L + A++ + Sbjct: 419 IKRWLPELNDLDKQQVHSPNTQGGLFG-AVDYPAPIVDLRQSRARALAAFRNLPARQDAT 477 Query: 483 L 483 + Sbjct: 478 V 478 >gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 471 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 220/482 (45%), Gaps = 27/482 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDP----AAETGGASRWWLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFAARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I +++ P I +Y VYTPF +A P Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAG 170 Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + + + + GE A L F + Y QRD+P + G Sbjct: 171 DPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGVAG 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L G ++ W + +L ELIWREF +L+ P + Sbjct: 231 TSGLSPHLHWGEIAIDAVWRAAVAAPGRDAARQT-----FLKELIWREFAAYLLWHTPDL 285 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + W + + L AW+ G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 286 AT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG++FDP Sbjct: 345 VKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R ++PE+ N+P +Y+HAP + L +YP PIVD + L + Sbjct: 405 GAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERALAAFA 464 Query: 476 AA 477 A Sbjct: 465 AI 466 >gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272] Length = 463 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 152/479 (31%), Positives = 224/479 (46%), Gaps = 27/479 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + M ++W R DLR+ DN AL AA V+ + + W G R + F Sbjct: 11 LDRMRIMGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLWG-PGAGVRTACF 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ ++ D + + + + RRD Sbjct: 70 -----ARLLAEFDERIGGLHVVH----GDPVAEVVRVARAVDAGTVHVAAAHTPYGARRD 120 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +E+ L + + + PG + Y+VYTPF +A + +A Sbjct: 121 AAVERALADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWRAP-----A 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PA+R + P P + A + KE+V Y + RD+P + Sbjct: 176 PAVRSVPWLRPGGRTHRIPEVAVPEGVTLPPLGEEAARRRWRDWKEQVTQYDDVRDLPGV 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS++S +L G + PR DL G S++ E+ +REFY ++ P Sbjct: 236 DRTSRMSVHLKWGTIHPRTLLA-------DLDGHDSDGVRSYVREIAFREFYADVLHHRP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 G + P ++E+++ L AW+ G TG+PI+DA MRQL GWMHNR+RMI AS Sbjct: 289 DSAHG-YYNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVAS 347 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDL V+W G +FM +L DGDLASN GWQW A G D+ PY+R+FNPT QGK+FD Sbjct: 348 FLVKDLHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFD 407 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P GT++R W+PEL +VP +++H P + D YP PIVDH + L +Y A + Sbjct: 408 PDGTYVRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463 >gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023] Length = 467 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 175/481 (36%), Positives = 247/481 (51%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY A D +I +F PEQ+ + S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ Q F + IE L + K+F+NR RD+ + Sbjct: 57 QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I L + A + YK++TP+ K + + + L+ P Sbjct: 112 ADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P F GE+ A L F KE + Y + RD+PA+ TS LS Sbjct: 172 SLFPKYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD-FYNMIYVSFPKQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + + W++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P + L +YPLPI+DHK+ + +Y +K+ Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 528 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 103/470 (21%), Positives = 171/470 (36%), Gaps = 17/470 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W + DLR+ D+ AL A +I ++I PE W + S RQ FI L ++ Sbjct: 38 ILWFKRDLRVQDHPALSHAARL--GPIIPLYIVEPEAWAEPDASERQYAFICECLESLRS 95 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G+ D++ L++ Q V L + + Sbjct: 96 DLAALGLSLVLR----VGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVA----- 146 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + P S + L + R +++ V ++ A+ +P Sbjct: 147 EWARGQGVRWHEMPQSGVVRRLSSRDAWQGARDRVMRAPVLGAVQGARGAAVASDDLPSP 206 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + P + G + + Y + + S++SP+L+ Sbjct: 207 EALGLMEACPLRQKGGR---GAGVRALTSFVSTRGESYQRAMSSPLHGARACSRISPHLA 263 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LS R+ S+ L WR+ + + P + + Sbjct: 264 FGTLSLREAVQAGAAAPTGRGPDWARSMRSFQARLAWRDHFMQKLEDEPEIERRCLHPAY 323 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 D+ L AW +G TG P +DA MR L GW++ R+R + + L +DWR Sbjct: 324 EGLRPRVADAVRLAAWSKGETGLPFVDACMRSLRATGWLNFRMRSMLMAVASYHLWLDWR 383 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 D + + Q +G + RI+NP QG DP G F R WLP Sbjct: 384 STGPVLARAFTDYEPGIHWP--QVQMQSGTTGMNTIRIYNPVKQGLDQDPSGEFTRRWLP 441 Query: 431 ELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 EL +VP Y+ P +W + L YP PIVD +A +A ++ Sbjct: 442 ELAHVPDAYLQRPWAWSEAEALLGRGYPAPIVDPVEAARVAREAVWACRR 491 >gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 507 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 107/480 (22%), Positives = 176/480 (36%), Gaps = 33/480 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR DN+ L AC + V+ ++I PE WRQ SARQ F SL ++ Sbjct: 9 QLVWFKRDLRTVDNRPLLEACAH--GPVLPLYIVEPEYWRQPDASARQWEFCRESLEHLR 66 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ G +++ L+ + ++ + + Sbjct: 67 RELAALGQPLVVR----CGEAVTVLERARRSLGIAAIWSHEETGNGFTYDRDRAVLAWTR 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + + + P + Sbjct: 123 DRGIPWIQIPQFGVTRGLKRREGWARR--------WEERMAEPLAPEPPKLLPLSDLALG 174 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSP 247 G ++ L L F +V Y P + S+LSP Sbjct: 175 EIPTAEALQLSPDPCPLRQRGGRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRLSP 234 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ G LS R+ G S+ + L W + + P++ F Sbjct: 235 YLTWGCLSMREVVQ-------ASRTLTGRGVSSFGSRLHWHCHFIQKLESEPAIEFHD-F 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P+ I QAWK+G TG P +DA MR L GW++ R+R + SF L + Sbjct: 287 HPFMRGIRPMDS-ERFQAWKEGRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHLWL 345 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR + Q +D + + Q +G+ ++ RI+NP QG+ DP G FIR Sbjct: 346 PWRESGLHLARQFVDYEPGIHWS--QCQMQSGSTAINTIRIYNPVKQGQDHDPNGRFIRE 403 Query: 428 WLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W PEL ++P Y+H P + L ++YP P+VD A ++ + ++ + Sbjct: 404 WCPELASLPNVYLHEPWKLDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRRAA 463 >gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni] Length = 475 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 168/476 (35%), Positives = 247/476 (51%), Gaps = 17/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S +K++ +F P + ++ + ++ L ++++ Sbjct: 6 LFWHRRDLRISDNMGLAAARKQS-SKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S S+ G + + IE + + +VT +F+++ E RD +E+ L + Sbjct: 65 SYSKIGSQLLIVR----GEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183 I + L PP IL + + Y VYTPF K Q ++ L I+ Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180 Query: 184 LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++P D + + + GE A L +F + + Y EQR+ PA++GT Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L GV+ R W E + + +W EL WREFY+H + +P Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQ- 299 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P+ + W+ + QAW +G TG+P++DAAMRQLN GWMHNR RMI ASFL Sbjct: 300 LTVEPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D P RIFNP Q K+FDP+ Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 G +IR WLPEL+++ T+Y+ D +YP PIVDH +Y Sbjct: 419 GEYIRQWLPELSSIDTEYLVR-GKIPDDERERCDYPQPIVDHNLRQREFKRRYKEL 473 >gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces stipitatus ATCC 10500] Length = 593 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 167/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN+AL A + + ++ ++I +P+ H S + F +L Sbjct: 100 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L I + E + C Q + LF N +YE++E+RR+ L + L Sbjct: 160 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 219 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I ++ DS ++ PG++ + + Y VY+P+ +A + L Q +L V Sbjct: 220 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 279 Query: 187 PVTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + + Q + M+P GEQ A L +F +V Y Sbjct: 280 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 339 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 ++R + Q T+ LSPYL+ GVLS R ++ K+ L + SW++E+ WR+FY Sbjct: 340 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 399 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P +CM K F P + W D+ L W +G TG+PI+DAAMRQL W+HN Sbjct: 400 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 459 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI +SFL KDL++DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 460 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 519 Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469 +Q ++FDP G FIR W+PEL+++ ++ IH P+ YP PIV+H + Sbjct: 520 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 579 Query: 470 TLNQYYA 476 L +Y Sbjct: 580 ALKRYKE 586 >gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] Length = 499 Score = 299 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 116/482 (24%), Positives = 200/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + Q + ++ +++ N + + ++ Sbjct: 59 NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ H K + K + + +V+A + + + P Sbjct: 115 K----QNNIVWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ G +S R+ + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G F R WLPEL NV + IH P ++YP PI+D K+A + Y +K Sbjct: 404 PNGEFTRRWLPELENVSNENIHTPWLEKHNA---IDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 699 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 218/488 (44%), Gaps = 24/488 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VWLR DLR+ DN AL AA + V+ VFI +PE+ RQ ++ SL+Q Sbjct: 4 PCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSLIQ 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL G+ + + D++ L T++FYN Y+ + RD +++ L Sbjct: 62 LDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQGL 118 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + L P +LN + + + + + + + D LP + Sbjct: 119 TQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTSIA 178 Query: 187 PVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P+ P + + + G NA L F + Y R Sbjct: 179 GSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKIDG 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSP++ G +S R+ ++ ++ D + + ++ + +RE+ R+L Sbjct: 239 PTTSLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRYLS 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + + W D +AW+QG TG+P++DA MR+L GW+HNR+R+ Sbjct: 299 FNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRV 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ NP +G Sbjct: 358 IVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQTEG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 + DP G ++R WLPEL +PT++IH P +L NYP PIV+ A Sbjct: 418 YKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAARER 477 Query: 470 TLNQYYAA 477 Sbjct: 478 LRQAVAQM 485 >gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY] Length = 488 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 165/486 (33%), Positives = 238/486 (48%), Gaps = 31/486 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68 LVWLR DLR D+ ALY A + +V VF+ + R+ FI+AS+ + Sbjct: 5 ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVEFIHASVCAL 63 Query: 69 QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L G + +++ + V ++ NR YE + RD+ Sbjct: 64 DEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDYEPAALARDR 119 Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175 + L I S +L G +LN Q Y V+TP+++ +Q L + Sbjct: 120 RVADGLAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDAFQTKPYPVE 179 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + D P+G + A +L+ F Y + RD Sbjct: 180 RHAHHLAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPHMAAYKL-ARD 238 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P +G S LS +L G +S RQ + + GA +WL+EL WR+FY ++ Sbjct: 239 FPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQG----CEGAQTWLSELAWRDFYFMIL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P V + F P ++++W+ QAW TG+P++DAAMRQL G+MHNRLRM Sbjct: 295 WHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL KDL +DWR GE +F L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 354 VVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469 ++FDP G FIR +LPEL VP +++H P S L ++YPLP+VDH A Sbjct: 414 QKFDPDGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPVVDHASARER 473 Query: 470 TLNQYY 475 TL +++ Sbjct: 474 TLMRFH 479 >gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida GA99-3549] gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549] Length = 499 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 115/482 (23%), Positives = 205/482 (42%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ N + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ K + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV ++ IH P SL+YP PI+D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSSENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 508 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 147/490 (30%), Positives = 232/490 (47%), Gaps = 24/490 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWLR+DLR+ DN AL+AA + ++ +++ E + +++ SL ++ Sbjct: 24 SIVWLRDDLRVADNPALHAAVERGE-PIVVLYVLDEESDGIRPLGGAARWWLHMSLSRLA 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + G + + + +D + + +NR+Y E+ D ++K L Sbjct: 83 ESLRELGSDLVLRR----GKAADVVDDLVREIGAGAVLWNRRYGGAEIAVDTAIKKDLGD 138 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIR 183 R + L + P ++ N + ++VYTPF KA + + A Sbjct: 139 RGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREEPRKPLPAPKELDAPREAP 198 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE L L F ++ Y QRD PA TS Sbjct: 199 RSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTS 258 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS YL G +SP Q W+R++ + + A +L+EL WREF HL+ P + Sbjct: 259 RLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPDLAT 318 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + L AW++G TG P++DA MR L G +HNR+RM+ ASFL+K Sbjct: 319 RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASFLIK 378 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GE++F L+D D A+N WQW A +G D+ PYFR+FNP +QG++FDP G Sbjct: 379 NLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDPSGE 438 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLPIVDHKKACHHT 470 +IR ++PEL + P +H P + S YP PIVD K++ Sbjct: 439 YIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAYPAPIVDLKESRQRA 498 Query: 471 LNQYYAAKKQ 480 L Y K + Sbjct: 499 LAAYDEIKDR 508 >gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 468 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 189/469 (40%), Positives = 263/469 (56%), Gaps = 7/469 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R+DLRI DN A+++AC + D +A+F E W+ H + + FI+ +L +Q+ Sbjct: 5 IWFRSDLRILDNPAVFSAC-HGDEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L++KGI Q F L S+C + ++ ++ N +Y ++E RRD L + Sbjct: 64 LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123 Query: 132 IC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I S ++L+ PG + YK +TPF + Q L + +++ Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEK----TYSEPLQIKSYSRV 179 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + + GEQ L L +F V Y + RD+PA GTSQLS YL+ Sbjct: 180 TAKGLPECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYLA 239 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+ P+ L + + SGA +WL EL WREFY+HLM F P + G+ F Sbjct: 240 QGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQSE 299 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T+ I+W +D Q W G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDWR Sbjct: 300 TDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDWR 359 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +FM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR W+ Sbjct: 360 KGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWVE 419 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 EL VPT+YIH PHSWL + S NY P+V+HK A L + K Sbjct: 420 ELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVKN 467 >gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 479 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 163/482 (33%), Positives = 242/482 (50%), Gaps = 19/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+D+K L AA ++V+ VF P Q ++ + ++ L ++QK Sbjct: 6 LFWHRRDLRISDHKGL-AAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q + +++N E RD+ + + L+ Sbjct: 65 QYEKVGSQLLILQ----GQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120 Query: 131 VICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I P A + YKVYTP+ + Q + + LT Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180 Query: 189 TPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + GE+ A + L +FC ++ Y EQR+ PA Sbjct: 181 LKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFPAND 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYP 299 GTSQLS L GV+S R W + E + ++ +W EL WREFY+ M +P Sbjct: 241 GTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMYHFP 300 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + G P+ + W+++ QAW +G TG+PI+DAAMRQLN IGWMHNR RMI A+ Sbjct: 301 ELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVAN 359 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNPT Q +++D Sbjct: 360 FLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQKYD 418 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G +IR WLPEL+++ T+Y+ K+ + +YP PIVDHK+ + Y K+ Sbjct: 419 PEGEYIRQWLPELSSLDTEYLVT-GKISSKDREACDYPEPIVDHKQQQQQFKSLYKEQKE 477 Query: 480 QS 481 S Sbjct: 478 AS 479 >gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL F2-208] Length = 467 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F + S+ Sbjct: 2 TSVMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FTSVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD1] Length = 554 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 149/461 (32%), Positives = 219/461 (47%), Gaps = 10/461 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ P++ A +++ SL Sbjct: 79 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSLT 137 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L Q+G + D + +++ R+YE + D L+ Sbjct: 138 SLDRALRQQGAQLHVME----GDPTIAVPMLARAVGAQAVYWTRRYEPTAIACDTALKTT 193 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I S ++ P ++ A Q Y+V+TPF + L +L P LT Sbjct: 194 LRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWLT 253 Query: 186 GPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P + + + GE A L +F E + Y + RD PA GT Sbjct: 254 ADGSIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMGT 313 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS +L G ++P Q L+E + +L EL WREF HL+ +P Sbjct: 314 SRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHHLLYHFPHTT 373 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + D L W+QG TG P++DA MRQL GWMHNR+RM ASFL Sbjct: 374 DANFDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVASFLT 433 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q RFDP Sbjct: 434 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFDPDA 493 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +++ WLPEL+ +P +H P + YP P++D Sbjct: 494 AYLKRWLPELSGLPADVLHRPWKHPAALAV-CGYPAPMIDL 533 >gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 505 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 152/492 (30%), Positives = 231/492 (46%), Gaps = 31/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+D R+ DN AL A S V+ V++ P + + Q +++ SL ++ Sbjct: 14 VVWFRDDQRLGDNPALCHAV-ASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKLDD 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +LS G + D E + + + K+ +NR+Y D +++ L R Sbjct: 73 ALSALGGSLIVLR----GDEHEAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLVGR 128 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S + L P ++L Y+V++ + +A ++ + I Sbjct: 129 GIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPVPH 188 Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + GE+ A L F + + Y + RD+PA Sbjct: 189 NVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADMRDLPAA 248 Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 TS+LSPYL G +S RQ W + DL +L+E+ WREF Sbjct: 249 HATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWREFS 308 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ +P F + + W D + L+ W+ G+TG+P++DA MR+L GWMHN Sbjct: 309 YHLLYHFP-PLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWMHN 367 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW + +G D+ PYFRIFNP Sbjct: 368 RVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNP 427 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 +QG++FDPQG + RHW+PEL+ + + IHAP + + L YP PIVDH+ Sbjct: 428 VLQGQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDHQA 487 Query: 466 ACHHTLNQYYAA 477 A L Sbjct: 488 ARTRALESVKRV 499 >gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 499 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 114/482 (23%), Positives = 204/482 (42%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ + + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ K + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICESQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + D G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQR 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV ++ IH P SL+YP PI+D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSSENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 499 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 203/482 (42%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ + + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDNCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYL--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P SL+YP PI+D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 474 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 165/479 (34%), Positives = 239/479 (49%), Gaps = 24/479 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + +VW RNDLR+ D+ A+ A + D K++ VF + + + + + + Sbjct: 4 PLTVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSHLHT---RHDYFFQT 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L L + I ++ + + E S + + + + + Sbjct: 61 LRHFSDDLKSRNIAIRFL----YGEVTEAFASLLKEYSGVQAVFASKDYTSFATERDRTV 116 Query: 125 KRLQHRVICKSF--DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L + + L P SI+ YKVYTP+ K ++ V+ L + + Sbjct: 117 RTLFEERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRG-LLAGHEKKL 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 R N + D+ + +GE +A L +F +++ +Y E RD PA+ GT Sbjct: 176 RERTCEVAMNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL GVLS Q ++ F + ++ EL WR+FY + + Sbjct: 236 SRLSPYLKTGVLSVAQVYHAAYPLFEKGDDAAVT----FIKELAWRDFYTMIHYHF-ENL 290 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F + WN+D LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL Sbjct: 291 RNQEFQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLT 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KD +DWR GE YF +L+D D ASN GGWQWAAS G D+VPYFR+FNP Q KRFDP+G Sbjct: 351 KDYRIDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEG 410 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 TFIR ++PEL +VP IH P + + +YPLP VDH +A + + Sbjct: 411 TFIRQYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFE 469 >gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069] Length = 459 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 181/476 (38%), Positives = 253/476 (53%), Gaps = 20/476 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSH 59 M+ ++LVW RNDLR+ DN AL+ A VI ++ P EQ H + + Sbjct: 1 MRKN----INLVWFRNDLRVGDNPALFYAAEQ--GAVIGIY-LEPVEQREAHDDAPCKIG 53 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FIY S+ +++K L++ I + ++ S+E + Q +++N +Y NE R Sbjct: 54 FIYDSVNELRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNR 113 Query: 120 DKL-LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + L K FD V++PP S+ + YKV+TP++K+ ++ Sbjct: 114 DDELEKVLLGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSW----IEFHKTQGI 169 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + +D+ ++P GE A L+ K YY E RDIPA Sbjct: 170 SPLPIPSKQDFKIEKQHDYDFGHDYRKDLWPAGELAAQDRLK-EFLPKAGYYKEHRDIPA 228 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTS LSPYL++G +S +QC L E + +WL+E+IWREFYR ++ Sbjct: 229 VKGTSMLSPYLTVGAISAKQCIESLLE--WYEGDQEAFYLDTWLSEIIWREFYRQIIIDN 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + PF +++ WN L + W Q TGFP+IDAAMRQL GWMHNRLRM A Sbjct: 287 PQISYHLPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL K L+DWR GE +FM L+DGD ASNNGGWQW +STG D PYFRI +P Q +RF Sbjct: 346 MFLNKLCLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 DPQG FIR +PEL ++ + IH P S K L YP PI+D+K+A L Sbjct: 406 DPQGKFIRKLVPELASLNNKDIHFPTSQQRKE---LGYPEPIIDYKEARKAALALL 458 >gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 427 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 226/430 (52%), Positives = 298/430 (69%), Gaps = 4/430 (0%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D FP+ E + LR+FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFY Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHLM +YP++C +PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHN Sbjct: 238 RHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHN 297 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T QG+RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL Sbjct: 358 TTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417 Query: 472 NQYYAAKKQS 481 + Y AA+K + Sbjct: 418 SAYEAARKGA 427 >gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB18] gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB18] Length = 483 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 207/473 (43%), Gaps = 18/473 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A + LVW R+DLR++D+ AL A S A V+ +++ E + ++ Sbjct: 1 MANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L+ +G V + + + + ++ +N Sbjct: 60 AQSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVAD 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L RL + LL + + + L A Sbjct: 116 DLAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLALGDPPQPLTAPKA 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + + P + + GE A L+ F + Y +RD Sbjct: 176 LCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIAGYATERDR 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P TS LSP+L G +SPRQ W+ + +L+EL WREF RHL+ Sbjct: 236 PDRVATSTLSPHLRFGEISPRQVWH-AARFAAAERPAIAADVDKFLSELGWREFCRHLLF 294 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P ++ W D L+AW++G TG+P++DA MR+L G MHNR+RM+ Sbjct: 295 DNPDLATRN-LQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRVRMV 353 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFR+FNP +QG+ Sbjct: 354 AASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPILQGE 413 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 RFD +G ++R ++PE+ + + IH P + L YP PIVDH Sbjct: 414 RFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVDH 466 >gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 474 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 162/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF +Q Q S QS + AS+L Sbjct: 2 VSVMWFRRDLRIEDQKALARAI-ASQSPTLCVFQFNQKQLSQPP-SRNQSA-VVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L ++GI D I + Q T +++N RRD+ + Sbjct: 59 KEELKERGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I L I N + + YKV+TP+ + + + L+ Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + + A L F ++ Y RD P+ GTS LS Sbjct: 175 KTPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G++S R + + + G +L EL WR+ + H++ Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL KDL Sbjct: 286 IQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTKDLQ 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G FIR Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGDFIR 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L +VP +Y++ P + + +YP P+VDH + + +Y AK++ Sbjct: 406 SYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465 Query: 481 S 481 + Sbjct: 466 A 466 >gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 499 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 116/482 (24%), Positives = 201/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + Q + ++ +++ N + + ++ Sbjct: 59 NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ H K + K + + +V+A + + + P Sbjct: 115 K----QNNIVWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ G +S R+ + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSIYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FI+ W+PEL NV + IH P ++YP PI+D K+A + Y +K Sbjct: 404 PNGEFIKRWIPELENVSNENIHTPWLEKHNA---VDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 DS 462 >gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 679 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 231/497 (46%), Gaps = 27/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A T ++ +VW R DLRI DN AL AA V+ VFI +PE+ Q + Sbjct: 1 MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRA--GPVLPVFIWSPEEEGQFLPGRVSRWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + +SL+ G + S + + L T++FYN Y+ + RD Sbjct: 59 LKQSLVHLNESLTILGAPLVMRRAS---NVLAALLEIKKATGATQVFYNHLYDPVSLVRD 115 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ L I + ++ L P + + Q + ++ F + + + + LP Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175 Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232 I + GP +I + + G NA L F + Y Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWR 288 R TS LSP+L G +S R+ ++ ++ + + ++ + +L + +R Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R+L +P + + + W D +AW+QG TG+P++DA MR+L GW Sbjct: 296 EYSRYLSFNFP-FTHERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGW 354 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HN++R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI Sbjct: 355 LHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRI 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 NP I+G +FDP G ++R WLPEL+ +PT++IH P +L NYP PIV+ Sbjct: 415 DNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVE 474 Query: 463 HKKACHH---TLNQYYA 476 A L + +A Sbjct: 475 IAAARERLEQALAEMWA 491 >gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306] Length = 484 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 150/479 (31%), Positives = 213/479 (44%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G +S + LD Q +++NR+YE RD +++ Sbjct: 72 ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I + L P + YKV+TPF + + L P L Sbjct: 128 LRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLP 187 Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + Q + GE A +L F + Y E RD P G Sbjct: 188 ASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + N L+ +++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIANTLETHRTARNGAEI---DAYIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 +I W+PEL + + AP L+ YP PI+ + L Y + Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRTPIIGLAEGRDAALAAYAKTR 483 >gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424] Length = 475 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 174/477 (36%), Positives = 251/477 (52%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S V+ +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSP-HVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + Q G + + + + +F+N E RD+ + LQ + Sbjct: 65 NYQQAGSQLLILK----GKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183 I + F D +L PG IL + + YKVYTPF + Q L ++ +++L I Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQIS 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L ++P D + +P+ GE A L++FCK + Y EQRD+PAI GT Sbjct: 181 LAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W E + + + +W EL WREFY+H M F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 ADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q +++DP Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKYDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+PEL ++ T+Y+ YP PIVDHKK +Y K Sbjct: 419 GEYIRQWIPELKSLDTEYLVT-GKIPTSELRQCGYPEPIVDHKKRQAEFKQRYKEVK 474 >gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 484 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 218/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + + + SL Sbjct: 13 MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGGASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L G DS + LD Q +++NR+YE RD +++ Sbjct: 72 ALEDALRALGSGLVIR----AGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGSLPPLP 187 Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + Q + GE A +L F + Y E RD P G Sbjct: 188 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 T+I W+PEL +P + AP + YP PI+ + L Y ++ Sbjct: 425 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 483 >gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 487 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 233/476 (48%), Gaps = 15/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ DN AL+ A S ++V+ VFI P+ R+ ++ + F+ +L ++Q+ Sbjct: 6 LLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQELQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q GI + D L + +F+N E ++++ ++ L Sbjct: 65 RYAQMGIPLIWR----LGDPSVELRCLAIDLGARAVFWNADGEPFALQQESRVQASLAAA 120 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +LL PG +L A + Y V+TPF + Sbjct: 121 GIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWASLPKPDPYPIPKGLQPVSGLKAQ 180 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P + P AL + Y R+ PA GTS LSP+L Sbjct: 181 PLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILD-YERARNFPAEPGTSLLSPHL 239 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFI 308 G + RQ W +E ++ + + + L WREFY+H++A +P V G + Sbjct: 240 CWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETG-AYR 298 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL KDLL+D Sbjct: 299 RAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLID 358 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YFM +L+DGDLA+NNGGWQW+AS G D P RIFNP Q R+DP+G +IR + Sbjct: 359 WRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEYIRRY 417 Query: 429 LPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPEL + T + P +W + S YP PIVDHK +Y A ++ Sbjct: 418 LPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473 >gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 499 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 115/482 (23%), Positives = 200/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI DN AL A D V+ ++I P+ W+Q +S RQ F+ L ++ Sbjct: 1 MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + Q + ++ +++ N + + ++ Sbjct: 59 NTELTRLGQPLIL----MIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ K + K + + +V+A + + + P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDKWALVWHKRMSEKIVEAPNKLKFICENQTKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + + G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESIGLEYDNCY-----KRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + ++ K S S+L+ L W + + P Sbjct: 226 PYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 NIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P ++YP PI+D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHNA---VDYPDPIIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 NS 462 >gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 484 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 220/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 13 MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L G DS + LD+ Q +++NR+YE RD +++ Sbjct: 72 ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 187 Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + Q + GE A +L F + Y + RD P G Sbjct: 188 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 T+I W+PEL +P + AP + YP PI+ + L Y ++ Sbjct: 425 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 483 >gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2] gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2] Length = 484 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 254/484 (52%), Gaps = 17/484 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFI 61 ++LVW RNDLR+ + L+AA S + +AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ +SL+ +GI F+ E L + Q VT L+ NR+Y +NE +RD Sbjct: 61 LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ +RL+ + I D +L P + L K ++ Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180 Query: 182 IRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + T +A+ + GE+ A L +F + + Y RD Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVPEALTQQWAPGEEAAWQQLDQFMERSLADYRRNRDF 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS LS LS G LS C+ + D + GA W++EL WR+FYR +MA Sbjct: 241 PDLSGTSGLSVALSAGTLSVASCFRAATQAMADAGSRD--GAACWIDELAWRDFYRQIMA 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V G+ F P T+ +EW D L AW +G TG+P++DAAMRQL GWMHNRLRM+ Sbjct: 299 QFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMV 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP QG+ Sbjct: 359 TAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQGQ 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFD +G FI HW+P+L ++ ++ IH P L+ +YP P+V H + A Sbjct: 419 RFDSEGRFIAHWVPQLRDLDSKQIHEPWKQPL---LARDYPPPVVPHAGVRERVTVAFKA 475 Query: 477 AKKQ 480 AK + Sbjct: 476 AKSR 479 >gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 474 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q S QS + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQPP-SRNQSA-VVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L +KGI D I + Q T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I L I N + Q YK++TP+ + + + L+ Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + + + A L F ++ Y RD P+ GTS LS Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G++S R + + + G +L EL WR+ + H++ Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL KDL Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G FIR Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L +VP Y++ P + + +YP P+VDH + + +Y AK++ Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465 Query: 481 S 481 + Sbjct: 466 A 466 >gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 472 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 220/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L G DS + LD+ Q +++NR+YE RD +++ Sbjct: 60 ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + + L P L Sbjct: 116 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 175 Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + Q + GE A +L F + Y + RD P G Sbjct: 176 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASALEAQRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 293 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 353 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPH 412 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 T+I W+PEL +P + AP + YP PI+ + L Y ++ Sbjct: 413 ATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 471 >gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799] Length = 456 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 265/468 (56%), Gaps = 21/468 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R+DLR+ D+ AL+AA + V+A++IA+P+QW+ H R++ + YA++ + Sbjct: 1 MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++L+ GI +C +FDD L + C + + + + +NE ++ L +L Sbjct: 60 REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNERALEQKLADQLP 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + D+ L+ +I +Y+V+TPF + Q + P P Sbjct: 120 --VPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPEPQAAQPPLQ 177 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + +D ++P GEQ A L +FC++++ Y + RD PA GTS LSPY Sbjct: 178 ADDAWS-------ETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALSPY 230 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + GVLSPRQ + L ++ GA SWLNEL+WREFYR+L+ + + Sbjct: 231 FAAGVLSPRQAAHALSQQADGE------GAQSWLNELLWREFYRYLLYHHARLSRHDALF 284 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P E W + L+ W+QG TGFP++DA MRQLN GWMHNR+RM+ ASFLVKDL +D Sbjct: 285 PAKEA-RWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLHID 343 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR+GE YFM QL+DGDLASNNGGWQWAA G D+ PYFR F+P Q +RFDP G +IR W Sbjct: 344 WRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIRQW 403 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +PEL VP + +H L+ +YP P+VDHK Q+ Sbjct: 404 VPELAEVPARQLHK----GGPFLLAPDYPAPMVDHKAQTARFTAQFKQ 447 >gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 637 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 140/489 (28%), Positives = 225/489 (46%), Gaps = 27/489 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR+ DN AL AA V+ +FI TPE+ Q ++ SL+ Sbjct: 1 MACTIVWFRRDLRVEDNPALVAAVRA--GTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125 Q+ +SL+ G + + +I L Q T++F+N Y+ VR K+ ++ Sbjct: 59 QLHQSLTSLGSPLIMRRAQS---AISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPV 179 LQ V +F+ +L P I + + + + F + ++ R Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175 Query: 180 PAIRLTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P I T P+ + + + + G NA L F + Y R Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVD 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSP+L G LS R+ ++ ++ + + + +L + RE+ R+L Sbjct: 236 SATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYL 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D + W+QG TG+P++DA MR+L GW+HNR+R Sbjct: 296 CFNFP-FTHERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIR 354 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D +RI NP ++ Sbjct: 355 VIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLE 414 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G R+DP G ++R WLPEL+ +P+++IH P +L NYP PIV+ A Sbjct: 415 GYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARE 474 Query: 469 H---TLNQY 474 L + Sbjct: 475 RLEQALAEM 483 >gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1] Length = 446 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 217/474 (45%), Gaps = 32/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ + F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHT-VSESGARALGLFVLDDRLL--TTSGGARRDFLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D ++ + + ++ + Y RD Sbjct: 58 ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDA----A 106 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V + + PG + + Y+V+TP+ + +++ +A + + Sbjct: 107 VAEHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGSA----TVE 162 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+++ + P GE AL +FC + + Y + RD P + TS++S Sbjct: 163 WLDPNDVKARRVAIPEPESDGCPAGEAAALQRWAEFCDDDLAGYEDARDRPGLDATSRMS 222 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR L + A + +L WR+FY ++ P G Sbjct: 223 VYLKYGNIHPRTMLRDLARRRS-------TSAEQYRRQLAWRDFYADILFQRPDSARGNY 275 Query: 307 FIP--WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + AW +G TGFPI+DA MRQL WMHNR+RMI ASF VKD Sbjct: 276 DRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIVASFFVKD 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++FDP G + Sbjct: 336 LHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGEY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL +P + +HA K+ +YP PIVDH L +Y K Sbjct: 396 VRRWVPELRGIPGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444 >gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881] Length = 501 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 173/488 (35%), Positives = 258/488 (52%), Gaps = 30/488 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKV------IAVFIATPEQWRQHGISARQSHFIY 62 ++LVW RNDLR+ + L AA S + +AV+ QW +H ++ + ++ Sbjct: 1 MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ ++L+++GI + F E L + + VT L+ NR+Y +NE +RDK Sbjct: 61 ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120 Query: 123 LEKRLQHRVICKSFDDS------------VLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + +RL+ + + D P + + A+ Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 ++D R V A + + ++P +A+ + GE+ A L +F ++ + Y Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-------EALTQQWLPGEEAAWQQLDQFVEQALAGY 233 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 QRD P I GTS LS LS G LS C+ + D + GA W+ EL WR+F Sbjct: 234 RRQRDFPDIAGTSGLSAALSAGALSVASCYRAASQAMADAGSRD--GATCWIGELAWRDF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YR +MA +P V G+ F P T+ ++W++D AW +G TG+P++DAAMRQL GWMH Sbjct: 292 YRQIMAQFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRM+TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FN Sbjct: 352 NRLRMVTAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QG+RFD +G FI W+PEL + ++ IH P L+ +YP PIV H Sbjct: 412 PVRQGQRFDSEGRFIARWVPELRGLDSKQIHEPWKQPL---LAPDYPPPIVPHAGVRERV 468 Query: 471 LNQYYAAK 478 + AAK Sbjct: 469 TTAFKAAK 476 >gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM 1100] Length = 449 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 146/482 (30%), Positives = 216/482 (44%), Gaps = 47/482 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 ++ L W R DLR+ DN LY A S+ V+ +FI E + + F++ + Sbjct: 3 AITLFWFRRDLRLQDNAGLYHALK-SNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q L G + E V +++ N YE ++RD+ ++ Sbjct: 62 ELQAELEHLGSSMLVR----YGKPAEVWPEILQDYLVAEVYTNHDYEPRAIQRDEAVQNL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + I ++ + + +N + + + ++ I Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSRMWKNCLASQMETIQENGIEQVI 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--------YYYVEQRDIPA 238 P YP P+ +A+ Y + RD P Sbjct: 178 SFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPPTTVSRGLIKQYDKTRDFPY 237 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+L + G +S R+ R E ++LNELIWR+FY ++ + Sbjct: 238 LNGTSRLGIHFRFGTISIREKARRALELN-----------ETFLNELIWRDFYAQILFNF 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V + F P ++IEW D + W G TG+PI+DA +R+LN G+MHNR+RMITA Sbjct: 287 PHVAQ-RSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYMHNRVRMITA 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD DLASNNGGWQWAA G D+ PYFR+F+P Q ++F Sbjct: 346 SFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVFSPAAQQEKF 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAA 477 DP+ ++R W+PE + YP PIVDHK A L Y AA Sbjct: 406 DPEYKYVRKWVPE--------------------YGTDAYPKPIVDHKFARERCLEVYKAA 445 Query: 478 KK 479 K Sbjct: 446 LK 447 >gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 518 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 163/486 (33%), Positives = 244/486 (50%), Gaps = 19/486 (3%) Query: 5 TAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++M+ + W R DLR++DN L A +S +K++ +F + Q ++ + ++ Sbjct: 41 SSMTNSVIFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLG 99 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +++S Q G Q + + + +V +F+N E +RD + Sbjct: 100 CLQDLRESYQQLGGQLLIFQ----GNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQV 155 Query: 124 EKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLR 175 + LQ R I P + YKVYTPF ++ ++ L Sbjct: 156 IEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLE 215 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQR 234 SL I + ++P D + P+ GE A L FC +Y Y EQR Sbjct: 216 SLSEEEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQR 275 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + P I GTS LSP GV+ R+ W L + + +W E+ WREFY+H Sbjct: 276 NYPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQH 335 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 M F+P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR Sbjct: 336 CMYFFPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 394 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Sbjct: 395 RMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 453 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +++DP G +IR W+PE++++ T+Y+ S Y PIVDHK+ + Sbjct: 454 QAQKYDPDGEYIRLWVPEISSLDTEYLVT-GKIPPLEAHSCGYLQPIVDHKQQQREFKER 512 Query: 474 YYAAKK 479 Y K Sbjct: 513 YKQIKN 518 >gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 484 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 150/479 (31%), Positives = 217/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGVASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L +G DS + LD Q +++NR+YE RD +++ Sbjct: 72 ALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YK++TPF + + L P L Sbjct: 128 LRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRSLPPLP 187 Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + Q GE A +L F + Y E RD P G Sbjct: 188 AALKTDALDTLQLVPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ G ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLEARRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478 T+I W+PEL + + AP + YP PI+ + L Y ++ Sbjct: 425 ATYITRWVPELGKLAVKERFAPWLHPLSLARFASEYPRAPIIGLAEGRDAALAAYAKSR 483 >gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N3-165] Length = 467 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 236/480 (49%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + +E L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G + EL WR+ + +++ +P Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 >gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum JF-5] Length = 471 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 27/482 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLRNDLR+ DN AL AA + V+ VF+ P +++ SL Sbjct: 1 MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDP----AAETGGASRWWLHHSLA 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + +G + D+ + + + + R +E D+ + Sbjct: 55 ALEADFTARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I +++ P I +Y VYTPF +A P Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAG 170 Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + + + + GE A L F + Y QRD+P I G Sbjct: 171 DPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGIAG 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP+L G ++ W + +L ELIWREF +L+ P + Sbjct: 231 TSGLSPHLHWGEIAIDAVWRAAVAAPGRDAARQT-----FLKELIWREFAAYLLWHTPDL 285 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +P + W + + L AW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 286 AT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFL 344 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+ W+ GE +F L+D D ASN WQW A +G D+ PYFRIFNP +QG++FDP Sbjct: 345 VKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPD 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R ++PE+ N+P +Y+HAP + L +YP P+VD + L + Sbjct: 405 GAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERALAAFA 464 Query: 476 AA 477 A Sbjct: 465 AI 466 >gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 479 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 247/480 (51%), Gaps = 17/480 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ L+W R DLR+ DN AL+ A S +V+ VF+ P+ ++ ++ + F+ +L + Sbjct: 3 SLVLLWHRRDLRLGDNTALHGAAQRSP-QVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ +Q GI + + D L + +F+N + +++ + L Sbjct: 62 LQERYAQMGIPLLWRR----GDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I +LL PG +L A + Y V+TPF + + +++ Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSS--LPKPDPFPIPKSLQAVS 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245 + +P D F + GE A +L FC+ +++ Y RD PA QGTS L Sbjct: 176 SLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSLL 235 Query: 246 SPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 SP+L G + R+ W + E + +S +W EL WREFY+H++ +P V G Sbjct: 236 SPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVESG 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + +EW+ QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YFM +L+DGDLA+NNGGWQW+A G D P RIFNP Q R+DP+G + Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGEY 413 Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR +LPEL + T + P SW + YP PIVDHK +Y A ++ Sbjct: 414 IRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQQ 473 >gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 474 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 24/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ D KAL A S + + VF EQ Q S QS + AS+L Sbjct: 2 VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQPP-SRNQSA-VVASVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L +KGI D I + Q T +++N RRD+ + Sbjct: 59 KEELKEKGIDLYVMH----GDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + I L I N + Q YK++TP+ + + + L+ Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + + + A L F ++ Y RD P+ GTS LS Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL +G++S R + + + G +L EL WR+ + H++ Sbjct: 233 PYLRLGMVSIRTVYQAVSQAPASS------GQAVFLKELAWRD-FYHMVYVANPNQKKLA 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +EW+++ +AWK+G TG+PIIDAAM+QL GWMHNRLRM+ ASFL KDL Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+GE YF QL+D D ASN GGWQWAAS G D+VPYFRIFNP QGKRFDP G FIR Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP L +VP Y++ P + + +YP P+VDH + + +Y AK++ Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKEK 465 Query: 481 S 481 + Sbjct: 466 A 466 >gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 485 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 184/472 (38%), Positives = 263/472 (55%), Gaps = 7/472 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVWLR+DLR+ DN A + A+F A P QW+ HG +A + F +L+ Sbjct: 12 MNT-LVWLRSDLRLHDNP--ALAAAAAQGHTHALFFAAPGQWQSHGDAAIKIDFWRRNLV 68 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L++ G ++ ++ + L +C Q R+ + N ++ INE RRD +R Sbjct: 69 ALHQALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQR 128 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ I + LLPPGS+ N Y+V+TP+ +A + L A + P + Sbjct: 129 LQAEGIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKLRVAPPAPVRAPKAQGP 188 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++P GE A LR F + + Y E+RD+PA+ GTS L Sbjct: 189 AFAPAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSAL 248 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ GVLSP QC + ++G W+ E++WREFY+HL+A YP++ M + Sbjct: 249 SPYLACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMHQ 308 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P P T + W AW+ G TG PI+DAA RQL GWMHNRLRMI+A FL K+L Sbjct: 309 PMRPETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKNL 368 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP Q ++FDP G F+ Sbjct: 369 LIDWRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVFL 428 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R WLPEL N+ ++ IH P + YP IVD K + + + Sbjct: 429 RRWLPELANLDSKSIHEPSDAQRRASA---YPKAIVDLKSSRLRAIEAFSRL 477 >gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3] Length = 493 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 200/468 (42%), Positives = 268/468 (57%), Gaps = 17/468 (3%) Query: 10 HLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI + Sbjct: 12 ALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQIDFIQRHV 71 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L+ GI F+ Q +F + +L SYC + V ++F E+ K + Sbjct: 72 NLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQA 128 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA Sbjct: 129 CLDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAVPAPLGP 188 Query: 184 -LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L P S RF + GE A IL F K+KV Y + RD PA+ GT Sbjct: 189 MLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDRDFPALDGT 248 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL++GVLSPRQC L F D+++ S +WLNELIWREFYRHL+ +P + Sbjct: 249 SVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLS 308 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 309 KGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 368 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G Sbjct: 369 KHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDG 428 Query: 423 TFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 +FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 429 SFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476 >gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 137/485 (28%), Positives = 219/485 (45%), Gaps = 29/485 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAA--HQGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I + L P I + + ++ + K + +++ + P I Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKVYYYVEQ 233 +T V + + + G NA IL +F +++ YY + Sbjct: 176 PITAAVEAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 + TS LSPYL G +S R+ + + + D + + +L + RE Sbjct: 236 SNKVVGNATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP IQG +FDP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC 15264] Length = 490 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 163/462 (35%), Positives = 230/462 (49%), Gaps = 17/462 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN AL A H + V+ V+I + A ++ SL + Sbjct: 13 ILWFRRDLRLADNPALNKA-HATGRPVVPVYIHDEGTAVRP-AGAASLWWLDKSLRALAG 70 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL+++G + DS L Q +F NR +E RD + L+ Sbjct: 71 SLAERGATLILRR----GDSETELRRLIDQTGADTVFLNRLFEPEAWTRDADIAHGLKTD 126 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + LL PGS+LN + YKV+TPF KAL + P G + Sbjct: 127 GVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGPRQLGAAPGLES 186 Query: 190 PSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + + GE A L +F + Y RD PA TS+LSP Sbjct: 187 DDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPAEPATSRLSP 246 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +SP + W ++ D A ++ ELIWR+F HL+ +P++ K F Sbjct: 247 HLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAELIWRDFSAHLLHHFPTLPD-KAF 304 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + + W D AW +G TG+PI+DA MR+L G MHNR+RMI ASFL+KDLL+ Sbjct: 305 RPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVASFLIKDLLI 364 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE +F L+D DLASN+ WQW A +G D+ PYFRIFNP QG++FD + +++ Sbjct: 365 DWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKFDAEARYVKR 424 Query: 428 WLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 W+PEL VP ++IHAP + + L YP PIVDH Sbjct: 425 WIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIVDH 466 >gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7] Length = 493 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 196/468 (41%), Positives = 268/468 (57%), Gaps = 17/468 (3%) Query: 10 HLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI + Sbjct: 12 ALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHV 71 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L+ GI F+ Q +F + +L SYC + V ++F E+ K + Sbjct: 72 NLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQA 128 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA Sbjct: 129 CLDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAPLGP 188 Query: 186 GPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P I +PF + GE A IL F ++K Y + RD PA++GT Sbjct: 189 MLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEGT 248 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ +P + Sbjct: 249 SVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLS 308 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 309 KGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 368 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G Sbjct: 369 KHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDG 428 Query: 423 TFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 +FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 429 SFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476 >gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 476 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 235/484 (48%), Gaps = 19/484 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ + + W R DLR++DN L A S +K++ +F P ++ I+ + +++ L Sbjct: 1 MTNIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+S + G Q + + +V + +N E RDK +++ Sbjct: 60 RNLQESYQKLGGQLLIFQ----GQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKE 115 Query: 126 RLQHRVICKSFDDSVLLP---------PGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 LQ + I LL ++ + KA I ++ Sbjct: 116 ALQEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSL 175 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + I + +GE A L FC +Y Y EQR+ Sbjct: 176 SDEEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRNF 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLM 295 PAI GTS+LSP GV+ R+ W E + + + +W E+ WREFY+H + Sbjct: 236 PAIDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHCL 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F+P + G P+ + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RM Sbjct: 296 YFFPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 355 IVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +++DP G +IR W+PE++++ T+Y+ S YP PIVDHK +Y Sbjct: 414 QKYDPDGEYIRLWVPEISSLDTEYLVT-GKIPPLEAHSCGYPQPIVDHKHQQREFKERYK 472 Query: 476 AAKK 479 K Sbjct: 473 QIKN 476 >gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120] Length = 467 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 173/480 (36%), Positives = 240/480 (50%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY A D +I +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ F D +E L K+F+NR RD ++ Sbjct: 57 QQELAK-----TARLQIMFGDPMECLQQLKEAVPTWNKVFFNRDETGYGASRDAAAQQFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R I L + + YK++TP+ K + + + L+ P Sbjct: 112 DERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEMKEMPLKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GEQ A L F KE + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEIVHDL--PVSDAGEQAANARLASFIKEDLTDYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L++ G ++ EL WR+FY + +P +P Sbjct: 230 RYLRTGEISIRTIWQALQQTEA------TEGRATFEKELCWRDFYNMIYVSFPDQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + W++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPAGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL ++P ++IH P +K + +YPLPIVDHK+ + +Y +K+ Sbjct: 403 KYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRKLAIARYEFSKEH 462 >gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 247/481 (51%), Gaps = 26/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLRI DNKALY A +D +I +F PEQ+ S F ++S+ Sbjct: 2 TSVMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQFISG--SPSHQAF-FSSVANF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 +K + + Q F + IE L K+F+N+ +RDK Sbjct: 57 KKEIDK-NAHLQI----MFGEPIELLKRLKDAIPAWDKVFFNQDETGYGAKRDKAARAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++ I L + + + YK++TP+ K + + + +S+ P + Sbjct: 112 EYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKK 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F + + GE+ A L+ F K + Y + RDIP TS L Sbjct: 172 ELFPHDEEQFEKLIQDLPELDLKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQTSHL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G +S R W L++ KP G + EL WR+ + +++ + Sbjct: 232 SRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRD-FYNMIYVSFPNQKNE 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P IEW + + W++G TG+P++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 285 PIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 344 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 345 LIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R ++ EL+N+P ++IH P + L +YPLPIVDHK+ +++Y +K+ Sbjct: 405 RKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYEFSKE 464 Query: 480 Q 480 Q Sbjct: 465 Q 465 >gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551] Length = 560 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 161/489 (32%), Positives = 232/489 (47%), Gaps = 29/489 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 65 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 123 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 124 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 179 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178 L + F D V+ +LN + Y V+TP++ A + + D L Sbjct: 180 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 239 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G + + + + + L ++ Y +RD PA Sbjct: 240 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDFATRMDDYHARRDYPA 299 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 300 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 355 Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLRM Sbjct: 356 PDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 415 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 416 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 475 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 476 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARAA 535 Query: 470 TLNQYYAAK 478 TL +Y AK Sbjct: 536 TLERYAPAK 544 >gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118] gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens T118] Length = 492 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 163/490 (33%), Positives = 234/490 (47%), Gaps = 28/490 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN A + ++ VF+ + + R+ FI ASL ++ Sbjct: 8 GLMWFRRDLRVIDNAA-LCLALAACRQLHCVFVFDRDILDTLPRADRRVEFIRASLCELD 66 Query: 70 KSLSQK----GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L Q G+ + E + + +V +F YE + RD + Sbjct: 67 VALGQLSGKAGVGLIVRHAV----ASEEIVTLAKTLQVQAVFAAHDYEPQALARDARVRG 122 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--- 181 L H I + D V+ IL+ Y V+TP++ + + LR Sbjct: 123 ALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVAQ 182 Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 R G P + + + + L + E++ Y E RD+PA Sbjct: 183 ALVPRPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFFERMDSYHETRDLPA 242 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S L +L G +S RQ + + GA WL ELIWR+FY ++A + Sbjct: 243 VKGPSYLGVHLRFGTVSVRQLAATALQRQIQGS----RGAAVWLGELIWRDFYFSILANF 298 Query: 299 PSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P V KP + L QAW +G TG+P++DAAM Q+N G+MHNRLRM+ Sbjct: 299 PHVAQGAFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMV 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFLVKDL +DWR GE+YF L D DLA+NNGGWQW +S+G D+ PYFRIFNP Q + Sbjct: 359 AGSFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSE 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470 +FD G FIR +LP+L +P++ IHAP + ++ L NYP PIV H A T Sbjct: 419 KFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALT 478 Query: 471 LNQYYAAKKQ 480 L +Y KK Sbjct: 479 LQRYAVVKKH 488 >gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC] Length = 491 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 241/485 (49%), Gaps = 29/485 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 LVWLR DLR D+ ALY A +V F+ + S R+ FI+AS+L++ Sbjct: 9 ALVWLRRDLRCDDHAALYHALRR-FGRVYCAFVFDTDILDALPTRSDRRVEFIHASVLEL 67 Query: 69 QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L++ G + E + V ++ NR YE + RD+ Sbjct: 68 HQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAIERDR 123 Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRS 176 + + LQ I S L +L + Y V+TP+R+A +Q L + Sbjct: 124 RVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTPYPVA 183 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + + + L + ++ Y E RD Sbjct: 184 SHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQQLLQDFMPRMAAYHEARDY 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P +G S LS +L G +S R +L + GA +WL+EL WR+FY ++ Sbjct: 244 PGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFYFMILW 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V + F P ++++W+ L QAW TG+P++DAAMRQL+ G+MHNRLRM+ Sbjct: 300 HHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMV 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q + Sbjct: 359 VASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470 +FDPQG FIR +LPEL VP +IH P + L ++YPLP+VDH +A T Sbjct: 419 KFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERT 478 Query: 471 LNQYY 475 L +++ Sbjct: 479 LMRFH 483 >gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM 45221] Length = 476 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 163/482 (33%), Positives = 251/482 (52%), Gaps = 21/482 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW RNDLR +DN AL AA +A ++ VFI + + A +++ SL + Sbjct: 4 PLAIVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESLKR 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +S + G + DS+ L + + T +++NR+YE + +D +++ L Sbjct: 63 FAQSWNSCGGDLIFRN----GDSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKREL 118 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAI 182 KS++ S+L P +I N + YKVYTP+ KA+ V + + P Sbjct: 119 FEDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFPDE 178 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + ++ + + E+ A + +F +V Y RD P + GT Sbjct: 179 LPQSLALDALDLLPSNQWYRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRPDLDGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL G + PRQ + L+ + G F +L E+ WREF +++ +P Sbjct: 239 SALSPYLHFGQIGPRQLVHELELR----ADLEEQGPFIFLKEIYWREFAYNVLYHFPRTA 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P P E W +++ LL WK+G TG+PI+DA MRQL GWMHNR+RMI +S LV Sbjct: 295 ES-PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRMIVSSLLV 353 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL DW+ G +F L+D DLASN GWQW+ G D+ PYFRIFNP IQGK+FDP+ Sbjct: 354 KHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQGKKFDPEA 413 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R ++PEL+ +P +YIH P D+ +L ++YP P+V+H L+ Y + Sbjct: 414 LYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQRALSAYES 473 Query: 477 AK 478 + Sbjct: 474 FR 475 >gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC 23779] Length = 486 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 164/492 (33%), Positives = 235/492 (47%), Gaps = 24/492 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V + W R DLR+TD++ALYAA S VI VFI + A A L Sbjct: 1 MPV-ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLE 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L Q+G + L + + + +++NR Y ++RD ++ Sbjct: 60 ALDHDLQQRGSRLIVRH----GQPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHW 115 Query: 127 LQHRVICKSFDDS---------VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 L+ + + K ++ + LV A + + Sbjct: 116 LREQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFV 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ + P+ PS F+ I +Q + K V Y + R++P Sbjct: 176 APPSDLASLPI-PSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMA 296 A GTSQLS L +G +S RQC + + + L + + G +WL EL WR++Y L+ Sbjct: 235 AEAGTSQLSVDLRMGTISIRQCLKQAVDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLIY 294 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P ++I W D AW+QG TG+PI+DA RQLN + WMHNR+RMI Sbjct: 295 HNP-YMLNGSLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRMI 353 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG 415 +ASFL+KDLL+DWR GE YFM QL DGD +NNGGWQWAA +G + PYFRIFNP Q Sbjct: 354 SASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 K+ DP G +IR ++PEL NVP YIH P + + +YP P+V+H A Sbjct: 414 KKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARER 473 Query: 470 TLNQYYAAKKQS 481 L Y A + + Sbjct: 474 ALAAYRTALQTN 485 >gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera] gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera] Length = 696 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 223/488 (45%), Gaps = 28/488 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VI VFI +PE+ Q ++ SL+ + Sbjct: 6 IVWFRRDLRVEDNPALVAAARA--GIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDS 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 SL G + D++ L Q T++FYN Y+ + RD +++ L H Sbjct: 64 SLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIH 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187 + +F+ +L P + + Q + + F + + + L + P Sbjct: 121 NIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGR 180 Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + G +A L F K ++ Y R Sbjct: 181 ISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNAN 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TSQLSP+L G +S R+ ++ + + + + +L + +RE+ R+L Sbjct: 241 TSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIGFREYSRYLSFN 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + + W D + ++W+QG TG+P++DA MR+L GW+HNR+R++ Sbjct: 301 FP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRVVV 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK L + WR G +YF LLD DL + GWQ+ + + D R+ NP I+G + Sbjct: 360 SSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEGYK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC---H 468 FDP+G ++R WLPEL+ +PT++IH P +L NYPLPIVD A Sbjct: 420 FDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSARDQLQ 479 Query: 469 HTLNQYYA 476 +L + + Sbjct: 480 QSLAEMWE 487 >gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 476 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 154/485 (31%), Positives = 240/485 (49%), Gaps = 23/485 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V RNDLR+ D+ AL+ A V+ V++ + + + SLL+ Sbjct: 4 PTTIVLFRNDLRLADHPALWYAAQR--GPVLPVYL----RHAADSYGSAWRWWHGESLLK 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q +L+Q+G+ + + L +++NR+Y+ + + D+ L+ Sbjct: 58 LQAALAQRGLPLLLRSGT----AKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLF 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAI 182 + + LL Q Y+V+TPF KA++ + AI Sbjct: 114 KELGVEARSFPGNLLVEPWEHLREGQPYRVFTPFWKAMLARHRFPQPLAEPESYRAPTAI 173 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + +GE+ A LR F E + +Y E R++P Sbjct: 174 PASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGKPFV 233 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+ G +SPRQ W L + + ++L EL WREF HL+ +P + Sbjct: 234 SRLSPYLAHGEISPRQIWWHLSRLAEEQGAWRR-NVDAFLRELGWREFSWHLLYHFPDLP 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P P ++ W +D L+AW + TG+PIIDA MR+L GWMHNR+RMI ASFLV Sbjct: 293 R-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIVASFLV 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W+ GE +F L+D DLA+N+ WQW A G D+ PYFR+FNP +Q ++FDPQG Sbjct: 352 KDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQKFDPQG 411 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++R WLP+L +P +IHAP L YP P+VDH +A L + A Sbjct: 412 DYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEAREAALAAWEA 471 Query: 477 AKKQS 481 ++++ Sbjct: 472 IRREN 476 >gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184] Length = 531 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 228/471 (48%), Gaps = 23/471 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR+TD AL A S ++ VFI + +++ SL ++ Sbjct: 49 AIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWWLHGSLARLD 107 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L++ G + D+ ++ +++NR+Y + D L+ L+ Sbjct: 108 TALARHGGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKA 163 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIR 183 R + + L P +L + Y+V+T + +A ++ + A R P + Sbjct: 164 RGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPERIAFHPWPQ 223 Query: 184 -----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P D+ D E AL L F + Y + RD P Sbjct: 224 AVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPD 283 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF L+ + Sbjct: 284 RPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREFSYTLLYHF 343 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ F + + W D L+AW++G TG+P++DA +R+L T GWMHNR+RM+ A Sbjct: 344 PALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVA 402 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFNP QG++ Sbjct: 403 SFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKC 462 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 DP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 463 DPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 513 >gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum ferrodiazotrophum] Length = 468 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 150/476 (31%), Positives = 226/476 (47%), Gaps = 21/476 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R++LR++DN+ L A + V+ V++ P + + SL ++ Sbjct: 3 SIVWFRHNLRLSDNRPLSLAAK--EGAVLPVYVHDPTLSLFPD--RVRQRWRKRSLWELD 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL + G S E L + R +++ R + ++ LE L+ Sbjct: 59 RSLRKLGNRLHVFS----GSSCEILLKVATRVRAERVYAFRGLTGEDRALEERLENELRK 114 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L PP +K++TP+ + Q+ + P L Sbjct: 115 AGVSLHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPEHPLPAPSRVDSLPSLA 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + F GE A+H LR+F + + Y +RD PA +GTS+LSP+ Sbjct: 175 SLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLSPH 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S R+ RL+E + +L EL WREF HL+ F+P + P Sbjct: 235 LASGEISVREIVQRLQESDAPGKDR-----EKFLEELGWREFSAHLLFFHPEML-VDPLK 288 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR-QLNTIGWMHNRLRMITASFLVKDLLV 367 +EW D AWK+G TGFP++DA M +L GWMHNR+RM+ ASFLVK+L V Sbjct: 289 KEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLVKNLGV 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ G +F +LLD D A+N WQW A G D+ PYFRIFNP +QG+R+DP G ++R Sbjct: 349 SWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHGKYVRR 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSL-----NYPLPIVDHKKACHHTLNQYYAAK 478 +LPEL+ +P + IH P D YP PIVD ++ L +Y + Sbjct: 409 FLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIVDLSESREAALRRYRRFR 464 >gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1] Length = 632 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 167/488 (34%), Positives = 257/488 (52%), Gaps = 22/488 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + + +I +++ +P+ W H +S + F S+ Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVEL 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 +QK LS+ I + + L + V +F N +YE +E R ++L+ Sbjct: 198 LQKELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ + + D ++PPGS+ A + Y VY+P+ +A I +L + P Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNP 317 Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232 + F++ ++ +P GE A+ L +F EK+ Y + Sbjct: 318 TNFRDKFSKLFEFSVPSLPECKALTPEEKERFSRLWPAGEAAAVDRLERFLVEKIVKYKD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ WR+FY Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF I W ++ AW +G TG+PI+DAAMR LN G+MHN Sbjct: 438 RHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNHTGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 498 RLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKNDLSLNYPLPIVDHKKACH 468 IQ ++FD G FIR W+ EL+ V + +H P++ + + YP P+V+H+ A Sbjct: 558 WIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVEHRVARE 617 Query: 469 HTLNQYYA 476 L +Y Sbjct: 618 RCLKRYKE 625 >gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 484 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 213/479 (44%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G +S + LD Q +++NR+YE RD +++ Sbjct: 72 ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I + L P + YKV+TPF + + L P L Sbjct: 128 LRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLPPLP 187 Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + Q + GE A +L F + Y E RD P G Sbjct: 188 ASLKTDALDMLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ G ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLETHRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478 +I W+PEL + + AP ++ YP PI+ + L Y ++ Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYPRAPIIGLAEGRDAALAAYTKSR 483 >gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] Length = 512 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 197/514 (38%), Positives = 272/514 (52%), Gaps = 44/514 (8%) Query: 7 MSVH--------LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGIS 54 MSV+ L+W R DLR+TDN+A AAC + AK+ A++IATP QW QH I+ Sbjct: 1 MSVNQNRSGKHALMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIA 60 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 Q FI + + + L G+ F+ Q +F D +L SYC + + ++F + Sbjct: 61 PIQLDFIQRHVNLLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFA---GQE 117 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E+ K + ++ + D+ LLPPG++LN + MY+V+TPF + + + + Sbjct: 118 PEINEQKRDQACVEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAI 177 Query: 175 RSLPVPAI----------------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 L VPA + + GE Sbjct: 178 LPLGVPAPLGSILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGE 237 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 A +L +F ++KV Y + RD PAI GTS +SPYL+IGVLSPRQC L + F ++++ Sbjct: 238 GQAKRLLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIV 297 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 S +WLNELIWREFYRHL+ +P + G F + + W + AW +G TG Sbjct: 298 DDTSPGRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTG 357 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +PI+DAAMRQLN GWMHNRLRM+ ASFL K LL+DWR GE YF L+DGDLA+NNGGW Sbjct: 358 YPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGW 417 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QW+A G D+ PYFRIFNP Q ++FDP G FIR +LPEL + +H P+ + Sbjct: 418 QWSAGCGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLF 477 Query: 453 S-------LNYPLPIVDHKKACHHTLNQYYAAKK 479 +YP IV+H A L KK Sbjct: 478 EAPLFASQADYPNAIVEHNAARARALTVLGVLKK 511 >gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614] Length = 453 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 223/470 (47%), Gaps = 24/470 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DN AL A +D V+ +F+ P W A + ++ ASL + Sbjct: 7 AVLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWG--PAGAARRAYLGASLRALD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 SL ++G + D + ++ + RRD +E+ L Sbjct: 63 ASLRERGTRLSVVR----GDPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQALTG 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + PG + N A Y+V+TPF +A ++ + + TG + Sbjct: 119 AGAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRGPVGV-----PEGTGWL 173 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P P + A ++V Y E RD PA+ GTSQ+S + Sbjct: 174 RLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTSQMSAH 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR L GA ++ EL WREFY ++ P + Sbjct: 234 LKWGEIHPRTMLADLARRRGA-------GAATYRKELAWREFYADVLHARPETAR-QYLR 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P ++ +++ L AW+ G TGF ++DA MRQL GWMHNR+RMITASFLVKDL ++ Sbjct: 286 PEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVKDLHLE 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W++G +F+ L+DGDLASN GWQW A G D+ PYFR+FNPT QG+RFDP+G ++R W Sbjct: 346 WQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGEYVRRW 405 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL + + PH ++ YP PIVDH L ++ + Sbjct: 406 VPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRWERIR 453 >gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans K601] Length = 491 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 166/485 (34%), Positives = 242/485 (49%), Gaps = 29/485 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68 LVWLR DLR D+ ALY A +V F+ + S R+ FI+AS+L++ Sbjct: 9 ALVWLRRDLRCDDHAALYHALRR-FGRVYCAFVFDTDILDALPTRSDRRVEFIHASVLEL 67 Query: 69 QKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L++ G + E + V ++ NR YE + RD+ Sbjct: 68 HQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAIERDR 123 Query: 122 LLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRS 176 + + LQ I S L +L + Y V+TP+R+A +Q L + Sbjct: 124 RVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTPYPVA 183 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + + + +L + ++ Y E RD Sbjct: 184 SHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQLLLQDFMPRMAAYHEARDY 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P +G S LS +L G +S R +L + GA +WL+EL WR+FY ++ Sbjct: 244 PGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFYFMILW 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V + F P ++++W+ L QAW TG+P++DAAMRQL+ G+MHNRLRM+ Sbjct: 300 HHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMV 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP Q + Sbjct: 359 VASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470 RFDPQG FIR +LPEL VP +IH P + L ++YPLP+VDH +A T Sbjct: 419 RFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERT 478 Query: 471 LNQYY 475 L +++ Sbjct: 479 LMRFH 483 >gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1] Length = 501 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 155/498 (31%), Positives = 237/498 (47%), Gaps = 30/498 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---------- 56 M+ L+W R DLR+ DN AL+AA VI V++ AR Sbjct: 1 MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59 Query: 57 --QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 +++ SL + ++ ++G + D + L +++NR+YE Sbjct: 60 AASRWWLHHSLEALDAAVRERGGRLILRR----GDPLAELQEIVRATGAKGVYWNRRYEP 115 Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 RD ++ L + K+F+ ++L P +ILN ++V++ + + + V A Sbjct: 116 AARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAP 175 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYY 229 + P ++ P A D + GE +A + +F + Sbjct: 176 RKLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDR 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWR 288 Y E+RD P GTS LS L G +SPRQ W ++ + + P +GA +L EL WR Sbjct: 236 YDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGVFPPSNGARIFLAELGWR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 EF HL+ +P + + + L+AW++G TG+PI+DA MRQL G Sbjct: 296 EFAYHLLWHFPHTIEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQLWQTG 355 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WMHNR+RMI ASFLVK L + W G +F L+D DLA+N GWQW+A G D+ PYFR Sbjct: 356 WMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAPYFR 415 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIV 461 IF P +QG++FD G ++R W+PEL +P +++HAP L NYP P+V Sbjct: 416 IFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPRPVV 475 Query: 462 DHKKACHHTLNQYYAAKK 479 DH A L + ++ Sbjct: 476 DHAAARAEALAAFRQLRE 493 >gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1] Length = 477 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 148/483 (30%), Positives = 231/483 (47%), Gaps = 19/483 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVWLR DLR+ D AL A ++ ++ V+I P + R + A +++ SL Sbjct: 1 MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETR-PTVGAASCWWLHHSLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L+ G C + S E L + ++ E +++ + + Sbjct: 59 ALDAELASAGSRL----CLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEA 114 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + D +L P ++ N + Y+ +TPF +++ L P Sbjct: 115 LAAIGVRLEVLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGLPE 174 Query: 186 GPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P + + + P + G A L +F Y E+RD PA G Sbjct: 175 AIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPG 234 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G +S R W+ +++ + ++L EL WREF HL+ P + Sbjct: 235 TSRLSPHLHFGEISIRAVWHAVRDA-QQMQPAAADALDTFLAELGWREFAYHLLWQQPEL 293 Query: 302 CMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 ++ + D LL AW++G TG P++DA MR+L GWMHNR+RM+ SF Sbjct: 294 HRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGSF 353 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK+L + W+ GE +F L+D DLASN+ GWQW + G D+ PYFRIFNP QG+RFDP Sbjct: 354 LVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFDP 413 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 G ++RHW+PE+ +P +IH P + L +YP P+VD + L + Sbjct: 414 DGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEALAAF 473 Query: 475 YAA 477 +A Sbjct: 474 HAL 476 >gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria ATCC 35937] Length = 472 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 222/480 (46%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHDP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 60 ALDDTLRALGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRN 115 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180 L+ R I ++ L P + YKV+TPF + + L V A P+P Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A T + + D+ + P GE A +L F + Y E RD P Sbjct: 176 ATLETVALESLALLPRLDWDHGFWEHWQP-GEAGAHEMLEIFIDGALDGYRENRDRPDRV 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSP+L G ++P + + L+ + G ++ +L WR+F HL+ +P Sbjct: 235 GTSQLSPHLHFGEIAPWRIASTLEAQRNARNAAEIDG---YIRQLGWRDFSYHLLHHFPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI AS Sbjct: 292 TTNQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 Q T+I W+PEL + + AP L+ YP PI+ + L Y + Sbjct: 412 QATYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRSPIIGLAEGRDAALAAYAKTR 471 >gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans 2-40] Length = 483 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 236/490 (48%), Gaps = 34/490 (6%) Query: 11 LVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+WL N+LR++DN AL+AA +++ +V+ +I I + +++ SL Sbjct: 4 LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTA--NPWPIQGAAAWWLHHSLAAF 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+ KG V + D + Q ++ ++ ++ +E EV+ + K + Sbjct: 62 TNSIKNKGGVLSLFE----GDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWCK 117 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180 I CK F +LL P + LN + ++V+TP+ KA + ++L + Sbjct: 118 QHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWAA 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + GE+ A LR+ ++K+ Y RD PA+ Sbjct: 178 KKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAVD 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR---HLMAF 297 GTS LS +L G +SPRQ W ++ +L +L+WR+F H Sbjct: 238 GTSLLSAHLRFGEISPRQIWQQV------ATQMDGEQCAPFLRQLMWRDFSYALLHHWPH 291 Query: 298 YPSVCMGKPFIPW-TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + F + +K + L AW+ G TG+PI+DA MRQL GWMHNR+RMI Sbjct: 292 IPQQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRMI 351 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K L + W G ++F L+D DLA+N GWQW A G D+ PYFRIFNP +QG+ Sbjct: 352 VASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQGE 411 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN--YPLPIVDHKKACH 468 +FD QG +I+ W+PEL +P ++IHAP L N YPLPIVDHK A Sbjct: 412 KFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDHKYARE 471 Query: 469 HTLNQYYAAK 478 L Y K Sbjct: 472 AALAAYQQLK 481 >gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium BAL38] Length = 428 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 217/470 (46%), Gaps = 45/470 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A ++++ V+ +FI E Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLEDNVGLFHALNSTED-VLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L++ G IE + +T ++ N YE +RDK + + Sbjct: 60 QSELNKIGKSLAVFH----GKPIEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D V+ ++ Y VYTPF K +N + L Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKLVHYTSEDKLDKVA 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D F+ + + + Y R+ PA+ TS L Sbjct: 176 KHSYPFLSLTDIGFEKSNIKVSA---------FDVSENLIQNYEATRNFPALNKTSYLGI 226 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +S R+ + E D ++ NELIWREF+ ++ +P F Sbjct: 227 YLRFGAVSIRKMIAKAIAEKND----------TFWNELIWREFFMQILWHFPH-TYNSSF 275 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + I WN + L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K LL+ Sbjct: 276 RPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKHLLI 335 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD +I+ Sbjct: 336 DWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL T+Y YP PIVDHK+A L Y A Sbjct: 396 WIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426 >gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 470 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 172/480 (35%), Positives = 244/480 (50%), Gaps = 24/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLR+ DN AL+ A +S+ +++ VF PEQ + QS F +AS+L Sbjct: 2 VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKST-VNQSAF-FASVLYF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 + L ++GI + D + S + +F+N RD+ Sbjct: 59 KNKLKKQGINLNI----MYGDINDCFASLKQKLPDWHDIFFNFDERGFGRNRDQKSVAFF 114 Query: 128 QHRVICKSFDDSVLLPPG--SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + ++ K+ G + + YKV+TP+ K I+ A + + I+ Sbjct: 115 EDKLKVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKRIKSA 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P N + + G + A +L +F E + Y E+RD PA TS Sbjct: 175 RLLFPENEQLLETFIDDRFSFIKKDLGSETAKKVLNRFINESLDQYDEERDFPANDSTSH 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL G +S R W + + G +++ EL WR+FY + YP+ Sbjct: 235 LSRYLRTGEISIRTVWRAIDQ------SPDSDGKSTFMKELCWRDFYNMIYVMYPNQN-V 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++W + +AW+ G TGFPI+DAAMRQLN GWMHNRLRMI ASFL KD Sbjct: 288 ESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKD 347 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FD G F Sbjct: 348 LLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDSNGLF 407 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ ++PEL NV + IH P + + NYP PIVDH A ++ Y ++K Sbjct: 408 IKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARKRAISIYESSK 467 >gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 468 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 179/471 (38%), Positives = 258/471 (54%), Gaps = 7/471 (1%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR DN AL AAC N V A+F+ W+ H + + + L + + Sbjct: 3 AVVWFRSDLRTVDNPALDAACLNHK-HVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFK 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ KGI F F S + +C + +V ++ NR+Y ++E+ RDK + Sbjct: 62 QELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQ 121 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R I + FD ++L+PP ++ YKV+TPF +A + S P Sbjct: 122 RDIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWR---TEVAKISDWTPESWRVENT 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S+ + +P+G Q + L +F + +V Y +RD P++ GTS +S Y Sbjct: 179 VASSTELPQCPLERKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSAY 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 +G ++P+ L + + GA +WL E+ WREFY+HLM P + G+ + Sbjct: 239 FEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENYQ 298 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 T+ + W QAW G TGFPI+DA MRQLN GWMHNRLRMI A+FLVKDLL+D Sbjct: 299 TETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLID 358 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YFM L+DG +NNGGWQW+AS G D+VPYFR+FNP Q ++FDP G +IR W Sbjct: 359 WRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRTW 418 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + EL +VP+++IH PHS+L Y PIVDH +A L+ + K Sbjct: 419 IKELADVPSKHIHWPHSYLK--QHKTGYVSPIVDHSEARERFLSTFKQVKN 467 >gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23] gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99] Length = 467 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 164/481 (34%), Positives = 237/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHVQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTVWQALQETKA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4] Length = 493 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 196/467 (41%), Positives = 268/467 (57%), Gaps = 17/467 (3%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 L+W R DLR+TDN+AL AAC AK+ A++IATP QW H ++ Q FI + Sbjct: 13 LMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L+ GI F+ Q +F + +L SYC + V ++F E+ K + Sbjct: 73 LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFA---GREPEINEQKRDQAC 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D+ LLPPG++LN + MYKV+TPF + + + + L VPA Sbjct: 130 LDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAPLGPM 189 Query: 187 PVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P I +PF + GE A IL F ++K Y + RD PA++GTS Sbjct: 190 LPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEGTS 249 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPYL++GVLSPRQC L F ++++ S +WLNELIWREFYRHL+ +P + Sbjct: 250 VISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLSK 309 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G F + ++W + AW +G TG+PI+DAAMRQLN GWMHNRLRM+ ASFL K Sbjct: 310 GHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK 369 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR GE YF L+DGDLA+NNGGWQW+A G D+ PYFRIFNP Q ++FDP G+ Sbjct: 370 HLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGS 429 Query: 424 FIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463 FIR +LPEL + + +H P S + L + YP IV+H Sbjct: 430 FIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476 >gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes PCC 7420] Length = 475 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 173/477 (36%), Positives = 243/477 (50%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AAC S KVI VF P+ + I+ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++ G + + + + + +NR E RD+ ++ L+ + Sbjct: 65 RYAEAGSQLLILH----QNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEK 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAIR 183 I L PG I ++ YKVYTPF K A SL Sbjct: 121 GIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQD 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + V +P + F + + GE+ A L +FC + Y QR++PAI GT Sbjct: 181 VVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W + + + G +W EL WREFY+H + F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ E W+ + L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 ASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q +++DP Sbjct: 360 TKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR WLPEL+++ T+ + D+ S YP PIVDHKK +Y K Sbjct: 419 GEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKKRQKEFKQRYQQQK 474 >gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 474 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 227/474 (47%), Gaps = 14/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSP-KIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYRQKGSQLLIIR----GKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I L PG +L + Y VYTPF K Q + + Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGEK 180 Query: 190 PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P GE+ A L +FC+ + Y E R+ PA+ GTS+L Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPAVDGTSRL 240 Query: 246 SPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S L G + R W L+ + K +W EL WREFY+H + F+P + +G Sbjct: 241 SAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+G + Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +V T+Y+ YP PIVDH + Y K Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471 >gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121] Length = 448 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 226/474 (47%), Gaps = 29/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++W R DLR+ D L AA ++ + + +F+ + G S RQ+ ++A+L Sbjct: 1 MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLGPAG-SPRQNQ-LFANLS 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + +V + D + + ++ + Y RRD Sbjct: 58 ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDA----A 106 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +V + + PG + YKV+TP+ + +++ + + +R Sbjct: 107 VAEKVELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPASTDVG-TVRWFD 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P PR P + +GE AL +++C+ + Y ++R+ P + TS++S Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L G + PR L + D GA ++ +L WR+FY ++ P Sbjct: 226 IPLKYGTIHPRTMLADLSKRLGD-------GAQAYRRQLAWRDFYADILFQRPDSARKNY 278 Query: 307 FIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVKD Sbjct: 279 DDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G YFMSQL+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT+ Sbjct: 339 LHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL +VP + +H K ++YP PIVDH L +Y K Sbjct: 399 VRRWVPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 447 >gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 427 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 224/430 (52%), Positives = 296/430 (68%), Gaps = 4/430 (0%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E NE +RD +EK L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 61 EFNERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231 +P P IR++G ++ P +YP QA D FP+ E + LR FC + Y Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 +RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFY Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHN Sbjct: 238 RHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHN 297 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL Sbjct: 358 TTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417 Query: 472 NQYYAAKKQS 481 + Y AA+K + Sbjct: 418 SAYEAARKGA 427 >gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J2-071] Length = 467 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 237/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++N +RD+ + Sbjct: 57 KQEIDK-----NAHVQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIWKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQELQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K++ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKER 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15] Length = 632 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 250/487 (51%), Gaps = 21/487 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + K +I V+I +P+ W H +S + F S+ Sbjct: 139 IHWFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVEL 198 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 ++K L + I + + L + V +F N +YE +E R +L+E Sbjct: 199 MKKELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELM 258 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ + D ++PPG++ + Y VY+P+ ++ + +L P Sbjct: 259 LENGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNL 318 Query: 187 PVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 FD ++P GE A+ L +F EK+ Y Sbjct: 319 AGFREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQA 378 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R + L G +W++E+ WR+FY Sbjct: 379 TRNFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFY 438 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF IEW + AWK+G TG+PI+DAAMR L +MHN Sbjct: 439 RHVLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHN 498 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 499 RNRMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 558 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469 +Q ++FD +G FIR W+ EL+ V + +H P++ +++ YP P+V+HK A Sbjct: 559 WLQSEKFDEEGDFIRLWVEELSGVQGKAVHNPYADKKAAEVARKNGYPKPVVEHKFARER 618 Query: 470 TLNQYYA 476 L +Y A Sbjct: 619 CLARYKA 625 >gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4] Length = 446 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 216/474 (45%), Gaps = 32/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R DLR+ D L+ S A+ + +F+ + + F++ SL Sbjct: 1 MDTALVWFRRDLRLGDLPTLHT-VAESGARALGLFVLDDRLLKTS--GGARRDFLFRSLA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL + +V + D ++ + + ++ + Y RD Sbjct: 58 ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDA----A 106 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V + + PG + + Y+V+TP+ + +++ +A + + Sbjct: 107 VAEHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTG----PDTVE 162 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P ++ + + GE AL +FC++ + Y + RD P + TS++S Sbjct: 163 WMDPDDVKTRRVTIPEPESDGYAAGEAAALERWAEFCEDDLAGYEDARDRPGLDATSRMS 222 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR L A + +L WR+FY ++ P G Sbjct: 223 VYLKYGNIHPRTMLRDLARRRSK-------SAEQYRRQLAWRDFYADILFQRPDSARGNY 275 Query: 307 FIP--WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 AW +G TGFPI+DA MRQL WMHNR+RMI ASF VKD Sbjct: 276 DRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIVASFFVKD 335 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G YFM+QL+DGDLA+N GWQW A +G D+ PYFR+FNPT QG++FDP G + Sbjct: 336 LHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGEY 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL + + +HA K+ +YP PIVDH L +Y K Sbjct: 396 VRRWVPELRGISGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444 >gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 496 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 167/470 (35%), Gaps = 17/470 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W + DLR+ D+ AL A ++ ++I P W + S RQ FI L +++ Sbjct: 6 ILWFKRDLRVQDHPALTHAARL--GPILPLYIVEPGLWAEPDASGRQYAFICECLESLRE 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G+ D++ L+ V L + + Sbjct: 64 DLAGLGLTLVVR----VGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVA----- 114 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + P S + L + R +++ V ++ + A+ P Sbjct: 115 EWARGQGVRWEEMPQSGVVRRLGSRDAWQGARDRVMRAPVLGPVQGVRGLAVASDDLPAP 174 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + P + G + + Y + + S++SP+L+ Sbjct: 175 ATLGLKDACPLRQKGGR---GAGMRALQSFLSTRGESYQRAMSSPLHGARACSRISPHLA 231 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LS R+ S+ L WR+ + + P + + Sbjct: 232 FGTLSLREAVQTGAMAPGGRGADWARSMRSFQARLAWRDHFMQKLEDEPEIERRCLHPAY 291 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 D+ L AW G TG P +DA MR L GW++ R+R + + L +DWR Sbjct: 292 EGLRPREADALRLAAWSTGETGLPFVDACMRSLLATGWLNFRMRSMLMAVASYHLWLDWR 351 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 D + + Q +G + RI+NP QG DP G F R WLP Sbjct: 352 STGPVLAQAFTDYEPGIHWP--QVQMQSGTTGMNTIRIYNPVKQGLDQDPTGEFTRRWLP 409 Query: 431 ELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 EL VP Y+ P W + L YP PIVD +A +A ++ Sbjct: 410 ELAQVPDAYLQRPWDWPEAERLLERGYPAPIVDPVEAARVAREAVWACRR 459 >gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis FSC198] gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp. tularensis FSC033] gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis NE061598] Length = 499 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 202/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ + + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQHMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + D G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P SL+YP P +D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459] gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b H7858] gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816] Length = 467 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175] gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262] gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-194] gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220] gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott A] Length = 467 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815] Length = 504 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 172/500 (34%), Positives = 247/500 (49%), Gaps = 38/500 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---------QHGIS---ARQ 57 LVW R DLR DN ALY A + + +V F+ + + Sbjct: 14 GLVWFRRDLRTGDNAALYYALRHCE-RVWCAFVFDTTILQPLINWAHRRNAHAGKVQDAR 72 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 FI AS+ ++ +SL + G D ++ + Q V +F N YE + + Sbjct: 73 IEFILASVEELDRSLEEGGGALIVLH----GDPVDAIPKLAAQLPVDAVFTNHDYEPSAI 128 Query: 118 RRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD+ + RL+ +F D V+ +LN + + V+TP++ A ++ L DL+ Sbjct: 129 ERDETVADRLRADGRRLLTFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFDLKP 188 Query: 177 LPVPA-------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 PV T + + P + + G A L F Y Sbjct: 189 YPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDFLTRIDSY 248 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 E+RD+PA +GTS LS +L G +S R + L GA +WL+ELIWR+ Sbjct: 249 A-ERRDLPAARGTSHLSVHLRFGTVSIRTL---ARLAHEMSLRPGGQGAATWLSELIWRD 304 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346 FY ++A +P + + F + + W AW G TG+P++DAAM QLN Sbjct: 305 FYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDAAMLQLNRT 364 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+MHNRLRM+TASFLVKDL +DWR GE YF +L D D ++NNGGWQWAASTG D+ P+F Sbjct: 365 GFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDAQPWF 424 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 RIFNP Q ++FD QG FI+ +LPEL VP ++IHAP + L +YP P+ Sbjct: 425 RIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAPWQADPDDLEDWGVVLGKDYPHPV 484 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H KA TL +Y + + Sbjct: 485 VEHAKARQQTLARYGVLRSR 504 >gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980] gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980 UF-70] Length = 595 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 161/475 (33%), Positives = 241/475 (50%), Gaps = 21/475 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR DN AL+ A ++A++I +P+ + H + + FI +L Sbjct: 112 VHWFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFILRTLEI 171 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L++ + + + + L+ N +YE++E+RR+ + + Sbjct: 172 LKRDLAELDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREARMVRDC 231 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R I D+ ++ PG + + + Y VYTP+ KA I ++ + A Sbjct: 232 AERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDAPGKNP 291 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F+ + M+P GE A L KF EK+ Y E Sbjct: 292 ASAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKINKYEE 351 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291 R+ P + TS LS + + G LS R ++ L G +W++E+ WR+FY Sbjct: 352 HRNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 411 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H++ +P VCM KPF P I W ++ QAW +G TG+PI+DAAMRQL G+MHN Sbjct: 412 KHVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHCGYMHN 471 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI SFL K LL+DWR+GE +FM L+DGD ASNNGGW + ASTG D PYFRIFNP Sbjct: 472 RCRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 531 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHK 464 +Q ++FD +G FIR W+PEL +V ++IH P YP IV+HK Sbjct: 532 LLQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFGDKVAAGVARKNGYPERIVEHK 586 >gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421] gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421] Length = 479 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 159/472 (33%), Positives = 228/472 (48%), Gaps = 8/472 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW R DLR+ DN AL+ A +V+AVFI P + + + +F+ S+L+ Sbjct: 3 SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK+ G + ++ L + +++N E RD + L Sbjct: 62 LQKAYRTIGGRLAVR----VGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +LL P + A + + Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEAPTV 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S A + + GEQ+ L L F +E +Y Y E+RD+P GTS+LS Sbjct: 178 EEQSFPELAQLGRPFAGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGTSRLSA 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + R W R + + + ++G W EL WREFY++ + P + G+P Sbjct: 238 HLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQLA-GRP 296 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F E +W++D + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL KDLL Sbjct: 297 FRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFLTKDLL 356 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + + GE YFM +L+DGDL++NNGGWQWAAS G D P RIFNP+ Q R+DP+ FIR Sbjct: 357 LPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPKAVFIR 415 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 WLPEL V T + Y PIV+HK+ +Y A + Sbjct: 416 RWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVR 467 >gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae] Length = 634 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 171/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W + DLR+ DN L A + +K ++AV+I +P+ W H +S + F S+ + Sbjct: 141 HWFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLL 200 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127 ++ L + I + + L L+ V +F N +YE +E R ++L+ L Sbjct: 201 KQELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMML 260 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D ++PPGS+ + Y VYTP+ +A I L Sbjct: 261 EKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPT 320 Query: 188 --------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + + ++P GE A+ L +F EKV Y + Sbjct: 321 GFREKFTKLFDSRVPDLPDCKSLTAEEKERFHHLWPAGEAAAIDRLERFLTEKVIKYKDT 380 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYR 292 R+ PA+ T ++S + + G L+ R ++ L K G W+ E+ WR+FYR Sbjct: 381 RNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEVAWRDFYR 440 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P VCM KPF IEW + +AW QG TG+PI+DAAMR L G+MHNR Sbjct: 441 HVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKHTGYMHNR 500 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 501 LRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPW 560 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSL--NYPLPIVDHKKACHH 469 Q ++FD QG FIR W+ EL +V IH P+ + ++ YP PIV+HK A Sbjct: 561 TQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVEHKFARER 620 Query: 470 TLNQYYA 476 L +Y A Sbjct: 621 CLARYKA 627 >gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1] Length = 464 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 210/475 (44%), Gaps = 23/475 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ D AA +D + F+ P A + +F+Y L + Sbjct: 4 STAVVWFRRDLRVADQPTFLAAADAADRALAL-FVLDPALLD--PSGAARRNFLYGCLRE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L G + D + + + Y RD+ +EK L Sbjct: 61 LDSAL---GGRLLVVK----GDPADVVPRVATAVGADTVHVAADYGPYGRERDEQVEKAL 113 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + PG + +KV+TPF +A ++ +A + + Sbjct: 114 TDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWMDP 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + D P GE A F E V Y QRD+PA +GTS + Sbjct: 174 SGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGTSGM 233 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G + PR DL + ++ E+ WREFY ++ P Sbjct: 234 SPYLKYGCVHPRTLLA-------DLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSARRN 286 Query: 306 P--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 L+ WK G TGFPI+DA MRQL WMHNR+RM+ ASFLVK Sbjct: 287 YDTGFDHLPLRTDEAAYDDLERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMVVASFLVK 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G +FM L+DGDLASN GWQW A +G D+ PYFRIFNP QG+RFDP G Sbjct: 347 DLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGERFDPDGD 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +VP + +H P K+ L YP +V+HK L +Y A K Sbjct: 407 YVRRWVPELADVPGKAVHQPWKL--KDGLPDGYPERMVEHKAEREEALARYEAVK 459 >gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 4b str. F2365] Length = 467 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 237/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC +D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQSLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum SL003B-26A1] gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum SL003B-26A1] Length = 480 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 226/484 (46%), Gaps = 24/484 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65 M+ LVW R DLRI DN AL+ A + V+ VF+ H + A +++ SL Sbjct: 1 MTT-LVWFRQDLRIADNPALFEAA--ARGSVLPVFVLDEGPGDNTHPLGAASRWWLHHSL 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L D + V + +NR YE + VRRD L+ Sbjct: 58 EALARDL----GRLVLLH----GDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKA 109 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182 L + ++ L P + +KV++P+ +A + V L P I Sbjct: 110 ALIAAGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAA 169 Query: 183 -RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + ++ GE A L F + + Y RD P + Sbjct: 170 GQAGDRLDDWRLRPTAPDWAAGWRDLWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSH 229 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LSP+L G +SPRQ R + + A +L E+ WREF HL+ +P + Sbjct: 230 VSRLSPHLHFGEVSPRQVVARTRFA-AGRTPGLERDADKFLAEIGWREFSHHLLYHFPRL 288 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + W S L W++G TG+P++DA MR+L G+MHNR+RM+ ASFL Sbjct: 289 PERNW-KSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFL 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK L +DWR+GE +F L+D DLA+N GWQW A +G D+ PYFRIF+P QG+RFDP Sbjct: 348 VKHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPG 407 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R W PEL +P ++HAP +L YP PIVDH A L Y Sbjct: 408 GAYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALAGYE 467 Query: 476 AAKK 479 A ++ Sbjct: 468 AVRR 471 >gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517] Length = 565 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 231/486 (47%), Gaps = 43/486 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + FI +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C LF N +YE++E+RR+ L + Sbjct: 160 LKSELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I +D + PG + + Y VYTP+ ++ + L Q V A + Sbjct: 220 TTQGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 187 PVTPSNIPRFFDY--------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD + M+P GEQ A LR+F EK Y Sbjct: 280 GDARKHFEDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRS 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R L L+ + Sbjct: 340 KRDFMSSQITSVLSPYFSCGALSARTA---------------PFIEAMKLCGLVITDVSS 384 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 385 ---------SMNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555 Query: 472 NQYYAA 477 +Y A Sbjct: 556 EKYKKA 561 >gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] Length = 432 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 158/479 (32%), Positives = 234/479 (48%), Gaps = 52/479 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 MK + + W R DLR+ DN LY A + V+ +FI + + Sbjct: 1 MKK-----LSVFWFRRDLRLEDNTGLYYALQQ-ETDVLPLFIFDRTILDDLEDKTDARVS 54 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI+ + +++ L +KG + E + + ++ NR YE +R Sbjct: 55 FIHDQIQNLKEELEKKGSTLLV----KYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKR 110 Query: 120 DKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D+ +EK + + I +F D V+ PG ILN + + YKV+TPF + + + ++ +L Sbjct: 111 DRAIEKLAEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALS 170 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P + + F+ + +E + YY + R+ PA Sbjct: 171 YFHWKNLYQTKPEPLISLKEMGFER---------SSISIPSSNPNEEIIKYYDKTRNFPA 221 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS+L +L G +S RQ + ++LNELIWREFY ++ + Sbjct: 222 ENGTSRLGIHLRFGTISIRQLALKAASLN-----------ETYLNELIWREFYMMILDYN 270 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V K F P ++I W + +AW +G TG+PI+DA MR+LN G+MHNR+RMI A Sbjct: 271 PQVVD-KAFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVA 329 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++F Sbjct: 330 SFLTKHLLIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKF 389 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D +I+ W+PE + YP PIVDHK A L+ Y A Sbjct: 390 DKDLKYIKKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429 >gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802] Length = 481 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 168/482 (34%), Positives = 243/482 (50%), Gaps = 17/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F + I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + Q + + +F+N E RRD+ + + L+ + Sbjct: 65 TYQKLGSNLLFIQ----GEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120 Query: 131 VICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183 I LL G I+ + + YKVYTPF K + +L L + Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLTQTELE 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V ++P + ++ P+ GE A L FC + Y EQR+ PAI+GT Sbjct: 181 QAKTVKIIDLPTVKELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSP L GV+ R W + + + +W EL WREFY+H + F+P + Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ + L QAW G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IR WLPEL ++ T+ + LS YP PIV+H + +Y K+ Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQTK 477 Query: 482 LL 483 + Sbjct: 478 SV 479 >gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161] gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a F6854] gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900] gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818] Length = 467 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 162/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + +E L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G + EL WR+ + +++ +P Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15] Length = 538 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 98/486 (20%), Positives = 179/486 (36%), Gaps = 23/486 (4%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ +VW + DLR D+ L AA + VI +++ + W+ S RQ FI Sbjct: 25 RIHMTT-VVWFKRDLRTRDHAPLVAAASLGE-PVIPLYVIEDDYWQLPDTSGRQWAFIRD 82 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + + L + G + + L +Q + ++F +++ + Sbjct: 83 SLDDLDRQLRKAGSQLLVIR----GSVTDALKKLQARQGIDRIFCHQETGGHWTFERDRA 138 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + + + + R+ +++ Sbjct: 139 VIGWCSENQVEFREWNQFGVVRRLSDRDVWDRAWTELMRQPVLEAPTAIPTSD------- 191 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-- 241 T + + G +L F + Y P Sbjct: 192 -TLKTDWAADNGQGFEVPDSCPDRQKGGSARGEKLLESFLDRRCVGYQYNISSPNTAVRA 250 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LSP+++ G +S R+ + K + L + K S+ + L W + + P Sbjct: 251 CSRLSPHIAYGTVSLREIYQEAKATGNHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEP 310 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + DS LQ W++G TG+P++DA+MR L GW++ R+R + + Sbjct: 311 ELEFRAMHREMEALKTGPNDSERLQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMA 370 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + WR + D + + Q +G + RI+NP +Q ++ D Sbjct: 371 IASYQLWLHWRDPALHLARLFTDFEPGIHYS--QTQMQSGLTGINALRIYNPVLQSQKLD 428 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYA 476 P+G FIR W+PEL VP++ IH P Y P+ DH++A Sbjct: 429 PEGEFIRRWIPELAGVPSEMIHTPWLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGD 488 Query: 477 AKKQSL 482 +KQS+ Sbjct: 489 FRKQSV 494 >gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max] Length = 634 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 220/484 (45%), Gaps = 23/484 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ V+I P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAK--EGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++ L + TK+ +N Y+ + RD ++++L + Sbjct: 65 SLKSLGSRLVLIKTHS---TVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L P + + + + + + F K + + P I G V Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKVE 181 Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + G +NA L +F ++ + Y ++R TS Sbjct: 182 ECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDSTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + + +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 K + + WN D+ + + W+QG TGFP++DA MR+L GW+HNR+R+I +S Sbjct: 302 -FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +FD Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G ++R WLPEL +PT++IH P +L NYP PI+D A + Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIEA 480 Query: 474 YYAA 477 + Sbjct: 481 IFKM 484 >gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002] Length = 477 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 242/480 (50%), Gaps = 17/480 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN AL A S AKV+ +F P + ++ + ++ A L ++ + Sbjct: 6 LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G Q + +E L +V +++N E +RD + L+ Sbjct: 65 NYQKAGSQLLIFQ----GNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQV 120 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183 ++F D +L PG + + + Y VY+PF K Q A + L + Sbjct: 121 GAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQK 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 L + +P D F P P+GE +L L +F + + Y R+ PA GT Sbjct: 181 LAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPATDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W + + ++G +W EL WREFY+H + F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W D QAW G TG+PIIDAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL++DWR GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IRHWLPEL+ + TQ + +YP PIV+H+ Y K ++ Sbjct: 419 ADYIRHWLPELSGLDTQVLLTGQIPRLLCQ-QHDYPEPIVEHRVRQREFKRLYKLVKDKA 477 >gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL N1-017] Length = 467 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQGF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQTLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans 91-118] Length = 472 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 221/480 (46%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G +S + LD Q +++NR+YE RD +++ Sbjct: 60 ALDGALRALGSGLVIRS----GNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRD 115 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180 L+ R I ++ L P + YKV+TPF + + L + A R P+P Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A T + + + + P GE A +L F + Y E RD P Sbjct: 176 ASLKTDALDTLQLVPGLQWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRDRPDRV 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSP+L G ++P + + L+ +++ +L WR+F HL+ +P Sbjct: 235 GTSQLSPHLHFGEIAPWRIASTLETHRTARNGAEI---DAYIRQLGWRDFAYHLLHHFPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASF Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 Q +I W+PEL + + AP + YP PI+ + L Y ++ Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRNPIIGLAEGRDAALAAYAKSR 471 >gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 500 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 221/480 (46%), Gaps = 17/480 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 29 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 87 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 88 ALDGALRALGSGLVIRS----GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 143 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180 L+ R I ++ L P + YKV+TPF + + L + A R P+P Sbjct: 144 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A T + + + + P GE A +L F + Y E RD P Sbjct: 204 ASLKTDALDTLQLVPGLQWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRDRPDRV 262 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTSQLSP+L G ++P + + L+ G ++ +L WR+F HL+ +P Sbjct: 263 GTSQLSPHLHFGEIAPWRIASTLEAHRTARNGAEIDG---YIRQLGWRDFAYHLLHHFPD 319 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASF Sbjct: 320 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 379 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 380 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 439 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 T+I W+PEL + + AP + YP PI+ + L Y ++ Sbjct: 440 HATYITRWVPELGKLAVKERFAPWLHPLALARFAPEYPRNPIIGLAEGRDAALAAYAKSR 499 >gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 426 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 224/428 (52%), Positives = 294/428 (68%), Gaps = 4/428 (0%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE Sbjct: 2 PRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEF 61 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 NE +RD +EK L IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + Sbjct: 62 NERQRDAAVEKTLPSV-ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIP 120 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQ 233 +P P IR++G ++ P +YP QA D FP+ E + LR FC + Y + Sbjct: 121 PCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASR 180 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD PA+ GTS+LS L+ G LSPRQC +RL E L WLNELIWREFYRH Sbjct: 181 RDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRH 238 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 LM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN GWMHNRL Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PIV+HK+A TL+ Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418 Query: 474 YYAAKKQS 481 Y AA+K + Sbjct: 419 YEAARKGA 426 >gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064] Length = 467 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 167/481 (34%), Positives = 235/481 (48%), Gaps = 27/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +F + P+ IGE+ A L F K V Y + RD P + TS LS Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+ + +++ +P Sbjct: 230 RYLRTGEISIRTIWQSLQETEA------TEGRATFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 Query: 481 S 481 S Sbjct: 463 S 463 >gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum IPO1609] Length = 522 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 161/489 (32%), Positives = 232/489 (47%), Gaps = 29/489 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178 L + F D V+ +LN + Y V+TP++ A + + D L Sbjct: 142 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G + + + + + L ++ Y +RD PA Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDFATRMDDYHARRDYPA 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 262 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 317 Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLRM Sbjct: 318 PDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 378 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARAA 497 Query: 470 TLNQYYAAK 478 TL +Y AK Sbjct: 498 TLERYAPAK 506 >gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway 5J108-111] Length = 452 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 161/445 (36%), Positives = 239/445 (53%), Gaps = 15/445 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W R DLR++DN AL A ++D +I ++I + + Q +++ SL Sbjct: 1 MTT-IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLS 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +LS+KG + D+ L + +V K+++NR YE D LE R Sbjct: 56 SLQTALSKKGTSLILKK----GDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENR 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183 L + + + ++L P I N + YK++TPF K + +L Sbjct: 112 LPPLSV-EIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRA 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + GE+NA +L+KF KE + Y RD P I TS Sbjct: 171 IKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPYL G +S RQ W + + + K+ +L +LIWREF +L+ +P + Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQDKNLQKAA-DVFLRQLIWREFAYYLLWHFPQMGK 289 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + +W K+ + L+AW++G TG+PI+DA MR+L G+MHNR RMI ASFLVK Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL++DWR GE++F + LLD DLA+N GWQW A G D+ PYFRIFNP +Q K+FDP GT Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD 448 +I+ W+PEL VP++YIH P D Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPD 433 >gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e] gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL R2-561] gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e] Length = 467 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + +E L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G + EL WR+ + +++ +P Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW++G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] Length = 472 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 194/472 (41%), Positives = 273/472 (57%), Gaps = 10/472 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLR DLR DN A V A+F+A P QWR HG + + F +L Sbjct: 1 MNT-LLWLRTDLRAHDNP--ALAAAAEAGTVTALFLAAPGQWRLHGDAPTKVDFWLRNLR 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + L + GI + ++ ++ + L +C + ++ N ++ +NE RRD + R Sbjct: 58 ELSRELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAAR 117 Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ + + L PG++L + Y+VYTP+ +A + L A LR+LP P + Sbjct: 118 LQALGVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTP 177 Query: 186 GPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P +P F+ P + ++P GE A L F + Y EQRD P++ T Sbjct: 178 PPWPADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPAT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYL+ GVLSP Q + K GA +W+NEL+WREFY+HL+A +PS+ Sbjct: 238 SCLSPYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLS 297 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 M +P P T + W L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL Sbjct: 298 MHQPMKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLS 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP Q ++FDP G Sbjct: 358 KNLLIDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 F+R WLPEL ++ ++ IH P YPL IVD ++ L + Sbjct: 418 VFLREWLPELAHLDSRAIHDPSPMERAQ---AGYPLAIVDLAQSRLRALEAF 466 >gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H] Length = 470 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 204/473 (43%), Positives = 283/473 (59%), Gaps = 13/473 (2%) Query: 11 LVWLRNDLRITDNKALYA-----ACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYA 63 L+WLRNDLR DN AL+ A D+ V A +F +QW+QH S + FI Sbjct: 2 LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + K L+ I + + NF +L SYC +T++ N + E NE +RDK L Sbjct: 62 HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121 Query: 124 EKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L+ I + + V++P G +LN + MYKV+TPF++A + + Q L ++ Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + N +I +P+ IL KF ++K+ Y RDIP+I+GT Sbjct: 182 KSSAVNKADNQEE----DQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL+ GV+SPR L + DLL+ S FSWLNE+IWREFYRHL+ +C Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +++ W+ D+ L AW QG TG+P++DAAMRQLN GWMHNRLRM+ ASFL Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR+GE+YFM L+DGDLASNNGGWQWAASTG D+ PYFRIFNP Q +RFDP+G Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FIR ++PELNN+ + IH PH ++ N+L++ +P IV+HK+A L Y Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWPA-IVEHKEARLKALAFYK 469 >gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp. sepedonicus] Length = 508 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 145/489 (29%), Positives = 229/489 (46%), Gaps = 24/489 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLR+DLR+ DN A++AA + ++ +++ E + +++ SL ++ + Sbjct: 25 IVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLHMSLSRLGE 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + + +D + + +NR+Y E+ D ++K L R Sbjct: 84 SLRGLGSPLVLRR----GKAADVVDDLVREVGAGAVLWNRRYGGAEIAVDTAIKKDLGDR 139 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 + L + P +++N + ++VYTPF K + A Sbjct: 140 GLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPDALEAPRKAPR 199 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + GE L L F ++ Y QRD PA TS+ Sbjct: 200 SDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTSR 259 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL G +SP Q W+R++ + + A +L+EL WREF HL+ P + Sbjct: 260 LSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPDLATR 319 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + L AW++G TG P++DA MR L G +HNR+RM+ ASFL+K+ Sbjct: 320 NFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASFLIKN 379 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++F L+D D A+N WQW A +G D+ PYFR+FNP +QG++FDP G + Sbjct: 380 LLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDPSGEY 439 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLPIVDHKKACHHTL 471 IR ++PEL + P +H P S YP PIVD K++ L Sbjct: 440 IRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAAYPSPIVDLKESRQRAL 499 Query: 472 NQYYAAKKQ 480 Y K + Sbjct: 500 AAYDEIKDR 508 >gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 484 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 151/485 (31%), Positives = 226/485 (46%), Gaps = 17/485 (3%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + MS +VW R DLR+ DN AL AA I ++I + + A + Sbjct: 8 RCRVCMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDALHEEGEWTPGAASRTWR 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L +G DS + LD Q +++NR+YE RD Sbjct: 67 HRSLAALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDA 122 Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLR 175 +++ L+ R I +S + ++L P + YKV+TPF + + L V A Sbjct: 123 QIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRS 182 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P+PA T + + ++ + P GE A +L F + Y E RD Sbjct: 183 LPPLPAALKTDALDTLQLVSSLNWDQGFWEHWQP-GEAGAHEMLEIFIDGALSGYRENRD 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P GTSQLSP+L G ++P + + L+ + + ++ +L WR+F +L+ Sbjct: 242 RPDRVGTSQLSPHLHFGEIAPWRIASTLEAH---RTARNCAEIDGYIRQLGWRDFAYYLL 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + D L AW++G TG PI+DA MRQL GWMHNR+RM Sbjct: 299 HHFPDTTNQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDHKKACHHTLNQ 473 ++FDPQ T+I W+PEL + + AP + YP P++ + L Sbjct: 419 EKFDPQATYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRTPVIGLAEGRDAALAA 478 Query: 474 YYAAK 478 Y ++ Sbjct: 479 YAKSR 483 >gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523] Length = 464 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 155/488 (31%), Positives = 236/488 (48%), Gaps = 34/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M V + W R DLR+ DN ALY A + I +FI Q I + Sbjct: 1 MSKK----VAIHWFRQDLRLADNPALYHASQADET--ITIFILDENQ----DIGGASKLW 50 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +SL+ K ++ + +E + + +VT ++NR Y+ + RD Sbjct: 51 LHHSLNNLNRSLNDK---LNFYN----GNPLEIIKKLIKENKVTDFYWNRCYDKYSINRD 103 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +++ LQ + I + + L + P YKVYTPF K LI+ V Sbjct: 104 TQIKQFLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAV 163 Query: 180 PAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + + P +Q I + +GE+ A +L +F K+ Y RD Sbjct: 164 FSRLIKLASSDTLDSLKLLEPKLTWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIARDY 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS LSPYL G +SP Q +N + L + ++ EL+WR+F + + Sbjct: 224 MSTDATSTLSPYLHFGEISPNQIFNAV-----QSLDSIGNNEEHFIKELVWRDFSYYQIY 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +YP K + W+ ++ LL+ W++G TG PI+DA MRQL G+MHNR+RMI Sbjct: 279 YYPE-LHNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q + Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +F+ +IR ++PEL +P + I P + L NYP PIVD K + Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSRDKA 456 Query: 471 LNQYYAAK 478 L + K Sbjct: 457 LQLHNQIK 464 >gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 220/475 (46%), Gaps = 13/475 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 1 MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G DS+ L + Q +F+NR+YE RD +++ Sbjct: 60 ALDAYLRSRGSSLVLRS----GDSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIR 183 L+ + I +S + S+L P I Q YKV+TP+ + ++ + + A Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + GE AL L F + Y EQRD+P GTS Sbjct: 176 VDSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++SP+L G ++P + + L+ G +L +L WR+F HL+ +P Sbjct: 236 RMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPT 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + L W++G TG PI+DA +R+L G+MHNR+RMI AS+L K Sbjct: 293 ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLCK 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 353 HLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQAR 412 Query: 424 FIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPL-PIVDHKKACHHTLNQYYA 476 +I W+PEL +P + AP L + YP P+VD L Y Sbjct: 413 YISRWVPELAALPVKARFAPWQHPLLLAAHAPGYPRTPLVDLAVGRDAALAAYRQ 467 >gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159] Length = 467 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 163/479 (34%), Positives = 243/479 (50%), Gaps = 21/479 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W+R DLR+ DN+A AA +++ +F+ P S R++ F++A+L Sbjct: 1 MTTVVWWVRRDLRLHDNQA-LAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L ++G + L + + T + RRD+ Sbjct: 60 SLDAALRRRGSRLIVR----AGRPEQVLPTVVRESGATLVMAEADGSPYARRRDE----A 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V + + S L P GSI + Y+VY+ FR+A + + + LP Sbjct: 112 VARSVPLQLVEGSTLRPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSPQDILPA---PPRL 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P A+ F E A L+ F + + Y +R+ G+SQLS Sbjct: 169 PPVPRLASEPIPESPLAVPERFAPSEDAARQRLQHFLAQGLASYHLRRNALDGSGSSQLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY G+LS R+ W + GA +WL+EL+WREFY+HL+A +P Sbjct: 229 PYFRFGLLSVREAWCAAARYLDEPDAAA--GARAWLDELLWREFYQHLLAAWPESARMSM 286 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + W + L W++G TGFP++DAAMRQL + GWM NR RMI ASFL K LL Sbjct: 287 -QPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSKLLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR GE +F +L+DGDLA+N GGWQW+A TG D+ PYFRIFNP +QG++ DP G+++R Sbjct: 346 VDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHDPNGSWVR 405 Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 WLPEL NVP +Y+ AP + +YP PIV+++ A L + + ++ Sbjct: 406 TWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYPAPIVEYESARARALEWFRSVRQ 464 >gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea] Length = 619 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 140/484 (28%), Positives = 223/484 (46%), Gaps = 28/484 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLTQSLKALGSELTLIKTH---NTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I +S++ +L P I + + + + K + V++ + P I Sbjct: 116 KEKLVERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLI 175 Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 LT T + + G NA IL +F ++++ Y + Sbjct: 176 PLTAAETVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNS 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 TS LSPYL G +S R+ + + + D + + A +L + R++ Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWMH Sbjct: 296 SRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ N Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDID 474 Query: 465 KACH 468 A Sbjct: 475 TARE 478 >gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067] Length = 471 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 231/476 (48%), Gaps = 25/476 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D +I +F PEQ+ S F ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + H F + + L+ + K+++NR +RD+ + Sbjct: 58 KQKLDK-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185 I + A YKV+TP+ K + + + L + T Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +GEQ A + L F KE + Y E RD P + TS L Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E +G ++ EL WR+ + +++ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 R ++ EL +P ++IH P + + +YP PIVDHK+ + +Y Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461 >gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3] Length = 519 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 147/479 (30%), Positives = 233/479 (48%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A +++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 29 SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 88 HGSLAGLDAALARHGGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQQQRDADA 143 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175 L+ L+ R + + L P +L + Y+V+T + +A ++ + A R Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203 Query: 176 SLPVPAIR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + P D+ D E AL L +F + Y Sbjct: 204 IAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGY 263 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELGWREF 323 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 443 PVAQGQKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVEH 501 >gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 133/490 (27%), Positives = 221/490 (45%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 66 SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P I + + + + + + ++ + P + G + Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182 Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + G +NA +L +F + Y + Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R+L Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG+ Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481 Query: 469 -HTLNQYYAA 477 +++ + Sbjct: 482 DDSISTMWQL 491 >gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. novicida U112] gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112] gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella tularensis subsp. novicida FTE] gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella novicida FTG] Length = 464 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + W R DLR+ DN ALY A + I +FI Q I + + Sbjct: 1 MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLW 50 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + SL K + +E + + +T ++NR Y+ + RD Sbjct: 51 LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176 +++ LQ I + + L + P YKVYTPF + + + Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 S + +Q I + IGE + IL +F KV Y RD Sbjct: 164 FSYLRKLNNSENLDSLKLLEPKHSWQNIIKQWQIGESASHQILEEFLNNKVKEYKTARDF 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS+LSPYL G +SP Q +N + L + ++ EL+WR+F + + Sbjct: 224 MSTDSTSKLSPYLHFGEISPSQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +YP K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q + Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +F+ +IR ++PEL +P + I P + L NYP PIVD KK+ Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456 Query: 471 LNQYYAAK 478 L + K Sbjct: 457 LQLHNQIK 464 >gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL B-59395] Length = 480 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 147/495 (29%), Positives = 211/495 (42%), Gaps = 42/495 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR++D +L AA +++ +AVF+ R A ++ F+ L Sbjct: 3 SPAIVWFRRDLRLSDLPSLSAAADRAESA-LAVFVLDDALVR--PSGAPRTTFLAGCLEA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L G D ++ + V + + + RD+ +E L Sbjct: 60 LDADL---GGRLLV----VSGDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + PG + A Y+V+TPF++A + + + + P L Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHSPALTGPDTVDWLDPD 172 Query: 188 VTPS-------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + A+ R ++ Y + R Sbjct: 173 SILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTSELDRYADDR 232 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + P + TS+LSPYL G L PR + L+ D GA + +EL WR+FY + Sbjct: 233 NRPDLDATSRLSPYLKFGCLHPRTILHDLRARTDD-------GATTLRSELAWRDFYADV 285 Query: 295 MAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + P E AW +G TG+PI+DA MRQL GWMHNR Sbjct: 286 LFHRPETARTGVDAKFDQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQLLAEGWMHNR 345 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RMI ASFL KDL + W G YFM+ L+DGDLASN GWQW A G D+ PYFR+FNP Sbjct: 346 VRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPV 405 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----------WLDKNDLSLNYPLPIVD 462 QG+RFDP G ++R W+PEL + + +H P D D YP PIVD Sbjct: 406 SQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDGDRGYPPPIVD 465 Query: 463 HKKACHHTLNQYYAA 477 H + L +Y Sbjct: 466 HAEERVVALARYRDL 480 >gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis DSM 5305] Length = 502 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 238/483 (49%), Gaps = 23/483 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ DN ALYAA N+ VI V++ P + S +++ SL + Sbjct: 28 LVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLL-PNRNDDWFPGGAASWWLHHSLDALTT 85 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129 +L ++ + + + +F+NR YE + RD+ +L Q Sbjct: 86 NLHKRHHQLILRS----GSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADKLAQA 141 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPVPAIRL 184 +SF S+L+ P ++ Y+V+TPF KA + A Sbjct: 142 GYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPESLKTPDQWPD 201 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + D+ + + P GE A +KF + + Y +RD+P+ GTS+ Sbjct: 202 SEELADWKLLPTLDWADEFPERWKP-GEDAAHAAWQKFLDDNIAEYGTERDVPSHHGTSR 260 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSP+L G +SPRQ + E+ + +L+E+ WREF H++ +P Sbjct: 261 LSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSEIGWREFGYHVLYHFPHT 320 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P W L+AW+QG TG+PI+DA MR+L GWMHNR+RMI ASFL Sbjct: 321 PE-NPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNRVRMIVASFL 379 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL + W G ++F L+D DLA+N GWQWA+ G D+ PYFR+FNPT Q ++FDP+ Sbjct: 380 TKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPTRQSEKFDPK 439 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475 G ++R W PEL ++P +Y+H P + L +YP PIVDH + L ++ Sbjct: 440 GNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIVDHAEQRDAALAEWE 499 Query: 476 AAK 478 K Sbjct: 500 KVK 502 >gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548] gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1] Length = 464 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + W R DLR+ DN ALY A + I +FI Q I + + Sbjct: 1 MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLW 50 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + SL K + +E + + +T ++NR Y+ + RD Sbjct: 51 LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176 +++ LQ I + + L + P YKVYTPF + + + Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 S + +Q I + IGE + IL +F KV Y RD Sbjct: 164 FSYLRKLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS+LSPYL G +SP Q +N + L + ++ EL+WR+F + + Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +YP K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q + Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +F+ +IR ++PEL +P + I P + L NYP PIVD KK+ Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDRA 456 Query: 471 LNQYYAAK 478 L + K Sbjct: 457 LQLHNQIK 464 >gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801] Length = 481 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 164/482 (34%), Positives = 235/482 (48%), Gaps = 17/482 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A S +KV+ +F Q+ I+ + ++ L ++Q+ Sbjct: 6 LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + Q + + +F+N E RRD+ + + L+ + Sbjct: 65 TYQKLGSNLLFIQ----GEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120 Query: 131 VICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPVPAI 182 I LL G I+ + + YKVYTPF K + + Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + GE A L FC + Y EQR+ PAI+GT Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSP L GV+ R W + + + +W EL WREFY+H + F+P + Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W+ + L QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IR WLPEL ++ T+ + LS YP PIV+H + +Y K+ Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQTK 477 Query: 482 LL 483 + Sbjct: 478 SV 479 >gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group] Length = 651 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 133/490 (27%), Positives = 221/490 (45%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 66 SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P I + + + + + + ++ + P + G + Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182 Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + G +NA +L +F + Y + Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R+L Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG+ Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481 Query: 469 -HTLNQYYAA 477 +++ + Sbjct: 482 DDSISTMWQL 491 >gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489] Length = 429 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 144/473 (30%), Positives = 213/473 (45%), Gaps = 51/473 (10%) Query: 7 MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS + + W R DLRI DN AL A + + V+ VFI + + FI+ + Sbjct: 1 MSDKISVFWFRRDLRIEDNTALCNALKSGN-PVLPVFIFDENILNELDADDARVTFIHKT 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + +L + + V ++F+N+ YE RD+ + Sbjct: 60 ISAINLTLKEYNSGVLCLHTT----PELAWKKIVSTYNVERVFFNKDYEPYARERDQKIT 115 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L + I KS DSV+ +L + Y VYTP++ + Sbjct: 116 SFLNDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFTP------------ 163 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + +G + + + E + Y E+RD P+ T+ Sbjct: 164 DLIEDKKCDFKGKLLEFNVDFPSLENLGFSASNITVEPYNLEHLDIYAEKRDFPSDDITT 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L P+L G +S R+ L +L+EL+WREF+ ++ +P V Sbjct: 224 YLGPHLRFGTVSVRKLIRGLDGLES-----------VFLSELVWREFFTQILFHFPKVVT 272 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I+W + + W G TG+P++DA MRQLN G+MHNR+RMITA FL K Sbjct: 273 QN-FRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCK 331 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DW+ GE YF +LLD +LASNNG WQWAA TG D+ PYFRIFNP Q K+FD Sbjct: 332 HLLIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFK 391 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +++HW+PEL+ NYP P+V+HK A L Y Sbjct: 392 YVKHWIPELD-------------------GFNYPQPMVEHKAARERALKVYKE 425 >gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14] Length = 476 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 220/481 (45%), Gaps = 14/481 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MKA SV LVW R DLR+ DN AL AA + +V+ V+I P + + A + Sbjct: 1 MKAMHV-SVALVWFRRDLRLQDNPALQAALE-AGHEVVPVYIHAPHEEGEWVPGAASDAW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L +G DS+ L + Q +++NR+YE RD Sbjct: 59 RHRSLAALDADLRSRGSSLVLRH----GDSLATLQALVEQIGAEAVYWNRKYEPATQPRD 114 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSL 177 +++ L+ I +S + S+L P I Q YKV+TP+ + ++ + Sbjct: 115 AEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAAPK 174 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + A + G + GE AL L F + Y EQRD+P Sbjct: 175 ALTAHKADGLALDELRLAPTLDWDSGFWQHWRPGEAGALEALSVFEDGALRGYREQRDLP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS++SP+L G ++P + + L+ G +L +L WR+F HL+ Sbjct: 235 DRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHH 291 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + L W++G TG PI+DA +R+L G+MHNR+RMI Sbjct: 292 FPKTPTDNLNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 351 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+L K L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++ Sbjct: 352 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 411 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKACHHTLNQYY 475 FDPQ +I W+PEL +P + AP + YP P+VD L Y Sbjct: 412 FDPQARYISRWVPELAALPVKARFAPWQHPQLLAAHAPGYPRTPLVDLAVGRDAALQAYR 471 Query: 476 A 476 Sbjct: 472 Q 472 >gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia solanacearum MolK2] Length = 522 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 232/488 (47%), Gaps = 29/488 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178 L + F D V+ +LN + Y V+TP++ A + + D L Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G + + + + + L ++ Y +RD PA Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAKALLDDFATRMDDYHARRDYPA 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R L ++ GA +WL+ELIWR+FY ++ Sbjct: 262 VRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHHR 317 Query: 299 PSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W + AW+ TG+P++DAAM Q+ G+MHNRLRM Sbjct: 318 PDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL+KDL VDWR GE YF L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 378 VAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H A Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPQPIVEHAAARAA 497 Query: 470 TLNQYYAA 477 TL +Y A Sbjct: 498 TLERYAPA 505 >gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171] Length = 471 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 231/476 (48%), Gaps = 25/476 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D +I +F PEQ+ S F ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + H F + + L+ + K+++NR +RD+ + Sbjct: 58 KQKLDK-----IAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185 I + A YKV+TP+ K + + + L + T Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +GEQ A + L F KE + Y E RD P + TS L Sbjct: 173 ILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E +G ++ EL WR+ + +++ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 R ++ EL +P ++IH P + + +YP PIVDHK+ + +Y Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461 >gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 GAS] gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005] Length = 469 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 243/483 (50%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L +GI + D + + Q T +++N RD+ + Sbjct: 59 RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L I+N + Q YKV+TP+ + + ++ L Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + A L +F ++++ Y RD PA GTS+LS Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L IG + R ++ +++ L G ++L EL WR+FY + YP +P Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK++ Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AKI 468 >gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10] Length = 505 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 157/497 (31%), Positives = 247/497 (49%), Gaps = 23/497 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + + Sbjct: 1 MSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYLDDTGEGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGSLAALDAALARHGGRLLLLR----GDAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174 L+ L+ R +S + S+L P ++ A ++++T + +A+ ++ + Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRDRTVAAPLPEPE 175 Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 R P R T + P D+ D E A L F + Sbjct: 176 RIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFLVK LL+DWR+GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L+L+YP PIVDH Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIVDH 474 Query: 464 KKACHHTLNQYYAAKKQ 480 A L+ K+ Sbjct: 475 DGARRRALDALATLPKR 491 >gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054] gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424] gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia AU 1054] gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia HI2424] Length = 519 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 145/479 (30%), Positives = 230/479 (48%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A +++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 29 SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ + D+ ++ +++NR+Y + D Sbjct: 88 HGSLAGLDAALARHDGRLLLLR----GDAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 143 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175 L+ L+ R + + L P +L + Y+V+T + +A ++ + A R Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203 Query: 176 SLPVPAIR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + P D+ D E AL L F + Y Sbjct: 204 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 263 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 323 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 P QG++ DP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 443 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 501 >gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp. lyrata] Length = 612 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 135/497 (27%), Positives = 225/497 (45%), Gaps = 32/497 (6%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MTTDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTFIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + ++ + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA IL +F ++++ Y + Sbjct: 176 PITAAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH---HTLNQYYAA 477 + A +++ A Sbjct: 475 ETARELLARAISRTREA 491 >gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110] Length = 476 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 157/484 (32%), Positives = 245/484 (50%), Gaps = 19/484 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ + + W R DLR++DN L A S +K++ +F + I+ + +++ L Sbjct: 1 MTNIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +QKS + G Q + + + V +F+N E RDK +++ Sbjct: 60 QHLQKSYQKLGSQLLIFQ----GEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKE 115 Query: 126 RLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---- 179 L+ + I P + YKVYTPF ++ ++ + S+ Sbjct: 116 ALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESL 175 Query: 180 --PAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDI 236 I + ++P D + P+ GE A L F +Y Y EQR++ Sbjct: 176 SDEEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRNL 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PAI TS+LSP G++ R+ W ++ + + +W E+ WREFY+H + Sbjct: 236 PAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCL 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F+P + G P+ ++ W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RM Sbjct: 296 YFFPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 355 IVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +++DP G +IR W+PE++++ T+ + S YP PIVDHK+ +Y Sbjct: 414 QKYDPDGEYIRLWVPEISSLDTECLVT-GKIPPLEAHSCGYPQPIVDHKQQQREFKERYK 472 Query: 476 AAKK 479 K Sbjct: 473 RIKN 476 >gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group] gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group] Length = 651 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 133/490 (27%), Positives = 223/490 (45%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 66 SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P I + + + + + + ++ + A P + + G + Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182 Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + G +NA +L +F + Y + Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R+L Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG+ Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 422 KYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECL 481 Query: 469 -HTLNQYYAA 477 +++ + Sbjct: 482 DDSISTMWQL 491 >gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S] Length = 467 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 163/480 (33%), Positives = 233/480 (48%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + +E L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G + EL WR+ + +++ +P Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP PIVDHK+ + +Y +K+ Sbjct: 403 EYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462 >gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480] Length = 591 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 163/486 (33%), Positives = 237/486 (48%), Gaps = 47/486 (9%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN++L+ A N D +I ++I +PE H S + I +L Sbjct: 100 VHWFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAI 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L ++ I D + + C Q ++F N +YE++E+RR+ + + Sbjct: 160 LKSDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLC 219 Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +I + DD+ ++ PG + + Y VYTP+ ++ + L++ V A Sbjct: 220 ARQGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPTRNA 279 Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + F Q M+P GE A L++F ++ Y E Sbjct: 280 GDARKHFEELFHSQVPEAPTYMQLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYHE 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 RD + Q TS LSPY S G LS R +E Sbjct: 340 NRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEAN------------------------- 374 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +P +CM K P +EW D AW +G TGFPI+DAAMRQL WMHNR Sbjct: 375 ---VHWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHNR 431 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR+GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 432 TRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 491 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL N+ IH P+ + N YP PIV+H ++ L Sbjct: 492 RQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKAL 551 Query: 472 NQYYAA 477 +Y A Sbjct: 552 ERYKKA 557 >gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20] Length = 478 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 169/483 (34%), Positives = 234/483 (48%), Gaps = 23/483 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW+R D RI DN AL AA NSD+ V+ VFI PEQ S QS F +AS Sbjct: 3 KVSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETT-ASLNQSAF-FASAKA 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 Q +L+ + I + + E L + + ++ + + + + Sbjct: 60 FQANLANENIHLLVLKGTPESQ-FEKLTAALPEISDLYFNFDERGYGRQRDQQVAHHCQT 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ D L I Y+++TP+ K I +++ Sbjct: 119 TLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQGKQMA 178 Query: 188 VTPSNIPRFFDYPFQAIDPMF------PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 I+ +GE AL L+ F + + Y QRD+P + Sbjct: 179 NIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLPFLDA 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS YL G ++ R + + E G +++ EL WR++Y + A P Sbjct: 239 TSHLSRYLRTGEIAIRTIYQAVINEPESE------GQQTFIKELAWRDYYNMIYAMNPQQ 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +KI W + + W+ G TGFPI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 293 NT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+DWR GE+YF QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FDP Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G FI+ ++PEL+ + IH P D L +YP P+V HK+A + Y Sbjct: 412 GKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYE 471 Query: 476 AAK 478 +K Sbjct: 472 QSK 474 >gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] Length = 479 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 238/487 (48%), Gaps = 19/487 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + L W R DLRI DN L AA S +KV+ VF P + ++ + ++ SL Sbjct: 1 MSDLVLFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q+ Q G D ++ + +F+N E RD+ + Sbjct: 60 QELQQRYVQAGSQLLILH----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILD 115 Query: 126 RLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ + I D +L P I + + Y VYTPF K + +L Sbjct: 116 ILKDKGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGL 175 Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P F D + GE A L +F + + Y EQR+ Sbjct: 176 TESEQELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNF 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA+ GTSQLS L GV+ R W L+ + + +W EL WREFY+H M Sbjct: 236 PAVDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAM 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + G + + W + QAW++G TG+PI+DAAMRQ+N GWMHNR RM Sbjct: 296 YNFPELADG-AYRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRM 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 355 IVASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++FDP +IR W+PEL ++ T+Y+ ++ Y PIVDH+K +Y Sbjct: 414 QKFDPDAEYIRRWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQ 472 Query: 476 AAKKQSL 482 K SL Sbjct: 473 QQKATSL 479 >gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 217/485 (44%), Gaps = 29/485 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPV 179 +++L I + L P I + + ++ + K + +++ + Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175 Query: 180 PAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P V +I + + G NA IL +F ++++ Y + Sbjct: 176 PISTAAEAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes str. Manfredo] Length = 469 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 172/483 (35%), Positives = 241/483 (49%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L +GI + D + + Q T +++N RD+ + Sbjct: 59 RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L I+N + Q YKV+TP+ + + ++ L Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + A L +F ++++ Y RD PA GTS+LS Sbjct: 175 ETPDDVLRTVESIKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L IG + R ++ +++ L G ++L EL WR+FY + YP +P Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP Q KRFDP+G FI+ Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK++ Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AKI 468 >gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255] Length = 519 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 98/494 (19%), Positives = 181/494 (36%), Gaps = 28/494 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK T ++++VW + DLR D+ L A + ++ +++ P+ W+ S + HF Sbjct: 1 MKRTLD-AINIVWFKRDLRTNDHAPLLNASQQ-NTPILPIYVVEPDYWKTESSSRKHWHF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 IY L+ + L+ G D ++ + ++ + + Sbjct: 59 IYDCLVDLNNELNDLGQPLIVQT----GDVVDIFIQISEIFDIKNIYSHEETGNMWTYER 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K+ P ++ K + + + Sbjct: 115 DKRV----QVWCKKNAIGQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPD----YI 166 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + I + G A+ L+ F E+ Y+ P Sbjct: 167 NPIKKNVYSTIPNKDDELFGTPIIGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKS 226 Query: 241 --GTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREFYRHL 294 S+LS +L+ G LS R+ +K+ D ++ + L WR + Sbjct: 227 EKYCSRLSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQK 286 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P++ + + + D + AW +G TG+P +DA MR L + GW+ R+R Sbjct: 287 IESQPNIETHCMHSAFESLRKIDPDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMR 346 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + SF L +DWR+ Y D + + Q +G + R++NP Q Sbjct: 347 AMLVSFASYQLWIDWRLSGNYLAKLFTDFEPGIHFS--QLQMQSGVTGINAMRVYNPIKQ 404 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACH 468 D G FI+ W+PEL ++P ++IH P + + + +YP PIVDH+ Sbjct: 405 SIEHDINGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEAR 464 Query: 469 HTLNQYYAAKKQSL 482 + +K L Sbjct: 465 IAKQKISNVRKNEL 478 >gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC 12755] Length = 473 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 162/485 (33%), Positives = 248/485 (51%), Gaps = 28/485 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A ++ +++ VF +Q+ S + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLPDAPS---HDYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123 + +++ ++ + + E D ++L++N +RD + Sbjct: 58 VAHFIEAVKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGYGRKRDLYI 113 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ ++ + + + P + YK +TP+ K IQ + Sbjct: 114 KELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEK 173 Query: 183 RLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + D +GE A L+ F ++++ Y + RD+P+ Sbjct: 174 AAHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPS 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I+GTS+LSP+LS G +S R+ W + + P +G ++L EL WR+ + H++ F Sbjct: 234 IKGTSRLSPFLSFGQISIRKVWAACQ------GMPPSTGKATFLKELAWRD-FYHMIYFT 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I ++W KD W+ G TG+PIIDAAMRQLN GWMHNRLRMI A Sbjct: 287 HPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+F Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D +GT+I+ ++PEL +P ++IH P+ D+ L +YPLPIVDH +A L+ Sbjct: 407 DKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALD 466 Query: 473 QYYAA 477 Y Sbjct: 467 LYSKI 471 >gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium HTCC2181] Length = 465 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 162/476 (34%), Positives = 244/476 (51%), Gaps = 23/476 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQK 70 +W R DLR+ DN AL+ A SD V VFI ++ FI+ +L +++ Sbjct: 1 MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL+ D I + + LF+N+ YE +RD + + +Q Sbjct: 60 SLNSLSSDITVIH----GDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQS 115 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186 F D+VL IL+ A + Y V++P++ + L Q + + + Sbjct: 116 SADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAKI 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + + L ++++ Y +RD P +G S LS Sbjct: 176 KIEKLLSLDSLGFTKTNLSKLAIPTGSSGGRSLLLDFEKRIDQYKLKRDYPGKKGVSYLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + G +S R+ + + + K G+ WLNELIWR+FY +++ +P + GK Sbjct: 236 VHNRFGTISIRE-------QALIAINKQSEGSLVWLNELIWRDFYFQILSNFPHINDGKS 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P ++ + + +AWK G TGFPIIDAAM QLN G+MHNRLRMI ASFLVKDLL Sbjct: 289 FKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLRMIVASFLVKDLL 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q ++FDP+G FI+ Sbjct: 349 IDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQSEKFDPEGLFIK 408 Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476 +LP+L + + IH PH + +K+ L +YP PI+DH L+ Y A Sbjct: 409 KYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQKALSMYQA 464 >gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315] gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1] Length = 469 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 243/483 (50%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNNEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L +GI + D + + Q T +++N RD+ + Sbjct: 59 RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L I+N + Q YKV+TP+ + + ++ L Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + A L +F ++++ Y RD PA GTS+LS Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L IG + R ++ +++ L G ++L EL WR+FY + YP +P Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK++ Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AKI 468 >gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252] Length = 486 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 219/481 (45%), Gaps = 16/481 (3%) Query: 7 MSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M + L+ DLR+ +N AL AA ++ +FI R A + +++ SL Sbjct: 1 MPITLLLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + L ++G D E L V L +N +E R + Sbjct: 60 AALDAELQRRGSRLILRVAE---DPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAP 116 Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPV 179 L+ R I L + + +Y+V+TPF KAL Q + R Sbjct: 117 VLRRRSIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYIPPAPFLPPARIPAP 176 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + D+ + I + GE A LR F + +Y RD Sbjct: 177 SSWPDSDTLESLALLPRPDWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQ 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + TS+LSPYL+ G +SP W + E + ++ +L WREF +L+ +P Sbjct: 237 EATSKLSPYLANGEISPHLLWRVVGEAQRAGVSSK--AVEAFRRQLAWREFGYYLLYHFP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P P W ++ L+AW+ G TG P+IDAAMRQL GWMHNR R++ AS Sbjct: 295 E-TTHRPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L K+L + W G E+F L+D DLA+N GWQW A G D+ PYFRIFNP +Q K+FD Sbjct: 354 LLTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFD 413 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAA 477 P+G +IR WLPEL +P IHAP ++ + YP PIV + L Y Sbjct: 414 PEGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALYENW 473 Query: 478 K 478 K Sbjct: 474 K 474 >gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] Length = 489 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 150/493 (30%), Positives = 222/493 (45%), Gaps = 22/493 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52 M A + L W R DLR TDN+ L AA + V AVF E Sbjct: 1 MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--H 58 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F+ +L +++ G D L + T++ +N Y Sbjct: 59 AAPPRVAFMLDALAALRERYRDLGSDLIVRH----GDPAAVLPAVANDLDATRVVWNHDY 114 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKAL---IQN 168 RD + L + + + PG I +A Y VYT F + +N Sbjct: 115 SGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKN 174 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + + A +P + + + +Y Sbjct: 175 PPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIY 234 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIW 287 Y ++RD P + TS+LSP+L G + R + + D + +++ +L W Sbjct: 235 RYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAW 294 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFY ++ F + + F + IEW D LQAWK G TG+PI+DA MRQL Sbjct: 295 REFYAQVLYFN-QNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEA 353 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNR+RMI A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYFR Sbjct: 354 YMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFR 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKK 465 +FNP QG+R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH + Sbjct: 414 VFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQ 473 Query: 466 ACHHTLNQYYAAK 478 + + A+ Sbjct: 474 RREDAIAMFERAR 486 >gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum marinum IMCC1322] Length = 515 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 112/487 (22%), Positives = 188/487 (38%), Gaps = 36/487 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+VW + DLR+ D+ L AA V+ +++ P W Q +S R F+ +L + Sbjct: 1 MHVVWFKKDLRVWDHAPLVAASAA--GAVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---LLEK 125 +SL++ G + D L + +T L+ + + Sbjct: 59 DESLTKLGQPLVIY----AGDMPSVLAGIHQKYGITALYSHEETGNGWTYARDLAVQEWC 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + H + V P S A + K+ +L ++ +P+P+ Sbjct: 115 KDHHCPWHEFAQYGVHRPLRSRRGWAGKWDKMMQADVVPAPDHLSSVGIKGVPLPSASAL 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243 G V + G A+ +L+ F + Y + P S Sbjct: 175 GLVD------------DECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVTAADSCS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L+ G +S R+ + + + + +W N L E H + Sbjct: 223 RLSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCHFMQKLE 282 Query: 304 GKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P I + + A W +G TG+P++DA MR L GW+ R+R Sbjct: 283 DEPAIEFRPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWLTFRMRA 342 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +T SF L +DWR + +D + + Q +G + RI+NP Q Sbjct: 343 MTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYS--QCQMQSGITGINTIRIYNPIKQS 400 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + DPQG FIR W+PEL ++ IH P D+ +YP PIVD K A Q + Sbjct: 401 QDQDPQGIFIRRWVPELRHISDNLIHTPWIRPDQA---PDYPAPIVDEKIARKSASQQMH 457 Query: 476 AAKKQSL 482 +K S+ Sbjct: 458 DIRKSSM 464 >gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 499 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 112/482 (23%), Positives = 201/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I E W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ + + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + D G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ GV+S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK G TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P SL+YP P +D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3 [Canis familiaris] Length = 613 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia vietnamiensis G4] Length = 505 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 141/492 (28%), Positives = 220/492 (44%), Gaps = 31/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R+D R+ DN AL A V+ V++ + Q +++ SL ++ Sbjct: 14 VVWFRDDQRLADNPALTHALDTGH-PVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDD 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + E + + + +NR+Y + D +++ L R Sbjct: 73 ALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLIDR 128 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S + L P ++ ++V++ + +A ++ + IR Sbjct: 129 GIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPA 188 Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + GEQ A L F + + Y RD PA Sbjct: 189 HATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAA 248 Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + TS+LSPYL G +S RQ W V + +L+E+ WREF Sbjct: 249 RATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKFLSEIGWREFS 308 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 HL+ + F + + W D+ L+ W+ G TG+P++DA MR+L GWMHN Sbjct: 309 YHLLYHFA-PLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHN 367 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RM+ ASFL K LL+DWR GE +F L+D D ASN WQW + +G D+ PYFRIFNP Sbjct: 368 RVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNP 427 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465 +Q ++FDP G + R W+PEL + +HAP + L +YP+PIVDH+ Sbjct: 428 VLQAQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQC 487 Query: 466 ACHHTLNQYYAA 477 A L Sbjct: 488 ARARALESVKRL 499 >gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429] gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096] Length = 480 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 245/490 (50%), Gaps = 25/490 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + M V ++W R DLRI D KAL A S + + VF EQ S QS FI Sbjct: 7 RKGSVM-VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120 S+L +K L +GI + D + + Q T +++N RD Sbjct: 64 T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + I L I+N + Q YKV+TP+ + + ++ Sbjct: 119 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 178 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + + + + A L +F ++++ Y RD PA Sbjct: 179 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L IG + R ++ +++ L G ++L EL WR+FY + YP Sbjct: 237 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI AS Sbjct: 291 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 349 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL DWR+GE++F QL+D D ASN GGWQWAASTG D+VPYFR+FNP Q KRFD Sbjct: 350 FLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + + Sbjct: 410 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAK 469 Query: 474 YYAAKKQSLL 483 Y AK+++ + Sbjct: 470 YEWAKEKAKI 479 >gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4] gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus pseudofirmus OF4] Length = 479 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 165/477 (34%), Positives = 236/477 (49%), Gaps = 25/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R D R+ D+ AL A K +A F P + + + + +++Q Sbjct: 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L G + + L ++ + ++ N + RD+ E L Sbjct: 67 KQMLKTNGGDLYIITGTIEGALSKLLQAF---PEIDAVYANDDRVGDGRLRDEAAEHFLA 123 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + P +L YKV+TP+ KA + + + Sbjct: 124 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 183 Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + + + IGE++A+ L+ F K+++ Y RD P+I GTS+ Sbjct: 184 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 243 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ G +S R + + D A ++L EL WR+FYR + + P C Sbjct: 244 LSPYIKTGAVSSRSIYYHILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKD 297 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + ++ W+ D L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KD Sbjct: 298 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 357 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YF L+D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+ Sbjct: 358 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 417 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 IR ++PELN+VP YIH P + K L +YPLPIVDH K L+ + Sbjct: 418 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 474 >gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC20] Length = 473 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 245/485 (50%), Gaps = 28/485 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M++H++W R DLR+ DN AL A + ++ VF +Q+ S + +++ Sbjct: 1 MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPS---HDYFFSA 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123 + K+ ++ + + E D ++L++N +RD + Sbjct: 58 VAHFIKAAKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGFGRKRDLYI 113 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ ++ + I + P + YK +TP+ K IQ + Sbjct: 114 KELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEK 173 Query: 183 RLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P + D +GE A L+ F ++++ Y + RDIP+ Sbjct: 174 SVHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPS 233 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I+GTS+LSP+LS G +S R+ W + + +G ++L EL WR+ + H++ F Sbjct: 234 IKGTSRLSPFLSFGQISIRKVWAACQ------GMPSSTGKATFLKELAWRD-FYHMIYFS 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I ++W K+ L W+ G TG+PIIDAAMRQLN GWMHNRLRMI A Sbjct: 287 HPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+F Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 D GTFI+ ++PEL +P ++IH P+ D+ L +YPLPIVDH +A L+ Sbjct: 407 DKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALD 466 Query: 473 QYYAA 477 Y Sbjct: 467 LYSKI 471 >gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 462 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 156/475 (32%), Positives = 231/475 (48%), Gaps = 21/475 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR+ DN+ L A + + +F+ + + F+ +L + Sbjct: 1 MRIHWHRRDLRVADNRGLADA----PGRPVGLFVFDEAVLD--HAAPPRVAFLLDALSSL 54 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + +G + D L + V + +NR Y RD + L Sbjct: 55 RAAYRDRGSELFIRR----GDPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADVLD 110 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + F D++ PPG+I +A Y VY+ F K P L Sbjct: 111 EVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKWRDREKDDP-----YPVPALADA 165 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +P D F P G A L F ++ +Y Y E RD PA + TS+LS Sbjct: 166 TDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L G + R +++E + A + ++L WREFY H++AF P V Sbjct: 226 ADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVTEN 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I+W D LL AWK+G TG+PI+DA MRQL +MHNR+RMI ASFL KDL Sbjct: 286 -YKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTKDL 344 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR G +F +L+D D A++NGGWQWAASTG D+ PYFRIFNP QG+R+DP +I Sbjct: 345 LIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL+ V IH+ H + + + YP P+VDH + L+ + A+ Sbjct: 405 REYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459 >gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 674 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 223/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAA 477 +Q + Sbjct: 492 SQMWQL 497 >gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 179/479 (37%), Positives = 266/479 (55%), Gaps = 14/479 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS LVWLR DLR + N A+ A + ++ V AV+ T +QW ++ ++ + IY L+ Sbjct: 1 MS-ALVWLRTDLRSSWNSAIDYAVASHES-VSAVYFVTQKQWSKYNMANSKIALIYQRLV 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L ++ I Q ++ E L C++ VT ++ N +YE +E +RD ++ Sbjct: 59 SLQEELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNS 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + L + + + YKV+TP+ K ++ ++ + T Sbjct: 119 LNKMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQLPGVPEKCSANDT 178 Query: 186 GPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + ++ + + P +P + F E Y + RDI Sbjct: 179 GLKHSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNRDI 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+I+GTS++SPYLSIG LSPRQC + +E+ + + P+ GA++W+ E+ WR+FYR++M Sbjct: 239 PSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYVMF 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P V G PF + +W + AWK G TG+PI+DAAM L GWMHNRLRMI Sbjct: 299 HFPHVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLRMI 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASF K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q + Sbjct: 359 VASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSE 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 RFDPQG FI+ WLP+L ++ + +H P D L Y LPIV+HK + T Q+ Sbjct: 419 RFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQRLG--YALPIVEHKASVARTKAQFK 475 >gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 134/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T +VW R DLRI DN AL AA + V VFI PE+ Q + Sbjct: 1 MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + +++ + TK+ +N Y+ + RD Sbjct: 54 MKQSLAHLSQSLKALGSDLTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L R I + L P I + + + + K + +++ + P Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 + +T + + + + G NA +L +F ++++ Y Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 + TS LSPYL G +S R + + + D + + A +L + Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE+ R++ +P + + W+ D +AW+QG TG+P++DA MR+L Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWAT 349 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 R+ NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PI Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469 Query: 461 VDHKKACH 468 VD A Sbjct: 470 VDIDTARE 477 >gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6] Length = 500 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 23/496 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A ++++ +VW R+DLR+TD AL A S ++ V++ + + Sbjct: 1 MSAKSSVAPAIVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ +L + +L++ G + D+ ++ +++NR+Y + D Sbjct: 60 LHGALAALDAALARHGGRLLLLR----GDAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADL 174 L+ L+ R +S + S+L P ++ A ++V+T + +A+ ++ + Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175 Query: 175 RSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 R P R T + P D+ D E A L F E + Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WRE Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWM Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIF Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463 NP QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474 Query: 464 KKACHHTLNQYYAAKK 479 A L+ K Sbjct: 475 DGARRRALDALATLPK 490 >gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383] Length = 518 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 232/479 (48%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 28 PAKSSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGDGAGRALGGAARWWL 86 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 87 HGSLAGLDAALARHGGRLLLLR----GDAQREIERVVHDTGAEAVYWNRRYAQPQRDADA 142 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175 L+ L+ R + + L P +L + Y+V+T + +A ++ + R Sbjct: 143 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAVPLPEPER 202 Query: 176 SLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + P D+ D E A L F + Y Sbjct: 203 IAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGY 262 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD+P TS+LSP+L G LSPRQ W+ ++ + A +L+EL WREF Sbjct: 263 ADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELGWREF 322 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 323 SYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 381 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 382 NRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 441 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 442 PVAQGQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLVEH 500 >gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578] gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923] Length = 467 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 234/480 (48%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++N +RD+ + Sbjct: 57 KQEVDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + P Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPENIWKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G + EL WR+ + +++ +P Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRD-FYNMIYVSFPNQKNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P ++IH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana] gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana] gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana] gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana] gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa] gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa] Length = 646 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 24/487 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + ++ L T++ +N Y+ + RD ++++L Sbjct: 62 LGQSLKSLGAELVLIKTHS---TVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + L P I + + + + + ++ P + G Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAG 178 Query: 187 PVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V + + + G NA L +F ++ + YVE R + Sbjct: 179 TVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESR-LKVGT 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + ++ + + + K +L + RE+ R+L Sbjct: 238 STSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCF 297 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + WN + +AW+QG TG+P++DA MR+L GW+HN++R+I Sbjct: 298 NFP-FTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 356 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + + D+ R+ NP IQG Sbjct: 357 VSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGS 416 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 +FDP+G ++R WLPEL +P ++IH P +L +NYP PI+D A Sbjct: 417 KFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERL 476 Query: 471 LNQYYAA 477 + + Sbjct: 477 MEAIFKM 483 >gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5] gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1] gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1] gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109] gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248] gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027] gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302] gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TX1467] Length = 477 Score = 289 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa] gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa] Length = 681 Score = 289 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 137/492 (27%), Positives = 219/492 (44%), Gaps = 28/492 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+AVF+ PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + DS+ L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I ++ L P + + + + + F + + LP I Sbjct: 116 KEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + R Sbjct: 176 ISGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T D + RI NP Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV A Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474 Query: 468 ---HHTLNQYYA 476 L++ + Sbjct: 475 VRLEEALSEMWQ 486 >gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1 [Canis familiaris] Length = 606 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland 1988] Length = 467 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 163/480 (33%), Positives = 236/480 (49%), Gaps = 27/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + + L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K + Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDF--PILDSGEKTANTRLANFIKHDIADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +S R W L+E G ++ EL WR+FY + +P+ +P Sbjct: 230 RYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 IEW + +AW+ G TGFP++DAAMRQL GWMHNRLRM+TASFL KDLL Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ EL N+P +YIH P + L +YP P++DHK+ + +Y +K+ Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462 >gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 660 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAA 477 +Q + Sbjct: 492 SQMWQL 497 >gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum DSM 43043] Length = 455 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 215/477 (45%), Gaps = 26/477 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++W R DLR++D+ AL AA +S V+ VF+ P +R+ + SL Sbjct: 1 MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDPRLLETGQPRSRR---LITSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL + ++ + + + R+ RD +E Sbjct: 57 ALADSLDGH---LVVRT----GNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109 Query: 127 LQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ + PG ++ + Y+V+TPF +A + P +R+ Sbjct: 110 LQSEGRRLVATGTPYAAGPGLVVTQSGAPYRVFTPFARAWRAHGSPPPA----APPLRIP 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 L + ++ Y E RD P + TS++ Sbjct: 166 WFDGDVGGLALPAVAAAGGPGGIAGEAAARTRWLDFLAEGRLGRYAEDRDRPDLDATSRM 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G + PR + GA +++ EL WREFY ++ P + Sbjct: 226 SVPLKYGEIHPRTLLADIASHPDGRTG----GAATFVTELAWREFYADVLWHRPESA-WE 280 Query: 306 PFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P ++ ++ + AW++G TG+PI+DA MRQL GWMHNRLRMITASFL Sbjct: 281 DLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGEGWMHNRLRMITASFLT 340 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL V W +G YF+ QLLDGD+ASN+ GWQW A TG D+ PYFR+ NP Q RFDP+G Sbjct: 341 KDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYFRVLNPLRQAHRFDPEG 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++R W+PEL ++ +H P N + YP +VDH L +Y +++ Sbjct: 401 DYVRRWVPELGHLAGPAVHEPWDHP--NGYAHGYPGRVVDHDAERREALARYELSRR 455 >gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 510 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 102/485 (21%), Positives = 180/485 (37%), Gaps = 20/485 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR+ D+ LY A ++ ++I P S R +FI SLL + Sbjct: 16 VNIVWFKRDLRLHDHLPLYNALQEGQ-PLLLLYILEPSLEVDPHYSDRHFNFIKESLLNL 74 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-L 127 QK L D+ + ++ +F +++ + L + Sbjct: 75 QKELKAFNTKILIIH----DEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLALEAYA 130 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + + + +V Q + + + Sbjct: 131 NNLKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSIEDI 190 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + A P G A+ + Y + A + S+ Sbjct: 191 NALEDNFKKVSLQTSASSPFQKGGTTMAMRYLTSFLHDNRYLNYAKHISKPSLARKSCSR 250 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY++ G +S RQ + + + K K + + L W+ + S+ Sbjct: 251 LSPYIAWGNVSIRQVYQ--EAKHFRESSKNKRAIDGFTSRLRWQAHFIQKFEMEDSMEFV 308 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + +AWK+G TG+P++DA MR L G+++ R+R +T SF + Sbjct: 309 SVNKGYHKLSKNVNV-KYQKAWKEGKTGYPLVDACMRCLCETGYLNFRMRAMTLSFFTHN 367 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L W+ + Q LD + + Q A G + RI+NP D G F Sbjct: 368 LWQPWQDATYHLAQQFLDFEPGIHYPQIQMQA--GETGINMLRIYNPVKNSYEHDEDGEF 425 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PEL NVP YIH P + + +YP PI+D KK H + + K Sbjct: 426 IKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIKKTAKHAGDVLWKLK 485 Query: 479 KQSLL 483 +++ Sbjct: 486 DDNMV 490 >gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704] gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855] Length = 477 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS] gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS] gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS] Length = 445 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 220/473 (46%), Gaps = 31/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+ D AL A D +V+A ++ P R+ +++ +L Sbjct: 1 MPT-LLWFRRDLRLHDLPALVDAAQ-GDGQVLACYVLDPRL--HRSAGPRRLQYLHDALR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + +V + + + + ++ + + RRD + K Sbjct: 57 DLRDQLDGRLLV-------TRGRPEQRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKA 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + S ++ P G + YKV++PF A ++ +A + Sbjct: 110 LGEVPLQPSGSPYLVSP-GRVTKGDGTPYKVFSPFFDAWRRHGWRAP-AQSGPDSATWID 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + + P P GE+ A R F +++ Y + R+ P + TS++S Sbjct: 168 PADLTGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMS 227 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VCMG 304 +L G + PR + L GA ++L EL +R+FY ++ +P Sbjct: 228 AHLKFGTIHPRTMVDDLGR---------GKGAQAYLRELAFRDFYAAVLHEWPRSVWWNW 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 E AWK+G TGFPI+DA MRQL IGWMHNR+RMI ASFLVKD Sbjct: 279 NTGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGD+A+N GWQW A G D+ P+FR+FNP+ QG +FDP GT+ Sbjct: 339 LHLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R W+PEL V +H +D +YP PIVDH L +Y Sbjct: 399 VRRWVPELKGV--ADVHK-----MGDDRPADYPAPIVDHAAERAEALRRYAEI 444 >gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus] gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus] gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus] gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus] gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus] gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus] Length = 606 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 197/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + L+ + ++ + + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 +TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 484 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 216/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA I ++I P + + A + + SL Sbjct: 13 MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 71 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G +S + LD Q +++NR+YE RD +++ Sbjct: 72 ALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRD 127 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ R I +S + ++L P + YKV+TPF + L P L Sbjct: 128 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLPPLP 187 Query: 186 GPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + Q + GE A +L F + Y E RD P G Sbjct: 188 ASLKTDALDTLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 247 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ G ++ +L WR+F HL+ +P Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLETHRTARNGAEIDG---YVRQLGWRDFAYHLLHHFPDT 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI ASFL Sbjct: 305 TNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFL 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 365 CKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 424 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNY-PLPIVDHKKACHHTLNQYYAAK 478 +I W+PEL + + AP ++ Y PI+ + L Y ++ Sbjct: 425 AAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYRRAPIIGLAEGRDAALAAYAKSR 483 >gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris] Length = 641 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 135/497 (27%), Positives = 229/497 (46%), Gaps = 26/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M++ + +VW R DLRI DN AL AA N V VFI +P++ Q + Sbjct: 1 MESNSK---TIVWFRRDLRIEDNPALAAAARN--GSVFPVFIWSPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + + ++ L TK+ YN Y+ + RD Sbjct: 56 LKQSLIHLEQSLKSLGAELVLIKAQS---TLSALLDCIEAVGATKVVYNHLYDPVSLVRD 112 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L I + L P + + +++ + + + ++ + P Sbjct: 113 HNIKQKLGELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPW 172 Query: 180 PAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 I G V + + + G NA L +F + ++ Y + Sbjct: 173 KLIPAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKD 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 R TS LSPYL G +S R+ +N ++ + + A +L + RE Sbjct: 233 RLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + + WN D +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 YSRYICFNFP-FTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN++R+I ASF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ Sbjct: 352 HNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG +DP+G ++RHWLPEL +P ++IH P +L +NYP PI+D Sbjct: 412 NPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDV 471 Query: 464 KKACHHTLNQYYAAKKQ 480 A + + +++ Sbjct: 472 DVARDRLMQAIFIMREK 488 >gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum] gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 481 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 148/485 (30%), Positives = 220/485 (45%), Gaps = 22/485 (4%) Query: 9 VHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + L W R DLR TDN+ L AA + V AVF E + + F Sbjct: 1 MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--HAAPPRVAF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +++ G D L + T++ +N Y RD Sbjct: 59 MLDALAALRERYRDLGSDLIVRH----GDPAAVLPAVANDLDATRVVWNHDYSGLATDRD 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKAL---IQNLVQADLRS 176 + L + + + PG I +A Y VYT F + +N + Sbjct: 115 AGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEP 174 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + A +P + + + +Y Y ++RD Sbjct: 175 ADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDY 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLM 295 P + TS+LSP+L G + R + + D + +++ +L WREFY ++ Sbjct: 235 PHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVL 294 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 F + + F + IEW D LQAWK G TG+PI+DA MRQL +MHNR+RM Sbjct: 295 YFN-QNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRM 353 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I A+FL KDLLVDWR G ++F +L D D A++NGGWQWAASTG D+ PYFR+FNP QG Sbjct: 354 IVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQG 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +R+DP +I ++PEL +VP IH+ H S ++ + YP PIVDH + + Sbjct: 414 ERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIAM 473 Query: 474 YYAAK 478 + A+ Sbjct: 474 FERAR 478 >gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1] Length = 465 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 135/477 (28%), Positives = 216/477 (45%), Gaps = 29/477 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R+DLR+ DN AL A + VI +++ P + +++ +L ++ Sbjct: 8 IMWFRDDLRLADNPALSDAAAS--GPVICLYVHDPALA----PGSAARWWLHGALTALED 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G + + + Q + +NR+Y + D ++ L+ Sbjct: 62 DLRARGGRLCIMAGPAW----QCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALKDM 117 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +S ++L P + ++VYTP+ +A+ +P P Sbjct: 118 GVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALPPA 177 Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + Q + + GEQ A L F ++ Y RD+PA Sbjct: 178 VEDGLVSLSALGLQPTRPDWAQGLRDTWQPGEQAAHARLATFMATRLPGYARLRDLPARP 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L G +SPRQ W+ ++ + + + + H F Sbjct: 238 ATSGLSPCLRFGHISPRQIWHAVEAQGDVDADGMCFLSEVGWRD------FAHATLFDCP 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +++ W D L+AW+QG TG+PI+DA MR+L GWMHNR+RMI ASF Sbjct: 292 DMATRSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIVASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFNP +QG++FDP Sbjct: 352 LTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQGEKFDP 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +G ++R W+PE+ ++ + +H P + + YP P+VD L + Sbjct: 412 EGDYVRRWVPEIAHLAGRAVHTPWKFPH---VHRGYPAPVVDLADGRARALAAWKTL 465 >gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin] Length = 620 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342] Length = 477 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 238/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D+A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322] gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200] gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8] gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411] gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134] gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000] gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017] Length = 477 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEVI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter sp. ATCC 27244] Length = 476 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 264/475 (55%), Gaps = 12/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A +A+ I +PEQ + H + + F L Q+Q Sbjct: 6 QLIWFRQDLRIHDHAALWHATQT--GPTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L I + D + + +++ N + +NE++RD ++K L Sbjct: 64 IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ + Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQPINI 183 Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P F + +P+GE AL +L +F +++ Y RD PA G Sbjct: 184 DPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQAG 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLS YL+IG LS RQC L + + G +WL+EL+WREFY+H++ YP V Sbjct: 244 TSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIESEGQQTWLDELLWREFYQHILFDYPRV 303 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A FL Sbjct: 304 SKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAMFL 363 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++FDP Sbjct: 364 SKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFDPN 423 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G ++R W+PEL ++ + IH P+++ + L NYP+PIVD K + + + Sbjct: 424 GDYLRQWIPELAHLDAKSIHEPYAYKMNSSL--NYPIPIVDLKSSRARAIAAFKE 476 >gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii DSM 6242] gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM 6242] Length = 467 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 216/473 (45%), Gaps = 20/473 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFIYASLLQ 67 L R D+R+ DN AL AA SD VI FI P G + + F+ SL Sbjct: 8 SLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFLLESLYD 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + + + +F N Y ++RD + Sbjct: 67 LKGQLEKVNGRLYLFSGLPEG----VIGQLLENLEIDAVFVNHDYTPFSIKRDMQIASIC 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + F D +L PGSI YKV+T F + + V Sbjct: 123 TDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFREASKRDVAVPSMFSGGSFFTGDC 182 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V + F + + A + + Y +RD+P+++GT+ LS Sbjct: 183 GVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSLSQFVNYDTERDLPSVKGTTGLS 242 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + +G +S R+ + + +E + +NEL WR+F+ + +P V Sbjct: 243 AHNKLGTISIREFYYSVIDELGRG--------HTLINELYWRDFFTQISFEFPDV-FKHA 293 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + + W+ D AW G TGFPI+DA MR+LNT G+MHNR+RMI ASFLVKDL Sbjct: 294 FKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVASFLVKDLH 353 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW+ GE YF S+L+D D NNG WQWAASTG DS PYFRIFNP +Q K+FD +I+ Sbjct: 354 IDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKFDKDCKYIK 413 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL ++ Q IH + YP PIVDH K L + AA + Sbjct: 414 KWIPELEDIEPQRIH---KLEKGDMDIPGYPAPIVDHSKEREVALFMFKAASQ 463 >gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis] Length = 621 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 + TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQMYQQ 490 >gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843] gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843] Length = 474 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 160/474 (33%), Positives = 227/474 (47%), Gaps = 14/474 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L A S K+I VF P I+ + ++ L +++K Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSP-KIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + QKG + + + L + +F+N E +RD+ + LQ + Sbjct: 65 NYHQKGSQLLIIR----GNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLTG 186 I LL + + L +A ++ + Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGEK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 N+P + F +P+ GE+ A L +FC+ + Y E R+ PA GTS+L Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRL 240 Query: 246 SPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S L G + R W L+ + K +W EL WREFY+H + F+P + +G Sbjct: 241 SAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL KD Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+G + Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR WLPEL +V T+Y+ YP PIVDH + Y K Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471 >gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC 49188] Length = 484 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 168/475 (35%), Positives = 241/475 (50%), Gaps = 21/475 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSHFIYASLLQV 68 LVWLRNDLRI DN AL AA + AV++ + R G + R ++ SL + Sbjct: 21 ALVWLRNDLRINDNPALDAAAETG-GHITAVYVHETVAEIRAPGCAVR--WWLDQSLEAI 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L+ +GI D + L + VT+LF+NR+Y E D L+ +L+ Sbjct: 78 RKQLADRGIELLIET----GDPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLK 133 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + LL P + + Y+V+TPF KAL + + L Sbjct: 134 ESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHHHIPRPLSRRQWDIKPTQET 193 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 N+P + + D ++ IGE A L +F + + Y E RD+P I GTS+LSP Sbjct: 194 CYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSP 249 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S RQ W + G +L+ELIWR+F H + + Sbjct: 250 HLRFGEISARQAWYATLAFMDEHHSARAGG-EKFLSELIWRDFNYHQLYHRRDISRHDM- 307 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I W D +AW++G TGFPIIDA MRQL GWMHNR+RM+ ASFL K+LL+ Sbjct: 308 RDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLI 367 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GEE+F L+DGD+ASN G WQW A G D+ PYFR+FNP +QG++FD +G ++RH Sbjct: 368 DWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEGQYVRH 427 Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 W+PEL+ + +++H P L YP PI+D + + + + Sbjct: 428 WVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKRLNS 482 >gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180] Length = 477 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + M V ++W R DLRI D KAL A S + + VF EQ S QS FI Sbjct: 4 RKGSVM-VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120 S+L +K L + I + D + + Q T +++N RD Sbjct: 61 T-SVLAFRKLLKCESIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + I L I+N + Q YKV+TP+ + + ++ Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + + + + A L +F ++++ Y RD PA Sbjct: 176 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L IG + R ++ +++ L G ++L EL WR+FY + YP Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI AS Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFD Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + + Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466 Query: 474 YYAAKKQSLL 483 Y AK+++ + Sbjct: 467 YEWAKEKAKI 476 >gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM 10542] Length = 450 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 141/478 (29%), Positives = 216/478 (45%), Gaps = 36/478 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + W R DLR+ DN AL +A ++V+ +F+ W + + ++ A Sbjct: 1 MTT-IHWFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWG--PSGSPRRDYLLA 57 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +S G + E L + + + +E RD+ + Sbjct: 58 SLRALDES---MGGRLVVRR----GAPTEVLPAVAREVGARTVHVAESFEPFGRARDEEV 110 Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E L + + + + PG +L Y+V+TPFR A + + + Sbjct: 111 ETALAEDDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDHGWCGPAQ------- 163 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 D P +P+ P GE+ A E V Y + R+ P + T Sbjct: 164 --DPGEVDWAELPSEDLPEADGEPLRPAGEEAA-LERWHEFLEDVAGYDDDRNRPDLDLT 220 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS L G + PR LK + GA S+ +EL WREF+ ++ P Sbjct: 221 SRLSVPLKWGEIHPRTLLADLKNLRDE-------GAASFRSELAWREFHADVLFHSPEAA 273 Query: 303 M--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +P ++ +AW +G TG+P++DA MRQL GWMH R+RM+ SF Sbjct: 274 TLSIREVMPDDAWTPRSQADRWFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSF 333 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL + W+ G +FM LLD D + N WQW A TG D+ PYFRIFNP QG +FDP Sbjct: 334 LVKDLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDP 393 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G ++R W+PEL +P + +H P + +YP +VDH + +L+ Y K Sbjct: 394 DGEYVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAYARFK 448 >gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8] gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marinobacter aquaeolei VT8] Length = 505 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 108/481 (22%), Positives = 187/481 (38%), Gaps = 24/481 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +VW + DLR+ D+ LYAA S V+ +++ PE W+Q S RQ F+ SL Sbjct: 1 MAV-VVWFKRDLRVEDHGPLYAAVQ-SGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++K L + G + I LD Q +T++F +++ + + Sbjct: 59 SLRKQLKRLGSDLLIAH----GEVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIA 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S + + V ++++ P Sbjct: 115 ---------WCQSQQIEFREWQGFGVVRRLVNRDDWDQHWNRIIKSTRLPAPEGIRSPDT 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244 P ++P G + A+ +L F + + Y P S+ Sbjct: 166 SGWPQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSSPLTAPRACSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP+L+ G +S R + + KE + L + K S+ + L W + + P + Sbjct: 226 LSPHLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELE 285 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +S L W++G TG+P++DA MR L GW++ R+R + + Sbjct: 286 FRAMHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGWINFRMRAMLMAVAS 345 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L + WR + D + + Q +G + RI+NP +Q ++ DP+G Sbjct: 346 YQLWLHWRDPALHLARLFTDFEPGIHYP--QAQMQSGLTGINALRIYNPVLQSQKLDPEG 403 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR W+PEL VP + IH P Y P+ DH++A +K Sbjct: 404 EFIRRWIPELAGVPAEMIHTPWLMTPAQKQRFGGNTYISPVCDHEQAARVARKAVGEFRK 463 Query: 480 Q 480 + Sbjct: 464 R 464 >gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 481 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 162/481 (33%), Positives = 232/481 (48%), Gaps = 18/481 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA KV+ VF P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNTGL-AAAKRRSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G D ++ + + +F+N E RD+ + L+ + Sbjct: 65 RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120 Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182 I + P I Y VYTPF K I + +L Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +P D F + + GE A L +F + + Y EQR+ PA+ G Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPAVDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W ++ + +W EL WREFY+H M +P Sbjct: 241 TSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G F + W + QAW +G TG+PI+DAAMRQ+N GWMHNR RMI ASF Sbjct: 301 LADG-AFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLL++ ++GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP Sbjct: 360 LTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQTQKFDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +G +IR W+ EL +V T+Y+ ++ YP PIVDHK + +Y K Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNT 477 Query: 481 S 481 S Sbjct: 478 S 478 >gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp. novicida GA99-3549] gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549] Length = 464 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 153/488 (31%), Positives = 227/488 (46%), Gaps = 34/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + W R DLR+ DN ALY A + I +FI Q GI + Sbjct: 1 MSKK----IAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----GIGGASKLW 50 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + SL K + +E + + +T ++NR Y+ + RD Sbjct: 51 LHYSLNSLNSSLDNKL-------NFYSGNPLEIIRKIIKENNITDFYWNRCYDKYSIDRD 103 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176 +++ LQ I + + L + P YKVYTPF + + + Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 S + +Q I + IGE + IL +F KV Y RD Sbjct: 164 FSYLRKLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS+LSPYL G +SP Q +N + L + ++ EL+WR+F + + Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +YP K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q + Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +F+ +IR ++PEL +P + I P + L NYP PIVD KK+ Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456 Query: 471 LNQYYAAK 478 L + K Sbjct: 457 LQLHNQIK 464 >gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis TUSoD Ef11] gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141] gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645] Length = 477 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|746118|prf||2017201A DNA photolyase Length = 486 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 165/477 (34%), Positives = 234/477 (49%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 VW R D R+ D+ AL A K +A F P + + + + +++Q Sbjct: 16 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 72 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ L G + + L + ++ N + RD+ E L Sbjct: 73 KQMLKTNGGDLYIITGTIEGGQLSKL--LQAFPEIDAVYANDDRVGDGRLRDEAAEHFLA 130 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + P +L YKV+TP+ KA + + + Sbjct: 131 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 190 Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + + + IGE++A+ L+ F K+++ Y RD P+I GTS+ Sbjct: 191 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 250 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ G +S R + + D A ++L EL WR+FYR + + P C Sbjct: 251 LSPYIKTGAVSSRSIYYHILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKD 304 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + ++ W+ D L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KD Sbjct: 305 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 364 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR+GE YF L+D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+ Sbjct: 365 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 424 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 IR ++PELN+VP YIH P + K L +YPLPIVDH K L+ + Sbjct: 425 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 481 >gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization [Arabidopsis thaliana] gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light photoreceptor gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana] gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana] gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana] gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana] gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana] gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana] gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana] gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana] gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana] gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana] gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana] gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana] gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana] gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana] gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana] gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana] gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana] gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana] gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana] gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana] Length = 612 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas atlantica T6c] Length = 481 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 185/478 (38%), Positives = 257/478 (53%), Gaps = 13/478 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS LVWLR DLR N A+ A N D V AV+ T EQW + +S+ + IY L+ Sbjct: 1 MS-ALVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLV 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + K L+++ I Q + S + L C + VT ++ N +YE +E +RD ++ Sbjct: 59 NLHKELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNI 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I + L + + + YKV+TP+ K + +Q T Sbjct: 119 LKKIDIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQLPGVPDNHKASDT 178 Query: 186 GPVTPSNIP--------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 G +N + +P L F E Y + RDIP Sbjct: 179 GLSQSANDSIQIDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNRDIP 238 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 ++ GTS++SPYLSIG LSP QC + +E+ D + + GA++W+ E+ WR+FYR++M Sbjct: 239 SVDGTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYVMYH 298 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V G PF + +W + H AWK G TG+PI+DAAM L GWMHNRLRMI Sbjct: 299 FPHVSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLRMIV 358 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASF K LL+ W+ E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +R Sbjct: 359 ASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSER 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 FDP+G FI+ WLPEL ++ + IH P D + Y LPIV+HK + T Q+ Sbjct: 419 FDPKGEFIKTWLPELEHLSPKQIHEPSKHCDVQRIG--YALPIVEHKASVMRTKEQFK 474 >gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649] gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649] Length = 455 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 230/473 (48%), Gaps = 20/473 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++WLR DLR D+ AL AA + +++ ++ P W G A + ++ A+L Sbjct: 2 TSVLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWA--GAGAVRRAWLAAALEAT 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ G+ + D E + + + T + R+ RRD+ + L Sbjct: 60 REEFDD-GLTLL------WGDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLA 112 Query: 129 HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + ++ + + YKV+TPF KA + +R Sbjct: 113 AQGIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGHGWPDPAPRPSELPLRHVRN 172 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + GE+ A+ R+FC+ + Y RD+PA GTS+LSP Sbjct: 173 DAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDLPATDGTSRLSP 232 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL +GV+ PR L + GA +++NEL WREFY ++ PS K Sbjct: 233 YLKLGVVHPRTLLADLAGRRGE-------GAQTYINELGWREFYADVLWHNPSSA-WKDL 284 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + +++ + ++AW+ G TG+PI+DA MRQL GWMHNR+RMITASFL KDL V Sbjct: 285 RDPLAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMITASFLTKDLHV 344 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W +G +F+ L+DGD+ASNN GWQW A TG D+ PYFR+FNP QG++FD G ++R Sbjct: 345 WWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGEKFDVDGDYVRE 404 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL ++ + H P D YP IVDH + L + K Sbjct: 405 WVPELAHLAGKAAHQPWEHPDGYAHG--YPQRIVDHAEERREALRRLGELKDS 455 >gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750] Length = 477 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + M V ++W R DLRI D KAL S + + VF EQ S QS FI Sbjct: 4 RKGSVM-VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120 S+L +K L +GI + D + + Q T +++N RD Sbjct: 61 T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + I L I+N + Q YKV+TP+ + + ++ Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + + + + A L +F ++++ Y RD PA Sbjct: 176 QGRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L IG + R ++ +++ L G ++L EL WR+FY + YP Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI AS Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFD Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + + Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466 Query: 474 YYAAKKQSLL 483 Y AK+++ + Sbjct: 467 YEWAKEKAKI 476 >gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus] gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus] Length = 621 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs gb|W43661 and gb|Z25638 come from this gene [Arabidopsis thaliana] gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T +VW R DLRI DN AL AA + V VFI PE+ Q + Sbjct: 1 MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + ++I + TK+ +N Y+ + RD Sbjct: 54 MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L R I + L P I + + + + K + +++ + P Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 + +T + + + + G NA +L +F ++++ Y Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 + TS LSPYL G +S R + + + D + + A +L + Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE+ R++ +P + + W+ D +AW+QG TG+P++DA MR+L Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 R+ NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PI Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469 Query: 461 VDHKKACH 468 VD A Sbjct: 470 VDIDTARE 477 >gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270] Length = 477 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 173/490 (35%), Positives = 245/490 (50%), Gaps = 25/490 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + M V ++W R DLRI D KAL S + + VF EQ S QS FI Sbjct: 4 RKGSVM-VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120 S+L +K L +GI + D + + Q T +++N RD Sbjct: 61 T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + I L I+N + Q YKV+TP+ + + ++ Sbjct: 116 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + + + + A L +F ++++ Y RD PA Sbjct: 176 QDRWLNLETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L IG + R ++ +++ L G ++L EL WR+FY + YP Sbjct: 234 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI AS Sbjct: 288 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL KDLL DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFD Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 P+G FI+ +LP+L +VP +Y+H P + +YP PIVDH K + + Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAK 466 Query: 474 YYAAKKQSLL 483 Y AK+++ + Sbjct: 467 YEWAKEKAKI 476 >gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana] gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana] gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana] gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana] gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana] gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana] gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana] gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana] gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 135/485 (27%), Positives = 219/485 (45%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I S + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum] gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum] Length = 629 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 139/487 (28%), Positives = 219/487 (44%), Gaps = 26/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + D ++ L + TK+ +N Y+ + RD ++++L Sbjct: 65 SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I KS++ +L P + + + + PF + + ++ P I G V Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181 Query: 190 PSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +I + + G NA L +F +++ Y + R TS Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + K +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + WN D + W+QG TG+P++DA MR+L GWMHNR+R+I +S Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ G +YF LLD DL + GWQ+ + D R+ +P I G +FD Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGAKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470 P+G ++R WLPEL +PT++IH P + +L NYP PI+D A Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREKLTQA 480 Query: 471 LNQYYAA 477 + + + Sbjct: 481 IFKMWEI 487 >gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana] gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 219/488 (44%), Gaps = 31/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T +VW R DLRI DN AL AA + V VFI PE+ Q + Sbjct: 1 MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + ++I + TK+ +N Y+ + RD Sbjct: 54 MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L R I S + L P I + + + + K + +++ + P Sbjct: 111 HTVKEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 + +T + + + + G NA +L +F ++++ Y Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 + TS LSPYL G +S R + + + D + + A +L + Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE+ R++ +P + + W+ D +AW+QG TG+P++DA MR+L Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D Sbjct: 350 GWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 R+ NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PI Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469 Query: 461 VDHKKACH 468 VD A Sbjct: 470 VDIDTARE 477 >gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145] Length = 448 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 158/478 (33%), Positives = 229/478 (47%), Gaps = 47/478 (9%) Query: 3 ATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60 T M + LVWLR DLR+ D ALY A N + V+ +FI R+ F Sbjct: 12 NTITMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKFDRRVDF 70 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I+ L ++K L + D I+ + + ++ NR YE + RD Sbjct: 71 IHQVLSDMKKELDAINSSLLV----EYGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARD 126 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++K ++ + I K+F D + I+ Y ++TP+ + L + Sbjct: 127 ESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLND-----FYL 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + F +P +L + Y + RD PA+ Sbjct: 182 KSYPCKKYYHHFYQGDDFKFPDLESLGFSKTDIVYNKFVLSREIVRH---YDKTRDFPAL 238 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GTS+ S +L G +S R+ + ++LNELIWR+FY ++ YP Sbjct: 239 KGTSRASMHLRFGTISIRKLARYALDYN-----------ETYLNELIWRDFYMMILYHYP 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + F +KI W + +AW +G TG+PI+DA MR+LNT G+MHNR+RMI AS Sbjct: 288 KIVRH-SFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTTGFMHNRVRMIVAS 346 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L D DL++NNGGWQWAAS+G D+VPYFRIFNP Q K+FD Sbjct: 347 FLTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYFRIFNPEEQTKKFD 406 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 P +IR W+PEL+++ +YP PIV+HK A LN Y A Sbjct: 407 PNRAYIRKWIPELDSL-------------------DYPKPIVEHKFARERALNVYKKA 445 >gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula] Length = 620 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP Y +++ ++P GE AL L + + K + Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1] Length = 470 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 257/473 (54%), Gaps = 11/473 (2%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIA-TPEQWRQHGISARQSHFIYASL 65 HLVWLRNDLR DN ALY A ++ + IAV + TP+QW QH S ++ + Sbjct: 4 THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K+L+ GI + FD + + +CL + L++NR I+E +RD+ + + Sbjct: 64 KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +LQ I + ++ +L+ +KV+TPF + L Q D+ LP P + Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + + +P A L +FC K +Y E RD P TS L Sbjct: 184 ALPEPCLNLTWEKPFRDDL---WPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL++G L PRQC + + + WL EL WR+FYR LM+ +P +C + Sbjct: 241 SPYLALGALGPRQCLEAIFYTCNQEERRWQDSI--WLKELAWRDFYRQLMSHFPFLCKSR 298 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF P T + W ++ QAW +G TGFPI+DAAMRQLN GWMHNRLRM+ ASF K + Sbjct: 299 PFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKLM 358 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D G FI Sbjct: 359 FADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDFI 418 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL + + IH P K +YP PI+D+K A + + K Sbjct: 419 RRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPARLAAIAAFDELK 468 >gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17] gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17] Length = 455 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 204/473 (43%), Gaps = 23/473 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S H+VW R DLR+ D AL AA V+ V+I E + Q +++ SL Sbjct: 3 SPHIVWFRQDLRLHDQPALLAAAEA--GPVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K L G + ++E L + + + R YE + + L RL Sbjct: 61 LAKDLKALGSRLILRR----GRAVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELGDRL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ GS + ++ ++A + Sbjct: 117 CLYDGNHLARPELVT-TGSGKPFRIYSAFWKGLQGHMPPEHPLEAPDALTAPDRWPASDK 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + ++ D + GE A K Y R++P+ +G+S+LSP Sbjct: 176 LADWDLLPTKPDWSTGFDADWTPGEATARE-RMADFVAKAAAYDTARNMPSEEGSSRLSP 234 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +SPR W+ L + ++ EL WR+F ++ P Sbjct: 235 HLHFGEVSPRAVWHALDRKAE---------TETFRKELAWRDFTDGVVMAIPDYADRNGR 285 Query: 308 IPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + L+AW+ G+TG+PI+DA MRQL T GWMHNR+RMITASFL+K L Sbjct: 286 EAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMITASFLIKHL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +F L+D D +N+ WQW A TG D+ + RI P Q ++FD G +I Sbjct: 346 LIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSEKFDA-GDYI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL ++ IH P + +YP I+ H++ L + + Sbjct: 405 REWVPELKDLSDAAIHDPDEAGCR---PKDYPAKIIGHREGRERALAAGKSVR 454 >gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315] gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315] Length = 494 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 145/479 (30%), Positives = 229/479 (47%), Gaps = 23/479 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ VF+ + ++ Sbjct: 4 PAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + +L++ G + D+ ++ +++NR+Y + D Sbjct: 63 HGSLAGLDAALARHGGRLLLLR----GDAQREIERLVRDTGAAAVYWNRRYAQPQRDADA 118 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQAD------- 173 L+ L+ R + + L P +L + Y+V+T + +A ++ A Sbjct: 119 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQ 178 Query: 174 ---LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 R + P D+ D E A L F + Y Sbjct: 179 IVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGY 238 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ + A +L+EL WREF Sbjct: 239 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGWREF 298 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA +R+L T GWMH Sbjct: 299 SYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFL+K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 358 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 417 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 P QG++FDP G ++R W+PEL + IHAP L ++YP P+V+H Sbjct: 418 PVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLVEH 476 >gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana] Length = 612 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 135/485 (27%), Positives = 219/485 (45%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I S + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074] Length = 457 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 216/474 (45%), Gaps = 22/474 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D AL AA +DA V+ +F+ + ++ F+ L Sbjct: 1 MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G D +E + + ++ RR++ L + Sbjct: 60 DLDHSLRERGGRLVIRS----GDLVEEVCRVVTEADADEVHLAEGVSAFARRREERLREA 115 Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + V PPG++ + + V+TP+ + + ++ L P Sbjct: 116 LESEGRRLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHPL---GAPRTVR 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + GE L + + Y +Q D A TS+ Sbjct: 173 VPDGIGSEKVPARGDVRGVSAGLAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAGDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LS + +R + + GA +++ +L WR+F+ ++A P Sbjct: 233 LSPHLHFGTLSAAELVHRARRKEGA-------GATAFVRQLCWRDFHHQVLAARPDASHA 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +AW++G TG+PI+DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 DYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAASFLSKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR G ++F+S L+DGD+A+N WQW A TG D+ P+ R+ NP Q R+DP G + Sbjct: 346 LYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRYDPDGAY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL V + +H P + + ++YP P+V + L+++ A+ Sbjct: 405 VRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVVGLSEG----LDRFRRAR 454 >gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor] Length = 654 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 129/490 (26%), Positives = 214/490 (43%), Gaps = 28/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ +FI P + Q+ ++ SL + K Sbjct: 8 VVWFRRDLRIHDNPALAAAAK--EGSVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLGK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + D ++ L T++ YNR Y+ + D ++ L Sbjct: 66 SLELLGCPLVLIRAE--DSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNELSAH 123 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L P + + Q + + + + + ++ P + G Sbjct: 124 GISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPGLAN 183 Query: 190 PSNIPRFF---------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + G +NA ++L +F + Y + Sbjct: 184 VRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVGGT 243 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + + + + + +L + +RE+ R+L Sbjct: 244 TTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYLCF 303 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + F+ + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 304 NFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 362 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG+ Sbjct: 363 VSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 422 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +PT++IH P S +L NYP PIV+ A Sbjct: 423 KYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARECL 482 Query: 469 -HTLNQYYAA 477 ++ + Sbjct: 483 DDAISTMWQL 492 >gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus] gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus] Length = 680 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 139/488 (28%), Positives = 224/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 11 CSIVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 69 DSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALT 125 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+ +L P + + + + ++ F + + + LP I Sbjct: 126 AEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 185 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 F+ + + + G NA L F + Y + R T Sbjct: 186 SKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 245 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S R+ ++ L+ + + + +L + RE+ R++ + Sbjct: 246 SFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 305 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 306 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 364 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 365 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 424 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP PIV +A Sbjct: 425 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHE 484 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 485 ALSQMWQL 492 >gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96] gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96] gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712] gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613] gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 512] gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO 516] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 471 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 236/476 (49%), Gaps = 25/476 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC + D +I +F PEQ+ S F ++S+ Sbjct: 2 TSVMWFRRDLRLNDNKALYQACRDKDD-LILLFQVNPEQFING--SPSHQAF-FSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + + L+ + K+++NR +RD+ + Sbjct: 58 KQKVDE-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + A YKV+TP+ K + + + L P Sbjct: 113 AKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKERPLPISINPEKVNNT 172 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F + + +GE A L F KE + Y E RD P + TS L Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S R W ++E +G ++ EL WR+ + +++ + Sbjct: 233 SRFLRTGEVSIRTVWQAVQEAE------HTNGRATFEKELCWRD-FYNMIYVSFPNQKNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + Q W+QG TGFP++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 R ++ EL +P ++IH P ++ + +YP PIVDHK+ + +Y Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461 >gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371] Length = 565 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 165/486 (33%), Positives = 232/486 (47%), Gaps = 43/486 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + + +I ++I +PE H S + I +L Sbjct: 100 VHWFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLAT 159 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ LS+K I + C + LF N +YE++E+RR+ L + Sbjct: 160 LKSGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLC 219 Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------- 173 + I +D ++ PG + + Y VYTP+ ++ + L Q Sbjct: 220 ATQGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + N + + + M+P GEQ A LR+F EK Y Sbjct: 280 GDARKHFKDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHS 339 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD + Q TS LSPY S G LS R L L+ + Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTA---------------PFIEAMKLCGLVITD--- 381 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 S M K F P +EW DS AW +G TGFPI+DAAMRQL WMHNR Sbjct: 382 ------DSSSMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI +SFL KDLL+DWR GE++FM L+DGD ASN+GGW + +STG D PYFRIFNP Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471 Q +RFDP G +IRHW+PEL +V IH P+ + N YP PIV+H ++ L Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555 Query: 472 NQYYAA 477 +Y A Sbjct: 556 EKYKKA 561 >gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG] gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana] gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana] gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana] Length = 612 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 218/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DIARE 479 >gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus] Length = 618 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 218/484 (45%), Gaps = 28/484 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLTQSLKALGSEPTLIKTH---NTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + V++ + P I Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLI 175 Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 LT T + + G NA IL +F ++++ Y + Sbjct: 176 PLTAAGTVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNS 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 TS LSPYL G +S R+ + + + D + A +L + R++ Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRDY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWMH Sbjct: 296 SRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ N Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDID 474 Query: 465 KACH 468 A Sbjct: 475 TARE 478 >gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC 17616] gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC 17616] Length = 476 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 149/461 (32%), Positives = 224/461 (48%), Gaps = 10/461 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L ++G Q D + + +++ R+YE + RD L+ Sbjct: 60 SLDRALREQGGRLLAMQS----DPTIAVPALARAVDAQGVYWTRRYEPAAIARDAALKST 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + I S+ ++ P ++ A Q Y+V+TPF + L +L P +T Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMT 175 Query: 186 GPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + GE A L +F E + Y + RD PA GT Sbjct: 176 TDDSTAVEALGLLPRIRWDAGLADAWRPGEGGAWERLEQFVDEALAEYGDARDAPARLGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS +L G ++P Q L+E + +L EL WREF HL+ +P Sbjct: 236 SRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLYHFPHTT 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + D L W+QG TG P++DA MRQL GWMHNR+RM+ ASFL Sbjct: 296 DANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q +FDP Sbjct: 356 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +++ WLPEL+ +P +H P + YP P+VD Sbjct: 416 AYLKRWLPELSRLPADVLHRPWKHSA-ALAACGYPTPMVDL 455 >gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC 10712] Length = 457 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 204/472 (43%), Gaps = 18/472 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ P R + + F+ L Sbjct: 1 MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L ++G + + + Sbjct: 60 ALDSALRERGGRLVVRSGDPVAEVCAVVRE--ADADEVHMAAGCSGFARRREDRLRRALE 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R + LP G++ Y V+TP+ + + ++ L P + T Sbjct: 118 ADGRRLYVHDAVVTALPTGAVTPGGSDHYAVFTPYFRRWSRERLREPLA---APRVVRTP 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + GEQ L + E V Y E+ D A TS+LS Sbjct: 175 RGIRSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDDLAGDATSRLS 234 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G +S + +R + GA +++ +L WR+F+ ++A P Sbjct: 235 PYLHFGAVSAAEAVHRARSRGGA-------GAEAFVRQLCWRDFHHQVLAARPDAASDDY 287 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + L+AW++G TG+P++DAAMRQL GWMHNR R++TASFL K L Sbjct: 288 RTRHDRWRRGTEAEADLRAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLTASFLTKTLY 347 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G +F+ L+DGDLA+N WQW A TG DS P R+ NP Q KR+DP+G ++R Sbjct: 348 IDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRP-NRVLNPVTQAKRYDPEGAYVR 406 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL + +H P + +YP P+V+ L ++ A+ Sbjct: 407 RWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVELADG----LARFRRAR 454 >gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes DSM 40736] Length = 458 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 219/475 (46%), Gaps = 24/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V +V +DLR+ D+ L AA ++ V+ +F+ + + F+ L Sbjct: 1 MHVSVVLFTSDLRLRDHPPLRAALDSAGT-VVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G D +E + + ++ + RR+ L + Sbjct: 60 DLDSSLRERGGRLVV----CSGDLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115 Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ D+V + PPG + + V+TP+ + Q A LR + R+ Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQ----ARLRDVVAAPRRV 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P I P P GE + + + + Y + RD A TS Sbjct: 172 PVPEHVKGEPLPARDDVPGISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAADSTS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L G LSP + +R + GA + + +L WR+F+R ++A P Sbjct: 232 RLSAHLHFGTLSPVELIHRARRHGG-------PGAEALVRQLAWRDFHRQVLAARPDAAH 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 ++AW+QG TG+P+IDAAMRQL GWMHNR R++TASFL K Sbjct: 285 TDYRTQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLLTASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q KR+DP GT Sbjct: 345 TLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGT 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL + +H P + +L+YP P+V + L+++ A+ Sbjct: 404 YVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVVPLSEG----LDRFRRAR 454 >gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera] Length = 691 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VI VFI PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + D + L T LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I SF+ +L P + + + ++ F + + LP I Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana] Length = 610 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 134/488 (27%), Positives = 218/488 (44%), Gaps = 31/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T +VW R DLRI DN AL AA + V VFI PE+ Q + Sbjct: 1 MDKKT-----IVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWW 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + ++I + TK+ +N Y+ + RD Sbjct: 54 MKQSLAHLSQSLKALGSDLTLIKTH---NTISAILDCIRVTGATKVVFNHLYDPVSLVRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++++L R I + L P I + + + + K + +++ + P Sbjct: 111 HTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPW 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230 + +T + + + + G NA +L +F ++++ Y Sbjct: 171 RLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDY 230 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286 + TS LSPYL G +S R + + + D + + A +L + Sbjct: 231 AKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIG 290 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 RE+ R++ +P + + W+ D +AW+QG TG+P++DA MR+L Sbjct: 291 LREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWAT 349 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNR+R+I +SF +K LL+ W+ G +YF LLD DL + GWQ+ + + D Sbjct: 350 GWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELD 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 R+ NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PI Sbjct: 410 RLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPI 469 Query: 461 VDHKKACH 468 VD A Sbjct: 470 VDIDIARE 477 >gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 151/486 (31%), Positives = 236/486 (48%), Gaps = 23/486 (4%) Query: 16 NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D R +DN L AA + + ++ +++ + HG+S Q + SL +++ L Sbjct: 121 RDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREEL 180 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +QK I + + + + Q +++ LF N +YE++E+RR L K L I Sbjct: 181 AQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADI 240 Query: 133 CKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +P + + V+TP+ +A +L + Sbjct: 241 SFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFR 300 Query: 191 SNIPRFFDYPFQA--------------IDPMFPIGEQNALHILRKFCKEKVYYYVE-QRD 235 FD + GE A L+ F R+ Sbjct: 301 QRNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHL 294 P++ G S++S + + G ++ R L + + + GA W ++ WR+FYRH+ Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL+ +G++HNR+R Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNRVR 480 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Q Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540 Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A L Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600 Query: 473 QYYAAK 478 +Y AK Sbjct: 601 RYKEAK 606 >gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596] Length = 471 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 240/476 (50%), Gaps = 25/476 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DN ALY AC ++D ++I +F PEQ+ S F ++S+ Sbjct: 2 TSVMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQFITK--SPSHQAF-FSSVAYF 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--QRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + + H F + I L+ + F + R + L Sbjct: 58 KQQVDK-----IAHLQIMFGEPINLLEKLKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + +FDD+ L ++ + YK++TP+ K + + + ++ PA Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172 Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P + +F +GE A + L F KE + Y E RD P + TS L Sbjct: 173 ILFPEDEEQFVQMAQALPMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTSHL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G LS R W +++ G ++ EL WR+ + +++ + Sbjct: 233 SRFLRTGELSIRTVWQAVQKAEP------TDGRTTFEKELCWRD-FYNMIYVSFPNQKNE 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 IEW + + Q W+QG TG+P++DAAMRQL GWMHNRLRMITASFL KDL Sbjct: 286 AIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD G FI Sbjct: 346 LIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGNFI 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 R ++ EL N+P ++IH P K L +YP PI++H++ + +Y Sbjct: 406 RKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYE 461 >gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 490 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 118/477 (24%), Positives = 187/477 (39%), Gaps = 33/477 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D++ L A V+ ++I PE W Q SARQ F SL Sbjct: 1 MTLQLVWFKRDLRLVDHQPLARALAR--GPVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++ + G D+++ L+ Q V+ L+ + + Sbjct: 59 DLQQACAALGQPLIIRS----GDAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + LP ++ + + + + A P+P I Sbjct: 115 ----WARERGIPWHELPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGIAPGD 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244 T + G AL L F +V Y P G S+ Sbjct: 171 LPTSEALALRS----DPCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFNGCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS Y++ G LS R+ R ++ G S+ + L W + + P Sbjct: 227 LSAYITWGCLSMREVLQRSRDLKGR-------GVSSFTSRLHWHCHFIQKLEDQP-PIEW 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P+ I D AW +G TG P +DA MR L GW++ R+R + SF + Sbjct: 279 EDFHPFMRGIRSL-DHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYN 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR + Q +D + + Q +G+ S+ RI+NP QG DP+GTF Sbjct: 338 LWLPWRETGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPEGTF 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 IR W PEL +VP ++H P S L P PIVD ++ + + ++ S Sbjct: 396 IRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEIRRSS 446 >gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum] gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum] Length = 635 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 141/503 (28%), Positives = 229/503 (45%), Gaps = 31/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M++ +VW R DLRI DN AL AA N V+ VFI P++ Q + Sbjct: 1 MESNYK---TIVWFRRDLRIEDNPALAAAARN--GSVLPVFIWCPKEEGQFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ +++SL G + + ++ L TK+ YN Y+ + RD Sbjct: 56 LKQSLIHLKQSLKSLGAELVLMKAQS---TLSALTECVDAVGATKVVYNHLYDPVSLVRD 112 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++++L I + LL KV+T F ++L + +P Sbjct: 113 HNIKQKLGDLGISVQSYNGDLL--NEPWEVYDDDGKVFTTFDAYWEKSLSIQNEPVSQLP 170 Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYV 231 RLT + + + + + G NA L +F + + Y Sbjct: 171 PWRLTQAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYS 230 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIW 287 + R TS LSPYL G +S R+ +N ++ + + K A +L + Sbjct: 231 KDRLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGL 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R++ +P + + WN D +AW+QG TG+P++DA MR+L G Sbjct: 291 REYSRYICFNFP-FTHERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+HN++R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R Sbjct: 350 WVHNKIRVIVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELER 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 + NP +QG +DP+G ++RHWLPEL +P ++IH P +L +NYP PI+ Sbjct: 410 LDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPII 469 Query: 462 DHKKACHHTLNQYYAAK-KQSLL 483 D A + + K++ + Sbjct: 470 DVDVARDRLMQAIIIMREKEAAV 492 >gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232] gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC 10782] Length = 469 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 172/483 (35%), Positives = 242/483 (50%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAH-VIASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L +GI + D + + Q T +++N RD+ + Sbjct: 59 RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L I+N + Q YKV+TP+ + + ++ L Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + A L +F ++++ Y RD PA GTS+LS Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L IG + R ++ +++ L G ++L EL WR+FY + YP +P Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 346 CDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP +Y+H P + +YP PIVDH K + +Y AK++ Sbjct: 406 AYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEK 465 Query: 481 SLL 483 + + Sbjct: 466 AKI 468 >gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L] Length = 474 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 230/476 (48%), Gaps = 17/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ VF P + I+ + ++ L Q+Q+ Sbjct: 6 LFWHRRDLRISDNVGLAAAFELSP-KLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G D + + + + +N E RD+ + L+ + Sbjct: 65 GYRQAGSQLLILH----QDPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKEK 120 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPVPAI 182 I LL PG I + Y VYTPF K + + + Sbjct: 121 GIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNWQGQSKAEPVATLTRVESLTEIEQD 180 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + P GE+ A IL +FC + Y EQR+ P + GT Sbjct: 181 NALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNFPGVDGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L GV+ R+ W + + + + +W EL WREFY+H M F+P + Sbjct: 241 SKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G + + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 AQGPYRQKFQDF-PWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q K+FDP Sbjct: 360 TKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 G +IR WLPEL++V T+Y+ + + YP PIVDH + Y Sbjct: 419 GEYIREWLPELSSVDTEYVVS-GKIPESGREMCGYPAPIVDHNQQQRRFKELYKEL 473 >gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding [Cupriavidus taiwanensis LMG 19424] gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Cupriavidus taiwanensis LMG 19424] Length = 519 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 239/490 (48%), Gaps = 26/490 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR TD+ AL+ A + A+V VF+ + + R+ FI SL Sbjct: 23 GLVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSL 81 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124 +++ +L+ G D + + + +F N YE R + + + Sbjct: 82 VELAGTLAAAGGGLIVLH----DRAQTAIPALARALDAEAVFANHDYEPAANARDEAVRQ 137 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIR 183 +F D + ILN + + V+TP++ A ++ D P + Sbjct: 138 ALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPYLP 197 Query: 184 LTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PV P + + + + L + ++ Y +RD PA Sbjct: 198 ALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEFTGRMGDYGRRRDYPA 257 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R E + GA WL+ELIWR+FY ++ + Sbjct: 258 LRGPSYLSVHLRFGTISIRTLARVAHEAMLRGGADSA-GAAVWLSELIWRDFYFMILHHH 316 Query: 299 PSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P V G F P + I W AW+ TG+P+IDAAM Q+ G+MHNRLRM Sbjct: 317 PRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNRLRM 376 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFLVKDL VDWR GE+YF QL D DLA+NNGGWQWAASTG D+ P+FRIFNP Q Sbjct: 377 VTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 436 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 ++FDPQG FIR +LP+L +P +Y+HAP + + L NYP P+V H A Sbjct: 437 QKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVARQQ 496 Query: 470 TLNQYYAAKK 479 TL +Y A K+ Sbjct: 497 TLRRYEAVKQ 506 >gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin] Length = 587 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 193/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera] Length = 646 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 137/489 (28%), Positives = 227/489 (46%), Gaps = 26/489 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ SL+ Sbjct: 5 SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL G + + +IE L TKL YN Y+ + RD ++++L Sbjct: 63 LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +S++ +L P I + + + + + ++ P + G Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAG 179 Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V +I + + G NA L +F ++ ++ Y ++R Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGN 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + ++ + + + +L + RE+ R+L Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 300 NFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P IQG Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469 +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ A Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478 Query: 470 --TLNQYYA 476 + + Sbjct: 479 TEAIFMMWE 487 >gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 684 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 18 IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 76 SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G NA L F + Y + R TS Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A L Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491 Query: 472 NQYYAA 477 +Q + Sbjct: 492 SQMWQL 497 >gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31] Length = 478 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 164/475 (34%), Positives = 231/475 (48%), Gaps = 15/475 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VWLRNDLR+ DN AL AA VI ++I E + ++ SL + Sbjct: 10 IVWLRNDLRLADNPALIAAAATG-RPVIPLYILD-ETPGVRPMGDASLWWLDKSLAALDA 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + + L+ + +NR Y+ + RD L+ L+ Sbjct: 68 ALRATGSRLILRRGP----ARAVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDE 123 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185 + C+SF+ +L P ++ N + Q YKV+TP+ +A L V+ ++L PA Sbjct: 124 GVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAPAHWPH 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + ++ GE AL L F V Y +RD P ++ TS+L Sbjct: 184 GDALEDWTLHPALLDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATSRL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G + PRQ W + P +L+E+ WRE + H + F+ Sbjct: 244 SPHLHFGEIGPRQVW-AAARHAAEAGDAPAGQVEKFLSEIGWRE-FNHSILFHNPDLPHT 301 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P + W K+ +AW +G TG+PI+DA MR+L G+MHNR+RMI ASFLVK L Sbjct: 302 SFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASFLVKHL 361 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE +F L+D DLASN G WQW A G D+ PYFRIFNP QG++FDP G ++ Sbjct: 362 LIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDPAGAYV 421 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL +P IH P + YP PIV H A L Y K Sbjct: 422 RRWVPELAKLPDALIHEPWKASPDPGAAAARIYPEPIVGHPAARERALEAYRGLK 476 >gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6] gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137] Length = 477 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 151/486 (31%), Positives = 235/486 (48%), Gaps = 23/486 (4%) Query: 16 NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D R +DN L AA + + ++ +++ + HG+S Q + SL +++ L Sbjct: 121 RDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREEL 180 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +QK I + + + + Q +++ LF N +YE++E+RR L K L I Sbjct: 181 AQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADI 240 Query: 133 CKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +P + + V+TP+ +A +L + Sbjct: 241 SFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFR 300 Query: 191 SNIPRFFDYPFQA--------------IDPMFPIGEQNALHILRKFCKEKVYYYVE-QRD 235 FD + GE A L+ F R+ Sbjct: 301 QRNSHLFDLKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHL 294 P++ G S++S + + G ++ R L + + + GA W ++ WR+FYRH+ Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P +CM KPFI ++++W +S + W QG TG+PI+DAAMRQL +G++HNR+R Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNRVR 480 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K L++DWR GE YF+ L DGD SNNGGW +++S G D PYFRIFNP Q Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540 Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472 ++FD +G +IR WLPEL + + IH P+ + N YP PIVDHK A L Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600 Query: 473 QYYAAK 478 +Y AK Sbjct: 601 RYKEAK 606 >gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ ++ Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L I + L P I + + +++ + K + +++ + P Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVMLPPPWRLR 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + G NA IL +F +++ YY + Sbjct: 176 PITAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R+ + + + D + + +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP IQG FDP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114] Length = 470 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 233/479 (48%), Gaps = 24/479 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + WLRND R+ DN+AL + + F+ ++ + Q ++Y +L K Sbjct: 6 IYWLRNDFRLNDNEALSYLLSSENND----FVFFSYDKEKYKFRSAQKWWLYKTLKIFDK 61 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 LS+ G+ F + +L+ +++T++ +N+ + E+ + + K L+ Sbjct: 62 KLSEIGVKFIVENDLEY----SFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLEKN 117 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLTG 186 I S LL + + + + + Sbjct: 118 NIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKKNLIKSKKSLKNN 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++ + + GE AL ++ F EK+ +Y + RD P+I+GTS+LS Sbjct: 178 NQSKIETILPKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGTSKLS 237 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G +SP++ ++ + G +LNE+ WREF HL+ +P + Sbjct: 238 PHLAFGEISPKKIYDECTKIKNKK-----IGVTKFLNEIGWREFAYHLINHFPIMLKKN- 291 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +K W+++ L WK+G TG+PI+DAAM+QL GWMHNRLRM+ SFLVK L Sbjct: 292 LRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFLVKHLR 351 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 ++W GE+YF LLD D A+N GWQW A G D+ PYFRIFNP QG++FDP G F++ Sbjct: 352 INWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDPNGEFVK 411 Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +W+P L VP ++IH P ++ +L +Y PIVDHK A L + KK Sbjct: 412 YWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALKAFEFTKK 470 >gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. mediasiatica FSC147] Length = 499 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 200/482 (41%), Gaps = 29/482 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+TDN AL A D ++ ++I PE W+Q +S RQ F+ L ++ Sbjct: 1 MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G D++E + + + ++ +++ + + + ++ Sbjct: 59 NTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ ++ + + + + +++A + + ++ P Sbjct: 115 K----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIPT 170 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 S + D G AL IL F ++ Y ++ P S+LS Sbjct: 171 AESLGLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PY++ G +S ++ + + + ++ K S S+L+ L W + + P Sbjct: 226 PYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ + + + +AWK TG+P+IDA MR L GW++ R+R + S Sbjct: 286 SIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMRAMLMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L +DWR+ Y D + + Q +G + RI+NP Q D Sbjct: 346 FASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FIR WLPEL NV + IH P SL+YP P +D K+A + Y +K Sbjct: 404 PNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDEKQARKFAADNIYKIRK 460 Query: 480 QS 481 S Sbjct: 461 SS 462 >gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 681 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VI VFI PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + D + L T LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I SF+ +L P + + + ++ F + + LP I Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110] Length = 515 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 162/490 (33%), Positives = 235/490 (47%), Gaps = 28/490 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN ALY A +V+ VF+ R+ FI SL++ Sbjct: 13 PKGLMWFRRDLRVDDNAALYHALRAC-RQVVCVFVFDRAILDPLPRIDRRVEFIRESLVE 71 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L +IE + + V +F NR E + + RD + L Sbjct: 72 LEEELRALSGGLIVRHAH----AIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGAL 127 Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNL------VQADLRSLPVP 180 + + + +LN Q Y V+TP+++A + + Sbjct: 128 ANAGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADAL 187 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A TP+ + + + L + +++ Y R+ PA++ Sbjct: 188 APPPAAHRTPAPSLEDLGFGRSNLSELGIPTGSQGAAALFEDFFQRIDRYDAARNFPAVR 247 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S L +L G +S RQ + F+ GA +WL ELIWREFY ++ +P Sbjct: 248 GPSYLGVHLRFGTVSIRQLAGVAHQLFLQGDA----GAAAWLGELIWREFYFQILVHFPH 303 Query: 301 VC---MGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 V K F P +KI+W+ H Q AW QG TG+P++DAAM Q+N G+MHNRLR Sbjct: 304 VHSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLR 363 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL KDL +DWR GE YF L D +LASNNG WQWA+S+G D+ P+FRIFNP Q Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQ 423 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 +RFDP+G FIR +LP+L + IHAP + L YP P+VDH +A Sbjct: 424 SERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEARE 483 Query: 469 HTLNQYYAAK 478 T+ +Y A + Sbjct: 484 QTMRRYAAVR 493 >gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max] Length = 634 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ V++ P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 65 SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L P + + + + + + F K + + P I G + Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIE 181 Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + G +NA LR+F + + +Y ++R + TS Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + A +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I +S Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +FD Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470 P+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480 Query: 471 LNQYYA 476 + + + Sbjct: 481 IFKMWE 486 >gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1] Length = 477 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis WY96-3418] Length = 464 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 151/488 (30%), Positives = 226/488 (46%), Gaps = 34/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + W R DLR+ DN ALY + I +FI Q I + + Sbjct: 1 MSKK----IAIHWFRQDLRLADNPALYQVSQADET--ITIFILDKNQ----DIGSASKLW 50 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + SL K + +E + + +T ++NR Y+ + RD Sbjct: 51 LHHSLNSLNSSLDNKL-------NFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRD 103 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRS 176 +++ LQ I + + L + P YKVYTPF + + + Sbjct: 104 TQIKQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPN 163 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 S + +Q I + IGE + IL +F KV Y RD Sbjct: 164 FSYLRKLNNSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDF 223 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + TS+LSPYL G +SP Q +N + L + ++ EL+WR+F + + Sbjct: 224 MSTDSTSKLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIY 278 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +YP K + +W+ D LL+ W++G TG PI+DA MR+L G+MHNR+RMI Sbjct: 279 YYPE-LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMI 337 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q + Sbjct: 338 VASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAE 397 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470 +F+ +IR ++PEL +P + I P + L NYP PIVD KK+ Sbjct: 398 KFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRA 456 Query: 471 LNQYYAAK 478 L + K Sbjct: 457 LQLHNQIK 464 >gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia] Length = 681 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VI VFI PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + D + L T LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I SF+ +L P + + + ++ F + + LP I Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera] Length = 681 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 142/493 (28%), Positives = 221/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VI VFI PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + D I L T LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I SF+ +L P + + + ++ F + + LP I Sbjct: 116 KEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GWMH+R+ Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV D K Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474 Query: 466 AC-HHTLNQYYAA 477 A L++ + A Sbjct: 475 ARLQEALSEMWQA 487 >gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus] gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus] Length = 587 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium DG1235] Length = 522 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 107/492 (21%), Positives = 184/492 (37%), Gaps = 41/492 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLR+ D++ L+ A V+ ++I P + I+ FI SL + Sbjct: 7 SIVWFKRDLRVHDHRPLFEASRL--GPVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G H+ + + E S +LF + + R Sbjct: 65 TSLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTK 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + + + + Q P ++ P Sbjct: 121 TQRIQWIEYPQNGVIRRLTTRDGWADRWHERM------KVEQISAPKHIAPILKSQSPTD 174 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247 + R + GE A L F +E+ Y ++ P TS LSP Sbjct: 175 FPKVLRTPPAN----PSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLK---------------EEFVDLLIKPKSGAFSWLNELIWREFYR 292 YL+ G +S + E+ S+L+ W + Sbjct: 231 YLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCHFI 290 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + PS+ + L+AW+ G+TG+P +DA +R LNT W++ R Sbjct: 291 QKLEDQPSIEFKPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWINFR 350 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R + SF DL +DWR +++ LD + + Q +G + RI+NP Sbjct: 351 MRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYSQIQ--MQSGTTGINTLRIYNPI 408 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 QG+ DP+G FI+ W+PEL +P +++H P + L +YPLPI+DH +A Sbjct: 409 KQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDHAEA 468 Query: 467 CHHTLNQYYAAK 478 ++ A + Sbjct: 469 IRKARVKFKALR 480 >gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2] gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Burkholderia multivorans CGD2M] Length = 476 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 146/461 (31%), Positives = 225/461 (48%), Gaps = 10/461 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V R DLR++D+ AL AAC DA V+ V++ TP++ A +++ SL Sbjct: 1 MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L Q+G Q +D + + +++ R+YE + D L+ Sbjct: 60 SLDRALRQQGGRLLVMQ----NDPTIAVPALARAVGAQCVYWTRRYEPAAIACDAALKSA 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + + +S+ ++ P + + Q Y+V+TPF + L +L P +T Sbjct: 116 LRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMT 175 Query: 186 GPVTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + + GE A L +F E + Y + RD PA GT Sbjct: 176 TDDSTAVEAIGLLPRVRWDAGLAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPARMGT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS +L G ++P Q L+E + + +L EL WREF HL+ +P Sbjct: 236 SRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAHHLLYHFPHTT 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + D+ L W+QG TG P++DA MRQL GWMHNR+RM+ ASFL Sbjct: 296 DANFDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L WR G +F L+D DLA+N GWQW A G D+ PYFR+FNP +Q +FDP Sbjct: 356 KNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 +++ WLPEL+ +P +H P + YP +VD Sbjct: 416 AYLKRWLPELSALPANVLHQPWKHPAALS-ACGYPASMVDL 455 >gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11] Length = 477 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38] Length = 486 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 108/483 (22%), Positives = 188/483 (38%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+ D++AL+ A S K + ++I P + S R FI SL + Sbjct: 1 MKVVWFKRDLRLHDHEALHEALSTS-GKTLLLYIFEPSLMKDIHYSQRHFDFIKQSLEAL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK L + Q +++ + +++ +++ I L +L Sbjct: 60 QKELQKYHTQILIIQ----GEAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLL 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I N Y K L V I + Sbjct: 116 KEKGIIWNEYITNGVIRGIKNRKNWKEDWYDYMDKDC---LPFNPTPRSFVKYIEIEELE 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 ++P G AL + F +E+V Y P +G S+LS Sbjct: 173 NAFDVPSIKTVHNPNF---QKGGVPTALRYMNSFFEERVQNYSNHISKPELGRKGCSRLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++ G +S RQ + + E K + F+ + L W+ + ++ Sbjct: 230 PYIAWGNISIRQVYTKAWEMHQQGKFKRQISNFA--SRLRWQAHFIQKFEMESTMEFIAV 287 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + +AW G TG P++DA MR LNT G+++ R+R + SF L Sbjct: 288 -NKGYRNLIQRVNEKYHKAWITGKTGVPLVDACMRCLNTTGYLNFRMRALVVSFYTHHLF 346 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ + Q LD + + Q A G + R++NP D GTFI+ Sbjct: 347 QPWQNCSPHLAQQFLDFEPGIHYPQIQMQA--GVTGINTLRVYNPVKNSYEHDADGTFIK 404 Query: 427 HWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +P ++IH P L ++ +YPLPIV+ ++A + + +++ +K Sbjct: 405 KWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKFSSDFFWSMRKN 464 Query: 481 SLL 483 + Sbjct: 465 ESV 467 >gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis] Length = 589 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 + TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQMYQQ 490 >gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62] Length = 477 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 161/478 (33%), Positives = 237/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIV++ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQTLFLYEASKE 466 >gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max] Length = 634 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ V++ P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALTAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 65 SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L P + + + + + + F K + + P I G + Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIE 181 Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + G +NA LR+F + + +Y ++R + TS Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + A +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I +S Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +FD Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470 P+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480 Query: 471 LNQYYA 476 + + + Sbjct: 481 IFKMWE 486 >gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa] Length = 588 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 474 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 157/477 (32%), Positives = 231/477 (48%), Gaps = 16/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L A V+ +F ++ I++ + ++ L +QK Sbjct: 6 LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G IE + +++N E +RD+ +++ L+ Sbjct: 65 RYKQIGSQLLI----MSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPAIRL 184 I LL + + + Q L L+ L ++ Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T + ++P F + + GE AL L KF + Y EQR+ P++ GTS Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 QLS L G + R W + +E + + +W E+ WREFY+++M YP + Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELE 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G P+ + W + QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDL +NNGGWQW+AS+G D P RIFNP Q +++DP+G Sbjct: 360 KDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYDPEG 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+ EL +V TQY+ + ++ YPLPIVDHKK + Y K Sbjct: 419 EYIRQWVCELRSVDTQYLVT-GKIPAEEREAIGYPLPIVDHKKQQQLFKDLYREQKN 474 >gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM 684] Length = 475 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 137/483 (28%), Positives = 217/483 (44%), Gaps = 29/483 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN AL A VI ++I E + A +++ SL + + Sbjct: 10 IMWFRQDLRLHDNPALLTATRL--GPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQ 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +F+ + L+ + +NR YE + RD++++++LQ Sbjct: 68 QLDGHLQLFR-------GPADTLLEQLVQHYDCRTVTWNRCYEPWRINRDRIIKEKLQGL 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI-----QNLVQADLRSLPVPAIRL 184 I D+ L P +L Y+++TPF + ++ + Sbjct: 121 GITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVRSPLPRPAEIALAAVTPY 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + R + + GE A + F +E++ Y E RD+PA S+ Sbjct: 181 SALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPHVSR 240 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP + G +S Q W+ + + + + +L WREF + +P + Sbjct: 241 LSPAIHWGEISVHQLWHDAQAIGHEDALA-------FQRQLAWREFSVTQLFHHPDMDRI 293 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W+ D+ L W+QG TG P +DA MR+L G MHNR+RM+ SFLVK+ Sbjct: 294 N-LDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVGSFLVKN 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G +F LLD DLA+N+ WQW A G D+ PYFRIFNP QG++FDP G + Sbjct: 353 LGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKFDPHGDY 412 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 RH++PEL +P +Y+ P L YP P+VD K + L+ Y + Sbjct: 413 TRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALDAYAHMR 472 Query: 479 KQS 481 + + Sbjct: 473 QAT 475 >gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803] Length = 435 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 144/479 (30%), Positives = 219/479 (45%), Gaps = 49/479 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M V++ W R DLR+ DN L AA D V+ +FI E + + F Sbjct: 1 MSKK----VNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTF 55 Query: 61 IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 I+ L +++ +L + G + + + + K+F NR YE R Sbjct: 56 IFEELQEMRSTLQEDHGSSIAIF----YRTPEKVFKNLISDYEIEKVFTNRDYEPYAKER 111 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D+ + K L I + F D V+ ++ Y VYTP++ + + DL Sbjct: 112 DQKIAKILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDLDFHY 171 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + +++ Y ++RD PA Sbjct: 172 TTRYMDNFYQNSRLPNLSLADIGFKKSSLKVPDYKVTPGLIKD--------YKDKRDYPA 223 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++GTS+L P+L G +S RQ EE ++L+EL+WREF+ ++ + Sbjct: 224 VEGTSRLGPHLRFGTVSVRQMIRDADEESNK----------TFLDELVWREFFMQILFHF 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F ++IEW + + WKQG TG+P++DA MRQLN G+MHNR+RM+ Sbjct: 274 PDTVT-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVG 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++F Sbjct: 333 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D +I+ W+PE + +YP +VDHK+A L Y A Sbjct: 393 DKDKEYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432 >gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus c2] Length = 507 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 110/480 (22%), Positives = 187/480 (38%), Gaps = 29/480 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR++D+ AL A V+ ++I PE W+Q +S RQ F+ A L ++ Sbjct: 1 MNVVWFKRDLRLSDHTALARAAKQ--GPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + I F +++E L S + +T L+ +++ R Sbjct: 59 KTVAQDRSIHFVI----KVGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + N + + Y ++ + LP + P Sbjct: 115 QYHHIPWHEPAQHGVVRRLANRSGWAARWYRQ---------MKQPIAELPPVIHSIDEPS 165 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 P + + G AL +L F E+ Y P + S+LS Sbjct: 166 DSWPSPADLGWVNAETAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEE-------FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 P+L+ G +S R+ + ++ S S+ L W + + P Sbjct: 226 PHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDEP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + E + +AW+ G TG+P++DA MR L GW++ R+R + S Sbjct: 286 RIEFCNLHPAYEGLRESEFNPAFFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAMVMS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F L + WR Y D + + Q +G + RI+NP QG D Sbjct: 346 FASYHLWLHWRQPALYLARMFTDYEPGIHYS--QAQMQSGTTGINTLRIYNPIKQGIDHD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P+G FIR W+PEL ++ +IH P NYP PIVD +A + Y +K Sbjct: 404 PEGVFIRRWVPELMDLDRTWIHTPWLAPSP---PTNYPRPIVDEVQARKAAAEKIYQLRK 460 >gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum] Length = 597 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 135/490 (27%), Positives = 226/490 (46%), Gaps = 26/490 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL+ Sbjct: 3 MNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL G + D +++ L + TK+ +N Y+ + RD ++++ Sbjct: 61 HLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEK 117 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + + L P I + + + + PF + ++ P I Sbjct: 118 LVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQ 177 Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 G V +I ++ + G + L +F + + +Y R Sbjct: 178 GKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGG 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPY+ G LS R+ + + + + I + A +L + +RE+ R+L Sbjct: 238 DSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLC 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R+ Sbjct: 298 FSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRV 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + G Sbjct: 357 IVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLG 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH- 468 +++DP G +IR WLPEL +P ++IH P +L NYP PI+D A Sbjct: 417 RKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQ 476 Query: 469 --HTLNQYYA 476 + + + Sbjct: 477 LTQAIFKMWE 486 >gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583] gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104] gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309B] gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0309A] Length = 477 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa] gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa] Length = 680 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 136/492 (27%), Positives = 220/492 (44%), Gaps = 28/492 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+AVF+ PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + DS+ L T+L +N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I ++ L P + + + + + F + + + LP I Sbjct: 116 KEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++ F+ + + + G NA L F + Y R Sbjct: 176 ISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + ++ + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 LSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ ASF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV A Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474 Query: 468 ---HHTLNQYYA 476 L++ + Sbjct: 475 VRLEEALSEMWQ 486 >gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200] gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102] gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031] gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312] gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF] Length = 477 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max] Length = 642 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 26/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA + V+ V++ P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALTAAAK--EGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + + L + TK+ +N Y+ + RD ++++L + Sbjct: 65 SLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L P + + + + + + F K + + P I G + Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDIVSVVPPWQLIPAEGKIE 181 Query: 190 PSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + G +NA LR+F + + +Y ++R + TS Sbjct: 182 ECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGESTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + A +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + WN D + + W+QG TGFP++DA MR+L GW+HNR+R+I +S Sbjct: 302 -FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK LL+ W+ G +YF LLD DL S+ GWQ+ + D R+ NP IQG +FD Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH---T 470 P+G ++R WLPEL +PT++IH P +L NYP PI+D A Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480 Query: 471 LNQYYA 476 + + + Sbjct: 481 IFKMWE 486 >gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G Q ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIQTH---NTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum JL354] Length = 467 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 230/482 (47%), Gaps = 30/482 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ DN ALYAA +I VF+ E+ +++ SL Sbjct: 3 SPQIVWLRRDLRLADNPALYAAAQA--GPIIPVFVLDDERTGDRKYGDASRWWLHHSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +S + + DS+ L + + + NR YE + L+K L Sbjct: 61 LARSFGRHNASLILRR----GDSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182 + D + L+P G+ + YK+YTPF + + + A + Sbjct: 117 PEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRDDLPAPETISQPGDL 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + ++ + + IGE A L + V Y E R++P++ T Sbjct: 177 PPSDDLADWSLLPTNPDWSTEMAKFWSIGEDAAHERLDW-WADHVGEYDEGRNLPSVDQT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQ+SP+L G +SP Q W+R+K++ D G ++ +ELIWR++ ++++ +P Sbjct: 236 SQMSPHLHWGEISPVQIWHRMKDKRSD-------GWRTYESELIWRDYAQNVLCQFPRYP 288 Query: 303 MGKPFIP------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 W + L+AW+ G TG+PI+DA MRQL IGWMHNR+RMI Sbjct: 289 EESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAIGWMHNRVRMI 348 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL+K LL+DWR GE +F L+D D ASN WQW A TG DS + RI P Q + Sbjct: 349 AASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLSQSE 408 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD ++IR W+PEL ++P IH P N +YP I+ HK+A L Y A Sbjct: 409 KFDA-ASYIREWVPELADLPDSEIHDPSDKCRPN----DYPAKIIGHKEARERALEAYRA 463 Query: 477 AK 478 K Sbjct: 464 MK 465 >gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 511 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 107/464 (23%), Positives = 183/464 (39%), Gaps = 27/464 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLRI D+ L A S+A +I ++I PE W+Q S R HFI+ L + Sbjct: 7 IVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCLCDLDS 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++ G D+ E + L+ V+ ++ + + + + ++L Sbjct: 66 ALAEMGQNLIV----KVGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVEKLCLN 121 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 P ++ + + ++ P+ R Sbjct: 122 D----GIALHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCRSDVLPAK 177 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPY 248 + I + G + A+ LR F + Y+ P + S+LS + Sbjct: 178 NGPIFCDIP----IGTVQKGGRKQAVADLRSFLNYRSREYLYHISAPDLSEFHCSRLSAH 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMG 304 L+ G LS R+ + + L K ++ + L WR + + P + Sbjct: 234 LAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFGSRLAWRCHFVQKIEDQPEIETH 293 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + E + QAW +G TG+P +DA MR L GW+ R+R + SF Sbjct: 294 CMHPAFEGLREDEHNDLHFQAWARGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQ 353 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+ ++ D + + Q +G + R++NP Q DP G+F Sbjct: 354 LWLDWRVTGDHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPSGSF 411 Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 IR W+PEL NVP ++IH P W L +YP PI++ Sbjct: 412 IRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455 >gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries] gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries] Length = 587 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL 2338] gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL 2338] Length = 448 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 205/466 (43%), Gaps = 22/466 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + DLR+ DN L AA +V+ +F+ + R S R++ F+ SL Sbjct: 1 MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L G + ++ + + ++ +RR L + Sbjct: 59 DLDENLRGLGGRLVLRR----GALVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEA 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D V+ K + ++ ++ R RL Sbjct: 115 LSAQRRELRCHDEVVTVLAPGRVTPGGADKDHFTVFTPYLRRWLETGKRPPAAKPRRLRL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P S PR D +P GE ++ V Y E+ D A TSQLS Sbjct: 175 PSRLSIGPRPAGGS---ADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLAADATSQLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS R+ +R G +++ +L WR+ + H + + + Sbjct: 232 PYLHFGCLSARELADRAGR---------GEGPEAFVRQLAWRD-FHHQVLAARPEAVHED 281 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + P + W++D+ L+AWKQG TG PI+DA MRQL +GWMHNR R+IT SFL K L Sbjct: 282 YRPRGD--RWHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITGSFLTKSLY 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR G +F L+DGD+A+N WQW A TG D+ P R+ NP Q R+D G ++R Sbjct: 340 LDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRP-NRVLNPLRQADRYDAGGDYVR 398 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 W+PEL + +H P D L YP PIVD +A L+ Sbjct: 399 RWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444 >gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD] gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria AMMD] Length = 525 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 155/495 (31%), Positives = 241/495 (48%), Gaps = 23/495 (4%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 A ++++ +VW R+DLR+TD AL A S ++ V++ + ++ Sbjct: 27 SAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWWL 85 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +L + +L++ G + D+ ++ +++NR+Y + D Sbjct: 86 HGALAALDAALARHGGHLLLLR----GDAQREIERIVHDTGAAAVYWNRRYAQPQRDADA 141 Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLR 175 L+ L+ R +S + S+L P ++ A ++V+T + +A+ ++ + R Sbjct: 142 ALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVMAPLPEPER 201 Query: 176 SLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P R + P D+ D E A L F + Y Sbjct: 202 IAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGY 261 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + RD P TS+LSP+L G +SPRQ W+ ++ +GA +L+EL WREF Sbjct: 262 ADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELGWREF 321 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P++ F + + W D L+AW++G TG+P++DA MR+L T GWMH Sbjct: 322 SHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMH 380 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFN Sbjct: 381 NRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFN 440 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHK 464 P QG++FDPQG ++R W+PEL + IHAP L L+YP PIVDH Sbjct: 441 PVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHD 500 Query: 465 KACHHTLNQYYAAKK 479 A L+ K Sbjct: 501 GARRRALDALATLPK 515 >gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 455 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 210/472 (44%), Gaps = 20/472 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L D+V+ + F + + +L P Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S+ D + GE+ ++ + + Y + D A TS+LS Sbjct: 176 DGVASDPLPDRDSVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S + +R +E+ G +++ +L WR+F+ ++A P Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASFL K L Sbjct: 289 ---RPRHDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD +G ++R Sbjct: 346 VDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL V IH P + +L+YP P+VD +A ++ A+ Sbjct: 405 RWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEAR----ARFERAR 452 >gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str. Paraca] Length = 474 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 165/476 (34%), Positives = 237/476 (49%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++NR E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184 I +L + + + YKVYTP+ + IQ + L + + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P D F +P GE A L FC +Y Y E R+ PAI GTS Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W EL WREFY+ + +P++ Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIMALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473 >gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98] gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043] Length = 477 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012] Length = 477 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 161/478 (33%), Positives = 234/478 (48%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y RD P TS LS Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIRQELASAPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860] Length = 477 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] Length = 456 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 20/471 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV +V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L Sbjct: 3 SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +G + + Q + +R++ + + L Sbjct: 62 LDTGLRDRGGRLIVRRGGTAREV----KRVVEQTGADSVHIAAGVSGYAAQREERIREAL 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D+V+ + F + + +L P Sbjct: 118 AGTGCELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAPRTVRVPD 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + D + GE+ ++ + + Y + D A TS+LSP Sbjct: 178 GVSGDALPDRDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSP 237 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S + NR +E+ G +++ +L WR+F+ ++A P Sbjct: 238 HLHFGTVSAAELANRAREKG-------GPGGEAFVRQLAWRDFHHQVLAARPDASWSDY- 289 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TASFL K L V Sbjct: 290 --RPRHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYV 347 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFDP G ++R Sbjct: 348 DWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRR 406 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL V +H P + ++YP P+VD +A +++ A+ Sbjct: 407 WVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEAR----SRFERAR 453 >gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula] Length = 587 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + + KL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP Y +++ ++P GE AL L + + K + Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus XylebKG-1] Length = 455 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 210/472 (44%), Gaps = 20/472 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L D+V+ + F + + +L P Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S+ D + GE+ ++ + + Y + D A TS+LS Sbjct: 176 DGVASDPLPDRDSVKNLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S + +R +E+ G +++ +L WR+F+ ++A P Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASFL K L Sbjct: 289 ---RPRHDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD +G ++R Sbjct: 346 VDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL V IH P + +L+YP P+VD +A ++ A+ Sbjct: 405 RWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEAR----ARFERAR 452 >gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 530 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 122/492 (24%), Positives = 200/492 (40%), Gaps = 31/492 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V + W R LR+ DN AL AA NS A++ +FI P + +S + F+ SL + Sbjct: 4 VSIHWFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLKDL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +SL + + E + +VT+L + E R +++ + Sbjct: 63 DESLKKLNSRLFVVR----GRPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAE 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 H V L I+ + + L+ +L + Sbjct: 119 HGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPKLEDMKDCC 178 Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQ----NALHILRKFCKEKVYYYVEQ 233 TP +Y + + ++P GE +++ + E Sbjct: 179 TPVKEDHDLEYGTPSYEELGQDPKTAGPHLYPGGETEALARLDLHMKRTSWVCNFKKPET 238 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 T+ LSPY+ G LS R W +L E + S +L+WREF+ Sbjct: 239 HPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGRK--HSDPPVSLHGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 A P+ + P +++W+ + L+AW++G TG+P IDA M QL T GW+H+ Sbjct: 297 AGAGIPNFDRMEN-NPVCVQVDWDNNQEYLRAWREGQTGYPFIDAIMTQLRTEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N WQW +++ +FR+++P Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQWLSASAFFHQ-FFRVYSPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L YI+ P + +YP PIV+H+K Sbjct: 415 TFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEKV 474 Query: 467 CHHTLNQYYAAK 478 L + AA Sbjct: 475 YKRNLERMKAAY 486 >gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium psychrophilum JIP02/86] Length = 428 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 210/470 (44%), Gaps = 45/470 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++ W R DLR+ DN L+ A NSD ++ +FI Q + FI+ L ++ Sbjct: 1 MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK L +KG + E + + +V ++ N YE +RDK L + Sbjct: 60 QKKLQEKGKSLAVF----YGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFA 115 Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + D V+ + + Y VYTP+ + Q L++ Sbjct: 116 NHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENYLDKIV 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P F+ + + Y R+ P++ TS L Sbjct: 176 THPYPFLSLESIGFETSK---------ITVASYDISENLIDNYEATRNFPSLNKTSFLGI 226 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +S R+ + + ++ ELIWREF+ ++ +P K F Sbjct: 227 YLRFGAVSVRKMMQEAIKSKNE----------TFFKELIWREFFMQILWHFPHTI-NKSF 275 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I W L Q W QG TG+P +DA MR+LN G MHNR+RMI ASFL K LL+ Sbjct: 276 KEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLI 335 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD +I+ Sbjct: 336 DWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL + +YP PIV+HK A L Y A Sbjct: 396 WIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426 >gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154] Length = 478 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 168/482 (34%), Positives = 237/482 (49%), Gaps = 21/482 (4%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS ++W R DLR++DN AL A NSD K++ VF +Q + QS F +AS+ Sbjct: 1 MSKTSVMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQPT-VNQSSF-FASV 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q++KSL ++ I D + R + E + Sbjct: 58 QQLKKSLKKQNINLYVFYGE-LKDMFNHIKKQLPHWRDLYFNRDEHGYGGERDQVITKYC 116 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + D L I Y+V+TP+ K + + + + Sbjct: 117 QEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTNISQEH 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 V+ D IGE A IL F + K+ Y + RD+P++ T Sbjct: 177 LTVSTLEQDSMLDALIDEKHSYAYVDQIGEDKARKILSDFIENKLTQYDQNRDVPSLDAT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS YL G +S R + +K+ G +++ EL WR++Y + A +P Sbjct: 237 SHLSRYLRTGEISIRVVYEGIKQAPDS------DGRSTFIKELCWRDYYNMIYATHPQQN 290 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P +I W D W+ G+TGFPI+DAAMRQLN GWMHNRLRMI ASFL Sbjct: 291 ES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRLRMIVASFLT 349 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDLL++W+ GE YF +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FDPQG Sbjct: 350 KDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDPQG 409 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 FI+ ++PEL +P IH P+ + + +YP PIV+HK A + + Y Sbjct: 410 LFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTARINAIAAYEK 469 Query: 477 AK 478 +K Sbjct: 470 SK 471 >gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22] Length = 453 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 122/468 (26%), Positives = 205/468 (43%), Gaps = 21/468 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V DLR+ D+ L AA S +V+ +F+ + + + F+ L Sbjct: 1 MNVSVVLFTCDLRLHDHPPLRAALDGS-RQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLE 124 + L ++G D +E + + ++ + Sbjct: 60 DLDTGLRERGGRLVVRS----GDVVEEVCKVAAEADADEVHLAADVSAYAQRREERLRRA 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + PG++L + + V+TP+ + ++ + P Sbjct: 116 LEAEGVRLHVHATVTSAVDPGAVLPASTDHFAVFTPYFGHWSRQRLR---EASAAPRAVH 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + GE + + + Y ++ D A TS+ Sbjct: 173 VPDGVGSEELPSRAGLSGVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRHDDLAGDATSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LSP + +R + GA +++ +L WR+F R ++A P+ Sbjct: 233 LSPHLHFGTLSPVELVHRSRRAGG-------PGAEAFVRQLAWRDFNRQVLAARPAAAKA 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W +AW+ G TG+P++DAAMRQL GWMHNR R++TASFL K Sbjct: 286 DY---RAKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKT 342 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G +F+ L+DGD+A+N WQW A TG D+ P RI NP Q KR+DP G + Sbjct: 343 LYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRP-NRILNPVTQAKRYDPDGEY 401 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 +R W+PEL ++ +H P + +L+YP P+V+ + L Sbjct: 402 VRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVELAEGRERFLR 449 >gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis] Length = 2050 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 126/480 (26%), Positives = 195/480 (40%), Gaps = 33/480 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + ++ VFI P + + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALMAALRDCK-ELYPVFILDPH-LHNKSVGINRCRFLIGALRDLD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + E Q +VTKL Y E + RD+ + + Sbjct: 63 LSLRNLNSRLFVVR----GKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEE 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + S L + T I + R + P++ V+ Sbjct: 119 SGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGVS 178 Query: 190 PSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + FP GEQ AL L K+ + ++ Sbjct: 179 TPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQT 238 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + T+ LSPY++ G LS R W RL + + + S +L+WREF+ Sbjct: 239 SPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGKK--HSAPPVSLHGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +++W+ DS L AW++ TGFP IDA M QL GW+H+ Sbjct: 297 ASVGIPNFNKMAD-NPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLDGD A N G WQW +++ +FR+++P Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ-FFRVYSPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P QYI+ P + +YP PIV H++ Sbjct: 415 AFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKHEEE 474 >gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635] gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630] Length = 477 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 652 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 137/489 (28%), Positives = 227/489 (46%), Gaps = 26/489 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ SL+ Sbjct: 5 SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL G + + +IE L TKL YN Y+ + RD ++++L Sbjct: 63 LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +S++ +L P I + + + + + ++ P + G Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAG 179 Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V +I + + G NA L +F ++ ++ Y ++R Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGN 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + ++ + + + +L + RE+ R+L Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 300 NFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P IQG Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469 +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ A Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478 Query: 470 --TLNQYYA 476 + + Sbjct: 479 TEAIFMMWE 487 >gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC 29413] Length = 479 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 163/483 (33%), Positives = 235/483 (48%), Gaps = 19/483 (3%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + L W R DLRITDN L A +S +KV+ VF P + ++ + ++ SL Sbjct: 1 MSDLVLFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++Q+ Q G + D ++ + +F+N E RD+ + Sbjct: 60 QELQQRYVQAGSQLLILR----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIA 115 Query: 126 RLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ + I D +L P I + + Y VYTPF K + +L Sbjct: 116 TLKDKGIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGL 175 Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P F D + GE A L +F + + Y EQR+ Sbjct: 176 TEAEQELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNF 235 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P + GTSQLS L GV+ R W L+ + + +W EL WREFY+H M Sbjct: 236 PGVNGTSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAM 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + G + + W + QAW +G TG+PI+DAAMRQ+N GWMHNR RM Sbjct: 296 YNFPELADG-AYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRM 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFL KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP Q Sbjct: 355 IVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQS 413 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 ++FDP +IR W+PEL ++ T+Y+ ++ Y PIVDH+K +Y Sbjct: 414 QKFDPDAEYIRQWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQ 472 Query: 476 AAK 478 K Sbjct: 473 QQK 475 >gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 474 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 238/476 (50%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF PE I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184 I +L + + + YKVYTP+ + IQ + L + + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P D F +P GE A L FC +Y Y E R+ PAI GTS Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W EL WREFY+ + +P++ Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIIALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 IG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473 >gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus] Length = 587 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +T+L E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii] Length = 586 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +TKL E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana] Length = 612 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 217/485 (44%), Gaps = 29/485 (5%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G Q ++I + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSDLTLIQTH---NTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + L P I + + + + K + +++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLM 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 +T + + + + G NA +L +F ++++ Y + Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 TS LSPYL G +S R + + + D + + A +L + RE Sbjct: 236 SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLRE 295 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + R++ +P + + W+ D +AW+QG TG+P++DA MR+L GWM Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF L D DL + GWQ+ + + D R+ Sbjct: 355 HNRIRVIVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLD 414 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 NP +QG ++DP+G +IR WLPEL +PT++IH P +L NY PIVD Sbjct: 415 NPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474 Query: 464 KKACH 468 A Sbjct: 475 DTARE 479 >gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 131/488 (26%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA M++L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346] Length = 477 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 161/478 (33%), Positives = 235/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKA A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 716 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica] gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica] gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica] gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica] gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica] gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica] gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 PKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188] Length = 477 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSTC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera] Length = 641 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 137/489 (28%), Positives = 226/489 (46%), Gaps = 26/489 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN AL A + V+ VFI P++ Q ++ SL+ Sbjct: 5 SRTVVWFRRDLRVDDNPALATAAK--EGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMH 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL G + + +IE L TKL YN Y+ + RD ++++L Sbjct: 63 LKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKL 119 Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +S++ +L P I + + + + + ++ P + G Sbjct: 120 MELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEFVSLLPPWRLVPAAG 179 Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 V +I + + G NA L +F ++ ++ Y + R Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXRLKVEGN 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ + ++ + + + +L + RE+ R+L Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +PS +P + + W+ +AW+QG TG+P++DA MR+L GW+HNR+R+I Sbjct: 300 NFPS-THERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P IQG Sbjct: 359 VSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGS 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH- 469 +DP+G ++RHWLPEL VPT++IH P +L NYP PI++ A Sbjct: 419 NYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERL 478 Query: 470 --TLNQYYA 476 + + Sbjct: 479 TEAIFMMWE 487 >gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1] Length = 473 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L L ++ EL WR+ + +++ + Sbjct: 233 LRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes] Length = 586 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis] Length = 616 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 121/498 (24%), Positives = 197/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R T+ LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + A P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FF-YTAATNNPCFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P GKR DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 541 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 99/479 (20%), Positives = 174/479 (36%), Gaps = 24/479 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR++D+ AL A V+ +++ PE W+Q SARQ +F+ ++ ++ Sbjct: 38 MQVVWFKRDLRVSDHPALAQASE--VGPVLPLYVVEPELWQQPDASARQWNFVAETIAEL 95 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L + G + L + + L+ + + + + Sbjct: 96 RSDLGELGQPLIVR----VGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQVAAWC 151 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAIRLTG 186 + + + + + L D +P R G Sbjct: 152 RDHGVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALKHIDTEPGYIPTGRDLG 211 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + R +D + + R+ R LS Sbjct: 212 LRDDQCVGRQAGGRAAGLDRLNSFLTRRGERYQREMSSPLEGAVACSR----------LS 261 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIK---PKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 PYL+ G LS R+ W + + L + S+ L W + + P + Sbjct: 262 PYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLEDEPRIEF 321 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + D+ LL AW G TG+P +DA MR L GW++ R+R + + Sbjct: 322 ENLHRLYDGLRPRAPDAELLGAWSNGETGYPFLDACMRSLQATGWLNFRMRAMVMATASY 381 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR E+ D + + Q +G + RI+NP QG DP+G Sbjct: 382 HLWLDWRAPGEHLARMFTDYEPGIHWS--QVQMQSGTTGINTVRIYNPVKQGYDQDPEGL 439 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR WLPEL + Q++H P + D+ YP + DH A + + ++ + Sbjct: 440 FIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERVFDHLAAAKAARERVWGVRRSA 498 >gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3] Length = 473 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L L ++ EL WR+ + +++ + Sbjct: 233 LRTGELSIRTIWQELASVPSSL------SKETFKKELAWRD-FYNMIYSAFPQQKEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2] Length = 473 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 162/477 (33%), Positives = 235/477 (49%), Gaps = 24/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 1 MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q + H + ++ + +++N +RD+ + + Sbjct: 58 RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112 Query: 130 RVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I L I + Y+V+TP+ + + + + + Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + + + +GE+ A L F +K+ Y +RD P TS LS + Sbjct: 173 FPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTF 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R W L L ++ EL WR+ + +++ + Sbjct: 233 LRTGELSIRTIWQELASMPSSL------SKETFKKELAWRD-FYNMIYSTFPQQKEEAIQ 285 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L +D Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ + Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405 Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462 >gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 442 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 157/481 (32%), Positives = 238/481 (49%), Gaps = 49/481 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 M T + + W R DLR+ DN LY A S V+ +FI + + Sbjct: 1 MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FI+ ++ +++++L QK + + ++ + +++ N YE R Sbjct: 60 FIHKAVSEIRQALRQKEADIMV----EYGFPEKIWENLVAGHDIAEVYTNTDYEPYATDR 115 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 DK + + L+ + I K+ D V+ IL+ Y V+TP+ +A Q L L+S P Sbjct: 116 DKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLKSYP 175 Query: 179 VPAI-RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 R S +P + F+ D FP + Y ++RD P Sbjct: 176 TKKYFRHFHQWHGSALPSLREMGFEKTDYDFPP---------ADVDDTLLKNYAKERDFP 226 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A++ TS++ +L G +S R + + ++LNELIWR+FY+ +++ Sbjct: 227 AMEATSRIGVHLRFGTVSIRDLARQARAHS-----------DTFLNELIWRDFYQQILSN 275 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V G F + I+W D + W +G TG+P++DA MRQLN IG+MHNR+RM+T Sbjct: 276 FPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVRMVT 335 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR+GE YF +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP Q ++ Sbjct: 336 ASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQAEK 395 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYA 476 FDP+ +I+ W+PE + YP P+VDHK+A L Y Sbjct: 396 FDPKMEYIKKWVPE--------------------FGTDEYPEPMVDHKEARERCLQAYKT 435 Query: 477 A 477 A Sbjct: 436 A 436 >gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus 4H-3-7-5] Length = 465 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 145/482 (30%), Positives = 218/482 (45%), Gaps = 47/482 (9%) Query: 1 MKATTAMS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57 + T MS V++ W R DLR+ DN A D V+ +FI E + + Sbjct: 24 LSYATTMSSNKVNIFWFRRDLRLDDNVGFLEALK-GDLPVLPIFIFDKEILDKLPKDDAR 82 Query: 58 SHFIYASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 FI+ +L +++ +L + +D + + +F NR YE Sbjct: 83 VTFIFETLQKMRSTLQDEHASSL----AMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYA 138 Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD+++ L+ I K+F D V+ ++ Y VYTPF+ + Sbjct: 139 KERDEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDL 198 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 ++ + L + S +P + + Y + R+ Sbjct: 199 TIHYTSQHLNNLIEHSRLPNLSLSDMGFEKSSIEV-------PEYDVTPTLIQNYEDTRN 251 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PA GTS L P+L G +S R+ + E + + +ELIWREF+ ++ Sbjct: 252 FPAQDGTSHLGPHLRFGTVSVRKMMKKAIAETNE----------IFWSELIWREFFMQIL 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P K F ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+RM Sbjct: 302 FHFP-HTKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVRM 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K LL+DWR GE YF +LLD +++SN G WQWAA +G D+ PYFRIFNP Q Sbjct: 361 LVASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQV 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 +FD Q +I W+PE H + NYP +VDHK+A L Y Sbjct: 421 DKFDKQKEYISKWIPE---------HD----------TDNYPEKMVDHKEARERCLKTYK 461 Query: 476 AA 477 A Sbjct: 462 EA 463 >gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus] Length = 587 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + RL + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum] gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum] Length = 598 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 135/490 (27%), Positives = 226/490 (46%), Gaps = 26/490 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI DN AL AA D V VFI P++ Q ++ SL+ Sbjct: 3 MNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL G + D +++ L + TK+ +N Y+ + RD ++++ Sbjct: 61 HLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEK 117 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + + L P I + + + + PF + ++ P I Sbjct: 118 LVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQ 177 Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 G V +I ++ + G + L +F + + +Y R Sbjct: 178 GKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGG 237 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPY+ G LS R+ + + + + I + A +L + +RE+ R+L Sbjct: 238 DSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLC 297 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + +P + + WN D +AW+QG TG+P++DA MR+L GW+HN++R+ Sbjct: 298 FSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRV 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P + G Sbjct: 357 IVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLG 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH- 468 +++DP G +IR WLPEL +P ++IH P +L NYP PI+D A Sbjct: 417 RKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQ 476 Query: 469 --HTLNQYYA 476 + + + Sbjct: 477 LTQAILKMWE 486 >gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 488 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 239/487 (49%), Gaps = 17/487 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + L+W R DLR+ D+ AL A AK++ VF + + ++ + + Sbjct: 10 MSDQSDHPLILLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVAY 68 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L +Q + G Q D ++ L + + E +RD Sbjct: 69 LLGCLQSLQDHYQRLGSELLVFQA----DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124 Query: 121 KLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178 + + L+ R + + + + PG +L A Y VYTPF K Q + + + Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKD 184 Query: 179 -----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVE 232 P+ P IP+ D F P+ GE+ A L F + Y + Sbjct: 185 LQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQ 244 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFY 291 R+ PA+ GTSQLS L GV+SPR W E + + +W EL WREFY Sbjct: 245 NRNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFY 304 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 +H + +P++ G P+ ++ W ++ QAW +G TG+PIIDAAM QLN GWMHN Sbjct: 305 QHCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHN 363 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R RMI ASFL+KDL+++W+ GE YFM L DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 364 RCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNP 422 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 Q ++FDP+G +IR WLP+L T + + S+NYP PIVDH + Sbjct: 423 HTQAQKFDPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFK 481 Query: 472 NQYYAAK 478 +Y K Sbjct: 482 RRYQLVK 488 >gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis] gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis] Length = 616 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 121/498 (24%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R T+ LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKMD-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P GKR DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus J-10-fl] gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl] Length = 510 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 116/473 (24%), Positives = 179/473 (37%), Gaps = 32/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + LVW + DLR+ D+ AL AA V+ ++I P +AR FI L+ Sbjct: 1 MYIQLVWFKRDLRLHDHPALSAAAAR--GPVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +L++ G +++E LD + ++ + + +R Sbjct: 59 ELRANLARLGQPLVVR----VGEAVEVLDHLVSTWPIEAIWAHEETGNLLSYARDRAVRR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + +P + + + +A + + A P L Sbjct: 115 ---------WARARGIPFHELPQNGVVRRLPSRDEWQARWEERMAAAQAQPPSALPPLAI 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGTSQ 244 P + P GE AL L F + Y + A +G S+ Sbjct: 166 DPGTIPTADELSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGCSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ G LS R + +L P W+ L E H + Sbjct: 226 LSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKLED 285 Query: 305 KP-------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + E N LL AW G TG+P +DA MR L GW++ R+R + Sbjct: 286 EPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRAML 345 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF+ DL WR + +D + + Q G RI+NP QG Sbjct: 346 VSFVAYDLWQHWREPALILARRWIDYEPGIHYS--QMQMQAGTSGNRTIRIYNPVKQGID 403 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464 DP+G FIR W+PEL +VPT YIH P + +YP PIVDH+ Sbjct: 404 HDPEGIFIRRWVPELAHVPTPYIHTPWLLDRHGQERAGCRIGRDYPAPIVDHE 456 >gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus] gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 588 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + L+ + ++ + + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta] Length = 586 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus A6] Length = 475 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 226/482 (46%), Gaps = 23/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 LVWLR+DLR+ DN AL A H A + V++ E + +++ SL + Sbjct: 7 TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRL 127 L KG + + + + S Q LF+NR+Y E D E Sbjct: 66 AAVLEAKGSRLVLRR----GKAADVISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEWAA 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184 + + SF ++L P +I A YKVY+PF +A + D +P Sbjct: 122 GNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDIPKDLPEPAAS 181 Query: 185 ------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + + + + GE+ A+ L F + Y R+IP Sbjct: 182 GRGLPASDSLGSWKLLPTSPDWSGGLAETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +GTS+LSPYL G +SP + W ++ + + + +EL WREF HL+ Sbjct: 242 TEGTSRLSPYLRFGEVSPFRVWREIRRRHPR---QVPADVGIFRSELGWREFNWHLLYHN 298 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + + + L AW+QG TG+P++DA MRQL GWMHNR+RM A Sbjct: 299 PELATRSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMAAA 358 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVK+LL DWR+GE++F L+D D A+N WQW A +G D+ PY+RIFNP Q K+F Sbjct: 359 SFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQSKKF 418 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G ++R ++PE+ + + IH P + YP P+V+ ++ L+ Y K Sbjct: 419 DAGGDYLRRFIPEIAGLEGKAIHEPWTAE-----PDGYPQPLVELPESRERALDAYQKLK 473 Query: 479 KQ 480 Sbjct: 474 DS 475 >gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi] Length = 1043 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 117/493 (23%), Positives = 189/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL + VF+ P + + F+ L + + Sbjct: 109 VHWFRKGLRLHDNPALREGVRGA-TSFRCVFVIDPWFAGSSNVGINKWRFLLQCLDDLDR 167 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + + L + T L + E RD + + + Sbjct: 168 NLRKLNSRLFVIR----GQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCKEL 223 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + +A+I ++ + + G T Sbjct: 224 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGGATT 283 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 284 PLYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 343 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 344 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 401 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+++S L W G TGFP IDA M QL GW+H+ R Sbjct: 402 ATKNPTFDKM-AGNPICVQIPWDRNSEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 460 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 461 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 519 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 520 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIAS 579 Query: 468 HHTLNQYYAAKKQ 480 + + + Sbjct: 580 RANMERIKQVYQH 592 >gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase [Arabidopsis thaliana] gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor; AltName: Full=Protein BLUE LIGHT UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL 4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana] gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana] Length = 681 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus] Length = 586 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata HTCC2501] Length = 434 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 213/471 (45%), Gaps = 43/471 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV++ W R DLR+ DN+ L A + V+ +FI E + F++ L + Sbjct: 4 SVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRLQE 62 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + + +G + +E V ++F NR YE RD+ + + Sbjct: 63 LRSRMQENQGSSLAIYH----GKPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQVGQW 118 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + I ++ + V + + + + A +L Sbjct: 119 LSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATFDSAGQLGN 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S +P F P+ + + Y + R+ PA +GTS+L Sbjct: 179 LIAHSRLPNPDLADFGFERSAIPV-------PDYDMGGKLIDAYEDNRNYPAREGTSRLG 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S RQ + E ++ NELIWREF+ ++ +P + Sbjct: 232 PHLRFGTISIRQALGKALES----------SNETFWNELIWREFFMQILWHFPRTVH-EA 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F ++I W D + W++G TGF ++DA MRQLN G+MHNR+RM+TASFL K LL Sbjct: 281 FRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASFLCKHLL 340 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +LLD ++ASN G WQWAA +G D+ PYFRIFNP Q +FD ++IR Sbjct: 341 IDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKSYIR 400 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PE + +YP +VDHK A L Y AA Sbjct: 401 EWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432 >gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4] Length = 444 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 145/469 (30%), Positives = 220/469 (46%), Gaps = 29/469 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R DLR+ D L AA ++ + + +F+ G S RQ ++A+L + Sbjct: 2 VWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLGPAG-SPRQDQ-LFANLTALDHQ 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L K +V + D + + ++ + Y RRD + +V Sbjct: 59 LDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDA----AVAEQV 107 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + PG + YKV+TP+ + +++ + + +R P Sbjct: 108 ELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPASTD-AQTVRWFDPSDKE 166 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 PR P + +GE AL +++C+ + Y ++R+ P + TS++S L Sbjct: 167 GGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLKY 226 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR L + D GA ++ +L WR+FY ++ P + Sbjct: 227 GTIHPRTMLADLSKRLGD-------GAQAYRRQLAWRDFYADILFQRPDSARKNYDDKFD 279 Query: 312 EKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 AW +G TGFPI+DA MRQL WMHNR+RMI ASFLVKDL + W Sbjct: 280 RLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHIPW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G +FMS L+DGDLASN GWQW A +G D+ P+FR+FNP QG++FDP GT++R W+ Sbjct: 340 WRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRRWV 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PEL +VP + +H K ++YP PIVDH L +Y K Sbjct: 400 PELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 443 >gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2 [Canis familiaris] Length = 587 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens] gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys] gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens] gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens] gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens] gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens] gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens] gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct] gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct] Length = 586 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 496 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 114/478 (23%), Positives = 188/478 (39%), Gaps = 34/478 (7%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + +VW + DLR D++ L+ A V+ +++ PE W+Q S+RQ F SL Sbjct: 1 MSALQIVWFKRDLRTVDHRPLFEASKC--GPVLPLYVVEPELWQQPDSSSRQWLFCRESL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +Q++L++ G + D + L+ Q + L+ + + + + Sbjct: 59 IDLQRALAEFGQPLVVRR----GDVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVA 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + + T + + Q L + P Sbjct: 115 AWAKQHGIPWTEIPQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALPRLADLDPGAIPD 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ- 244 P G + R F ++V Y P T Sbjct: 175 LPHGSMAPDPCPHRQL--------GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCS 226 Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS YL+ G LS R+ G S+ + L W + + PS+ Sbjct: 227 RLSAYLTWGCLSMREVLQ-------QSRTMQGRGVNSFGSRLHWHCHFIQKLEDEPSIEF 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I + + LQAW +G TG P +DA MR L GW++ R+R + SF Sbjct: 280 -QDFHPLMRGIRDS-NQDHLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L + WR + Q +D + + Q +G+ S+ RI+NP QG+ DP+G Sbjct: 338 NLWLPWRQSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGRDHDPEGR 395 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIRHW PEL VP YIH P +L P PIVD + ++ +A ++ + Sbjct: 396 FIRHWCPELREVPAIYIHEPW------ELGGGMPAPIVDVTTSMQAAKDRIWAVRRSA 447 >gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101] Length = 431 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 220/473 (46%), Gaps = 48/473 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 T V W R DLR+ DN L+ A SD VI +FI + + + FIY S Sbjct: 2 TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L+ + + S + + +F+N+ YE ++RD + Sbjct: 61 LQKINNELNTFESSILIKK----GKTTAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAIC 116 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L+ + C SF D V+ I Y VYTP++ ++ + Sbjct: 117 SLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEK----------YHFLG 166 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S++ F + + IG + + + ++ Y E RD PA+ TS Sbjct: 167 TVPECDSSSMHSNFAKTKFSFPDLTEIGFKRSTIKVLPHNLTQIANYKETRDFPALDSTS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S R+ N + ++L+ELIWREF+ ++ +P+ Sbjct: 227 YLSPHLRFGTVSIRKLVNWANRKNQ-----------TFLSELIWREFFIQILFSFPNCVN 275 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I+W + + W G TG+P++DA MRQLN G+MHNR+RM+ ASFL K Sbjct: 276 HN-FKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVASFLCK 334 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL++W+ GE YF +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+FD +G Sbjct: 335 HLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKGE 394 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +IR W+PE Y P+VDH A T+ Y A Sbjct: 395 YIRKWIPE--------------------FDFGYAEPMVDHAFARDRTIATYKA 427 >gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis] gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis] Length = 621 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 195/487 (40%), Gaps = 23/487 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67 ++W R LR+ DN AL AC + A V VFI P +Q + + + +F+ SL Sbjct: 7 SILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRD 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + S +G + E + R+T+L + E RD ++ Sbjct: 66 LDASFRSRGSRLLVLR----GKPEEVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLA 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S L G + + + R P + Sbjct: 122 DEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRGPACENAPSTD 181 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL------RKFCKEKVYYYVEQRDIPAIQG 241 + +P + + F G + Sbjct: 182 AATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADFKKPDTDPAAFERPA 241 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPY+ G LSPR RL E + + S +L+WREF+ + A P+ Sbjct: 242 TTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQPPV-SLRGQLLWREFFYTVGAHTPNF 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P ++I+W+ D LL AW++ TGFP IDA M QL GWMH+ R A FL Sbjct: 301 -HRMDGNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWMHHLARHSVACFL 359 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G + F L+D D N W W +++ S YFR+++P GK++DP Sbjct: 360 TRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPISFGKKYDP 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FIR +LP L ++P++YI+ P + + +YP P+VDH + + Sbjct: 419 EGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRAGCVIGRDYPHPVVDHALVSKQNIARM 478 Query: 475 YAAKKQS 481 AA + + Sbjct: 479 AAAYRSN 485 >gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus] Length = 455 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 206/472 (43%), Gaps = 20/472 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ DN L AA ++D +V+ +F+ R + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ RR++ + + Sbjct: 60 ALDAGLRHRGGRLIVRR----GEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L D+V+ + F + + + P Sbjct: 116 LADSGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVP 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S+ D + GE+ ++ + + Y + D A TS+LS Sbjct: 176 DGVASDPLPDRDCVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S + +R +E+ G +++ +L WR+F+ ++A P Sbjct: 236 PHLHFGTVSAAELVHRAREKGG-------LGGEAFVRQLAWRDFHHQVLADRPDASWSDY 288 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 W D+ + AWK G TG+P++DAAMRQL GWMHNR RM+ ASFL K L Sbjct: 289 ---RPRHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLY 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFD +G ++R Sbjct: 346 VDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVR 404 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL V IH P + L+YP P+VD +A ++ A+ Sbjct: 405 GWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEAR----ARFERAR 452 >gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] Length = 690 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 224/487 (45%), Gaps = 25/487 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 14 NIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 72 SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I ++ L P + + + + ++ F + + + LP I Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 188 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P F+ + + + G NA L F + Y + R TS Sbjct: 189 KCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 309 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FD Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470 P G ++R WLPEL+ +PT +IH P + + +L NYP PIV +A Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEA 487 Query: 471 LNQYYAA 477 L+Q + Sbjct: 488 LSQMWQL 494 >gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK] gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum PYR-GCK] Length = 449 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 229/475 (48%), Gaps = 30/475 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M ++W R DLR+ D AL AA D V+A ++ P +R+ ++Y +L Sbjct: 1 MP-AVLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATG--GSRRLQYLYDALR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++SL + ++ D + + + + + + +RRD+ + Sbjct: 57 DLRESLDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDA 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G + YKV+TPF A Q+ + S P+ Sbjct: 110 LGDVELVATGSPYLVSP-GRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESG-PPSAHWLD 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + P D P ++ P GE A ++F + + Y E R+ P + TS++S Sbjct: 168 PADVAGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMS 227 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L GA ++L EL +R+FY ++A +P Sbjct: 228 AHLKFGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRSTWWNW 278 Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 E + +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKD Sbjct: 279 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G + Sbjct: 339 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 398 Query: 425 IRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++ W+ EL +V + +H D +YP PIVDH + L +Y + + Sbjct: 399 VKRWVEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 448 >gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4] Length = 434 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 204/473 (43%), Gaps = 47/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN + A ++ V+ +FI E + + + FI+ +L Sbjct: 4 TVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETLQN 62 Query: 68 VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L + + I+ S + ++ N YE RD ++ Sbjct: 63 MRQTLQDENNSSL----AMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQSF 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I K++ D V+ ++ + Y VYTP+ K DL+ Sbjct: 119 LEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTFLNN 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + Y R+ PA TS+L Sbjct: 179 LIENTRLPNLSLSDIGFKKSSQD--------IKDYTVTPTLIQEYEATRNFPAKDTTSRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E + + ELIWREF+ ++ +P Sbjct: 231 GPHLRFGTVSVRKMVKKATAENNE----------IFWQELIWREFFMQILWHFPD-THKD 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I+W ++ +AW G TG+P++DA MRQLN G+MHNR+RM+ SFL K L Sbjct: 280 AFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L D D+ASN G WQW A +G D+ PYFRIFNPT Q +FD +I Sbjct: 340 LIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDKKYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAA 477 + W+PE + YP IVDHK+A L Y A Sbjct: 400 KQWIPE--------------------FGTDKYPEKIVDHKEARERCLKVYKDA 432 >gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11] Length = 464 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 196/465 (42%), Positives = 261/465 (56%), Gaps = 11/465 (2%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R DN AL AA N A+F+ + QW++H + Q I L++++ L Q I Sbjct: 2 RTIDNPALQAAVEN-QQPTFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNIP 60 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + + + V LF N++YE +E RD + + L + C FD Sbjct: 61 LIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESLLNTN-CSFFDA 119 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 +LP G+I+N Q YKV+TPF+KA + Q L P + D Sbjct: 120 KCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNND 179 Query: 199 YPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 F + + + ILR+FC++KV Y RD P IQGTSQLSPYL+IG + Sbjct: 180 DSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGAI 239 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 S +QC ++ + G WL+ELIWREFY HL+ FYP++ + F+ + + I Sbjct: 240 SAKQC---ALRLHLEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKYI 296 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 EW+ + + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE+ Sbjct: 297 EWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQ 356 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP QGK+FD TFI+HWLPEL Sbjct: 357 YFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELKA 416 Query: 435 VPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + IH P+ S NYP IVDH + + Y AK+ Sbjct: 417 LSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 459 >gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 681 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE] Length = 459 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 214/473 (45%), Gaps = 18/473 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V +DLR+ D+ L+AA ++D +V+ +F+ R + + F+ L Sbjct: 1 MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G + ++ + + ++ + RR++ L + Sbjct: 60 DLDAGLRDRGGRLVIRS----GEIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L D+V+ K + ++ Q LR+ + Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFAVFTPYFRSWSQVGLRTPFGAPRAVRM 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245 P P++ P + G + + + E R D A TS+L Sbjct: 176 PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRRQGLGRYEDRHDDLAGDATSRL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LSP + +R + GA +++ +L WR+F+ ++A P+ Sbjct: 236 SPHLHFGTLSPTELIHRARSAGGA-------GAEAFVRQLCWRDFHHQVLAARPAASHAD 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++AWK+G TG+P++DAAMRQL GWMHNR R++TASFLVK L Sbjct: 289 YRTRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNRGRLLTASFLVKTL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 VDWRIG +F+ L+DGD+A+N WQW A TG DS P R+ NP +Q KR+D G ++ Sbjct: 349 YVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRP-NRVLNPVVQAKRYDTDGAYV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R W+PEL + +H P + +L+YP P++D + L ++ A+ Sbjct: 408 RRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLDLSEG----LARFKDAR 456 >gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1] Length = 468 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 159/477 (33%), Positives = 239/477 (50%), Gaps = 23/477 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M +VW R D R+ D+ AL A K++ F P ++ + + Sbjct: 4 MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDPYFAKERTY---HHEYFFQ 60 Query: 64 SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ Q ++ L GI D + + + +F+N+ RD+ Sbjct: 61 TVEQFRQMLRHLYGIHVHILH----GDIDDVFVRLISRTHMNAIFFNKDEVGRGKERDEY 116 Query: 123 LEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--- 178 + LQ I D L +L YKVYTP+ +A + + L Sbjct: 117 VRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDLL 176 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P++ + + Q EQ+ALH+L++F + YY QRDIPA Sbjct: 177 RAHMLQITPLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDIPA 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LSP+L G LS R ++ + ++F + +++ EL WR+ + H++ + Sbjct: 237 VSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNG---YDEAVETYIKELAWRD-FYHMIYAH 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + FI + W++D +AWK+G TGFP++DA MRQL GWMHNRLRMI A Sbjct: 293 FPFTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAA 352 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KD L+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFR+FNP Q K+F Sbjct: 353 SFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKF 412 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP GT+IR ++ EL + P+ YIH P K+++ +YP P VDH+ + + Sbjct: 413 DPDGTYIRTYVQELASFPSLYIHEPW----KSNIQTDYPAPTVDHQLQRQRAIALFR 465 >gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis] Length = 586 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKRNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica] gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica] Length = 693 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei] Length = 587 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLLVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + + + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM 18603] Length = 437 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 148/484 (30%), Positives = 221/484 (45%), Gaps = 50/484 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 MK +V + W R DLR+ DN LY A V+ +FI E Q + Sbjct: 1 MKQ----TVSIFWFRRDLRLDDNAGLYYALK-GGHPVLPLFIFDTEILNQLEDREDARVT 55 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 FIY ++ + L ++ + ++ + + + + ++ N YE R Sbjct: 56 FIYQTIEALNNELREQQSSSILIKYNSTGQA---WNEVLAEYDIAAVYTNHDYEPYARHR 112 Query: 120 DKLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSL 177 D L++ + I + G ++ + Y V+TP+++ L Sbjct: 113 DAELKELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLKPYP 172 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + +P +P F FP K K + Y EQRD P Sbjct: 173 TRKYLDNISKTSPFQLPTLKSMGFAESKTHFPD----------KQYKTIIAGYHEQRDFP 222 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 AI+GTS + +L G +S RQ + +WLNELIWREFY ++ Sbjct: 223 AIKGTSHIGLHLRFGTVSIRQL----------ATDAYGAEEKTWLNELIWREFYMMILYH 272 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P F P ++I W + +AW +G TG+P++DA MR+LN G+MHNR+RM+ Sbjct: 273 FPQTADH-AFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVV 331 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+ Sbjct: 332 ASFLSKHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKK 391 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+ +++ W+PE + YP PIVDH A L + A Sbjct: 392 FDPKLQYVKKWVPEYADFSK------------------YPEPIVDHAFARERCLKVFKEA 433 Query: 478 KKQS 481 +S Sbjct: 434 LSKS 437 >gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas neptunium ATCC 15444] Length = 536 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 103/490 (21%), Positives = 187/490 (38%), Gaps = 30/490 (6%) Query: 6 AMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +MS VH++W + DLR+ D+ A AA S A ++ ++I P W S RQ F+ S Sbjct: 6 SMSGVHVIWFKRDLRVHDHAA-LAAAVASGAPILPLYIFEPGYWALPEHSRRQFDFVRDS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ +L +G +I+ + + + + + + + Sbjct: 65 LEELDAALKARGTKLVIR----MGSAIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAV 120 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +R + ++ + + + ++ P Sbjct: 121 RRWARNAGISLREQPQNGVQRALQSRDGWANQW---------EAFMRRPRLVAPEALKPS 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGT 242 +P+ F G A+ LR F + + Y + P Sbjct: 172 AADSEEWPLPQDFGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAADAC 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFY 298 S+LSP+L+ G +S R+ W ++ + +G S+++ L W + + Sbjct: 232 SRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSFISRLQWHCHFIQKLEDQ 291 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 S+ + AW +G TGFP +DA MR L GW++ R+R + Sbjct: 292 TSIESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFRMRAMV 351 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 F L +DW+ E+ + D + + Q + + RI+NP Q + Sbjct: 352 MGFASHHLWLDWKQPAEHLAALFTDFEPGIHYP--QAQMQSATTGMNTPRIYNPVKQSQD 409 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 DP G FIR W+PEL+ +P +++HAP L YP+ IVDH A Sbjct: 410 QDPDGAFIRRWVPELSGLPAEWLHAPWEAPASVRARAGIVLGQTYPMRIVDHMAAAEEAR 469 Query: 472 NQYYAAKKQS 481 ++ +A +K++ Sbjct: 470 SRIFAVRKRA 479 >gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] Length = 466 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 141/476 (29%), Positives = 223/476 (46%), Gaps = 19/476 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L WLR+D R N L A + +V+ ++ + Q ++ SL Sbjct: 4 KIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLSN 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L++ IV + + ++F + D+ ++ + + LL Sbjct: 60 FKKKLNELNIVLEIVETNSFKI---FFDALIKKKDFXIYWNKVYEPDYLKFDEYLLNIFK 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAI 182 + + K F + L I +KV+TPF + + + Sbjct: 117 NNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKNKT 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 F+ + ++ EQ+A L+KF KE++ Y E R+ P+I+GT Sbjct: 177 NFFKNSISVEKILPEKDWFKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSIKGT 236 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP++ G L WN ++ + K E + H + + Sbjct: 237 SKLSPFIKFGQLHVETIWNECIKKKPKKIGTSKFLTEIGWRE------FNHSLINHFPHM 290 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + +K W K+S L WK+G TG+PI+DA MR+L + GWMHNR+RMI SFLV Sbjct: 291 LKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGSFLV 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DW+ GE+YF + LLD ASN GWQW A G D+ PYFRIFNP +QG++FD G Sbjct: 351 KHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFDKDG 410 Query: 423 TFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +++ W+PEL N+ ++IH P + +K L +YP PIV H++A LN + Sbjct: 411 EYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAFKKI 466 >gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341] Length = 477 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 236/478 (49%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R W L L ++ EL WR+ + +++ + Sbjct: 236 FLRTGELSIRTIWQELASASSSLSK------ETFKKELAWRD-FYNMIYSTFPQQKEEAI 288 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I+W D + W++G TG+PIIDAAMRQLN GWMHNRLRMITASFLVK+L + Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 ++PEL VP +YIH P+ + L NYP PIVD+ + TL Y A+K+ Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466 >gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 478 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 203/475 (42%), Positives = 298/475 (62%), Gaps = 5/475 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++ IY +++ Sbjct: 1 MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++K +++ GI+F Y++ +++ +S ++ +C +VT +F+N +YE E +RDK+++K+ Sbjct: 61 ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I + + + PGSI N +MYK ++ F+ I+ L P P + Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180 Query: 186 GPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P F Y + +FPIGE L+ F K Y ++I + TS Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +LSIGV+SPRQC L +E+ D I K W+NEL+WREFY+HL+ FYP++ Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPD--IIHKLEECKWINELLWREFYQHLLYFYPNIGQ 298 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W +I+W+ + + L WKQG TG+PIIDA MRQL +GW+ NRLRMITASFLVK Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR ++PEL+NV T IH P N + YP PI+++ + TL + AK Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYYHSKKKTLLVFKHAK 473 >gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales bacterium ALC-1] Length = 434 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 214/470 (45%), Gaps = 45/470 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN Y A + V+ +FI E + + FI+ +L Sbjct: 4 TVNIFWFRRDLRLDDNVGFYEALK-GNHPVLPIFIFDSEILSKLPKDDARITFIHETLQN 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++L ++ ++ E + ++ N YE RD ++ L Sbjct: 63 IRQTLQD---NYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVL 119 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLT 185 I K++ D V+ I+ YKVYTP+ ++ + D + A + Sbjct: 120 AEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAYFKNI 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 D F+ + + P E ++ I R+ PA TS+L Sbjct: 180 FQEINLPNLSLSDIGFETSNQLIPPYEVSSKLIQNYE---------ATRNFPAQNSTSRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E ++ + ELIWREF+ ++ +P Sbjct: 231 GPHLRFGTVSIRKMVKKAITETNEIFLH----------ELIWREFFMQILWHFPHTAKD- 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++IEW + +AW +G TG+P +DA MRQLN G+MHNR+RM+ SFL K L Sbjct: 280 AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L D D++SN G WQW A +G D+ PYFRIFNPT Q +FD +I Sbjct: 340 LIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLEYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + W+P+ + YP PIVDHK+A L Y Sbjct: 400 KKWVPDFQEL-------------------TYPQPIVDHKEARERCLKTYK 430 >gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2 155] Length = 452 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 151/477 (31%), Positives = 221/477 (46%), Gaps = 38/477 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR D+ A+ A DA V+A ++ P R+ ++Y +L Sbjct: 1 MPT-LLWFRRDLRCADHPAVLDAAQ-GDADVLACYVLDPRLTGSS--GDRRLAYLYGALR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L G + + + + + +RRD+ + Sbjct: 57 DLREQL---GGKLLV----TRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAA 109 Query: 127 LQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L L+ PG I Y+V+TPF +A + +A S P A Sbjct: 110 LADLPGDVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSAR- 168 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + PS +P + P D P GE A R F +E + Y R+ P + TS Sbjct: 169 ---WIDPSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++S +L G + PR L+ GA ++L EL +R+FY ++ +P Sbjct: 226 RMSAHLKFGTIHPRTMAADLER------DGAGDGAAAYLRELAFRDFYAAVLHHWPDSAW 279 Query: 304 GKPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 E E L AWK G TGFPI+DA MRQL G++HNR+RMI ASFL Sbjct: 280 WNWNRTFDAIETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFL 339 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL + W+ G +F+ QL+DGD+A+N GWQW A G D+ PYFR+FNPT QG++FDP Sbjct: 340 VKDLHLPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPD 399 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQY 474 G +IR W+PEL + P + D + + +YP PIVDH + L +Y Sbjct: 400 GVYIRRWVPELAD--------PATVPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448 >gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S] Length = 443 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 212/473 (44%), Gaps = 33/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVW R DLR+ D L AA + + +F+ + F+Y SL Sbjct: 1 MTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLS 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L + +V + D +E + ++ + Y RD Sbjct: 55 ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDA----A 103 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + RV + + PG + YKV+TP+ K + + +A + + Sbjct: 104 VAERVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + R A P GE AL FC + + Y +RD P + TS++S Sbjct: 164 DDVDVSKARNAIPAPDASGPA--AGEAAALERWSAFCDDDLIRYDAERDRPDLDTTSRMS 221 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR L + GA + ++ WR+FY ++ P Sbjct: 222 VYLKFGNIHPRTMLADLARKRS-------HGAEQYRRQVAWRDFYADILFQRPDSARRNY 274 Query: 307 FIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVKD Sbjct: 275 DAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLVSEGWMHNRVRMIVASFLVKD 334 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W G +FM L+DGDLASN GWQW A +G D+ PYFR+FNPT QG++FDP G + Sbjct: 335 LHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGDY 394 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +R W+PEL V + +H K+ YP PIVDH + L +Y A Sbjct: 395 VRRWVPELRGVRGKAVHT-----LKDARPEAYPDPIVDHAEERREALARYGAL 442 >gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis] gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis] Length = 640 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 223/492 (45%), Gaps = 28/492 (5%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS + +VW R DLRI DN AL AA D ++ VFI P++ Q ++ S Sbjct: 1 MSSNKTIVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQS 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + ++ L TK+ +NR Y+ + RD ++ Sbjct: 59 LAHLGHSLKSLGAELLLIKTHS---TLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIK 115 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++L I +S++ +L P I + + + + + + ++ P + Sbjct: 116 EKLVELGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVP 175 Query: 184 LTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V + + + G NA L +F ++ + Y ++R Sbjct: 176 AAETVNSCSVEELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEV 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSPYL G LS R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 GGNSTSLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L +P + F+ WN + +AW+QG TG+P++DA MR+L GW+HN++ Sbjct: 296 LCFNFP-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R+I +SF VK LL+ WR G +YF LLD D+ S+ GWQ+ + D R+ +P I Sbjct: 355 RVIVSSFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEI 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 QG +FD G ++R WLPEL +PT++IH P +L NYP PIV+ A Sbjct: 415 QGSKFDADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLAR 474 Query: 468 HH---TLNQYYA 476 + + + Sbjct: 475 ERLTEAIFRMWE 486 >gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428] Length = 468 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 158/477 (33%), Positives = 232/477 (48%), Gaps = 17/477 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS + W R DLRITDN AL AA D +V+ V+I + + A + F+ L Sbjct: 1 MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L KG Q + L Q +++NR + ++ L K Sbjct: 60 SLARNLEAKGGRLIIRQ----GRADAVLKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + D L +L +KV+TP+ KA ++ + + + + Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLK--LDKPEPTRAISKLSTP 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P + + GE A L F +++Y +RD+PA +GTS+L Sbjct: 174 PHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEEGTSRL 233 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L G LS R+ + + + ++NELIWREFY ++ +P V + Sbjct: 234 SQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQVLDHE 293 Query: 306 PFIPW-------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + E Q W +G TGFPI+DA MRQL G+MHNR+RMI A Sbjct: 294 FQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNRVRMIVA 353 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL KDL V W GE +FM L+DG++ASNNGGWQW+ASTG D+ PYFRI NP Q KRF Sbjct: 354 MFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPWSQSKRF 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 DP+G +I+ W+PEL +VP + AP + L+ +YPLP+VDH + L + Sbjct: 414 DPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHARERDVALEMFR 468 >gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina] Length = 681 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 224/488 (45%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 59 DSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 115 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 175 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P F+ + + + G NA L F + Y + R T Sbjct: 176 SKCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 236 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +F Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469 DP G ++R WLPEL+ +PT++IH P + + +L NYP P++ +A Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474 Query: 470 TLNQYYAA 477 L+Q + Sbjct: 475 ALSQMWQL 482 >gi|738308|prf||1924377A blue light photoreceptor Length = 681 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] Length = 455 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 199/469 (42%), Gaps = 20/469 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + + ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 GLDAGLRERGGRLVVR----AGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTA 115 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + L PG ++ + V+TP+ + ++ L P Sbjct: 116 LEGTGAELVEHEAVVTALQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLA---APRALT 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S+ + GE +L + ++ V Y E D A GTS+ Sbjct: 173 VPSGVRSDAVPRRADVEGVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R++ ++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHRVRAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHK 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 DYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G +F+ L DGDLA+N WQW A TG D+ P R+ NP Q +++DP+G + Sbjct: 346 LYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +R W+PEL + + +H P YP P+VD + Sbjct: 405 VRRWVPELRGIEGRAVHEPWKRPAGEREG--YPRPLVDLAEGRDRFRRA 451 >gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b] Length = 494 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 107/476 (22%), Positives = 175/476 (36%), Gaps = 24/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI D+ AL+ A V+ V+I PE WRQ S RQ F+ L +++ Sbjct: 2 ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G+ D++E LD L + + Sbjct: 60 DLARAGLSLVLR----VGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRV----AG 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 +P ++ + + + + + V A P Sbjct: 112 WARSQGVVWHEVPQCGVVRRLATRDRWQSGRDGFMRAPQLGVPVGLHGVEAPSDDLP--- 168 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPY 248 + G + L+ F ++ Y P Q S++SP+ Sbjct: 169 ---DAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRGQTYRRAMSSPLEGAQACSRISPH 225 Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L+ G LS R+ + S+ + L WR+ + + P++ Sbjct: 226 LAFGTLSVREAVQAGAARAAAVKGGRDGWSGSMRSFQSRLAWRDHFMQKLEDEPALEYRC 285 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + D+ LQAW +G TG P +DA MR L GW++ R+R + + L Sbjct: 286 LHPAYEGLRPQTPDATRLQAWSKGETGLPFVDACMRSLAATGWLNFRMRSMVMAVASYHL 345 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DW+ D + + Q +G + RI+NP QG DP G F Sbjct: 346 WLDWKATGPVLARLFTDYEPGIHWS--QVQMQSGTTGMNTIRIYNPVKQGHDQDPTGAFT 403 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 RHWLPEL +VP Y+ P +W L YP P+VD +A Q +A +++ Sbjct: 404 RHWLPELADVPDAYLQTPWAWGGAGRLLGRRYPEPLVDVARAAKTAREQVWAVRRR 459 >gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 486 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 128/492 (26%), Positives = 216/492 (43%), Gaps = 31/492 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHF 60 M+V L+W R DLR+ D++ L AC + +I ++ P Q+ + S + F Sbjct: 1 MTV-LLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL +++ L +G Q + + + + V ++ + + E Sbjct: 59 LLESLADLRQQLRSRGSDLVIRQ----GQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVA 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +E+ L+ I D L L L + ++ Sbjct: 115 AAVERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPS 174 Query: 181 AIRLTGPVTPSNIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 L + P +P P +A + +++ Y E Sbjct: 175 IPPLPSGLDPGPLPTLASLGLSSPARDPRARFTYTGGSTAAHARLQTYFWDLDRLRIYKE 234 Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +S+LS +L++G +SPR + +K + + + + EL+WR+++ Sbjct: 235 TRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERV--RNESTYWLVFELLWRDYF 292 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R ++A + + I I W +D QAW +G TG+P++DA MR+L G+M N Sbjct: 293 RFILAKHGAKLFRPSGIQGI-PIPWQQDWPRFQAWCRGETGYPLVDANMRELAATGFMSN 351 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ASFL K+L +DWR+G E+F S L+D D+ASN G W + A GND+ FR F+ Sbjct: 352 RGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHI 410 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465 Q + +DP+G ++RHWLPEL +P IH P+ L ++YP P+VD +K Sbjct: 411 PKQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQFGVRLGVDYPRPLVDLEK 470 Query: 466 ACHHTLNQYYAA 477 + Y AA Sbjct: 471 SLAANRRVYEAA 482 >gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio] Length = 659 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 191/496 (38%), Gaps = 31/496 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 3 PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + + + ++++L + E RD ++K Sbjct: 62 LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S I+ + + LI + ++ + + Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177 Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235 VTP + Y +++ ++P GE AL + + + K + +R Sbjct: 178 CVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237 Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + P +I W+K+ L W + TGFP IDA M QL GW+H+ Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G + F LLD D + N G W W + + +F + Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P G+R DP G FIR +LP L P +YI+ P + K + ++YP P+V+H Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474 Query: 465 KACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 475 EASRLNIERMKQIYQQ 490 >gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 467 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 230/471 (48%), Gaps = 14/471 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L AA +V+ VF+ P + ++ + F+ SL ++Q+ Sbjct: 5 LFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLRELQQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + +E L Q + +NR E +RD+ L L+ Sbjct: 64 RWRQAGSQLLLLE----GNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAI 119 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + D L +PP + Y+VY P+ ++ + + + L ++ Sbjct: 120 GVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKPVPAPSELKALLKPDLS 179 Query: 190 --PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P + A GE AL L F + +Y E R++P +GTS LS Sbjct: 180 GLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGRNLPGDEGTSTLSA 239 Query: 248 YLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L G LSPR W + + + + W EL WREFY+ + +P + G P Sbjct: 240 ALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFHFPELADG-P 298 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + P + W D L+AW+ G TG PI+DAAMRQL G+MHNR RMI ASFLVKDL+ Sbjct: 299 YRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIVASFLVKDLI 358 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR GE +FM+ +DGDLA+NNGGWQW+AS+G D P RIFNP Q +FDP+ T+IR Sbjct: 359 CDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASKFDPEATYIR 417 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 WLPEL ++ T+ + S YP PIV+HK+ Y A Sbjct: 418 RWLPELAHINTKDL---ISGDIGALERRGYPEPIVNHKQQQARFKALYAAL 465 >gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 484 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 125/487 (25%), Positives = 212/487 (43%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D+ L+ A S+A VI + P Q+ Q ++ F+ S+ Sbjct: 4 LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL K Q L +V +++NR+ E+ + L Sbjct: 63 ADLRQSLRGKQSDLILRQ----GHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRS 118 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I S L L ++ + ++ + ++ Sbjct: 119 ALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTPQSLSTL 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRD-I 236 + P +P+ D+ + +P A + ++++ Y E R+ + Sbjct: 179 PDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKETRNGM 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++ SP+L++G +SPR ++K D + + + ELIWR+++R + A Sbjct: 239 LQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRVKNN--STYWLIFELIWRDYFRFICA 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + W + + W+ G TGFP+IDA MR+L G+M NR R Sbjct: 297 KHGKRVFRVSGL-QGLALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFMSNRGRQN 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W++G E+F S L+D D+ SN G W +AA GND+ FR FN Q K Sbjct: 356 VASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG-FRFFNIVKQAK 414 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DPQG ++RHWLPEL +VP + P + +YP P+VD ++ Sbjct: 415 DYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPEPMVDLWQSAKVN 474 Query: 471 LNQYYAA 477 Y Sbjct: 475 EQIYNRV 481 >gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio] gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio] Length = 658 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 191/496 (38%), Gaps = 31/496 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 3 PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + + + ++++L + E RD ++K Sbjct: 62 LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S I+ + + LI + ++ + + Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177 Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235 VTP + Y +++ ++P GE AL + + + K + +R Sbjct: 178 CVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237 Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + P +I W+K+ L W + TGFP IDA M QL GW+H+ Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G + F LLD D + N G W W + + +F + Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P G+R DP G FIR +LP L P +YI+ P + K + ++YP P+V+H Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474 Query: 465 KACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 475 EASRLNIERMKQIYQQ 490 >gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 119/501 (23%), Positives = 196/501 (39%), Gaps = 37/501 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + W R LR+ DN AL AA + A++ +FI P R +S + F Sbjct: 1 MKHN-----SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + ++L + + E + +VT+L + E +RD Sbjct: 55 LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +EK + S I+ + + ++ +L Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVP 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224 + T Y ++ + +P GE +++ Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + E T+ LSPY+ G LS R W R+ E + S + Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGKK--HSDPPVSLHGQ 288 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P+ + +++W + LQAW +G TG+P IDA M QL Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 +FR+++P GK+ D G +I+ +LP L P +YI+ P + +YP Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIV+H A + + AA Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487 >gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio] gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio] Length = 655 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 190/496 (38%), Gaps = 31/496 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R LR+ DN AL A +D V V+ P + + F+ L Sbjct: 3 PNSIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L + + + ++++L + E RD ++K Sbjct: 62 LDSNLRKLNSRLFVVR----GQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + S I+ + + LI + ++ + + Sbjct: 118 MEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGC 177 Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235 VTP Y +++ ++P GE AL + + + K + +R Sbjct: 178 CVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERP 237 Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPL-SLYGQLLWREFF 296 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + P +I W+K+ L W + TGFP IDA M QL GW+H+ Sbjct: 297 YTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHH 355 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL + W G + F LLD D + N G W W + + +F + Sbjct: 356 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYC 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P G+R DP G FIR +LP L P +YI+ P + K + ++YP P+V+H Sbjct: 415 PVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHA 474 Query: 465 KACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 475 EASRLNIERMKQIYQQ 490 >gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum SV96] Length = 453 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 216/472 (45%), Gaps = 28/472 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66 S L R DLR+ DN AL A S +VI FI P Q H S F+ S+ Sbjct: 5 STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ L G + + + QQ++ +F NR Y RRD L Sbjct: 64 DLQQQLQSAGGKLALYHAL----PEQVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + I + DS+L P + YKV+T F Q V + + Sbjct: 120 CKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPVALP------EVLVKS 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ +P G + AL IL + Y + RD PA+ TS+L Sbjct: 174 NFLAAASEFTIDQLDLSVTEPAIKGGRKQALAILDRLGDYVDY--LNTRDFPALDATSKL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G S R+ + + E+ + +L WR+F+ H+ +P V G+ Sbjct: 232 SAHLKFGTCSVREVFYAITEQLG--------SEHPLIRQLYWRDFFTHIAYHFPQV-FGR 282 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F+ + W+ + QAW G TGFPI+DA MR+LN G+MHNR+RMITASFLVKDL Sbjct: 283 AFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITASFLVKDL 342 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YF L+D D NNG WQW ASTG D+ PYFRI NP +Q +FD +I Sbjct: 343 HIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKFDQDCRYI 402 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 WLPEL P + IH YP PI+DH + + ++ A Sbjct: 403 YRWLPELQAFPPKTIHQWDKKHSACS----YPAPIIDHARESQLSKARFKEA 450 >gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328] Length = 474 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 157/476 (32%), Positives = 235/476 (49%), Gaps = 16/476 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA ++V+ VF P I+ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q D+ + L + +++N+ E +RD+ +E+ L Sbjct: 65 DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +L + + + YKVYTP+ + IQ +L + Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180 Query: 190 PSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + ++ GE A L+ FC +Y Y + R+ PAI GTS Sbjct: 181 AREAGAIALPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTS 240 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP L G + R W + +E + + +W E+ WREFY+ + +P++ Sbjct: 241 LLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFPALA 300 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G F ++ W+ + QAW QG TG+PI+DAAMRQLN GWMHNR RMI ASFL Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D P RIFNP Q +++DP+ Sbjct: 360 KDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEA 418 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR WLPEL N+ T ++ + + YP PIVDH + + Y K Sbjct: 419 EYIRQWLPELRNLETAHLVT-GKISSSDRQACGYPQPIVDHNQQQKLFKSIYSQLK 473 >gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099] Length = 477 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 235/480 (48%), Gaps = 25/480 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +V R DLR+ DN A AA V+A++I + A +++ SL + Sbjct: 10 IVLFRRDLRMGDNAA-LAAAAERGVPVVALYILDETTKGLRAMGAASRWWLHHSLAALGD 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G D + +D+ +F+NR+Y+ +EV D L+ L+ + Sbjct: 69 LLRKAGANLFLAHGRTEDAVAKAIDA----SGANCVFWNRRYDPSEVAVDARLKAALREK 124 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188 SFD ++L P + + YKV+TPF KA+ + D P G + Sbjct: 125 GLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQIDGWRGELG 184 Query: 189 ----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ + + GE+ A L +F + + Y QRD P TS+ Sbjct: 185 GLRLDELDLLPSKPDWAYGLRETWTPGEKGAQARLGQFIEHGLANYERQRDYPGQPSTSR 244 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G ++P Q + L+ G + E+ WREF HL+ P G Sbjct: 245 LSPHLTFGEITPFQIFAALRRSKSS-------GTSKFRAEIGWREFSYHLLFHNPD-LSG 296 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P + + W D L+ W++G TG+PI+DA MR+L GWMHNR+RMI ASFL+KD Sbjct: 297 RNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASFLIKD 356 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L++DWR GE++F L+D D A+N WQW A +G D PYFRIFNP +QG++FDP G + Sbjct: 357 LMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHGDY 416 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R +PE++ +P +YIH P L YP PIVDH A L Y + K Sbjct: 417 VRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERALIVYQSLK 476 >gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 508 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 104/479 (21%), Positives = 175/479 (36%), Gaps = 30/479 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW + DLR+ D++ L A V+ + + PE WRQ SARQ F SL Sbjct: 3 PVQVVWFKRDLRVADHQPLLQASFL--GPVLPLMVVEPELWRQSDASARQWDFCAESLED 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++L+ G E L+ + + L+ +++ Sbjct: 61 LRRALAGLGQPLVVR----IGTVEEVLERARCRFGIAGLWSHQETGNGWTYARDRRV--- 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R + +P ++ + + + +V P+ + Sbjct: 114 -ARWAKSHSIPWIEIPSFGVIRRLGSRNGWARRWEARMAEPMVPPPEALQPLAGLDPGAI 172 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + S + D G+ L R A + S+LSP Sbjct: 173 PSASELGLAPDPCPGRQVGGRQQGQAVLESFLNGRGARYHRELSSPR--TAFESCSRLSP 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L+ G LS R+ + + + L W + + P + + Sbjct: 231 HLAWGTLSMREVVQLSRRRGAAPVG--------FEARLHWHCHFIQKLESQPDLEFRELH 282 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 D L AW +G TG P +DA MR L GW++ R+R + S L + Sbjct: 283 PLTAGLRSS--DPERLAAWAEGRTGLPFVDACMRALIATGWINFRMRAMLMSVASYHLWL 340 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR + +D + + Q +G + RI+NP QG+ DP G FIR Sbjct: 341 PWRESGLHLARLFVDYEPGIHWS--QCQMQSGTTGINTIRIYNPIKQGQDHDPGGDFIRQ 398 Query: 428 WLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL VP ++H P + L L+YPLPIV+ +A + +A +++ Sbjct: 399 WLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPLPIVEPNQAAREARVRIWAQRQE 457 >gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus] Length = 543 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 488 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 186/499 (37%), Positives = 259/499 (51%), Gaps = 42/499 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS--------------DAKVIAVFIATPEQWRQHGIS 54 LVW RNDLR ++ V A FI T EQW H S Sbjct: 2 TQLVWFRNDLR----------AADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWS 51 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 A + H + + + L++ GI + + ++F+ S+ L+++C +++++ +N +Y + Sbjct: 52 AAKVHLMLDHADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGV 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 NE RRDK L+ R + S +P G +L + Y V+TPF + + Sbjct: 112 NERRRDKALKPRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQ 171 Query: 174 LRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRKFCKE 225 L VP L G ++ A+ P GE A L+ F +E Sbjct: 172 PALLAVPKKVGEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQE 231 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD------LLIKPKSGAF 279 + Y RD PAI+GTS+LSPYL+IG LS RQC + + G F Sbjct: 232 RAGDYKNDRDFPAIEGTSKLSPYLAIGALSGRQCVQAAWQLKQSMGSSFGKAANDEEGFF 291 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +W EL WR+FY H++ P V M + F P TE ++WN +AWK G TG P++DAA Sbjct: 292 TWETELAWRDFYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAA 351 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLN WMHNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG Sbjct: 352 MRQLNETSWMHNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTG 411 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+ PYFR+FNP QG+RFD G FIRHW+PEL + ++ IH P + YP P Sbjct: 412 TDASPYFRVFNPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRP 468 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVD K++ + ++ A + Sbjct: 469 IVDLKESRKEAIARFQALR 487 >gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus] Length = 555 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + L+ + ++ + + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca] gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca] Length = 587 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC 19194] Length = 476 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 184/475 (38%), Positives = 266/475 (56%), Gaps = 12/475 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLRI D+ AL+ A + +A+ I +PEQW+ H + + F L Q+Q Sbjct: 6 QLIWFRQDLRIHDHAALWHATQT--GRTVALVILSPEQWQLHDDAPIKIDFYLRQLQQLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L I + D + + +++ N + +NE++RD ++K L Sbjct: 64 IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + F D L P SI N + Q Y+V++ F+K Q L Q+ + PVP ++ + Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQPINI 183 Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 P F + +P+ E AL +L +F +++ Y RD PA G Sbjct: 184 DPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQAG 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQ+S YL+IG+LS RQC L + + G +WL+EL+WREFY+H++ YP V Sbjct: 244 TSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESEGQQTWLDELLWREFYQHILFDYPRV 303 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PF T+KI W D LQ W+QG+TG PI+DA MRQL GWMHNR+RMI A FL Sbjct: 304 SKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAMFL 363 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP Q ++FDP Sbjct: 364 SKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFDPN 423 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G ++R W+PEL ++ + IH P+++ + L NYP+PIVD K + + + Sbjct: 424 GDYLRQWIPELAHLDAKSIHEPYAYKMNSSL--NYPIPIVDLKSSRARAIAAFKE 476 >gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis] Length = 618 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP Y +++ ++P GE AL L + + K + + Sbjct: 176 EKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R T+ LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106] Length = 515 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 134/494 (27%), Positives = 228/494 (46%), Gaps = 31/494 (6%) Query: 6 AMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQS 58 MS L+W RNDLR+ D++ L+ A + A++I V+ P Q+ + ++ Sbjct: 22 KMSDKRVLIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRA 80 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ SL + G +D + Q + +++Y R+ E+ Sbjct: 81 QFLLESVTDLRNSLRKLGSDLIVR----YDFPETVIPELVKQLGIDEVYYYREVTSEELA 136 Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QA 172 + LEK L + KS+ + L + ++ +V+T FRK + +N Sbjct: 137 VETTLEKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPT 196 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YY 230 R +P I + T + Q F GE + L + E+ Y Sbjct: 197 PQRLPILPQIEVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRLTDYIWEQDCLKDY 256 Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + R+ + +S+ SP+L++G LSPR ++ +++ + + + EL+WR+ Sbjct: 257 KQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHVQDYEEQRVKND--STYWLVFELLWRD 314 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 ++R + + + + I W +D + W+ G TGFP++DA MR+L G+M Sbjct: 315 YFRFICLKHGNKIFRLSGL-QGVSIPWKEDWERFECWRTGTTGFPLVDANMRELAATGFM 373 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND+ FR F Sbjct: 374 SNRGRQNVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYF 432 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 N Q K +D G +++HWLPEL +P +H P L ++YP P+VD Sbjct: 433 NIPKQAKDYDSNGDYVKHWLPELAALPASKVHEPWMLQPVEQKRFGVKLGVDYPNPVVDL 492 Query: 464 KKACHHTLNQYYAA 477 K+ Y AA Sbjct: 493 MKSVQSNKKSYEAA 506 >gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus] Length = 742 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 124/491 (25%), Positives = 194/491 (39%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ VFI P + + F+ L + K Sbjct: 32 VHWFRKGLRLHDNPALREGLVDA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 90 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + + L + T L + E RD + + + Sbjct: 91 NLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCREV 146 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + S I+ + +ALI ++ + L VT Sbjct: 147 GIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISLETLNRAVT 206 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + + ++ P++ GE AL L + + K + R Sbjct: 207 PISDNHDERFGVPTLEELGFDTEGLKPPIWIGGENEALLRLERHLERKAWVASFGRPKMT 266 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + + LSPYL G LS R + +L E + IK + S +++WREF+ Sbjct: 267 PESLLSSQTGLSPYLRFGCLSTRLFYYQLSELY--KRIKQERPPLSLHGQILWREFFYCA 324 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L+ W G TGFP IDA M QL GW+H+ R Sbjct: 325 ATRNPNFDRME-GNPICVQIPWEKNQEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLAR 383 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 384 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 442 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YP+PIVDH KA Sbjct: 443 FGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQKSIRCIIGKDYPMPIVDHTKAS 502 Query: 468 HHTLNQYYAAK 478 L + Sbjct: 503 EINLERIKQVY 513 >gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis] Length = 531 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 118/501 (23%), Positives = 195/501 (38%), Gaps = 37/501 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + W R LR+ DN AL AA + A++ +FI P R +S + F Sbjct: 1 MKHN-----SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + ++L + + E + +VT+L + E +RD Sbjct: 55 LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +EK + S I+ + + ++ L Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVP 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224 + T Y ++ + +P GE +++ Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + E T+ LSPY+ G LS R W R+ + + S + Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGKK--HSDPPVSLHGQ 288 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P+ + +++W + LQAW +G TG+P IDA M QL Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 +FR+++P GK+ D G +I+ +LP L P +YI+ P + +YP Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIV+H A + + AA Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487 >gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum] gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum] Length = 583 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 221/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL AA VIAVFI PE+ + +I Sbjct: 1 MSSGGCSIVWFRRDLRLEDNPALAAAVRA--GSVIAVFIWAPEEEGYYCPGRVSRWWIKK 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL + G + + DS+ L T++F+N Y+ + RD Sbjct: 59 SLAHLDSSLKKLGTSLITKRSN---DSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + ++ L P +++ + + ++ F + + + LP I Sbjct: 116 KETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + R Sbjct: 176 ISGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP L G +S R+ ++R++ + + + +L + REF R+ Sbjct: 236 DSATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + ++P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 MSFYHP-YSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + W G +YF LLD DL S+ GWQ+ T D + I NP Sbjct: 355 RVVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G +FDP G ++R WLPEL +PT++IH P + +L NYP PIV+ A Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAK 474 Query: 468 HH---TLNQYYAA 477 L+Q + Sbjct: 475 ERLEEALSQMWQL 487 >gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex] Length = 524 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 124/503 (24%), Positives = 190/503 (37%), Gaps = 35/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQ 57 M V + W R LR+ DN AL A S ++ VFI P + + + Sbjct: 1 MNNK---PVVIHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNR 57 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL + +L + G + E + V KL + E Sbjct: 58 WRFLVQSLQDLDDNLKKIGSRLFILK----GSPTETFKKVFKEWNVKKLTFEVDIEPYAK 113 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA--------LIQNL 169 RD+ ++K H + S + + A T + + L Sbjct: 114 TRDEEIKKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKAL 173 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKE 225 + L+ + ++ GE + + Sbjct: 174 NAPGKLPKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYRGGETEALARMEKYMSQQDWV 233 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + + T+ LSPYL G LSPR ++RL E S S ++ Sbjct: 234 CKFSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDGRK--HTSPPTSLTGQM 291 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +WREFY A+ P+ P ++I W + + AWK G TG+P IDA M QL Sbjct: 292 LWREFYYTCGAYTPNFNRM-VGNPVCKQIPWKVDPEDEHFVAWKNGRTGYPFIDAIMIQL 350 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 T GW+H+ R A FL + DL V W +G++ F LLD D A N G W W +++ Sbjct: 351 RTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAGNWMWLSASAFFH 410 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 YFR+++P GK+ D G +I+ +LP L PT+YI+ P + +Y Sbjct: 411 S-YFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPLSVQQTAGCIIGKDY 469 Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479 P IVDH L + A + Sbjct: 470 PKRIVDHDVVMKENLAKMKKAYQ 492 >gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Dokdonia donghaensis MED134] Length = 494 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 179/491 (36%), Gaps = 25/491 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + + W + DLR+ DN+ L+ A +S+ VI ++I P S R +F Sbjct: 1 MSKSKS-HITVHWFKRDLRLQDNENLWQALQHSE-PVILLYIFEPSLLDDEHYSERHFNF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I SL +Q L Q + I + +++ + + I + Sbjct: 59 IKESLQDLQSRLENYDTKILVVQ----GEVIPVFKKLQQHYTIKRVYSHVETGIRKTYDR 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + K Q + S+ N + Q Sbjct: 115 DIAFKVYQQSQDIRWIQFINNGVRRSLSNRVGWVQGWE------WWMTEPQRIFVPQSGD 168 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 + G L F ++++ Y P A Sbjct: 169 LVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSFLRDRIKNYNAHISKPLLA 228 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + S+LSPY++ G LS R+ W R K+ K + + L W + Sbjct: 229 RKSCSRLSPYIAWGNLSVREVWQRAKKLRQA--SPYKRQIDGFTSRLRWSAHFIQKFEME 286 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 ++ + + + +AW++G TG+P++DA MR L G+++ R+R +T Sbjct: 287 DTMEFVSVNRGFHSLKKVSNPV-YAKAWQEGKTGYPLVDACMRCLVETGYLNFRMRALTL 345 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF +L W+ + Q LD + + Q A G + RI+NP Sbjct: 346 SFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQA--GETGINMLRIYNPVKNSYEH 403 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP+G FI+ W+PEL VP YIH P + + +YP PIV+ K+ + + Sbjct: 404 DPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNTTIGKDYPAPIVNIKETQKYATD 463 Query: 473 QYYAAKKQSLL 483 + K++ + Sbjct: 464 TMWKYKERPAV 474 >gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193] Length = 502 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 97/477 (20%), Positives = 178/477 (37%), Gaps = 20/477 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR +D+ AL A V+ +++ P+ W+Q S RQ F+ +L ++ Sbjct: 1 MQVVWFKRDLRCSDHAALTRAAQ--VGPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L +G Q +E L+ Q R++ L+ + + + Sbjct: 59 RDDLKLRGQPLVVRQ----GSVVEILEGLMRQGRLSALWSHEESGNGWTFQRDCRVAAWC 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + + + A + +P Sbjct: 115 RDNGIPWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPVDIVPGSIPTARDLG 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S++ + G + + Y + S+LSPY Sbjct: 175 LGSDVSPGRQSGGR--------GAGLERLESFLNQRGEHYQRAMSSPLEGTSACSRLSPY 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L+ G +S R+ LL + S+ L W + + P + Sbjct: 227 LAWGAVSMREVAQANAARQRALLPAEKSWRKSLRSFSGRLHWHCHFIQKIEDEPRIEFEN 286 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + D+ LQAW++G TG+P +DA MR L + GW++ R+R + + L Sbjct: 287 LHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGWLNFRMRAMLMAVAAYHL 346 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR ++ D + + Q +G + RI+NP QG DP G FI Sbjct: 347 WLDWRAPGQHLARMFTDYEPGIHWS--QVQMQSGTTGINTVRIYNPVKQGFDQDPTGIFI 404 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R WLPEL +P +++H P + + + + +YP I DH A + + +++ Sbjct: 405 RIWLPELAQIPDRHLHEPWAADNSAEVIGRHYPERIFDHMAAAKAAREKIWEVRRRP 461 >gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG 3301] Length = 461 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 153/458 (33%), Positives = 236/458 (51%), Gaps = 15/458 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVWLRNDLR+ DN AL+AA A + A+F+ + A ++ SL + Sbjct: 5 ALVWLRNDLRLADNPALHAAFKLGGA-ITALFVHE-SNPQLRDPGAAVRWWLEQSLDLLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +SL+++ I +++ ++ + +F+NR+Y E D +++ L+ Sbjct: 63 RSLNERNIELIV----ADGEALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +SF ++L+ P I + Y+V+TP+ K+L Q+ V L T Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPLPDRSVETTTVKH 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 TP + + ++ IGE A+ L F + Y RD P + GTS+LS + Sbjct: 179 TPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKLSAH 238 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +SPRQ W+ +D G +L+ELIWR+F+ H + + P + Sbjct: 239 LRFGEISPRQVWH-ATVSLMDQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDIAEIDM-R 296 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W +S + +W++G TG PIIDA MRQL GWMHNR+RM+ AS L K++ +D Sbjct: 297 DTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCKNMQID 356 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE++F L+D D+ASN G WQW A G D+ PYFR+FNP +QG++FD +G ++R W Sbjct: 357 WREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGVYVRKW 416 Query: 429 LPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 +PE+ +P +IH P + L YPLPI Sbjct: 417 VPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPI 454 >gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma proteobacterium HTCC2080] Length = 490 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 114/481 (23%), Positives = 178/481 (37%), Gaps = 19/481 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ +VW + DLR+ D+ L AA ++ V+I PE + R HFI SL Sbjct: 1 MSLSVVWFKRDLRLADHAPLSAAVALGQ-PMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G + D I + QR+ LF + + Sbjct: 60 DLNHQLQPHGTKVWVLE----GDPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++ L+ + + + Sbjct: 116 WAKSQGVCWQEFPTNGVQRGRKHRKGWNHRWG-----KLMAAPAETIIPAQLNALRSDLP 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244 + + P GEQ A L F + Y P Q S+ Sbjct: 171 EDLKGALCQRLGGWLPQHPNFQPGGEQQAHQTLEDFLTHRAGGYQRHISKPEGSRQHCSR 230 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G LS RQ LKE AF + L W + ++ Sbjct: 231 LSPHLAWGNLSIRQVQQALKERQSKGGWARPLSAFE--SRLHWHCHFIQKFESECTMEF- 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +++SHL+ AW +G TGFP +DA MR L G++H R R + SFL Sbjct: 288 ESINRGFLNYPRDQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRARAMLVSFLTHH 347 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWR+G + S LD + + Q G + RI+NP Q DP +F Sbjct: 348 LWQDWRLGVTWLGSLFLDFEPGIHYP--QMQMQAGVTGINTIRIYNPVKQSLEHDPTASF 405 Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 IR W+PE+ ++PT +H P S L+ ++YP PIV+ + + + K + Sbjct: 406 IRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRARDVLWELKSDPM 465 Query: 483 L 483 + Sbjct: 466 I 466 >gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767] gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii] Length = 555 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 161/483 (33%), Positives = 232/483 (48%), Gaps = 20/483 (4%) Query: 16 NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D R DNK L A + +I I E++ H +S + ++ SL ++K L Sbjct: 72 RDFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGSLDVLKKDL 131 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + I Q D + + Q + +F N +YE++E+R L L + I Sbjct: 132 REMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLVCFLLDKHI 191 Query: 133 CKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + P Y V+TP+ KA L D + P + Sbjct: 192 SFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRPHANESFSD 251 Query: 191 SNIPRFFDYPF------------QAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDIP 237 N + P + D + GE A +K Y E R+ Sbjct: 252 PNKLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKFKKYDESRNEI 311 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + + S++S +S G++S R + E I W+ ++ WR+FYRH++ Sbjct: 312 SEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGTGWIRQIAWRDFYRHILCN 371 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P VCM KPF+ + + W +S W QG TGFPI+DAAMRQLN G++HNR RMI Sbjct: 372 WPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQTGYLHNRCRMIV 431 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DW+ GE YFM L+DGD ASNNGGW +++STG D PYFRIFNP +Q +R Sbjct: 432 ASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYFRIFNPWLQSER 491 Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475 FD +GT+IR W+PEL ++ + IH P+ + N YP PIVDHK LN++ Sbjct: 492 FDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKNGYPKPIVDHKYCRERALNRFK 551 Query: 476 AAK 478 AK Sbjct: 552 DAK 554 >gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum IMS101] Length = 498 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 122/492 (24%), Positives = 217/492 (44%), Gaps = 29/492 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 ++W RNDLRI D++ LY A +A++I ++ P Q+ Q ++ F+ S+ Sbjct: 7 ILWYRNDLRIHDHEPLYKALK-VNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESI 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G Q D + Q +F++++ EV+ ++L+ + Sbjct: 66 ADLRNNLQKLGSNLVIFQ----DKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQ 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + L L ++ + ++ + + Sbjct: 122 ALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPKKLSSL 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRD-I 236 + +P D + + ++ + Y E R+ + Sbjct: 182 PKIDVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYLKVYKETRNGM 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L++G LSPR + +KE + + + ELIWR+++R + Sbjct: 242 LGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRVKNQ--STYWLIFELIWRDYFRFICQ 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + K + I W +D + W+ G TGFP++DA MR+L G+M NR R Sbjct: 300 KHGNKIFHKSGLQGI-AIPWQEDWEKFRKWQAGQTGFPLVDANMRELLATGFMSNRGRQN 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Q K Sbjct: 359 VASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIPKQAK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G +++HWLPEL VP +H P L + ++YP PI+D ++ Sbjct: 418 DYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPIIDLWQSVKEN 477 Query: 471 LNQYYAAKKQSL 482 +Y A + +L Sbjct: 478 EKKYNRALQMTL 489 >gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis MED134] Length = 436 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 210/472 (44%), Gaps = 44/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V + W R DLR+ DN A D V+ +FI E + + FIY L + Sbjct: 5 KVTIFWFRRDLRLDDNVGFLEALK-GDYPVLPIFIFDKEILDKLPEDDARVTFIYNELQK 63 Query: 68 VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L ++ + + V + NR YE + RDK + Sbjct: 64 MRDTLQAEHDSSLAMFYST----PEQIFKELIADYDVQAVITNRDYEPYALERDKKIASL 119 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ I +F D V+ I+ Y VYTPF+ + + + L Sbjct: 120 LEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYTSQYLD 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + S +P + + Y + R+ PA GTS+L Sbjct: 180 NLIDHSRLPNVTLVDMGFKKSSIEV-------PDYDVTPTLIENYEDTRNFPAQDGTSRL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + + ++ + +ELIWREF+ ++ +P K Sbjct: 233 GPHLRFGTVSVRKMVKKAIAQTNEV----------FWSELIWREFFMQILYHFPH-TKDK 281 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++I+W + + WK G TG+ ++DA MR+LN G+MHNR+RM+TASFL K L Sbjct: 282 AFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTASFLCKHL 341 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD D++SN G WQWAA +G D+ PYFRIFNP Q +FD Q +I Sbjct: 342 LIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYI 401 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL + YP +VDHK+A L Y A Sbjct: 402 NKWVPELQELS-------------------YPDKMVDHKEARERCLKTYKEA 434 >gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC30] gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus casseliflavus EC10] Length = 469 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 245/480 (51%), Gaps = 28/480 (5%) Query: 12 VWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +W R DLR+ DN AL A ++ +++ VF +Q+ S + ++++ Sbjct: 2 MWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPS---HDYFFSAVAHFI 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ ++ + + E D ++L++N +RD + + ++ Sbjct: 59 EAAKKQNLTIHLLTGT----LTEAFDQLFACYPEWSQLYFNFDNRGYGRKRDLYITELVE 114 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I SF+D L P + YK +TP+ K IQ + Sbjct: 115 QKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHALDFEKAAHFN 174 Query: 188 VTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P + + D +GE A L+ F ++++ Y + RDIP+I+GTS Sbjct: 175 DAPHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIKGTS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+LS G +S R+ W +E +G ++L EL WR+ + H++ F Sbjct: 235 RLSPFLSFGQISIRKVWAACQEMPSS------TGKATFLKELAWRD-FYHMIYFTHPEQK 287 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 I ++W KD L W+ G TG+PIIDAAMRQLN GWMHNRLRMI ASFL K Sbjct: 288 NYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK 347 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DWR GE YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGK+FD GT Sbjct: 348 DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFDKDGT 407 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ ++PEL +P +++H P+ ++ L +YPLPIVDH +A L+ Y Sbjct: 408 FIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIVDHNEARKRALDLYSKI 467 >gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris] Length = 681 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 139/492 (28%), Positives = 222/492 (45%), Gaps = 28/492 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VIAVFI PE+ + ++ Sbjct: 1 MSGSGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + DSI L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 KEVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 S+ F+ + + + G NA L F + Y + R Sbjct: 176 IPGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 MSFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 G + DP G ++R WLPEL+ +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 VGYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAK 474 Query: 468 ---HHTLNQYYA 476 L+Q + Sbjct: 475 VRLEQALSQMWQ 486 >gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 632 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 255/488 (52%), Gaps = 22/488 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLRI DN L A + + VI V++ +P+ W H +S + F S+ Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVEL 197 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKR 126 ++K L + I + + L + V +F N +YE +E R ++L+ Sbjct: 198 LKKELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ + + D ++PPGS+ + A + Y VY+P+ +A I +L + P Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNP 317 Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + F + ++P GE A+ L +F EK+ Y + Sbjct: 318 ANFRNKFSKLFDASVPSIPESKSLTPEEKERFSRLWPAGEAAAIDRLERFLVEKIVKYKD 377 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291 R+ PA+ T ++S + + G L+ R ++ L K G +W+ E+ WR+FY Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 RH++ +P VCM KPF I+W ++ AW +G TG+PI+DAAMR LN G+MHN Sbjct: 438 RHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNHTGYMHN 497 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D PYFRIFNP Sbjct: 498 RLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468 IQ ++FD G FIR W+ EL +V + +H P+ + + YP PIV+H A Sbjct: 558 WIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVEHTVARA 617 Query: 469 HTLNQYYA 476 L +Y Sbjct: 618 RCLKRYKE 625 >gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina] Length = 600 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 131/495 (26%), Positives = 204/495 (41%), Gaps = 31/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQ 67 ++W R LR+ DN AL AC A V +FI P ++ + + F+ SL Sbjct: 51 SILWFRKGLRLHDNPALRDAC-TGSAAVFPIFIIDPYFLQKSNNKVGVNRYQFLLESLSD 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL+ G + + E + + KL Y E RD ++ Sbjct: 110 LNSSLTSLGSQLLVLRGT----PEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMA 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + + S L +L + T + + V L +LP P RL Sbjct: 166 REAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVGHPLTALPAPTARLPPV 225 Query: 187 -------PVTPSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFCKEKVYYYVEQ 233 +P + + F+ G ++ ++ Sbjct: 226 DVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDTKWXASFEKPSTD 285 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 T+ LSPYL G LS R RL + + L K S +L+WREF+ Sbjct: 286 PSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYR-LHPKHSQPPMSLRGQLLWREFFYT 344 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L + P+ P +I W+ + LL+AW+ G TG+P IDAAM QL GWMH+ Sbjct: 345 LGSHTPNFDRI-AGNPICRQITWDTNPALLKAWRDGATGYPWIDAAMTQLREWGWMHHLA 403 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G+E F LLD D N W W +++ + YFR+++P Sbjct: 404 RHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAFFAQ-YFRVYSPV 462 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 + GK++D +G +IR +LP L ++P +YI+ P + + +YP PIVDH A Sbjct: 463 VFGKKYDKEGAYIRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGRDYPAPIVDHAVA 522 Query: 467 CHHTLNQYYAAKKQS 481 + + AA K + Sbjct: 523 SKECIARMGAAYKAT 537 >gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio bacteriovorus HD100] Length = 435 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 218/481 (45%), Gaps = 53/481 (11%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64 MS V L W R DLR+ DN LY A + V+ +FI E + + FIY Sbjct: 1 MSKVTLFWFRRDLRLDDNAGLYHALKE-RSAVLPLFIFDSEILENLDDPADARVTFIYEQ 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + +++ L+ K +E L + + V ++ N YE +RD+ + Sbjct: 60 IQDMKQQLNAKKSDLIVRH----GKPLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVA 115 Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 I IL A + Y VYTP+R ++ NL + L+S P Sbjct: 116 AWAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYE 175 Query: 184 LTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P F+ + FP + + Y RD PA + Sbjct: 176 SSYAKVKKAEPLLTLKSLGFERSNIEFPP---------MDLSTKMLKTYHATRDFPADEK 226 Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS L +L G LS R+ K+ WL+ELIWR+F+ ++ +P Sbjct: 227 GTSHLGLHLRFGTLSVRELAREAKKYSP-----------VWLSELIWRDFFMQILWHFPQ 275 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 V + F P +KI W K Q W +G TG+P++DA MR+LN G+MHNR+RM+ ASF Sbjct: 276 VE-NQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASF 334 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+ W GE YF +LLD DL++NNG WQWAA +G D+ PYFRIFNP Q ++FDP Sbjct: 335 LCKHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDP 394 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKK 479 G +++ W+PE + YP P+VDH +A L + K Sbjct: 395 DGKYVQKWVPE--------------------YGTDEYPQPMVDHNEARGRCLQAFTKVLK 434 Query: 480 Q 480 + Sbjct: 435 K 435 >gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32] Length = 448 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 218/469 (46%), Gaps = 32/469 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ AL A +S V+A+++ + A + F+Y L ++ + Sbjct: 8 VLWFRRDLRLGDHAALLEASRHSK-HVLALYVLDEALLK--PGGAPREAFLYGCLEKLNE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + + E + + R + + +H Sbjct: 65 QL---GGRLMLVRGEP---AAEVVKAAKKIGAAAVHVSADTGPYGRRRDASVAKALAEHN 118 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + S + PG + Y+V+TPF +A R PA V Sbjct: 119 IEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTA-------RGWHSPADTGPSLVDW 171 Query: 191 SNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 PR P + GEQ AL + +F + + Y E RD P +GT++LSPY Sbjct: 172 VEPPRSLKIPKAPAVSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTTRLSPY 231 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G + PR DL + GA S +E+ WREF+ ++ P + Sbjct: 232 LRWGCIHPRTILA-------DLAGDDRVGAKSLRSEICWREFHADVLWHRPETAREN-YD 283 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + ++++ D + W G TG+PI+DA MRQL GWMHNR+RM+ ASFLVKDL + Sbjct: 284 HRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVKDLHLP 343 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W +G +FM L+DGDLASN WQW A G D+ PYFRIFNPT QG++FDP G ++R + Sbjct: 344 WWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGDYVRKY 403 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +PEL +VP + +H D YP P+VDH +L +Y Sbjct: 404 VPELRSVPGKAVHQ------LKDRPEGYPEPMVDHAHERQVSLERYGKI 446 >gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 431 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 221/479 (46%), Gaps = 52/479 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 MK+ + L WLR DLR+ DN L+ A SDA V+ VFI + + R+ Sbjct: 1 MKSK----ITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVD 55 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +I+ +L + SL + + + IE + + +F NR YE + R Sbjct: 56 YIHQALTDINISLKKYHSKLN----TYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIER 111 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 DK + + I K+ D V+ I+ Y VYTP+ K + L +++ Sbjct: 112 DKEIYYFFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVE 171 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + L + + ++ RD PA Sbjct: 172 LNFKNLFSQEYSDILTSKEIGFKKTDFKFSKPVLDASIIDDYDQY----------RDYPA 221 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +Q T+QL L G +S R+C + WL+ELIWREF+ ++ + Sbjct: 222 LQHTTQLGIALRFGTISIRKCVAFALKHNA-----------VWLSELIWREFFMQILYHF 270 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P V + F + I+W + + W +G TG+PI+DA MR+LN G+MHNR+RMI A Sbjct: 271 PRVVH-QSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVA 329 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++F Sbjct: 330 SFLCKHLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKF 389 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D +I+ WLPE + + YP PIV+H A L++Y A Sbjct: 390 DKDLQYIKKWLPE------------WNTPE-------YPSPIVEHTFARERALSEYKKA 429 >gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis] gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis] Length = 531 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 119/501 (23%), Positives = 197/501 (39%), Gaps = 37/501 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + W R LR+ DN AL AA ++ A++ +FI P R +S + F Sbjct: 1 MKHN-----SIHWFRKGLRLHDNPALLAAMNDC-AELYPIFILDPWFPRNMKVSVNRWRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + ++L + + E + +VT+L + E +RD Sbjct: 55 LIEALKDLDENLKKINSRLFVVR----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRD 110 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 +EK + S I+ + + ++ +L Sbjct: 111 ADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVP 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQ----NALHILRKFCK 224 + T Y ++ + +P GE +++ Sbjct: 171 TQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTW 230 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + E T+ LSPY+ G LS R W R+ E + S + Sbjct: 231 VCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGKK--HSDPPVSLHGQ 288 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P+ + +++W + LQAW +G TG+P IDA M QL Sbjct: 289 LLWREFFYTAGVGIPNFNKME-GNIVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSAS-TFFH 406 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 +FR+++P GK+ D G +I+ +LP L P +YI+ P + +YP Sbjct: 407 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYP 466 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIV+H A + + AA Sbjct: 467 KPIVEHDVASKQNIQRMKAAY 487 >gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis] gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis] Length = 533 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 117/492 (23%), Positives = 202/492 (41%), Gaps = 32/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W RN LR+ DN AL A S V +++ P+ + I + FI SL + Sbjct: 10 VHWFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFILESLADLDN 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + E + +++KL + ++D + K Sbjct: 69 NLKKLNSRLFVVR----GRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKL 124 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S I+N + ++++ +L + + G T Sbjct: 125 GVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCNT 184 Query: 190 PSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ Y ++ + +P GE AL L + K++ + ++ Sbjct: 185 PTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKKEDWVCKFEKPNT 244 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A T+ LSPY++ G LS R + RL E + + S +L+WREF+ Sbjct: 245 APNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKKKHSQPPV-SLHGQLLWREFFTT 303 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ ++ W+++ L AW + TG+P IDA M QL GW+H+ Sbjct: 304 AAYKTPNFNKM-VGNSLCLQVPWDQNDEYLAAWAEARTGYPYIDAIMTQLRREGWVHHLA 362 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F L+D D N G W W +++ YFR+++P Sbjct: 363 RHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNWMWLSASSFFHA-YFRVYSPV 421 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 GK+ DP G +IR ++P+L+ P +YI+ P + + +YP PIVDH K Sbjct: 422 AFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYPCPIVDHNKV 481 Query: 467 CHHTLNQYYAAK 478 +++ A+ Sbjct: 482 VTRNMSRMKEAR 493 >gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC 53653] gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC 53653] Length = 445 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 135/464 (29%), Positives = 207/464 (44%), Gaps = 20/464 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + S + +DLR+ DN L+AA +D +V+ +F+ + F Sbjct: 1 MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + L ++G D++E + Q ++ RR+ Sbjct: 60 LRDCLADLDAGLRERGGRLIVRT----GDAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L + L + + PG++ + V+TP+ +A V+ Sbjct: 116 ARLREALGGALRVHGAVLTAA-EPGTVTPSGKDHFAVFTPYFRAW--QGVELRRPFAAPR 172 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAI 239 +R+ V + + P P G + A R D A Sbjct: 173 GVRVPPGVRSEPLSALSLLGSGSPSPGLPEGGERAGRRRLDAWLRSGLGAYADRQDDLAG 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TS+LSPYL G LSP + +R ++ GA +++ +L WR+F+ ++A P Sbjct: 233 DATSRLSPYLHFGCLSPVELVHRARKSGG-------PGADAFVRQLAWRDFHHQVLAARP 285 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W D + AWK G TG+PI+DA MRQL GWMHNR R++ AS Sbjct: 286 DASHTDY---RPRGDRWRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLVAS 342 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q +RFD Sbjct: 343 FLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPLAQARRFD 401 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 P GT++R W+PEL ++P + +H P + D +L YP PIVD Sbjct: 402 PDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIVDL 445 >gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 496 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 112/478 (23%), Positives = 179/478 (37%), Gaps = 34/478 (7%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + +VW + DLRI D++ L A V+ +++ W+Q S RQ F SL Sbjct: 1 MSALQIVWFKRDLRIVDHRPLIEASKR--GPVLPLYVVETRLWQQPDSSKRQWLFCRESL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L +Q++L+ G D +E L+ LQ + L+ + + + Sbjct: 59 LDLQRALATLGQPLVLRS----GDVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVG 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + + + + Q P Sbjct: 115 AWAKQHGICWVEIPQFGVTRRLTSRNGWAKRWEEQMAEPITQPPTSLPRLDGLDPGKIPD 174 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ- 244 P G + R F ++V Y P T Sbjct: 175 LPPGAIAPDPCPHRQL--------GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCS 226 Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS YL+ G LS R+ G S+ + L W + + PS+ Sbjct: 227 RLSAYLTWGCLSMREVLQ-------QSRTVKGRGVNSFGSRLHWHCHFIQKLEDEPSIEF 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P + L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 280 -QDFHPLMRGLRDFDRVKLQ-AWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L + WR + Q +D + + Q +G+ S+ RI+NP QG+ DP+G Sbjct: 338 NLWLPWRQSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGRDHDPEGL 395 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 FIRHW PEL +VP YIH P +L P PIVD + N+ ++ ++ + Sbjct: 396 FIRHWCPELRDVPEIYIHEPW------ELGGGMPSPIVDVTASMQEAKNRIWSIRRSA 447 >gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 438 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 221/473 (46%), Gaps = 46/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66 + LVWLR DLR+ DN ALY A S VI VFI R+ F+ + Sbjct: 4 PLSLVWLRRDLRLHDNAALYYALK-SGRPVIPVFIFDRVILDALDDRLDRRVEFLVQEVN 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L++ G + ++ + +F N YE RDK + + Sbjct: 63 RLHDELAKLGSTIIVR----YGKPVDVWKELIETYTIGDVFTNHDYEGYAKERDKAIGEL 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L R I + D + +L+ Y V+TP+ + L + + Sbjct: 119 LAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTD-----FYLKSYPTE 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQ 244 + + A P+GE + + Y E RD PA+ TSQ Sbjct: 174 NYSSHYWQTKPEPAITLADMGFQPVGEPFPAETVSDKLLDT---YNETRDFPALPHSTSQ 230 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G +S R+ + K ++LNEL WR+FY ++ +P V Sbjct: 231 LSIHLRFGTISIRELARQAKAADDQ----------TFLNELCWRDFYFQVLDHFPHVEQY 280 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F ++IEW + W +G TG+PI+DA MRQLNTIGWMHNR+RMITASFL K Sbjct: 281 -SFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITASFLCKH 339 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFDP+ + Sbjct: 340 LLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFDPKSVY 399 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE++ +YP P+VDH A ++ Y A Sbjct: 400 IRQWVPEVDK-------------------PSYPKPMVDHAMARQRAIDTYRKA 433 >gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella blandensis MED217] Length = 434 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 216/472 (45%), Gaps = 44/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN A + V+ +FI E + + FI+ +L + Sbjct: 3 TVNIFWFRRDLRLDDNVGFLEALK-GEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61 Query: 68 VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G + S +V +F N YE + RDK ++K Sbjct: 62 MRDELQEKHGSSIALYH----GKSETIWKQLLEDYKVDTVFTNHDYEPYALERDKKIKKL 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + + ++F D V+ ++ Y VYTP++ + + + L Sbjct: 118 LEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKWQEVFDADKHLKIHYTSQYLE 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + S +P I + + Y + R+ PA GTS L Sbjct: 178 NLIEHSRLPNISLSDMGFKKSSIEI-------PDYEVTPTLIQNYEDTRNFPAQDGTSHL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E + +ELIWREF+ ++ YP + Sbjct: 231 GPHLRFGTVSVRKMVKKAIAEKN----------TVFWSELIWREFFMQILYHYPE-TVNN 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++IEW + + WK+G TG+ ++DA MRQLN G+MHNR+RM+ ASFL K L Sbjct: 280 AFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVASFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD +I Sbjct: 340 LIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKKYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + ++PE + + +YP +VDHK+A L Y AA Sbjct: 400 KEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432 >gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99] Length = 447 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 220/473 (46%), Gaps = 29/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ +L + +V + + + + + RRD+ + Sbjct: 57 QLNDALQGRLLV-------TRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAG 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G ++ + Y+V+TPF + +A + P A L Sbjct: 110 LGRVPLVATGSPYLVSP-GRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T P + GE A+ F K+ Y RD P +GTS++S Sbjct: 169 AQTDIEQCEI---PDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G + PR + +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AYLKFGTIHPRTMVAGM--------DLTGTGARSYLRELAFRDFYGAVLHHWPASAWHNW 277 Query: 307 FIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + + WK G TG+P++DA MRQL G+MHNR+RMI ASFLVKD Sbjct: 278 NSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVKD 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++FDP G + Sbjct: 338 LHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGDY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 398 IRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446 >gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 491 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 112/476 (23%), Positives = 178/476 (37%), Gaps = 33/476 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ +VW + DLR+ D++ L A V+ +++ PE W+Q S RQ F SLL+ Sbjct: 3 SLQIVWFKRDLRVDDHRPLLEAAAR--GPVLPLYVVEPELWQQPDASERQWLFCRESLLE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++L++ G D ++ L+ Q V L+ + + + Sbjct: 61 LRQALAELGQPLVVRS----GDVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAW 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + + Q VPA+ P Sbjct: 117 ARAHGIQWGEIRQFGVTRRMRSRNGWAKRWE-------EQMAEPITPAPAGVPALEEIDP 169 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 P P G L LR F + + Y P T L Sbjct: 170 GVIPERPCPELLPDDCSQRQT-GGRSIGLGELRDFLQHRAPCYQRAMSSPKSAFTGCSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL+ G LS R+ G S+ + L W + + P + Sbjct: 229 SAYLAWGCLSMREVLQT-------SRHHSGRGVSSFESRLHWHCHFIQKLEDQPEIEFSD 281 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P+ I L AW +G TG P +DA MR L GW++ R+R + SF +L Sbjct: 282 -FHPYMRGIRETNA-ERLAAWTEGRTGVPFVDACMRALKAHGWINFRMRAMLMSFASYNL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR + Q +D + + Q +G+ S+ RI+NP QG DPQG FI Sbjct: 340 WLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQGVFI 397 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W PEL +V T +IH P L PIVD + ++ + ++ + Sbjct: 398 RQWCPELKDVSTIHIHEPW------MLGGGRSAPIVDVTTSMQLAKDRIWEIRRSA 447 >gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264] Length = 486 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 148/493 (30%), Positives = 224/493 (45%), Gaps = 24/493 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L R + ++ L P I+N + Y+V+ + +A ++ + P Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPPLAAPR 174 Query: 180 PAIRLTGPVTPSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A +LR F ++ Y Sbjct: 175 RLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W + +L+EL WREF Sbjct: 235 ATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAHRAATQA-DLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 CWAQLYRFPDLPRRN-LRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHK 464 P QGK+FDP G ++R W+PEL +P IH L YP+P+V H Sbjct: 413 PVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHD 472 Query: 465 KACHHTLNQYYAA 477 A L+ + A Sbjct: 473 AARRRALDAFATA 485 >gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414] Length = 482 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S AKV+ VF P+ + ++ + ++ L +Q+ Sbjct: 6 LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G + +E + + +F+N E RD+ + L+ Sbjct: 65 RYAQVGSQLLILH----GNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKSN 120 Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I D +L P I Y VY+PF K + +L A Sbjct: 121 SIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAEQ 180 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + GE A L++F + Y EQR++P + G Sbjct: 181 EIAKQAGVIPLPTARDLGFIWDGELSISPGEAAAQERLQEFTDSAITEYQEQRNLPGVDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LS L GV+ RQ W L+ + + + +W EL WREFY+H M +P Sbjct: 241 TSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W + QAW +G TG+PI+DAAMRQLN +GWMHNR RMI ASF Sbjct: 301 LAEG-AYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D P RIFNP Q ++FD Sbjct: 360 LTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKFDG 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +G +IR W+ EL +V T+Y+ S+ YP PIVDHK Y K Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLELQSIGYPAPIVDHKVQQGLFKKMYQQQK 475 >gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP] Length = 757 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 104/487 (21%), Positives = 180/487 (36%), Gaps = 29/487 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V +VW + DLR++D+ AL A V+ ++I PEQ + ++ L Sbjct: 3 PVAVVWFKKDLRVSDHAALSRAAER--GPVLPLYIYEPEQLGHEEFAGHHLTYLNECLHD 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L++ G + +++E L++ + V L+ +++ L Sbjct: 61 LSARLARLGAPLVIR----YGEAVEVLEALSREVTVGSLWAHQETGNGVSFARDLRVHAW 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 ++ ++N A + + L + + T Sbjct: 117 ARARGIPFYEPPQQGVIRRMVNRDGWAD--------AWEERMSAPPLPVPALRGVAGTPA 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P + GE A IL F + + Y+ P A S+L Sbjct: 169 SLGVLDHAALRVPLGR-RVIPQGGEAAAHDILESFLQRRGRDYMWAMSSPLTAEDACSRL 227 Query: 246 SPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S L+ G +S R L + + + S+ + L WR+ + + P + Sbjct: 228 SAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHWRDHFIQRLESEPRM 287 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E + + Q W++G TG+P+IDA MR L GW++ R+R + SF Sbjct: 288 EFENLNRAYDGLREPHWNEEYFQRWQEGQTGYPLIDATMRMLRATGWLNFRMRAMLVSFA 347 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + L + WR + Q LD + + Q +G + RI++PT Q + DP Sbjct: 348 AQHLWLHWRRPGLFLARQWLDNEPGIHWS--QMQMQSGTVGINRSRIYSPTRQAREQDPD 405 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR W+PEL VP +I P L +YP P+VD + Sbjct: 406 GEFIRRWVPELAGVPAPHIWRPWELPPLAARGLGLRLGRDYPYPVVDEHAPAREAHRRLQ 465 Query: 476 AAKKQSL 482 A + L Sbjct: 466 AVRDTPL 472 >gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana] Length = 681 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 134/486 (27%), Positives = 221/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA V A+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group] Length = 665 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 133/504 (26%), Positives = 222/504 (44%), Gaps = 43/504 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 66 SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P I + + + + + + ++ + P + + G + Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGLES 182 Query: 190 PSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + G +NA +L +F + Y + Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R+L Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI--- 413 +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP I Sbjct: 362 ISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIMEN 421 Query: 414 -----------QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 QG+++DP G ++R W+PEL +PT++IH P +L NY Sbjct: 422 VIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNY 481 Query: 457 PLPIVDHKKACH---HTLNQYYAA 477 P PIVD A +++ + Sbjct: 482 PKPIVDLHIARECLDDSISTMWQL 505 >gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 480 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 183/477 (38%), Positives = 258/477 (54%), Gaps = 19/477 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVWLRNDLR+ DN ALY A H D V+ TPEQWRQH + + L+ V Sbjct: 1 MNLVWLRNDLRLEDNPALYHATHQGDT--CCVYSITPEQWRQHDDAPAKIALWRERLIAV 58 Query: 69 QKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 Q L + I + + S + + L + +++N +Y +NE +RD+ + Sbjct: 59 QHELREHNIPLKLIRFTNDNESTYSNMPAALLDLANRIDAHSIYFNNEYPLNEKQRDRHV 118 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + +D V++ PG++ YKV+TPF + + + L + PA Sbjct: 119 SELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGKPAT 178 Query: 183 RLTG--PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + ++ ++P + L +F + Y E RDIP++ Sbjct: 179 QNASLLSLDEDVKTQWLVEDTPYRQDLWPAKTEAIHQRLHQFAANRASNYKEMRDIPSVN 238 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL+ G +S RQC + +++ + + W+ ELIWREFYRHL+ YP Sbjct: 239 GTSTLSPYLACGAISVRQCISAIRQNVEE------WRSNQWITELIWREFYRHLIDSYPH 292 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + FI + I WN D AW +G TG+PI+DAAM+QL GWMHNRLRM+TA+F Sbjct: 293 LSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRMVTAAF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LLVDWR GE +FM LLDGD ASNNGGWQWAASTG D+ PYFRIF+P Q +RFD Sbjct: 353 LTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQSERFDK 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +G FI+ LPEL ++ + IH P+S K Y P+VD+K A L +Y A Sbjct: 413 EGVFIKKLLPELCSLTKKTIHTPNSEQRKTY---GYIEPVVDYKWARQRALEEYATA 466 >gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 15998] gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL 11379] Length = 451 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 203/467 (43%), Gaps = 20/467 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V +DLR+ D+ L AA ++D +V+ +F+ R + + F+ L + Sbjct: 2 VLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDTG 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L +G + + Q + +R++ + + L Sbjct: 61 LRDRGGRLIVRRGGTAREV----KRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 116 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 D+V+ + F + + +L P Sbjct: 117 CELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAPRTVRVPDGVSG 176 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 + D + GE+ ++ + + Y + D A TS+LSP+L Sbjct: 177 DALPDRDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSPHLHF 236 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G +S + NR +E+ G +++ +L WR+F+ ++A P Sbjct: 237 GTVSAAELANRAREKGG-------PGGEAFVRQLAWRDFHHQVLAARPDASWSDY---RP 286 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 W D ++AWK G TG+P++DAAMRQL GWMHNR RM+TASFL K L VDWR+ Sbjct: 287 RHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVDWRV 346 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G +F+ L+DGD+A+N WQW A TG D+ P R+ NP IQGKRFDP G ++R W+PE Sbjct: 347 GARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRRWVPE 405 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L V +H P + ++YP P+VD +A +++ A+ Sbjct: 406 LAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEAR----SRFERAR 448 >gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium SCB49] Length = 435 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 209/471 (44%), Gaps = 43/471 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V++ W R DLR+ DN + A + V+ +FI E + + FI+ +L + Sbjct: 4 KVNVFWFRRDLRLDDNLGFFKAL-HGKYPVLPIFIFDSEILNELPKDDARVTFIFNTLQK 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L +KG +Q ++ V + N YE+ RD+ ++ L Sbjct: 63 MRDALQEKGSSLAMYQ----GKPLDIYKQLIKDFDVQNVITNHDYEVYAQDRDEEIKTFL 118 Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + ++ Y VYTP++ + + + L Sbjct: 119 AQKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDA 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + S +P + + Y R+ PA+ GTS L Sbjct: 179 LIEHSRLPNLSLSDIGFTKSSIEV-------PSYDVRPTLIQEYENTRNFPAVDGTSHLG 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S R+ + E + +++NELIWREF+ ++ +P Sbjct: 232 PHLRFGTVSVRKMMRKAISEKNE----------TFMNELIWREFFMQILWHFP-KTQHNA 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F ++I W + + WK+G TG+ ++DA MR+LN G+MHNR+RM+ ASFL K LL Sbjct: 281 FRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKHLL 340 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +LLD + +SN G WQWAA +G D+ PYFRIFNP Q +FD T+IR Sbjct: 341 IDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTYIR 400 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PE + YP +VDHK+A L Y A Sbjct: 401 KWIPEFE-------------------TDKYPNKMVDHKEARERCLKVYKEA 432 >gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 595 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 124/495 (25%), Positives = 200/495 (40%), Gaps = 31/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67 ++W R LR+ DN AL AC ++ V VF+ P +Q + +S + +F+ SL Sbjct: 7 SIIWFRKGLRLHDNPALLEACKDAK-HVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEKR 126 +Q+S +G + E + VT+ F + +VR + Sbjct: 66 LQRSFQARGSRLLVLR----GKPEEVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLA 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----------VQADLR 175 + V + L ++ + L+ + Sbjct: 122 AEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPP 181 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + +P+ P+ F P + L + K + D Sbjct: 182 AEDMPSAAPAATGVPTWQEVGFKEPPLTVFKGGETEALARLEAAFQDPKWVAGFQKPDTD 241 Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 A + + LSPYL G LS R ++ E S +L+WREF+ + Sbjct: 242 PSAWEKPATTVLSPYLKFGCLSAR-LFHARLLEVYRRHPAHSQPPVSLRGQLLWREFF-Y 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + P ++I+W+ + L AW++ TGFP IDA M QL T GWMH+ Sbjct: 300 TVGSTTPNFHRMAGNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLA 359 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G E F L+D D N W W +++ S YFR+++P Sbjct: 360 RHSVACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPV 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 + GK++DP+G FIR +LP L ++P +YI+ P + + +YP PIVDH A Sbjct: 419 VFGKKYDPEGRFIRKFLPVLKDMPAKYIYEPWTAPLEVQRKAGCVVGRDYPAPIVDHAVA 478 Query: 467 CHHTLNQYYAAKKQS 481 + + AA ++S Sbjct: 479 SKACIARMAAAYRRS 493 >gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum Z-7303] Length = 459 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 211/472 (44%), Gaps = 20/472 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQV 68 + R DLR+ DN L A NS+ VI FI P + + F+ SL + Sbjct: 7 SIFIFRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ KG + + + + + +F NR Y +RD+ +K + Sbjct: 66 KHQLNDKGAKLYLFH----GIAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACE 121 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +LL + Sbjct: 122 MYNVDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASKFDVNLPEMSSKQNFYTGKIE 181 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 N F + G NAL IL + K Y +RD P + T+ LS + Sbjct: 182 NELNDTDHFLKAKRNKPLYVKGGRSNALKILENLDEFKN--YENERDYPFLDATTGLSAH 239 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 G +S R+ + + ++ + +L WR+FY +L YP + F Sbjct: 240 NKFGTISIREFYYTVIDKLGIS--------HPLITQLYWRDFYTYLAHHYP-YIFKQSFK 290 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + IEW+ DS + W G TGFPI+DA +R++N G+MHNR+RMITASFLVKDL +D Sbjct: 291 KKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLHID 350 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ GE+YF +L+D D + N G WQW+ASTG D+ P+FRIFNP Q K+FD + +I+ W Sbjct: 351 WKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIKKW 410 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + EL NV + IH + +KN YP PI++HK +L + A ++ Sbjct: 411 IEELRNVSCKSIH---NLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459 >gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M] gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M] Length = 447 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 220/473 (46%), Gaps = 29/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ AL AA + + V+A F+ P G+ R+ F+ SL Sbjct: 1 MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+ +L + +V + + + + + + RRD+ + Sbjct: 57 QLNDALQGRLLV-------TRGRPEQRIPLIAKAIEASSVHVSGDFAPFGRRRDERVAAG 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G ++ + Y+V+TPF + +A + P A L Sbjct: 110 LGRVPLVATGSPYLVSP-GRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 T P + GE A+ F K+ Y RD P +GTS++S Sbjct: 169 AQTDIEQCEI---PDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR + +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AHLKFGTIHPRTMVAGM--------DLTGTGARSYLRELAFRDFYGAVLHHWPASAWHNW 277 Query: 307 FIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + WK G TG+P++DA MRQL G+MHNR+RMI ASFLVKD Sbjct: 278 NSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVKD 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGDLASN GWQW+A G D+ PYFRIFNP+ Q ++FDP G + Sbjct: 338 LHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGDY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL +V +H YP PIVDH L +Y+ Sbjct: 398 IRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446 >gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa] Length = 704 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 138/512 (26%), Positives = 223/512 (43%), Gaps = 49/512 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL AA VIAVF+ PE+ + ++ SL Q+ Sbjct: 11 CSIVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L +++F+N Y+ + RD + L Sbjct: 69 DSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALT 125 Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I KSF+ +L P + + + + ++ F + + + LP I Sbjct: 126 AEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLL 185 Query: 188 VTPSNIPRFFDY-----------------------------PFQAIDPMFPIGEQNALHI 218 + + + + G NA Sbjct: 186 LHHTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKA 245 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKP 274 L F + Y + R TS LSP+L G +S R+ ++ L+ + + Sbjct: 246 LTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAG 305 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + +L + RE+ R++ +P +P + + W D + +AW+QG TG+P Sbjct: 306 EESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYP 364 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 ++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ Sbjct: 365 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 424 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---- 450 T DS + RI NP +G +FDP G ++R WLPEL+ +PT++IH P + + Sbjct: 425 ITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAA 484 Query: 451 --DLSLNYPLPIVDHKKACHH---TLNQYYAA 477 +L NYP PIV +A L+Q + Sbjct: 485 GIELGSNYPRPIVGLDEAKARLHEALSQMWQL 516 >gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 451 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 216/468 (46%), Gaps = 24/468 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L R DLR+ DN L A S+ +VI FI + S + F+ SL + + Sbjct: 8 LFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLNE 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++ + + S E ++ L+ ++ +F N Y ++ ++K + Sbjct: 67 QLIKRKTNLRIFR----GRSEEIIEKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQK 122 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I + LL ++ Q + + + I+ Sbjct: 123 NIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVR-------SKIKNNFRNYS 175 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + + I+ + + + Y + RD P + T++LS ++ Sbjct: 176 LDKIKNDNSLEITIENKEKMEGGRRNALKILKNISEYKNYQKTRDYPGLDKTTKLSAHIR 235 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +S R+ + +KE + +N+L WREF+ +++ +P+ + F Sbjct: 236 FGTISVREAYQAIKE--------NLGIDHTLINQLYWREFFTYVLHHFPN-SKSRTFKKK 286 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 KI W+ + W +G TGFPI+DA MRQLN G+MHNR+RMI ASFL KD+ +DW+ Sbjct: 287 FRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKDMHIDWK 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE YF +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD +I+ W+P Sbjct: 347 LGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNYIKKWIP 406 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL + +YIH K L YP PI++HK + T + K Sbjct: 407 ELETLQPKYIHNLWK---KYPEGLTYPKPILNHKIESNKTKIIFKNQK 451 >gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707] Length = 457 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 144/470 (30%), Positives = 210/470 (44%), Gaps = 33/470 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW R DLR+ D L AA + + +F+ + F+Y SL + Sbjct: 18 SLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLSALD 71 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + +V + D +E + ++ + Y RD + Sbjct: 72 EQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDA----AVAE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + + PG + YKV+TP+ K + + +A + + Sbjct: 121 HVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDPDDV 180 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + R +A P GE AL FC + + Y +RD P + TS++S YL Sbjct: 181 DVSKARTAIPAPEASGPA--AGEGAALERWSAFCDDDLIRYDAERDRPDLDTTSRMSVYL 238 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G + PR L + GA + ++ WR+FY ++ P Sbjct: 239 KFGNIHPRTMLADLARKRS-------HGAEQYRRQVAWRDFYADILFQRPDSARRNYDAK 291 Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVKDL + Sbjct: 292 FDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLLSEGWMHNRVRMIVASFLVKDLHL 351 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +FM L+DGDLASN GWQW A +G D+ PYFR+FNPT QG++FDP G ++R Sbjct: 352 PWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGDYVRR 411 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PEL V + +H K+ YP PIVDH + L +Y A Sbjct: 412 WVPELRGVRGKAVHT-----LKDARPQAYPDPIVDHAEERREALARYGAL 456 >gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] Length = 486 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 127/489 (25%), Positives = 220/489 (44%), Gaps = 29/489 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ LY A A +I + Q++ + F+ S+ Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL G Q + + Q + ++++ + E + +EK Sbjct: 66 TDLKKSLQDLGSNLIIRQ----GYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + K F + L + ++ +V+T FRK + +N + P L Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSL 181 Query: 185 TG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-I 236 + + + ++ E + + + Y E R+ + Sbjct: 182 PDIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKEYKETRNGM 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G LSPR + +++ + + + + EL+WR+++R + A Sbjct: 242 LGADYSSKFSPWLANGCLSPRYIYEEVQKY--EEKRIKNNSTYWLIFELLWRDYFRFISA 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + + W +D + W++G TG+P++D MR+L G+M NR R Sbjct: 300 KHGNKIFYQSGLQGVDI-PWKEDQERFKLWQEGNTGYPLVDGNMRELAATGFMSNRGRQN 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 359 VASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G +I+HWLPEL +P Q IH P + + +NYP P+VD K+ Sbjct: 418 DYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNYPRPVVDFFKSVKAN 477 Query: 471 LNQYYAAKK 479 Y AA K Sbjct: 478 EKMYNAAIK 486 >gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 606 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 164/526 (31%), Positives = 236/526 (44%), Gaps = 59/526 (11%) Query: 9 VHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYAS 64 V + W+R DLR++DN+AL A + ++ + + +P +R H S R+ F+ + Sbjct: 75 VVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRIDFVLRN 134 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q L + I E + + L N ++E++E+RRD + Sbjct: 135 LSDLQARLHKLNIPLWTITVEPRHQIPEKIIQLVSSWGASYLTANIEHEVDELRRDIQVL 194 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + I F L + + NL+ ++L A Sbjct: 195 NLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWANLINSNLDEYIAAAEDC 254 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV----------------- 227 + F+ P G + + + + Sbjct: 255 HPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAAEELLNQFLNSP 314 Query: 228 -----------------------------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 Y R+ P + GTS+LS YL+ GV+SPR Sbjct: 315 LKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSAYLAAGVISPRA 374 Query: 259 CWNRLKEEFVDLL--------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 C + G W +EL WR+FY+H++A +P VCM KPF Sbjct: 375 CIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWPRVCMRKPFNLK 434 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + W +D LL+ WKQG TG+P IDA MRQL IG+MHNR RM A FL KDL++DW+ Sbjct: 435 YESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAMFLTKDLMMDWK 494 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE++FM L+DGDL SNNGGWQW+ASTG D+ PYFRIF P Q ++ DP G FIRHW+P Sbjct: 495 LGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSDPNGDFIRHWVP 554 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475 EL ++ + IHAP L + NYP PIVDH A L +Y Sbjct: 555 ELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARYK 600 >gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131] Length = 469 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 237/480 (49%), Gaps = 24/480 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V ++W R DLRI D KAL A S + + VF EQ S QS FI S+L Sbjct: 2 VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 +K L +GI + D + + Q T +++N RD+ + Sbjct: 59 RKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFF 114 Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L I+N + Q YKV+TP+ + + ++ L Sbjct: 115 KKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNL 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + A L +F ++++ Y RD PA GTS+LS Sbjct: 175 ETPDDVLRTVESFKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L IG + R ++ +++ L G ++L EL WR+FY + YP +P Sbjct: 233 PFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQP 285 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL Sbjct: 286 IQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLL 345 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 D R+GE+YF QL+D D ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ Sbjct: 346 CDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +LP+L +VP Y+ P + +Y PIVDH K + +Y AK++ Sbjct: 406 AYLPQLEHVPENYLLEPGKMPKNLQESVSCIIGTDYAQPIVDHAKQREQAIAKYEWAKEK 465 >gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus] Length = 584 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 197/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 15 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 73 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 74 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 129 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +ALI + ++ V + ++ Sbjct: 130 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCR 189 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 190 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 249 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 250 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 308 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 309 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 367 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 368 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 426 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 427 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 486 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 487 SRLNIERMKQIYQQ 500 >gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957] gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding [Ralstonia solanacearum CFBP2957] Length = 522 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 225/474 (47%), Gaps = 29/474 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65 LVW R DLR D+ AL+ A + +V F+ + R+ FI A++ Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G D + + S Q V +F N E + RD + Sbjct: 86 EALRSALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLP 178 L + F D V+ +LN + Y V+TP++ A + + D L Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A G + + + + + L ++ Y +RD PA Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSVIALPTGMSGAEALLDDFATRMDDYHARRDYPA 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 ++G S LS +L G +S R R + GA +WL+ELIWR+FY ++ Sbjct: 262 VRGPSYLSTHLRFGTVSIRTLAARAHSAM----LHGSRGAATWLSELIWRDFYFMILHHR 317 Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G F P ++I W AW+ TG+P++DAAM Q+ G+MHNRLRM Sbjct: 318 PDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRM 377 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL+KDL VDWR GE +F L D D A+NNGGWQWAAS+G D+ P+FRIFNP Q Sbjct: 378 VTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQS 437 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 ++FDPQG FIR +LP+L +P +Y+HAP + L YP PIV+H Sbjct: 438 EKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVEH 491 >gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST] gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST] Length = 961 Score = 279 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 188/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL + VFI P + + F+ L + + Sbjct: 7 VHWFRKGLRLHDNPALREGLRGA-RTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDDLDR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + + L + T L + E RD + + + Sbjct: 66 NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKEL 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + +A+I ++ + + T Sbjct: 122 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANT 181 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 182 PQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 241 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 242 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 300 ATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 358 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 418 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIAS 477 Query: 468 HHTLNQYYAAKKQ 480 + + + Sbjct: 478 RANMERIKQVYQH 490 >gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max] gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max] Length = 682 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 221/486 (45%), Gaps = 25/486 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL A V+AVFI PE+ Q+ ++ SL + Sbjct: 8 SIVWFRRDLRIEDNPALTAGVRA--GAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLD 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + D++ L T+LF+N Y+ + RD ++ L Sbjct: 66 SSLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 122 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I ++ L P + + + + + F + + + LP I Sbjct: 123 QGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 182 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G NA L F + Y + R TS Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSP+L G LS ++ ++ ++ + + + +L + RE+ R++ +P Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 302 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 303 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FD Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 421 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470 P G ++R WLPEL+ +PT++IH P + + +L NYPLPIV A + Sbjct: 422 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEA 481 Query: 471 LNQYYA 476 L++ + Sbjct: 482 LSKMWQ 487 >gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries] gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries] Length = 596 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 122/494 (24%), Positives = 198/494 (40%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 27 SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 85 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 +SL + + + + VT+L + E RD +++ + Sbjct: 86 RSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 141 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ G Sbjct: 142 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCQ 201 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 202 AEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKHLERKAWVASYERPRM 261 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 262 NASSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 320 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 321 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMAQLRQEGWIHHLA 379 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 380 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 438 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H +A Sbjct: 439 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAEA 498 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 499 SRLNIERMKQVYQQ 512 >gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1] Length = 446 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 227/470 (48%), Gaps = 29/470 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ D AL AA D V+A ++ P +R+ ++Y +L +++S Sbjct: 2 LWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATG--GSRRLQYLYDALRDLRES 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + ++ D + + + + + + +RRD+ + L Sbjct: 59 LDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGDVE 111 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + ++ P G + YKV+TPF A Q+ + S P + P + Sbjct: 112 LVATGSPYLVSP-GRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPR-SAHWLDPADVA 169 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P D P ++ P GE A ++F + + Y E R+ P + TS++S +L Sbjct: 170 GKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLKF 229 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--IP 309 G + PR L GA ++L EL +R+FY ++A +P Sbjct: 230 GTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRSTWWNWNSTFD 280 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + +AWK G TGFPI+DA MRQL G++HNR+RMI ASFLVKDL + W Sbjct: 281 AIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDLHLPW 340 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + G +F+ QL DGD+A+N GWQWAA G D+ PYFR+FNPT QGK+FDP G +++ W+ Sbjct: 341 QWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYVKRWV 400 Query: 430 PELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL +V + +H D +YP PIVDH + L +Y + + Sbjct: 401 EELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 445 >gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp. Tu6071] Length = 481 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 208/466 (44%), Gaps = 20/466 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L + Sbjct: 30 SIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLD 88 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L ++G + + + ++ R L L+ Sbjct: 89 AGLRERGGRLVVR----AGEPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 144 Query: 130 R--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + LPPG ++ + + V+TP+ + ++ L P Sbjct: 145 TGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLSVPS 201 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S+ + + GE+ L + ++ + Y + D A GTS+LSP Sbjct: 202 KVRSDGVPRREDVEGVSPGLARGGEREGRARLADWRRDGISRYEDLHDDLAGDGTSRLSP 261 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G LS +C +R + GA +++ +L WR+F+ ++A P+ Sbjct: 262 YLHFGALSAAECVHRARAVGGA-------GADAFVRQLCWRDFHHQVLAARPAAAHEDYR 314 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + H AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K L + Sbjct: 315 PRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKTLYL 374 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++DP+G ++RH Sbjct: 375 DWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDYVRH 433 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 W+PEL + + +H P + YP P+VD + Sbjct: 434 WVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 477 >gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis] Length = 605 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 117/491 (23%), Positives = 192/491 (39%), Gaps = 31/491 (6%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W R LR+ DN AL +D + V+I P + + F+ L + +L Sbjct: 1 WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 + + + + ++TKL E RD ++K + Sbjct: 60 RKLNSRLFVIR----GQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGV 115 Query: 133 CKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 S I+ + + LI + ++ + A + TP Sbjct: 116 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKCTTPV 175 Query: 192 NIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 Y +++ ++P GE AL L + + K + +R Sbjct: 176 LDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNAN 235 Query: 241 G----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 T+ LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 236 SLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWREFFYTAAT 294 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ R Sbjct: 295 NNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA 353 Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 A FL + DL + W G + F LLD D + N G W W + + +F + P G Sbjct: 354 VACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFG 412 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469 +R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+H +A Sbjct: 413 RRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEASRL 472 Query: 470 TLNQYYAAKKQ 480 + + +Q Sbjct: 473 NIERMKQIYQQ 483 >gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae] Length = 961 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 188/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL + VFI P + + F+ L + + Sbjct: 7 VHWFRKGLRLHDNPALREGLRGA-RTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDDLDR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + + L + T L + E RD + + + Sbjct: 66 NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKEL 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + +A+I ++ + + T Sbjct: 122 GIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANT 181 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 182 PQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMT 241 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 242 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 300 ATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 358 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT++IH P + + K + +YPLP+V+H A Sbjct: 418 FGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIAS 477 Query: 468 HHTLNQYYAAKKQ 480 + + + Sbjct: 478 RANMERIKQVYQH 490 >gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum] gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum] Length = 679 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 219/492 (44%), Gaps = 28/492 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VIAVFI PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIYAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + DSI L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRT 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I ++ L P + + + + ++ F + + + LP I Sbjct: 116 KEILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + R Sbjct: 176 ISGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S R+ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 MSFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 VGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAK 474 Query: 468 ---HHTLNQYYA 476 L+Q + Sbjct: 475 VRLEQALSQMWQ 486 >gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170] Length = 436 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 217/473 (45%), Gaps = 45/473 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN L A V+ +FI E Q + + +FIY ++ Sbjct: 4 KISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIET 62 Query: 68 VQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++ +K IE ++ + + +F N YE + ++RD +++ Sbjct: 63 LNTNIKKKHKSSIAIFH----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKEL 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + I ++ D V+ I+ Y VYTP++ +N + Sbjct: 119 LANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLESN 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQ 244 V +N+P F + + Y R+ P GTS+ Sbjct: 179 NFVNNTNLPFFELRDIGFESSSITV-------PEFIITITFIEGYETTRNYPGATNGTSK 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 + P+L G +S R+ + + NELIWREF+ ++ +P+ + Sbjct: 232 IGPHLRFGTVSIRKIVKHAINSDNKV----------FWNELIWREFFMQILWHFPN-TVN 280 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++IEW + + WK G TG+P++DA MR+LN G+MHNR+RM+TASFL K Sbjct: 281 NAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTASFLCKH 340 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q +FD Q T+ Sbjct: 341 LLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFDKQKTY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+PEL NYP IVDHK A L Y A Sbjct: 401 VNQWVPELQEF-------------------NYPTQIVDHKFARERCLKVYKEA 434 >gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87] Length = 437 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 216/471 (45%), Gaps = 43/471 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++ W R DLR+ DN A+ + V+ +FI PE + FI+ +L Sbjct: 5 KINIFWFRRDLRLDDNVGFLASLKE-EHPVMPIFIFDPEILDNLPEDDARVTFIFETLQD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + E + K+F NR YE RD+ ++K L Sbjct: 64 MRNELQENH---HSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLL 120 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++F D V+ ++ Y VYTP+ K +++ +DL+ + L Sbjct: 121 DENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLKIHYT-SQFLDN 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V + +P + + Y + R+IP+ +GTS+L Sbjct: 180 LVQNTRLPNLSLSDIGFKKSSLKV-------PDFDTTPSLIQRYEDTRNIPSKEGTSRLG 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S R+ + E ++L EL+WREF+ ++ PS Sbjct: 233 PHLRFGTVSVRKMVKKANNEKNK----------TFLQELVWREFFMQVLYHNPSTVTD-A 281 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F + I+W + + WK G TGFP++DA MRQLN G+MHNR+RM+ SFL K LL Sbjct: 282 FKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCKHLL 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +LLD +++SN G WQW A +G D+VPYFRIFNPT Q +FD +I+ Sbjct: 342 IDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKKYIK 401 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+ E S +YP +VDHK+A L+ Y A Sbjct: 402 EWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433 >gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + +D + V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + ++++L Y E RD + K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + A + Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GKCSTPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + F P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRINIERMKQIYQQ 490 >gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor] Length = 679 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 131/487 (26%), Positives = 215/487 (44%), Gaps = 25/487 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL A V+ +FI PE+ + ++ SL + Sbjct: 8 CSIVWFRRDLRVEDNPALAAGVRA--GAVLPLFIWAPEEEGHYYPGRVSRWWLKQSLSHL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L ++F+N Y+ + RD ++ L Sbjct: 66 DISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHRAKEVLT 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ L P + + Q + + F + + + LP I Sbjct: 123 AEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLPPKRIISGDL 182 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ F+ + + + G NA L F + Y + R T Sbjct: 183 SRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRRKADSATT 242 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S R+ ++ + + + + +L + RE+ R++ + Sbjct: 243 SFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYSRYMSFNH 302 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 303 P-YSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP G + Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNPQFDGYKC 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKAC-HH 469 DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D KA Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDTAKARLQE 481 Query: 470 TLNQYYA 476 L+Q + Sbjct: 482 ALSQMWQ 488 >gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus] gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus] gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus] gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus] gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus] gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus] gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus] gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus] Length = 592 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 197/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 82 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +ALI + ++ V + ++ Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCR 197 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 257 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 316 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 494 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 495 SRLNIERMKQIYQQ 508 >gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio] Length = 606 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + +D + V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + ++++L Y E RD + K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + A + Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GKCSTPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + F P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRINIERMKQIYQQ 490 >gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta] Length = 593 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 83 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 139 AGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.] Length = 434 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 216/472 (45%), Gaps = 44/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV + W R DLR+ DN A SD V+ +FI E + + FIY +L + Sbjct: 3 SVSIFWFRRDLRLDDNVGFLEALK-SDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61 Query: 68 VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + I+ V +++ NR YE RRD+ + Sbjct: 62 MRDRLQNDHTSSLALF----YGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEISSL 117 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + I K+F D V+ ++ + Y VYTP++ ++ + + + + L Sbjct: 118 FEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQHLN 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V S +P + + Y + R+ PA GTS+L Sbjct: 178 NLVENSRLPNLTLSEMGFKTSSLKV-------PDYDVTPTLIDNYEDTRNFPAQDGTSRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E + + +EL+WREF+ ++ YP Sbjct: 231 GPHLRFGTVSVRKMVKKALAENNQV----------FWSELVWREFFMQILYHYPETI-NN 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++I+W + + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K L Sbjct: 280 AFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD + ASN G WQWAA +G D+ PYFRIFNP Q +FD + +I Sbjct: 340 LIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERKYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PE + + YP +VDHK+A L Y A Sbjct: 400 EKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432 >gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio] gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio] Length = 606 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 199/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + +D + V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + ++++L Y E RD + K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + + A + Sbjct: 116 LATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GKCSTPVSDDHDDKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + F P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P ++I+ P + + K + ++YP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRINIERMKQIYQQ 490 >gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana] Length = 556 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 480 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 223/480 (46%), Gaps = 20/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA + KV+ VF P I+ + ++ SL ++Q+ Sbjct: 7 LFWHRRDLRIRDNLGLAAARKRTP-KVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + E + + +++NR E RD + L+ R Sbjct: 66 NYQSAGSELLILK----GKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121 Query: 131 VICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180 I S L PP ++ A + YKVYTPF + I+ Q + Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDIPAI 239 ++ + Y ++ + P A + + Y +QRD P+I Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFY 298 GTS LS L G L R W + + + +W EL WRE + + + Sbjct: 242 AGTSTLSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQELAWRE-FYQSVMYT 300 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+ + W+ D L QAW +G TG+PI+DAAMRQLN GWMHNR RMI A Sbjct: 301 FPNLAEGPYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDL++DWR GE+YFM L DGDL++NNGGWQW+AS+G D P RIFNP Q K++ Sbjct: 361 SFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKY 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP+ +IR WLPE+ ++ T + + + YP +VDHK+ +Y A K Sbjct: 420 DPEAEYIREWLPEIRHLDTGALVS-GKIDSNDLEGTGYPCKVVDHKEQQAIFKERYKAQK 478 >gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1] Length = 433 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 155/467 (33%), Positives = 223/467 (47%), Gaps = 45/467 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN LY A NS KVI +FI + + + FIY L ++ Sbjct: 7 LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +E L+ + ++ ++ N YE + RDK + + L + Sbjct: 66 TLQSHDASILVKH----GKPLEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELLASK 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I K++ D V+ ++ Y +YTP+ K + L + D S+ + Sbjct: 122 NIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNYAKK 181 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 N P D F A + + + Y + R+ PAI+GTS+LSP+L Sbjct: 182 SFNFPSLKDIGFTASS---------IKVLPYTMAENMIDNYEDTRNFPAIEGTSRLSPHL 232 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R+C + ++ +L EL+WREF+ ++ +P + F Sbjct: 233 RFGTISVRKCVQNGLQSENNV----------FLKELVWREFFMQILWHFP-KSVTNNFKS 281 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + I+W D +AW +G TG+P++DA MR+LN G+MHNR+RMITASFL K LL+DW Sbjct: 282 KYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHLLIDW 341 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GE YF +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD T+I W Sbjct: 342 KWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYINKW- 400 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + L YP PIV+HK A L+ Y + Sbjct: 401 ------------------ASDYQELTYPSPIVEHKFARERCLSTYKS 429 >gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1] Length = 476 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 212/472 (44%), Gaps = 33/472 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR++DN AL AA + +V+ V+I Q Q G + +L Sbjct: 6 PTVIVWFRRDLRLSDNPALLAA--TAMGQVLPVYIHENNQ--QEGGGGAWRWGLQQALAA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L K C D L T +++NR Y ++RD+ +++ L Sbjct: 62 LNADLQGKL-------CCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSL 114 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R + + L P +L YKV+TP+ + P + Sbjct: 115 IERGLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPTVTWAT 174 Query: 187 PVTPSNIPRF---------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + ++ +GE+ A F + Y + RD P Sbjct: 175 LPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFP 234 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS+LS L G+LSP Q W L+ D + +EL WREF + + Sbjct: 235 GRDCTSRLSTALQYGLLSPNQVWYGLEHAKADE-----HSVDKFRSELAWREFAYYQLFH 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +PS+ F P + W +D L W+ G TG PI+DA MR+L G MHNR+RM+ Sbjct: 290 FPSLPHKN-FQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRMLV 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK+LL+DWR G +F L+D DLA N+ WQW A G D+ PYFRIFNP QG++ Sbjct: 349 GSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQGEK 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463 FD GT+ R ++PEL N+P QY+ P L +YP P+VD Sbjct: 409 FDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460 >gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti] gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti] Length = 820 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 117/493 (23%), Positives = 189/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ VF+ P + + F+ L + + Sbjct: 47 VHWFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 105 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + + L + T L + E RD + + + Sbjct: 106 NLRKLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + +A+I ++ + + T Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 222 PQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAWVASFGRPKMT 281 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 282 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLHGQLLWREFFYCA 339 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 340 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 398 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 399 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVK 457 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + K + YPLP+V+H A Sbjct: 458 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCIIGKEYPLPMVNHAIAS 517 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 518 RANMERIKQVYQQ 530 >gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis] gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis] Length = 570 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 32/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL AA +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDSSLRKLNSRLFVVR----GQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ K + + ++S ++ + +A+I + + V Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSV 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228 ++ Y +++ ++P GE AL L + + K + Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGPAIWPGGETEALARLDRHLERKAW 234 Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + + LSPYL G LS R + RL+E + + S + Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPPL-SLYGQ 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL W G + F LLD D + N G W W + + Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +++ +LP L P++YI+ P S + K + ++YP Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H +A + + +Q Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494 >gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823] Length = 434 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 219/471 (46%), Gaps = 44/471 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W R DLRI+DN LY A S KV A+FI + + ++ FI+ ++ +Q Sbjct: 5 ALFWHRRDLRISDNAGLYKALK-SGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ + G + E + + + +F NR YE N ++RDK + L Sbjct: 64 QAYQKLGASLWIFH----GNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTK 119 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D V+ I+ Y V+TP+ K + L L+ PV Sbjct: 120 IGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQLNDFYLQPYPVEKYI----- 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 N+ + + Q + + + Y RD PAI GT++LS + Sbjct: 175 --HNLNPNNHVELPTLSELGFSEIQTQHFPSAEIPQTIIQSYENTRDFPAINGTTRLSIH 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +S R+ + + + NELIWR+ + ++ F+ + + F Sbjct: 233 LRFGTISIRELAKQALKTN-----------EKYFNELIWRD-FYQMILFFYPRTIEETFR 280 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +IEW D L QAW G TG+P++DA MR+LN G MHNR+RM+ ASF K L D Sbjct: 281 KEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCKHLFHD 340 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W++GE YF +LLD +LASN GGWQWAA G D+ PYFRIFNPT Q +RFDPQ +I+ W Sbjct: 341 WKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFEYIKKW 400 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PE + +YP PIV+HK A TL Y K Sbjct: 401 VPEFG-------------------TSDYPQPIVEHKWARERTLENYKKVLK 432 >gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus] Length = 588 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + L+ + ++ + + + + Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM 44233] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 217/474 (45%), Gaps = 24/474 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R DLR+ D+ AL AA + + +V+ VF+A G S R+ Sbjct: 3 STSLLWFRRDLRLGDHPALAAAA-DHNHRVLGVFVADDVPLDASG-SPRR--------AV 52 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L+ L + + Y RRD+ +++ L Sbjct: 53 LARTLAALAQAMDGRLLIAHGRPRSVLPRLARAVDADVVHVSADYGPYGRRRDEQVQRAL 112 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 Q + S + PG + + Y V+TPF + + + RS G Sbjct: 113 QDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARSGSGVDWVDPG 172 Query: 187 PVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V + P+ + A + +GEQ AL R F E + Y RD P GTS Sbjct: 173 EVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPGTSH 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VC 302 +S YL G + PR DL + +GA S+ EL WREFY + P Sbjct: 233 MSVYLKWGSIHPRTLLA-------DLAGRRSTGAASYRRELAWREFYADSVFHLPESVWT 285 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P I +AW+ G TG+P IDA MRQL GWMHNRLRM TASFL+ Sbjct: 286 SVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATASFLI 345 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL + W+ G E+F+ L+DGD ASNN GWQW A +G + P+FRIFNP QG++FDP G Sbjct: 346 KDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKFDPSG 405 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 F+R ++PEL +VP + +H P + YP PIVDH L ++ Sbjct: 406 DFVRRYIPELRDVPGRKVHRPWEL--DGGVPAGYPEPIVDHADERAEALRRWQQ 457 >gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335] Length = 490 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 131/498 (26%), Positives = 227/498 (45%), Gaps = 34/498 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 M + L+WLRNDLR+ D++ L+ A A +I V+ P Q++ + ++ F+ Sbjct: 1 MRI-LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ L +G Q E + + + ++++ + E+ ++ Sbjct: 59 IETVAALKAELRSRGSNLVILQ----GKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQ 114 Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 LE L + + + + L P + Q+ +V+T FRKA+ +N P Sbjct: 115 RLETVLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEK 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234 L + P +P D + + + + Y++ R Sbjct: 175 LPSLPNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKE 234 Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + +S+ SP+L+ G LSPR+ + ++ + + + EL+WR+++ Sbjct: 235 TRNGMLGADYSSKFSPWLANGSLSPRRVYEEVQRYERERKKNN--STYWMIFELMWRDYF 292 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R + Y K I IEW +D W++G TG+P+IDA MR+L G+M N Sbjct: 293 RFVCVKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSN 351 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 352 RGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNI 410 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465 Q K +D +G +++HWLPEL +P + +H P + L ++YP P+VD +K Sbjct: 411 PKQSKDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQK 470 Query: 466 ACHHTLNQY---YAAKKQ 480 + +Y + KK Sbjct: 471 SVSVNERRYEDAWQQKKH 488 >gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 457 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 207/475 (43%), Gaps = 24/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +D +V+ +F+ + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFVRDTGIHAAGFDAPNRRAFLADCLS 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL +G + Q T++ RR++ L + Sbjct: 60 DLDSSLRHRGGRLVVRDGPVVREVRSV----AAQCGSTEVHVAAGVTGYAHRREERLREG 115 Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + PG++ V+TP+ + + + L + + Sbjct: 116 LRDDGVSLHVHEPVITAVAPGAVTPAGSDHVAVFTPYFRRWSRESPRKPLAAPRTVRV-- 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTS 243 P P P P G + A E R D A TS Sbjct: 174 --PRGVRGEPLPDRADVAGASPGLPAGGETAGRDRFARWSRSGLSRYEDRHDDLADDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP + +R + GA +++ ++ WR+F+ ++A P + Sbjct: 232 RLSPYLHFGALSPLELVHRARAHGG-------PGAEAFVRQVCWRDFHHQVLAARPEASV 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + AW+ G TG+P++DAAMRQL GWMHNR R++ A FL K Sbjct: 285 KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGWMHNRARLLVAGFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG +F+ L+DGD+ +N WQWAA TG D+ P+ R+ NP +Q +RFDP G Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGV 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +V +H P L+YP P+V+ L ++ A+ Sbjct: 404 YVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHAR 454 >gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a] Length = 473 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 146/461 (31%), Positives = 215/461 (46%), Gaps = 13/461 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV LVW R DLR+ DN AL AA ++ V+ V+I P + + A + + SL Sbjct: 4 SVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAA 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +G DS+ L Q +++NR+YE RD +++ L Sbjct: 63 LDADLRTRGSSLVLRS----GDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRML 118 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRL 184 + + I +S + S+L P I Q YKV+TP+ + ++ + + + Sbjct: 119 REQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHAV 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + GE AL L F + Y EQRD+P GTS+ Sbjct: 179 DSLALDDLQLAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSR 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G ++P + + L+ G +L +L WR+F HL+ +P Sbjct: 239 LSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPTD 295 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + L AW++G TG PI+DA +R+L G+MHNR+RMI AS+L K Sbjct: 296 NLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLCKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ + Sbjct: 356 LRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQARY 415 Query: 425 IRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPL-PIVDH 463 I W+PEL +P + AP L + YP P+VD Sbjct: 416 ISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVDL 456 >gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus] gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus] Length = 594 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 82 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +ALI + V + + Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCR 197 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 257 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 316 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 494 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 495 SRLNIERMKQIYQQ 508 >gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3] gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3] Length = 479 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 220/504 (43%), Gaps = 48/504 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACH-----------NSDAKVIAVFIATPEQWR 49 M + S +VW R D VI ++I Sbjct: 1 MPTKS--SPVIVWFRKD------------LRLADNLALLAAVEHGGPVIPIYIRETS--- 43 Query: 50 QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 + Q +++ SL + +L + G ++ E L + + +N Sbjct: 44 SGPLGGAQEWWLHHSLASLSAALEKCGSRLLLRS----GNAEETLRRLIAETGADAVLWN 99 Query: 110 RQYEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-- 166 R+YE + DK +++ L +SF +L P + + Y+VYTPF +AL Sbjct: 100 RRYEPTGMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGS 159 Query: 167 ---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A + + + + ++ GE A L F Sbjct: 160 EEPHTPADAPQSLKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFI 219 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + Y E RD PA TS L+P+L++G +SP W+ K + + Sbjct: 220 DGALKGYEEGRDFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHIASN---DISRFRK 276 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL+WREF HL+ +P K + W D AW +G TG+PI+DA MRQL Sbjct: 277 ELVWREFCYHLLFHFPE-LDEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQL 335 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G MHNR+RMI ASFL+K LL+DWR GE++F L+D D ASN WQW A +G D+ Sbjct: 336 WKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADAS 395 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYP 457 P+FRIFNP +QG++FD +G ++R ++PEL + +YIH P + +L YP Sbjct: 396 PFFRIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYP 455 Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481 LPIVDH KA L Y K + Sbjct: 456 LPIVDHGKARERALAAYAEVKNNA 479 >gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max] gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max] Length = 681 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 216/484 (44%), Gaps = 22/484 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLRI DN AL A V+AVF+ PE+ Q+ ++ SL + Sbjct: 7 SIVWFRRDLRIEDNPALTAGVRA--GAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLH 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL G + + D++ L T+LF+N Y+ + RD ++ L Sbjct: 65 SSLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 121 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I ++ L P + + + + + F + + + LP I Sbjct: 122 QGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 181 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G NA L F + Y + R TS Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSP+L G LS ++ ++ ++ + + + +L + RE+ R++ +P Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 302 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FD Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 P G ++R WLPEL +PT++IH P + + +L NYPLPIV A L Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480 Query: 474 YYAA 477 Sbjct: 481 LSEM 484 >gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa] Length = 594 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 25 SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 83 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + + VT+L + E RD +++ + Sbjct: 84 TSLRKLNSRLFVVR----GQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 139 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +ALI + V + ++ Sbjct: 140 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESCR 199 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 200 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 259 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 260 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 318 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 319 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 377 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 378 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 436 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 437 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 496 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 497 SRLNIERMKQIYQQ 510 >gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis] Length = 570 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 32/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL AA +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDSSLRKLNSRLFVVR----GQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ K + + ++S ++ + +A+I + + V Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPAPSV 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228 ++ Y +++ ++P GE AL L + + K + Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLERKAW 234 Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + + LSPYL G LS R + RL+E + + S + Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPPL-SLYGQ 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL W G + F LLD D + N G W W + + Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G +++ +LP L P++YI+ P S + K + ++YP Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H +A + + +Q Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494 >gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris] gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris] Length = 718 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 126/485 (25%), Positives = 208/485 (42%), Gaps = 25/485 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN A V+ VFI +P++ Q ++ SL+Q Sbjct: 4 SCTVVWFRRDLRLEDNP--ALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSLIQ 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL G+ + D++ L +++ YN Y+ + RD +++ L Sbjct: 62 LDISLRSLGVSLVMINAN---DTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQSL 118 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181 I + L P +L+ + + + + + + + LP Sbjct: 119 VQNGIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLPPRRLTAAP 178 Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P + + G NA L F Y R Sbjct: 179 AGIVHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRHEID 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSP+L G +S R+ ++ ++ D + + ++ + +RE+ R+L Sbjct: 239 GPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYSRYL 298 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + + W D L +AW+QG TG+P++DA MR+L GW+HNR+R Sbjct: 299 CFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHNRVR 357 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ NP + Sbjct: 358 VIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNPQTE 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G + DP G ++R WLPEL +PT++IH P +L NYP P+V+ A Sbjct: 418 GYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAAARE 477 Query: 469 HTLNQ 473 + Sbjct: 478 RLRDA 482 >gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes] Length = 614 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 45 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 517 SRLNIERMKQIYQQ 530 >gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 486 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 26/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D+ L+ A I ++ P S R F+Y SL Sbjct: 5 PINIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKS 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K L+ + + ++++ + + +LF ++ + + + + Sbjct: 64 LDKGLANYNRKVEVF----YGEAMDIFNFLNTHYSIQQLFSYQESGLKKTWQRDKKIRAF 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + N + + +++N + A L Sbjct: 120 CAINNIYWEESQRDGIIRGLKNRDTWNKRWHAAMHTPILKNNYSVSKLNTVEHAYVLPQE 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245 + Y P GE+NA L F +++ + Y P S+L Sbjct: 180 LVAKLENYPKHY--------QPAGEENAWRYLTSFTQKRGFNYHRHISKPTESRIACSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY + G +S +Q ++ + + L L W + + Sbjct: 232 SPYFAWGNISIKQVFHYVGKHPNGTANNRAFSG--MLTRLHWHCHFIQKFEVECTYETL- 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 E + K++ L+AWK G TG+P+IDA MR + GW++ R+R + SFL +L Sbjct: 289 CVNKGYELLAHKKNALFLKAWKTGQTGYPLIDACMRAVEQTGWINFRMRAMVVSFLTLNL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR G + Q LD + + +Q A G + R++NP + DPQG FI Sbjct: 349 DQDWRDGVYHLACQFLDYEPGIHYPQFQMQA--GTTGINTVRLYNPVKNSEEHDPQGVFI 406 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+PEL NVP YIH P + + +YPLPIVD K + ++ + KK Sbjct: 407 KKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDYPLPIVDLKTSAKLARDKIWGHKK 466 Query: 480 QSLL 483 + Sbjct: 467 HPAV 470 >gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 127/498 (25%), Positives = 198/498 (39%), Gaps = 33/498 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---------GISARQSHFI 61 LVW R LR+ DN AL AA S A+V VF+ P R + F+ Sbjct: 16 LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFL 74 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SLL + L G + DD + + + + KL + E + RDK Sbjct: 75 LESLLDLDARLRCLGSRLLVLRA--RDDVSDAVCAALKDWNIGKLCFESDTEPYALARDK 132 Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + I S P I + + Y F + + Sbjct: 133 RVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEEYSVL 192 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEKVYYY 230 P I TG +P+ + + + + + + K K Sbjct: 193 PPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAKFEKP 252 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 T+ LSPYL G LS R ++ +++ + K S +L+WR+F Sbjct: 253 KGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKPPV-SLAGQLLWRDF 311 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ + P ++I W + L AW+ G TG+P IDA M QL GWMH Sbjct: 312 FYTVSLGTPNFDHME-GNPICKQIPWRESEELFVAWRDGRTGYPWIDAIMIQLRKWGWMH 370 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W + + Y RI+ Sbjct: 371 HLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YHRIY 429 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +P GK++DP G +IRH++P L ++P +YI+ P + + + +YP P+VDH Sbjct: 430 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGKDYPKPVVDH 489 Query: 464 KKACHHTLNQYYAAKKQS 481 + A + A + Sbjct: 490 EAASKGCRRRMGEAYASN 507 >gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597] Length = 472 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 225/477 (47%), Gaps = 24/477 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR++D+ AL A + VI VFI G+ A + L + Sbjct: 9 LLWFRRDLRLSDHPALTQAA--ARGPVIPVFIHDDSVA---GLGAAPKWRLGEGLAVFRD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+++G + + E L+ + T +++ R Y+ + + RD ++ L R Sbjct: 64 ALAERGARLILRRGP----AREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADR 119 Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLTG 186 + P + +MY+VY+P+ +A+ V LR+ + Sbjct: 120 GTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLRAPDLSAPSKWPDSE 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++ + + GE A L F +++ Y E+RD+PA TS +S Sbjct: 180 ALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDATSDMS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL++G +SPRQ W+ + GA + E++WREF HLM P + Sbjct: 240 QYLTLGEISPRQLWHAALRGEAEGKS----GAEHFRKEVVWREFAYHLMYHTPRLLDENW 295 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 W +DS ++ WKQG TG +DAAMR++ G MHNR RM+ AS+L K +L Sbjct: 296 REGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVASYLTKHML 355 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 V WRIG+++F L+D D ASN+ GWQW A G D+ PYFR+FNP Q ++FD G ++ Sbjct: 356 VHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFDRDGRYVA 415 Query: 427 HWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 WL E + P+ + P SW + +YP P+VD K+ L Y K Sbjct: 416 RWLAECSRSPSDTALSYFDAIPESWGLSPE--DDYPEPVVDLKEGRRRALAAYEDIK 470 >gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG] Length = 455 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + LPPG ++ + + V+TP+ + ++ L P Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S+ + + GE+ L + ++ + Y + D A GTS+ Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R + ++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHE 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + H AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++DP+G + Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGDY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +RHW+PEL + + +H P + YP P+VD + Sbjct: 405 VRHWVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 451 >gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588] Length = 434 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 164/473 (34%), Positives = 228/473 (48%), Gaps = 48/473 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 +V+L WLR DLR+ D+ ALY A + + V+ VF+ R+ FI+ L Sbjct: 4 TVNLCWLRRDLRLLDHAALYHALKSGN-PVVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ LS+ G + + + Y + V ++F N YE V+RD + K Sbjct: 63 DLQEKLSKLGSTLDVF----YGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118 Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RL 184 L+ + I + D V+ +L Q Y V+TP+ K L L+ PV R Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 IP FQA FP + Y + RDIP I+GTS Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFPP---------VNVKDNILKNYDKTRDIPGIEGTSH 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L +L G +S R R ++L ELIWR+F++ ++ +P V Sbjct: 230 LGVHLRFGTISIRDLAERANTLN-----------ETFLGELIWRDFFQMILWHFPHVVT- 277 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F + I+W + Q W G TG+PI+DA MR+LNT G+MHNR+RMITASFL K Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD DLA+NNG WQWAA G D+ PYFR+FNPT+Q +RFDP + Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PE + Y P+V H++A L Y AA Sbjct: 398 IRKWVPEFEEL-------------------TYVKPMVVHEQARKRVLEVYKAA 431 >gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424] Length = 488 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 129/487 (26%), Positives = 216/487 (44%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++AL A A +I + Q+R ++ F+ S+ Sbjct: 7 LIWFRNDLRLHDHEALNEALQE-KADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL + G Q + +T L+Y+ + E+ +K L+K Sbjct: 66 ADLRQSLQKLGSNLVIRQGL----PELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPV 179 L I L L + + ++ ++ A P+ Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPVLPAPKSLPPL 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-I 236 P + + + S + F GE L+ + +K Y E R+ + Sbjct: 182 PDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKETRNEM 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G LSPR + +++ + + + EL+WR+F+R + A Sbjct: 242 LGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRVKND--STYWLIFELLWRDFFRFICA 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + W +D + W++G TG+P++DA MR+L T G+M NR R Sbjct: 300 KHGNKIFFSQGLQGIDL-PWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNRGRQN 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 359 VASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G ++R+WLPEL VP IH P + L ++YP P+VD K+ Sbjct: 418 DYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKSVKGN 477 Query: 471 LNQYYAA 477 Y+ A Sbjct: 478 EALYHRA 484 >gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter algicola DG893] Length = 507 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 100/480 (20%), Positives = 175/480 (36%), Gaps = 24/480 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW + DLR D++ L AA + + VI +++ + W+ S RQ FI LL Sbjct: 1 MTT-VVWFKRDLRTRDHEPLIAAVNLGE-PVIPIYVVEDDYWQLPDTSERQWAFIRDCLL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L G + L+ V ++F +++ Sbjct: 59 DLDQQLKYAGNRLVVCN----GAVTDVLNQLKANHDVQRVFCHQETGGQWTYDRDRSVI- 113 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + L + +L++ + P Sbjct: 114 --------HWCTENNLEYREWNQFGVVRRLKNRDVWDKAWADLMRRPVLDSPENIPSAHS 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 TP + G +L F + + Y P A++ S+ Sbjct: 166 QATPLEGISPTFTTRDSCGDRQAGGSTKGHKLLDSFLERRCIGYQYNMSSPLSAVKACSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 LSP+++ G +S R+ + + K + L + + S+ + L W + + P + Sbjct: 226 LSPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLHWHCHFIQKLEDEPELE 285 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 DS LQ W++G TG+P++DA MR L GW++ R+R + + Sbjct: 286 FRAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRALQHTGWINFRMRAMLMAVAS 345 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L + WR + Q D + + Q +G + RI+NP +Q ++ DPQG Sbjct: 346 YQLWLHWRDPALHLARQFTDFEPGIHYP--QAQMQSGLTGINALRIYNPVLQSQKLDPQG 403 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR W+PEL VP + IH P Y P+ DH++A + Sbjct: 404 EFIRRWIPELAGVPAEMIHTPWLLTPAQQQRFGGNTYIAPVCDHEQAARSARKAVGDFRN 463 >gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus HTCC2654] gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2654] Length = 475 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 146/485 (30%), Positives = 231/485 (47%), Gaps = 26/485 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S ++W R DLR++D+ AL+AA + VI +FI G+ A + L Sbjct: 4 STVILWFRRDLRLSDHPALWAAANA--GLVIPLFIRDQSV---DGLGAAAKWRLGEGLRV 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L +G+ + ++ + L + T++ ++R Y+ + RD ++ L Sbjct: 59 FGEALEDRGLKLILRR----GNARDVLREVIEETGATEVHWSRLYDPEAIERDTDVKSAL 114 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIR 183 + I +S ++ P ++ YKVY+PF +A+ V L + + Sbjct: 115 KEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDEPLPTPDLTGPESWP 174 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + + GE+ A L F +K+ Y RD+PA TS Sbjct: 175 DSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDLPAEDATS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 ++S YL+ G +SPRQ W GA +L E++WREF HL+ +P + Sbjct: 235 RMSEYLTYGEISPRQLWAAGARAMDAGKA----GAEHYLKEVVWREFAYHLLYHFPQMLT 290 Query: 304 GKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W + ++ ++AWKQG TG P +DAA+R++ G+MHNR RMI AS+L Sbjct: 291 ENWREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRARMIVASYLT 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K ++ WR+G+ +F L D D ASN GWQW A G D+ PYFR+FNP QG++FDP+G Sbjct: 351 KHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQGEKFDPKG 410 Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYA 476 T+ + W+ E P + P SW K + NYP P+V K+ L Y A Sbjct: 411 TYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGREAALAAYEA 468 Query: 477 AKKQS 481 K S Sbjct: 469 RPKAS 473 >gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp. MED152] Length = 434 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 214/472 (45%), Gaps = 45/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V + W R DLR+ DN Y A S+ KV+ +FI E + + FIY +L + Sbjct: 4 TVTVFWFRRDLRLDDNIGFYNALK-SEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L G + + +F NR YE +RD+ +E+ Sbjct: 63 MRGELQDNYGSSIAMFH----GNPESVFSELIKNYTIDAVFTNRDYEPYATKRDESIEQL 118 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I K+F D V+ ++ YKVYTP+ K + + DL+ + L Sbjct: 119 LSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV-LD 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + S +P I L K + + R+ PA TS L Sbjct: 178 NLIQNSRLPNLSLSDIGFTKSNQEITPYTVTPTLIKEYE-------DTRNFPAQDATSHL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E + ELIWREF+ ++ +P + Sbjct: 231 GPHLRFGTVSVRKMVKKAMAE----------SNEVFWQELIWREFFMQILWHFP-HTKDE 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++IEW + +AW +G TG+P++DA MRQLN G+MHNR+RM+ SFL K L Sbjct: 280 AFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD +I Sbjct: 340 LIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIKKFDKDLKYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+ K+ +YP I+DHK A L Y AA Sbjct: 400 KKWV-------------------KDYEKSSYPKEIIDHKSARERCLTVYKAA 432 >gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula] Length = 679 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 217/488 (44%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ SL + Sbjct: 8 CSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L T++F+N Y+ + RD ++ L Sbjct: 66 DSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +S L P + + Q + + F + + LP I Sbjct: 123 AQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDV 182 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F+ + + + G NA L F + Y + R T Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S ++ ++ ++ + + + +L + RE+ R++ + Sbjct: 243 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 303 P-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP +G + Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKC 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469 DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEE 481 Query: 470 TLNQYYAA 477 L Q + Sbjct: 482 ALIQMWQL 489 >gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus] gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus] Length = 582 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 115/494 (23%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A + ++I P + + F+ SL + Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 73 NSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ + +A+I + + + ++ Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL E + + S +L+WREF+ Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYGQLLWREFFYT 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 308 AATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G F LLD D + N G W W + + +F + P Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +++ +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 486 SRLNIERMKQIYQQ 499 >gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708] Length = 479 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 233/478 (48%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S +K++ VF P ++ + ++ L ++K Sbjct: 6 LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +Q G +D+ I + + +V +F+N E RD + L+ + Sbjct: 65 QYTQAGSQLVIL----YDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREK 120 Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + P IL+ + Y VYTPF K + +L Sbjct: 121 GIQTLNQNWDQLLHSPDEILSGSKTPYTVYTPFWKNWSSKPKANPVATLKNSEGLTAAEQ 180 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + P + + GE A L F + Y EQR+ P + G Sbjct: 181 EIAKQSGAINLPSAQDLGFIWDGELIIEPGEAVAKARLETFTTSAINEYQEQRNFPTVHG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300 TSQLS L GV+ R W KE + + +W E WREFY+H M +P+ Sbjct: 241 TSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFAWREFYQHAMYHFPA 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + +K W + QAW +G TG+PI+DAAMRQLN IGWMHNR RMI ASF Sbjct: 301 LANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P RIFNP Q ++FD Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-LRIFNPASQAQKFDI 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+ EL +V T+Y+ + + ++ YP PIVDHKK Y K Sbjct: 419 DGEYIRQWVRELKSVDTEYLVS-GNITPLERRAVGYPTPIVDHKKQQGLFKQLYQEQK 475 >gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680] Length = 457 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 126/474 (26%), Positives = 212/474 (44%), Gaps = 22/474 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L AA + +V+ +F+ + + F+ L Sbjct: 1 MNVSVVLFTSDLRLHDHPPLRAAL-DGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D ++ + + ++ RR++ L Sbjct: 60 DLDAGLRERGGRLVLRS----GDVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRSA 115 Query: 127 LQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ ++V+ PG++ + + V+TP+ + + ++ +L P Sbjct: 116 LEADGRRLHVHETVITAVAPGAVTPSSSDHFAVFTPYFRHWEREHLR---DALGAPRGVR 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S + GE+ L + + + Y ++ D A TS Sbjct: 173 VPESVGSERLPTRTELSGLSQGLAAGGEEEGRKRLMAWLRGGITAYEDRHDDLAGDATSH 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 233 LSPHLHFGTLSPVELVHRARR-------TGGPGAEAFVRQLAWRDFHYQVLAARPDAATA 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 ++AW+ G TG+P+IDAAMRQL GWMHNR R++TASFL K Sbjct: 286 DYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRLLTASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P R+ NP Q KR+DP G + Sbjct: 346 LYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGAY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL + +H P + + +YP PIV+ L ++ A+ Sbjct: 405 VRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVELADG----LARFRHAR 454 >gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens] gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens] Length = 614 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 45 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 219 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 517 SRLNIERMKQIYQQ 530 >gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus] Length = 593 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 83 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca] Length = 581 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 12 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 71 TSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 306 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 423 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 484 SRLNIERMKQIYQQ 497 >gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 504 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 109/476 (22%), Positives = 175/476 (36%), Gaps = 33/476 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW + DLR D++ L A V+ ++I P+ W Q SARQ F +L Sbjct: 7 PLQLVWFKRDLRSVDHRPLALALER--GPVLPLYIVEPQFWLQPDASARQWAFCREALEA 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ LS G D++E L+ L+ V L+ + + K Sbjct: 65 LQERLSALGQPLVVR----VGDAVEVLERARLRLGVAALWSHEETGNAFTYARDRRVKAW 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + L + P + Sbjct: 121 ARSHGIPWRECPQFGVIRGLRRREGWATRWQERMATPLTPEPLALPPLPAIQPGGLPSAS 180 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 G A +L+ F + +V Y P A G S+L Sbjct: 181 DLGLTADPCPCR--------QRGGRPQAETVLQDFLQRRVQRYCGSISSPLTAFDGCSRL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G LS R+ G ++ + L W + + P+ + Sbjct: 233 SPYLTWGCLSLREVVQ-------ASASLTCRGVRNFRSRLHWHCHFIQKLESEPA-IEHR 284 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P+ I QAW +G TG P +DA MR L GW++ R+R + S L Sbjct: 285 DFHPFMRDIRVWDA-ERYQAWAEGRTGLPFVDACMRALIAHGWINFRMRAMLMSVATYHL 343 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR + +D + + Q +G+ S+ RI+NP QG DP+G FI Sbjct: 344 WLPWRDTGLHLARLFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGLDHDPKGVFI 401 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W PEL + P ++H P ++P PIVD +A ++ +A ++ + Sbjct: 402 RRWCPELAHRPDVWLHEPWRG------GGDHPAPIVDPDQAAREARDRIWAIRRAA 451 >gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061] Length = 477 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 162/488 (33%), Positives = 244/488 (50%), Gaps = 25/488 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + ++W R D+R+ D+ AL A + K++A++ P + + + HF + Sbjct: 1 MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHF-FQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L K + + DD + + +F+N RRDK + Sbjct: 59 NLAHFVKEARESQVYVHLLH----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114 Query: 124 EKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLP 178 L+ + I S L IL Y+V+TP+ ++ + Q D Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P++ + + IG A++ L +F ++++ Y E+RDIP+ Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + GTS+LS +L G +S R ++ + + G +++ EL WR+FY + A Y Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFH----AIYEEALYEDEGRETFIKELAWRDFYHMIYAHY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + K + ++WN+D L +AW +G TGFP++DA MRQLN GWMHNRLRM+TA Sbjct: 291 PEM-KEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KD L+DWR GE YF +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472 DP G IR ++PEL V ++IH P L YPLP VDH++ ++ Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469 Query: 473 QYYAAKKQ 480 + AK+Q Sbjct: 470 LFEEAKQQ 477 >gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822] Length = 495 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 119/490 (24%), Positives = 213/490 (43%), Gaps = 30/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ L A A++I + Q+R+ ++ F+ SL Sbjct: 7 LIWYRNDLRLHDHEPLNKALKE-KAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL ++G + + + + ++T ++Y+++ E+ +K LE Sbjct: 66 ADLKKSLQERGSDLIIRKGL----PEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALES 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + L L + + ++ D ++ Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPL 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRD-I 236 + +P + + + K + Y E R+ + Sbjct: 182 PAIEIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKETRNGM 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G +SPR + +++ + + + EL+WR+++R + A Sbjct: 242 LGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQRVKND--STYWLIFELLWRDYFRFICA 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + W +D Q W++G TG+P++DA MR+L G+M NR R Sbjct: 300 KHGNKIFYPSGLQGLDL-PWKEDWQRFQLWQEGKTGYPLVDANMRELAATGFMSNRGRQN 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 359 VASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP G ++RHWLPEL VP IH P + L ++YP P+VD K+ Sbjct: 418 DYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVDFFKSIKTN 477 Query: 471 LNQYYAAKKQ 480 Y+ +++ Sbjct: 478 -EAIYSTREK 486 >gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca] Length = 673 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 131/493 (26%), Positives = 221/493 (44%), Gaps = 25/493 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL A V+A+FI PE+ + ++ SL + Sbjct: 7 CSVVWFRRDLRVEDNPALLAGVRAGG--VVALFIWAPEEEGPYYPGRVSRWWLKHSLAHL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L CL T+LF+N Y+ + RD ++ L Sbjct: 65 DSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLS 121 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ L P + + + + + F + + + LP I Sbjct: 122 ANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRIISGDA 181 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 F+ + + + G +A + F + Y R T Sbjct: 182 SRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTT 241 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ + Sbjct: 242 SLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W + + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 302 P-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP +G + Sbjct: 361 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKC 420 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469 DP G ++R WLPEL+ +PT +IH P + + +L NYPLPIV + A Sbjct: 421 DPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQE 480 Query: 470 TLNQYYAAKKQSL 482 L + + ++ + Sbjct: 481 ALTEMWQHERAAA 493 >gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus] gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus] Length = 828 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 114/477 (23%), Positives = 182/477 (38%), Gaps = 20/477 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A + VF+ P + + F+ L + + Sbjct: 51 VHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 109 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L Q + + L + T L + E RD + + + Sbjct: 110 NLRQLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 165 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I S L + T + I + A + PAI L Sbjct: 166 NIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPE--PAITLAAIGRA 223 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + +G + + + R + + LSPYL Sbjct: 224 VTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEAL--ARLERHLGTQTGLSPYLR 281 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LS R + +L + + + S +L WREF+ P+ P Sbjct: 282 FGCLSTRLFYYQLTDLYKKIKKAY--PPLSLHGQLFWREFFYCAATKNPNFDKM-AGNPI 338 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369 +I W++++ L W G TGFP IDA M QL GW+H+ R A FL + DL + W Sbjct: 339 CVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISW 398 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + F LLD D + N G W W + + +F + P G++ DP G +IR +L Sbjct: 399 EEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKADPNGDYIRRYL 457 Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P L N PT+YIH P + + + + NYPLP+V+H A + + +Q Sbjct: 458 PVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQVYQQ 514 >gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis familiaris] Length = 593 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 83 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 139 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 199 ADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca] Length = 580 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 12 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 71 TSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 306 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 423 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP L P++YI+ P + + K + ++YP PIV+H + Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 484 SRLNIERMKQIYQQ 497 >gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307] Length = 503 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 107/474 (22%), Positives = 179/474 (37%), Gaps = 32/474 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW + DLR D+ AL A + V+ +FI P W Q SARQ F SL + Sbjct: 23 PLQVVWFKRDLRTIDHGALSQASRS--GPVLPLFIVEPMFWAQPDASARQWEFCAESLAE 80 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++L+ G +++ L + Q+ + +L+ +++ + R L R Sbjct: 81 LREALAALGQPLVIRT----GEALAVLKALHRQRGIAQLWSHQETGNDFTYRRDRLVARW 136 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++ N R+++ + P + Sbjct: 137 CREQSIRWHQPRSFGVIRAMGNRDGWAPAWELLMRQSVCADPAPLTRLGGIDPGGIPSAD 196 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245 P G +L F + Y ++ P A + S+L Sbjct: 197 DLKL--------PSDPCPGRQRGGRSQGAALLESFLHHRGRRYAKELSSPLTAFESCSRL 248 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L+ G LS R+ + +G +++ L W + + PS+ Sbjct: 249 SAHLTFGTLSMREIVQTAR---------LNNGPKAFVERLHWHCHFIQKLESQPSLEYQN 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + D L W +G TG+P +DA MR L GW++ R+R + S L Sbjct: 300 AHRAYDGLRAD--DPQRLALWIEGRTGWPFVDACMRALRHHGWINFRMRAMLMSVASYQL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WR E +D + + Q +G + RI+NP QG DP+G FI Sbjct: 358 WLPWRQSGEALARLFVDYEPGIHWN--QCQMQSGTSGINTVRIYNPIKQGLDHDPEGAFI 415 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP IH P YP P+VD++ A +Q + +K Sbjct: 416 RQWLPELQGVPVSGIHTPWLL---AQPPETYPHPVVDYEAAARQARDQVWGLRK 466 >gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58] Length = 458 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 229/475 (48%), Gaps = 30/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR++D AL AA S+ V+ V++ + RQ + +++ SL + + Sbjct: 6 LLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLASLDR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +KG + S + L + + ++ YE +K + K L Sbjct: 64 ALREKGSRLTLRR----GKSADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKALDLC 119 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRLT 185 + D +LLPPG++ + +YK+YTPF +A+++ + A + T Sbjct: 120 L----HDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTPATIDAPESWPET 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + + GE A + ++V Y R++P+++GTS+L Sbjct: 176 DRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVA-AFIDEVGDYPTGRNLPSVEGTSRL 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SP W+R+ D +L ELIWR++ + P+ Sbjct: 235 SPHLHYGEVSPAYVWHRVTASNADA--------EIFLKELIWRDYTHTQICEMPAYGSKN 286 Query: 306 PFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + AWK+G TG+PI+DA MRQL T GWMHNR+RMI ASFL+K Sbjct: 287 ARDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFLIK 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR G ++F L+D D A+N+ WQW A +G D+ + RI P Q ++FD G Sbjct: 347 HLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLTQSEKFDA-GD 405 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR W+PEL + + IH P + + D +YP I+ H+ L Y K Sbjct: 406 YIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAAYRRIK 457 >gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus] Length = 569 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 197/493 (39%), Gaps = 31/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 1 VHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDT 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129 SL + + + + VT+L + E RD +++ + Sbjct: 60 SLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + + L I+ Q + +ALI + ++ V + R+ Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 Y +++ ++ GE AL L K + K + +R Sbjct: 176 EIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMN 235 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 236 ANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTA 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ R Sbjct: 295 ATNNPRFDRVE-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 353 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 354 HAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVG 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 413 FGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETS 472 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 473 RLNIERMKQIYQQ 485 >gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2 Length = 582 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 115/494 (23%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A + ++I P + + F+ SL + Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 73 NSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ + +A+I + + + ++ Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL E + + S +L+WREF+ Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYGQLLWREFFYT 307 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 308 AATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G F LLD D + N G W W + + +F + P Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 425 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +++ +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 486 SRLNIERMKQIYQQ 499 >gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 466 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 217/474 (45%), Gaps = 32/474 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R+DLR+ DN AL+AA S VI +++ + +++ SL ++ Sbjct: 11 AVVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARWWLHHSLTSLE 69 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +S+ + G + L + +F+NR+Y E R D+ ++ + Sbjct: 70 ESIGRAGSALAIRTGP----AERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAARD 125 Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLT 185 + SF ++L P ++ + + VYTPF +A + P L Sbjct: 126 TGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLARPEPRRPLPALRRLRPGPSLP 185 Query: 186 GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + GE+ A L F E + Y +RD+P I TS+ Sbjct: 186 SLELDELKLLPVHPDWADGLRETWKPGERAAHRELSAFLGEGLARYRAERDVPGIAATSR 245 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP L G LSP Q W+ + GA ++L+EL WREF H P++ Sbjct: 246 LSPRLRWGELSPFQVWHATAAARDRSTAE---GAATFLSELGWREFAYHTYFERPALATV 302 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + L+AW+QG TG P++DA MR+L G MHNR+RM+ ASFL K+ Sbjct: 303 NIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHNRVRMVAASFLTKN 362 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+FNP +Q ++FDP G + Sbjct: 363 LLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNPEVQREKFDPHGDY 422 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PE + +YP P+VD + L + K Sbjct: 423 VRRWVPE------------WD-------TADYPEPLVDLAETRRAALAAWETVK 457 >gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis] Length = 557 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 122/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA ++ V V+I P + F+ SL + Sbjct: 3 SVHWFRKGLRLHDNPALSAALRDA-TSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + V++L + E RD ++ K + Sbjct: 62 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKE 117 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ + +A+I + + V ++ Sbjct: 118 AGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEACR 177 Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y ++D ++P GE AL L + + K + +R Sbjct: 178 AEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYERPRM 237 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RLKE + + S +L+WREF+ Sbjct: 238 NANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPL-SLYGQLLWREFFYT 296 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 297 AATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 355 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL W G + F LLD D + N G W W + + +F + P Sbjct: 356 RHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 414 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G ++R +LP L P++YI+ P S + K + ++YP PIV+H +A Sbjct: 415 GFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEA 474 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 475 SRMNIERMKQTYQQ 488 >gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC 19865] Length = 472 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 155/479 (32%), Positives = 219/479 (45%), Gaps = 15/479 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ DN AL AA A I ++I P + + A + + SL Sbjct: 1 MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L G DS + LD Q +++NR+YE RD +++ Sbjct: 60 ALDAALRALGSGLVIR----AGDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRS 115 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPA 181 L+ R I ++ L + P + YKV+TP+ + + L A RSLP Sbjct: 116 LRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALP 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L + Q + GE A +L F + Y E RD P G Sbjct: 176 ATLKSAALETLGLVPKLDWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TSQLSP+L G ++P + + L+ G ++ +L WR+F HL+ +P Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLEANRNARNSAEIDG---YIRQLGWRDFAYHLLHHFPDT 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + D LQAW++G TG PI+DA MRQL GWMHNR+RMI AS L Sbjct: 293 TNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASLL 352 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L + W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 353 CKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 412 Query: 422 GTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 +I W+PEL + + AP S L + YP PI+ + L Y + Sbjct: 413 AAYITRWVPELGKLAVKERFAPWLSPLSLARFAPKYPRTPIIGLAEGRDAALAAYAKTR 471 >gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii] Length = 614 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 45 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 104 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 338 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 339 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 456 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 517 SRLNIERMKQIYQQ 530 >gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana With Amppnp Bound Length = 509 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488 Query: 472 NQYYAA 477 +Q + Sbjct: 489 SQMWQL 494 >gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio] Length = 545 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 123/505 (24%), Positives = 196/505 (38%), Gaps = 34/505 (6%) Query: 2 KATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 T MS + + W R LR+ DN AL AA + + +F+ P + I + F Sbjct: 22 PKATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRF 80 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L + SL + + E L Q ++T+L + E RD Sbjct: 81 LIEALKDLDSSLKKLNSRLFVVR----GSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRD 136 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-----------FRKALIQNL 169 K + K + + + S L + T K I Sbjct: 137 KEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAP 196 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----LHILRKFCK 224 D+R + P ++ P G + + + Sbjct: 197 TNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNW 256 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + I T+ LSPY+ G LS R W RL + + S + Sbjct: 257 VCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVY--RGKTHSDPPVSLHGQ 314 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P+ + +++W+ + L AW++ TGFP IDA M QL Sbjct: 315 LLWREFFYTTAVGIPNFNKME-GNSACVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLR 373 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL + W G++ F LLD D + N G WQW +++ Sbjct: 374 QEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS-TFFH 432 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 YFR+++P GK+ D G +I+ +LP L PT+YI+ P + +YP Sbjct: 433 QYFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYP 492 Query: 458 LPIVDHKKACHHTLNQYYAAK-KQS 481 PIVDH+ + + AA K+S Sbjct: 493 RPIVDHEVVHKKNILRMKAAYAKRS 517 >gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4] Length = 445 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 213/469 (45%), Gaps = 31/469 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+ D+ AL+ A +S ++A+++ + + F+ SL ++ K+ Sbjct: 2 LWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLE--PAGSPRIAFLLNSLRELDKA 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 LS + D + + + + R + + RD + + L Sbjct: 59 LSGR---LMVR----CGDPVREVVAAAREIRAAAVHVSADTAPYGRERDDAVAEALAEHR 111 Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I S + PG + Y+V+TPF +A Q+ + + + Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQHGWPRPADTNVSIVDWVKPASSE 171 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 GE+ AL ++F + + Y +RD P GT++LSPYL Sbjct: 172 PLPEPPEVECELPP-----AGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSPYLR 226 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + PR DL GA + +EL WREF+ ++ P + Sbjct: 227 WGAIHPRTMLA-------DLAGNRSEGAQALRSELCWREFHADVLWHRPETARRNYDQRF 279 Query: 311 --TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + W++G TG+PI+DA MRQL GWMHNR+RMI ASFLVKDL + Sbjct: 280 DGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKDLHLP 339 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G +FM L+DGDLASN WQW A +G D+ PYFRIFNPT QG++FDP+G ++R + Sbjct: 340 WWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDYVRRY 399 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +PEL V + +H + YP PIVDH + L +Y A Sbjct: 400 VPELRGVAGKAVH------VLKERPEGYPQPIVDHAEERQVALQRYGAI 442 >gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1] Length = 395 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 206/395 (52%), Positives = 273/395 (69%), Gaps = 3/395 (0%) Query: 85 SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144 +F S+E + C + VT LFYN QYE+NE RD +E+ L++ +C+ FDDSV+LPP Sbjct: 2 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV-VCEGFDDSVILPP 60 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 G+++ +MYKV+TPF+ A ++ L + + P +R +G + PS Sbjct: 61 GAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFD 120 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL Sbjct: 121 TAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLL 180 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 E L WLNELIWREFYRHL+ ++PS+C +PFI WT++++W + LQ Sbjct: 181 AEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQ 238 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGD Sbjct: 239 AWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGD 298 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 LA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P Sbjct: 299 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPW 358 Query: 445 SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W K ++L+YP PIV+HK+A TL Y AA+K Sbjct: 359 KWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393 >gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis] Length = 655 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 212/481 (44%), Gaps = 24/481 (4%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS + +VW R DLR+ DN AL A VI ++I +PE+ Q+ ++ S Sbjct: 1 MSTNCSIVWFRRDLRVEDNPALAAGVRA--GAVIVLYIWSPEEEGQYYPGRVSRWWLKQS 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL G + + +SI + T+LFYN Y+ + RD L+ Sbjct: 59 LAHLDSSLRNLGARLITKRST---NSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLK 115 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSLP 178 + L R I +SF+ +L P + + + + + + + + Sbjct: 116 QDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIV 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + + + G +A L F + Y R Sbjct: 176 AGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKAD 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSP+L G LS ++ ++ L+ + + +L + RE+ R+L Sbjct: 236 SATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYL 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +PS KP + W DS ++W+QG TG+P++DA MR+L GW+H+R+R Sbjct: 296 SFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIR 354 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++ +SF VK L + WR G +YF LLD DL + GWQ+ + D RI NP + Sbjct: 355 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFE 414 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G +FDP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 415 GYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKE 474 Query: 469 H 469 Sbjct: 475 R 475 >gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 469 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 150/478 (31%), Positives = 239/478 (50%), Gaps = 28/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTENAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +SF +++L P ++ N Q +++++ + +A+ +++ + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLAELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LNQRN-LRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+ EL +V T +IH P + NYPLPI+ H++ L + + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRDRALRAWKEIR 467 >gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens] Length = 589 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 20 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 79 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 134 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I+ Q + +A+I + V + ++ Sbjct: 135 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 194 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 195 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 254 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 255 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 313 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 314 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 372 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 373 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 431 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 432 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 491 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 492 SRLNIERMKQIYQQ 505 >gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109] Length = 477 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 159/481 (33%), Positives = 218/481 (45%), Gaps = 24/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ----HGISARQSHFIYASLL 66 L W R DLR+ DN L AA S A V V++ P+ ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIESLV 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ + G + D + L Q + ++R E RD+ + K+ Sbjct: 66 ELQQRWREAGSRLLVVK----GDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKK 121 Query: 127 LQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 LQ D G + + A + V A + Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTGLVD 181 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + +L + + + I P P GE AL L FC + Y R+ P Sbjct: 182 LDPAQLPALESLEALRESHGFKGAEICPCRP-GEAAALAQLNSFCDGPLLAYEPDRNFPG 240 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAF 297 GTS LS LS+G LSPRQ W ++ + W EL WREFY+ + Sbjct: 241 TAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQALFH 300 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR RMI Sbjct: 301 FPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRMIV 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 360 ASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD G +IR W+PEL +V T+ + S +YP P+VDHKK Y Sbjct: 419 FDSAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKKQQARFKALYATL 475 Query: 478 K 478 + Sbjct: 476 R 476 >gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B] Length = 483 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 101/476 (21%), Positives = 170/476 (35%), Gaps = 19/476 (3%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + DLR+ DN AL AA +++ ++ +++ P R R HFI SL + Sbjct: 1 MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 LS + + D+ E + ++ + + + Sbjct: 60 LSPHDTLLHVLEA----DAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSEFAQSQ 115 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + N + + + Sbjct: 116 DIDWLEYPTNGVQRGRRNRKGWSRAWHQQMSAQ-----PDSPRLNALPGRTPALPEALSG 170 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYL 249 + R GE+ A L F + +V Y P + S+LSPY+ Sbjct: 171 RVCRRLAQWETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASRNSCSRLSPYI 230 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G LS RQ + L++ + ++ + L W + + +P Sbjct: 231 AWGNLSIRQVYQALQQAREKGQ--WRRQLAAFESRLHWHCHFIQKFEMECRMEF-EPINR 287 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 D L++AW +G TG+P+IDAAMR L G+++ R R + SFL L DW Sbjct: 288 GYIPHRTEADPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRAMLTSFLCHYLAQDW 347 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R G + S LD + + Q G + RI+NP Q DP G FI W+ Sbjct: 348 RQGAAWLGSLFLDFEPGIHYA--QMQMQAGVTGINTIRIYNPVKQSMDHDPDGDFIAQWV 405 Query: 430 PELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 PEL +P H P + S +YP P+V + + ++ ++ KK + Sbjct: 406 PELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDRLWSLKKDPTI 461 >gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus M045] Length = 468 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 207/484 (42%), Gaps = 29/484 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLR+ D+ L AA + A V+ +F+ + F+ L Sbjct: 1 MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFVRDRAVDAAGFAVPNRLAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D +E + + ++ + RR+ L Sbjct: 60 DLDAGLRERGGRLVVRS----GDLVEEVCRVAAEADAGEVHMASDVSAHAHRREDRLRTA 115 Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIR 183 L+ + + PGS+ + V+TP+ + + ++ VP Sbjct: 116 LEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPRRVPVPE 175 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--------YVEQRD 235 G P + D G LR + Y ++ D Sbjct: 176 GIGSEEPPDRRELSDLSPGLARGGEREGRARLAAWLRGGSGDGKGAGVVGDVGEYEDRHD 235 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 A TS+LSP+L G LSP + + GA +++ +L WR+F+R ++ Sbjct: 236 DLAGDATSRLSPHLHFGTLSPVEVVR-------EAGGLGGPGAEAFVRQLAWRDFHRQVL 288 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P+ +QAW++G TG+P++DAAMRQL GWMHNR R+ Sbjct: 289 AARPAAAHEDYRTRHDRWRTERAAREEVQAWREGRTGYPVVDAAMRQLRHEGWMHNRGRL 348 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 +TASFL K L VDWR+G +F+ L+DGDLA+N WQW A TG DS P R+ NP +QG Sbjct: 349 LTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTGTDSRP-NRVLNPVVQG 407 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474 +RFDP+G ++R W+PEL VP +H P + + Y +VD + L ++ Sbjct: 408 RRFDPEGAYVRRWVPELAEVPGAGVHEPWKLRGAAREAARGYAERVVDLAEG----LERF 463 Query: 475 YAAK 478 A+ Sbjct: 464 RRAR 467 >gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis] gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis] Length = 568 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 122/503 (24%), Positives = 202/503 (40%), Gaps = 32/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ ++S + W R LR+ DN AL +A +++ V V+I P + F Sbjct: 1 MEGKPSVS-SVHWFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + SL + + + + V++L + E RD Sbjct: 59 LLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ K + + ++S I+ + +A+I + + V Sbjct: 115 AVIMKLAKEGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSV 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228 ++ Y +++ ++P GE AL L + + K + Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAW 234 Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS + + RL+E + + S + Sbjct: 235 VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPL-SLFGQ 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 294 LLWREFFYTAATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLR 352 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL W G + F LLD D + N G W W + + Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQ 411 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 +F + P G+R DP G FIR +LP L P++YI+ P S + K + ++YP Sbjct: 412 QFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYP 471 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 PIV+H +A + + +Q Sbjct: 472 KPIVNHAEASSMNIERMKQTYQQ 494 >gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4] Length = 477 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 145/443 (32%), Positives = 222/443 (50%), Gaps = 11/443 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVW R DLR+ DN A AA +VI V+I PE+ A + + SL Sbjct: 4 PTALVWFRRDLRLGDNPA-LAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSLAA 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L ++ Q + + L + T +F+NR+YE ++RD+ ++++L Sbjct: 63 LDSGLKKRNSRLIVRQGPSH----KALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQQL 118 Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + KS + +L P I + Y+++TPF K ++ + P + Sbjct: 119 RAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPVNR 178 Query: 187 PVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + Q + GE A F +E + Y ++RD P + GT Sbjct: 179 QLQSEPLSTLGLLPKIPWDQEFYTHWTPGEAGAWRQWECFLEEALGKYHQERDRPDLPGT 238 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP+L G +SPRQ ++ + +D + +G ++L +L WREF HL+ +P Sbjct: 239 SRLSPHLHFGEISPRQIAFQI-QIQMDRRAELTAGGQAYLRQLGWREFAYHLLYHFPETP 297 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +T L AW+QG TG P++DA MR+L GWMHNR+RMI AS L Sbjct: 298 EKPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMHNRVRMIAASLLT 357 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L + W+ GE +F L+D DLASN GWQW A G D+ PYFR+FNP +QGK+FDP+G Sbjct: 358 KNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFNPVLQGKKFDPEG 417 Query: 423 TFIRHWLPELNNVPTQYIHAPHS 445 +++ W+PEL + Q+IH P Sbjct: 418 KYVQQWIPELRKISKQHIHEPWK 440 >gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens] gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens] gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens] gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens] gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct] gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct] Length = 593 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 83 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ Q + +A+I + V + ++ Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 198 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594] Length = 463 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 236/481 (49%), Gaps = 33/481 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWLR DLR+ DN ALY A V+AV++ E+ + H + +++ SL + Sbjct: 5 QIVWLRRDLRMADNPALYHAAKA--GPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLG 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 KS + + D++E L + + NR YE + L + Sbjct: 63 KSFGARNSRIVLRR----GDAVEELKTVANAVGAETVHANRHYEPWWRKAQGELAEE--- 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184 + K +D + L PPG + + YK+YTPF KA++Q + D P Sbjct: 116 -LELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRDEVPEPETLSSPGEWPA 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + N+ + + +GE A L ++V Y + R++P++ TSQ Sbjct: 175 SDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLDW-WSDEVDKYDDGRNMPSVDETSQ 233 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303 +SP+L G +SP Q W+R K++ D G ++ ELIWR++ ++++ +P+ Sbjct: 234 MSPHLHHGEISPVQIWHRFKDKRSD-------GWKTYEKELIWRDYAQNVICQFPAYPKE 286 Query: 304 -----GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + L+ W++G TG+PI+DA MRQL GWMHNR+RMI A Sbjct: 287 SYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIAA 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL+K LL+DWR GE++F L+D D ASN WQW + TG DS + RI P Q ++F Sbjct: 347 SFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSEKF 406 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G +IR ++PEL ++P + IH P K D +YP I+ HK+ L Y K Sbjct: 407 DAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAYSEFK 462 Query: 479 K 479 Sbjct: 463 N 463 >gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa] Length = 676 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 216/488 (44%), Gaps = 25/488 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ SL + Sbjct: 8 CSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHL 65 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + + DS+ L T++F+N Y+ + RD ++ L Sbjct: 66 DSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I +S L P + + Q + + F + + LP I Sbjct: 123 AQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLPPKRIIPGDV 182 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F+ + + + G NA L F + Y + R T Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G +S ++ + ++ + + + +L + RE+ R++ + Sbjct: 243 SFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 303 P-YSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 361 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP +G + Sbjct: 362 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKC 421 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HH 469 DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 422 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEE 481 Query: 470 TLNQYYAA 477 L Q + Sbjct: 482 ALIQMWQL 489 >gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 508 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/488 (19%), Positives = 187/488 (38%), Gaps = 27/488 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +VW + DLR+ D+ AL A + V+ +++ P W +S + F+ SL Sbjct: 1 MTLSVVWFKRDLRLHDHAALTLAA--ARGPVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L+++G + ++ LD+ Q + LF + + + + L R Sbjct: 59 ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAHEETGNDISYQRDLAVGR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + +A + V A PA+ + Sbjct: 115 WCRTHQVGWHESAQFGVVRRLQDRDKWQRHWEAHVAQACLPIPVLAFAACPLTPAVLPSS 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244 G + A+ +L+ F ++ Y P T+ Sbjct: 175 DA--------LGLAPDDPPLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAPTACSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEE---FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSPYL+ G LS R+ + +++ + K+G + + L W + + P++ Sbjct: 227 LSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLESEPAL 286 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E + + A G TG+P++DA + L GW++ R+R + S Sbjct: 287 EYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAMLVSVA 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + WR + Q LD + + Q +G + RI+NP Q DP Sbjct: 347 AYPLWLHWRPVGLWLARQFLDYEPGIHWS--QLQMQSGTTGINVPRIYNPIKQAHDHDPH 404 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475 G F+R WLP + VP ++ P + + + +P+VD ++A ++ + Sbjct: 405 GHFVRRWLPAMRKVPDAWLFEPWRMPAELQARYGVVVGHDIAMPLVDLEQATRLAKDKLF 464 Query: 476 AAKKQSLL 483 + Q + Sbjct: 465 GLRAQPAV 472 >gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans SRS30216] Length = 450 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 24/471 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++D+ +D V+ +F+ P W + ++ SL + Sbjct: 2 TSVLWFRRDLRLSDHP--ALLAAAADGDVLPLFVIDPALWG--PSGDVRRTYLLRSLRSL 57 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L G + D +D + +++ RRD + + L Sbjct: 58 DAAL---GGALVVER----GDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALA 110 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + PG++ + ++V+TPF +A + A S A+R G Sbjct: 111 AGGRELVRTGTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADSPG--AVRWVGD 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + D P + GE A +F + Y RD P GTSQLS Sbjct: 169 GEGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSH 228 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L G L PR L+ + GA ++ EL WR+FY ++ P + + Sbjct: 229 ALKWGELHPRTLLAALR-------GQSSKGAETYATELCWRDFYADVLWHRPDSAR-EYY 280 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + + + +AW +G TGFPI+DA MRQ+ +GW+HNR+RMITASFLVKDL V Sbjct: 281 KPQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHV 340 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 +W+ G FM L D DLASN GWQW A +G D+ P+FR+FNP QG+RFDP G ++R Sbjct: 341 EWQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRR 400 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++PEL ++P + +H P D YP IVDH L +Y + Sbjct: 401 FVPELRHLPGKSVHTPWEAADGYAHG--YPERIVDHAHEREVALAEYARVR 449 >gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104] gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104] Length = 442 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 209/473 (44%), Gaps = 33/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL Sbjct: 1 MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + +V + + + + + RRD + Sbjct: 56 VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V + L+PPG + Y+V+TPF + + ++ A L Sbjct: 109 L-ASVPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDP 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P GE A + + F + Y + R P I+GTS++S Sbjct: 168 ARLGITACEI---PDPGATLDLAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L +GA ++L EL +R+FY ++ P+ Sbjct: 225 AHLKFGTIHPRTLVADL--------DLRTAGARAYLRELAFRDFYADVLHHRPASAWRNW 276 Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 ++ +AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKD Sbjct: 277 NSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G + Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL ++ + YP PIVDH L +Y + Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYPAPIVDHATERAEALRRYRSM 442 >gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 486 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 46/478 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60 A V + W R DLR+ DN ALY A + + +V+ +FI E + + F Sbjct: 50 NAKQKRKVSIFWFRRDLRLNDNTALYNALKSQN-EVVPLFIFDTEILDKLEDKKDARVEF 108 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I+ ++++Q+ L Q G + + + ++ NR YE + +RD Sbjct: 109 IHLYIMKIQEQLKQVGSTLIVKHGTVD----NAFKELVSEFDIQSVYVNRDYESSAKQRD 164 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++K ++ + +D + S N YKV+TP+ K + L D P Sbjct: 165 ERIKKYVKQSANAEFYDFKDQVIFEASSTNKDGSPYKVFTPYSKKWLSILTSEDYSCRPS 224 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ P + I + ++ V Y + RD P+I Sbjct: 225 ESLMEKF----WKSPERKVMSLEEIGFEKAG----IPFPSVELNEKIVKNYDKTRDTPSI 276 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GT+++S +L G +S R R K ++LNELIWR+ + ++ Sbjct: 277 EGTTRMSVHLRFGTVSIRDLVRRSKGLNA-----------TYLNELIWRD-FYMMILDQF 324 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 F P +K+ W + AW +G TG+ ++DA MRQLN G+MHNR+RM+ AS Sbjct: 325 PHVENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMHNRVRMVVAS 384 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFNP Q K+FD Sbjct: 385 FLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFNPDSQQKKFD 444 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 P T+I+ W+ ++ T+ YP PIVDHK A L + A Sbjct: 445 PNYTYIKTWI---KDLNTK----------------TYPKPIVDHKLARERCLQAFKKA 483 >gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1] Length = 463 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 219/475 (46%), Gaps = 22/475 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++WLR DLR+ DN ALY A V+ V++ E H + +++ SL + Sbjct: 5 QILWLRRDLRMADNPALYHAAKA--GPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLS 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 KSL + + D++E L + + N YE + K L+ Sbjct: 63 KSLGTRNAKLILRR----GDAVEELTTVANAVGADTIHANTHYEPWWRKAQKK----LKD 114 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIRL 184 + + +D L P G + + YK+YTPF KAL Q L D+ P Sbjct: 115 EIDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDVLPEPETLSSPDDWPA 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + N+ I + +GE A L ++ V Y ++R+ P++ TS+ Sbjct: 175 SDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLS-EWEDHVADYEDKRNFPSVDKTSR 233 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +SP Q W+ LK + D + + + + Sbjct: 234 LSPHLHFGEISPVQVWHALKHKRSDG--WNSFESELIWRDYAANVICEYPAYASENYRED 291 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W + K + L+ W++G TG+PI+DA MRQL GWMHNR+RMITASFL+K Sbjct: 292 YDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMITASFLIKH 351 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE++F L+D D +SN WQW A TG DS + RI P Q ++FD + Sbjct: 352 LLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSEKFDA-AAY 410 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 IR ++PEL ++ YIH P + L YP ++ HK+ ++ Y K Sbjct: 411 IREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSAYKDMKN 462 >gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens] Length = 593 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 83 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ Q + +A+I + V + ++ Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCR 198 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKRVKRNSTPPL-SLFGQLLWREFFYT 317 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 318 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 435 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 496 SRLNIERMKQIYQQ 509 >gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus] gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus] Length = 594 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 120/494 (24%), Positives = 192/494 (38%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + V V+I P + + F+ SL + Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K + Sbjct: 82 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++S I+ Q + +ALI + V + + Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCR 197 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 198 AEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDKHLERKAWVANYERPRM 257 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 258 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-SLFGQLLWREFFYT 316 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 317 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL V W G F LLD D + N G W W + + +F + P Sbjct: 376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 434 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + + ++YP PIV+H + Sbjct: 435 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAET 494 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 495 SRLNIERMKQIYQQ 508 >gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens ATCC 23877] Length = 457 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 203/473 (42%), Gaps = 20/473 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +V DLR+ D+ L AA +D +V+ +F+ P + + F+ L Sbjct: 1 MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++ E + L + Sbjct: 60 DLDASLRRRAGRLVVRSGPVVRVVREVVAECGA--GEVHLAAGVTAYAHHREERLREGLG 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + ++ PG++ + V+TP+ + + ++ + + Sbjct: 118 GSGVALHAHETVTTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAPRTVRV---- 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQL 245 P P P P G + A E R D A TS+L Sbjct: 174 PDGVRGGPLPDRAEVPGTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDDLAGDATSRL 233 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G LS + +R + GA +++ +L WR+F+ ++A P Sbjct: 234 SPYLHFGALSAVELVHRARRRGG-------PGAEAFVRQLCWRDFHHQVLAARPKASAED 286 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K L Sbjct: 287 YRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTKTL 346 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +QG+RFDP G ++ Sbjct: 347 YVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGRRFDPDGAYV 405 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +V + +H P + +L+YP P++D L+++ A+ Sbjct: 406 HRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLIDLADG----LDRFRHAR 454 >gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506] Length = 482 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 159/482 (32%), Positives = 228/482 (47%), Gaps = 22/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA H S KV+ +F ++ ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G Q + + + + + +F+N E RD + L+ Sbjct: 65 RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I LL P I Y VYTPF K + + +LP+ ++ +T Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNA------------LHILRKFCKEKVYYYVEQRDIP 237 + +G L FC +Y Y +QR+ P Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMA 296 A+ GTSQLS L G + R W + + +W EL WREFY+H M Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVWQATVTVMEKCHTEAARINIQTWQQELAWREFYQHAMY 300 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + G + + W+ + L QAW +G TG+PIIDAAMRQ+N GWMHNR RMI Sbjct: 301 NFPELANG-AYREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCRMI 359 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL KDL+++W+ GE+YFM L+DGDL++NNGGWQW+AS+G D P RIFNP QG+ Sbjct: 360 VASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPFTQGQ 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FDP+ +IR W+PEL + T + A S+ YP PIVDH + Y Sbjct: 419 KFDPKSEYIRKWVPELRWIDTASLLA-GKITPIERRSIGYPEPIVDHNQQQRRFKELYKQ 477 Query: 477 AK 478 K Sbjct: 478 QK 479 >gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light photoreceptor gi|414196|emb|CAA50898.1| photolyase [Sinapis alba] Length = 501 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 216/484 (44%), Gaps = 28/484 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL +++SL G + + ++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLRQSLKALGSELTLIKTHS---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +++L R I + + PG + V K + V++ + P + Sbjct: 116 KEKLVERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLM 175 Query: 183 RLTGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 L+ T + + G NA IL +F ++++ Y + Sbjct: 176 PLSAAETVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNS 235 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290 TS LSPYL G +S R+ + + + D + + A +L + R++ Sbjct: 236 KKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDY 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R + +P + + W+ D +AW+QG TG+P++DA MR+L GWMH Sbjct: 296 SRIICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMH 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ N Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P IQG ++DP+G +IR WLPEL +PT++IH P +L NY PIV Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVID 474 Query: 465 KACH 468 A Sbjct: 475 TARE 478 >gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] Length = 457 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 211/475 (44%), Gaps = 24/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +V +DLR+ D+ L+AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + ++ RR++ L +R Sbjct: 60 DLDASLRRRGGRLVVRAGPVAGEVCAV----AAECGAAEVHMAAGVTAYAHRREERLRER 115 Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + PG++ + V+TP+ + + ++ L + + Sbjct: 116 LGDGGVALRVHDTVVTAVAPGAVTPSGSDHFAVFTPYFRRWDRERLRKPLPAPRAVRV-- 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGTS 243 P P P P G + A E D A TS Sbjct: 174 --PDGVRGRPVPERADVSGTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G LSP + +R + G +++ +L WR+F+ ++A P Sbjct: 232 RLSPYLHFGALSPVELVHRAR-------GHGGPGGDAFVRQLCWRDFHHQVLAARPEASA 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 G + + AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 GDYRTRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWRIG +F+ L+DGD+ +N WQW A TG D+ P+ R+ NP +Q KRFDP+G Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQAKRFDPEGA 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL +V + +H P + L YP P++D L ++ A+ Sbjct: 404 YVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLIDLADG----LARFKHAR 454 >gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum] Length = 536 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 141/477 (29%), Positives = 221/477 (46%), Gaps = 27/477 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RN+LR++DN L A ++ VFI P + AR + SL + Sbjct: 64 SIVWFRNNLRLSDNPPLREAAER--GPLLPVFIGEPSR-GASPEGARH-WWRARSLRCLD 119 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SLS+ G + + D L + ++ K+ + + R L+ L Sbjct: 120 HSLSRLGAPLLFLR----GDPAILLPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSG 175 Query: 130 RVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + L P + + A R +P R Sbjct: 176 KPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 235 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P D+ + P GE+ A L F ++++ Y +RD +S Sbjct: 236 SETPEDWGWEPEKPDWAAEMRSFWDP-GEEGARRRLNAFLEKRLKNYAVKRDFLDEDTSS 294 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L+ G +S R W ++E P+ +L+EL WREF HLM +P + Sbjct: 295 LLSPHLANGEISIRSVWWSIRESTA-----PEEDRAKFLSELGWREFSAHLMWHHPDLAT 349 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +P +I W +D L AW++G TG P++DA MRQL +G++ NR+RM+ SFLVK Sbjct: 350 -QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAGSFLVK 408 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFNP +QG++FDP+G Sbjct: 409 NLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 468 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN--YPLPIVDHKKACHHTLNQY 474 +++ +LPEL +P +Y+H P + D + + Y PIVD + L + Sbjct: 469 YVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQAW 525 >gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78] Length = 455 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 204/469 (43%), Gaps = 20/469 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + LPPG ++ + + V+TP+ + ++ L P Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S+ + + GE+ L + ++ + Y + D A GTS+ Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R + ++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAARPAAAHE 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + H AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P R+ NP Q +++D +G + Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDSEGDY 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 +R W+PEL + + +H P + YP P+VD + Sbjct: 405 VRQWVPELRGIEGRAVHEPWKRPREEREG--YPEPLVDLAEGRDRFRRA 451 >gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] Length = 488 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 133/491 (27%), Positives = 224/491 (45%), Gaps = 30/491 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 M+V L+W R DLR+ D++ L AC + +I ++ P + + ++ F+ Sbjct: 1 MAV-LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL +++ L +G Q + + + + V ++ + + E + Sbjct: 59 LESLADLRQQLRARGSDLVIRQ----GQPEQVIPALAREWGVKAVYAHEEVGTEEEAVAR 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL------QMYKVYTPFRKALIQNLVQADLR 175 L++ LQ I + L + L AL KA I+ + Sbjct: 115 ALQQALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAKAAIRAPLPIPSL 174 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQ 233 P + T + + P ++ G A L+ + + ++ Y E Sbjct: 175 PPLPPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKET 234 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+LS +L++G LSPR + +K + + + + EL+WR+++R Sbjct: 235 RNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV--RNESTYWLVFELLWRDYFR 292 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++A + + I I W +D QAW +G TG+P++DA MR+L G+M NR Sbjct: 293 FILAKHGAKLFCPAGIQGI-PIPWQQDGDRFQAWCRGETGYPLVDANMRELAATGFMSNR 351 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL K+L +DWR+G E+F S L+D D+ASN G W + A GND+ FR F+ Sbjct: 352 GRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIP 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q + +DPQG ++RHWLPEL +P IH P+ L ++YP P+VD K+ Sbjct: 411 KQSRDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDYPRPVVDLGKS 470 Query: 467 CHHTLNQYYAA 477 + Y AA Sbjct: 471 LQASRRAYEAA 481 >gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 483 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 126/485 (25%), Positives = 203/485 (41%), Gaps = 33/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62 S LVW+RNDLR+ D+ L A + D +VI V+ P + +S+ ++ F+ Sbjct: 3 STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ S+ G + + L Q ++ ++ E + Sbjct: 62 ESVQDLRDSVQDLGADLVVRR----GRPEDILPELVRQTGANEVLQFQEIGGEEEDVETA 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVP 180 +E L+ F L + KVYT FRKA+ + P Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYYV 231 + L + P +IP + F + G + + + + Y Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237 Query: 232 EQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ +++ S +L+ G ++PRQ ++ + + ELIWR+F Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNK--STYWMKFELIWRDF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + ++ I + +W + W G TG P +DA MR+LN G+M Sbjct: 296 FSYVTWKAGERLFRPGGINGNDI-DWRYYDESFERWAAGTTGIPFVDANMRELNRTGYMS 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS L + L +DWR+G YF S+L+D D+ASN G W + + GND P R FN Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q KR+D G ++R+WLPEL +VP +Y+H PH + L +YP P+VD Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKYGCVLGADYPKPVVDLD 472 Query: 465 KACHH 469 K Sbjct: 473 KTYQR 477 >gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur 52237] Length = 534 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 149/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ZM4] Length = 469 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 149/478 (31%), Positives = 240/478 (50%), Gaps = 28/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +SF +++L P ++ N Q +++++ + +A+ +++ + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLEELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR G+++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W+ EL +V T +IH P + NYPLPI+ H++ + L + + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRNRALRAWKEIR 467 >gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655] Length = 534 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 149/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei MSHR346] Length = 486 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERVGGRPLGGAAR-WW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 59 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis] gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis] gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis] gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis] Length = 526 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 116/492 (23%), Positives = 195/492 (39%), Gaps = 32/492 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL AA + A++ +FI P + +S + F+ +L + Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L + + E + +VT+L + E +RD +EK Sbjct: 64 ENLKKINSRLFVVR----GKPAEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAE 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + S L + T R + + R + P + Sbjct: 120 HDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPLGPPKRPIKAPTLENMKDCH 179 Query: 190 PSNIPRFF------------DYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQ 233 + P + ++P GE +++ + E Sbjct: 180 TPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVCNFKKPET 239 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 T+ LSPY+ G LS R W ++ + + S +L+WREFY Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGKK--HSDPPVSLHGQLLWREFYYT 297 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 A P+ + P +++W+ + L+AW +G TG+P IDA M QL T GW+H+ Sbjct: 298 TGAGIPNFNKME-GNPVCVQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G++ F LLD D + N G W W +++ +FR+++P Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSASAFFHQ-FFRVYSPV 415 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 GK+ D G +I+ +LP L P +YI+ P + +YP PIV+H Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVV 475 Query: 467 CHHTLNQYYAAK 478 + + AA Sbjct: 476 SKQNIQRMKAAY 487 >gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1] gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1] Length = 476 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 148/491 (30%), Positives = 230/491 (46%), Gaps = 46/491 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +VWLRNDLR++DN AL AA D ++ V+I + + + Sbjct: 1 MSRSENQP-SIVWLRNDLRLSDNPALTAATSE-DRPLVVVYIHDETGDGIRPLGSASKWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L + G + + L + + T + +NR+Y Sbjct: 59 LHHSLTALDAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYTAARDIDA 114 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L + + +S ++L P I N + YKV+TP+ +A + V+ LR+ Sbjct: 115 GLKASLREQGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTT 174 Query: 181 AIRL------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 +R + + N+ + + + GEQ A + L F E++ Y R Sbjct: 175 TLRWLAGSPASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADYHR-R 233 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRH 293 D PA+ TS LSP+L G +SP Q W RL+ D+ ++ +L+E+ WREF Sbjct: 234 DEPAVDATSGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTA 293 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLL------------QAWKQGYTGFPIIDAAMR 341 L+ P + + P W + +AW++G TG P++DA MR Sbjct: 294 LLFDNPRLATD-SYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMR 352 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G MHNR+RM+ ASFL+K+LL+DWR GE++F L+D D ASN WQW A +G D Sbjct: 353 ELWHTGTMHNRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGAD 412 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFR+FNP +Q K+FDP G ++ W+PEL + NYP PIV Sbjct: 413 AAPYFRVFNPILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIV 453 Query: 462 DHKKACHHTLN 472 D + L Sbjct: 454 DLAETRREALE 464 >gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN] Length = 488 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 166/491 (33%), Positives = 235/491 (47%), Gaps = 30/491 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW R DLR D+ ALY A KV VF+ + R+ FI +L++ Sbjct: 6 ATGLVWFRRDLRACDHAALYHALTQC-RKVHCVFVFDRAILDALPRADRRVAFIREALVE 64 Query: 68 VQKSLSQKGIV----FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + +L + + + + ++ N E + RD L+ Sbjct: 65 LDAALRTLASHPAGGLIVRHAL----ATDAVPELAQALQAQAVYANHDDEPQALSRDSLV 120 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRS 176 RL I +F D LL +L A Y V+TP++ A ++ + +R Sbjct: 121 RTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQLQSYAVVRH 180 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A R P + P+ + L + ++++ Y + RD Sbjct: 181 AHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFLQRIHRYADTRDY 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 PAI+G S LS +L G +SPR GA +WLNELIWR+FY ++A Sbjct: 241 PAIKGPSYLSVHLRFGTISPRLLARSAHALAQGGN----PGATTWLNELIWRDFYCQILA 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +P V + + F P + I+W AW +G TG+P++DAAM QLN G+MHNRL Sbjct: 297 HHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMAQLNQTGYMHNRL 355 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D+ PYFRIFNP Sbjct: 356 RMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVS 415 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467 Q ++FD +G FIR +LP+L +P +HAP L +YP PIVDH A Sbjct: 416 QSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHHYPQPIVDHDSAR 475 Query: 468 HHTLNQYYAAK 478 TL +Y K Sbjct: 476 QRTLQRYAVVK 486 >gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786] Length = 486 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 149/494 (30%), Positives = 227/494 (45%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A +++ +VW R+DLR++D+ AL A S VI ++ E + + Sbjct: 1 MSAVFSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G D + + S+ +++NR+Y + + D Sbjct: 59 LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L+ R I ++ L PG ++ + + Y+V+T + +A ++ V A + P Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174 Query: 180 PAIRLTGPVTPSNIPRFF---------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD P TS+LSP++ G LS RQ W+ + ++ EL WREF Sbjct: 235 ATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQA-DLDTFCRELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 CYGQLYRFPDLARRN-LRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QGK+FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PIAQGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + + Sbjct: 473 AARKRALDAWVTVR 486 >gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b] gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a] Length = 486 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 59 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAPRAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus HTCC2559] Length = 434 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 139/479 (29%), Positives = 211/479 (44%), Gaps = 49/479 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M V + W R DLR+ DN A D V+ +FI + + + + F Sbjct: 1 MSKK----VSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTF 55 Query: 61 IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 I+ +L +++K L D + S ++ ++F NR YE R Sbjct: 56 IFETLQEMRKELQDDYDSSLAMFH----DTPEKVFKSLVKDYQIQEVFTNRDYEPYAKER 111 Query: 120 DKLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D +++ L I + + ++ Y VYTP++ +N + Sbjct: 112 DTSIKELLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKD-HTLKIH 170 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + L V + +P + Y + R+ PA Sbjct: 171 YTSQHLDNTVKNTRLPNVSLSEMGFKKSSIS-------FPEYDTSPTLIENYNDTRNFPA 223 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS LSP+L G + R+ + + + + ++ NELIWREF+ ++ + Sbjct: 224 KDGTSNLSPHLRFGTVGIRKIYKKAIDAKDE----------TFWNELIWREFFMQILYHF 273 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F ++IEW + + WK G TG+P++DA MRQLN G MHNR+RM+ Sbjct: 274 PE-TVNNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVG 332 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD +++SN G WQW A +G D+ PYFRIFNPT Q +F Sbjct: 333 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKF 392 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D T+I HW+ E N + YP +VDHK+A LN Y +A Sbjct: 393 DKNKTYINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432 >gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis] Length = 586 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 117/495 (23%), Positives = 197/495 (39%), Gaps = 31/495 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R LR+ DN AL AA + V ++I P + + F+ SL + Sbjct: 11 CSVHWFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLEDL 69 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + + RVT+L + E RD + K + Sbjct: 70 DNSLRKLGSRLFVVR----GQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLAK 125 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++S I+ + + +I + + ++ Sbjct: 126 EAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQMEMC 185 Query: 188 VTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 T Y +++ ++ GE AL L K + K + +R Sbjct: 186 KTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAWVANYERPR 245 Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 + LSPYL G LS R + RL E + + + + S +L+WREF+ Sbjct: 246 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFY 304 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 305 TAATNNPKFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 363 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + DL + W G F LLD D + N+G W W + + +F + P Sbjct: 364 ARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMWLSCS-AFFQQFFHCYCP 422 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 G+R DP G ++R +LP+L P++YI+ P + + K + ++YP P+V+H + Sbjct: 423 VGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAE 482 Query: 466 ACHHTLNQYYAAKKQ 480 + + +Q Sbjct: 483 TSRLNIERMKQIYQQ 497 >gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max] gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max] Length = 681 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 137/492 (27%), Positives = 220/492 (44%), Gaps = 28/492 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A VI+VFI PE+ Q+ ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVISVFIWAPEEEGQYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G + + +SI L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRNLGSPLITKRST---NSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I +S L P + + Q + ++ F + + LP I Sbjct: 116 KEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + R Sbjct: 176 IPGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S ++ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D + Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474 Query: 466 AC-HHTLNQYYA 476 L Q + Sbjct: 475 VRLQEALIQMWQ 486 >gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH 8109] Length = 493 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 103/477 (21%), Positives = 172/477 (36%), Gaps = 43/477 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLRI D++ L AA V+ +++ PE W+Q S RQ F SLL+++ Sbjct: 5 QIVWFKRDLRIVDHQPLAAAAER--GLVLPLYVVEPELWQQPDASERQWMFCRESLLELR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+ +G D ++ L+ Q + L+ + + + Sbjct: 63 QALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGAWAR 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R + + + + +++ Sbjct: 119 RHGIAWTEIPQFGVTRQMRSRNGWAKR--------WEVQMMEPITPVPAALQSLEGIDPG 170 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247 + P G L L F + + Y P T LS Sbjct: 171 VIPERPCRELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPNTAFTGCSRLSA 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ G LS R+ + + E H + +P Sbjct: 231 YLTWGCLSMREVLQT--------------SRTNSGRGVSSFESRLHWHCHFIQKLEDQPA 276 Query: 308 IPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 I +++ + + L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 277 IEYSDFHPFMRGIRADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFAS 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L + WR + Q +D + + Q +G+ S+ RI+NP QG DPQG Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQG 394 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 FIR W PEL +VP +IH P L P PIVD + ++ + ++ Sbjct: 395 LFIRQWCPELKDVPKIHIHEPW------MLGGGMPPPIVDVTTSMQDAKDRIWEVRR 445 >gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 471 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 162/483 (33%), Positives = 235/483 (48%), Gaps = 29/483 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M ++W+RND R DN AL A ++ + +I ++ PE + S + ++S Sbjct: 1 MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIKIETTSYA---YFFSS 57 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLL 123 L +S +KG+ + + + + D+ + + K++YN +++ L Sbjct: 58 LNSYYESCLKKGLDIYFL----YGEILTCFDTLLNEFSNIDKIYYNTIECGYGKSQEQKL 113 Query: 124 EKRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ + + L +L YKV+T + + + + Sbjct: 114 NRFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKLS 173 Query: 183 RLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + + D GE+ A L F K+ Y E R+ P Sbjct: 174 EIILSDFSKKDPIGKEKFIELRNLLNNDFSMFTGEEKARECLADFMNAKLCSYNENREYP 233 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + GTS LS YL+ G LS R+ +N L G ++ EL WR+FY + F Sbjct: 234 FLDGTSHLSHYLTTGQLSVREVFNAATMMPFSL------GQEIFIKELAWRDFYNMIYYF 287 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P+ + I I W D WK G TGFPIIDAAMRQL GWMHNRLRMIT Sbjct: 288 HPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLRMIT 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL+KDLL+DWR+GE+YF L+D D ASN GGWQWAAS G D+VPYFRIFNP Q K+ Sbjct: 347 ASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQSKK 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471 +DP+G FI+ ++ EL ++PTQYIH P + + D+ Y PIVDHK L Sbjct: 407 YDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQKAL 466 Query: 472 NQY 474 + Sbjct: 467 EMF 469 >gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria bacterium] Length = 485 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 105/484 (21%), Positives = 202/484 (41%), Gaps = 26/484 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VW++ DLR D+++ + A + + + V+I + S R FIY SL+ Sbjct: 5 AINIVWIKRDLRTLDHES-FHAAESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSLID 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K LS + + S++ Q ++ +F ++ I + + + ++ Sbjct: 64 INKKLSSFNKEVEIL----YGPSLDIFKYLITQFKIENIFSYQESGIKQSWQRDIKVRKF 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + I + + +I+N + + + L Sbjct: 120 CNENSINWVEFQRDGIIRGIKDRKNWNKNWHIQMHSQIIENSFKKQKKLKFLNKFPLPKK 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245 + + ++ P GE A L+ FC +++ Y P S+L Sbjct: 180 L--------INRINSNLNSFQPAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISCSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY+S G L+ + ++ L + K + ++ L W + + Sbjct: 232 SPYISWGNLNIKLVYHHL--IKLKKKNKNLRSINAVISRLHWHCHFIQKFEVDCTYETD- 288 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 ++ + ++AW++G TG+P++DA+MR + GW++ R+R + SF V +L Sbjct: 289 FINKGFNSLKRKTNIKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVSFFVHNL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR G + Q LD + + +Q A G + RI+NP K DP G FI Sbjct: 349 DQDWRDGVYFLAKQFLDYEPGIHYTQFQMQA--GTTGINTIRIYNPVKNSKDHDPDGVFI 406 Query: 426 RHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+PEL N+P ++IH P S + K + +YP PIV+ K+ H + + K Sbjct: 407 KKWIPELKNIPKEFIHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEKIWGHLK 466 Query: 480 QSLL 483 ++ Sbjct: 467 NKMV 470 >gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243] gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a] gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305] gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e] gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13] gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pakistan 9] gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b] Length = 486 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 59 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum] gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum] gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum] Length = 682 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 138/493 (27%), Positives = 218/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 1 MSSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKN 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL Q+ SL G + + DSI L T++F+N Y+ + RD Sbjct: 59 SLSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I +S L P + + Q + + F + + LP I Sbjct: 116 KEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S ++ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474 Query: 468 ---HHTLNQYYAA 477 L Q + Sbjct: 475 VRLEEALIQMWQL 487 >gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens] Length = 497 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 141/487 (28%), Positives = 219/487 (44%), Gaps = 20/487 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VWLR DLR+ DN AL+ A V+ ++I E + + +++ SL Sbjct: 1 MVCTVVWLRYDLRLIDNPALFHAAKR--GHVVIIYILDQETPGKWKLGKASLWWLHHSLK 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q L + I + + D + L LQ R +++NR YE V+RD+ +E+ Sbjct: 59 SLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEA 115 Query: 127 LQHRVICKS-------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L+ + ++ + MY + + + Sbjct: 116 LKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTLD 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ + + D+ + + GE A+ L++F K K+ Y + ++ Sbjct: 176 IKVQTDTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWP 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 TSQLS +L G +SP W+ KE L P + +L EL WR+F HL+ +YP Sbjct: 236 SKTSQLSTHLHFGEISPFVVWHTAKESVH-LRSVPSDSSQKFLTELGWRDFCFHLLHYYP 294 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 K + ++ W D L+ W+QG TG+PI+DA MR+L G + R+R I AS Sbjct: 295 DFPE-KSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVAS 353 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+ W+ G E+F L+D DLA N+ WQ G D YF I NP QG+RFD Sbjct: 354 FLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFD 413 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473 G ++R W+PE+ + YI P L YP IV+HKKA L + Sbjct: 414 SDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARDVALTK 473 Query: 474 YYAAKKQ 480 + K+Q Sbjct: 474 FAPLKRQ 480 >gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 132/482 (27%), Positives = 215/482 (44%), Gaps = 27/482 (5%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + +++ + TK+ +N Y+ + RD ++++L I Sbjct: 59 SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTGPVTPSN 192 + L P I + + ++ + K ++ +++ +P T V + Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWACS 175 Query: 193 I------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 I + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + +K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475 IR WLPEL +P+++IH P +L NY PIVD A + + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 476 AA 477 A Sbjct: 475 EA 476 >gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576] Length = 486 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 59 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L R I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668] Length = 486 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 150/494 (30%), Positives = 231/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + D + + S+ ++++R+Y + D Sbjct: 59 LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 L+ +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTLLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV H Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum] Length = 682 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 217/493 (44%), Gaps = 28/493 (5%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 1 MSSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKN 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL Q+ SL G + + DSI L T++F+N Y+ + RD Sbjct: 59 SLSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I +S L P + + Q + + F + + LP I Sbjct: 116 KEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + G NA L F + Y R Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L +S ++ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W D +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467 +G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV+ A Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474 Query: 468 ---HHTLNQYYAA 477 L Q + Sbjct: 475 VRLEEALIQMWQL 487 >gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) Length = 702 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 133/482 (27%), Positives = 215/482 (44%), Gaps = 31/482 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+ Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + DS+ L +++F+N Y+ + RD + L + Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I ++ L P + + + + ++ F + + + LP I Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189 Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P F+ + + + G N L F + Y + R TS Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G ++ + + +L + RE+ R++ +P Sbjct: 250 LSPHLHFGEVAW----------ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHE 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK Sbjct: 299 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP G + Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 418 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYY 475 +R WLPEL+ +PT +IH P + + +L NYPLPIV +A L+Q + Sbjct: 419 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 478 Query: 476 AA 477 Sbjct: 479 QL 480 >gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis] gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis] Length = 660 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 130/486 (26%), Positives = 208/486 (42%), Gaps = 33/486 (6%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+AVF+ PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + SL G V + + DS+ L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRA 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ L + I + L+ + Sbjct: 116 KEVLTAQGIAVRSLT---------RICYMNPGXXCLSMPYDPEAPLLPPKRIISGDISRC 166 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + + + + G NA L F + Y + R TS Sbjct: 167 PSDTLIFED--ESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 224 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSP+L G +S R+ + ++ + + + +L + RE+ R+L +P Sbjct: 225 FLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHP 284 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 285 -YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 343 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP +G +FD Sbjct: 344 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HHT 470 P G ++R WLPEL +PT++IH P + + +L NYPLPIV A Sbjct: 404 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEA 463 Query: 471 LNQYYA 476 L++ + Sbjct: 464 LSEMWQ 469 >gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 514 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 106/475 (22%), Positives = 174/475 (36%), Gaps = 24/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW + DLR+ D+ AL A V+ V+I PE W+ +SARQ F + + + Sbjct: 8 LVWFKRDLRVADHPALARAAAL--GPVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G + +++ L+ +T + + + R Sbjct: 66 ELAALGAPLRIET----GEAVAVLERLRAAHGITLMISHEEIGNGWTY----------AR 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + L + + ++ A ++ A + + G Sbjct: 112 DRAVADWARAQGVAWEELAQSGVVRRLNGRDGWARTRDRFMAQPQVAVPVLRGVDGGGGA 171 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPY 248 G AL +L F E+ Y P + S+LSP+ Sbjct: 172 LPDAAALGLADDPCPGRQRGGRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSPH 231 Query: 249 LSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 L++G LS R+ ++ S+ L WR+ + + P + Sbjct: 232 LALGTLSGREAVQAAAMRKAEVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHAC 291 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + D L AW +G TG P +DA MR L GW++ R R + + L Sbjct: 292 LHSAYEGLRPAVPDPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYHL 351 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR D + + Q +G + RI+NP QG DP+G F Sbjct: 352 WLDWRASGTILGRYFTDFEPGIHWP--QVQMQSGTTGMNTVRIYNPVKQGHDNDPEGVFT 409 Query: 426 RHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R WLPEL VP +Y+ P W + L+ YP PIV+ K A ++ +A ++ Sbjct: 410 RRWLPELAEVPDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464 >gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio] gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio] Length = 519 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 121/500 (24%), Positives = 194/500 (38%), Gaps = 34/500 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + + W R LR+ DN AL AA + + +F+ P + I + F+ +L Sbjct: 1 MSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + E L Q ++T+L + E RDK + K Sbjct: 60 KDLDSSLKKLNSRLFVVR----GSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-----------FRKALIQNLVQADL 174 + + + S L + T K I D+ Sbjct: 116 LAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDM 175 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----LHILRKFCKEKVYY 229 R + P ++ P G + + + + Sbjct: 176 RGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFE 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + I T+ LSPY+ G LS R W RL + + S +L+WRE Sbjct: 236 KPKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVY--RGKTHSDPPVSLHGQLLWRE 293 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P+ + +++W+ + L AW++ TGFP ID M QL GW+ Sbjct: 294 FFYTTAVGIPNFNKME-GNSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWI 352 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G++ F LLD D + N G WQW +++ YFR+ Sbjct: 353 HHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS-TFFHQYFRV 411 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 ++P GK+ D G +I+ +LP L PT+YI+ P + +YP PIVD Sbjct: 412 YSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVD 471 Query: 463 HKKACHHTLNQYYAAK-KQS 481 H+ + + AA K+S Sbjct: 472 HEVVHKKNILRMKAAYAKRS 491 >gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142] gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142] Length = 491 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 116/491 (23%), Positives = 213/491 (43%), Gaps = 33/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ +Y A A +I ++ Q++ + F+ S+ Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + + + + + ++++ + E +K +++ Sbjct: 71 ANLRQSLQDLGSNLIVRK----GYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQ 126 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + Q+ +V+T FRK + ++ P+ + Sbjct: 127 ALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPF 186 Query: 185 TGPVTPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + G + + K Y E R+ Sbjct: 187 PNIELGKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLKEY--KETRN 244 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +S+ SP+L+ G LSPR + +++ + + + + EL+WR+++R + Sbjct: 245 GMLGADYSSKFSPWLAQGCLSPRYIYEEVQKY--EDARVKNNSTYWLIFELLWRDYFRFI 302 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 A + + + + + W +D + W++ TG+P++DA MR++ G+M NR R Sbjct: 303 CAKHGNKIFYESGLQGLDI-PWKEDKERFKLWQESKTGYPLVDANMREIAATGFMSNRGR 361 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 362 QNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQ 420 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 K +DP+G ++RHWLPEL +P IH P + ++YP P+VD K+ Sbjct: 421 SKDYDPKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPRPVVDFFKSVK 480 Query: 469 HTLNQYYAAKK 479 Y +A K Sbjct: 481 ANEKVYNSATK 491 >gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica] gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica] gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica] gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 130/482 (26%), Positives = 216/482 (44%), Gaps = 27/482 (5%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + +++ + TK+ +N Y+ + RD ++++L I Sbjct: 59 SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + L P I + + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + +K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475 IR WLPEL +P+++IH P +L NY PIVD A + + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 476 AA 477 A Sbjct: 475 EA 476 >gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica] gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica] Length = 590 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 130/482 (26%), Positives = 216/482 (44%), Gaps = 27/482 (5%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + +++ + TK+ +N Y+ + RD ++++L I Sbjct: 59 SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + L P I + + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + +K+ + A +L + RE+ R++ +P Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GW+HNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475 IR WLPEL +P+++IH P +L NY PIVD A + + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 476 AA 477 A Sbjct: 475 EA 476 >gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822] Length = 476 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 162/477 (33%), Positives = 240/477 (50%), Gaps = 17/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI+DN L AA S K++ +F P + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRISDNIGLSAARQKSP-KIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + + + + + +F+N E RD+ + LQ + Sbjct: 65 QYQQAGSQLLILR----GEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183 I + L PG ++ + YKV+TPF + + Q+ L+ L + Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKLEGLKGLTEEELT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 LT ++P + +P+ GE A L +FC + Y EQR+ PA+ GT Sbjct: 181 LTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVDGT 240 Query: 243 SQLSPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S+LS L G + R W L+ + + +W EL WREFY+H M F+P + Sbjct: 241 SRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPEL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G + W + QAW +G TG+PI+DAAMRQLN WMHNR RMI ASFL Sbjct: 301 AEG-SYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR WLPEL +V T+++ + YP PIVDHKK + + Sbjct: 419 GEYIRQWLPELRSVDTEFLIS-GKIPSLERYQCGYPEPIVDHKKRQAEFKLLFQEVR 474 >gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina] Length = 591 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 132/482 (27%), Positives = 215/482 (44%), Gaps = 27/482 (5%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLRI DN AL AA + V VFI PE+ Q ++ SL + +SL G Sbjct: 1 DLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + +++ + TK+ +N Y+ + RD ++++L I Sbjct: 59 SELTLIKTH---NTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115 Query: 137 DDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + L P I + ++ + K ++ +++ + P + +T Sbjct: 116 FNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175 Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + + G NA IL +F ++++ Y + TS LS Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235 Query: 247 PYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 PYL G +S R+ + +K+ + A +L + RE+ R+L +P Sbjct: 236 PYLHFGEISIRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFP-FTHE 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+I +SF VK Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ G +YF LLD DL + GWQ+ + + D R+ NP IQG +FDP+G + Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYY 475 IR WLPEL +P+++IH P +L NY PIVD A + + Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474 Query: 476 AA 477 A Sbjct: 475 EA 476 >gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 127/490 (25%), Positives = 216/490 (44%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN A D V+ VFI P + + ++ SL + + Sbjct: 8 VVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + ++ L T++ YN Y+ + RD ++ L Sbjct: 66 SLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELLGL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P + + + + + + ++ + P + ++G Sbjct: 123 GISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGIEN 182 Query: 190 PS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + G +NA L F + Y + R A Sbjct: 183 ICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVAGT 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLMA 296 TS LSPYL G +S R+ + ++ + + + KSGA +N + RE+ R+L Sbjct: 243 TTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +QG+ Sbjct: 362 VSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQ 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 422 KYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECL 481 Query: 469 -HTLNQYYAA 477 ++ + Sbjct: 482 DDAISTMWQL 491 >gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio sp. Ex25] Length = 493 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 109/486 (22%), Positives = 193/486 (39%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A +S + ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L G F D++ S +Q ++ +F +++ +N Sbjct: 62 MNETLKAYGHRITVL----FGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQI--- 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + G+++ A + + ++ DL++ + ++ Sbjct: 115 -ADWLHEQNITWFEFEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQTNLLHSLDAESL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 + P + + M G Q A L F + Y P T+ L Sbjct: 174 GCAFSPPSSWLSKCKG---MQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRTACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + + L W + + Sbjct: 231 SPYLAWGNISLREVYQYLLKHWQVVG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + K D L AWK GYTG P+IDA MR L+ G+++ R+R + SFL Sbjct: 289 VNRAYESLIKQSSTFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G RI+NP Q + DP G Sbjct: 349 HMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPVKQAQEHDPDGA 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VPT + P + + Y PIVD A + +A Sbjct: 407 FIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKDARERLWAW 466 Query: 478 KKQSLL 483 +K++ + Sbjct: 467 RKRADV 472 >gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1] Length = 486 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 112/478 (23%), Positives = 183/478 (38%), Gaps = 34/478 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+ L W R R+ DN AL+ A + +V VF+ P + + + +F+ SL Sbjct: 5 SISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLESLKD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L G + E L + +VT+L Y E RD + Sbjct: 64 LDEQLRGLGSRLYVLR----GKPEEQLPKKFKEWKVTRLTYELDTEPYARVRDAAINDLA 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + ++ A M + K +S VP ++ G Sbjct: 120 KKHNV-------------EVIAEAGHMLHDPESYLKKCGGASKDRQDKSYDVPTLKEMGY 166 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + H ++K + + T+ LSP Sbjct: 167 SPIKAPQMVLFPGGEREALKR------LEHFIKKKNWIATFEKPKTNPAALDPDTTGLSP 220 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y+ +G LS R+ W +++ + + S +L++RE + + K Sbjct: 221 YMKMGCLSVRKFWYDVQKVYDEKKDHSTPP-ESLHGQLLFRELFHLCGYAVKNFDKMK-G 278 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366 +I+W+ L AW+ TG+P IDA M QL GWMH+ R A FL + DL Sbjct: 279 NRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAVACFLTRGDLY 338 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W G F L+D D NN W W + + YFR+++P G+++D +G FIR Sbjct: 339 QSWEHGARIFEKHLVDADWHLNNANWMWLSCSSFFYQ-YFRVYSPIGFGQKYDKEGAFIR 397 Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +LP L ++P +YI+ P K + +YP PIVDH ++ A Sbjct: 398 KYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIGKDYPEPIVDHSDVSETNKDRMKACY 455 >gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505] Length = 484 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 228/478 (47%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR +DN L A KV+ VF P Q I+ + ++ L ++ Sbjct: 11 LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SQ G D+ + + + +F+N E RD+ + L+ R Sbjct: 70 LYSQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 125 Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + P +IL+ A Y VYTPF K + L Sbjct: 126 GIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEILANCENLTAREE 185 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + + + GE A L F + Y E+R+ PAI G Sbjct: 186 EIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 245 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L GV+ R W + +E + +G +W EL WREFY+H M +P Sbjct: 246 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 305 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W+ + QAW +G TG+PI+DAAMRQLN GWMHNR RMI ASF Sbjct: 306 LAEG-AYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 364 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP+ Q ++FD Sbjct: 365 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDS 423 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IRHW+ EL +V T+Y+ + S+ YP IVDHKK Y K Sbjct: 424 DGEYIRHWVGELASVETEYLIG-GNITPLERQSVGYPTSIVDHKKQQALFKQLYQQQK 480 >gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f. nagariensis] Length = 914 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 222/477 (46%), Gaps = 23/477 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW R DLR+ DN A A N+ A VI VFI PE+ Q + SL+ + Sbjct: 15 TAVVWFRRDLRVDDNPA-LEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDL 73 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q++L+ G + + DS L + R +F+N Y+ + RD ++ L Sbjct: 74 QQALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLA 130 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + P +L+ Q Y + F ++ V A+ Sbjct: 131 AAGVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPA 190 Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 PS + D+ F + + G A+ L +F E+++ + R Sbjct: 191 FVPSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDR 250 Query: 240 QGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS+LSP++ IG +S R + + + E++ + +L ++ +RE+ R+L Sbjct: 251 DSTSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSF 310 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R++ Sbjct: 311 HFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVV 369 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK+LL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + + Sbjct: 370 AASFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEAR 429 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 RFDP G ++R WLP L+ +PT+YIH P +L NYP PI+ H A Sbjct: 430 RFDPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDAR 486 >gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 479 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 164/482 (34%), Positives = 221/482 (45%), Gaps = 23/482 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN AA + V VF+ P ++ + F+ SL ++Q Sbjct: 7 LFWHRRDLRLVDNLG-LAAAAAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G Q D E L + +NR E RD+ + LQ + Sbjct: 66 SWRKAGSQLLLLQ----GDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121 Query: 131 VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 D LL L Y+VY PF++ + + P G + Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181 Query: 190 -----------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PS + + P P + + Y R++P Sbjct: 182 YDGELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPGRNMPG 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS LS L G LSPRQ W+ ++ + + W EL WREFY+ + Sbjct: 242 EAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQQALFH 301 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + G P+ P + W D QAW G TG PIIDAAMRQLN GWMHNR RMI Sbjct: 302 FPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNRCRMIV 360 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+LVKDL+ DWR+GE FM++L+DGDLA+NNGGWQW+AS+G D P RIFNP Q + Sbjct: 361 ASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+G +IR WLPEL++V T+ + + + YP PIV HKK H Y + Sbjct: 420 FDPEGDYIRRWLPELSHVNTKDLLSGEITPMER---RGYPAPIVSHKKQQAHFKALYASL 476 Query: 478 KK 479 K Sbjct: 477 PK 478 >gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca] gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca] Length = 645 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 29/497 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +VW R DLRI DN A D V V+I P+ + Sbjct: 1 MGSSNK---TIVWFRRDLRIEDNP--ALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWW 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +SL G + D ++ L TK+ +N Y+ + RD Sbjct: 56 LKQSLAHLDQSLKSLGAQLALIKT---DSTVSALLDCIQAIGATKVVFNHLYDPVSLVRD 112 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L I ++ L P + + Q + + + + + P Sbjct: 113 HNIKGKLVELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMERELVTFLPPW 172 Query: 180 PAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ TG V + + + G A L +F + Y + Sbjct: 173 KLLQATGMVAKYSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKN 232 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289 R TS LSPYL G +S R+ + + + + + +L + RE Sbjct: 233 RTKLGGNSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIGLRE 292 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F R++ +P K + W D +AW+QG TG+P++DA MR+L GW+ Sbjct: 293 FSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWI 351 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+R+I +SF VK LL+ W+ G +YF L+D DL S+ GWQ+ + + D R+ Sbjct: 352 HNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLD 411 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 +P +QG +FDP G ++RHWLPEL +PT++IH P D +L +NYP PI++ Sbjct: 412 SPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPIIEI 471 Query: 464 KKACHH---TLNQYYAA 477 A + + + Sbjct: 472 DLARERLTEAIFKMWEI 488 >gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio] gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio] Length = 598 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 197/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A + +D V V+I P + + F+ SL + Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K Q Sbjct: 64 TSLRKLNSRLFVVR----GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ P I+ + +A++ L + ++ Sbjct: 120 YGVETVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCR 179 Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235 T + Y +++ ++ GE AL L K K + +R Sbjct: 180 TQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFERPRI 239 Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + L++ F+ L + S +L+WREF+ Sbjct: 240 SGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPL-SLFGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W+ + L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AGTNNPNFDHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 358 RHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 G+R DP G +IR ++P+L + P +YI+ P + + + ++YP P+++H ++ Sbjct: 417 GFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHAES 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQVYQQ 490 >gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar] Length = 643 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 114/501 (22%), Positives = 195/501 (38%), Gaps = 35/501 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ + + W R LR+ DN AL A +SD V V+ P + + F+ L Sbjct: 1 MTKNSIHWFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + +++L + E RD ++K Sbjct: 60 EDLDSSLRKLNSRLFVIR----GQPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + L+ ++ D + + Sbjct: 116 LATEAGVEVVSRISHTLYDLDKIIELNGGHPPLTFKHFQTLVDSMPPPDAPVEALSRASM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKF-------CKEK 226 VTP + Y ++ ++P GE AL + + + Sbjct: 176 GRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRIERQLGPDLSTAWQV 235 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + P + LSPYL G LS R +++L E + + S ++L+ Sbjct: 236 NFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKTNGSPPI-SLYDKLL 294 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P P +I W++++ L W + TGFP IDA M QL Sbjct: 295 WREFFYTAATNNPRFDKMD-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMTQLRQE 353 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W + + + Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQF 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 F + P G++ DP+G FIR +LP L ++P +YI+ P + K + ++YP P Sbjct: 413 FHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGVDYPKP 472 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 473 MVNHAEASRLNIERMRQMYQQ 493 >gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] - Synechococcus sp. (Anacystis nidulans) gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15 PhotonsMM2 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8 Exp15 PhotonsMM2 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301] gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus PCC 7942] Length = 484 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 21/478 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183 I D +L P IL+ + Y VY PF K + + + Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ S +P F GE A+ L++FC + Y QR+ PA GT Sbjct: 181 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L G + RQ W + ++ W EL WREFY+H + +PS+ Sbjct: 241 SGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RMI ASFL Sbjct: 301 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 360 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 418 Query: 422 GTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V P I + +++ YP PIV+H Y K Sbjct: 419 ATYIKRWLPELRHVHPKDLISGEITPIER----RGYPAPIVNHNLRQKQFKALYNQLK 472 >gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme) [Aliivibrio salmonicida LFI1238] Length = 479 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 200/475 (42%), Positives = 267/475 (56%), Gaps = 11/475 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + VW R DLRI DN AL AA N + IA+++ + QW++H S+ Q I LL+ Sbjct: 6 TTQCVWFRTDLRIADNPALSAALANQE-PTIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L + + C F ++ E L C +T LF N++YE +E+ RD + +L Sbjct: 65 LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIR 183 + ++ + G I+N + YKV+TPF+KA Q+ + VP Sbjct: 125 TNI-ESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 S + R F ++P+ L +R FC+EK Y +QRD PAI GTS Sbjct: 184 QQLSTLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDGTS 243 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 Q+SPYL+IG LS +QC ++ + G WL+ELIWREFY HL+ F+PS+ Sbjct: 244 QISPYLAIGALSAKQCI---LRLHLEANNQLSQGQEIWLDELIWREFYTHLLYFFPSLSK 300 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F+ + + I+WN + W G TG+PI+DAAM+QLNT GWMHNRLRMITASFLVK Sbjct: 301 NHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFLVK 360 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD G Sbjct: 361 DLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNNGV 420 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FI++WLP L + + +H P NY PIVDH TL Y AK Sbjct: 421 FIKYWLPNLAALLGKQLHQPSVKPLLK--PDNYVDPIVDHSVQRLKTLELYKQAK 473 >gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max] gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max] Length = 681 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 135/498 (27%), Positives = 222/498 (44%), Gaps = 30/498 (6%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+ VFI PE+ Q+ ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVCVFIWAPEEEGQYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + L G + + +SI L T+LF+N Y+ + RD Sbjct: 59 SLAHLDSYLRNLGSPLITKRST---NSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKA 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ L + I +S L P + + Q + ++ F + + LP I Sbjct: 116 KEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRI 175 Query: 183 RLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + F+ + + + G NA L F + Y + R Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSP+L G +S ++ ++ ++ + + + +L + RE+ R+ Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P +P + + W + +AW+QG TG+P++DA MR+L GW+H+R+ Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + T D + RI NP Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465 G + DP G ++R WLPEL +PT++IH P + + +L NYPLPIV D + Sbjct: 415 VGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474 Query: 466 AC-HHTLNQYYAAKKQSL 482 L Q + ++++ Sbjct: 475 VRLQEALIQMW--RQEAA 490 >gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3] Length = 488 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 174/484 (35%), Gaps = 23/484 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ LVWL+ DLR+ D+ L AA + ++ ++ PE S R F++ SL Sbjct: 1 MNT-LVWLKRDLRLQDHAPLRAAIAAGSSTLL-LYCFEPELLSDPHYSDRHWRFVWQSLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++SL + D E ++ +++ + + + Sbjct: 59 DMRRSLGPQASALHV----CLGDPREIFARLLQDGQLQRVYSYEETGLAKTFARDRDVAA 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + N Sbjct: 115 MLQSHGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPC-----DTTNPQEIYSNAAAGS 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 + ++ + GE A LR F + +V Y P + + S+ Sbjct: 170 TLKAFHLTDPPQSWTASHKDFQTGGESTARRTLRDFLERRVSGYARNISKPLASRESCSR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G LS RQ + L E P ++ + L W + + Sbjct: 230 LSPYLAWGNLSIRQVYQALGEAQNRGG--PSRALQAFESRLHWHCHFIQKFEMECRMEH- 286 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++AW QG TG+P+IDA+MR L G+++ R R + SFL Sbjct: 287 EDINRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHH 346 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWR+G + LD + + Q A G + RI+NP Q + DP G F Sbjct: 347 LWQDWRVGAAHLAGLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEEHDPDGVF 404 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN---YPLPIVDHKKACHHTLNQYYAAKK 479 IR W+PEL VP IH P + L+ Y PIVD + ++ +A K Sbjct: 405 IRQWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARDRLWALKD 464 Query: 480 QSLL 483 S++ Sbjct: 465 DSVV 468 >gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi] Length = 788 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 123/491 (25%), Positives = 191/491 (38%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL N+ VFI P + + F+ L + Sbjct: 37 VHWFRKGLRLHDNPALREGLVNA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 95 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + + Sbjct: 96 SLKKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKCREV 151 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + +ALI ++ P+ L G T Sbjct: 152 GINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNGAKT 211 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P ++ + ++ PM+ GE AL L + + K + R Sbjct: 212 PVSVDHDDRFGVPTLEELGFETEDLKPPMWMGGESEALARLDRHLERKAWVASFGRPKMT 271 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + + S +++WREF+ Sbjct: 272 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKKIK--RVRPPLSLHGQILWREFFYCA 329 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TG+P IDA M QL GW+H+ R Sbjct: 330 ATRNPNFDRME-GNPICVQIPWEKNQEALSKWANGQTGYPWIDAIMIQLREEGWIHHLAR 388 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F +LD D + N G W W + + +F + P Sbjct: 389 HAVACFLTRGDLWISWEEGMKVFDELMLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 447 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YPLP++DH KA Sbjct: 448 FGRKTDPNGDFIRKYIPALKNMPTRYIHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKAS 507 Query: 468 HHTLNQYYAAK 478 L + Sbjct: 508 QINLERIKQVY 518 >gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max] Length = 600 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 138/489 (28%), Positives = 221/489 (45%), Gaps = 23/489 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI DN AL AA D V V+I P++ Q ++ SL Sbjct: 3 MNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSLA 62 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + KSL G + D ++E L + TK+ +N Y+ + RD ++++ Sbjct: 63 HLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEK 119 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVP 180 L I KS++ +L P SI + + + PF + ++ L Sbjct: 120 LVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAFSLIPPQLILAEG 179 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + G L +F ++ + +Y + R Sbjct: 180 KVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVGGD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPY+ G LS R+ + + + + + A +L + RE+ R+L Sbjct: 240 STSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYLCF 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +PS KP + W D +AW+QG TG+P++DA MR+L GW+HN++R+I Sbjct: 300 NFPSTIE-KPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK LL+ WR G +YF LLD DL S+ GWQ+ + D R+ +P I G Sbjct: 359 VSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIHGA 418 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 +FDP+G ++R WLPEL +P ++IH P + +L NYP PI+D +A Sbjct: 419 KFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQAREQL 478 Query: 469 -HTLNQYYA 476 + + + Sbjct: 479 TEAIFKMWE 487 >gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei] Length = 606 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 119/502 (23%), Positives = 200/502 (39%), Gaps = 35/502 (6%) Query: 6 AMSV----HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 AM+V + W R LR+ DN +L AA + V V+I P + + F+ Sbjct: 29 AMAVDGGSSVHWFRKGLRLHDNPSLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFL 87 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + SL + + + + VT+L + E RD Sbjct: 88 LQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 143 Query: 122 -LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +++ + V + + L I++ Q + +A+I + + V Sbjct: 144 AIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVT 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYY 229 + ++ Y +++ ++ GE AL L K + K + Sbjct: 204 SQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWV 263 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +R + LSPYL G LS R + RL + + + S +L Sbjct: 264 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQL 322 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF+ P + P +I W+++ L W +G TGFP IDA M QL Sbjct: 323 LWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQ 381 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A F + DL V W G F LLD D + N G W W + + Sbjct: 382 EGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQ 440 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458 +F + P G+R DP G +IR +LP+L P++YI+ P + + + + ++YP Sbjct: 441 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPR 500 Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480 P+V+H + + + +Q Sbjct: 501 PMVNHAETSRLNIERMKQIYQQ 522 >gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720] Length = 548 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 237/490 (48%), Gaps = 23/490 (4%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W DLR+ DN L A + ++ ++ PE H + Q ++ + SL Q+ Sbjct: 63 HWFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQL 122 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L++ I + D I + + V+ LF N +YE++E+R + Sbjct: 123 QEKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFL 182 Query: 129 HRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180 I + + + S + + + Q L + P Sbjct: 183 EEKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIK 242 Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA 238 +L+ IP + IGE AL L ++ + + RD Sbjct: 243 LEKQLSVSQQDLEIPDVDVDKERFHKYWKMIGEDGALEQLAEYIESDEINKYKDERDFLD 302 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 ++ S +S ++S G +S R L+ ++ +L SG F W+ ++ WR+FY+H++ Sbjct: 303 LESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDFYKHIIC 362 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 ++P VCM KPF + + W D + W G TGFPI+DA MR LN G+++NR R+I Sbjct: 363 YWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLNNRGRLI 422 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+LL+DWR GE+YF+S+L+D D SNNGGW +A+STG D PYFRIFNP Q + Sbjct: 423 VASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFNPWTQSE 482 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 RFDP G FI+ W+PEL +V + +H + L NY PIV HK+ L +Y A Sbjct: 483 RFDPDGEFIKKWVPELVDVSPKMLHK----ETSDPLCANYTAPIVSHKETRSRALEKYKA 538 Query: 477 A----KKQSL 482 A +K++L Sbjct: 539 AMEEGRKKNL 548 >gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 493 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 175/474 (36%), Gaps = 33/474 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLRI D++ L AA V+ +++ PE WRQ S RQ F SLL+++ Sbjct: 5 QIVWFKRDLRIVDHQPLAAAVER--GLVLPLYVVEPELWRQPDASERQWMFCRESLLELR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++L+ +G D ++ L+ Q + L+ + + + Sbjct: 63 QALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGAWAR 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R + + + + + + Sbjct: 119 RHGIAWMELPQFGVTRRMHSRNGWAKRWEV--------QMTEPITPVPAALQALDGIDHG 170 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247 + A G L L F + + Y P T LS Sbjct: 171 VIPERPCSELLLDACPQRQIGGRSTGLEELNDFLQHRAQRYQRSMSSPNTAFTGCSRLST 230 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ G LS R+ G S+ + L W + + P++ F Sbjct: 231 YLTWGCLSMREVLQT-------SRTHSGRGVSSFESRLHWHCHFIQKLEDQPAIEFSD-F 282 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P+ I L AW +G TG P +DA MR L GW++ R+R + SF +L + Sbjct: 283 HPFMRGIRAADA-ERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLWL 341 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR + Q +D + + Q +G+ S+ RI+NP QG DPQG FIR Sbjct: 342 PWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGMDHDPQGLFIRQ 399 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W PEL +VPT +IH P L P PIVD + ++ + ++ + Sbjct: 400 WCPELKDVPTIHIHEPW------MLGGGMPAPIVDVTASMQDAKDRIWDIRRSA 447 >gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421] gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421] Length = 500 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 216/493 (43%), Gaps = 31/493 (6%) Query: 7 MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSH 59 MS LVW RNDLR+ D++ L +A + +A+V+A++ P Q+ + ++ Sbjct: 1 MSTKTVLVWYRNDLRVHDHEPLTSAL-HKNARVVALYCFDPRQFGKAPFGFEKTGPFRAR 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ S+ +++SL Q G + E + + + + + Y+ + E+ Sbjct: 60 FLLESVADLRRSLRQLGSDLLVRR----GHPEEVIPALVSELEIAAVHYHGEVTSEELVV 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L+ L + L L A++ + ++ + Sbjct: 116 ERDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAP 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYV 231 + V P IP+ D ++ Q + K + Y Sbjct: 176 AKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYK 235 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R+ + +S+ S +L++G LS R +++ + + + EL+WR++ Sbjct: 236 QTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQ--TYETKRIKNDSTYWLIFELLWRDY 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + A + + + W +D + W+ G TGFP++DA MR+L G+M Sbjct: 294 FRFIAAKHGDRLFYTAGLRGLDI-PWKEDWERFELWRTGQTGFPLVDANMRELAATGFMS 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L + W +G E+F S+L+D D+ASN G W + A GND+ FR FN Sbjct: 353 NRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG-FRFFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q + +DP G +++HWLPEL +P +H P L L ++YP P+VD Sbjct: 412 ILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVVDLF 471 Query: 465 KACHHTLNQYYAA 477 ++ Y AA Sbjct: 472 QSAAANEAIYNAA 484 >gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37] Length = 472 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 159/476 (33%), Positives = 223/476 (46%), Gaps = 26/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR++D+ AL A S VI VFI G+ + L + Sbjct: 8 LVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRDALV---DGLGTAPQWRLGLGLKSFAE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L KG ++E L + ++++R Y+ + V RD +++ L+ Sbjct: 63 ALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETLKGD 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLT 185 I +SF +L P ++ YKVYTPF KA+ V A Sbjct: 119 GIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQAPATWPDG 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + P +GEQ A L F ++KV Y RD + GTS L Sbjct: 179 ETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRDEVSKDGTSCL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G +SP QCW+ D GA ++L EL+WREF HLM P + G Sbjct: 239 SENLSLGEISPAQCWHAGCRAIEDGK----PGAETFLKELVWREFAYHLMWHTPRLLDGN 294 Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W + ++ ++AWKQG TG P +DAAMR+L G MHNR RMI AS+L K Sbjct: 295 WRQEWDGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARMIVASYLTKH 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ W+IG +F L+D D ASN GWQW+A +G D+ PYFR+FNP Q ++FDP + Sbjct: 355 LMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQREKFDPDCAY 414 Query: 425 IRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + W+ E P+ Y A P SW YP PIVD K+ L+ Y Sbjct: 415 VTRWIAEGRKSPSDTALSYFDAIPESWPMAP--GDAYPDPIVDPKEGREAALDAYQ 468 >gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1] gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1] Length = 480 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 152/485 (31%), Positives = 221/485 (45%), Gaps = 17/485 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS+ L W R DLR+ DN L AA + KV+ +F P I+A + ++ L Sbjct: 1 MSLRLFWHRRDLRLNDNLGLAAAYTRTP-KVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q++ + G F + D + L + ++ E RD+ + Sbjct: 60 ALQEAYRRLGGSFLIFR----GDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ + I LL P + +L + + S P LT Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTE 175 Query: 187 PVT--------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + D + GE A L F + + Y EQR+ PA Sbjct: 176 IEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYPA 235 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAF 297 GTS LSP L GV+ R+ W + + + +W EL WREFY+H + + Sbjct: 236 QPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALYW 295 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + +P W + AW +G TG+PI+DAAMRQLN GWMHNR RMI Sbjct: 296 FPHLAE-RPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIV 354 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++ Sbjct: 355 ASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQK 413 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP+ +IR WLPE+ ++ T + + YPLPIVDH++ Y Sbjct: 414 FDPEAEYIRRWLPEVRSLDTIDLVT-GNISPLERHRCGYPLPIVDHRQQQQRFKQLYQEH 472 Query: 478 KKQSL 482 + + Sbjct: 473 FRSPI 477 >gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389] Length = 475 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 149/487 (30%), Positives = 229/487 (47%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 +VWLR +LR+ DNK+ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + ++ + ++ ++ + YE N + RDK +++ Sbjct: 62 LINDELKKLKGKLLVF----YGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D +L+ P +L + YKVYTP+ +A + + S + Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177 Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKV----------YYY 230 + + + IG L + + Y Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD + GTS +SPYL G++S R+C+ + + G+ +W+NELIWREF Sbjct: 238 KIDRDFLYLDGTSTISPYLRFGLVSIRECYRKAFNAASN------PGSITWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QGK FDP +I+ +LP L NV IH ++ + + NYP PIVD+ + Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467 Query: 471 LNQYYAA 477 + + Sbjct: 468 IEVFKGI 474 >gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10] Length = 442 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 207/473 (43%), Gaps = 33/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL Sbjct: 1 MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + +V + + + + + RRD + Sbjct: 56 VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G + Y+V+TPF + + +++ A L Sbjct: 109 LASVPLVATGSPYLVAP-GRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASARWLDP 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P GE+ A + + F + Y + R P I+GTS++S Sbjct: 168 ARLGITDCEI---PDPGATLDLAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L + A ++L EL +R+FY ++ P+ Sbjct: 225 AHLKFGTIHPRTLV--------ADLDLRAAAARAYLRELAFRDFYADVLHHRPASAWRNW 276 Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKD Sbjct: 277 NSAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G + Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL ++ + YP PIVDH L +Y + Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYPAPIVDHATERAEALRRYRSM 442 >gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori] gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori] gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori] Length = 730 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 122/491 (24%), Positives = 191/491 (38%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LRI DN AL ++ VFI P + + F+ L + K Sbjct: 36 VHWFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 94 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + + Sbjct: 95 SLKKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREV 150 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + S I+ + +ALI ++ + + L G T Sbjct: 151 GITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAEVTITPQMLNGATT 210 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + ++ P++ GE AL L + + K + R Sbjct: 211 PITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLERKAWVASFGRPKMT 270 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + + S +++WREF+ Sbjct: 271 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 328 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TG+P IDA M QL GW+H+ R Sbjct: 329 ATRNPNFDRME-GNPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQLREEGWIHHLSR 387 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 388 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWFSCSSFF-QQFFHCYCPVR 446 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YP+P+VDH KA Sbjct: 447 FGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKAS 506 Query: 468 HHTLNQYYAAK 478 + + Sbjct: 507 QINIERIKQVY 517 >gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 21/478 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 5 LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 64 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183 I D +L P IL+ + Y VY PF K + + + Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ S +P F GE A+ L++FC + Y QR+ PA GT Sbjct: 180 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 239 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L G + RQ W + ++ W EL WREFY+H + +PS+ Sbjct: 240 SGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 299 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR RMI ASFL Sbjct: 300 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFL 358 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 359 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 417 Query: 422 GTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V P I + +++ YP PIV+H Y K Sbjct: 418 ATYIKRWLPELRHVHPKDLISGEITPIER----RGYPAPIVNHNLRQKQFKALYNQLK 471 >gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio] Length = 598 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 117/494 (23%), Positives = 197/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN AL A + +D V V+I P + + F+ SL + Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + VT+L + E RD + K Q Sbjct: 64 TSLRKLNSRLSVVR----GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +S P I+ + +A++ L + ++ Sbjct: 120 YGVETVVRNSHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCR 179 Query: 189 TPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235 T + Y +++ ++ GE AL L K K + +R Sbjct: 180 TQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFERPRI 239 Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + L++ F+ L + S +L+WREF+ Sbjct: 240 SGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPL-SLFGQLLWREFFYT 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ + P +I W+ + L W +G TGFP IDA M QL GW+H+ Sbjct: 299 AGTNNPNFDHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 358 RHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPV 416 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 G+R DP G +IR ++P+L + P +YI+ P + + + ++YP P+++H ++ Sbjct: 417 GFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHAES 476 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 477 SRLNIERMKQVYQQ 490 >gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei] Length = 591 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 196/494 (39%), Gaps = 31/494 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN +L AA + V V+I P + + F+ SL + Sbjct: 22 SVHWFRKGLRLHDNPSLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 80 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128 SL + + + + VT+L + E RD +++ + Sbjct: 81 TSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 136 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V + + L I++ Q + +A+I + + V + ++ Sbjct: 137 AGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESCR 196 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 Y +++ ++ GE AL L K + K + +R Sbjct: 197 AEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 256 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LS R + RL + + + S +L+WREF+ Sbjct: 257 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYT 315 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 316 AATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 374 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A F + DL V W G F LLD D + N G W W + + +F + P Sbjct: 375 RHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPV 433 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G+R DP G +IR +LP+L P++YI+ P + + + + ++YP P+V+H + Sbjct: 434 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAET 493 Query: 467 CHHTLNQYYAAKKQ 480 + + +Q Sbjct: 494 SRLNIERMKQIYQQ 507 >gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 534 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 148/449 (32%), Positives = 212/449 (47%), Gaps = 16/449 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S LVW R DLR DN AL A D V VF+ + R+ FI S+ Sbjct: 6 STGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQESVTA 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126 ++ SL + D + + Q + +F R YE V RD + ++ Sbjct: 65 LESSLQALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAVQQQL 124 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVP 180 L D V+ +L + Y V+TP+ +A + R V Sbjct: 125 LAEGKQLVLVKDQVIFEDREVLTQTGKPYGVFTPYHRAWLARIGSELVPGHDVCRGHAVL 184 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A P + + + G A + + ++ Y E R+ P+++ Sbjct: 185 AAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFLGRMDRYSEARNFPSVK 244 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S L +L G +S R+ N + GA WL EL WR+FY ++A +P Sbjct: 245 GPSYLGVHLRFGTVSIRKLVNLALKRVRTGSE----GASVWLAELAWRDFYFQILANFPH 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 V + F P + I W + +AW +G TG+PI+DAAM QLN G+MHNRLRM+ Sbjct: 301 VAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAMAQLNQTGYMHNRLRMVA 359 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFLVK L +DWR GE+YF +L D DL++NNGGWQW AS+G D+ PYFRIFNP Q ++ Sbjct: 360 GSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGCDAQPYFRIFNPVTQSEK 419 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 FD QG FI+ +LP+L ++ + IHAP Sbjct: 420 FDGQGKFIKRYLPQLADLSDKAIHAPWLA 448 >gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 183/502 (36%), Positives = 257/502 (51%), Gaps = 41/502 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAK---------------------VIAVFIATP 45 M+ LVWLRNDLR+TD+ ALY A A+ V V TP Sbjct: 1 MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60 Query: 46 EQWRQHGISARQSHFIYASLL-----QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 EQW H SA + SL + K QKGI+ + F + L C Sbjct: 61 EQWCAHSESAAK-----QSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQS 115 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 + +++ + +E +RD +E+ L + L+ +LN+ +KV+TP Sbjct: 116 LKCESIWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTP 175 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQN 214 + + I+ L S P + G N + + D ++P + Sbjct: 176 YYRRWIEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAH 235 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 L FC K Y R+IP+ GTS LSPYL++G + PR+ + + + Sbjct: 236 IKETLDSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELL-SALKNGYQIREEG 294 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 WL EL WR+FY+ LM +P + M + F P TE+I W+K+ QAW G TGFP Sbjct: 295 YWADSIWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFP 354 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMRQLN GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW Sbjct: 355 IVDAAMRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQW 414 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 +ASTG D+VPYFR+FNPT Q + +D G FIR ++PEL+ + + IH+P + Sbjct: 415 SASTGCDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSP---SVSHRQQC 471 Query: 455 NYPLPIVDHKKACHHTLNQYYA 476 YP PI+D+K A H ++ + Sbjct: 472 RYPEPIIDYKSARKHAIDAFAE 493 >gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa] gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa] Length = 540 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 192/498 (38%), Gaps = 37/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60 ++W R LRI DN AL A SD V VF+ P + F Sbjct: 8 SIIWFRKGLRIHDNPALEYASKGSDF-VYPVFVIDPHYMEPDPKAFSPGSRLAGLNRIRF 66 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + SL + G + + + L + V KL + + + D Sbjct: 67 LLESLVDLDTSLKKLGSRLLILR----GEPGQVLTRCLKEWGVKKLCFEYDTDPHYQALD 122 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---- 175 +++ I S P I+ + L A Sbjct: 123 IRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPSWASSPLLTS 182 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKV 227 +P + G S +P D + I+ + + I K Sbjct: 183 ISSLPPVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLKESISDKEWVANF 242 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 T+ LSPYL G LS R + L++ + ++ S +L+W Sbjct: 243 EKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQKHTSPPV-SLAGQLLW 301 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+F+ + P+ + ++I WN D LL AW++ TG+P IDA M QL G Sbjct: 302 RDFFYTVAFGTPNFDRME-GNKLCKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 WMH+ R A FL + DL + W G + F L+D D A NNG W W + + Y Sbjct: 361 WMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YN 419 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 RI++P GK++DP G +IRH+LP L ++P +YI+ P + K + +YP P+ Sbjct: 420 RIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCIIGRDYPKPV 479 Query: 461 VDHKKACHHTLNQYYAAK 478 V H A + A Sbjct: 480 VYHDSASKECKRKLAEAY 497 >gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9] Length = 479 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 161/478 (33%), Positives = 225/478 (47%), Gaps = 18/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR +DN L A KV+ VF P Q I+ + ++ L ++ Sbjct: 6 LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G D+ + + + +F+N E RD+ + L+ R Sbjct: 65 LYLQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 120 Query: 131 VICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + P +IL+ Y VYTPF K + L Sbjct: 121 GIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTAREE 180 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + + GE A L F + Y E+R+ PAI G Sbjct: 181 EIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 240 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP L GV+ R W + +E + +G +W EL WREFY+H M +P Sbjct: 241 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + G + + W+ + Q+W +G TG+PI+DAAMRQLN GWMHNR RMI ASF Sbjct: 301 LAEG-AYRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 359 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D P RIFNP+ Q ++FD Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDG 418 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IRHW+ EL +V T+Y+ + L YP PIVDHKK Y K Sbjct: 419 DGEYIRHWVGELASVDTEYLIG-GNITPLERQGLGYPPPIVDHKKQQALFKQLYQQQK 475 >gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus] Length = 618 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W+R LR+ DN+AL +D V+I P + + F+ L Sbjct: 1 MGVNAVHWVRQGLRLPDNRALREVIQGADTA-RCVYILDPSFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + +TKL E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 + TP + +++ ++P GE AL L + + K + + Sbjct: 176 SKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + +NYP P+V+ Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKPMVN 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HTEASRLNIERMKQIYQQ 490 >gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 483 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 125/485 (25%), Positives = 202/485 (41%), Gaps = 33/485 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62 S LVW+RNDLR+ D+ L A + D +VI V+ P + +S+ ++ F+ Sbjct: 3 STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++ S+ G + L Q ++ ++ E + Sbjct: 62 ESVQDLRDSVQDLGADLVVR----GGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETA 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVP 180 +E L+ F L + KVYT FRKA+ + P Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYYV 231 + L + P +IP + F + G + + + + Y Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237 Query: 232 EQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 R+ +++ S +L+ G ++PRQ ++ + + ELIWR+F Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNK--STYWMKFELIWRDF 295 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + ++ I + +W + W G TG P +DA MR+LN G+M Sbjct: 296 FSYVTWKAGERLFRPGGINGNDI-DWRYYDKSFERWAAGTTGIPFVDANMRELNRTGYMS 354 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R AS L + L +DWR+G YF S+L+D D+ASN G W + + GND P R FN Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 Q KR+D G ++R+WLPEL +VP +Y+H P+ + L +YP P+VD Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQKKYGCVLGADYPKPVVDLD 472 Query: 465 KACHH 469 K Sbjct: 473 KTYQR 477 >gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301] gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301] Length = 484 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 160/477 (33%), Positives = 224/477 (46%), Gaps = 19/477 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR++DN L AA A++I +F P+ + ++ + ++ L ++Q+ Sbjct: 6 LFWHRRDLRLSDNIGL-AAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G Q D + Q + +++N+ E RD + L+ Sbjct: 65 RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183 I D +L P IL+ + Y VY PF K + + + Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+ S +P F GE A+ L++FC + Y QR+ PA GT Sbjct: 181 AIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSP L G + RQ W + ++ W EL WREFY+H + +PS+ Sbjct: 241 SGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ ++ W L AW Q TG+PI+DAAMRQL GWMHNR MI ASFL Sbjct: 301 ADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDL++DWR GE++FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q K+FD Sbjct: 360 TKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 T+I+ WLPEL +V + + S YP PIV+H Y K Sbjct: 419 ATYIKRWLPELRHVHPKDL---ISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLK 472 >gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 467 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 150/476 (31%), Positives = 237/476 (49%), Gaps = 28/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+D R+ DN A+ AA + + VI +I + + ++ SLL + + Sbjct: 8 LIWFRHDFRLRDNAAVTAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +KG + D+ + + Q KLF+NR+Y+ D++L+K ++ Sbjct: 64 QLKEKGGQLHLFE----GDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +SF +++L P ++ N Q +++++ + +A+ + + + P + T + Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQAVLPCPENWVFSTREIR 179 Query: 190 PSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + GE A L+ F + + +Y ++RD PA Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LS +L G +S +Q W+ + + G +L EL WREF ++ +P Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTKNGSGE------GTSKFLAELGWREFAWSVLWEHPD 293 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P +K+ W K S LQ WK+G TG+P IDA MR L G+M NRLRM+TASF Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE++F L+D D A N WQW A +G +S PYFRI NP +Q ++FDP Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G +IR W+ EL +V T +IH P + NYPLPI+ H++ L + Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWKADKQ---PANYPLPIIAHEEGRDRALRAWKE 465 >gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110] Length = 486 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 121/488 (24%), Positives = 214/488 (43%), Gaps = 31/488 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLRI D++ LY D VI + Q++ + F+ S+ Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDL-VIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + + + + + ++++ + E + +K +++ Sbjct: 66 ANLRQSLQDLGSDLIVRK----GYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQ 121 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + Q+ +V+T FRK + +N P + L Sbjct: 122 ALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSL 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRD- 235 V NIP + + D + + + Y E R+ Sbjct: 182 PD-VEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYKETRNG 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + +S+ SP+L+ G LSPR + +++ + + + + EL+WR+++R + Sbjct: 241 MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERVKNN--STYWLIFELLWRDYFRFIC 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A + + K + + W +D W++G TG+P++DA MR++ G+M NR R Sbjct: 299 AKHGNKIFYKSGLQGLDI-PWKEDQDRFILWQEGKTGYPLVDANMREIAATGFMSNRGRQ 357 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469 K +D +G ++RHWLPEL +P IH P + ++YP P+VD K+ Sbjct: 417 KDYDSKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPKPVVDFFKSVKA 476 Query: 470 TLNQYYAA 477 Y +A Sbjct: 477 NEKVYNSA 484 >gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera] Length = 538 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 127/497 (25%), Positives = 190/497 (38%), Gaps = 34/497 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60 L+W R LRI DN AL A S+ V VF+ P + F Sbjct: 7 SLMWFRKGLRIHDNPALQHAAKESN-CVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 65 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFY------- 108 + SL+ + SL Q G + + I L C + + Sbjct: 66 LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKVK 125 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N + I + L S L A Q +P L Sbjct: 126 NYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTTLSWL 185 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 D+ + + + + I + PF+ + ++ I K Sbjct: 186 PPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESE--ALKRLRESIRDKEWVANFE 243 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 T+ LSPYL G LS R + L + + ++ S S + +L+WR Sbjct: 244 KPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMK-WHTSPPVSLVGQLLWR 302 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F+ + P+ K ++I WN D LL AW++ TG+P IDA M QL GW Sbjct: 303 DFFYTVGFGTPNFDRMK-GNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGW 361 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 MH+ R A FL + DL V W G + F L+D D A NNG W W + + Y R Sbjct: 362 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YNR 420 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 I++P GK++DP G +IRH+LP L ++P +YI+ P + K + +YP P+V Sbjct: 421 IYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVV 480 Query: 462 DHKKACHHTLNQYYAAK 478 H A + A Sbjct: 481 CHDSAIKECKRKLAEAY 497 >gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8] Length = 587 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 158/515 (30%), Positives = 247/515 (47%), Gaps = 52/515 (10%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R D+RI DN+AL A + ++A+++ +P+ + H AR+ F+ +L Sbjct: 72 VYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLR 131 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125 ++ L + I + + S KL+ N +YE++E R ++ E Sbjct: 132 IIKIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAHKLYANIEYEVDELRRDIQVCEI 191 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + D ++ PG + Y VY+PF++ + L + R L Sbjct: 192 AKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPAA 251 Query: 186 GPVTPSNIPRF-----------------FDYPFQAIDPMFPIG----------------- 211 + + + + + +P G Sbjct: 252 NSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKSR 311 Query: 212 -------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + +++ Y ++RD TS++SPYL+ GV+S R+C Sbjct: 312 PEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRSTM 371 Query: 265 EEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSH 321 + + +G W+ EL WR+FY ++ +P V MG+PFI + + D Sbjct: 372 KLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDIS 431 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 ++AWK+G TG+PI+DA MR + GW+HNRLRM TA FLVKDL+VDWR+GE Y+M L+ Sbjct: 432 EVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNLI 491 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 DGDLASNNGGWQW+ASTG D PYFRIFNP +Q ++ DP+G FIR +LPEL ++ + IH Sbjct: 492 DGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEIH 551 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 P L YPLPIV H +A + ++ A Sbjct: 552 NP---PANVAKRLGYPLPIVKHSEAKDRAIRRFKA 583 >gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii 23-P] Length = 434 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 202/472 (42%), Gaps = 45/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V++ W R DLR+ DN Y A S+ V+ +FI + + + +FIY +L Sbjct: 4 AVNIFWFRRDLRLDDNVGFYNALK-SEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62 Query: 68 VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G + + + + +F NR YE RD ++ Sbjct: 63 MRAILEKKHGSSIAMLH----GNPSAIFEKLISEYSIHTVFTNRDYEPYATERDNKIQAL 118 Query: 127 LQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I + ++ YKVYTPF K + +L + Sbjct: 119 LSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSFLEN 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + Y E R+ PA+ TS+L Sbjct: 179 LIQNTELPNLHLSDIGFEVAKQK--------IKKHTVTPKLIQTYEETRNFPALDSTSRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ + E + + ELIWREF+ ++ +P Sbjct: 231 GPHLRFGTVSVRKMMEKAISEKNE----------IFWQELIWREFFMQILWHFPYTSK-N 279 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++IEW + W QG TG+P++DA MRQLN G+MHNR+RM+ SFL K L Sbjct: 280 SFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHL 339 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD +I Sbjct: 340 LIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKDLAYI 399 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + W+P + Y +VDHK+A L+ Y A Sbjct: 400 KKWVPNFQEL-------------------TYAKEMVDHKEARERCLSTYKEA 432 >gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 465 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 174/472 (36%), Positives = 254/472 (53%), Gaps = 17/472 (3%) Query: 9 VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 LVW RNDLR++D++AL+ A V A+F + QWR HG + +++L Sbjct: 2 TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L++ GI S + + E + +YC ++T + Y+ + NE+RRD + + Sbjct: 62 QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +L V + D + P L Q+YKV+T ++K+L++ + L R Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFS---IDHLATFPPRKA 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 GP + D P P+ E AL L E+V Y ++RD PA GTSQL Sbjct: 179 GPALKVSPLAMKDLPNWQNPLQLPVTEDQALTRLD-AFCEEVRDYADRRDFPADNGTSQL 237 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++G S RQ + L + L ++ +E+IWR+FY++L+ P +C+G+ Sbjct: 238 SAALALGCTSSRQVAHTLHRHHISLAS------DTFFSEIIWRDFYKYLLFHTPRLCLGE 291 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P+ + W K+ L+ W++G TG PI+DAAMRQL GWMHNRLRM+T +LVK L Sbjct: 292 PYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYLVKIL 351 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 DWR GE +F L D D A+NNGGWQW ASTG D+VPYFRIFNP Q KRFDP G FI Sbjct: 352 QQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPNGQFI 411 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ ELN+V +H L + YP P+ D+ KA TL+++ A Sbjct: 412 LTFVTELNDVKPALLHDHKRALSVSS----YPKPLTDYSKARQDTLDKFKAL 459 >gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301] Length = 528 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 104/490 (21%), Positives = 179/490 (36%), Gaps = 34/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLRI D+ AL+ AC +V+ +F W + + F+ L+ +++ Sbjct: 7 IVWFKRDLRIQDHAALFEACEL--GQVLPIFTWDSSVWNGGDYATQHQMFVEECLVSLRR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G+ IE L+ + R+ L + + N + Sbjct: 65 NLQTIGLSLL----EVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDK----AVAS 116 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + P ++ + K + + ++ L + P Sbjct: 117 WCKAQNVNWHEYPHNGVVRRLKNRDIWTAVWEKRMSAQTMPLPTQAKMA---TLPLDILP 173 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPY 248 +N Y G + A +L F + Y P + S+LSPY Sbjct: 174 NNDVSHLRYTQADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAGSRLSPY 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVLS R+ L+++ + P + L L E H + +P I Sbjct: 234 LAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKLESEPAI 293 Query: 309 PWTEKIEWNKDSHLL-----------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + AWK G TG+P++DA M L GW++ R+R + Sbjct: 294 EYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINFRMRAML 353 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 S L + WR + + LD + + Q +G + RI+NP Q K Sbjct: 354 MSTASYLLWLHWRETGLHLAREFLDYEPGIHWS--QVQMQSGTTGINTLRIYNPVKQAKD 411 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471 DP+G F+R WLP L NVP +I P + + ++YP P+V+ +A Sbjct: 412 QDPEGIFVRRWLPALRNVPNTWIFQPWLMPESLQLEYGCRIGIDYPAPLVNIDQAFKLAK 471 Query: 472 NQYYAAKKQS 481 ++ + S Sbjct: 472 TKFSQLRMNS 481 >gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii] Length = 1008 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 214/472 (45%), Gaps = 23/472 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ D A + VI VFI PE+ Q + SL+ Sbjct: 6 KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q++L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 65 LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183 + + + P +L+ Q Y + F ++ V +PA+ Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181 Query: 184 LTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +F P + + G A+ L F E++ + R Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS+LSP++ IG +S R + + + E++ +L ++ +RE+ R+L Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R+ Sbjct: 302 FHFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +RFDP G ++R WLP L+ +PT+YIHAP +L NYPLPI+ Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472 >gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii] Length = 1008 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 214/472 (45%), Gaps = 23/472 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R DLR+ D A + VI VFI PE+ Q + SL+ Sbjct: 6 KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q++L+ G + + DS L + +F+N Y+ + RD ++ L Sbjct: 65 LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIR 183 + + + P +L+ Q Y + F ++ V +PA+ Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181 Query: 184 LTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P +F P + + G A+ L F E++ + R Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241 Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS+LSP++ IG +S R + + + E++ +L ++ +RE+ R+L Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W D H +AW+QG TG+PI+DAAMRQL + GW HNR R+ Sbjct: 302 FHFP-FIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFLVKDLL+ W+ G +++ +D DL + GWQ+ + +D+ P+ + + + Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +RFDP G ++R WLP L+ +PT+YIHAP +L NYPLPI+ Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472 >gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair defective 3 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 556 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 127/503 (25%), Positives = 194/503 (38%), Gaps = 33/503 (6%) Query: 5 TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52 T+M+ L+W R LR+ DN AL A S+ VF+ P Sbjct: 18 TSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSR 76 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLF 107 + F+ SL + SL + G + + + L C + + Sbjct: 77 AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYY 136 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ + +E + + G KV A + Sbjct: 137 QALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSE 196 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 ++ L PS + QA F GE AL L K +K Sbjct: 197 LVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA 256 Query: 228 YYYVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + ++ T+ +SPYL G LS R + L+ + D+ S L Sbjct: 257 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLL 315 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA M Q Sbjct: 316 GQLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQ 374 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GWMH+ R A FL + DL + W G + F L+D D A NNG W W + + Sbjct: 375 LLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFF 434 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 + RI++P GK++DP G +IRH+LP L ++P QYI+ P + + + Sbjct: 435 YQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKD 493 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YP P+V H A + A Sbjct: 494 YPKPMVLHDSASKECKRKMGEAY 516 >gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum] Length = 650 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 125/490 (25%), Positives = 215/490 (43%), Gaps = 29/490 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN A D V+ VFI P + + ++ SL + + Sbjct: 8 VVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLLEKRLQH 129 SL G + ++ L T++ + + I+ VR DK+ + L Sbjct: 66 SLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELLGL 122 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +SF+ +L P + + + + + + ++ + P + ++G Sbjct: 123 GISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGIEN 182 Query: 190 PS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + G +NA L F + Y + R A Sbjct: 183 ICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVAGT 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLMA 296 TS SPYL G +S R+ + ++ + + + KSGA N + RE+ R+L Sbjct: 243 TTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYLCF 302 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 303 NFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 361 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + W G +YF LLD D+ S+ GWQ+ + + D R+ NP +QG+ Sbjct: 362 VSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQ 421 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH-- 468 ++DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 422 KYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECL 481 Query: 469 -HTLNQYYAA 477 ++ + Sbjct: 482 DDAISTMWQL 491 >gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca] gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39] Length = 490 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 119/487 (24%), Positives = 222/487 (45%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 ++W RNDLR+ D++ L A ++ ++I ++ P Q+ + F+ S+ Sbjct: 9 ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ + + G + + Q + ++Y+++ E+ + LEK Sbjct: 68 ADLRHNFQKIGSNLLVR----IGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEK 123 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSLPV 179 L + KSF + L + ++ +++T FRK + Q + Sbjct: 124 ALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQF 183 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-I 236 P I T + + + F GE + + ++ + Y + R+ + Sbjct: 184 PDIEPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNGM 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G LSPR + ++++ + + + EL+WR+++R + Sbjct: 244 LGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRVKND--STYWLVFELLWRDYFRFICL 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + K + + W ++ Q W QG TGFP++DA MR+L G+M NR R Sbjct: 302 KHGPKVFYKSGLQGVKI-PWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNRGRQN 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Q + Sbjct: 361 VASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQSQ 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHT 470 +DP G +++HWLPEL ++P +H+P ++ + ++YP P+VD +++ Sbjct: 420 DYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQESVEAN 479 Query: 471 LNQYYAA 477 Y A Sbjct: 480 RRIYEKA 486 >gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae] Length = 514 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 117/499 (23%), Positives = 194/499 (38%), Gaps = 32/499 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACH-NSDAKVI-AVFIATPEQWRQHGISARQSHFIYAS 64 M + W R LR+ DN +L A V V++ P + + F+ Sbjct: 1 MKSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWRFLLQC 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + SL + + + + +V+ L + E RD + Sbjct: 61 LEDLDASLRKLNSRLYVIR----GQPTDVFPRLFKEWKVSCLSFEEDSEPFGRERDMAVM 116 Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 K + + S I++ + +A++ + D + A Sbjct: 117 KLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSITAST 176 Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVE 232 + TP + +++ ++P GE AL L + + K + Sbjct: 177 VDNLTTPIRDDHDEKFGVPSLEELGFDTDNLNPVVWPGGETEALTRLERHLERKAWVASF 236 Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +R + LSPYL G LSPR + +L E + + S +L+WR Sbjct: 237 ERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLTELYKKVKRSNHPPL-SLYGQLLWR 295 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF+ P+ +I W+K+ L W +G TGFP IDA M QL GW Sbjct: 296 EFFYTAATNNPNFDKM-VNNTICVQIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGW 354 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 355 IHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFH 413 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461 ++ P G+R DP G FIR +LP+L P +YI+ P + + K + +YPLP+V Sbjct: 414 VYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMV 473 Query: 462 DHKKACHHTLNQYYAAKKQ 480 +H + + + +Q Sbjct: 474 NHAETSRINVERMKQVYQQ 492 >gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92] Length = 468 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 181/475 (38%), Positives = 261/475 (54%), Gaps = 16/475 (3%) Query: 9 VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVW RNDLR D+ ALY AC N+ V+ V I TP QW+ S + F A+L Sbjct: 1 MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L I + + + L + +V+ +++NR+Y + E +RD + + Sbjct: 61 LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + C SFD V+LP G++LN +KV+TPF K Q + ++ + LPVP ++ Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180 Query: 187 PVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ ++P+ YP +P G + A +L+ + EKV Y + RD PA GT Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPYLS+GVLS RQC ++ F P+ W+ ELIWREFYRHL+ +P + Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYFDQ----PEWFDSQWVTELIWREFYRHLLVLFPEMN 296 Query: 303 MGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 +PF P E+ + QAW +G TGF I+DA M++L GWMHNR+RMITASFL Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L DWR+G +FM L+DGD ASN GGWQW+AS G D+ PYFRIFNP Q +RFD + Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 G ++ ++P L + + H P + P PI+D+ ++L+ Y A Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMFAASYSR-----PTPIIDYAYERQYSLDAYKA 466 >gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] Length = 382 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 203/384 (52%), Positives = 268/384 (69%), Gaps = 3/384 (0%) Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 C + R+T LFYN QYE+NE RD E+ L++ +C+ FDDSV+LPPG+++ +MYKV Sbjct: 2 CAENRITHLFYNYQYEVNERARDVQAERTLRNV-VCEGFDDSVILPPGAVMTGNHEMYKV 60 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 +TPF+ A ++ L + + P +R +G + P+ FP+ E+ A+ Sbjct: 61 FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEEKAAIA 120 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E +L Sbjct: 121 QLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS 180 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 WLNELIWREFYRHLM +YPS+C +PFI WT++++W + L+AW++G TG+PI+D Sbjct: 181 V--WLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVD 238 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS Sbjct: 239 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 298 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 TG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L+YP Sbjct: 299 TGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYP 358 Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481 PIVDHK+A TL Y A+K + Sbjct: 359 QPIVDHKEARLRTLAAYEEARKGA 382 >gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 442 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 207/473 (43%), Gaps = 33/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+ D+ AL AA + + V+A F+ P Q R+ F+ SL Sbjct: 1 MP-ALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + +V + + + + + RRD + Sbjct: 56 VLRDELDGRLLV-------TRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAA 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G + Y+V+TPF + + ++ A L Sbjct: 109 LASVPLVATGSPYLVAP-GRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDP 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P GE A + + F + Y + R P I+GTS++S Sbjct: 168 ARLGITACEI---PDPGATLDLAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 ++ G + PR L +GA ++L EL +R+FY ++ P+ Sbjct: 225 AHVKFGTIHPRTLVADL--------DLRAAGARTYLRELAFRDFYADVLHHRPASAWRNW 276 Query: 307 F--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 ++ +AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKD Sbjct: 277 NSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKD 336 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL+DGDLA+N GWQW A G D+ PYFR+FNP QG++FDP G + Sbjct: 337 LHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDY 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL ++ + Y PIVDH L +Y + Sbjct: 397 IRRWVPELRCADDPHL-------RTGERPPGYLAPIVDHATERAEALRRYRSM 442 >gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii] Length = 623 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 195/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +T+L Y E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + + + + A + Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS + + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTTATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + ++YP P+V Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKCIIGVHYPKPMVH 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 656 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 124/489 (25%), Positives = 213/489 (43%), Gaps = 27/489 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN A D V+ VFI P + + ++ SL + K Sbjct: 8 VVWFRKDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLAK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + D++ L + ++ + I+ VR DK+ + L Sbjct: 66 SLEALGCPLVLIRAQTTLDAL--LQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLGLG 123 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +SF+ +L P I + + + + + ++ ++ P + ++G Sbjct: 124 ISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIENL 183 Query: 191 S---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + G +NA L F + Y + A Sbjct: 184 CTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAGTT 243 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSPYL G +S R+ + ++ + + + +L + RE+ R+L Sbjct: 244 TSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLCFN 303 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 304 FP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIV 362 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG++ Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQK 422 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH--- 468 +DP G ++R W+PEL +P ++IH P +L NYP+PIV+ A Sbjct: 423 YDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLD 482 Query: 469 HTLNQYYAA 477 ++ + Sbjct: 483 DAISTMWQL 491 >gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247] Length = 434 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 205/470 (43%), Gaps = 43/470 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++WLR DLR+ D L AA ++ +V+ F+ P + R+ F++ SL ++ Sbjct: 6 SILWLRRDLRLGDLPPLSAAA--ANGRVLVCFVVDPRLEKSS--GERRLAFLFDSLRELD 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G + + + + RRD + + L Sbjct: 62 TKL---GGRLLV----VSGRPDVEIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEALGE 114 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++ P G I YKV+TP+ + + + + L Sbjct: 115 IPLESVGSPYLVSP-GRITKSDGDPYKVFTPYFRQWCDHGWRKPASTAAEDLNAL--DPG 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P + P GE+ A +F + + Y R+ P + +S++S YL Sbjct: 172 DIRRSGRIRIPAAPVKLDLPAGEEAARERWSEFVVDDLDDYESGRNRPDLDVSSRMSAYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G + PR L A ++L EL +R+FY ++ +P Sbjct: 232 KFGNIHPRTMAADL--------DFRNPSAAAYLRELAFRDFYADVLYHWPESAWHNWNRG 283 Query: 310 WTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + + AW+ G TGFPI+DA MRQL IG+MHNR+RMITASFLVKDL + Sbjct: 284 FDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNRVRMITASFLVKDLHL 343 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W G +F+ QL+DGD+ASN GWQWAA TG D+ PYFR+FNPT Q +FDP G +IR Sbjct: 344 PWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPTTQADKFDPDGEYIRR 403 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PE + +YP PIVDHK L +Y A Sbjct: 404 WIPEYG-------------------TDDYPQPIVDHKAEREEALRRYRAL 434 >gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237] Length = 436 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 205/472 (43%), Gaps = 43/472 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN LY A D V+ +FI E + FI+ L Sbjct: 4 KISIFWFRRDLRLEDNVGLYQALK-GDYPVLPIFIFDKEILENLPKDDARVSFIFEQLES 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L + + E S V ++ N YE RD ++ L Sbjct: 63 MRNTLQE---EVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDYL 119 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S+ D V+ G +L Y VYTP++ Sbjct: 120 KDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFDAKKDLETYNTKKYFKN 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQL 245 + S +P + + + Y + R+ P GTS+L Sbjct: 180 FIAHSRLPNLSLSDMGFETSKIKV-------PNYSAGSKVIQNYEDTRNYPAIENGTSRL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 P+L G +S R+ R E ++ + +ELIWREF+ ++ +P Sbjct: 233 GPHLRFGSVSIREITKRAIAEKNEV----------FWSELIWREFFMQILWHFPHTTK-N 281 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F P ++IEW + + WK G TG+ ++DA MR+LNT G+MHNR+RM+ ASFL K L Sbjct: 282 AFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVASFLCKHL 341 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q +FD Q +I Sbjct: 342 LIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYI 401 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+ +L + YP +VDHK A L Y A Sbjct: 402 NTWVSDLQELS-------------------YPDKMVDHKMARERCLKTYKEA 434 >gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Jannaschia sp. CCS1] Length = 517 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 108/467 (23%), Positives = 166/467 (35%), Gaps = 28/467 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LV + DLR+ DN AL A A + VF+A PE W Q SARQ F+ SL Sbjct: 1 MKNVLVLFKRDLRVQDNPALALAASRDGAA-LPVFVAEPEAWAQPDASARQWRFVAESLE 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ G + D + L C V ++ + Sbjct: 60 GLRADLAALGAPLIVRR----GDMMAVLGGLCATHDVGEIISIEETGNLWSYGRDRRLAA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LT 185 + + ++ A + V + +R ++ Sbjct: 116 ----------WARGAGVIWTEVPQLGVQRRLVNRDGWARDRQAVMRQAQVPVPEGLRGVS 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243 R F G L L F + Y P S Sbjct: 166 EEPGSIPDARDLALAFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +LSP+L+ G LS R+ + + ++ S+ + WR+ + + P+ Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEVKGTRDGWLGSLRSFEARVAWRDHFMQKLEDQPA 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + D+ L AW++G TG P +DA MR L GW++ R+R + A+ Sbjct: 286 MEIRCLHSAYEDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFRMRAMLAAV 345 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L +DWR + D + + Q G + RI+NP QG DP Sbjct: 346 ASYHLWLDWRRTGPHLARMFTDYEPGIHWP--QMQMQAGTTGMNTIRIYNPVKQGLDHDP 403 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVD 462 GTF R W PEL VP + P +W L YP PIVD Sbjct: 404 TGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIVD 450 >gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC 49957] Length = 477 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 30/474 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+WLR DLR D+ AL+A V+ VF+ +++ SL Sbjct: 8 ALLWLRQDLRTADHPALHAVA---GQPVLPVFVLDES--DPWAPGGAARWWLHHSL---- 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K+L +K + + + ++ +R YE +RD + K L+ Sbjct: 59 KALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEG 118 Query: 130 RVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L P + + Y VYTPF +A++ P P Sbjct: 119 QGRRLCLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLALGDPPPPIPAPDRLRAAPPPR 178 Query: 189 TPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + GE A LR F + Y RD+P Sbjct: 179 EGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGEDR 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T++LSP+L G +SPRQ W + E G +WL E++WREF H + P + Sbjct: 239 TARLSPHLHWGEVSPRQAWQAVAE------GGKSGGHITWLKEILWREFAYHTLWHRPEL 292 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P P + W D LLQAW++G TG+PI+DA +RQL GWMHNR+RM+ S L Sbjct: 293 PD-TPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGSLL 351 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL W+ G +F L+D DLA+N+ WQW A +G D+ PYFRIFNP +QG++FDP+ Sbjct: 352 VKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFDPE 411 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469 G ++RH++PEL +P ++H P L +YP PIVDH+ Sbjct: 412 GRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRKR 465 >gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar] Length = 523 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 127/495 (25%), Positives = 204/495 (41%), Gaps = 33/495 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL AA + ++ VF+ P I + F+ +L + Sbjct: 6 IHWFRKGLRLHDNPALVAALRDCK-EIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDC 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + E + +VT+L Y E +RRDK + + + Sbjct: 65 SLRKLNSRLFVVR----GKTDEVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEH 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + S L + T R + + + R +P P V Sbjct: 121 GVEIIYKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKDVKT 180 Query: 191 SNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P + +FP GEQ AL L + K + ++ + Sbjct: 181 PCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKPQTS 240 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 T+ LSPY++ G LS R W L + + S +L+WREF+ Sbjct: 241 PNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGKK--HSQPPVSLHGQLLWREFFYTA 298 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +++W+ + L AW + TGFP IDA M QL GW+H+ R Sbjct: 299 GLGIPNFDKME-GNPVCTQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIHHLAR 357 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G++ F LLDGD + N G WQW +++ +FR+++P Sbjct: 358 HAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQWLSAS-TFFHQFFRVYSPIA 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 GK+ D G +I+ +LP L P QYI+ P + +YP PIV+H+ Sbjct: 417 FGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVEHEVIS 476 Query: 468 HHTLNQYYAAK-KQS 481 + + AA K+S Sbjct: 477 KKNIQRMKAAYAKRS 491 >gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 488 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 106/481 (22%), Positives = 174/481 (36%), Gaps = 22/481 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWL+ DLR+ D+ AL AA S V+ ++ PE + R F++ SL + Sbjct: 3 AVVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMH 61 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + D E ++++ ++ + + + L Sbjct: 62 RRLEAHPRSLRVLH----GDPREIFRVLADEEQLHSVYSYEETGLEKTFARDRELAALFQ 117 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + N K + S + Sbjct: 118 ERSIPWKEFPSNGVQRGRKNRKGWNRKWTAQMSAPCHDVDHRLIRGSFACEERLAAFHLR 177 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 + GE A L F + + Y P + S+LSP Sbjct: 178 DLPGS-----WRSPDNQFQSGGESEAWQTLNDFLERRSPAYARNISKPLASRSSCSRLSP 232 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L+ G LS RQ + L+ + ++ + L W + + + Sbjct: 233 FLAWGNLSIRQVYQALRAAQKERGSSR--ALQAFESRLHWHCHFIQKFEMECRMEH-EDI 289 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++D L +AW +G TG+P+IDA+MR L G+++ R R + SFL L Sbjct: 290 NRGYLHHPRSRDDALARAWAEGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHHLWQ 349 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+G + S LD + + Q A G + RI+NP Q + DP G FIR Sbjct: 350 DWRVGAAHLASLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEEHDPDGAFIRQ 407 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 W+PEL VPT IH P L S Y P+VD ++ ++ +A K + Sbjct: 408 WVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPVVDVRETYRSARDRLWALKDDPV 467 Query: 483 L 483 + Sbjct: 468 V 468 >gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C] Length = 475 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 148/487 (30%), Positives = 229/487 (47%), Gaps = 32/487 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 +VWLR +LR+ DNK+ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + ++ + ++ ++ + YE N + RDK +++ Sbjct: 62 LINDELKKLKGKLLVF----YGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D +L+ P +L + YKVYTP+ +A + + S + Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177 Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKV----------YYY 230 + + + IG L + + Y Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +D + GTS +SPYL G++S R+C+ + + G+ +W+NELIWREF Sbjct: 238 KIDQDFLYLDGTSTISPYLRFGLVSIRECYRKAFNAASN------PGSITWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QGK FDP +I+ +LP L NV IH ++ + + NYP PIVD+ + Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467 Query: 471 LNQYYAA 477 + + Sbjct: 468 IEVFKGI 474 >gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio] gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio] gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + + +L Y E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + + + + A + Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio] gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio] Length = 619 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + + +L Y E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + + + + A + Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4] Length = 493 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 101/483 (20%), Positives = 185/483 (38%), Gaps = 26/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++L+WL+ DLR+TD+ AL A +S + +++ P S R F++ SL Sbjct: 3 TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ G + ++ L + Q ++ +F +++ +N + Sbjct: 62 MNAQLADYGQHILVLS----GNVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQV--- 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + G+++ A + + + +L++ + ++ Sbjct: 115 -ANWLQAQGIPWHEFEYGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSNDTL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 P M G A L F + + Y + P+ T+ L Sbjct: 174 NCSFTPPPS---WTVRTKGMQTGGSSVAWQTLDDFFQRRGRDYYRRISSPSASRTACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L E + L + + + L W + + Sbjct: 231 SPYLAWGNISLREVYQYLLEHWQ--LAGFRRSLIALSSRLHWHCHFIQKFESECKMEFRC 288 Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + +AWK G TG P+IDA MR L+ G+++ R+R + SFL Sbjct: 289 VNQAYEALLRQACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G RI+NPT Q + D G Sbjct: 349 HMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDADGK 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VPT + P + + Y PI+D + + +A Sbjct: 407 FIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDNSAKAARERLWAW 466 Query: 478 KKQ 480 +K+ Sbjct: 467 RKR 469 >gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521] gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521] Length = 655 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 174/526 (33%), Positives = 256/526 (48%), Gaps = 61/526 (11%) Query: 11 LVWLR-NDLRITDNKALYAACHN--------SDAKVIAVFIATPEQWRQHGISARQSHFI 61 + W+R +DLRI DN+AL A +IA+F+ TP + H AR+ F+ Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L ++ + I F + S D + E + S C Q ++L N +YE++E+ R Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244 Query: 120 DKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + + + S D ++PPG I + + Y V++P+ + +++ + Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304 Query: 179 VPAIRLTGPVT---------------------PSNIPRFFDYPFQAIDPMFPIGEQNALH 217 P + F + + ++P +Q A Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364 Query: 218 ILRKFC--------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 +L F ++ Y E R++ + GTS++SPYL+ Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424 Query: 252 GVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+S R+C R K+ L + SG W E+ +R+FY H++A +P VCMG FI Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + W DS L AWKQG TG+PI+DAA RQ G++HNR RMI+A FL K LL DWR Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F +D D ASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IRH++P Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475 EL NV IH P L K + YP PIV+H +A L +Y Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRYK 650 >gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 487 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 106/488 (21%), Positives = 190/488 (38%), Gaps = 27/488 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK ++LVWL+ DLR+TD+ L AA SD + ++ P+ S R F Sbjct: 1 MKK-----INLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + L+ C D + +L+ Q ++ L+ +++ ++ + Sbjct: 55 VWQSLSDINGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQR 110 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + ++ + K + + +++ ++++ S Sbjct: 111 DKQVLKWCKDRQISWYEFANGAVVRGCKER-----KHWDKNWQRVMRAPIESNALSAGAL 165 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 L P + A + K YY+ + + Sbjct: 166 LPNLNDDFGIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASRE 225 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPYL+ G LS R+ + L + D + ++ + L W + Sbjct: 226 ACSRLSPYLAWGNLSLREVYQFLLSHWNDKG--MRRSLIAFSSRLHWHCHFIQKFESEHQ 283 Query: 301 VCMGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + ++ L AWK+G TG+P++DA MR L G+++ R+R + Sbjct: 284 MEFRCVNRGYESLIQHSAKTNNDHLTAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAMLV 343 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL L DWR G + S LD + + Q+ +G + RI+NPT Q Sbjct: 344 SFLTHHLAQDWRNGVAHLASLFLDFEPGIHYA--QFQMQSGVTGINTIRIYNPTKQAIDH 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLN 472 DP G FI+ W+PEL +VP + P L + Y PI+D A + Sbjct: 402 DPDGVFIKKWVPELKDVPISLLFEPWKMSAMEALMYDIEGSSIYLNPIIDLDTAGREARD 461 Query: 473 QYYAAKKQ 480 + +A KK+ Sbjct: 462 RLWAWKKK 469 >gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Marivirga tractuosa DSM 4126] Length = 495 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 107/482 (22%), Positives = 180/482 (37%), Gaps = 20/482 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + LVWL+ DLR+ D+ L A N I + P S R +FI SL++ Sbjct: 10 PIALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHWNFIAESLIE 68 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q LSQ + + I++L + + + LF + + + K Sbjct: 69 MQSKLSQLEMSLIQVHT----EVIDFLKAVQEKFDINYLFSHEETGLKITYERDNAVKFF 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + N Y K +I+ + L G Sbjct: 125 CENQNIEWQEFQQFGLQRGRKNRQDWSKSWYEFMSKPIIKIDLNDIKTIH---LNELPGI 181 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + ++ Y + I + + Y + A + S+LSP Sbjct: 182 ILINDSEELNIYKEKGIAQTGGTAQAYKYLNSFLSDRHFGYNKNISKPAEARKSCSRLSP 241 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL+ G +S R + + + + + L W + Sbjct: 242 YLAYGNISMRVVFQSMISAKEHGNKSALNN---FGSRLRWHCHFIQKFEMEDRYEFEN-I 297 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + I N++ L +AW++G TGFP++DA MR + G+++ R+R + SFLV L Sbjct: 298 NRGYDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFRMRAMLVSFLVYHLWQ 357 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+ G + Q LD + + +Q A G + R++NP Q K DP G FI+ Sbjct: 358 PWKRGAMHLGRQFLDFEPGIHYPQFQMQA--GVTGINTIRMYNPVKQSKEHDPNGDFIKK 415 Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W+PEL NVP +IH P +L +YP PI+D + A + +K Sbjct: 416 WVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDAGKKARKVIWEMRKDP 475 Query: 482 LL 483 + Sbjct: 476 KV 477 >gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R] Length = 543 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 174/524 (33%), Positives = 256/524 (48%), Gaps = 62/524 (11%) Query: 11 LVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R DLR DN+AL A + +IA+F+ +P + H SAR+ F +L Sbjct: 18 VYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLR 77 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL++ + + + ++ S + T+L+ N +YE++E+RRD + + Sbjct: 78 CIRSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCEL 137 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + C D ++PPG +L + Y VY+PF +A +L + + P+ Sbjct: 138 AREKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPLACAPSP 197 Query: 186 GPVTPSNIPRFFDYP--------------------FQAIDPMFPIGEQNALHILRKFCKE 225 +PS I +P GE A IL +F Sbjct: 198 AANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFVNT 257 Query: 226 KVY----------------------------YYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 Y + RD TS+LSPYL+ GV+S R Sbjct: 258 MARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVISAR 317 Query: 258 QCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYPSVCMGKPFIPW--T 311 +C + K W+ E+ WR+FY H++A +P V MG+PF + Sbjct: 318 ECIRATMQLSASKAPKVDVSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQEKLSS 377 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 K E + LQAWK G TG PI+DA MRQ +GWMHNR+RM+ A +LVKDL++DWR+ Sbjct: 378 IKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMIDWRL 437 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE++FM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Q ++ DP G +IR+++PE Sbjct: 438 GEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRYFVPE 497 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 L NV IH P L L YP P+V H +A + +Y Sbjct: 498 LANVRGADIHNPPPALAD---KLGYPRPLVKHDEARQRAIRRYK 538 >gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 491 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 113/486 (23%), Positives = 190/486 (39%), Gaps = 25/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V++VWL+ DLR++D++AL A NSD V+ ++I P S R FI+ SL Sbjct: 3 KVNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ +++E LD + LF +++ + L K Sbjct: 62 INHQLAGVNSQVFIFH----GNAVECLDKLMHHFPINALFSHQEIGLGCTFERDLNIKA- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 K G+++ A + + + L +L + +I Sbjct: 117 ---WCDKQQIQWHEFQQGAVIRGAKNRTNWDKHWNRVMRAPLYSVNLDKVNWVSISPDQL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 P + + M G AL L F + Y P T+ L Sbjct: 174 ADMLFSPPKSWC--ERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S RQ + ++ + + + + L W + P + Sbjct: 232 SPYLAWGNISLRQVYQQVLAHWNVKG--FRRSLIALSSRLHWHCHFIQKFESEPDIEFFC 289 Query: 306 PFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + L AWK+G TG P+IDA MR L G+++ R+R + SFL Sbjct: 290 MNRTYDRLLTQYCSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTH 349 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR G + LD + + +Q A G + RI+NPT Q + DP G Sbjct: 350 HLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEHDPDGK 407 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL NVP + P + + + + Y PIVD +++ + + Sbjct: 408 FIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLSPIVDLERSAKEARERLWGW 467 Query: 478 KKQSLL 483 + ++ + Sbjct: 468 RSRADV 473 >gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605] gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 477 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 164/486 (33%), Positives = 221/486 (45%), Gaps = 24/486 (4%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHF 60 M L W R DLR+ DN L A S A V V++ P + F Sbjct: 1 MPTSRVLFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+++Q+ + G + D + L Q + +NR E +RD Sbjct: 60 LIESLVELQQRWREAGSRLLVVE----GDPVAVLPQVAQQISAEAVVWNRDVEPYARKRD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + K LQ D LL +L A Y+VY PF + ++ ++ Sbjct: 116 RQVAKTLQADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAA 175 Query: 180 P------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P L P R + GE AL L FC + Y Sbjct: 176 PTGLVDLPPELMPAGDPLPALRESHGFQGSEICPCRPGEAAALEQLTTFCNGPLLGYEPD 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292 R+ P GTS LS LS+G LSPRQ W ++ + + W EL WREFY+ Sbjct: 236 RNFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQ 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + ++P + G P+ + W + WK+G TG PIIDAAMRQLN GWMHNR Sbjct: 296 QALFYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D+ P RIFNP Sbjct: 355 CRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPA 413 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q +FD G +IR W+PEL +V T+ + S +YP P+VDHK Sbjct: 414 TQASKFDSAGDYIRRWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKNQQARFKA 470 Query: 473 QYYAAK 478 Y + Sbjct: 471 LYATIR 476 >gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II '5-way CG'] Length = 534 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 217/477 (45%), Gaps = 27/477 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW RN+LR+ DN L A ++ VF+ E + + + SL ++ Sbjct: 62 SIVWFRNNLRLLDNPPLREAAER--GPLLPVFV--GEHPGKQPPEGARQWWQARSLRRLD 117 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SLS++G + + D L + + K+ + + R L+ L Sbjct: 118 HSLSRRGAPLLFLR----GDPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSG 173 Query: 130 RVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + L P G + + A R +P R Sbjct: 174 KPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 233 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P P D+ + P GE+ A L F ++++ Y +RD +S Sbjct: 234 TETPDDWGWEPENPDWATEMRGFWDP-GEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSS 292 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L+ G +S R W +KE P +L+EL WREF HLM +P + Sbjct: 293 LLSPHLANGEISIRSVWWAIKESTA-----PDKDREKFLSELGWREFSAHLMWHHPDLAS 347 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + E W +D L AW++G TG P++DA MRQL +G++ NR+RM+ ASFLVK Sbjct: 348 ERLHKERPEI-RWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 406 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +LL+DWR G E+F L+D D A+N WQW + G D+ P+FRIFNP +QG++FDP+G Sbjct: 407 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 466 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK----NDLSLN--YPLPIVDHKKACHHTLNQY 474 +++ +LPEL+ + +YIH P + + Y PIVD + L + Sbjct: 467 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQAW 523 >gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802] Length = 488 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 117/487 (24%), Positives = 208/487 (42%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ ++ A A++I + ++ +S F+ S+ Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKK-KAQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSI 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L Q G + + + C + + ++++++ E++ + LEK Sbjct: 68 DNLRKNLQQLGSNLVIRR----GYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEK 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + L L L + ++ + + Sbjct: 124 ALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSL 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---------DI 236 + NIP + + + + + Y++ + R + Sbjct: 184 PNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNGM 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L++G LSPR + + + +L + + EL+WR+++R + A Sbjct: 244 LGSDYSSKFSPWLALGCLSPRYIYEEVTKY--ELERVKNDSTYWLIFELLWRDYFRFICA 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + W +D Q W+ G TG+P++DA M +L G+M NR R Sbjct: 302 KHGNKVFYSSGLQGFNL-PWKEDWQRFQLWQTGNTGYPLVDANMTELAATGFMSNRGRQN 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 361 VASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G ++RHWLPEL +P IH P L ++YP PIVD K+ Sbjct: 420 DYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIVDFFKSIKAN 479 Query: 471 LNQYYAA 477 Y A Sbjct: 480 EAIYNNA 486 >gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis ITI-1157] Length = 474 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 148/482 (30%), Positives = 225/482 (46%), Gaps = 28/482 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR++D+ AL AA S VI VFI + A + L + + Sbjct: 9 LIWFRQDLRLSDHPALSAAVR-SGRPVIPVFIRDSLV---DDLGAAPKWRLSLGLAALAQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L KG +++ L + + +++++R Y+ + + RD ++ L Sbjct: 65 NLEHKGSKLVLRSGP----ALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTEL 120 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 KSF +L P ++ + ++V+TP +A+ Q A R P + Sbjct: 121 GLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPERLAAPPLWPAS 180 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + GE A L E++ Y QRD A GTS L Sbjct: 181 EHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLD-AFMERLDAYPAQRDALADDGTSHL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL++G + PR W+R+K + GA ++L +L+WREF HLM P + Sbjct: 240 SEYLALGEIGPRTVWHRVK----GAALIGSIGADAFLRQLVWREFAYHLMYHTPHLLTQN 295 Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P + WN+D +AW TG P++DA +R++ G MHNR RMI AS+L K Sbjct: 296 W-RPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNRARMIVASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ W+IG ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP G Sbjct: 355 HLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQTQAEKFDPTGA 414 Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+ E + P + + P SW D + YP P+VD K L Y K Sbjct: 415 YVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDDA--YPQPVVDLKVGRERALAAYEGRK 472 Query: 479 KQ 480 Q Sbjct: 473 NQ 474 >gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 493 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 112/474 (23%), Positives = 183/474 (38%), Gaps = 32/474 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR+ D++ L A V+ ++I PE W Q SARQ F SL +Q Sbjct: 6 QLVWFKRDLRLVDHQPLARALAR--GPVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQ 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ ++ G D+++ L+ Q ++ L+ + + Sbjct: 64 EAFAEVGQPLIIRS----GDAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAA--- 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + LP ++ + + + + + A P+ I T Sbjct: 117 -WARERGIPWHELPQFGVVRRLQTRRGWARRWEERMGEAITPAPTGLTPLSGIAPGDLPT 175 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSP 247 + G + L L F +V Y P +G S+LS Sbjct: 176 NDALALQA----DPCPYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFKGCSRLSA 231 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y++ G LS R+ R +E G S+ + L W + + P + F Sbjct: 232 YITWGCLSMREVLQRSRE-------FQGRGVSSFSSRLHWHCHFIQKLEDQP-PIEWEDF 283 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P+ I D AW +G TG P +DA MR L GW++ R+R + SF +L + Sbjct: 284 HPFMRGIRSLDD-ARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLWL 342 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR + Q +D + + Q +G+ S+ RI+NP QG DP G FIR Sbjct: 343 PWRDTGLHLARQFVDYEPGIHWS--QCQMQSGSTSINTIRIYNPIKQGHDHDPDGAFIRR 400 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 W PEL +VP ++H P S L +PIVD + + + ++ + Sbjct: 401 WCPELEDVPAVHLHEPWSLLGAPRS-----MPIVDCAISAREAKERIFEIRRSA 449 >gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio] gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio] Length = 638 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 115/500 (23%), Positives = 195/500 (39%), Gaps = 34/500 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ + W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +V++L + E RD ++K Sbjct: 60 EDLDASLRKLNSCLFVIR----GQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V L I+ + + L+ ++ D + Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLASPDRGMM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 VTP + Y ++ ++P GE AL + + + E Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTAWQEN 235 Query: 234 RDIPAIQGTSQL------SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + P + + + SPYL G LS R + + S ++++W Sbjct: 236 FERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVKKNMNPSI-SLYDKILW 294 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ P + P +I W++++ L W + TGFP IDA M QL G Sbjct: 295 REFFYTAATNNPRFDRME-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEG 353 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G + F LLD D + N G W + + +F Sbjct: 354 WIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQFF 412 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 + P G+R DP G FIR +LP L + P +YI+ P + K + ++YP P+ Sbjct: 413 HCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCAIGVDYPKPM 472 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H +A + + +Q Sbjct: 473 VNHAEASRLNIERMRQIYQQ 492 >gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985] Length = 444 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 212/469 (45%), Gaps = 33/469 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ D L + + +F+ P G + +++++L + + Sbjct: 6 LCWFRRDLRLADQPMLLEVAKEA----VGLFVLDPRL--TRGSGQARLDYLFSALAALDE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKLLEKRLQH 129 +L G + D + + V + R + Sbjct: 60 TL---GGRLVVAE----GDPARVVPDVARELNVGAVRCTEDFAPYGRARDAAVAAALKAQ 112 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + PG + N + Y+V+TPFR+A + ++ L V+ Sbjct: 113 GRELRPAGSPYAISPGRVRNGSGNPYRVFTPFRRAWSAHGWPRPAQTGADSTRWLAAEVS 172 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + GEQ A F + + Y + RD PA+ GTS+LS +L Sbjct: 173 CQTELPSPRLVRE-------AGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAHL 225 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G L PR + + ++ EL WR+FY +++ +P Sbjct: 226 KFGALHPRTLL-----RDIAAADADDTDKDVFVTELAWRDFYADVLSHHPRTAWHNVDRR 280 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + ++ W+ AW++G TG+PI+DA MRQL GWMHNR+RMITASFL KDL + W Sbjct: 281 F-DRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDLHLPW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + G +F+ L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I+ W+ Sbjct: 340 QWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYIQRWV 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P+L ++P H P+ YP PIVDH + L +Y A K Sbjct: 400 PQLRDMPGPKAHEPNPRPA------GYPPPIVDHAQERAEALLRYEAVK 442 >gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420] Length = 488 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 125/487 (25%), Positives = 215/487 (44%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 L+W RNDLR+ D++ L+ A A+VI + + A ++ F+ S+ Sbjct: 7 LLWYRNDLRLHDHEPLHQALQT-KAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++++ +G + + + + +T ++++++ EV + L+ Sbjct: 66 ADLRENVRSRGSNLLVRRGL----PENVIPTLAKELDITTVYFHQEVTSEEVAVESALKN 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPV 179 L I L L L + ++ R + Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKKSTIYPPFPTPKRLPSL 181 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-I 236 P++ + ++ + F GE A + K+ + Y + R+ + Sbjct: 182 PSVEVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCLKVYKQTRNGM 241 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L++G LSPR + + + + + ELIWR+F+R + A Sbjct: 242 LGSDYSSKFSPWLALGCLSPRFI--YEQVQQYEQEQIKNDSTYWLVFELIWRDFFRFICA 299 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + I W +D W+QG TGFP+IDA MR+L G+M NR R Sbjct: 300 KHGNRIFRPSGLQGI-PIPWKEDWDRFTLWQQGKTGFPLIDANMRELAATGFMSNRGRQN 358 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W+IG E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 359 VASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIQKQSK 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DPQG +++HWLPELN++P +H P + L ++YP P+VD ++ Sbjct: 418 DYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPVVDLMESVKAN 477 Query: 471 LNQYYAA 477 Y AA Sbjct: 478 EKVYNAA 484 >gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 529 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 100/491 (20%), Positives = 178/491 (36%), Gaps = 27/491 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR D+ L A + V+ ++ P W Q S + HF L Sbjct: 16 MSYSVVWFKRDLRTHDHAPLKQALQS--GPVLCLYCIEPTLWAQPDASTQHYHFALECLR 73 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + G+ Q D+ E L + ++ + + + R Sbjct: 74 DLWVQLKELGLRLQL----VAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARDRAVSR 129 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 ++N + + + + S+ +P Sbjct: 130 WCKAQGVDWHQYKQFGVVRGVVNRDVWHLQWTEHMSGSQVSLDGSLHAVSVELPWDASKP 189 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 PV S D P + + G A +L+ F ++ Y P A + S+ Sbjct: 190 PVATSLGLEGTDKPQRQV-----GGRARAEQVLQSFLTDRSARYRGGISSPLSASEACSR 244 Query: 245 LSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 LSPYL++G LS R+ ++E + + ++G S+ + L W + + P + Sbjct: 245 LSPYLALGCLSVREVVQAVQEVQGARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPDI 304 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E + L+ G TG+P++DA + L GW++ R+R + S Sbjct: 305 EFRNMHRGYDGLREAEHNPEHLKVLMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSIA 364 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + WR E+ + LD + + Q +G + RI+NP Q + DP Sbjct: 365 AYPLWLHWRPVGEWLAREFLDYEPGIHWS--QLQMQSGTTGINIPRIYNPIKQARDQDPD 422 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND---------LSLNYPLPIVDHKKACHHTLN 472 G F+R WLP + VP ++ P + P P VD + A Sbjct: 423 GQFVRRWLPAMRKVPDAWLFEPWRMPLGMQSRLGLTVDGPEPDIPQPSVDLEAATRAAKK 482 Query: 473 QYYAAKKQSLL 483 + + + Q + Sbjct: 483 RLFELRAQPSV 493 >gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana] gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana] gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana] Length = 537 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 192/501 (38%), Gaps = 33/501 (6%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------IS 54 M+ L+W R LR+ DN AL A S+ VF+ P Sbjct: 1 MATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSRAG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYN 109 + F+ SL + SL + G + + + L C + + Sbjct: 60 VNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQA 119 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 ++ + +E + + G KV A + + Sbjct: 120 LDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELV 179 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + L PS + QA F GE AL L K +K + Sbjct: 180 MSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWV 239 Query: 230 YVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 ++ T+ +SPYL G LS R + L+ + D+ S L + Sbjct: 240 ANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLLGQ 298 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA M QL Sbjct: 299 LLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLL 357 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMH+ R A FL + DL + W G + F L+D D A NNG W W + + Sbjct: 358 KWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ 417 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 + RI++P GK++DP G +IRH+LP L ++P QYI+ P + + +YP Sbjct: 418 -FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYP 476 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 P+V H A + A Sbjct: 477 KPMVLHDSASKECKRKMGEAY 497 >gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801] Length = 488 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 119/487 (24%), Positives = 211/487 (43%), Gaps = 29/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++ ++ A A++I + Q++ +S F+ S+ Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQ-KAQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSI 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L Q G + + + C + + ++++++ E++ + LEK Sbjct: 68 DNLRKNLQQLGSNLVVRR----GYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEK 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + L L L + ++ + + Sbjct: 124 ALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSL 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---------DI 236 + NIP + + + + + Y++ + R ++ Sbjct: 184 PNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNEM 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L++G LSPR + + + +L + + EL+WR+++R + A Sbjct: 244 LGSDYSSKFSPWLALGCLSPRYIYEEVTKY--ELERVKNDSTYWLIFELLWRDYFRFICA 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + W +D Q W+ G TG+P++DA MR+L G+M NR R Sbjct: 302 KHGNKVFYSSGLQGLNL-PWKEDWQRFQLWQTGNTGYPLVDANMRELAATGFMSNRGRQN 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 361 VASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQSK 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G ++RHWLPEL +P IH P L ++YP PIVD K+ Sbjct: 420 DYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIVDFFKSIKAN 479 Query: 471 LNQYYAA 477 Y A Sbjct: 480 EAIYNNA 486 >gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus 273-4] Length = 541 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 182/516 (35%), Positives = 254/516 (49%), Gaps = 50/516 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN AL A C ++ AK+ AVF TPEQW+ H +S Q I +L Sbjct: 25 LMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLPI 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L I C +F D I L + C ++ + N +YE NE+ RD+ L K+L Sbjct: 85 LAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQL 144 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + PP +I + MY+V+TPF K L D++ PAI Sbjct: 145 AKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNNE 204 Query: 187 PV--------------------------------TPSNIPRFFDYPFQAIDPMFPIGEQN 214 + D +P GE Sbjct: 205 QINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEAE 264 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 A H L +F + + +Y RD+P++ TS LS YL+IG LSPR C+ + + +L Sbjct: 265 ACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRND 324 Query: 275 KSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA- 325 W++EL WR+FYRH++ + P + + + T+K A Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFAA 384 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASNNGGWQW+ASTG DS PYFRI NP Q K D G F++ WLPEL +P +H+ Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSEDK 504 Query: 446 WLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++YP+P+V+HK A + ++ Sbjct: 505 MRKALSKNGAFADIDYPIPMVEHKLARQLAIAEFKK 540 >gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1] Length = 495 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 100/491 (20%), Positives = 180/491 (36%), Gaps = 24/491 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + +++V + DLR+ DN+A++ A ++ +F+ S R +F Sbjct: 1 MNTQNKIEINVVLFKRDLRLQDNEAIHNALSTGKKTLL-LFVFEDILLNDPHYSERHWNF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I SL+ + SL + + L ++T LF +++ I Sbjct: 60 IKESLIDLNNSLIAYNSEILIVRS----NINRTLQIIQETYKITHLFSHQETGIKVTYDR 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + KR + ++ + + + K + L+ L + D Sbjct: 116 DKMLKRFLANNMITWVENINNGVFRGLQDRTDWIEKWENFMNQPLLSFLPKKDQLFTKKE 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 L + G AL F +++ Y P A Sbjct: 176 VQHLA------SFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYNHHISKPLLA 229 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + S+LSPYL+ G LS R+ S+ + L W+ + Sbjct: 230 RRSCSRLSPYLAWGNLSVREVIQETTRCIEQ--NIYPKQMESFGSRLRWQAHFIQKFEME 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + K++ ++AWK G TG+P++DA MR L G+++ R+R + Sbjct: 288 DEMEFV-SINKGYRKLKKRVSERYIEAWKNGMTGYPLVDACMRCLKETGYLNFRMRALVV 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF +L W+ LD + + Q A G + R++NPT G Sbjct: 347 SFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQA--GETGINMLRMYNPTKNGIAH 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP+G FI+ W+PEL + T ++H P L +YP PIV+ ++ H + Sbjct: 405 DPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPKPIVNLQETRKHASD 464 Query: 473 QYYAAKKQSLL 483 + K ++ + Sbjct: 465 ILWNMKDENTV 475 >gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus SJ] Length = 434 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 225/480 (46%), Gaps = 47/480 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK V + W R DLR+ DN LY A NS V+ +FI + + F Sbjct: 1 MKKNKD-KVSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSF 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I+ L + + + ++ V +++ N YE + RD Sbjct: 59 IHECLQNLSEKFRKYDGDLLTF----YNSPKNAWKEIFESFDVQEVYTNEDYEPYALSRD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K +E L + I +S+ D + IL Y VYTP++ ++ L +DL S+ Sbjct: 115 KSIEDYLTRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKS 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 S I F FP R K+ + Y E RD+P+I Sbjct: 175 EKNLSKIYKFKSEIHSLMSLGFTKSHISFP---------KRIIKKKIITNYHETRDLPSI 225 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS L +L G + PR L +WLNELIWREF+ ++ +P Sbjct: 226 NGTSLLGVHLRFGTIGPR-----------KLASIAYHTNKTWLNELIWREFFSQILFHFP 274 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + PF E IEW + + W +G TGFP++DA MR+LN G MHNR+RM+ AS Sbjct: 275 HV-VNAPFREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVAS 333 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLVKDLL+DWR GE+YF +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FD Sbjct: 334 FLVKDLLIDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFD 393 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P +++ W+PE S NY IVDHK+A H + Y A K Sbjct: 394 PDLIYVKKWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434 >gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425] Length = 475 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 228/478 (47%), Gaps = 17/478 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN L AA AKV+ VF P + ++ + ++ SL +Q+ Sbjct: 6 LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 Q G + + +F+N E RD+ ++ L+ Sbjct: 65 QYVQSGSQLLILH----QQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I L PP +I + + Y V++PF + + + + SL Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180 Query: 190 PSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ P GE A L +FC+ +Y Y ++R+ PA GT Sbjct: 181 AADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNFPATTGT 240 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLS L GVL R W + + + +W EL WREFY+H + ++P++ Sbjct: 241 SQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHALYWFPAL 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G P+ + W QAW +G TG+PI+DAAMRQ+NTIGWMHNR RMI ASFL Sbjct: 301 AEGAYRQPF-KTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNRCRMIVASFL 359 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D P RIFNP Q ++FDP+ Sbjct: 360 TKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPE 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR WLPEL +V T + + YPL IVDH Y K+ Sbjct: 419 ADYIREWLPELRSVETADLVT-GKISLEERDRCGYPLAIVDHHHQQRLFKQLYEQQKR 475 >gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC 27029] Length = 440 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 212/457 (46%), Gaps = 31/457 (6%) Query: 7 MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M+ +V DLR+ D+ AL AAC D +V+ +++ P + +S ++ F++ S Sbjct: 1 MTGRTAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQS 56 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLL 123 L ++++L ++G + +++ + + R +L Sbjct: 57 LADLREALRKRGGDLVIRRGDPVAETV----KLARKVGAEGVGLSADVSRYAHRRERRLR 112 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + +HR+ + F ++ PG++ Y+V++P+ +A +R A Sbjct: 113 AECDRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQ------GVRWRDELAAP 166 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P P + P +G + + Y + D A TS Sbjct: 167 KRVRLPDGVDPGRLPDPPKGDSPDAAVGGETVARRRLTAWLPTLDRYDDIHDDMAGDETS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G +SP NR + ++ +L WR+FY ++A +P + Sbjct: 227 RLSPYLRFGCVSPLAVANRAGDRDG-----------PFVRQLCWRDFYHQVVAGFPDLST 275 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 E D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K Sbjct: 276 VAYRRGAREDWRD--DPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 ++R W+PEL +V + +H P D+ +L+YP P+ Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana CCMP1335] Length = 556 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 194/510 (38%), Gaps = 45/510 (8%) Query: 9 VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V + W R LR+ DN AL A ++ + V+I P ++ S ++ F+ + Sbjct: 14 VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + KSL ++G D +E L + VT + + + Sbjct: 74 SDLDKSLRERGSRLYV----ATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129 Query: 126 RLQHRVICKSFDDSVL-------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R + + PG + + + L + D ++P Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNIP 189 Query: 179 VP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +P + P + P + + ++ V R Sbjct: 190 LPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQSTVTARP 249 Query: 236 I--------------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAF 279 + T+ LSPYLS+G LSPR+ W+ + + + Sbjct: 250 DWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSKVNKTKPPV 309 Query: 280 SWLNELIWREF----YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WR+F A P P+ + W+ D LL+AWK G TGFP Sbjct: 310 SLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKLLKAWKDGKTGFPW 369 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL T GW+H+ R A FL + DL W +G ++F +LLD D A NN W W Sbjct: 370 IDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYALNNFNWLW 429 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448 + +G YFR ++P K+ D G +IR W+PEL +P +YI+ P Sbjct: 430 LSCSGFFYQ-YFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIYEPWKAPSSVLNAA 488 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L NYP PIVDH +++ A Sbjct: 489 GIKLGDNYPNPIVDHAFVSKENMSKMSLAY 518 >gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217] Length = 473 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 145/477 (30%), Positives = 217/477 (45%), Gaps = 25/477 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ D+ AL AA +I VFI G+ A + SL + + Sbjct: 8 LVWFRRDLRLADHPALCAAIE-GGGPIIPVFIHDDSVA---GLGAAPKWRLGLSLASLAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +G + ++E L + + + ++R Y+ + RDK ++ L+ Sbjct: 64 DLEDRGSRLILRR----GSALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALRED 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 +S V+ P ++ Y+VY+P +A+ ++A L ++ Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAPDMWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ + P +GE A+ L F + Y + R+ PA++ TS L Sbjct: 180 DGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAVEATSSL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPRQCW+ + GA WL EL+WREF HLM P + Sbjct: 240 SENLTYGEVSPRQCWHAGQRALHAGA----QGAEHWLKELVWREFAYHLMYHTPHILTDN 295 Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W + D + AWKQG TG P +DAAMR++ G MHNR RMI AS+L K Sbjct: 296 WRTDWDAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ W++G ++F L D D ASN GWQWAA G D+ PYFR+FNP Q ++FD G + Sbjct: 356 LMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEKFDRDGAY 415 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 R W+ E P P W + + +YP +VD + L Y A Sbjct: 416 TRRWIAEGQGQPQATALDYFKAIPRRWSLSS--TSSYPNRLVDLAGGRNRALAAYEA 470 >gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus] Length = 559 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 129/499 (25%), Positives = 203/499 (40%), Gaps = 35/499 (7%) Query: 6 AMSVH--LVWLRNDLRITDNKALYAACHNSDAKVI-AVFIATPEQWRQHGISARQSHFIY 62 M + + W R LRI DN AL A KV +FI P + + F+ Sbjct: 35 KMPHNSTIHWFRKGLRIHDNPALLTAIQ--GTKVFRPIFILDPHFIESEKVGINRWRFLL 92 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + S G + + + VT+L + E RRD+ Sbjct: 93 ETLQDLDYSFRALGTRLFVVR----GNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQE 148 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181 + + + + S L A + T R + + + A P Sbjct: 149 VIELAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLM 208 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGE----QNALHILRKFCKEK 226 TG TP +Y +++ + +P GE Q L + Sbjct: 209 ANFTGVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVC 268 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + T+ LSPYL G LSPR+ + +KE + K S + +LI Sbjct: 269 GFEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTKPPV-SLMGQLI 327 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ + A P+ + P ++ W+++ L AWK+G TG+P IDA M QL T Sbjct: 328 WREFFYTVAAGTPNFHQMEE-NPICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRTE 386 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL W G+E F LLD D + N W W +S+ Y Sbjct: 387 GWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ-Y 445 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 +R+++P + GK+ D G +IR ++P LN +P +YI+ P + + +YP P Sbjct: 446 YRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPRP 505 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVDH + + A+ Sbjct: 506 IVDHSIVSKRNIGRMKDAR 524 >gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas] Length = 536 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 123/506 (24%), Positives = 201/506 (39%), Gaps = 37/506 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52 M + ++ L+W R LRI DN AL A S+ V VF+ P + Sbjct: 1 MPSGSS---TLMWFRKGLRIHDNPALEYASKGSNF-VYPVFVIDPHYMKPDPNAFSPGST 56 Query: 53 -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + G + I L + +++ + + Sbjct: 57 RAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPY 116 Query: 112 YEINEVRRDKL------------LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 Y+ +V+ I + L S L A + + Sbjct: 117 YQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPSWASS 176 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 P ++ D+ S + + + ++ + PF+ + + I Sbjct: 177 PLSISISSLPPVGDVGSCEISEVPTVEELGYGDVEQDEWTPFRGGESE--ALKSLRESIK 234 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 K T+ LSPYL G LS R + L++ + ++ Sbjct: 235 DKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNVKKHTSPPV- 293 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 S + +L+WR+F+ + P+ K ++I WN+D+ LL AW+ TG+P IDA Sbjct: 294 SLVGQLLWRDFFYTVAFGTPNFDQMKD-NRICKQIPWNEDTELLAAWRDARTGYPWIDAI 352 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M QL GWMH+ R A FL + DL V W G + F L+D D A NNG W W + + Sbjct: 353 MVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCS 412 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDL 452 Y RI++P GK++DP G +IRH+LP L ++P ++I+ P + K + Sbjct: 413 SFFYQ-YNRIYSPISFGKKYDPNGNYIRHFLPVLKDMPKEFIYEPWTAPLSVQTKAKCII 471 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478 +YP P+V H A + A Sbjct: 472 GRDYPKPVVSHDSASKECKRKLAEAY 497 >gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366] Length = 434 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 148/482 (30%), Positives = 216/482 (44%), Gaps = 50/482 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSH 59 MK+ V + W R DLR+ DN LY A +S V+ +FI + R+ Sbjct: 1 MKSK----VSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVD 55 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +I +LL++ L + IE + Q V +F NR YE ++R Sbjct: 56 YIDQALLKINTQLKLSKTRLNTFH----GNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQR 111 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D + + + I ++ S + + L++ + Sbjct: 112 DVEIYEFFKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH 171 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + I D F+ D F K + Y + RD PA+ Sbjct: 172 PDYNNFFRQEFTGIHSLNDIGFEKTDIAF---------ETPKLTTTIIDEYDKYRDYPAM 222 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 Q T+QL L G +S R+C + +WLNELIWREF+ ++ +P Sbjct: 223 QRTTQLGIALRFGTISIRKCVAFGLKHNQ-----------TWLNELIWREFFMQILYHFP 271 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + F + I+W + H W +G TG+PI+DA MRQLN G+MHNR+RMI AS Sbjct: 272 KVVD-QSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAAS 330 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL K LL+DWR GE YF +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD Sbjct: 331 FLCKHLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFD 390 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +++ W+PE + NYP PIV+H A L Y A K Sbjct: 391 KNFAYLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIK 431 Query: 480 QS 481 ++ Sbjct: 432 EN 433 >gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC 33406] gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme) [Cytophaga hutchinsonii ATCC 33406] Length = 433 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 216/474 (45%), Gaps = 47/474 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 V + W R DLR+TDN L+ A S V+ VFI + + FI+ ++ Sbjct: 4 VVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDARVEFIHDTIQS 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + + + + E + + V ++ N YE ++RD + Sbjct: 63 LKNELQKIHSDMEVYHAT----PAEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISDWA 118 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I KSF D V+ IL Y+VYTP++ ++ L + + P+ + T Sbjct: 119 AQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTH--SPSEKHTD 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQL 245 P + ++ + Y + RD P ++ TS L Sbjct: 177 AFLRMEAKPIVTLKQLGFTPSS------IQIPPLETLRKTIQEYDKTRDYPYLEHGTSLL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 + G +S R+ ++K +WL+ELIWREF+ L+ +P V + Sbjct: 231 GIHFRFGTISIRE-----------KVVKALPLNATWLSELIWREFFMQLLFHFPHVVT-E 278 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F ++EW + W G TG+P++DA MR+LNT G MHNR+RM+ ASFL K L Sbjct: 279 SFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHMHNRVRMVVASFLTKHL 338 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR GE YF +LLD DL++NNG WQWAA TG D+ PYFRIFNP Q ++FDP +I Sbjct: 339 FIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIFNPISQQEKFDPDFIYI 398 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+PE + +Y PI++HKKA + K Sbjct: 399 KKWVPEFG-------------------TSSYIEPIIEHKKATERAKLLFSVLKN 433 >gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM 20162] Length = 451 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 220/473 (46%), Gaps = 25/473 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W R DLR+ DN AL A + V+ + + P H + + + A++L Sbjct: 1 MTV-IWWARRDLRLGDNPALCA--AAAAGPVLPLVVLDPALL--HDGARPREAWYAANVL 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G +E + + L+ T + +R+ RRD + R Sbjct: 56 ALDDQL---GGELCLRS----GSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDR 108 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I S + PG I+ Y+V+ F++A ++ A + Sbjct: 109 LAEHGIDWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQLPDRVHWARP 168 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + P+ P GE AL +F +++ Y + RD P +S+L Sbjct: 169 PAGGAAERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL +G + PR L GA + +EL WR+FY ++ +P Sbjct: 229 SPYLKVGAVHPRTLLTGL---------GSSDGAAKYASELCWRDFYADVLYHHPDSLR-T 278 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 +E+ AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL Sbjct: 279 DLTKALAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDL 338 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 V W G +F+ LLDGD ASN GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++ Sbjct: 339 HVWWPHGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYV 398 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL ++ AP D YP PIVDH + TL +Y + Sbjct: 399 RRYVPELRHLDGAAALAPWKHTDGYAHG--YPAPIVDHAEERAVTLARYGTVR 449 >gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii] Length = 489 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 133/489 (27%), Positives = 216/489 (44%), Gaps = 24/489 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ DN AL AA + V+ VF+ PE+ Q ++ SL+Q+ Sbjct: 5 LVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQLSS 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + G + + +++ L +++FYN Y+ + RD +++ L Sbjct: 65 SLERLGAPLLVRRTAG---TLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLADH 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I K+F +L P I + Q++ + F + P + L G + Sbjct: 122 GISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLPPRQLLSLPGYLC 181 Query: 190 PSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 S + + G F + Y +R T Sbjct: 182 QSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSVTT 241 Query: 243 SQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 SQLSP+L G +S R+ + ++ ++F +L L RE+ R+L +P Sbjct: 242 SQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSFNFP-F 300 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + W D ++W+QG TG+P++DA MRQL GW+H ++R++ +SFL Sbjct: 301 THKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVVVSSFL 360 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK L V W G +YF LLD D+ ++ GWQ+ + D R NP ++G + DP+ Sbjct: 361 VKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGYKLDPK 420 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC---HHTLN 472 G ++R WLPEL+ VP +IH P +L NYP PIV+ A L+ Sbjct: 421 GEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQQQALD 480 Query: 473 QYYAAKKQS 481 + + KK + Sbjct: 481 EMW--KKSA 487 >gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] Length = 442 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 142/438 (32%), Positives = 207/438 (47%), Gaps = 19/438 (4%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ SL + ++ +G + + + +++N + Sbjct: 11 GGAARWWLAQSLRALGAEIAARGGSLILRKGPAAG----VIPEEARESGARAVYWNGIAQ 66 Query: 114 INEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----- 167 ++ LE L + +SF +L+PP +I N + +V+TPF + ++ Sbjct: 67 APHQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLSLGDPP 126 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 + A + P P I + P D+ + P GE +A LR F K Sbjct: 127 KPLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRERWTP-GEASARARLRDFLKTIA 185 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y RD P GTS LSP+L G LSPRQ W+ G +L+EL W Sbjct: 186 RGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHA-ARFAAAEDAALGPGIEKFLSELGW 244 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF RHL+ +P + + W D +L AW++G TG+PI+DA +R+L G Sbjct: 245 REFCRHLLHDHPDLATEN-LQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAGLRELWHTG 303 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 MHNR+RM+ ASFLVK LL+DWR GE +F L+D D SN WQW A G D+ PYFR Sbjct: 304 VMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPYFR 363 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIV 461 +FNP +QG++FDP GT++R W+PEL +P + IH P L YP PIV Sbjct: 364 VFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLGKTYPQPIV 423 Query: 462 DHKKACHHTLNQYYAAKK 479 DH + L+ Y +K Sbjct: 424 DHARGRERALSAYAKIRK 441 >gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense MSR-1] Length = 457 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 221/474 (46%), Gaps = 30/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+TD+ AL A V+ F + R + +++ SL + Sbjct: 7 LVWLRRDLRLTDHPALTHAAQQ--GPVVLAFCHDDQDGRA--LGGASRWWLHHSLAALGD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + +++N + + + + L+ Sbjct: 63 T-----------VTLARGRCEAEIPRLAEACGARAVYWNASADPALSATEARVRQALK-- 109 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + ++F L G++ +A ++V+TPF + + P P + P P Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169 Query: 191 --SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + ++ + ++ GE A L F V Y RD+PA GTS LSP+ Sbjct: 170 LAALELMPKLDWWRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGTSLLSPH 229 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +SPRQ W+ + G ++L EL WREF RHL+A P + P Sbjct: 230 LAFGEISPRQIWHAARALPPG------DGIHTFLKELGWREFSRHLLARQPDLATI-PLR 282 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P W D L+ W+ G TG+PIIDA +RQL GWMHNR+RMI ASFL+KDLL+ Sbjct: 283 PEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIKDLLIP 342 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ GE +F L+D D A+N WQW A +G D+ P+FRIFNP QG++FDP GT++R W Sbjct: 343 WQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFDPDGTYVRTW 402 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 +PEL ++P ++H P YP P+VDH A L + K Sbjct: 403 VPELAHLPKAFVHQPWKMGRA----PGYPPPMVDHALARTRALAAFKGLKDDPA 452 >gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328] gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328] Length = 486 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 109/486 (22%), Positives = 211/486 (43%), Gaps = 29/486 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 ++W R+DLR+ D++ L A ++ A++I ++ P Q+ + + F+ S+ Sbjct: 9 ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++ +L + G + + Q + ++Y+++ E+ ++ LEK Sbjct: 68 ADLRHNLQKIGSNLLVR----IGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEK 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + L L ++ + ++ P + Sbjct: 124 ALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSIIYPPYTPPKQLPTF 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------ALHILRKFCKEKVYYYVEQRD-I 236 + P IP + + + ++ + Y + R+ + Sbjct: 184 PDIEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQRDCLKNYKQTRNGM 243 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ SP+L+ G LSPR + ++ + + + + EL+WR+++R + Sbjct: 244 LGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRVKND--STYWLVFELLWRDYFRFICL 301 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + K + + W ++ Q+W G TGFP++DA MR+L G+M NR R Sbjct: 302 KHGRKVFYKSGLQGVKI-PWGENWQQFQSWCDGLTGFPLVDANMRELAATGFMSNRGRQN 360 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L ++W++G E+F S L+D D+ SN G W + A GND FR FN Q + Sbjct: 361 VASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQSQ 419 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHT 470 +DP G +++HWLPEL ++P +H+P ++ + ++YP P+VD +++ Sbjct: 420 DYDPMGDYVKHWLPELASIPHGKVHSPWRLSNQEQIRFGMRLGVDYPYPMVDLQRSVEAN 479 Query: 471 LNQYYA 476 Y Sbjct: 480 RRIYEK 485 >gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10] Length = 512 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 185/472 (39%), Gaps = 19/472 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VWL+ DLRI D++ L A + V+ +F+ W +S R F+ SL ++ Sbjct: 2 VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L Q+G + + I+ L +LF + + + + Sbjct: 60 DRRLDQRGARLY----TAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWM 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 C + + + K Y + A + +A PA G Sbjct: 116 KARGCTMKEWPHFGVTRGLKSRDDFQ-KGYERYVNAPVVPAPEAVRGIRHAPAWLTKGAG 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLS 246 P P AI GE+ A +L+ F +E+ Y + P + S+LS Sbjct: 175 E----PGGIALPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKPFASAESCSRLS 230 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGK 305 PYL+ G LS R + +L ++L+ L W + + P + + Sbjct: 231 PYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAFLSRLHWHCHFIQRLEDEPEIAH-R 289 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + + Q W G TG P+IDAAMR L+ GW++ R R + SF+ L Sbjct: 290 TMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFRSRAMVISFVCNTL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWR E LD + + Q A G RI+NP QG+ DP G F+ Sbjct: 350 MLDWRRPAEDLSRLFLDYEPGIHYSQVQMQA--GTTGFNTIRIYNPVKQGQEHDPSGAFV 407 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 R ++PEL+ V +IH P YP+P+VD KA + Sbjct: 408 RRFVPELSAVSDAFIHEPWKLPA--GPPKGYPMPMVDVAKANGEARRILWGL 457 >gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens] Length = 574 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 115/493 (23%), Positives = 185/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L VF+ P + + F+ L + Sbjct: 24 VHWFRKGLRLHDNPSLREGL-TGATTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 83 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 138 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + ++ ++ + V + + T Sbjct: 139 GISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGSAYT 198 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 199 PLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 258 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 259 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 316 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 317 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 375 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 434 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + +Y LP+V+H K+ Sbjct: 435 FGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKSS 494 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 495 RINIERMKQVYQQ 507 >gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902] Length = 477 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 222/480 (46%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66 L W R DLR+ DN + AA S A V V++ P + ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFLLESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G + D ++ L + + +NR E RD+ + KR Sbjct: 66 ELQQRWRAAGSRLLILE----GDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKR 121 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181 LQ D L +PP + A Y+VY PF + + ++ P+ Sbjct: 122 LQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVD 181 Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L P GE AL L F + Y R+ P++ Sbjct: 182 LHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLFADGPLSGYEPDRNFPSV 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS LS LS+G LSPRQ W ++ + ++ W EL WREFY+ + + Sbjct: 242 VGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G P+ + W + +W++G TG PIIDAAMRQLN GWMHNR RMI A Sbjct: 302 PELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRCRMIVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q +F Sbjct: 361 SFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G +IR W+PEL +V T+ + + YP P++ HK Y + Sbjct: 420 DADGEYIRRWVPELRHVNTKDL---LTGEIGGLERRGYPEPLITHKTQQALFKTLYATIR 476 >gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii 23-P] Length = 496 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 106/483 (21%), Positives = 187/483 (38%), Gaps = 25/483 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+VW + DLR+ DN+A+ A S+ +V+ +++ R FI S++ + Sbjct: 8 IHVVWFKRDLRLQDNEAIQNAL-ASNKRVLFLYVFENSLIEDPHYDTRHWDFIKQSVVAL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + Q + + + +V +F +++ + R Sbjct: 67 NAELKKYDTKVLCVQT----EVVNAFNQIFDSFKVDTVFSHQETGLLITYNRDKEFTRYC 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +++ +LN A K I+N + A+ ++ Sbjct: 123 RNNSVTWKENNNNGVLRGLLNRADWFDKWDDYMYDTQIKNTLNAEKFISIEEIEQIEAYF 182 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 + FQ G + A F + + Y+ PA Q S+LS Sbjct: 183 NTVALETPKHSYFQ------QGGTKMAWKYADTFFQTRHEKYMSNISKPALARQSCSRLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +S RQ + + D + +++ L W+ + Sbjct: 237 PYLAWGNVSIRQIFQEATKRKTDANKRHLGA---FISRLRWQAHFIQKFE-MEHTMENAS 292 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +K++ + +AW+ G TGFP+IDA+MR L G+++ R+R + SF L Sbjct: 293 INKGYQKLKKSISLEYQKAWETGTTGFPLIDASMRCLKETGYLNFRMRAMVVSFFTHILW 352 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ ++ LD + + Q A G + RI+NP D GTFI+ Sbjct: 353 QPWQSSSQHLSKLFLDFEPGIHFSQLQMNA--GETGINTLRIYNPIKNSIEHDEDGTFIK 410 Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL N+ +IH P+ + +L +NYP PIVD K A + + KK Sbjct: 411 KWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKIARKKASDTLWEMKKN 470 Query: 481 SLL 483 S + Sbjct: 471 SDV 473 >gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212] Length = 434 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 140/473 (29%), Positives = 207/473 (43%), Gaps = 43/473 (9%) Query: 7 MSVHLV--WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS LV W R DLR+ DN L A S V+ VFI P + + FIY + Sbjct: 1 MSASLVVFWFRRDLRLDDNVGLSHAL-ASGQPVLPVFIFDPSILTGLPENDARVTFIYDT 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ L ++ + +SIE D VT ++ N YE RD+ + Sbjct: 60 LQTLRTQLEERYSS---SIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVC 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L+ R + + +L + + V + + + +L Sbjct: 117 EWLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSEKL 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + P + I + + + +Y RD PA+ TS Sbjct: 177 GNMIKHLHSPNLSLTDIGFVRSAVTI-------PASRLDTKLLQHYAHDRDFPALTATSL 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L P+L G +S RQ + + + + NELIWREF+ ++ +P Sbjct: 230 LGPHLRFGTISIRQVFQQAL----------NTSNDIFGNELIWREFFSQILWHFPH-TQN 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++I+W + + W +G TG+P++DA MRQLN G MHNR+RMITASFL K Sbjct: 279 SSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLCKH 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD D+ASN G WQW A G D+ PYFRIFNP Q K+FD ++ Sbjct: 339 LLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNFSY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ W+ + + YP P++ H A L Y A Sbjct: 399 IQTWV-------------------NDWRTPTYPAPMIKHTDARARCLETYQQA 432 >gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134] Length = 447 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 243/487 (49%), Gaps = 53/487 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 S+ + W R DLR+ DN LY A N + V+ +FI + +IYA+L Sbjct: 3 SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFIFDRHILDDLEDKKDLRVAYIYAALQ 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--------QRVTKLFYNRQYEINEVR 118 Q+Q+SL+ Q +D + + +V ++ N YE + Sbjct: 62 QIQQSLAD---DLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNHDYEPYARQ 118 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD+ +++ L + + SF D V+ +L +A + Y V+TP+ K +L A L+ Sbjct: 119 RDEKVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAHLQER 178 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V + +P +D + K+ V Y + RD P Sbjct: 179 LVASHAQNLLKLSPQLPLMPLEKTGFVDINKS-------FSSKTIKKQLVIDYQQNRDFP 231 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A+QGTS+LS +L G +S R+ ++ +WLNELIWREFY ++ Sbjct: 232 AVQGTSRLSVHLRFGTVSIRKIVKAAQKYS-----------DTWLNELIWREFYMMILYS 280 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P V K F P + I+W + + W +G TG+PI+DA MR+LNT G+MHNR+RMIT Sbjct: 281 FPHVVD-KSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMRELNTTGFMHNRVRMIT 339 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +LLD DL++NNGGWQWAA +G D+ PYFR+FNP Q ++ Sbjct: 340 ASFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAAPYFRVFNPYAQTEK 399 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA- 476 FD Q +IR W+PE +LS YP PIV+HK A L+ Y A Sbjct: 400 FDKQRQYIRQWVPEF------------------ELSR-YPAPIVEHKFARQRALDTYKAG 440 Query: 477 AKKQSLL 483 K++ + Sbjct: 441 LSKEATV 447 >gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis] gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis] Length = 537 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 121/495 (24%), Positives = 187/495 (37%), Gaps = 34/495 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60 L+W R LR+ DN AL A S V VF+ P + F Sbjct: 8 SLMWFRKGLRVHDNPALDYASKGSKF-VYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRF 66 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-----SYCLQQRVTKLFY------- 108 + SL+ + SL + G + I L C + + Sbjct: 67 LLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVK 126 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 + I + L S L A Q +P + Sbjct: 127 EYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPLPTTISSL 186 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 D+ S + + + ++ + PF+ + ++ I K Sbjct: 187 PPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESE--ALKRLREKITNKEWVANFE 244 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 T+ LSPYL G LS R + L++ + ++ S L +L+WR Sbjct: 245 KPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSPPV-SLLGQLLWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F+ + P+ K ++I WN+D LL AW++ TG+P IDA M QL GW Sbjct: 304 DFFYTVAFGTPNFDQMKE-NRICKQIPWNEDDELLSAWREARTGYPWIDAIMVQLRKWGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 MH+ R A FL + DL V W G F L+D D A NNG W W + + Y R Sbjct: 363 MHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLWLSCSSFFYQ-YNR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 I++P GK++DP G +I+H+LP L ++P +YI+ P + K + +YP P+V Sbjct: 422 IYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRDYPKPVV 481 Query: 462 DHKKACHHTLNQYYA 476 H A + Sbjct: 482 AHDSASKECKKKLAE 496 >gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas albilineans GPE PC73] gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein [Xanthomonas albilineans] Length = 503 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 143/464 (30%), Positives = 211/464 (45%), Gaps = 15/464 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW R DLR+ D AL+AA V V++ +PE A ++ SL Sbjct: 31 MSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQRSLA 89 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L G + + L + +++NR+YE RD L++ Sbjct: 90 ALDAQLRACGSRLILRRGP----AEHALRQVIAECGAVAVYWNRRYEPATQPRDARLKRE 145 Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181 L+ S + ++L P + YKV+TPF ++ + P P Sbjct: 146 LRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPP 205 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L + + + GEQ A L F + YV RD P G Sbjct: 206 QALHSLALDALGLMSAHDWDRGFWECWQPGEQGAHEALDVFVDGALRDYVAGRDRPDQVG 265 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP+L G ++P + + L++ G ++ +L WR+F HL+ +P Sbjct: 266 TSRLSPHLHFGEIAPWRIVSALQQHRRAATGTAIDG---YIRQLGWRDFAYHLLHHFPHT 322 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + LQAW++G +G PI+DA +R+L GWMHNR+RMI AS+L Sbjct: 323 PERNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMIVASYL 382 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L V W G +F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FDPQ Sbjct: 383 CKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKFDPQ 442 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDH 463 G +I W+PEL +P AP + ++ +YP PIVD Sbjct: 443 GAYIARWVPELAALPVADRFAPWLVPQRLARVAPHYPRQPIVDL 486 >gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera] Length = 648 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 125/491 (25%), Positives = 193/491 (39%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A VFI P + + F+ L + Sbjct: 39 VHWFRKGLRLHDNPALREGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + + Sbjct: 98 SLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 153 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + S I+ + +ALI ++ P+ A L G T Sbjct: 154 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 213 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P N + ++ P++ GE AL L + + K + R Sbjct: 214 PLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 273 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + + S +++WREF+ Sbjct: 274 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 331 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 332 ATRNPNFDRME-GNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 390 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 391 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 449 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YP+P+VDH KA Sbjct: 450 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHSKAS 509 Query: 468 HHTLNQYYAAK 478 + + Sbjct: 510 QVNIERIKQVY 520 >gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 485 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 99/477 (20%), Positives = 175/477 (36%), Gaps = 24/477 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VW + DLR+ D+ L+ A V+ ++I P + S R FI SL + Sbjct: 2 VNVVWFKRDLRLQDHAPLHLALQKKQ-PVLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK L + ++ + + Q + +F +++ + + K L Sbjct: 61 QKQLEAYHTQVLIVE----GNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKLLF 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + ++ + + Q+L+ + Sbjct: 117 KSLSIQWKEFVN----NGVIRGLQNRKTWINLWENFMSQDLLYFSASLGQFENQNQIDSL 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 P G AL L+ F +++ Y + P A + S+LS Sbjct: 173 KGQLSPVDLSTERNL--NFQKGGRPTALRYLKGFLQDRYPNYQKNISKPLLARKSCSRLS 230 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++ GVLS R+ E K F + L W+ + Sbjct: 231 PYIAWGVLSMREVIQASIEIQDKTKHKQALSQFQ--SRLRWQAHFIQKFEMEYHAEFQN- 287 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F +E + L +AWK+G TGFP++DA+M+ L G+++ R+R + SF L Sbjct: 288 FNSAFNVLEKPYNKALAEAWKKGETGFPLVDASMKCLIQTGYLNFRMRALLVSFFTHLLW 347 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ + S LD + + Q A G + RI+NP + D G FI Sbjct: 348 QTWQEASSHLASLFLDFEPGIHYPQLQMQA--GTTGIHTLRIYNPVKNSYKHDLDGEFIL 405 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 +LP L +P +++H P L +YP PI++ H + + Sbjct: 406 TYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYPRPIIEMATTRQHASDSIWKI 462 >gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 509 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 188/489 (38%), Gaps = 30/489 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D++ L A N + ++ P + R F+Y S+ Sbjct: 4 KINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSICD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L++ +D L+S Q +T LF +++ +N Sbjct: 63 LNTQLARFNSRVYIFN----EDMQTLLESLHSQFEITNLFSHQEIGLNNT---------F 109 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + K++ + A+ K Q +QA + I+ Sbjct: 110 ERDIAIKAWCQHHHINWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLT- 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 +T P Q + G + A +++ F E+ Y + P+ S+L Sbjct: 169 LTDYQTPILPSAYTQDNEHFQHGGPRLAREVMQSFFAERGKGYQKGISSPSLSRTHCSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304 SPYL+ G +S RQ + + + K + ++ H M + S C Sbjct: 229 SPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAFVSRLHWHCHFMQKFESECTME 288 Query: 305 ----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P + + + ++ W QG TG PIIDA MR L G+++ R+R + SF Sbjct: 289 FKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINFRMRAMLVSF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + W+ + LD + + Q AS + R +NP Q + DP Sbjct: 349 VTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQDP 406 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G FI+ W PEL +P +Y+H P + L +YP P++D A + Sbjct: 407 TGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTTASKEARERL 466 Query: 475 YAAKKQSLL 483 + +++ + Sbjct: 467 WQYRERPDV 475 >gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM 5348] Length = 435 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 219/471 (46%), Gaps = 48/471 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASL 65 M V R DLR+ DN L A D +V+ VF+ P Q SA F+ SL Sbjct: 1 MPCAFV-FRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + L + Q + L ++ +++N Y + RD + + Sbjct: 59 LDLDMQLKHRSSRLHILQ----GYPEKVLPELKVE----AIYFNEDYTPFSLNRDNAIRE 110 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + +LL P + Y V+T F + V+ +++ + L Sbjct: 111 ---TMRGRVKSCEDLLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNYLTLD 167 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P T ++ P G Q L L + R+ P ++GT++L Sbjct: 168 LPGTEVLKLE--------VERGIPGGRQEGLKRLERARNLNYSM----RNFPGVEGTTKL 215 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY+ GV+SPR+ + + EE +L WR+FY L + P V G Sbjct: 216 SPYIKFGVVSPREVYWAVNEEIR--------------RQLYWRDFYTLLAYYNPHV-FGH 260 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + I W + L+AWKQG TG+PI+DA MR+LN G+MHNR RMITASFLVK L Sbjct: 261 SYKREYDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVL 320 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 VDWRIGE YF ++L+D D + NNG WQW ASTG D + FR+FNP +Q ++FDP +I Sbjct: 321 HVDWRIGERYFATKLVDYDPSVNNGNWQWVASTGADYM--FRVFNPWLQQRKFDPDAVYI 378 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + W+PEL ++P + IH + + YP PIVD+ + Y Sbjct: 379 KTWVPELKDLPAEKIHEIYRFKVS-----GYPSPIVDYSEEVKKARKMYED 424 >gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex HEL-45] Length = 473 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 145/476 (30%), Positives = 217/476 (45%), Gaps = 25/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++D+ AL AAC VI +FI + + A + +L + Sbjct: 8 IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDN---QSDALGAAPKFRLGLALACLGD 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +KG + D+++ L Q ++++R Y+ + RD ++ L+ Sbjct: 64 TLKEKGSRLILRR----GDALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119 Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185 + + P ++ YKV+TP+ K++ + + Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPLATPSEIRAPEDWPDS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P +GE A L F + V Y E RD+P GTS L Sbjct: 180 DVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDESRDMPGEDGTSGL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G +SP CW+ + + GA ++L EL WREF HLM P + Sbjct: 240 SENLSLGEISPAHCWHAGQRAMQEGK----RGAETFLKELAWREFAYHLMYHTPRILDQN 295 Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W ++ + AWKQG TG P +DAAMR+L G MHNR RMI AS+L K Sbjct: 296 WREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMHNRGRMIVASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ WRIG+++F L+D D A+N GWQWAA +G D+ P+FRIFNP Q RFD + Sbjct: 356 LMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFNPETQLDRFDKGRNY 415 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R W+ E P++ P W + D +YP PIVD + L+ Y Sbjct: 416 TRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSEGRARALDAYR 469 >gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum] gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum] gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum] Length = 535 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 188/493 (38%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P + + F+ L + + Sbjct: 20 VHWFRRGLRLHDNPSLREGLKGA-RTFRCVFVLDPWFAGSSNVGINKWRFLLQCLEDLDR 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD L Q Sbjct: 79 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I++ + A+I + PV L G T Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMT 254 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 255 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAF--PPLSLHGQLLWREFFYCA 312 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+K++ L W G TGFP IDA M QL GW+H+ R Sbjct: 313 ATKNPNFDKM-IGNPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 371 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 372 HAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPIK 430 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N+P+QYIH P + + K + +Y LP+V+H A Sbjct: 431 FGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAAS 490 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 491 RVNIQRMKQVYQQ 503 >gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24] Length = 458 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 216/476 (45%), Gaps = 25/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ + + + L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D +E + + + ++ + RR++LL Sbjct: 60 DLDSGLRDRGGRLVVRS----GDLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115 Query: 127 LQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + +L PGS+ + + V+TP+ + + V+ L R+ Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPL----AAPRRV 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P + P + P P GE++A L + + + Y + D A TS Sbjct: 172 RVPDGVGSEPLPARGDLTGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 232 RLSPDLHLGALSPVELVHRARRAGG-------PGAEAFVRQLAWRDFHHQVLAARPHASA 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 AW+ G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR+G +F+ L+DGD+A+N WQW A TG D+ P+ R+ NPT Q +RFDP G Sbjct: 345 TLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFDPGGA 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL + + +H P YP PIVD + L+++ A+ Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRAR 455 >gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 694 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 140/505 (27%), Positives = 227/505 (44%), Gaps = 34/505 (6%) Query: 1 MKATTAMS--------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52 M A+ +MS +VW R DLR+ DN A AA + +V+ ++ PE+ + Sbjct: 1 MSASLSMSGGAGEAATRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYY 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 ++ SL + SL + G + + D++ L T LF+N Sbjct: 60 PGRVSRWWLSQSLKHLDASLRRLGASRLVTRRST---DTVAALLELVRSTGATHLFFNHL 116 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170 Y+ + RD +++ L I +S L P +L+ + ++T F + +V Sbjct: 117 YDPLSLVRDHRVKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLC-MV 175 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKE 225 LP I S+ F+ + + + G QNA F Sbjct: 176 DPPAPMLPPKRINSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFING 235 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSW 281 + Y R TS LSPYL G LS R+ +++++ + + + G + Sbjct: 236 PLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLF 295 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L + RE+ R+L +P KP + W + + W+QG TG+P++DA MR Sbjct: 296 LRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMR 354 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 355 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPD 414 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L N Sbjct: 415 GRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSN 474 Query: 456 YPLPIVDHKKACHH---TLNQYYAA 477 YPLPIV+ +A L++ + Sbjct: 475 YPLPIVELDEAKSRLQDALSEMWEL 499 >gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior] Length = 671 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 185/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 26 VHWFRKGLRLHDNPSLKEGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 85 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKEL 140 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + ++ + + + V A + T Sbjct: 141 GISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIGSAYT 200 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 201 PLKDDHDDHYGVPTLEELGFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 260 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 261 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 318 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 319 ATKNPNFDKMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 377 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 378 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 436 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + Y LP+V+H K+ Sbjct: 437 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKSS 496 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 497 RINIERMKQVYQQ 509 >gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio] gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio] Length = 639 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 112/501 (22%), Positives = 193/501 (38%), Gaps = 35/501 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MSV+ + W R LR+ DN AL A + +D + V+ P + + F+ SL Sbjct: 1 MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + +V++L + E RD ++K Sbjct: 60 EDLDASLRKLNSCLFVIR----GQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115 Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V L I+ + + L+ ++ D + Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIG------EQNALHILRKFCKEKV 227 VTP + Y ++ ++P G + Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTVAWQE 235 Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + + LSPYL G LS R + +L + + + S ++++ Sbjct: 236 NFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVKKNMNPSI-SLYDKIL 294 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ P + P +I W++++ L W + TGFP IDA M QL Sbjct: 295 WREFFYTAATNNPRFDRME-GNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQE 353 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL + W G + F LLD D + N G W + + + Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFF-QQF 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 F + P G+R DP G FIR +LP L + P +YI+ P + K + ++YP P Sbjct: 413 FHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCVIGVDYPKP 472 Query: 460 IVDHKKACHHTLNQYYAAKKQ 480 +V+H +A + + +Q Sbjct: 473 MVNHAEASRLNIERMRQIYQQ 493 >gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 509 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 102/496 (20%), Positives = 195/496 (39%), Gaps = 34/496 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK +++VW + DLR++D++ L A N + ++ P + R F Sbjct: 1 MKEK----INIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRF 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +Y S++++ L++ + + L+S +Q + +F +++ +N Sbjct: 56 VYQSIVELNNQLARFNACVYIFNL----NMNDLLESLKMQFEIVNIFSHQEIGLNNT--- 108 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + K++ + A+ K Q +QA + Sbjct: 109 ------FERDKVIKAWCQHNHINWQESQTGAVIRGKKNRNNWNERWQQTMQAPIAVPNWK 162 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-- 238 +I+ T + P Q D G +A +++ F E+ Y + P+ Sbjct: 163 SIK-TITLNNYQAPELPSAYTQDHDSFQQGGPLHARTVMQSFFAERGKGYQKGISSPSLS 221 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G +S RQ + +E+ + + ++ H M + Sbjct: 222 QTHCSRLSPYLAWGNISLRQVYQMAIDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKF 281 Query: 299 PSVCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 S C + + + ++ W QG TG PIIDA MR L G+++ R+ Sbjct: 282 ESECSMEFLALNPGYHVFPYRNDERVKNDIERWAQGQTGIPIIDACMRCLKATGYINFRM 341 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + SF+ L + W+ + LD + + Q AS + R +NP Sbjct: 342 RAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIK 399 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467 Q + DP G+FI+ W PEL +P +Y+H P + L +YP P++D A Sbjct: 400 QSEDQDPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTAAS 459 Query: 468 HHTLNQYYAAKKQSLL 483 + + ++++ + Sbjct: 460 KEARERLWQYRERADV 475 >gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM 1251] gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas denitrificans DSM 1251] Length = 445 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 197/473 (41%), Gaps = 39/473 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L +V+ +FI ++ ++ FI+ LL+++ Sbjct: 4 VLWFRRDLRVKDNPLLTL-----GGEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L G+ + + + + + + + + KL + L Sbjct: 59 DLQHIGLDLKIF----YGTPEAVFEHLSKFDEVVASGDYDSYAKSRDLHISHKLHFRYLH 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIR 183 I K IL Y V+TPF K +++L + + + Sbjct: 115 DTYIFKPK---------EILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQNILIGSD 165 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G ++I A + K+ + Y + RD + +S Sbjct: 166 YEGITKVDIGITKLSLAIESIGFKAQNLNIIAPQKKLENFKKNISKYSQMRDFLDVDISS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS L G +S R+ + + ++ +LI+R+FY + + P V Sbjct: 226 SLSVDLRFGTISIREVLLEVLKLAEVS--------EPFIRQLIFRDFYAYALFHTPHVES 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + A+ TG PI+DA +R+L G+MHNR+RM+ ASF K Sbjct: 278 ENYKYSFNGIEDK----EKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVRMVVASFFTK 333 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+ W+ GE +F LLD D ASN WQW+A TG D PYFRIFNP +Q K+FD + Sbjct: 334 DLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQSKKFDKEAL 393 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ ++ EL+ + + IH L + +YP PIV HK+A + + Sbjct: 394 YIKRYVSELSTIEIKNIHKEEYLLCADI--KDYPKPIVTHKEASKRAVELFKK 444 >gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843] Length = 485 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 127/484 (26%), Positives = 225/484 (46%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++A+Y A ++I + Q+ ++ F+ S+ Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQE-QFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL G + + + + ++ K++Y+++ E+ +K + K Sbjct: 63 ADLRQSLESLGGNLIIRR----GKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNK 118 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSLPV 179 L + K+F + L P + Q+ +++T FRK + ++ + + Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKL 178 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD-I 236 P I L + +++ + F GE ++++ + Y E R+ + Sbjct: 179 PKIELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNEM 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ S +LS G LSPR + +++ + + + EL+WR+F+R + Sbjct: 239 LGTNYSSKFSAWLSFGCLSPRYIYEEVQKY--EQTRVKNDSTYWLIFELLWRDFFRFMCR 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + K + + W +D W +G TG+P++DA MR+L G+M NR R Sbjct: 297 KHGNKIFYKSGL-QELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQN 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L +DW +G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 356 VASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQSK 414 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G ++RHWLPEL + IH P+ + L +NYP PIVD ++ H Sbjct: 415 DYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKHN 474 Query: 471 LNQY 474 Y Sbjct: 475 EKIY 478 >gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis TAC125] Length = 503 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 103/490 (21%), Positives = 189/490 (38%), Gaps = 30/490 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +++VW + DLR++D++ L A N + ++ P + R F+Y S++ Sbjct: 1 MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L++ + D L+S Q + +F +++ +N Sbjct: 60 ELNNQLTRFNACVYIFNLNMGD----LLESLKTQFEIVNIFSHQEIGLNNT--------- 106 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + K + + A+ K Q +QA + +I+ T Sbjct: 107 FERDKAIKVWCQHNHINWQESQTGAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIK-TI 165 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + P Q D G A +L+ F E+ Y + P++ S+ Sbjct: 166 TLNNYQAPELPSAYTQNHDSFQQGGPLQARTVLQSFFAERGKGYQKGISSPSLSQVHCSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G +S RQ + +E+ + + ++ H M + S C Sbjct: 226 LSPYLAWGNISLRQVYQMAFDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECSM 285 Query: 305 KPFIPWTEKIEWNKDSHLL-----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + W QG TG PIIDA MR L G+++ R+R + S Sbjct: 286 EFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRAMLVS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F+ L + W+ + LD + + Q AS + R +NP Q + D Sbjct: 346 FVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 P G+FI+ W PEL +P +Y+H P + L +YP P++D A + Sbjct: 404 PTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASKAARER 463 Query: 474 YYAAKKQSLL 483 + ++++ + Sbjct: 464 LWQYRERADV 473 >gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis] Length = 625 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 125/491 (25%), Positives = 192/491 (39%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A VFI P + + F+ L + Sbjct: 40 VHWFRKGLRLHDNPALKEGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 98 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + + Sbjct: 99 SLRKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 154 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + S I+ + +ALI ++ P+ A L G T Sbjct: 155 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 214 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + ++ P++ GE AL L + + K + R Sbjct: 215 PLTDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 274 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + + S +++WREF+ Sbjct: 275 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVK--RVRPPLSLHGQILWREFFYCA 332 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 333 ATRNPNFDRME-GNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 391 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 392 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 450 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FIR ++P L N+PT+YIH P + + + +YPLP+VDH KA Sbjct: 451 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPLPMVDHSKAS 510 Query: 468 HHTLNQYYAAK 478 + + Sbjct: 511 QVNIERIKQVY 521 >gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM 16994] Length = 455 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 203/476 (42%), Gaps = 33/476 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLRI DN L + +V+ +FI P R+ IY +LL ++ Sbjct: 4 ILWFRRDLRIEDNPLLSL-----EGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL +G+ + ++ + ++ + Y+ + RD+ + L Sbjct: 59 SLQMRGLDLALF----YGKPVDVFKWLLSRHHFDEVCASGDYDHYALERDREISHLLP-- 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 S DD+ + P I+ + Y V+TPF +R LT Sbjct: 113 --FNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---------YYVEQRDIPAIQG 241 S + IG + R+ + +Y + RD A+ G Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQSSPAIQLDQFASKIAHYSQDRDYMALNG 230 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS L G LS R + + + +LI+REFY L+ +P + Sbjct: 231 TSGLSTQLRFGTLSVRAVLRWMLIQKKRGSDT-----EPFFRQLIFREFYAMLLYHFPHL 285 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P+ + A+ TG PI+DA +R+L G MHNR RM+ ASF Sbjct: 286 SEQNFRYPF----RGIANEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLCASFF 341 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K+LL+ W+ GE +F L D D ASN WQW+A TG D PYFRIFNP QGK+FD Sbjct: 342 TKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKKFDSD 401 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 G +IR W+P+L +V + +H + L L +YP PIV K + L+ + + Sbjct: 402 GVYIRRWMPQLASVSSTTLHN-ETALFSLTL-CDYPHPIVYQKTSAKRALDHFKSI 455 >gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti] gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti] Length = 553 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 117/507 (23%), Positives = 198/507 (39%), Gaps = 40/507 (7%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQS 58 MS + W R LR+ DN AL AA + VFI P + + + Sbjct: 1 MSSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRW 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ +L + ++L + + + ++ + V+ L + E ++ Sbjct: 61 RFLQQTLADLDRNLRKINSRLYVVR----GNPVDVFPKLFQEWNVSFLTFEHDIEPYSIK 116 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 RD +E++ + + + S+ + + T + + + ++ Sbjct: 117 RDATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIPEPVAT 176 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI-------------DPMFPIGEQNALHILRKFCKE 225 I + R + + FP GE AL L K Sbjct: 177 PKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMKR 236 Query: 226 KVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K + ++ + T+ LSPY+ G LS R L+ K S Sbjct: 237 KSWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMRELQTVI--KGQKHSQPPVSL 294 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L+WREFY A P+ + W+ + L+AW G TG+P IDA MR Sbjct: 295 IGQLMWREFYYCAAADEPNFDKM-VGNSICLHVPWDSNKEFLEAWTHGRTGYPFIDAIMR 353 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 354 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGNWMWLSASAF 413 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 YFR+++P GK+ DP+G FI+ ++PEL P+ I+ P + Sbjct: 414 FHQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEPWKASVDVQKKLGCIIGK 472 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP IV H++ + + A +++ Sbjct: 473 DYPNRIVIHEEIHKKNIQKMTEAYRKN 499 >gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus purpuratus] Length = 516 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 121/493 (24%), Positives = 188/493 (38%), Gaps = 31/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ ++I P + F+ L + Sbjct: 21 VHWFRKGLRLHDNPALKEGLKSASG-FRCIYILDPWFAGSCSKGVNRWRFLLECLEDLDS 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + +VT+L + E RDK + Q Sbjct: 80 SLRKLNSRLFLIR----GQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + S L + T R I +L+ + + Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAEDVEGLDT 195 Query: 191 SNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P P PM+ GE A L + + K + +R + Sbjct: 196 FIDPNHEDKYGIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMS 255 Query: 239 ----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + + LSPYL G LSPR + +L E + + + S +L+WREF+ + Sbjct: 256 PASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQKVRKTTNTPL-SLHGQLLWREFFFTV 314 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P +I W+K++ LL W G TG+P IDA M QL GW+H R Sbjct: 315 ACNNRQFDHMVD-NPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLAR 373 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + + +F + P Sbjct: 374 HAVACFLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIWLSCS-SFYQQFFHCYCPVK 432 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G+R DP G ++R +LP L N P++YI P + K + +YPLPIVDH +A Sbjct: 433 FGRRTDPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEAS 492 Query: 468 HHTLNQYYAAKKQ 480 H + + Sbjct: 493 HRNIERMRKVYNN 505 >gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5] gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter cryohalolentis K5] Length = 541 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 188/516 (36%), Positives = 259/516 (50%), Gaps = 50/516 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W R DLR+ DN AL A C ++ A++ AVF TPEQW+ H +S Q I +L Sbjct: 25 LMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLPI 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L Q I+ C +F D I L + C ++ + N +YE NEV RD+LL K+L Sbjct: 85 LAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQL 144 Query: 128 QHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + PP SI + MY+V+TPF K L +D++ AI Sbjct: 145 ANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDNK 204 Query: 187 PVTPSNIPRFFDYPFQAIDPM--------------------------------FPIGEQN 214 V + + +P GE Sbjct: 205 QVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEAE 264 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 A H L F + + Y RD+P++Q TSQLS YL+IG +SPR C+ + + L Sbjct: 265 ACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRND 324 Query: 275 KSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA- 325 W++EL WR+FYRH++ + P + + + T+K A Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFAA 384 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W++G TG P++DAAMR LN G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASNNGGWQW+ASTG DS PYFRI NP Q K D +G FI+ WLPEL +PT +H Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHREDK 504 Query: 446 WLDKND-----LSLNYPLPIVDHKKACHHTLNQYYA 476 ++YP+PIV+HK A + ++ Sbjct: 505 MRKALSKNGTFADIDYPVPIVEHKLARQLVIAEFKK 540 >gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002] gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002] Length = 514 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 202/492 (41%), Gaps = 31/492 (6%) Query: 8 SVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 SV+++ W R DLR+ D++ L A A++ + P + A + F+ Sbjct: 3 SVNILLWYRRDLRLHDHQPLQEALAQ-QAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFL 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++++L KG Q D + + C Q ++ ++ +R+ E R ++ Sbjct: 62 REAIQDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVER 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L + LQ + + L L + + ++ Sbjct: 118 KLRQALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQ 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE---------QNALHILRKFCKEKVYYYVE 232 + + P G + +++ Y E Sbjct: 178 LPPLPETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKE 237 Query: 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ +S+ SP+L++G LS R ++ E + + + + EL+WR+++ Sbjct: 238 TRNGLLGADYSSKFSPWLALGCLSARYIAAQVAEY--EQKRIANNSTYWLIFELLWRDYF 295 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R + A + + + + W +D + W+ G TG P +DA MR+L G+M N Sbjct: 296 RWICAKHGNQIFQPEGLQGVKI-PWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFMSN 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R SFL K+L +DWR G +F SQL+D D+ SN G W + A GND+ FR FN Sbjct: 355 RGRQNVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNI 413 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465 Q K +DPQG ++RHWLPEL +P + IH P K L YP P+VD + Sbjct: 414 PKQAKDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDLQT 473 Query: 466 ACHHTLNQYYAA 477 + Y A Sbjct: 474 SVQENERIYQKA 485 >gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma proteobacterium IMCC3088] Length = 499 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 174/479 (36%), Gaps = 21/479 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW + DLR+ D+ L AA + + +++ PE S R F+ SLL++ Sbjct: 8 QVVWFKRDLRLEDHAPLAAAAN--GKPTLLLYVFEPELMNDPHYSERHWRFVTQSLLEMN 65 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + +E LD+ ++ L + + + Sbjct: 66 GRLEPLNQRVYILK----GSMLEVLDAIHAHNPISNLLSHEETGLRVTYERDKAISTWCR 121 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + + + ++ + + +PA ++ Sbjct: 122 QHRVNWQEYQSNGVKRGRYSRDGWAHDWH-----RVMSQPLAEPEWAQLLPAEDQQRCLS 176 Query: 190 PSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + DP +G + K+Y+ + + + + S+LS Sbjct: 177 DYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKALSKPLLSRKHCSRLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G LS RQ + RL+ E + + L W + +P Sbjct: 237 PYLAWGNLSIRQVYQRLQAE--RGRSGWGRALSALNSRLHWHCHFIQKFE-SEDRIEFEP 293 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + QAW G TG P +DA +R L G++H R R + S L + Sbjct: 294 MNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNTGYLHFRGRAMIVSALCHLMQ 353 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ LD + + Q G + RI+NP QG DP FI+ Sbjct: 354 GRWQFAARQLAQWFLDFEPGIHYAQIQ--MQVGLTGINTLRIYNPVKQGLDHDPDAVFIK 411 Query: 427 HWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 W+PEL+ +P +H P +++ + +NYP P++D +A Y+ ++ L+ Sbjct: 412 KWVPELSELPVPLVHTPWELGPIERACMDMNYPDPVIDIAQAHKAARALYWDRRQNPLV 470 >gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi] Length = 558 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 111/501 (22%), Positives = 195/501 (38%), Gaps = 38/501 (7%) Query: 11 LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LRI DN AL A + + +F+ P + + + F+ +L Sbjct: 8 IHWFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRFLQQTL 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + ++L + + ++ + V+ L Y E V+RDK +E Sbjct: 68 VNLDENLRTINSRLYVVR----GNPVQIFPELFDRWNVSLLTYEHDIEPYAVQRDKTVEG 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + S + + T + + + L + Sbjct: 124 HAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQKLPGK 183 Query: 186 G--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKEKV 227 G P + ++ FP GE L + Sbjct: 184 GVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRKAWICS 243 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + T+ LSPYL G LS R ++R++E K S + +++W Sbjct: 244 FEKPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETI--KGQKHSQPPVSLIGQMMW 301 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE + + +A +++W+ + L AW +G TG+P IDA MRQL G Sbjct: 302 RE-FYYCVAAVTPNFDKMSGNDVCIQVDWDTNKEYLNAWTEGRTGYPFIDAIMRQLRQEG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G+ F LLD D A N G W W +++ YF Sbjct: 361 WIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQ-YF 419 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 R+++P GK+ DP+G +I+ ++PEL P+ I+ P + + +YP I Sbjct: 420 RVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGKDYPKRI 479 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V H++ + + AA +++ Sbjct: 480 VVHEEISKTNIQRMSAAYRRN 500 >gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5] Length = 440 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 210/457 (45%), Gaps = 31/457 (6%) Query: 7 MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M+ +V DLR+ D+ AL AAC D +V+ +++ P + +S ++ F++ S Sbjct: 1 MTGRTAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQS 56 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLL 123 L ++++L ++G + +++ + + R +L Sbjct: 57 LADLREALRKRGGDLVIRRGDPVAETV----KLARKVGAEGVGLSADVSRYAHRRERRLR 112 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + +HR+ + F ++ PG++ Y+V++P+ +A +R A Sbjct: 113 AECDRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQ------GVRWRDELAAP 166 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P P + P +G + + Y + D A TS Sbjct: 167 KRVRLPDGVDPGRLPDPPKGDSPDAAVGGEAVARRRLTAWLPTLDRYDDIHDDMAGDETS 226 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G +SP + ++ +L WR+FY ++A +P + Sbjct: 227 RLSPYLRFGCVSPLAV-----------ATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLST 275 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 E D H AW +G TG PI+DA MRQL GWMHNR R+ITA +L K Sbjct: 276 VAYRRGAREDWRD--DPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR G E F LLDGD +N+G WQW A TGND+ PY R FNP Q +R+DP G Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 ++R W+PEL +V + +H P D+ +L+YP P+ Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429 >gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM 7299] Length = 443 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 224/473 (47%), Gaps = 32/473 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DNK L A + V+ +FI + ++ FIY ++L ++ Sbjct: 3 QILWFRRDLRIIDNKILEKASNE----VLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 KSL + G+ FD + F + +K++ Sbjct: 59 KSLQELGLDLYIF----FDTPKNVFTKLKNE-----GFDEVLCSCDFDSYSIKRDKQINE 109 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + K + DS L+ P L YKV+TPF + L +D + L Sbjct: 110 ILPLKRYLDSFLINPNKNLKKDGTPYKVFTPFY-KSLSWLTSSDKIGEAMINPNLKLSKY 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + P + F+ + P + + KEKV Y + RDI GTS L L Sbjct: 169 ENKTPTLDELGFERV--TLPEFLKKSPQNRLDDFKEKVKEYEKNRDIFYKDGTSNLGVDL 226 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G LSPR +N +K+ + + +++ +L WREFY +++ +P+ Sbjct: 227 RFGTLSPRMIFNEIKKSDKE-------NSEAFIRQLFWREFYNYILFHFPNSENENW--- 276 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 +I W++D Q W +G TG PIIDAAMR N G MHNRLRMI +SFL K+LL+DW Sbjct: 277 NGIEISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHNRLRMIVSSFLCKNLLIDW 336 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GE+YF +LLD + +SN G WQWAASTG DSVPYFRIFNP +Q +FD + FI+ + Sbjct: 337 KKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNPYLQSAKFDKEAIFIKSVM 396 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 PEL +V + IH + L Y IVD K + + + AK + Sbjct: 397 PELKDVDAKLIH------IEGALKDKYVNSIVDIKYSRDRAMRIFKEAKNAKV 443 >gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus 5a2] Length = 486 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 228/479 (47%), Gaps = 23/479 (4%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 +LR D L ++ +I +FI P+ + + ++Y S+ ++ Sbjct: 10 FYQNLRFHDQPLLLEVLQHTQ-PIIPIFINDPKVIER--LGEASQWWLYQSIRAFKQQWK 66 Query: 74 -QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 I DS+ L + K++ ++Y E D+ + + L I Sbjct: 67 SAYNIELILRT----GDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNRDGI 122 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVPAIRLTG 186 K F+ +L P +I N ++++TPF K +L D + Sbjct: 123 TIKFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADLPAPDHIFNGYNQPINSD 182 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQL 245 ++ + + + + E AL+ L F K + Y RD I + +SQL Sbjct: 183 DLSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPSFSSQL 242 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G +S ++ +N + ++ + ++L E+ WREF +L+ +PS+ Sbjct: 243 SPYLRWGQISAKKIFNEVI-HTMERDPTIQQDGNTFLKEIGWREFSYYLLYHHPSMQEV- 300 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + + + LL+ W++G TGFPIIDA MRQL GWM NRLRMI ASFL+KDL Sbjct: 301 PLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASFLIKDL 360 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L++W+ G+ +F+ L+D D A+N WQW A G D+ PYFRIFNP QGK+FD +G +I Sbjct: 361 LINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFDSEGKYI 420 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 R ++PEL ++PT+YIH P + +YP PIVDH + L+ + K Sbjct: 421 RKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDCWKEFK 479 >gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286] Length = 483 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 114/490 (23%), Positives = 190/490 (38%), Gaps = 36/490 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 MS LVW R DLR DN L A +D V+ ++ + + ++ F+ Sbjct: 1 MSTVLVWFRRDLRCHDNATLRRAVAEADT-VVPLYCLPDRLTGEGMFGLDRVGPHRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL +++SL + D + + +++ E Sbjct: 60 IESLADLRESLRDRDGELYVRS----GDPGTVVPEAAEEFDADAVYWQALPGPEERDEAG 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNH-----ALQMYKVYTPFRKALIQNLVQADLRS 176 + L I + L L + Sbjct: 116 SVRAGLADAGIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEW 175 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P ++P D+ F + ++V YV +RD Sbjct: 176 VHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGLDRVATYVWERDC 235 Query: 237 PAI-----------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +S+ SP+LS G LSPRQ +++ D + + + EL Sbjct: 236 LREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRVEND--STYWLVFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+F+++ +A Y + I + I W +D + W +G TG P +DA MR+LN Sbjct: 294 TWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETGIPFVDANMRELNA 353 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++ NR R ASFL +L +DWR+G YF S+L+D D+ASN W + + GNDS Sbjct: 354 TGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNWAYQSQVGNDSRDS 413 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459 + F Q +DP+G ++ W PEL+ +P +Y+H P + + L +YP P Sbjct: 414 Y--FEIVGQATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQADYGVELGTDYPAP 471 Query: 460 IVDHKKACHH 469 ++D + + Sbjct: 472 MIDLEASYEK 481 >gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 196/498 (39%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + + +L Y E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + + + + A + Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + + +++ ++P GE AL L + + K + + Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like) [Ornithorhynchus anatinus] Length = 582 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 119/485 (24%), Positives = 191/485 (39%), Gaps = 31/485 (6%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R+ DN AL AA + V V+I P + + F+ SL + SL + Sbjct: 20 RLHDNPALQAALRGA-RSVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 78 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 + + + VT+L + E RD + K + + ++ Sbjct: 79 LFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134 Query: 139 SVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 S I+ Q + +A+I + V + ++ G Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194 Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----T 242 Y +++ ++ GE AL L K + K + +R Sbjct: 195 TYGVPSLEELGFPTDGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASP 254 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPYL G LS R + RL + + + S +L+WREF+ P Sbjct: 255 TGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLYGQLLWREFFYTAATNNPRFD 313 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 314 RME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 372 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL V W G F LLD D + N G W W + + +F + P G+R DP Sbjct: 373 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPS 431 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 432 GDFIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMK 491 Query: 476 AAKKQ 480 +Q Sbjct: 492 QIYQQ 496 >gi|219888079|gb|ACL54414.1| unknown [Zea mays] Length = 688 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 26/491 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + +VW R DLR+ DN A AA + +V+ ++ +PE+ + +I SL Sbjct: 1 MRI-VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLN 58 Query: 67 QVQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + G + + D+ L T +++N Y+ + RD+ L++ Sbjct: 59 HLDASLRRLGAGKLVTRRSA---DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKE 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L I +S L P +++ Q + ++ PF + LP I Sbjct: 116 MLAAEGIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINS 175 Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + F+ + + + G QNA L F + Y R Sbjct: 176 GDLSMCPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADS 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSP+L G LS R+ ++ ++ + + + +L + RE+ R+L Sbjct: 236 ASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLS 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +PS +P + W D + W+QG TG+P++DA MR+L GW+H+R+R+ Sbjct: 296 FNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASF VK L + WR G +YF LLD DL S+ GWQ+ + D RI NP +G Sbjct: 355 VVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEG 414 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC-- 467 +FDP G ++R W+PEL +PT++IH P +L NYPLPIV+ A Sbjct: 415 YKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGR 474 Query: 468 -HHTLNQYYAA 477 L++ + Sbjct: 475 LQAALSEMWQL 485 >gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 434 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 204/471 (43%), Gaps = 44/471 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L W R DLRI DN LY A + +VI +FI E ++ + I +L Sbjct: 3 KVTLFWFRRDLRIQDNCGLYHALK-GENRVIPIFIFDKEILKKLPKQDARVEMILLALGA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++ + + + Q + K+ N YE RD ++ L Sbjct: 62 IDIAMKRN----RCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLL 117 Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + ++ YKVYTP+ + ++ + L+ P + Sbjct: 118 EAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYPSEVELDSL 177 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S + +F + Y R+ PA+ TS+L Sbjct: 178 ASNESLPDLNLSDLGFETSGIAQP--------EYRFDDTLIDQYEATRNFPALDQTSRLG 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G +S R+ N+ ++L ELIWREF+ ++ +P K Sbjct: 230 AHLRFGTVSIRRLVNQASSR----------SNNTFLKELIWREFFMQILWHFP-YTQQKS 278 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P E+I W + + W G TG+P++DA MR+LN G+MHNR+RM+ SFL K LL Sbjct: 279 FKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHLL 338 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR GE YF +LLD +++SN G WQW A G D+ PYFRIFNP+ Q K+FD Q +I+ Sbjct: 339 IDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQLQYIQ 398 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+P + +YP PIVDHK A L Y A Sbjct: 399 KWVPNFQEL-------------------DYPSPIVDHKYARERCLTTYKEA 430 >gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9215] Length = 497 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 106/477 (22%), Positives = 187/477 (39%), Gaps = 31/477 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+ALY + ++D ++ ++I E W Q S RQ F S+L + Sbjct: 4 INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL + G + I + + V ++ +++ + K Sbjct: 62 RNSLKEIGQPLIIRT----GNVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWA 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +N K + LI+ ++ + + Sbjct: 118 ANKKIIWREFLQFSVFRGNINRDDWSKKWKKNTERELIKRPLR---------ISPIDFDI 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 + F + G + + ++ F EK+ Y + P S+LS Sbjct: 169 GEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSRLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY+S G +S ++ + + + + + + L W + + P + Sbjct: 229 PYISWGCISLKEIFY-------KANLNKNNNSIMFKSRLTWHCHFIQKLESEPELEFCD- 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P+ + LL W QG TG+P IDA MR LN GW++ R+R + SF +L Sbjct: 281 FHPYFKNSRTKNT-ELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ ++ +D + + Q +G S+ RI+NP QGK DP+G FIR Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPEGEFIR 397 Query: 427 HWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL NV +IH P L Y PIVD K + ++ Sbjct: 398 KWVPELKNVAIDFIHEPWILSKFNCDEYAKLEYIKPIVDISKTSREARKKIQEITQK 454 >gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74] Length = 487 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 131/490 (26%), Positives = 209/490 (42%), Gaps = 38/490 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHF 60 M+ L W RNDLR+ DN+ A N+D +V+ VF+ P + +H +SA +++F Sbjct: 1 MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + S+ +++SL +G + L + T ++ +++ E ++ Sbjct: 60 LLESVADLRQSLRSRGADLIVR----VGKPADVLAELAGEIGATAVYASKEVTHEETTQE 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L +L+ I L L + + ++ Sbjct: 116 TKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPT 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNA--LHILRKFCKEK 226 I L + P IP F D F GE A + + Sbjct: 176 RIELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQTDL 235 Query: 227 VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y E R+ +S+ S +L+ G LSPR+ + + + + + + EL Sbjct: 236 IATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETERV--RNESTYWLIFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+F+R + + + + I + +D L Q W +G+TG P IDA MR++N Sbjct: 294 LWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMREMNA 353 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R ASFLV DL +DW G YF S+L+D D SN G W + A GND + Sbjct: 354 TGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGNDPRQF 413 Query: 406 ----FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455 R FN Q R+D QG +++HWLPEL VP + +H S + L + Sbjct: 414 SNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVVLGQD 473 Query: 456 YPLPIVDHKK 465 YPLP+VD K Sbjct: 474 YPLPVVDPNK 483 >gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM 20109] Length = 457 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 135/471 (28%), Positives = 208/471 (44%), Gaps = 26/471 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + W R DLR++D+ AL AA + +V+A+++ P WR + ++ A Sbjct: 1 MPT-ICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRA--AGTPRLAYLAA 57 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + + G + + + Q + + + E RRD+ + Sbjct: 58 SLRSLDE---ATGGRLVVRH----GRADRVVPAVARQVGASSVHVSAATEPYGRRRDEAV 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E L V + PG + Y+V+TPFR A + + Sbjct: 111 EAALD--VPLVRTGCPYAVAPGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWA 168 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + P + P GE+ A F +E + Y R+ P + TS Sbjct: 169 ALASDGLPDAPATDV-------TLPPAGERAARERWHAFVREDLAGYDVDRNRPDLDVTS 221 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +S +L G + PR L + ++ +EL WREF+ ++ +P+ Sbjct: 222 WMSVHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAAR 281 Query: 304 G--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + +P AW G TG+P++DA MRQL GW+HNR+RM+ ASFL Sbjct: 282 TSLREVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFL 341 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VKDL + W+ G +FM L+DGD+ N WQW A TG D+ PYFR+FNP Q ++FDP Sbjct: 342 VKDLHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPD 401 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 GT++R W+PEL +VP + +H P + L YP +VDH L Sbjct: 402 GTYVRRWVPELRDVPDRAVHEPWTLP--GGLPAGYPERVVDHAHEREVALA 450 >gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster] Length = 540 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 127/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 66 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + I + P + FP GE AL + + K++++ Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKASLVDQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster] Length = 540 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 66 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + P + FP GE AL + + K++++ Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229] gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280] Length = 534 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 341 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 342 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV + Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 520 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 521 AARRRALDAFGAIR 534 >gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 130/490 (26%), Positives = 213/490 (43%), Gaps = 30/490 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62 LVW RNDLR+ D++ L+ A S + AV+ P Q+ Q +S+F+ Sbjct: 6 PTVLVWFRNDLRLHDHEPLHRALK-SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQ 64 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + +SL + G + + Q ++Y+R+ E+ ++ Sbjct: 65 QSVQNLAESLQKVGNKLLV----TTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERN 120 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L K+L I L L ++Q + I+ + P+ Sbjct: 121 LVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQ 180 Query: 183 RLTGP--------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 L P P P+ + A + +++ Y E R Sbjct: 181 LLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETR 240 Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +S+ SP+L++G LSPR + +K + + + EL+WR+F+R Sbjct: 241 NGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSND--STHWLIFELLWRDFFRF 298 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + Y + + + + W +D + W+ G TG+P++DA MR+LN G+M NR Sbjct: 299 VAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRG 357 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ASFL K+L +DWR G E+F S L+D D+ SN G W + A GND+ FR FN Sbjct: 358 RQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNIPK 416 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 Q +++DPQGT++RHWLPEL N+P IH P L ++YP P V+ ++ Sbjct: 417 QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSV 476 Query: 468 HHTLNQYYAA 477 + Sbjct: 477 E-ARRKIEQM 485 >gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans K601] Length = 516 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 97/489 (19%), Positives = 169/489 (34%), Gaps = 28/489 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+ D+ L A + V+ +++ P W Q + + F+ SL Sbjct: 1 MSYTVVWFKRDLRVHDHAPLVHAAAH--GPVLCLYVVEPSLWAQPDSALQHYQFLRESLR 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L G Q + E L Q +L + + Sbjct: 59 DLAQQLRSCGARLQL----ALGEVPEVLARLHALQPFARLVSHEETGNGATYARD----- 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L C+ + P + L + + +A +Q + +I L Sbjct: 110 LAVARWCRRQGVAWQEWPQHGVVRRLPSRERWHGLWQAHMQAPCLPPPLPASLRSISLPW 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244 T G +L F + +Y P T+ Sbjct: 170 SDTWPAPETMELADAHDPPQRQRGGRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACSR 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-------KSGAFSWLNELIWREFYRHLMAF 297 LSPYL++G L R+ + V L + G ++++ + W + + Sbjct: 230 LSPYLALGCLGMREVVQATQLRQVQLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLES 289 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + E+ + A + G TG+PI+DA + L GW++ R+R + Sbjct: 290 EPELEWRNLHRGYDGLREYAWNPAHFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAML 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 S L + WR + Q LD + + Q G + R++NP Q + Sbjct: 350 VSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQD 407 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471 DP G F+R WLP L VP ++ P + + P+VD A Sbjct: 408 HDPHGVFVRRWLPALRRVPDAWLFEPWRMAPDVQARCGVRVGQDIAAPLVDLASATKAAK 467 Query: 472 NQYYAAKKQ 480 + +A + Q Sbjct: 468 ARIHALRNQ 476 >gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio] gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio] Length = 556 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 191/498 (38%), Gaps = 32/498 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN +L + + + V V+I P + + F+ L Sbjct: 1 MVVNTVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + + + + + +L Y E RD ++K Sbjct: 60 EDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + S L + T R + + ++A + + Sbjct: 116 LANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVM 175 Query: 186 GPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 GP T ++P GE AL L + + K + + Sbjct: 176 GPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R + LSPYL G LS R + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+K+ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHC 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462 + P G+R DP G +IR +LP L P +YI+ P + + K + ++YP+P+V Sbjct: 413 YCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVH 472 Query: 463 HKKACHHTLNQYYAAKKQ 480 H +A + + +Q Sbjct: 473 HAEASRLNIERMKQIYQQ 490 >gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 477 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 165/486 (33%), Positives = 229/486 (47%), Gaps = 24/486 (4%) Query: 7 MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHF 60 M+ L W R DLR+TDN L AA S A V V++ P+ ++ + F Sbjct: 1 MTTPRVLFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+++Q+ G + D ++ L + + +NR E RD Sbjct: 60 LIESLIELQQRWRDAGSRLLVVE----GDPVQLLPQLAERIAAEAVVWNRDVEPYARERD 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPV 179 + + +RLQ D LL +L Y+VY PF + + ++P Sbjct: 116 RQVAQRLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPA 175 Query: 180 PA--IRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQ 233 PA + L PS P GE A+ L FC ++ Y Sbjct: 176 PAGLVDLDPAAVPSGEPLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEPD 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292 R+ P + GTS LS LS+G LSPRQ W+ +E + + W EL WREFY+ Sbjct: 236 RNFPGVVGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQ 295 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + G P+ + W + W++G TG PIIDAAMRQLN GWMHNR Sbjct: 296 QALFHFPELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNR 354 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 355 CRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 413 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 Q +FD G +IR W+PEL +V T+ + S +YP P+V+HK Sbjct: 414 TQASKFDAAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVNHKTQQAKFKA 470 Query: 473 QYYAAK 478 Y + Sbjct: 471 LYATIR 476 >gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1] gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247] gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH] gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU] gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399] gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4] Length = 486 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 148/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 59 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 293 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 294 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV + Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 472 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 473 AARRRALDAFGAIR 486 >gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster] Length = 540 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 198/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + + V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 66 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + P + FP GE AL + + K++++ Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori] gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori] gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori] Length = 536 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 101/499 (20%), Positives = 178/499 (35%), Gaps = 34/499 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A + +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K + G + + + KL + + E RD+ ++ + Sbjct: 65 KQFKKYGGRLLLVK----GKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACRE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + C+ L P +++ + + + + + Sbjct: 121 IGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVDNAKLRGIKFGT 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC---------------------KEKV 227 P F + +P I + Sbjct: 181 LPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCRG 240 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + LSP L G LS R+ + L++ F + +LIW Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCSTQYITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE++ + P + + + L+ W G TGFP +DAAMRQL G Sbjct: 301 REYFYTMSVNNPHYGQMTDNPICLDIPWKSPEGDELERWASGRTGFPFVDAAMRQLRLEG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405 W+H+ +R ASFL + L + W G +F+ LLD D + G W W +S+ ++ + Sbjct: 361 WLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 P G+R DP G ++R ++PEL VPT+YI+ P + +YP P Sbjct: 421 GECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERANCIIGKDYPAP 480 Query: 460 IVDHKKACHHTLNQYYAAK 478 +V+H A N K Sbjct: 481 VVNHIVAAQRNRNAMEDTK 499 >gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM 11571] Length = 475 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 214/468 (45%), Gaps = 20/468 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQK 70 DLRI DN L +A +S++ VI F A + + F+ SL + Sbjct: 11 HIFTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRLAFLSESLSDLSG 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++++KG +++ +++ + C R + L + Sbjct: 70 AIAEKGGEIRFYDEG----ALKLAEKLCRTGVEAVYMTRDYTPYAIKRENSLKKTCNDAG 125 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLPVPAIRLTGPVT 189 ++L P + + YKV+TPF A + + + + + + Sbjct: 126 CSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEPETCTFQNFSREELFDGA 185 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +IP +A + F G L +L ++ Y ++RD PA TS LS +L Sbjct: 186 SHDIPFGKSGTEEAKNRAFSGGRSEGLRLL--GETGRLKNYEDERDFPAKACTSMLSAHL 243 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R+ R+ + + +L WR+F+ H+ YP V PF Sbjct: 244 RFGTVSVREICRRISD--------TLGPGHGLIRQLYWRDFFTHIAYHYPHV-FKGPFQK 294 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + W L W +G TGFPIIDA MR+LN G+MHNR R+ ASFLVKDL +DW Sbjct: 295 RFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNRERLAAASFLVKDLHIDW 354 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP +Q K+FDP +IR W+ Sbjct: 355 RSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPWLQQKKFDPDCIYIRRWV 414 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 PEL+++ + IH + YP PIVDHK Y A Sbjct: 415 PELSDLEPKEIHNLDK--TGSVPPAGYPNPIVDHKNEARAAKIIYSGA 460 >gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 537 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 105/489 (21%), Positives = 183/489 (37%), Gaps = 29/489 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+++G + E L+S +L+ + + + Sbjct: 107 RARLAKRGQPLIVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVR--- 159 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +P ++ + ++ ++ + LV PV ++ P Sbjct: 160 -DWARAHEVPFTEVPSRGVVRGPHDRDEWADRWKASMDRPLVHPPDALQPVDSV---APG 215 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P A E + + + Y R PA S++S + Sbjct: 216 PMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTECSRISVH 275 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S R+ L+ +L A + L + H + + P I Sbjct: 276 LAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLEDAPRI 335 Query: 309 PWTEKIEWN-------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 I D L AW G TGFP++DA MR L GW++ R+R + SF Sbjct: 336 ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFA 395 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 D +DWR + + D + Q +G + RI+NP QGK DP Sbjct: 396 AYDCWLDWRRFAPTYGGLMADYVPGIHYP--QVQMQSGTTGINRVRIYNPVKQGKEQDPD 453 Query: 422 GTFIRHWLPELNNVP-TQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 GTFIR W+PEL+++ T Y+HAP + +YP +VDH A HH + Sbjct: 454 GTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHHAQDAI 513 Query: 475 YAAKKQSLL 483 + +++ + Sbjct: 514 HELRQRPEI 522 >gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 485 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 123/484 (25%), Positives = 213/484 (44%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 L+W RNDLR+ D++A+Y A ++I + Q+ ++ F+ S+ Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQE-QLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+SL G + E + + ++ +++Y+++ E+ +K + K Sbjct: 63 ANLQQSLEGLGGNLIIRR----GKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNK 118 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + L L + + I+ + + Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKL 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD-I 236 + N+P D + F GE ++++ + Y E R+ + Sbjct: 179 PKIDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNEM 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+ S +LS+G LSPR + +++ + + + EL+WR+F+R + + Sbjct: 239 LGTNYSSKFSAWLSLGCLSPRYIYEEVQKY--EQTRVKNDSTYWLIFELLWRDFFRFICS 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + K + W +D W +G TG+P++DA MR+L G+M NR R Sbjct: 297 KHGNKIFYKSGLQELNL-PWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQN 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFL K+L +DWR+G E+F S L+D D+ SN G W + A GND+ FR FN Q K Sbjct: 356 VASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQSK 414 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470 +DP+G ++RHWLPEL + IH P+ + L +NYP PIVD ++ H Sbjct: 415 DYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPRPIVDFFQSIKHN 474 Query: 471 LNQY 474 Y Sbjct: 475 EKIY 478 >gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana] Length = 543 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 119/496 (23%), Positives = 194/496 (39%), Gaps = 33/496 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQ 67 + W R LR+ DN AL AA + V V+I P S + F+ SL Sbjct: 8 SVHWFRKGLRLHDNPALLAALRGA-RCVRCVYILDPWFAASSSSSGGVNRWRFLLQSLED 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + G + + + VT+L + E RD + K Sbjct: 67 LDSSLRKLGSRLFVGR----GQPADVFPRLFKEWGVTRLTFQYYSEPFGKERDAAIMKLA 122 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S I+ + +A++ + + ++ Sbjct: 123 KEAGVEVIVESSHTLYDLDKIIELNGNSPPLTYKRFQAIVSRMELPRRPVPSITRQQMEK 182 Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235 Y +++ ++P GE AL L + + K + +R Sbjct: 183 CRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHLERKAWVAHYERP 242 Query: 236 IPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + LSPYL G LS R + RL+E + + S +L+WREF+ Sbjct: 243 RMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKVKKNSPPPL-SLFGQLLWREFF 301 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 302 YTAATNNPKFDQME-GNPICVQIPWDKNPEALAKWTEGKTGFPWIDAIMTQLRQEGWIHH 360 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + DL W G + F LLD D + N G W W + + +F + Sbjct: 361 LARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYC 419 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHK 464 P G+R DP G ++R +LP L P++YI+ P + + K + ++YP P+V+H Sbjct: 420 PVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEAKCIVGVDYPKPVVNHA 479 Query: 465 KACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 480 EASRLNIERMKQTYQQ 495 >gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836] Length = 437 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 140/468 (29%), Positives = 211/468 (45%), Gaps = 34/468 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DN AL A D +V VF+ P W G R++ L ++ Sbjct: 3 AVMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAG-DPRRA----QLLSSLR 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + D + + + Y VRRD+ +E L Sbjct: 58 SLSAAMDGKLVVRR----GDPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALS- 112 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + PG ILN + Y+V+TP+ +A +++ + + Sbjct: 113 -CPLVATGSPYAVAPGRILNGQGRSYQVFTPYFRAWLEHGWRQPAEAPATIEWIAARGDA 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 A + V Y ++R+ P + TS++S L Sbjct: 172 LPAAGTIEGAGEVAAREHW------------TQWLASVGQYDDERNRPDLDSTSRMSVPL 219 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G + PR L GA ++ EL WR+F L+A YP KP P Sbjct: 220 KYGEIHPRTMLTDLARHPGA-------GADAYRRELAWRDFCADLLARYPQAA-WKPLRP 271 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E++ +++ AW +G TG+PI+DA MRQL G++HNR+RM+ ASFLVKDL V W Sbjct: 272 EFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDLHVHW 331 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + G +FM++L DGDLASN+ WQW A G D PY+R+FNP QG +FDP G+++R W+ Sbjct: 332 KYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYVRRWV 391 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 PEL ++P + +H P PIVDH +A +L +Y A Sbjct: 392 PELADLPGKSVHEPWKLAAPPAGYP---APIVDHAEARLESLRRYDAI 436 >gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens subsp. patens] Length = 526 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 127/510 (24%), Positives = 196/510 (38%), Gaps = 46/510 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHF 60 L+W R LR+ DN AL +C + + V VF+ P + + F Sbjct: 5 SLMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRF 63 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + ++L + G + + ++ ++ +L + E RD Sbjct: 64 LLQSLEDLDENLRKHGSRLLVLH----GNPTTVIPELLMKWQINELCFEFDTEPYAQDRD 119 Query: 121 KLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++K + S P +I + Q Y F K + + Sbjct: 120 ADIKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPLQI 179 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHI-----LRKFCKEKVYYY 230 V +P+ D + +D P GE AL + + Sbjct: 180 PSPPEDLNDVHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCDFEKP 239 Query: 231 VEQRDIPAIQGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 T+ LSPYL G LS R RL + Sbjct: 240 KGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQNKKHSSPPV 299 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S +L+WREF+ P+ P ++I W D LL AW+ G TG+P IDA Sbjct: 300 -SLEGQLLWREFFYTAGYGTPNFDRM-LGNPICKQIPWKDDDRLLAAWRDGQTGYPWIDA 357 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AM QL GWMH+ R A FL + D+ V W G + F L+D D A NNG W W ++ Sbjct: 358 AMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLWLSA 417 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451 + Y RI++P GK++DP G +++H+LP L ++P YI+ P + Sbjct: 418 SAFFHQ-YHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANCI 476 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + ++YP PIVDH A + A Q+ Sbjct: 477 IGVDYPRPIVDHSIANKECREKMGIAYSQN 506 >gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 488 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 187/482 (38%), Gaps = 28/482 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S+++VWL+ DLR+TD++ L A D VI +++ P S R F+ SL+ Sbjct: 3 SINIVWLKRDLRLTDHQPLQHALEQ-DLPVILLYVFEPLLLNDPHYSERHWRFVSHSLVD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+ G + + + + + ++ +++ ++ + Sbjct: 62 MNQQLAPYGGKVSILR----GEILSCFKAIQSLYSIANIYSHQEIGLSCTYQRDKQVA-- 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + +P A+ +++A + L + A LT Sbjct: 116 -------HWTQAHNIPWIESPQGAVIRGAKNRKEWDKHWDRIMRAPIAHLDLNANWLTLE 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQL 245 + + G A L F + + Y P+ ++L Sbjct: 169 HLKDYTLTLPKHWLKKAKGQQTGGTTLAWKTLDDFFQRRGKEYYRSISSPSASRYACTRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + +L + + + + L W + ++ Sbjct: 229 SPYLAWGNISLRELYQQLLGHWQVKG--FRRSLVALSSRLHWHCHFIQKFESESAMEYRC 286 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + D L AWKQG TG P+IDA MR L+ G+++ R+R + SFL Sbjct: 287 VNQAYDALLSQSCLSDRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 346 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G RI+NPT Q + D +G Sbjct: 347 HMNMDWREGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGV 404 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ WLPEL +VPT + P + + +L Y PI+D ++ ++ Sbjct: 405 FIKQWLPELKHVPTPLLFEPWKMTQMEAVMYQIELDSCYLSPIIDLATRAKEARDRLWSW 464 Query: 478 KK 479 +K Sbjct: 465 RK 466 >gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035] Length = 473 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 147/476 (30%), Positives = 215/476 (45%), Gaps = 21/476 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VWLR DLR+ D+ AL AA VI VFI + A + SL + Sbjct: 7 SIVWLRRDLRLADHPALCAAL-AGGGAVIPVFIHDESVEA---LGAAPKWRLGLSLASLA 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ G + +++ L + + + ++R Y+ + RDK ++ L+ Sbjct: 63 RDLAACGSRLILRR----GAALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVKSALRE 118 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRL 184 + +S V+ P ++ Y+VY+P +A+ + A + Sbjct: 119 AGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAPKVWPA 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + P +GE A+ L F + Y + R+ PA+ TS Sbjct: 179 SDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNFPAVDATSA 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L+ G +SPRQCW+ + GA +WL EL+WREF HLM P + G Sbjct: 239 LSENLTYGEISPRQCWHAGQRALHGGAK----GAETWLKELVWREFAYHLMYHTPHILSG 294 Query: 305 KPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 W + D + AWKQG TG P +DAAMR++ G MHNR RMI AS+L K Sbjct: 295 NWRTDWDAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTK 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ W+IG ++F L D D ASN GWQWAA G D+ PYFR+FNP Q +FD G Sbjct: 355 HLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLDKFDRGGA 414 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYA 476 + R W+ E P + + D S+ YP IVD + LN Y A Sbjct: 415 YTRRWIAEGQRTPPATALDYFKAVPRAWQLDPSMLYPGRIVDLSQGRQRALNAYEA 470 >gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis BCW-1] Length = 466 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 124/476 (26%), Positives = 196/476 (41%), Gaps = 21/476 (4%) Query: 7 MSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M V + DLR+ DN AL A +++ V+ +F+ + ++ F+ Sbjct: 1 MPVRVSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADC 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-----CLQQRVTKLFYNRQYEINEVRR 119 L + +L +G + ++ + + R+ + Sbjct: 60 LADLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALA 119 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-P 178 + E R+ + ++ S K + + R+ P Sbjct: 120 RERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLP 179 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIP 237 P + + + +P A P G + A + +R D Sbjct: 180 APRVVRVPSIRSAALPTAASLAPGAASLDLPAGGETAARRRLRRWAAGPLADYAERQDDL 239 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A TS+LSPYL G LSP + R + GA +++ +L WR+F+ ++A Sbjct: 240 AGDATSRLSPYLHFGCLSPVEVARRALDAGG-------PGAEAFVRQLAWRDFHLQVLAA 292 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P W +D+ + AW G TG P++DAAMRQL GWM R R++ Sbjct: 293 RPDAAHRDY---RPRHDRWRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRARLLA 349 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K L +DWR G +F++ L+DGD+A+N WQWAA TG D+ P RI NP IQ R Sbjct: 350 ASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLIQALR 408 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 DP+G ++R W+PEL V +H P + +L YP PIVD +A + Sbjct: 409 HDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAADRFRRR 464 >gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM 13855] Length = 537 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 105/489 (21%), Positives = 182/489 (37%), Gaps = 29/489 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +VW + DLR+ D++ L A V+ +++A P R I +L+++ Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+++G + E L+S +L+ + + + Sbjct: 107 RARLAKRGQPLVVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVR--- 159 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +P ++ + + ++ + LV PV ++ P Sbjct: 160 -DWARAHEVPFTEVPSRGVVRGPHDRDEWADQWEASMDRPLVHPPDALQPVDSV---APG 215 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + P A E + + + Y R PA S++S + Sbjct: 216 PMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTECSRISVH 275 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S R+ L+ +L A + L + H + + P I Sbjct: 276 LAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLEDAPRI 335 Query: 309 PWTEKIEWN-------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 I D L AW G TGFP++DA MR L GW++ R+R + SF Sbjct: 336 ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFA 395 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 D +DWR + + D + Q +G + RI+NP QGK DP Sbjct: 396 AYDCWLDWRRFAPTYGGLMADYVPGIHYP--QVQMQSGTTGINRVRIYNPVKQGKEQDPD 453 Query: 422 GTFIRHWLPELNNVP-TQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 GTFIR W+PEL+++ T Y+HAP + +YP +VDH A HH + Sbjct: 454 GTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHHAQDAI 513 Query: 475 YAAKKQSLL 483 + +++ + Sbjct: 514 HELRQRPEI 522 >gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207] gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207] Length = 445 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 199/451 (44%), Gaps = 20/451 (4%) Query: 41 FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 +I + + +++ +L + KSL K +F D++ L Sbjct: 2 YIFDQSNTQDWTLGGASRWWLHHALQSLDKSLDGKLNIF-------SGDALAILSELSAS 54 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYT 159 +++NR YE + RD ++ RL+ + + L P +L YKV+T Sbjct: 55 MSAKAVYWNRCYEPQSIERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFT 114 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---- 215 P+ + V + L + P D + Sbjct: 115 PYYRRGCLQKVAPRQPLPVPKTLDLVKADNSLTVEDLSLLPAIDWDKKLHGDWDISEDGA 174 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L F + Y E R+ P + S+LSPY G +S LI + Sbjct: 175 KDRLDDFVFNGIQDYREGRNFPNKKNVSRLSPYFHFGQMSVNT--AWYAANDAAALIDNE 232 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S ++L+EL WREF +L+ +P + + L+AW++G TG+P+ Sbjct: 233 SNLDTFLSELGWREFSYYLLYHFPKLPTDNLQQRFNVFPWAKNTDAELKAWQKGKTGYPL 292 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L G+MHNR+RM+ SF+VK+LL+ W GE +F L+D DLA+N+ WQW Sbjct: 293 VDAGMRELYGTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWI 352 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ 449 A G D+ P+FRIFNP Q ++FD QG +IR +PEL +P +YIHAP Sbjct: 353 AGCGADAAPFFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAAG 412 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++ +YP PI+D K++ L + K Sbjct: 413 VEIGTDYPAPIIDIKESRERALAAFKMTKND 443 >gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator] Length = 558 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 57 VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 115 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 116 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 171 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + ++ ++ + L V + + T Sbjct: 172 GISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIGSAYT 231 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 232 PLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 291 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 292 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAM--PPLSLHGQLLWREFFYCA 349 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 350 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 408 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 409 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 467 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + Y LP+V+H K+ Sbjct: 468 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIVGKEYSLPMVNHSKSS 527 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 528 RINIERMKQVYQQ 540 >gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp. TrichCH4B] Length = 474 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 231/481 (48%), Gaps = 24/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR+ DN AL AA +I ++I P + + A + L + K Sbjct: 8 IWWIRRDLRLRDNPALTAALETG-GPIIPLYIHDP---QDEALGAAPKFRLGLGLERFAK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + D++E L + + ++R Y+ ++RD ++++L+ Sbjct: 64 TLEGHGSRLTLRK----GDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAA 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I KS ++ P ++ MYKVYTPF KA+ L+ A A T Sbjct: 120 DITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWPAT 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + NI + + +G+ AL L +F +E+V Y RD P+ TS+L Sbjct: 180 DELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATSEL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SP + W+ + D GA +L E++WREF HLM P + Sbjct: 240 SENLAWGEISPHRMWHLGAQAMRDGK----QGAEHFLKEVVWREFAYHLMYHSPHILTRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + L W+QG TG+ +DAAMR+L G MHNR RMI ASFL K L Sbjct: 296 WREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G ++ Sbjct: 356 MIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGRYV 415 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R+WL E + P Q + P SW + PI+D K+ L Y+ ++ + Sbjct: 416 RNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRA--RPIIDLKRGRERALEAYHDSRDK 473 Query: 481 S 481 S Sbjct: 474 S 474 >gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + + V +FI P + A + F+ Sbjct: 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 89 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + P + FP GE AL + + K++++ Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+HN R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 383 EGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522 >gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma proteobacterium HTCC2148] Length = 495 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 182/481 (37%), Gaps = 18/481 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MSV +VWL+ DLR+ D++ L A +S V + P S R F+ SL Sbjct: 1 MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L Q Q D++ + ++ ++ + + ++ Sbjct: 60 DMNRQLRQNRFRVLVFQS----DALPLFKLIHAESPISAVYSHEETGVDSTFGRDRSIAS 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + + Q + A + P G Sbjct: 116 WLNNEGIAWHESPTNGVQRGRTDRKGWNRRWSEVMKMPQDQPVWDA----VCAPPPLAGG 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244 + + + + + + + GE A +L F E+ +Y P S+ Sbjct: 172 ALGEALLRSPPEQWLRPVQDLQQGGETAATQVLDSFLTERGAHYERHISKPDKSQLHCSR 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G +S RQ L+ + ++ + L W + S+ Sbjct: 232 LSPHLAWGNISIRQVSQALEARRPYAG--WERSMNAFESRLHWHCHFIQKFEMECSME-W 288 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +E + D AW++G TG+P+IDAAMR L G+++ R R + SF Sbjct: 289 RDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRCRAMLVSFFCHL 348 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L W + S LD + + Q A G + RI+NP Q DP+G F Sbjct: 349 LWQPWHDAAVHLASLFLDFEPGIHYPQLQMQA--GVTGINTVRIYNPIKQAIDHDPKGHF 406 Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 IR W+PEL +P IH P + +++ LS +YP PI+D + + + + Sbjct: 407 IRQWVPELRTMPEHLIHQPWNANPMERMLLSCDYPEPIIDCTSSYRRAREILWDLQHSNT 466 Query: 483 L 483 + Sbjct: 467 V 467 >gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus 12G01] Length = 493 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 107/486 (22%), Positives = 193/486 (39%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD++ L A V+ ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L G FDD++ S Q ++ +F +R+ +N Sbjct: 62 MDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAA- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + D G+++ A+ + + ++ +L++ + ++ Sbjct: 117 ---WLYEQNIDWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQTDLLHSLDAEAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 + P + + M G + A L F + Y P T+ L Sbjct: 174 GCSFSPPSSWLSKCKG---MQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREVYQYLLKHWQVAG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYC 288 Query: 306 PFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + I+ D L AWK G+TG P+IDA MR L+ G+++ R+R + SFL Sbjct: 289 VNRAYEPLIKQSSTFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR+G + LD + + +Q A G RI+NP Q + DP GT Sbjct: 349 HMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPIKQAQEHDPNGT 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + Y PI+ KA + + Sbjct: 407 FIYKWVPELQMVPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDKAAKAARERLWTW 466 Query: 478 KKQSLL 483 +K++ + Sbjct: 467 RKRADV 472 >gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)] Length = 458 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 218/476 (45%), Gaps = 25/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V DLR+ D+ L AA SDA V+ +F+ + + + L Sbjct: 1 MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVDAAGFAAPNRLALLADCLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L +G D +E + + + ++ + RR++LL Sbjct: 60 DLDSGLRDRGGRLVVRS----GDLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115 Query: 127 LQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + +L PGS+ + + V+TP+ + + V+ L R+ Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPL----AAPRRV 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P + P + P P GE++A L + + + Y + D A TS Sbjct: 172 RVPDGVGSEPLPARGDLTGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDATS 231 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP L +G LSP + +R + GA +++ +L WR+F+ ++A P Sbjct: 232 RLSPDLHLGALSPVELVHRARRAGG-------PGAEAFVRQLAWRDFHHQVLAARPHASA 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 AW+ G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L VDWR+G +F+ L+DGD+A+N WQWAA TG D+ P+ R+ NPT Q +RFDP GT Sbjct: 345 TLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRFDPGGT 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W+PEL + + +H P YP PIVD + L+++ A+ Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRAR 455 >gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio] Length = 579 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 201/498 (40%), Gaps = 29/498 (5%) Query: 2 KATTAMSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59 + + AMS + R LR+ DN +L A +S + + V++ + + A + Sbjct: 17 RKSIAMSHRTIHLFRKGLRLHDNPSLLGALASS-STLYPVYVLDRVFLQGAMHMGALRWR 75 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + L G + L Q +T++ Y+ + E R Sbjct: 76 FLLQSLEDLDTRLRAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRM 131 Query: 120 DKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 DK ++ Q + S I+ + ++ L + + + Sbjct: 132 DKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARD 191 Query: 179 VPAIRLTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKV 227 V VTP ++ R + P + ++P GE +A + Sbjct: 192 VSIEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVAN 251 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + + T+ LSPYLS+G LS R ++RL + S +++W Sbjct: 252 FSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPV-SLQGQVLW 310 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ + + P+ + +I+W D L+ W+ TGFP IDA M QL G Sbjct: 311 REFFYTVASATPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEG 369 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G + F LLD D + N G W W +++ Y Sbjct: 370 WIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YT 428 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 RIF P G+R DPQG ++R +LP L N P+QYI+ P + + +YP PI Sbjct: 429 RIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPI 488 Query: 461 VDHKKACHHTLNQYYAAK 478 V H +A L + Sbjct: 489 VSHIEASQRNLALMRQVR 506 >gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC 27064] Length = 453 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 132/461 (28%), Positives = 209/461 (45%), Gaps = 22/461 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++ +DLR+ D AL AA +D +V+ +F+ R + + F+ SL Sbjct: 1 MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L ++G D E + + + RR+ L Sbjct: 60 ALDEELRERGGRLVLRT----GDVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115 Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + ++PPG++ + V+TP+ + + A R L P L Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRWAE---VAPRRVLAAP-RSL 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T P P + + GE+ LR++ + Y E D TS+ Sbjct: 172 TVPELPGHPLPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPGDATSR 231 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G LS + R + + GA +++ +L WR+F+ ++A P Sbjct: 232 LSPHLHFGTLSAAELVQRAR-------GRGGPGAQAFVRQLAWRDFHHQVLAARPDAAHA 284 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W D + AWK+G TG P++DA MRQL GWMHNR R++TAS+L K Sbjct: 285 DY---RPRGDRWRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYLTKT 341 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWR+G +F+ L+DGD+A N WQW A TG D+ P R+ +P Q +RFDP G + Sbjct: 342 LYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPHGAY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 +R W+PEL ++ + IH+P + L YP P++D + Sbjct: 401 VRRWVPELADLGDREIHSPETLDPARRARLGYPDPLIDPAE 441 >gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis ATCC 700755] Length = 457 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 145/482 (30%), Positives = 212/482 (43%), Gaps = 45/482 (9%) Query: 2 KATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 K M V + W R D+R+ DN LY A + V+ +FI + + Sbjct: 18 KKQFKMKNKVRVFWFRRDMRLEDNVGLYHAL-SGVFSVVPLFIFDKNILNELQEDDARIS 76 Query: 60 FIYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 FI+ L +++ L G + + E V ++ NR YE + Sbjct: 77 FIFEQLQKMRSHLQDHYGSSIATYHST----PEEAFHELLKDFEVEAVYTNRDYEPYAHQ 132 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 RD + L ++ I ++ + + + + + Sbjct: 133 RDSKINTLLANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTF 192 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L S +P + + K+ + +Y + R+IP+ Sbjct: 193 PSEDHLDNTYKNSMLPDVSLSDMGFVKSSIQV-------PDYNITKDLLEHYEDTRNIPS 245 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 I+GTS+LSPYL G++ R+ + ++LNELIWREFY+ ++ + Sbjct: 246 IEGTSRLSPYLRFGLIGYRKLIQAALSVKNE----------TFLNELIWREFYKAILYNH 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P F P ++IEW D + + WK+G TG+PI+DA MRQLN GWMHNRLRM+ Sbjct: 296 P-KTQNSAFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVG 354 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DWR GE YF +LLD +++SN GGWQW A +G D+ PYFRIFNP Q RF Sbjct: 355 SFLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRF 414 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D +I W+PELN + YP P+VDHK A L Y A Sbjct: 415 DKDKKYIMKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAV 455 Query: 479 KQ 480 K Sbjct: 456 KS 457 >gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 477 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 221/480 (46%), Gaps = 22/480 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66 L W R DLR+ DN + AA S A V V++ P ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFLLESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G + D ++ L + + +NR E RD+ + KR Sbjct: 66 ELQQRWRAAGSRLLILE----GDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDRQVAKR 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181 LQ D LL +L A Y+VY PF + + ++ P+ Sbjct: 122 LQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAPSGLVD 181 Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L P R GE AL L F + Y R+ P + Sbjct: 182 LDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAALEQLTCFADGALSAYEPDRNFPNV 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 GTS LS LS+G LSPRQ W ++ + ++ W EL WREFY+ + + Sbjct: 242 VGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHF 301 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + G P+ + W + +W+ G TG PIIDAAMRQLN GWMHNR RMI A Sbjct: 302 PELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNRCRMIVA 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D P RIFNP Q +F Sbjct: 361 SFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKF 419 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 D G +IR WLPEL +V T+ + + YP P+++HK + Y + Sbjct: 420 DADGDYIRRWLPELRHVNTKDL---LTGEIGGLERRGYPEPLINHKNQQALFKSLYATIR 476 >gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily [Polaribacter sp. MED152] Length = 496 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 97/483 (20%), Positives = 190/483 (39%), Gaps = 25/483 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR+ DN+A+ A V+ +++ + R +FI S+ ++ Sbjct: 8 INVVWFKRDLRLQDNEAIQNALLT-KKPVLFLYVFENSLLEDPHYNIRHWNFIKESIQEL 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L+ + + I + ++ +F +++ + + Sbjct: 67 NDDLTAFNTKIL----TVTSEVITVFNQLQNFYKIDTVFSHQETGLLKTYNRDKDF---- 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + + V +L L + + + + ++ D ++ + + + Sbjct: 119 ARYCRNNSINWVENNNNGVLRGLLNRHDWLEKWENFMYKPQIKNDFKNRNLISEDEITTI 178 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246 I + P + G + F +E+ Y+ P + + S+LS Sbjct: 179 ENHFIVTDLETPKE--AKFQKGGSKMGWRYANSFFEERYKNYMNHISKPALSRKSCSRLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++ G LS RQ + + D + +++ L W+ + Sbjct: 237 PYIAWGNLSIRQVYQKAIMLKNDENKRQLGA---FVSRLRWQAHFIQKFE-MEHTMEEAS 292 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 K++ N + +AW++G TGFPIIDA+MR L+ G+++ R+R + ASF L Sbjct: 293 INKGYHKLKKNISTKYQKAWREGKTGFPIIDASMRCLSETGYLNFRMRSMLASFFTHILW 352 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ + LD + + Q +G + R++NP D FI+ Sbjct: 353 QPWQDSSHHLSQLFLDFEPGIHFP--QLNMQSGETGINEIRVYNPIKNSLEHDEDANFIK 410 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL N+PT +IH P+ ++ L ++YP PIVD K A + KK Sbjct: 411 EWVPELANLPTAFIHQPYLMTPLDEQFNNFKLGVDYPKPIVDFKSARKRATQTLWDMKKD 470 Query: 481 SLL 483 + Sbjct: 471 PDV 473 >gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST] gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST] Length = 556 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 118/501 (23%), Positives = 195/501 (38%), Gaps = 38/501 (7%) Query: 11 LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LRI DN AL A + + +F+ P + + + F+ +L Sbjct: 8 VHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQTL 67 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + ++L + + +E V+ L Y E V+RD +E+ Sbjct: 68 ANLDENLRSINSRLYVVR----GNPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEE 123 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--- 182 + + + + S + + T R A + + + + Sbjct: 124 QARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKLPAK 183 Query: 183 -----------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE----QNALHILRKFCKEKV 227 + P + FP GE + IL + Sbjct: 184 ETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAWVCK 243 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + T+ LSPYL G LS R ++R+ E K S + +++W Sbjct: 244 FEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETI--KGQKHSQPPVSLIGQVMW 301 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REFY + A P+ +I+W+ + L+AW G TG+P IDA MRQL G Sbjct: 302 REFYYCVAAATPNYDKM-VGNGICTQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQLRQEG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G+ F LLD D A N G W W +++ YF Sbjct: 361 WIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQ-YF 419 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 R+++P GK+ DP+G FI+ ++PEL P I+ P + + +YP+ I Sbjct: 420 RVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKDYPMRI 479 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V H+ + + AA K++ Sbjct: 480 VVHEDISKVNIQRMSAAYKRN 500 >gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 145/463 (31%), Positives = 216/463 (46%), Gaps = 33/463 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R D RI DN AL A + + I H A +++ ++ + + Sbjct: 10 IVWFREDFRIADNMALLEA-EKRGQPTLCIVILD----DAHLPGAAARWWLHGAIRSLDE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + + L + +F+NR+Y+ D ++ L+ R Sbjct: 65 TLRGMGGALHVFR----GAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +SF ++L P S+ + YK++T F +A P + P Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPM 180 Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P ++ + M+ GE+ A L F + Y RD P + Sbjct: 181 PDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +SP Q W+ + +L EL WR+F L+ F P Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKA---------CPDKFLMELGWRDFAWSLLFFNPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P + + W D L AW++G TG+P++DA MR+L GWMHNR+RM+ ASF Sbjct: 292 LATRN-LRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q ++FDP Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 G +IR W+PEL ++ IHAP ++ + YP PIVDH Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449 >gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter denitrificans OCh 114] Length = 472 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 156/482 (32%), Positives = 228/482 (47%), Gaps = 27/482 (5%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS LVW R DLR++D+ AL AA + + VI VFI + + A + Sbjct: 1 MSTSPVLVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHDDQV---ETLGAAPRWRLGLG 56 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + ++L + ++E L + L+ +F++R Y+ V RD ++ Sbjct: 57 IGHLSETLEGLNSRLILRRGP----ALETLRTLILETGAGAVFWSRLYDPAAVERDTEVK 112 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPV 179 L+ I +SF ++ P ++ YKVYTPF + V A R Sbjct: 113 AALKQDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAP 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + ++ N+ D + P +GE A L F + V Y RD PAI Sbjct: 173 AAWPGSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAI 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LS L++G +SP QCW + GA ++L EL+WREF HLM P Sbjct: 233 DGTSGLSENLALGEISPHQCWYAGLRAREEEK----PGAETFLKELVWREFAYHLMHHTP 288 Query: 300 SVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + G W ++ + ++ W+QG TG +DAAMR++ G MHNR RMI A Sbjct: 289 RILTGNWKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K LL DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +F Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D +++ W+ E PTQ Y A P +W D +YP P+V + L Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466 Query: 474 YY 475 Y Sbjct: 467 YE 468 >gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c] Length = 447 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 129/449 (28%), Positives = 193/449 (42%), Gaps = 22/449 (4%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 DLR+ DN L AA + V +F+ R + + F+ SL + +SL Sbjct: 7 FTRDLRVHDNPMLTAAALAGEHTV-PLFVLDAAMARSGFATGARERFLAESLADLDRSLR 65 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 + G D +E + + + RR+ L L R Sbjct: 66 ELGGRLVVR----AGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAERGRT 121 Query: 134 KSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 D V++ PG + Y V+ + + + P +RL + Sbjct: 122 LHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRR--VIAPPARLRLPAVDPGA 179 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P ++ F GE ++ +E V Y E+RD A TS+LSPYL + Sbjct: 180 LPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADATSRLSPYLHL 239 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G LS + A ++ +L WR+F+ L+A P+ Sbjct: 240 GCLSALEL---------ATQAGTGDAARDFVRQLAWRDFFHQLLAARPAAAHEDYRDAHR 290 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + AW+ G+TG PI+DA MRQL T GW+ NR RMITASFL K L +DWR Sbjct: 291 TWRDDPAALD---AWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASFLTKTLGLDWRA 347 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 G ++ LLD D+A+N+ WQW A TG D+ P R+ NP Q +RFDP G ++R +PE Sbjct: 348 GAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDPDGVYVRRHVPE 406 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 L +P + +H P D+ +L+YP P+ Sbjct: 407 LAGLPGRQVHRPWRLPDRERAALDYPEPL 435 >gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21] Length = 464 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 216/478 (45%), Gaps = 24/478 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ D AL+AA VI V++ E+ H +++ SL Sbjct: 3 SPQIVWLRRDLRVADQPALHAAAQA--GPVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KS + + D+ + L + + R YE + L L Sbjct: 61 LCKSFGNRRSQIVLRK----GDAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +D + LLPPGS+ + YK+YTPF K++++ + D+ ++ P Sbjct: 117 EEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLG---EPETISSP 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY-------VEQRDIPAIQ 240 D+ P + G ++ E++ ++ E R++P+ Sbjct: 174 DNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLEWWADEVADYDEGRNLPSND 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +SP Q W+ LK++ D + + S Sbjct: 234 ITSRLSPHLHWGEISPAQVWHALKDKRSDG--WKTFAKEIIWRDYAQNVIDQFPNYPRES 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + L+ W++G TG+PI+DA MRQL GW+HNR+RMI ASF Sbjct: 292 YRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIHNRVRMICASF 351 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE+++ L+D D +N WQW + TG DS + RI P Q ++FD Sbjct: 352 LVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMAPLSQSEKFDA 411 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR ++PEL + IH P +D +YP+ ++ HK+A L Y A+K Sbjct: 412 -AAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERALEAYRASK 463 >gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium psychrophilum JIP02/86] Length = 502 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 189/491 (38%), Gaps = 27/491 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ V++VW + DLR TDN+AL+ A H+S ++ +++ P R F Sbjct: 1 MEKKV---VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRF 56 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +Y SLL +Q L + ++S V +F +++ Sbjct: 57 VYESLLDMQLKLDLVASKIYFFH----NESKIIFSELIKIFNVQTIFSHQEIGNKITFDR 112 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + ++ + + + + K +++ + Sbjct: 113 DIEMQAFFNKNNIIWKEFQLHGVIRKLKSRQNWDKKWED-----VMRASPRIIDLKDLKI 167 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238 I GE A L F K++ Y + P + Sbjct: 168 EILSDSFYQEFKGEILNPEITTHNKNFQQGGENFAWRYLDSFVKKRYVNYSKHISKPLLS 227 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +G S+LSPYL+ G +S R + + + K ++++ L W + Sbjct: 228 RKGCSRLSPYLTYGNISMRAIYQYTNQHYETSKNKR--AILNFVSRLHWHCHFMQKFEDE 285 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 ++ + + K+ ++AW++G TG PI+DA MR L T G+++ R+R + Sbjct: 286 CTMEFENA-NRAYDVLIKPKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFRMRAMVV 344 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF +L DWR + Q LD + + Q +G + RI+NP + Sbjct: 345 SFFTFNLWQDWREL-HFLARQFLDYEPGIHYPQIQ--MQSGTTGINTIRIYNPIKNSEEH 401 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472 DP+G FI+ WLPEL +P +H P D + +YP PIV+ + + + Sbjct: 402 DPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTPIVNIDQTRKYASD 461 Query: 473 QYYAAKKQSLL 483 ++ +K+ + Sbjct: 462 IVWSFRKKDEV 472 >gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp. 5_7_47FAA] Length = 516 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 88/490 (17%), Positives = 168/490 (34%), Gaps = 24/490 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+ D+ L A KV+ +++ P W Q +++ FI L Sbjct: 1 MSYTIVWFKRDLRVHDHAPLVHAARR--GKVLCLYVIEPSLWAQPDAASQHYLFIQECLH 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L G Q + E + L + + R Sbjct: 59 DLAEQLRACGARLQV----AVGEVTEVFGRLHAAAAFSHLVSHEETGNGHTFARDKAVAR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + + L + +P + Sbjct: 115 WCLDHDVTWREWPQHGVVRRLPTRDVWHDRWAEHMYAPCMPAPGVGALSDVMLPWPAMDW 174 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + P + + + F + + Y + A S+LS Sbjct: 175 PGCEALGLDTHAPPRRQRGGRA---RGSEVLRDFLFERSRNYRGGISSPLTAPSACSRLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFYP 299 PYL+ G L R+ ++ + L + G ++++ L W + + P Sbjct: 232 PYLAYGCLGMREVVQATEQRVLQLRASTDEDAVWQRKGLAAFVSRLHWHCHFIQKLESEP 291 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + E ++ A G TG+P++DA + L GW++ R+R + S Sbjct: 292 AIEFRNLHRGYDGLRESAWNADHFAALVAGRTGWPMVDACVAMLRETGWINFRMRAMLVS 351 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + WR + Q +D + + Q G + R++NP Q + D Sbjct: 352 VASYPLWLHWRPVGVWLARQFVDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQDQD 409 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473 P G F+R WLP L VP ++ P + + P+P+VD + A + Sbjct: 410 PHGRFVRRWLPALRRVPDAWLLQPWRMPPDVQARCGVRVGEDIPVPLVDLEAATRQAKMR 469 Query: 474 YYAAKKQSLL 483 +A + + + Sbjct: 470 VHALRARPEV 479 >gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 493 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 105/486 (21%), Positives = 186/486 (38%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD++ L A +S+ + ++I P SAR FI+ SL Sbjct: 3 TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++LS G +I+ L + Q + +F +++ ++ Sbjct: 62 MNETLSALGHQVSV----MSGSTIDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSA- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + G+++ A + + + DL S + A+ Sbjct: 117 ---WLQAHSIPWHEFEHGAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDAKAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 P + I M G A + F + + Y P T+ L Sbjct: 174 GCLFTPPPS---WLEKIKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTASRTACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREVYQYLLQHWQVAG--FRRSLIALSSRLHWHCHFMQKFESECEMEFRY 288 Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + ++ AWK G TG P+IDA MR L+ G+++ R+R + SFL Sbjct: 289 VNKAYDPLLQQASVRDAALLDAWKSGTTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G RI+NPT Q + D G Sbjct: 349 HMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDANGE 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VPT + P + Y P V+ + + + +A Sbjct: 407 FIHKWIPELAMVPTPLLFEPWKMTAMETVMYQLEPDSRYLAPFVNVEVSAKAARERLWAW 466 Query: 478 KKQSLL 483 +K++ + Sbjct: 467 RKRTEV 472 >gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + + V +FI P + A + F+ Sbjct: 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 89 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + P + FP GE AL + + K++++ Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ RM A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 383 EGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522 >gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. AS9601] Length = 498 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 101/477 (21%), Positives = 191/477 (40%), Gaps = 31/477 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ + Sbjct: 4 INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L++ G + I D+ + ++ ++ +++ + K Sbjct: 62 RNALAEIGQPLIIRT----GNVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWA 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L+ K K L++ ++ + + Sbjct: 118 FSKNIIWKEFLQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLRIN---------SINFNT 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 F + + G + L ++ F K+ Y + P ++LS Sbjct: 169 GEIPSDEIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTRLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY+ G +S ++ + I + + + L W + + P + + Sbjct: 229 PYICWGCISLKEIFQ-------KANISKNNNSRMLKSRLTWHCHFIQKLESEPELEFREY 281 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + E ++ LL +W G TGFP IDA MR LN GW++ R+R + SF +L Sbjct: 282 HPFFKNIREK--NNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSFASYNLW 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ ++ +D + + Q +G S+ RI+NP QGK DPQG FI+ Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPQGKFIK 397 Query: 427 HWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 WLPEL ++ +IH P + +NY PI+D + + + K+ Sbjct: 398 KWLPELKDLSLNFIHEPWLLSRFNKEEYEQINYIRPIIDIPNSTKNAKKKIQEITKK 454 >gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired Ds Dna gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double Stranded Dna Containing A T(6-4)c Photolesion gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion And F0 Cofactor gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In Complex With The Non-Natural N4-Methyl T(6-4)c Lesion Length = 543 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 198/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + + V +FI P + A + F+ Sbjct: 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQ 88 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E V RD Sbjct: 89 QTLEDLDNQLRKLNSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + P + FP GE AL + + K++++ Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 264 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 265 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 323 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 324 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 382 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 383 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 441 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 442 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPH 501 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 502 RIVKHEVVHKENIKRMGAAYK 522 >gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 187/483 (38%), Gaps = 26/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++LVWL+ DLR+TD+ L A + + V+ ++I P S R F++ S+ Sbjct: 3 TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+Q F ++ + L + Q + +F +++ +N Sbjct: 62 MNAQLAQHNQKVSV----MFGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSA- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + G+++ A + + + + + +L S + + + Sbjct: 117 ---WLQAQDIPWHEFEHGAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVEAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 P + + + G A L F + + Y P T+ L Sbjct: 174 GFTFTPPPS---WLEKVKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTASRTACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + + L W + + Sbjct: 231 SPYLAWGNISLREVYQYLLQHWQ--VTGFRRSLIALSSRLHWHCHFMQKFESECEMEFRC 288 Query: 306 PFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + ++ ++ AWK G TG P++DA MR L+ G+++ R+R + SFL Sbjct: 289 VNQAYDPLLRQASNNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFRMRAMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G RI+NPT Q + D G Sbjct: 349 HMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDTDGE 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VPT + P + Y P +D + + + +A Sbjct: 407 FIHKWIPELAKVPTPLLFEPWKMTAMEVVMYQLEPDSKYLAPTIDVEASAKAARERLWAW 466 Query: 478 KKQ 480 +K+ Sbjct: 467 RKR 469 >gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum] Length = 698 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 221/503 (43%), Gaps = 30/503 (5%) Query: 1 MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 M A+ +MS +VW R DLR+ DN A AA + +V+ ++ PE+ + Sbjct: 1 MSASPSMSGGAGERTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYP 59 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ SL + SL + G + S D++ L T LF+N Y+ Sbjct: 60 GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD +++ L I +S L P +L+ + ++TPF + + Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPP 177 Query: 173 -----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 R R + + G QNA F + Sbjct: 178 APMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPL 237 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLN 283 Y R TS LSPYL G LS R+ +++++ + + + G +L Sbjct: 238 IDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFLR 297 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P KP + W + + W+QG TG+P++DA MR+L Sbjct: 298 SIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 356 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 357 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 416 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYP 457 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L NYP Sbjct: 417 ELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP 476 Query: 458 LPIVDHKKACHH---TLNQYYAA 477 LPIV+ +A L++ + Sbjct: 477 LPIVELDEAKSRLQDALSEMWEL 499 >gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344] Length = 497 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 230/494 (46%), Gaps = 24/494 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW +DLR++D+ AL A S VI V++ E+ + + Sbjct: 12 LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 70 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 125 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ L + I ++ L PG ++N + Y+V++ + +A ++ V A P Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 185 Query: 180 PAIRLTGPVTPSNIP---------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 P + + + GE A LR F ++ Y Sbjct: 186 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 245 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 246 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREF 304 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +P + + + W D L AW++G TG+P +DA MR+L GWMH Sbjct: 305 GWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 363 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFN Sbjct: 364 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 423 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464 P QG++FDP G ++R W+PEL +P IH P L YPLPIV + Sbjct: 424 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 483 Query: 465 KACHHTLNQYYAAK 478 A L+ + A + Sbjct: 484 AARRRALDAFGAIR 497 >gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus] gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus] Length = 529 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 123/491 (25%), Positives = 189/491 (38%), Gaps = 29/491 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R LR+ DN AL AA +S+ V V+I I A + HF+ SL ++ Sbjct: 6 IHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLR 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL Q G Q + + + + +T++ + + E + + + Sbjct: 65 SSLRQLGSCLLVIQ----GEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGEE 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 IL + ++ L ++ A Sbjct: 121 LGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDFQRCS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQRDI 236 P D P G Q L + + Sbjct: 181 PPELGLAECYGVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADQGWVASFTKPKTVPN 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + T+ LSPY S G LS R + RL + S +L+WREF+ + +A Sbjct: 241 SLLPSTTGLSPYFSTGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVA 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P +I W +D+ L WK TGFP IDA M QL GW+H+ R Sbjct: 299 SATPNFTKMAGNPICLQIRWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHA 358 Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P G Sbjct: 359 AACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 +R DP+G +IR +LP L N P++YI+ P + ++ + +YP P+VDHK+A H Sbjct: 418 RRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASDH 477 Query: 470 TLNQYYAAKKQ 480 L A+++ Sbjct: 478 NLQLMKQAREE 488 >gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium SWAT-3] Length = 497 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 101/482 (20%), Positives = 187/482 (38%), Gaps = 26/482 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++++VWL+ DLR+TD+ L A + I ++I P S R F++ SL Sbjct: 3 TINVVWLKRDLRLTDHAPLQHAL-SDQYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G +++ ++ + + LF +++ +N Sbjct: 62 MNQSLKAYGHQVSILH----GSAVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELSTW 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + R + ++L A+ ++ P Sbjct: 118 FTEHNIPWQEFAQGAVVRGSKDRVGWDKHWNSVMRAPIEESLFTAE-------SLHTLDP 170 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 ++ + G A L F + Y P ++L Sbjct: 171 EELELAMEPPQAWLTKVNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRHACTRL 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + L W + ++ Sbjct: 231 SPYLAWGNISLREVYQHLLGHWQVAG--FRRSLIALSSRLHWHCHFMQKFESECAMEYRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + E KD LQAWK G TG P++DA MR L+ G+++ R+R + SFL Sbjct: 289 INHAYEALLQKETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMRSMLVSFLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + +DWR G + LD + + +Q A G + RI+NPT Q + D G Sbjct: 349 HMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQA--GVTGINTIRIYNPTKQAQEHDSDGD 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLNYP--LPIVDHKKACHHTLNQYYAA 477 FIR W+PEL+++PT + P +L ++P P+VD + + + ++ Sbjct: 407 FIRKWVPELSDIPTPLLFEPWKMTPMEVMMHELEPDFPYLNPVVDLEVSAKEARVRLWSW 466 Query: 478 KK 479 +K Sbjct: 467 RK 468 >gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB 48] gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] Length = 484 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 144/494 (29%), Positives = 220/494 (44%), Gaps = 30/494 (6%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M+ ++W R+DLR+ D++ A NS + V+ V+I EQ Q + A ++ SL Sbjct: 1 MTQTTILWFRSDLRLQDHEG-VEATLNSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL +G + ++ L Q T+L +R +E D L K Sbjct: 59 RSLDQSLRARGARLIVLK----GSALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSK 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + + F+ +L P I YKV+TPF +AL+ + Sbjct: 115 ALG--IPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPWPA 172 Query: 186 GPVTPSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P ++ + + ++ GE A L F + + Y RD Sbjct: 173 PAEWPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRD 232 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P + TS+LSP+L G +SP + E + EL WR+F +++ Sbjct: 233 RPDLDITSRLSPHLRFGEISPHRVL-HEAEAHAAAHPALSDDLEKFRAELAWRDFSYNIL 291 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + F + + W D L+AW++G TG+ ++DA MRQL G+MHNR+RM Sbjct: 292 QLQPELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMHNRVRM 350 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + ASFL K LL+DWR GE++F L+D D ASN WQW A +G D+ PYFRIFNP Q Sbjct: 351 VCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFNPLTQA 410 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---------SLNYPLPIVDHKKA 466 ++FDP+G + R ++ A H +++ S P IVDH A Sbjct: 411 EKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIVDHAVA 470 Query: 467 CHHTLNQYYAAKKQ 480 L+ Y KK Sbjct: 471 RQRALDAYAQMKKD 484 >gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 104/481 (21%), Positives = 178/481 (37%), Gaps = 22/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA S + ++ P +S +FIY SLL++ Sbjct: 4 INVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLEM 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK L S S+E ++ +F ++++ + Sbjct: 63 QKKLEPFNRPLYILHAS----SVEAFAYIQKNYQIKNIFAHQEHGTTRTWKRDRQIIDFC 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + I K + N+++ + P Sbjct: 119 ----WQEKIELLEAEHSGIKRGIQNRDKWDKAWFSWHSANIIRNSYSKGHFTFDQDLFPA 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 Y +P + + K Y+ + + + +LSPY Sbjct: 175 VFYFKYHSKPYSKNLQNPGE--DTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRLSPY 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S RQ + +KE K L + WR + S Sbjct: 233 LAWGNISSRQVYQFIKESPKYKDNKRAYSG--LLTRIKWRSHFIQKFEVECSYE-YLYLN 289 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E + N ++ ++AW++G TG+P++DA MR L+ GW++ R+R + SF L D Sbjct: 290 KGYELLSLNFNAEHIRAWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQD 349 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G + LD + + +Q A G + RI+NP Q DP G FIR W Sbjct: 350 WRDGVYHLAKLFLDYEPGIHFPQFQMQA--GTTGINTVRIYNPIKQSMDNDPHGEFIRQW 407 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQSL 482 +PEL + IH P YP PI+D K+ ++ + + L Sbjct: 408 VPELKELNNNEIHEPWKIELMEAKMKGYANLHLYPDPIIDIKETYRLARDRIWGLRTNPL 467 Query: 483 L 483 + Sbjct: 468 V 468 >gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9301] Length = 498 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 100/477 (20%), Positives = 191/477 (40%), Gaps = 31/477 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI DN+AL A ++D ++ ++I + W Q+ S RQ F SL+ + Sbjct: 4 INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLIDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + +L++ G + I D + ++ L+ +++ + + Sbjct: 62 RNALAEIGQPLIIRT----GNVINIFDEISSKFKIKGLYSHQETGDWLTYKRDQKVREWA 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L+ K K L++ ++ + + + Sbjct: 118 LSKNIIWKEFLQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLRIN---------SINLNI 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 + F + + G + L ++ F K+ Y + P ++LS Sbjct: 169 GEIPSDKIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTRLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY+ G +S ++ + I + + + L W + + P + + Sbjct: 229 PYICWGCISLKEIF-------KRANISKNNNSRMLKSRLTWHCHFIQKLESEPELEFREY 281 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + E ++ LL +W G TGFP IDA MR LN GW++ R+R + SF +L Sbjct: 282 HPFFKNIREK--NNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ ++ +D + + Q +G S+ RI+NP QGK DPQG FI+ Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPQGKFIK 397 Query: 427 HWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL ++ +IH P + +NY PI+D + + K+ Sbjct: 398 KWIPELKDISLNFIHEPWLLSIFNQEEYEKINYIRPIIDIPISTRTAKKKIQEITKK 454 >gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2] Length = 472 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 222/482 (46%), Gaps = 27/482 (5%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLR+ D++AL AAC ++D VI VFI + A + S Sbjct: 1 MSKSPILMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYDEL---TESMGAAPKMRLGLS 56 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + SL++KG + +++ L ++++R Y+ + RD ++ Sbjct: 57 VADLAASLNEKGSKLILRR----GKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVK 112 Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPV 179 L+ I +SF VL P ++ YKVYTP K++ N V A Sbjct: 113 AALKDDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPAALPTPGTIPVP 172 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + + + + +GE A H L F V YV+ RD+PA+ Sbjct: 173 DSWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPAV 232 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS LS L+ G +SPR+CW+ + D A ++L EL+WREF HL P Sbjct: 233 DGTSGLSENLTYGEISPRKCWHSGWQALNDGKG----DAETFLKELVWREFAYHLAYHTP 288 Query: 300 SVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + ++AWKQG TG +DAAMR++ G MHNR RMI A Sbjct: 289 RITTDNWKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S+L K LL W+IG +F L+D D SN GWQW+A +G D+ PYFR+FNP Q +F Sbjct: 349 SYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D +I+ W+ E P+ Y P SW +YP PIV L+ Sbjct: 409 DKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQ--DSYPDPIVPADVGRSRALDA 466 Query: 474 YY 475 Y Sbjct: 467 YQ 468 >gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] Length = 505 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 95/483 (19%), Positives = 168/483 (34%), Gaps = 28/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW + DLR+ D+ L A V+ +++ PE W +S RQ F ++ Sbjct: 10 PLTVVWFKRDLRLHDHAPLSQAAQA--GTVLPLYVIEPEYWALPDVSYRQWRFWAGAIAD 67 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ ++ G ++ L L +++ + Sbjct: 68 LQQQIATLGGQLCLRS----GAVVDVLSQLRADYGPFDLVAHQETGNAWTFARDN---AV 120 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D + G AL + + + L P Sbjct: 121 RDWCHRNGADFTEHQQHGIWRGAALDRNRWAKRWDAMMAAPLTPIPSDIDWARVTSDALP 180 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 + I M G A L F ++ Y + P S+L Sbjct: 181 DAAALGLTD-----DGIVAMQSPGLAAARATLDSFLHDRGAPYQKAMSSPVSGETACSRL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL-------LIKPKSGAFSWLNELIWREFYRHLMAFY 298 SP+L G +S R+ + + S S++ L W + + Sbjct: 236 SPHLMAGSISMREVYQATLARQSAVAALPKADRGTWPSAMKSFVGRLHWHCHFMQKLEAE 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + + DS LL A+++G TG+P +DA MR L GW++ R+R + Sbjct: 296 PEIEWLPMARIYEGLRPTPTDSSLLSAFEEGRTGYPFVDACMRYLRATGWINFRMRAMLM 355 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF +L + W+ D + + Q +G + RI++P QG Sbjct: 356 SFASYNLWLPWQQSGTVLARLFTDYEPGIHWPQSQ--MQSGETGINAVRIYSPVKQGYDQ 413 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP G F R W+PEL ++ + + P + L YP IVDH++ + Y + Sbjct: 414 DPTGVFTRQWVPELAHLTGKALQDPWTLDA---LPKGYPARIVDHQQTAREAKQRIYGLR 470 Query: 479 KQS 481 + + Sbjct: 471 RTA 473 >gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] Length = 504 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 112/483 (23%), Positives = 187/483 (38%), Gaps = 33/483 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LVW + DLR+ D+K L A V+ +++ PE W+Q S RQ F SLL Sbjct: 1 MALQLVWFKRDLRVKDHKPLQQALLR--GPVLPLYVVEPELWQQQDASERQWLFCRESLL 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L+ G D +E + Q + L+ + + + Sbjct: 59 DLRLALAALGQPLLVRS----GDVVEVFERAHRQFGLEALWSHEETGNGWTYQRDQRVAL 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +P ++ + + + + + + L + I G Sbjct: 115 ----WCRQHGIAWKEIPQFGVIRRLRSRTRWAKRWEAQMAEPITPSPLGLPSIEGIDA-G 169 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ-- 244 + P P G AL L F + + Y P T Sbjct: 170 VIPDCPHPTLASDPCPH---RQSGGRSMALLELDDFLEHRAPGYARSISSPNTAFTGCSR 226 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ G LS R+ G S+ + L W + + PS+ Sbjct: 227 LSAYLTWGCLSMREVIQT-------SRGFSGRGISSFESRLHWHCHFIQKLEAQPSIEF- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P+ + D L AW +G TG P +DA MR L GW++ R+R + SF Sbjct: 279 EDFHPFMRGLRCTND-QRLLAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYH 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR + Q +D + + Q +G+ ++ R++NP QG+ D G F Sbjct: 338 LWLPWRDSGLHLARQFVDYEPGIHWS--QCQMQSGSTAINTVRVYNPIKQGQDHDLNGEF 395 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL+ V Y+H P L ++YPLP+V+ A + +A + Sbjct: 396 IRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALAAREAKQRIWAIR 455 Query: 479 KQS 481 ++S Sbjct: 456 ERS 458 >gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818] Length = 540 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 119/499 (23%), Positives = 189/499 (37%), Gaps = 36/499 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V + W R LR+ DN A A +V VF+ P + + + +F+ SL Sbjct: 5 AVSIHWFRKGLRLHDNAA-LLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLESLRD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + KSL G + ++ L+ + VT+L + R E RD + Sbjct: 64 LDKSLRTLGSRLYVLK----GKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELA 119 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPF------------RKALIQNLVQADL 174 + I P + A K+ + A + + D Sbjct: 120 EKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSAPTKEDF 179 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQ----NALHILRKFCKEK 226 ++P D ++ D P GE L++ Sbjct: 180 PQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKAWIA 239 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + T+ LSPYL G LSPR ++ L + + K S +L+ Sbjct: 240 HFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKPPV-SLHGQLL 298 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREF+ + + +I+W+ + LL AW+ TG+P IDA M QL Sbjct: 299 WREFFHMCGYAVKNFDRME-GNRICRQIDWDTNDALLAAWENARTGYPWIDACMTQLRRE 357 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW+H+ R A FL + DL W G + F L+D D N+ W W + + Y Sbjct: 358 GWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMWLSCSSFFYQ-Y 416 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459 FR+++P GK+ DP G +IR +LP+L P +YI+ P + +YP P Sbjct: 417 FRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDYPEP 476 Query: 460 IVDHKKACHHTLNQYYAAK 478 IVDH + + A Sbjct: 477 IVDHAEVSAANKARIRACY 495 >gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 464 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 222/480 (46%), Gaps = 30/480 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN AL+ A + I +FI Q I +++ Sbjct: 4 KIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQE----IGGASKLWLH----- 52 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 SLS + +E + + +T ++NR Y+ + RD +++ L Sbjct: 53 --HSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFL 110 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIR 183 Q + I S + L + P YKVYTPF + + S Sbjct: 111 QEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKL 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T S +Q I + IGE + IL +F KV Y RD + TS Sbjct: 171 ETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G +SP Q +N + L + ++ EL+WR+F + + +YP Sbjct: 231 KLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LH 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR+RMI ASFL+K Sbjct: 285 NKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFLIK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 345 NCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-E 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR ++PEL +P + I P + L NYP P++D KK+ L + Sbjct: 404 YIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPVIDLKKSRDKALELHKKL 463 >gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus] Length = 542 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 119/503 (23%), Positives = 188/503 (37%), Gaps = 35/503 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59 M ++ S + W R LR+ DN+AL AC N A + +F+ + + ++ Sbjct: 1 MSSSKEPS-SIHWFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPESRAGPLRTA 58 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + + L KG + E L + V KL + E R Sbjct: 59 FLLESLQDLDEQLRAKGSRLFVVR----GKPEEVLPQLFEEWNVKKLTFEADSEPRSRAR 114 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + + + + L + + + L Sbjct: 115 DREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDC 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------LHILRKF 222 P P +Y +I + +G + ++ + Sbjct: 175 APDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMARE 234 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + T+ LS Y+S G LS R+ W+ L + + S Sbjct: 235 DWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSK--PPVSLK 292 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+W+EF PS P +I W+KD L AWK+ TGFP IDAAM Q Sbjct: 293 GQLLWKEFNYFSGYSIPSFDKM-VGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQ 351 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL W G F LLD D + NN WQW + + Sbjct: 352 LKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFF 411 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455 YFR ++P GK+ D G +I+ +LP L P++YI+ P + + + + Sbjct: 412 YQ-YFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKD 470 Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478 YP PIVDH + + A Sbjct: 471 YPKPIVDHADTSKANMAKMNDAY 493 >gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1] Length = 534 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 141/488 (28%), Positives = 228/488 (46%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A ++ ++ +++ P HG S + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + QC N +E + +Q+V+ +F N +YEI+E+RRD L K + Sbjct: 110 MQKELKDLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 ++ + D ++ PG++L KV+TP+ KA + L P Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWLAKLRSEPELLDTNPPPAANPS 229 Query: 187 --------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P S+ + + I ++P G A +++ +Y Sbjct: 230 SMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASA-RMDTFLKQISHYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWR 288 R PA TS++S Y S G++S R ++ + + +G + W+ E+++R Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467 FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + YP P VD K+ Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWKETK 518 Query: 468 HHTLNQYY 475 ++++ Sbjct: 519 ARAIDRFK 526 >gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio] Length = 558 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 120/488 (24%), Positives = 196/488 (40%), Gaps = 28/488 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69 + R LR+ DN +L A +S + + V++ + + A + F+ SL + Sbjct: 6 IHLFRKGLRLHDNPSLLGALASS-STLYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G + L Q +T++ Y+ + E R DK ++ Q Sbjct: 65 TRLRAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S I+ + ++ L + + + V V Sbjct: 121 NGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIP 237 TP ++ R + P + ++P GE +A + + Sbjct: 181 TPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPNS 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + T+ LSPYLS+G LS R ++RL + S +++WREF+ + + Sbjct: 241 LLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPV-SLQGQVLWREFFYTVASA 299 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P+ + +I+W D L+ W+ TGFP IDA M QL GW+H+ R Sbjct: 300 TPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAV 358 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P G+ Sbjct: 359 ACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFCPVRFGR 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 R DPQG ++R +LP L N P+QYI+ P + + +YP PIV H +A Sbjct: 418 RTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRN 477 Query: 471 LNQYYAAK 478 L + Sbjct: 478 LALMRQVR 485 >gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum] Length = 700 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 137/505 (27%), Positives = 220/505 (43%), Gaps = 32/505 (6%) Query: 1 MKATTAMS---------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 M A+ +MS +VW R DLR+ DN A AA + +V+ ++ P++ + Sbjct: 1 MSASPSMSGGAGERTRTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPKEDGPY 59 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 ++ SL + SL + G + S D++ L T LF+N Sbjct: 60 YPGRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHL 117 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170 Y+ + RD +++ L I +S L P +L+ + ++TPF + + Sbjct: 118 YDPLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVD 177 Query: 171 QA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 R R + + G QNA F Sbjct: 178 PPAPMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFING 237 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSW 281 + Y R TS LSPYL G LS R+ +++++ + + + G + Sbjct: 238 PLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLF 297 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L + RE+ R L +P KP + W + + W+QG TG+P++DA MR Sbjct: 298 LRSIGLREYSRRLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMR 356 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 357 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPD 416 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L N Sbjct: 417 GRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSN 476 Query: 456 YPLPIVDHKKACHH---TLNQYYAA 477 YPLPIV+ +A L++ + Sbjct: 477 YPLPIVELDEAKSRLQDALSEMWEL 501 >gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia] gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia] Length = 540 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E + RD Sbjct: 66 QTLEDLDNQLRKLDSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + + P + FP GE AL + + K++++ Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W K L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQKHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae] Length = 507 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 115/493 (23%), Positives = 194/493 (39%), Gaps = 31/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 + W R LR DN +L A S V V++ ++H A F+ L ++ Sbjct: 10 IHWFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEEL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + G+ + + ++ + + +VT+L ++ E RD + K Sbjct: 69 DTRLRKYGLRLFVVR----GSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIAS 124 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + + + + Sbjct: 125 DMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFANC 184 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-------------RKFCKEKVYYYVEQR 234 P + + ++ + + A + + + Sbjct: 185 TLPPEALQDKKFDMVTLEELGMRCDFPAKFVGGETEALRRLEKSLEDKDWVLKFEKPKTS 244 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + T+ LSPY+++G LS R +++L + + + S +LIWREF+ Sbjct: 245 PNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSKAKNHSQPPV-SLHGQLIWREFFYTA 303 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 A P+ + +I WNK+ L W+ TGFP IDAAM QL GW+H+ R Sbjct: 304 AAHTPNFNQME-GNRVCLQIPWNKNDEHLTRWRNAQTGFPWIDAAMTQLRKEGWIHHLAR 362 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W +++ YFR+++P + Sbjct: 363 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMWLSASAFFHQ-YFRVYSPIV 421 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 GK+ DP+GTFIRH+LP L N P +YI+ P + +YP PIVDHK+A Sbjct: 422 FGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGKDYPRPIVDHKEAS 481 Query: 468 HHTLNQYYAAKKQ 480 L+ +K Sbjct: 482 QRNLDIMRDVRKD 494 >gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis] Length = 431 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 148/468 (31%), Positives = 214/468 (45%), Gaps = 42/468 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +WLR DLR+ D AL AA D+ V+ F+ P R R+ F++ SL ++ Sbjct: 1 MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARSS--GERRLAFLFDSLRELDDK 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + +V + E + + + + RRD+ + + L Sbjct: 59 LDGRLLVVR-------GRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVP 111 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + ++ P G I + YKV+TPF + + + S + + Sbjct: 112 LEATGSPYLVSP-GRITKDDGEPYKVFTPFFRRWRDHGWRRPAESSVPSSAVV--DPADI 168 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P + FP GE A +F + Y E RD PA TS++S YL Sbjct: 169 ANSGRIAVPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G + PR L + GA ++L EL +R+FY ++ +P + Sbjct: 229 GNIHPRTLAVDLGK---------GKGAQAYLRELAFRDFYADVLWHWPHSLWHNWNRRFD 279 Query: 312 --EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + + WK G TGFP++DA MRQLN GWMHNR+RMITASFLVKDL + W Sbjct: 280 AIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDLHLPW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP Q K+FDP+G ++R W+ Sbjct: 340 WWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYVRRWV 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + + +YP PIVDH L +Y Sbjct: 400 -------------------GDVEADDYPGPIVDHSAERAEALRRYGEI 428 >gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group] Length = 710 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 136/490 (27%), Positives = 220/490 (44%), Gaps = 30/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + + D++ L T LF+N Y+ + RD ++ L Sbjct: 80 SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTA 136 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P +++ + ++ PF + + L P G + Sbjct: 137 EGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLPPKRIAPGEL 194 Query: 189 TPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + + G QNA L F + Y R Sbjct: 195 PARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSA 254 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ +++++ + + +L + RE+ R+L Sbjct: 255 STSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH- 469 +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ A Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRL 493 Query: 470 --TLNQYYAA 477 L++ + Sbjct: 494 QDALSEMWEL 503 >gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio metschnikovii CIP 69.14] Length = 492 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 96/488 (19%), Positives = 188/488 (38%), Gaps = 24/488 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TT S+++VW + DLR++D+ L AA +S + V+ P S R F Sbjct: 1 MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + + L+ G S + + L + + L+ +++ + Sbjct: 58 VWQSLQDINQQLASFGHQILIANVS----AEQGLATLAAHFSIQGLYSHQEVGLVNTFER 113 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + G++ A ++ + L ++ + + Sbjct: 114 DI----AIQHWCTEQGISWHQSAYGAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQGLI 169 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 ++ T +N+P + + + + L + + Y+ + + + Sbjct: 170 SVCATDLGLDNNVPSAWRRKEKGLQTGGETLAKQTLEDFFQRRAKNYYFQISSPSLARLS 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + +SPYL+ G +S R+ + L + ++ + + L W + Sbjct: 230 CSR-MSPYLAWGNISLREMYQTLLSYWNAAGLRR--SLIALASRLHWHCHFIQKFESECE 286 Query: 301 VCMGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + D+ LL+AWK G TG P++DA MR L G+++ R+R + Sbjct: 287 MEFRCVNRAYEPLLAQACQPDTELLEAWKSGQTGIPLVDACMRCLYHTGYLNFRMRAMLV 346 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L + +WR G + LD + + +Q A G + RI+NP Q + Sbjct: 347 SVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQA--GVTGINTIRIYNPIKQAQEH 404 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLN 472 D QG FIR W+PEL VP + P L + Y P++D + Sbjct: 405 DAQGVFIRQWVPELAEVPLSLLFEPWQMSPMEAMMYQLPADSRYLNPVIDVAACAKQARD 464 Query: 473 QYYAAKKQ 480 + +A +K+ Sbjct: 465 RLWAWRKR 472 >gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 509 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 98/489 (20%), Positives = 183/489 (37%), Gaps = 30/489 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D++ L +A + ++ P + R F+Y S++ Sbjct: 4 KINIVWFKRDLRLSDHQPLKSAFDTG-LPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L++ ++ L Q ++ +F +++ +N Sbjct: 63 LNSQLARFNAKVYTFN----ENMQTLLQKLNGQFEISYIFSHQEIGLNNT---------F 109 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + K++ + A+ K Q +QA L + Sbjct: 110 ERDLAIKAWCHHNHINWQESPTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKNVNSVK- 168 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 + P + Q D G +A +++ F ++ Y + P+ S+L Sbjct: 169 LKNYKNPELPETYTQDDDNFQQGGPLHAREVMQSFFTQRGKGYQKGISSPSLSRTHCSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304 SPYL+ G +S RQ + + + K + ++ H M + S C Sbjct: 229 SPYLAWGNISLRQVYQTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQKFESECTME 288 Query: 305 ----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P H ++ W QG TG PIIDA MR L G+++ R+R + SF Sbjct: 289 FKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFRMRAMLVSF 348 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + W+ + LD + + Q AS + R +NP Q + DP Sbjct: 349 VTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQAS--VTGINTIRHYNPIKQSEDQDP 406 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G FI+ W PEL +P +Y+H P + L +YP P++D A + Sbjct: 407 TGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLDLTLASKDARERL 466 Query: 475 YAAKKQSLL 483 + + + + Sbjct: 467 WQYRDRPEV 475 >gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group] gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group] gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group] Length = 718 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 136/490 (27%), Positives = 220/490 (44%), Gaps = 30/490 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + + D++ L T LF+N Y+ + RD ++ L Sbjct: 80 SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTA 136 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +SF+ +L P +++ + ++ PF + + L P G + Sbjct: 137 EGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLPPKRIAPGEL 194 Query: 189 TPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + + G QNA L F + Y R Sbjct: 195 PARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSA 254 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ +++++ + + +L + RE+ R+L Sbjct: 255 STSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH- 469 +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV+ A Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRL 493 Query: 470 --TLNQYYAA 477 L++ + Sbjct: 494 QDALSEMWEL 503 >gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta] gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta] Length = 540 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 198/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + G + E RV L + E + RD Sbjct: 66 QALEDLDNQLRKLGSRLFVVR----GKPAEVFPRIFKSWRVEILTFETDIEPYSLSRDAS 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + L Sbjct: 122 VQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGAPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + P + FP GE AL + K++++ Sbjct: 182 QNITTPPNDEVEQEDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKDELWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-MGNVYCMQIPWQEHPNHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P+ I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera] gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera] Length = 570 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 116/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P I + F+ L + Sbjct: 24 VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLEDLDC 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 83 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 138 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + ++ ++ + V + + T Sbjct: 139 GISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYT 198 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 199 PLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 258 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 259 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV--PPLSLHGQLLWREFFYCA 316 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 317 ATKNPNFDRMQ-GNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 375 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 434 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + +Y LP+V+H K+ Sbjct: 435 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSS 494 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 495 RINIERMKQVYQQ 507 >gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 151/498 (30%), Positives = 208/498 (41%), Gaps = 37/498 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIYA 63 S L W R DLR+ DNK L AA A V V++ P ++ + F+ Sbjct: 4 SRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARLWFLVE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++Q+ G D + L L ++R E RD+ + Sbjct: 63 TLRELQQRWRDAGSRLIV----VAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERDRQV 118 Query: 124 EKRLQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 K LQ D G + + + + V+A Sbjct: 119 AKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVEAPTG 178 Query: 176 SLPVPAIRLTGPVT--------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + + +L + + GE A L Sbjct: 179 LCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRPGEAAAAEQLAT 238 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFS 280 F + Y R+ P + GTS LS LS+G LSPRQ W +E + + + + Sbjct: 239 FVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQRQAITV 298 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDAAM Sbjct: 299 WEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPIIDAAM 357 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G Sbjct: 358 RQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGM 417 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D P RIFNP Q +FD G +IR W+PEL +V T+ + S YP + Sbjct: 418 DPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDL---LSGEIAALERRGYPELL 473 Query: 461 VDHKKACHHTLNQYYAAK 478 V+HK Y + Sbjct: 474 VNHKTQQARFKALYATIR 491 >gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus PAl 5] Length = 463 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 145/463 (31%), Positives = 217/463 (46%), Gaps = 33/463 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R D RI DN AL A + + I H A +++ ++ + + Sbjct: 10 IVWFREDFRIADNMALLEA-EKRGQPTLCIVILD----DAHLPGAAARWWLHGAIRSLDE 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + + L + +F+NR+Y+ D ++ L+ R Sbjct: 65 TLRGMGGALHVFR----GAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120 Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +SF ++L P S+ ++ YK++T F +A P + P Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPM 180 Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P ++ + M+ GE+ A L F + Y RD P + Sbjct: 181 PDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS+LSP+L G +SP Q W+ + +L EL WR+F L+ F P Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKA---------CPDKFLMELGWRDFAWSLLFFNPD 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + P + + W D L AW++G TG+P++DA MR+L GWMHNR+RM+ ASF Sbjct: 292 LATRN-LRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK LL+DWR GE +F L+D D ASN WQW A TG D+ PYFR+ NP +Q ++FDP Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 G +IR W+PEL ++ IHAP ++ + YP PIVDH Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449 >gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 485 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 108/481 (22%), Positives = 192/481 (39%), Gaps = 26/481 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW + DLR+ D+ AL+ A + ++I P R F+Y SL + Sbjct: 1 MNVVWFKRDLRLHDHDALFKAISLGK-PCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 K LS G + ++++ L + + + +F +++ I R Sbjct: 60 NKQLSPYGHRLTVIK----GEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRD----RKI 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + P G+++ + + +++ +L + Sbjct: 112 EYWCKNNSIVWQQSPHGAVVRGLQHRLYWQDHWYNYMARSIPPIEL------NKLKSEQS 165 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLS 246 ++ F D Q GE +A+ L F ++ +Y P+ S+LS Sbjct: 166 CLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSISSPSRSRHYCSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G LS R C+ + + F K AFS + L W + + Sbjct: 226 PYLAWGNLSLRYCYQQTQLAFAQSKGKQHLNAFS--SRLHWHCHFIQKFESESRMEFEAV 283 Query: 307 FIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + D L W+QG TG+P++DA +R L T G+++ R+R + SF Sbjct: 284 NRGYLDFPYDIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGYLNFRMRAMLVSFACHY 343 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ EY LD D + Q A G RI+NP Q + DP+G F Sbjct: 344 LNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQA--GITGTNTIRIYNPVKQSQEQDPEGEF 401 Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 IR W PEL+++ IH+P L+K +L+YP P+V+ + ++ + + Sbjct: 402 IRLWCPELSSLSNDVIHSPWLLGPLEKQMFALDYPEPMVN-ADCIQINRERLWSWRSRDK 460 Query: 483 L 483 + Sbjct: 461 V 461 >gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum 255-15] Length = 451 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 171/475 (36%), Positives = 245/475 (51%), Gaps = 30/475 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 M++ + W+R+D R+ DN L A + A V VF P+ ++ + + + Sbjct: 1 MNI-ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEYD---ARQQYFF 56 Query: 63 ASLLQVQKSLSQKGIVFQYHQC--SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +L K+ + ++ + +F ++ E D + F +R I + R D Sbjct: 57 QALEHFAKNCKTHDMPIRFIEGQEKDFLEATEMADVLLFNAEYVEPFKSRDDGIMKKRGD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 K E+ L LL P ++ + YKV+TP++ A ++ V Sbjct: 117 KKTERLLD----------RHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVDKPYPVKLNL 166 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +N + A D F +GE+ A LR F K + Y EQRD+PA+ Sbjct: 167 LKERYHKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVD 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS +S YL G + R ++ +++E G ++L ELIWREFY ++ YP Sbjct: 227 GTSLMSRYLRTGEIGIRTIFDAVQQEQDSK------GKQTYLTELIWREFYYTILMHYPE 280 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P KIEW D +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASF Sbjct: 281 -SKRLPVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 339 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L KDLLVDW+ GE YF +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD Sbjct: 340 LTKDLLVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDK 399 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 GTFIR +LPEL ++P IH P ++ +YP+PIV+H A + ++ Sbjct: 400 DGTFIRTYLPELKDLPKTSIHEP---TEQQRKDYDYPMPIVEHDMARKRAIARFK 451 >gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17029] gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 471 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 208/474 (43%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L + + + ++R +E + RD+ + L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119 Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 I + + P + Y+VYTPF KA+ V R ++ Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + GA +L EL WREF HL+ P + Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 R +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 RRFLAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466 >gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 534 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 140/488 (28%), Positives = 230/488 (47%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A ++ ++ +++ P HG SA + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + QC + +E + +Q+V+ +F N +YEI+E+RRD L K + Sbjct: 110 MQKELKDLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------------- 173 ++ + D ++ PG++L K++TP+ KA + L Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWLAKLRSEPELLDNNLPPAANPS 229 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 ++ P S+ D + I ++P G A +++ +Y Sbjct: 230 SMKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASA-RMDSFLKQISHYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWR 288 R PA TS++S Y S G++S R ++ + + +G + W+ E+++R Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467 FNP Q ++ DP G +IR W+PEL +V + + AP++ L K + YP P VD K+ Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKETK 518 Query: 468 HHTLNQYY 475 ++++ Sbjct: 519 ARAIDRFK 526 >gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155] Length = 481 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 105/481 (21%), Positives = 183/481 (38%), Gaps = 22/481 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA S+ + ++ P +S +FIY SL+++ Sbjct: 4 INVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLMEM 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L+ D+ + L + +++ LF ++++ + Sbjct: 63 QTKLAPFNRPLYILHA----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDRQVIDFC 118 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + I + ++V+ P + P Sbjct: 119 ----WQEEIELLEAEHSGIQRGIQNRDHWDKAWFSWHKTDIVRNSYSISPFNFDKSLFPA 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 F YP Q P + + K Y+ + + + +LSPY Sbjct: 175 ALQFKKTFKTYPKQMQAPGE--NTAHHYLKSFLAERGKNYHRFISKPSESRKSCGRLSPY 232 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S RQ + +K K L L WR + S Sbjct: 233 LAWGNVSSRQVYQLVKASPKYKDNKRAYSG--LLTRLKWRSHFIQKFEVECSYE-YLCLN 289 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E + + ++ ++AWK G TG+P++DA MR L+ GW++ R+R + SF L D Sbjct: 290 KGYELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQD 349 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G + LD + + +Q A G + RI+NP Q DP+G FIR W Sbjct: 350 WRDGVYHLAKLFLDYEPGIHFPQFQMQA--GTTGINTVRIYNPIKQSMDNDPEGEFIRQW 407 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQSL 482 +PEL ++ IH P YP PI+D K ++ + + +L Sbjct: 408 IPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHLYPAPIIDIKDTYSLARDRIWGLRSHAL 467 Query: 483 L 483 + Sbjct: 468 V 468 >gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 497 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 101/477 (21%), Positives = 186/477 (38%), Gaps = 31/477 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++++W + DLRI +N+AL + ++D ++ +FI E W Q S RQ F S++ + Sbjct: 4 INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL + G + I+ + + + ++ +++ + K Sbjct: 62 RNSLKEIGQPLIIRT----GNVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWA 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + +N + LI+ ++ + + + Sbjct: 118 ANKKIIWREFLQFSVFRGNINRDDWSKNWKKNTERELIKRPLRIN---------PIDFDI 168 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246 + F + G + + ++ F EK+ Y + P S+LS Sbjct: 169 GKIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSRLS 228 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY+S G +S ++ + + + + + + L W + + P + Sbjct: 229 PYISWGCISLKEIFY-------KANLHKNNNSIMFKSRLTWHCHFIQKLESEPELEFHD- 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F P+ + LL W QG TG+P IDA MR LN GW++ R+R + SF +L Sbjct: 281 FHPYFKNSRTKNT-ELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYNLW 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + W+ ++ +D + + Q +G S+ RI+NP QGK DP G FI+ Sbjct: 340 LPWQDSGSELANKFVDYEPGIHWN--QCQMQSGTTSINTNRIYNPIKQGKDHDPDGEFIK 397 Query: 427 HWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL N+ +IH P L Y PIVD K + ++ Sbjct: 398 KWVPELKNIAIDFIHEPWLLGKFNCDEYAKLQYNKPIVDISKTSREARKKIQEITQK 454 >gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio parahaemolyticus 16] Length = 492 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 105/486 (21%), Positives = 185/486 (38%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S++LVWL+ DLR+TD++ L+ A + ++I P S R F+ SL Sbjct: 3 SINLVWLKRDLRLTDHQPLHDAIQDG-TPFALIYIFEPLLLNDPHFSDRHWRFVLQSLDD 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L+ G F D+ + +S + K+F +++ +N Sbjct: 62 INETLTPFGTSVHIL----FGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAA- 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + G++L A + + + L L + P Sbjct: 117 ---WFTSNGIQWHESQHGAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARWVNLEGIEP 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 + P + M G Q A L F + + Y + P+ +++ Sbjct: 174 HMRFSPPLE---WQGKANGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSACTRI 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + L K A + + L W + + Sbjct: 231 SPYLAWGNVSLREVYQYLLQHWQ--LKGFKRSAIALSSRLHWHCHFMQKFESEVEMEFRC 288 Query: 306 PFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + I + + AWK G TG P++DA MR L+ G+++ R+R + S L Sbjct: 289 LNRGYEPLIVQSTRKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRAMLVSVLCH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + DWR G + LD + + +Q A G + RI+NPT Q + DP G Sbjct: 349 HMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQA--GVTGINTVRIYNPTKQAQEHDPDGH 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ WLPEL +P + P + Y PI+D + ++ Sbjct: 407 FIKKWLPELAALPAPLLFEPWKMTPMEIMMYEIPKQSLYLNPIIDVDNCAREARERLWSW 466 Query: 478 KKQSLL 483 +K+ + Sbjct: 467 QKEPAV 472 >gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio] gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio] Length = 558 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 121/488 (24%), Positives = 196/488 (40%), Gaps = 28/488 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69 + R LR+ DN +L A +S A + V++ + + A + F+ SL + Sbjct: 6 IHLFRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G + L Q +T++ Y+ + E R DK ++ Q Sbjct: 65 TRLQAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + S I+ + ++ L + + + V V Sbjct: 121 NGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180 Query: 189 TPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIP 237 TP ++ R + P + ++P GE +A + + Sbjct: 181 TPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPNS 240 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + T+ LSPYLS+G LS R ++RL + S +++WREF+ + + Sbjct: 241 LLPSTTGLSPYLSLGCLSVRTFYHRLNCIYAQSKNHSLPPV-SLQGQVLWREFFYTVASA 299 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P+ + +I+W D L+ W+ TGFP IDA M QL GW+H+ R Sbjct: 300 TPNFTKME-GNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQEGWIHHLARHAV 358 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P G+ Sbjct: 359 ACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFCPVRFGR 417 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 R DPQG ++R +LP L N P+QYI+ P + + +YP PIV H +A Sbjct: 418 RTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRN 477 Query: 471 LNQYYAAK 478 L + Sbjct: 478 LELMRQVR 485 >gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec] Length = 409 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 188/469 (40%), Gaps = 68/469 (14%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 WLR DLR+ DN AL AA + +V+A+F+ + + F++ L + L Sbjct: 3 WLRRDLRLDDNPALLAAAES--GRVLALFVLDDAL--RRPSGPVRLAFLHRCLRDLDAQL 58 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 G S + + L Sbjct: 59 ---GGRLCVRTGSPYAVAPGRL-------------------------------------- 77 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 Y+V+TPF +A ++ + +P + L Sbjct: 78 ---------------RKADGTSYRVFTPFYRAWKEHGWRGPA--IPADPVWLQPADLDGG 120 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP---AIQGTSQLSPYL 249 P + P GE A LR F E + Y RD P + G + Sbjct: 121 SEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGYAAHRDEPAAASESGDAVPGWSG 180 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + + A + +EL WREFY ++A PS Sbjct: 181 ASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAWREFYADVLAGTPSSAR-TDLTD 239 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + +AWK G TG+PI+DA MRQL GW+HNR+RMI ASF+ KDL V Sbjct: 240 TLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLNVHR 299 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP QG++FDP G +IR W+ Sbjct: 300 THGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRKFDPAGEYIRRWV 359 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PEL +P +H P YP P+VDH L+++ A+ Sbjct: 360 PELRGLPPDAVHEPWKLPA--GPPNGYPRPVVDHAVERREALDRHARAR 406 >gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus corporis] Length = 506 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 120/493 (24%), Positives = 187/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L NS VF+ P + + F+ L + + Sbjct: 14 VHWFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 73 SLRKLNSRLFVIR----GQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMCKEL 128 Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S L + + + +I N+ V A L G T Sbjct: 129 GISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVTANLLEGSQT 188 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + Y ++ ++ GE AL L + + K + Sbjct: 189 PLSDDHDNKYGVPTLEELGFETDKLKPTVWSGGESEALARLERHLERKAWVASFGHPKMT 248 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R + +L E + + S +L+WREF+ Sbjct: 249 PQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKKIKKAM--PPLSLHGQLLWREFFYCA 306 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W++++ L W G TGFP IDA M QL GW+H+ R Sbjct: 307 ATKNPNFDKMNE-NPICVQIPWDENAQALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 424 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + ++PLP+V+H Sbjct: 425 FGRKADPNGDYIRKYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKDFPLPMVNHSIVS 484 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 485 KINIERMKQVYRQ 497 >gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827] Length = 421 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 218/468 (46%), Gaps = 52/468 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ D+ AL A +D + F+ P+ R ++ F++ L + Sbjct: 6 VVWFRRDLRVEDHPALLEAADRADRALAL-FVLDPKLLR--PSGKPRTDFLHRCLKSLDD 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G + D +E + + + + + RRD+ + Sbjct: 63 RL---GGRLMVVE----GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDE----AVGEE 111 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + PG + Y+V+TPF +A + + + + P + Sbjct: 112 VELVEAGSPYAVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADTDASTVDWIKPPRST 171 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + + +F E++ Y RDIP + GTS+ S +L Sbjct: 172 RPRAKALPDVAELWE---------------RFRDERLPDYHRTRDIPGVDGTSRFSAFLR 216 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+ PR + L + G+ + +EL WREFY ++ +P+ Sbjct: 217 WGVVHPRTLLDDLGQ---------DEGSKVFRSELAWREFYADVLWHHPASARHN-LDRR 266 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 ++IE ++D AW+QG TG+PI+DA MRQL GWMHNR+RMITASFLVKDL + W Sbjct: 267 FDRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLVKDLHLPWW 326 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +FM L+DGDLASN WQWAA +G D+ PYFR+FNP QG++FDP+G +IR ++P Sbjct: 327 WGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKGDYIRRYVP 386 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL +V + +H P PIVDH L+++ A K Sbjct: 387 ELRDVAGKAVHQPR-------------DPIVDHAHERQVALDRFAAIK 421 >gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1] gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1] Length = 550 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 180/549 (32%), Positives = 260/549 (47%), Gaps = 74/549 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGI 53 M + +S L+W R DLR+ DN AL A ++++ + AVF+ TP+QW H + Sbjct: 1 MSHSYKVS-ALMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDM 59 Query: 54 SARQSHFIYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 S Q + +L + + L GI Q ++ DSI+ ++++C+ +T + N +Y Sbjct: 60 SISQVDLMMRTLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEY 119 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E+NE +RD L KRL I + + PP +I +YKV+TPF K Q L Sbjct: 120 EVNEQQRDTALAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQI 179 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------------------ 207 + + ++ Sbjct: 180 SPPVLYDINSLTEGDIKQKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQR 239 Query: 208 ----------------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +P GEQ A+ L F ++ + Y RD PA+ GTSQL Sbjct: 240 FTSHYQLSKNNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQL 299 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA------------FSWLNELIWREFYRH 293 S YL++G++SPR C+ W++EL WR+FYRH Sbjct: 300 SAYLTLGIISPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRH 359 Query: 294 LMAFYPSVCMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + P + G + T+ W+ D+ +AW QG TG P+IDAAMR LN G+MHNR Sbjct: 360 VTVDRPDIVKGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNR 419 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 LRM+TA FL KDL +DWR+GE YFM L+DGD ASNNGGWQW+ASTG D+ PYFRI NP Sbjct: 420 LRMVTAMFLTKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPF 479 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKAC 467 Q K D FI+ WLPEL ++ +H + +NYPLP+++HK+A Sbjct: 480 SQAKTHDKDAIFIKSWLPELTDITANILHDENKLRKALSKQGAFAHVNYPLPMIEHKQAR 539 Query: 468 HHTLNQYYA 476 + + Q+ A Sbjct: 540 RYAIEQFKA 548 >gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC 7335] Length = 527 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 100/477 (20%), Positives = 182/477 (38%), Gaps = 28/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W + D R+ D++ L A V+ +++ P+ W S RQ F+ + + ++ Sbjct: 1 MWFKKDFRLFDHRCLTFAAQ--KGPVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + G D +E L +L+ +++ N + ++ + Sbjct: 59 LEELGGSMAI----ASGDVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + K + I +L ++ Sbjct: 115 GVAFHEPLQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDRT-------M 167 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQLSPYL 249 P I + P G AL +L F E+ Y P G S+LSPYL Sbjct: 168 PSPEVLGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGCSRLSPYL 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + G +S R+ + ++ ++ S++ L W + + P + Sbjct: 228 AYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKLELEPELE 287 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +T + + L+A+ +G TG+P +DA MR L GW++ R+R + SF Sbjct: 288 WLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRAMLMSFAS 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 DL + W+ + D + + Q +G + RI++P QG D +G Sbjct: 348 YDLWLPWQKSGDVLARLFTDYEPGIHWPQSQ--MQSGVTGINAIRIYSPIKQGLDQDIEG 405 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 TF R W+PEL +P + + P + L+YP PIV+HK+A ++ +A KK Sbjct: 406 TFTRQWVPELAALPDEILQTPWLLEGE----LSYPPPIVEHKEAAALAKSRLWAIKK 458 >gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis Och 149] Length = 466 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 220/475 (46%), Gaps = 25/475 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R DLR++D+ AL AA + + VI VFI + + A + + + ++ Sbjct: 2 VWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHDDQV---ETLGAAPKWRLGLGIDHLSET 57 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + ++E L + + +F+ R Y+ V RD L+ L+ Sbjct: 58 LEGLNSRLILRRGP----ALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 113 Query: 132 IC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLTG 186 I +SF ++ P ++ YKVYTPF + V A + A + Sbjct: 114 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPSSE 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ N+ D + P +GE A L F + V Y RD PA+ GTS LS Sbjct: 174 ALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSGLS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++G +SP QCW+ + GA ++L EL+WREF HLM P + Sbjct: 234 ENLALGEISPHQCWHAGLRARQEGK----PGAETFLKELVWREFAYHLMHHTPRILTDNW 289 Query: 307 FIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W ++ + + W+QG TG +DAAMR+L G MHNR RMI AS+L K L Sbjct: 290 KEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVASYLTKHL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD ++ Sbjct: 350 LSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRQYV 409 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + W+ + P++ Y P +W D YP P+V + L Y Sbjct: 410 KRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAYE 462 >gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis] Length = 648 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 118/493 (23%), Positives = 186/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P +S + F+ L + + Sbjct: 87 VHWFRKGLRLHDNPSLREGL-AGASTFRCVFVLDPWFAGSANVSINKWRFLLQCLEDLDR 145 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL Q + + L + T L + E RD+ + + Sbjct: 146 SLHQLNSRLFVIR----GQPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITTLCKEL 201 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + +I + + + V A + T Sbjct: 202 GITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACIGSAYT 261 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + ++ P++ GE AL L + + K + R Sbjct: 262 PLKDDHDDFFGVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFGRPKMT 321 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +L+WREF+ Sbjct: 322 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLADLYKKIKKTI--PPLSLHGQLLWREFFYCA 379 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+K+ L W G TGFP IDA M QL GW+H R Sbjct: 380 ATNNPNFDRM-HGNPICVQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQLAR 438 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 439 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMWLSCSSFF-QQFFHCYCPVR 497 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + K + Y LP+V+H K+ Sbjct: 498 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKSS 557 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 558 RINVERMKRVYQQ 570 >gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b] Length = 450 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 164/469 (34%), Positives = 233/469 (49%), Gaps = 24/469 (5%) Query: 11 LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R+D R+TDN L+ + VF P+ + + + ++++ Sbjct: 4 ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYCHPFEV---RHDYFFSTMRTF 60 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L KG+ + D ++ L + L++N +Y +RD + + L Sbjct: 61 MDDLEAKGLGLRVLVAETEDAFVKQLGE------MDVLYFNAEYVEPFKQRDDRVIEALS 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V D L P + + YKV+TPF+KA A + Sbjct: 115 EDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYAEQPPAPYEVDVNRLSQYIRSK 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + +GE A L +F +++ Y E+RDIP+I GTS+LSPY Sbjct: 175 NEQPSELKELFK-RCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGTSRLSPY 233 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L GVLS R ++ G ++ +EL+WREFY +MA + +PF Sbjct: 234 LRTGVLSIRTITEQVLSARQSK------GRDTYYDELLWREFYYMVMAKFHG-LKDQPFN 286 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + IEW + + W G TG+PI+DAAMRQLN GWMHNRLRMI ASFL K LL+D Sbjct: 287 DKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLSKHLLLD 346 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP GTFIR + Sbjct: 347 WRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDGTFIRKY 406 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +PEL +V + IH P +Y +P+VDHK+A L ++ A Sbjct: 407 VPELKHVSDKSIHFP-----DPSERDDYAMPLVDHKEARERALERFKAL 450 >gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 437 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 207/455 (45%), Gaps = 33/455 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W + DLRI DN+AL+ AC NS +VI VFI P + R++ F+ SL + K Sbjct: 6 IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + +KG D+ + + + +F NR + + ++ ++K + Sbjct: 65 EIEKKGGRLYCFH----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLNE 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + L + + K Y + + L V + R + Sbjct: 121 GVDFVTFNDNFLAEIDKIPYRKIYSKFYRYWEQNLRLTEVSSPERINTPKLNEPEIDIVA 180 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 S I + ++ +R+ + Y E RD I GTS+LSPY+ Sbjct: 181 SEISHEKNIVWK------------PDFGIRRLKEFDFNRYEELRDRLDIDGTSKLSPYIR 228 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G++S R+ + E ++ EL WREF+ H+ +P F Sbjct: 229 FGLISLRKIYRVASEAAGQ--------DCQFIKELAWREFWYHIKLNFPQF-KNLEFQEK 279 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 KI W D L +A+ + TG+P+IDAA+ QL WMHNR RMI ASFL KDL++DWR Sbjct: 280 RRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLTKDLMIDWR 339 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +FM L+D D N G WQW AS G D P RIFNP IQ K+FDP FI+ +LP Sbjct: 340 WGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDCKFIKKYLP 398 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 L +P+ +H P + Y PIV+H + Sbjct: 399 SLKKLPSFMLHDPLTHRLP------YHKPIVNHFE 427 >gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group] Length = 700 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128 SL + G + + D++ L T+LF+N Y+ + RD E Sbjct: 80 SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L +P Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495 Query: 471 LNQYYAA 477 L++ + Sbjct: 496 LSEMWQL 502 >gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040] Length = 474 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR+ DN AL A + +I ++I ++ + A + L + K Sbjct: 8 IWWIRRDLRLRDNPAL-RAAQEAGGPIIPLYIHD---AQEEALGAAPKFRLGLGLERFAK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L +KG + D++E L + + ++R Y+ +RD +++ L+ Sbjct: 64 TLEEKGSRLIVRR----GDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKAS 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185 I KS +L P ++ MY+VYTPF KA+ L A R + Sbjct: 120 DIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAPESWPSG 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE AL L F E+V Y RD PA TS+L Sbjct: 180 EALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATSEL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SP + W+ + D GA +L E++WREF HLM P + Sbjct: 240 SENLAWGEISPHRMWHLGAQAMQDGQ----PGAEHFLKEVVWREFAYHLMHRSPRILTRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + LQ W+QG TG+ +DAAMR+L G MHNR RMI ASFL K L Sbjct: 296 WREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++ W+ G ++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 356 MIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGDYA 415 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPE P + A P W D S PI+ K+ L+ Y ++ Q Sbjct: 416 RRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSR--VSPIIGLKEGRERALSAYKESRNQ 473 Query: 481 S 481 S Sbjct: 474 S 474 >gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo] Length = 530 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 122/492 (24%), Positives = 194/492 (39%), Gaps = 30/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R LR+ DN AL AA +S+ V V+I I A + HF+ SL ++ Sbjct: 6 IHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLR 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL Q G Q + + + + +T++ + + E + + + Sbjct: 65 SSLCQLGSCLLVIQ----GEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGEE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 S L IL + ++ L ++ + A Sbjct: 121 LGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDFQRCS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD------------- 235 P D P + +++ ++ R Sbjct: 181 PPELCLAECYRVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADRSGWVASFTKPKTVP 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + T+ LSPY S+G LS R + RL + S +L+WREF+ + + Sbjct: 241 NSLLPSTTGLSPYFSMGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTV 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P +I W +D+ L WK TGFP IDA M QL GW+H+ R Sbjct: 299 ASATPNFTKMAGNPICLQIRWYEDAERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P Sbjct: 359 AAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSAS-AFFHHYTRIFCPVRF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468 G+R DP+G +IR +LP L N P++YI+ P + ++ + +YP P+VDHK+A Sbjct: 418 GRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASD 477 Query: 469 HTLNQYYAAKKQ 480 H L +++ Sbjct: 478 HNLQLMKQVREE 489 >gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans] gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans] Length = 540 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 199/501 (39%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + E RV L + E + RD Sbjct: 66 QTLEDLDNQLRKLDSRLFVVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + + L Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + + + + P + FP GE AL + + K++++ Sbjct: 182 KKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R +N+ +E + K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFNQKLKEIIKRQPKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKENIKRMGAAYK 499 >gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group] gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group] gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group] Length = 700 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128 SL + G + + D++ L T+LF+N Y+ + RD E Sbjct: 80 SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G QNA L F + +Y R TS Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L +P Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495 Query: 471 LNQYYAA 477 L++ + Sbjct: 496 LSEMWQL 502 >gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group] gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group] Length = 693 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 220/487 (45%), Gaps = 25/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ PE+ + ++ SL + Sbjct: 14 VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 72 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQ 128 SL + G + + D++ L T+LF+N Y+ + RD E Sbjct: 73 SLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 129 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 130 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 189 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G QNA L F + +Y R TS Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L +P Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 309 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 310 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 368 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FD Sbjct: 369 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 428 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 429 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 488 Query: 471 LNQYYAA 477 L++ + Sbjct: 489 LSEMWQL 495 >gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 464 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 221/480 (46%), Gaps = 30/480 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R DLR+ DN AL+ A + I +FI Q I +++ Sbjct: 4 KIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQE----IGGASKLWLH----- 52 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 SLS + +E + + +T ++NR Y+ + RD +++ L Sbjct: 53 --HSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFL 110 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIR 183 Q + I S + L + P YKVYTPF + + S Sbjct: 111 QEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKL 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 T S +Q I + IGE + IL +F KV Y RD + TS Sbjct: 171 ETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDSTS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSPYL G +SP Q +N + L + ++ EL+WR+F + + +YP Sbjct: 231 KLSPYLHFGEISPNQIFNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LH 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 K + EW+ D+ LL+ W+ G TG PI+DA MR+L G+MHNR+RMI ASFL+K Sbjct: 285 NKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFLIK 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + L+ W+ GE++F L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ Sbjct: 345 NCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-E 403 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR ++PEL +P + + P L NYP P++D KK+ L + Sbjct: 404 YIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPLIDLKKSRDKALELHKKL 463 >gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Mucilaginibacter paludis DSM 18603] Length = 493 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 123/487 (25%), Positives = 205/487 (42%), Gaps = 32/487 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55 M T LVW RNDLRI DN+ L A +D KV+ VF ++ Sbjct: 9 MSEKTI----LVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGD 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ ++ ++K+L Q G D ++ + + V++++++R+ Sbjct: 64 FRTRFLLEAVADLRKTLQQHGAELIVRS----GDPVDIIPQLAEEYHVSEVYHHREVAFE 119 Query: 116 EVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E +E L + + K F + + V+T FRK + ++ Sbjct: 120 ETDISAKVEAVLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPC 179 Query: 175 R----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---LHILRKFCKEKV 227 ++ +P I G + F + + + G + + + + Sbjct: 180 FETPGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCL 239 Query: 228 YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R+ +S+ SP+LS+G LS RQ + +K + + + EL+ Sbjct: 240 KTYKTTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQERGAND--STYWLIFELL 297 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+++R + Y + + L + WK G TG P IDA MR+LN Sbjct: 298 WRDYFRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNAT 357 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R ASFLVKDL V+W G YF +L+D ASN G W + A GND Sbjct: 358 GFMSNRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPRE-N 416 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460 R N Q +DP+G +++ W+PEL +P + + P + K +L +NYP I Sbjct: 417 RHLNVIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKLI 476 Query: 461 VDHKKAC 467 ++ Sbjct: 477 INLAVTS 483 >gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9515] Length = 503 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 108/478 (22%), Positives = 187/478 (39%), Gaps = 31/478 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++++W + DLRI DN+AL + + D +I +FI E W Q S RQ F SLL Sbjct: 3 NINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLLD 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ SL+ G IE D + ++ +++ + ++ Sbjct: 61 LRISLANIGQPLIIRT----GKVIEIFDQISNNFEIKAIYSHQETGDYLTYKRDQEVRKW 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + L+ K + ++ L + P + Sbjct: 117 ASMKKIIWKEYLQFSVFRGKLDRNNWSTKW---------KKNMERKLFTEPSKINPIEID 167 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 FF + G + L + F K+ YY + P S+L Sbjct: 168 PGEIPPDNFFCFKDDFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISSPEKSFDSCSRL 227 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY+S G +S ++ + + + L W + + P + + Sbjct: 228 SPYISWGCISIKEIIH-------KANSITNPNSKMLKSRLTWHCHFIQKLESEPELEFKE 280 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + DSHLL+ W +G TGFP +DA MR LN GW++ R+R + SF +L Sbjct: 281 FHPYFQKIRKK--DSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMRAMLMSFASYNL 338 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ S+ LD + + Q A G S+ RI+NP QGK DP+G FI Sbjct: 339 WIPWQESGSELASKFLDYEPGIHWNQCQMQA--GTTSINVNRIYNPIKQGKDHDPKGNFI 396 Query: 426 RHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + W+PE+ N P ++H P K + Y PI++ + + + ++ Sbjct: 397 KKWVPEIQNYPENFVHEPWLMEKFNSKEYENSEYIKPIINLSETTKNARKRIQEITQR 454 >gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032] Length = 466 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 157/476 (32%), Positives = 237/476 (49%), Gaps = 25/476 (5%) Query: 19 RITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 R+ D+ AL A + K++A++ P + + + HF + +L K + Sbjct: 2 RLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMKMDLNNEHF-FQNLAYFVKEARKS 59 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 + DD + + +F+N RRDK + L+ + I S Sbjct: 60 QVYVHLLH----DDVLRAFQQVMDVYNINAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVS 115 Query: 136 FDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTGPVTP 190 L IL Y+V+TP+ ++ + Q D + ++ Sbjct: 116 TWQDTHLHGAQDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFSSGHMICDESLSQ 175 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + D IG + A++ L++F ++++ Y E+RDIP++ GTS+LS +L Sbjct: 176 KGNEKLRDLIKGCSRKFDQIGTEKAMNTLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFLK 235 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +S R ++ + + G +++ EL WR+FY + A YP + K Sbjct: 236 TGTISIRTIFH----AIYEEALYEDEGRETFIKELAWRDFYHMIYAHYPEM-KEKEINSA 290 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + + WN D L +AW +G TGFP++DA MRQLN GWMHNRLRM+TASFL KD L+DWR Sbjct: 291 FQGMRWNDDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWR 350 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE YF +L+D D ASN GG+QWAAS G D+VPYFRIFNP Q KRFDP G FIR ++P Sbjct: 351 KGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVP 410 Query: 431 ELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 EL ++ ++IH P L YPLP VDH++ ++ + AK+Q Sbjct: 411 ELEHIDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPTVDHQERRKKAISLFEEAKQQ 466 >gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311] Length = 492 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 151/495 (30%), Positives = 211/495 (42%), Gaps = 37/495 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66 L W R DLR+ DN L AA S A V V++ P + ++ + F+ SL Sbjct: 7 LFWHRRDLRLADNLGLQAAEAISPA-VTGVYVLDPALIQPPESLPPMAPARLWFLVESLR 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ G D ++ L + ++R E RD+ + K Sbjct: 66 ELQQRWRDVGSRLLV----VAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDRQVAKA 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ D LL ++ + V+ S P L Sbjct: 122 LQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPPRALID 181 Query: 187 PVTPS----------------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 + GE A L F Sbjct: 182 LEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRPGEAAAAAQLAAFAD 241 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLN 283 + Y R+ P + GTS LS LS+G +SPRQ W + + + + + W Sbjct: 242 GALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKEIARSDEQQQAITVWEQ 301 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREFY+ + +P + G P+ + W +S +AW++G TG PIIDAAMRQL Sbjct: 302 ELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDAAMRQL 360 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 N GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D Sbjct: 361 NQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 P RIFNP Q +FD +G +IR W+PEL +V T+ + S +YP +++H Sbjct: 421 P-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDL---ISGEIPALERRSYPEQLINH 476 Query: 464 KKACHHTLNQYYAAK 478 K Y + Sbjct: 477 KVQQAKFKALYATIR 491 >gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1] Length = 473 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 155/486 (31%), Positives = 228/486 (46%), Gaps = 28/486 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + L+W R DLR++D+ AL AA N+ VI VFI + A Sbjct: 1 MSDKSPI---LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---DALGAAPKWR 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + + + SL + D++E L + + ++++R Y+ + V+RD Sbjct: 54 LGLGIGALADSLEGVSSRLILRE----GDALEVLQALIKETGAGTVYWSRLYDPDSVKRD 109 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175 +++ L + I KSF V+ P ++ A YKVYTPF + ++ + A Sbjct: 110 SKIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSD 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + ++ D + P +GE+ A L F V Y + RD Sbjct: 170 LPAPESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRD 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 IP GTS LS LS+G +SP QCW+ + D GA ++L EL+WREF HLM Sbjct: 230 IPGTDGTSNLSENLSLGEISPHQCWHAAQRALHDGK----QGAETFLKELVWREFAYHLM 285 Query: 296 AFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + W ++ ++AWKQG TG P +DAAMR+L G MHNR R Sbjct: 286 HHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHH 469 +FD + W+ E P + A P SW D +YP I+ + Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRER 463 Query: 470 TLNQYY 475 L Y Sbjct: 464 ALETYK 469 >gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina Ar-4] Length = 433 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 137/469 (29%), Positives = 210/469 (44%), Gaps = 44/469 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQ 69 L R DLR+ DN L A D +V+ +FI P Q S F+ SLL++ Sbjct: 4 LFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLELD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G + E + ++ N Y +RD+ ++++++ Sbjct: 63 QDLKTMGSRLHLLK----GFPEEIIPKI----NADAVYMNEDYTPFSRQRDERIKEKVKG 114 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 +++ + +LL + Y V+T F + V+ + Sbjct: 115 KLV---TCEDLLLTKKRFFLKEGKPYSVFTRFYVDVKDKPVRRP---------EVNNLKN 162 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + D + R+ P + GT++LSPYL Sbjct: 163 YGEMKDITDVKLLENLHFQRSSFKGGRRAALDTLNRAQTIDYSLRNFPGLPGTTRLSPYL 222 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 GVLSPR+ + + EE +L WR+F+ L + P G + Sbjct: 223 KFGVLSPREVYYSVNEEIR--------------RQLYWRDFFTLLAYYNP-YVFGHAYKR 267 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + + W D++L AW QG TG+PI+DA MR+LN G+MHNR RMITA FLVK L VDW Sbjct: 268 EYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLHVDW 327 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE+YF ++L+D D + NNG WQW ASTG D + FRIFNP +Q K+FDP+ +I+ W+ Sbjct: 328 RWGEKYFATKLVDYDPSVNNGNWQWVASTGVDRM--FRIFNPWLQQKKFDPEAVYIKEWV 385 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PEL ++ IH ++ YP PIV++ + Y ++ Sbjct: 386 PELRDLSPADIHNVYALKVD-----GYPKPIVNYLEEVRKAREYYEKSR 429 >gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii] gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii AaR/Sc] Length = 478 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 150/486 (30%), Positives = 234/486 (48%), Gaps = 32/486 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66 ++WLR +LR+ DN++ AA NSD K++ +FI + R+ F+ +L Sbjct: 3 KTSIIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L + + IE + ++ ++ + YE + + RDK +++ Sbjct: 62 LINDELKKLKGKLLVFH----GNPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQEL 117 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182 L + D +L+ P +L + YKVYTP+ +A + N V A + L + Sbjct: 118 LGSNCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSY 177 Query: 183 RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCK----------EKVYYY 230 L G + + + IG L + ++ +Y Sbjct: 178 NLEGKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFY 237 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 RD GTS +SPYL G++S R+C+ + ++ G +W+NELIWREF Sbjct: 238 KTDRDFLYRNGTSTISPYLRFGLISIRECYRKAFNASLN------PGTVTWINELIWREF 291 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y ++ +P+ + + KI WN + TG+PIIDAA++QL + GWMH Sbjct: 292 YATILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMH 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR RMI ASF K+LL+DWR GEE+F L+D +LASN GGWQWA+S G D+ PYFRIFN Sbjct: 352 NRSRMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P QG+ FDP +I+ +LP L T IH ++ + NYP P+VD+ + Sbjct: 412 PYTQGQHFDPDAEYIKKYLPTLKKAQTHIIHN----INFYKMYDNYPKPMVDYVLSRAKA 467 Query: 471 LNQYYA 476 + + Sbjct: 468 IEVFKQ 473 >gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A] Length = 504 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 234/504 (46%), Gaps = 41/504 (8%) Query: 6 AMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIY 62 M+ + W R DLR DN L+ A NS + +I V++ P S ++ F+ Sbjct: 11 KMTKFQSIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLG 69 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SLL++QK+ +G + D IE + +++N E E+ RDK Sbjct: 70 ESLLELQKNWEIRGSLLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQ 125 Query: 123 LEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------- 173 + ++L ++ P I + + YKVY PF + I + + Sbjct: 126 IAEKLSKEKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQ 185 Query: 174 ------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 +++ + + + + ++ P P ++ Sbjct: 186 TSETAKKLTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESI 245 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KP 274 + + Y + RDIP+++ TS LS LS+G +S R WN + Sbjct: 246 KQLNSFIHSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYK 305 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + +W+ EL WREFY++ + +P + G P+ W +AW G TG P Sbjct: 306 INSIDTWIKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDWFEAWGDGLTGIP 364 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IIDAAMRQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW Sbjct: 365 IIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQW 424 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 +AS+G D P RIFNP Q +FD G +IR W+PEL+++ T + + + + Sbjct: 425 SASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN--- 480 Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478 +YP PI++HK Y K Sbjct: 481 SYPNPIINHKNQTSIFKELYSNIK 504 >gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 491 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 96/483 (19%), Positives = 177/483 (36%), Gaps = 22/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLR+ D++ L A + + KV+ ++ + S FI L ++ Sbjct: 1 MVVVWFKRDLRLEDHEPLTRAFASGE-KVLLLYSFESFWTQDPHYSDLHIDFIQEGLEEI 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L + D E L ++ + L+ + + ++ Sbjct: 60 QLKLKEYDTKILILS----DYIPEILKKIHSKEPIKALYSHMEAGMDITYTRDK----AV 111 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++ + K + + + + Sbjct: 112 KKWCTQNSIHWHEFAQNGLWRALKNRQKWRDHWISQMKAPIHIPSFLPTTYYTASEIDGL 171 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLS 246 + + + + G N L F +++ Y + P + ++S Sbjct: 172 SAALKLVPLELNITHKKGIQIGGSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGRIS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G+LS +Q + + K +F + L W+ + PS+ Sbjct: 232 PYLAWGMLSAKQVLQYVTRHQKQVSNKRNINSFL--SRLSWQAHFIQKFEMEPSIEFDAV 289 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + AW+QG TG P++DAAMR L G+++ RLR + ASF L Sbjct: 290 -NKGYAALNKTVIPAHQLAWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHLLW 348 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ + LD + + Q A G + RI+NP G DP+G FI+ Sbjct: 349 QPWQDCSPHLAQHFLDFEPGIHFPQLQMQA--GETGINTIRIYNPVKNGLDHDPKGIFIK 406 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +P Y+H P L +YP PI+D +K+ + +Q + +K Sbjct: 407 KWVPELALIPEVYVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLRKT 466 Query: 481 SLL 483 +L+ Sbjct: 467 NLV 469 >gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris] Length = 538 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 112/491 (22%), Positives = 191/491 (38%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L N +FI P + + F+ L + + Sbjct: 7 VHWFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLEDLDR 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD+ + + Sbjct: 66 SLMKLNSRLFVIR----GQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRGM 121 Query: 131 VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + L + + ++++ ++ L PV + + V+ Sbjct: 122 NITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVGDAVS 181 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + Y ++ ++ GE AL L + + K + + Sbjct: 182 PISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLERHLERKAWVASFGKPKMT 241 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R + +L + + + S +++WREF+ Sbjct: 242 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLNDLYRKIKKAV--PPLSLHGQVLWREFFYCA 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P ++ W+K+ L W G TGFP IDA M QL GW+H+ R Sbjct: 300 ATKNPNFDRM-IGNPICVQVPWDKNPEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 358 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVR 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N+PT+YIH P + + K + ++YPLP+++H Sbjct: 418 FGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVVS 477 Query: 468 HHTLNQYYAAK 478 H + + Sbjct: 478 KHNIERMKQVY 488 >gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae] gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae] Length = 539 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 196/498 (39%), Gaps = 36/498 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL ++ V +FI P + A + F+ +L Sbjct: 9 VHWFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + G + E RV L + E + RD ++K Sbjct: 69 HDLDQQLQKLGSRLFVVR----GKPAEVFPRIFKSWRVELLTFETDIEPYSLARDSAVQK 124 Query: 126 RLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNLVQA 172 + + S + + K+ P L + L + Sbjct: 125 LAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLDLPEKLKEK 184 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + P FP GE AL + + K++++ Sbjct: 185 VQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPLKFPGGETEALRRMEESLKDELWVARF 244 Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 ++ A T+ LSPYL G LS R +++ +E + K S + +++WR Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSSR-LFHQRLKEILKRQTKHSQPPVSLIGQMMWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY + A P+ + +I W + L+AW G TG+P IDA MRQL GW Sbjct: 304 EFYYTVAAAEPNFDRM-LGNVYCLQIPWEEHPDHLKAWTYGQTGYPFIDAIMRQLRQEGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G+ F LLD D A N G W W +++ YFR Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 +++P GK+ DPQG +IR ++PEL P I+ P L +YP IV Sbjct: 422 VYSPVAFGKKTDPQGNYIRKYVPELAKYPAGCIYEPWKASLSDQRAYGCVLGTDYPHRIV 481 Query: 462 DHKKACHHTLNQYYAAKK 479 H+ + + AA K Sbjct: 482 KHEVVHKENIKRMGAAYK 499 >gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus] Length = 501 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 110/491 (22%), Positives = 202/491 (41%), Gaps = 32/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR+ DN AL A + ++ + + +++ P+ ++ + + F++ SL Sbjct: 8 IHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDI--KNRVGCNRLRFLFQSLKN 65 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + +IE L + V L + + V++D+++E+ Sbjct: 66 LDTSLRKINTRLYVIK----GKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVIEEFC 121 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I + + + T + + + VQ + Sbjct: 122 EANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVSDECK 181 Query: 188 VTPSNIPRFFDYPFQAI--------DPMFPIGE----QNALHILRKFCKEKVYYYVEQRD 235 + + + + + +P GE + + K + + Sbjct: 182 ASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQWVCNFEKPKSSP 241 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 T+ LSPY+S G LS + +++LK+ + K S + +L+WRE + + Sbjct: 242 NSIEPSTTVLSPYISHGCLSAKLFYHKLKQV--ENGSKHTLPPVSLMGQLMWRE-FYYTA 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +I W K+ L+AW +G TG+P +DA MRQL GW+H+ R Sbjct: 299 GSGTENFDKMVGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + A FL + DL + W G + F LLD D + N G W W +++ Y+R+++P Sbjct: 359 MVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYK-YYRVYSPVAF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 GK+ D G +IR ++PEL P+++I+ P + YP IVDH K Sbjct: 418 GKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCIIGEGYPNRIVDHDKVHK 477 Query: 469 HTLNQYYAAKK 479 + + AA K Sbjct: 478 DNIQKMNAAYK 488 >gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803] Length = 492 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 156/498 (31%), Positives = 211/498 (42%), Gaps = 37/498 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYA 63 S L W R DLR+ DN L+AA A V V++ P + F+ Sbjct: 4 SRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFLVE 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+++Q+ G D ++ L + ++R E RD+ + Sbjct: 63 SLVELQQRWRDAGSRLLV----VAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERDRQV 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + LQ D LL +L Y+VY PF + + ++ ++ P Sbjct: 119 ARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAPTG 178 Query: 183 RLTGPVTPSN---------------------IPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + + R GE A L Sbjct: 179 LIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRPGEAAAAGQLAV 238 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFS 280 F + Y R+ P GTS LS LS+G +SPRQ W + + + Sbjct: 239 FADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWCAAQAAKDLARSDEQRQAIAV 298 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W EL WREFY+ + +P + G P+ + W + WK G TG PIIDAAM Sbjct: 299 WEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDAAM 357 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G Sbjct: 358 RQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGM 417 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D P RIFNP Q +FD G +IR W+PEL +V T+ + S YP P+ Sbjct: 418 DPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDL---LSGDIGALERRGYPEPL 473 Query: 461 VDHKKACHHTLNQYYAAK 478 V+HK Y K Sbjct: 474 VNHKIQQARFKALYATIK 491 >gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu 4113] Length = 454 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 132/474 (27%), Positives = 216/474 (45%), Gaps = 23/474 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS L +DLR++DN L A +++ +V+ +F+ + F+ +L Sbjct: 1 MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G + D++ + Q ++ RR++ L + Sbjct: 60 DLDAGLRERGGRLVVRR----GDAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115 Query: 127 LQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + PG + + V+TP+ +A + ++ L + ++ Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSV-P 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +G + P + GE +R + + + Y +++D A TS+ Sbjct: 175 SGLRSEPVAAVTSLAPGSPSPGLPEGGETAGRRRVRSWWRSGLADYADRQDDLAGDATSR 234 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LSP + +R ++ GA +++ +L WR+F+ ++A P Sbjct: 235 LSPYLHFGCLSPVELVHRARKAGGA-------GADAFVRQLAWRDFHHQVLAARPDAAHA 287 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W D + AWK G TG+P++DA MRQL GWMHNR R++ A FL K Sbjct: 288 DY---RPRGDRWRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAGFLTKT 344 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWRIG +F+ L+DGDLA+N WQWAA TG D+ P R+ NP Q +RFDP G + Sbjct: 345 LYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRP-NRVLNPLTQARRFDPDGAY 403 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +R W+PEL V +H P L+YP PIVD ++ L ++ A+ Sbjct: 404 VRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVDLQEG----LARFRDAR 453 >gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis] gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis] Length = 541 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 194/498 (38%), Gaps = 36/498 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL +++ A V +FI P + A + F+ SL Sbjct: 9 VHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGANRWRFLQQSL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + K L + + ++ + V L + E ++RD ++K Sbjct: 69 VDLDKKLKELNSRLYIVR----GKPVDVFPELFERWNVQLLTFESDIEPYALQRDTTVQK 124 Query: 126 RLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNLVQA 172 + S + + K+ P A+ + L Sbjct: 125 IASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKVLAVPEGLPDG 184 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + P + FP GE AL + ++ + Sbjct: 185 IKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRMEASLIDENWVAAF 244 Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 ++ A T+ LSPYL G LS R + +E + K S + +L+WR Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LLHERLKEILVRKPKHSKPPVSLVGQLLWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY + A P+ + +I W K L+AW G TG+P IDA MRQL GW Sbjct: 304 EFYYTVAAADPNFDRM-LGNAYCLQIPWQKQPDHLEAWTHGRTGYPFIDAIMRQLRQEGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G+ F LLD D A N G W W +++ YFR Sbjct: 363 IHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461 +++P GK+ DP G +IR ++PEL P I+ P L ++YP IV Sbjct: 422 VYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYEPWKATLSAQREYGCVLGVDYPHRIV 481 Query: 462 DHKKACHHTLNQYYAAKK 479 +H + + AA K Sbjct: 482 NHDIVHKENIKRMSAAYK 499 >gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans] Length = 633 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 148/488 (30%), Positives = 225/488 (46%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A + ++ V++ HG SA + F+Y L Sbjct: 149 HWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDFMYEGLKL 208 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + +C N D + + S+ +Q V+ +F N +YEI+E+RRD L K + Sbjct: 209 IQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTI 268 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++ PG++L + + K++TP+ KA + + P + Sbjct: 269 GDDIQVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLLDTNPPPAVNPA 328 Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 ++ FD P + I +P G A + + Y Sbjct: 329 SAKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAA-STRMDKFLKHIPNYAA 387 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWR 288 R P+ TS+LSPY S G+ S R ++ + +S G ++W+ E+++R Sbjct: 388 TRSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAASAGVYAWVREIVFR 447 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + W + QAW G TG P +DA MRQL W Sbjct: 448 ELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEAW 507 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL +N GW+ P + + Sbjct: 508 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYTV 557 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467 FNPT Q ++ DP G FIR W+PEL NV + + APH L + L YP P VD ++ Sbjct: 558 FNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQTK 617 Query: 468 HHTLNQYY 475 L+++ Sbjct: 618 ERCLSRFK 625 >gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037] Length = 456 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 32/477 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R+DLR+TDN AL AA + ++A+++ E I +++ SL Sbjct: 3 SPSVVWFRDDLRLTDNPALRAALDR-EEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L ++G + + + + +F+NR+Y E D ++++L Sbjct: 62 LGERLEERGGRLVLRRGRAAEVV----PAVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + L P ++ A + Y VY+PF +A+ + G Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARAVQKLPAPRPPMPEARKVPGFDG 177 Query: 187 -----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ + + GE L++F + + Y + RD A Sbjct: 178 HVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGA 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LSP L G LSP + W+ + A +L+EL+WREF H+ P + Sbjct: 238 TSNLSPRLRWGELSPYEVWHETIAH--RGSGEHAQSASGFLSELVWREFAWHVTYHSPDI 295 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + L+ W+QG TG ++DA MRQL G MHNR+RM+TASFL Sbjct: 296 ATVNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTASFL 355 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +K+LL+DWR GE++F L+D D ASN WQW A +G D+ PYFR+FNP Q K+FDP Sbjct: 356 IKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFDPH 415 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++R W PE L N P P+VD + L+ Y + Sbjct: 416 DAYVREWAPEY-------------------LGENPPEPMVDLGETRKRALDAYAEVR 453 >gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 475 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 189/473 (39%), Positives = 273/473 (57%), Gaps = 10/473 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +L+W R DLR+ DN ALY AC + + I ++W + +S + F+Y ++ Sbjct: 1 MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L + GI ++ C +F + L ++C +V +L++N+ E ++ DK++ K+ Sbjct: 61 SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L+ C F+ ++L+ P I N + YKVY+ F K+ I + ++ +P P IR Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIRKNK 180 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P E++AL+ L F K K+ Y RD I TS LS Sbjct: 181 LNLIKSYNDSIKIKKKLS----PCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PY++IGVLS R+C N +K D + K SG F W +E+IWREF HL+ Y K Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 I WT+ I+W +QAWK G TGFPIIDAAMRQL GWMHNRLRMIT+SFLVKDLL Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDW+IGE+YF L+DG+ A NN WQW +S+G S PYFR+ NP Q K+F +I+ Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PEL N+P IH P++W+ KN + NYP I++HK A +N + A KK Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKNKI--NYPNQIIEHKTAK---INFFKACKK 463 >gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 440 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 136/480 (28%), Positives = 208/480 (43%), Gaps = 45/480 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M V++ W R D+R+ DN A SD V+ +FI E + F Sbjct: 1 MSKK----VNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTF 55 Query: 61 IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 IY L +++ +L + + + + V +F NR YE R Sbjct: 56 IYEELQRMRNNLQENHDSSL----ATFYGKPLNIWQEIIDNYEVNAVFTNRDYEPYAQER 111 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D L + + +F D V+ I+ Y VYTP++ ++N + ++ Sbjct: 112 DLKLTSFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADN 171 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237 + + + + + Y + R+ P Sbjct: 172 LTIHYTNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIP---EYNITPTLIEDYEKTRNYPA 228 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 GTS+L YL GV+S R+ + ++++ELIWREF+ ++ Sbjct: 229 MENGTSRLGVYLRFGVVSIRKMMKKADLANEK----------TFMSELIWREFFMTILYH 278 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P + F ++IEW + + WK G TG+ I+DA MR+LNT G+MHNR+RM+ Sbjct: 279 FPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRMLV 337 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K LL+DWR GE YF +LLD DL++N G WQWAA +G D+ PYFRIFNP Q + Sbjct: 338 ASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKDK 397 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FD +I+ W+PE + +Y +VDHK+A L Y A Sbjct: 398 FDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKEA 438 >gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14] Length = 491 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 107/486 (22%), Positives = 187/486 (38%), Gaps = 25/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+TD++AL A +N D V+ ++I P S R FI+ SL Sbjct: 3 KINVVWLKRDLRLTDHQALSVAANN-DYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLED 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ +++E LD + LF +++ + L K Sbjct: 62 MNHQLACVNSQVFIFH----GNAVECLDKLMHHCPINALFSHQEIGLGCTFERDLNIKAW 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + N R + + P Sbjct: 118 CDKQQIQWHEFQQGAVIRGAKNRTNWDKHWNRVMRAPVFSVNLDKVNWVGTCPEQLAYML 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 +P + + M G AL L F + Y P T+ L Sbjct: 178 FSPPES------WRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRL 231 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S RQ + ++ + + ++ + L W + P + Sbjct: 232 SPYLAWGNISLRQVYQQVLAHWNVKG--FRRSLIAFSSRLHWHCHFIQKFESEPDIEFYC 289 Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + + AWK+G TG P+IDA MR L G+++ R+R + SFL Sbjct: 290 MNRTYDRLLAESCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTH 349 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L +DWR G + LD + + +Q A G + RI+NPT Q + DP G Sbjct: 350 HLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEHDPDGE 407 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL N+P + P + + + + Y PI+D +++ + + + Sbjct: 408 FIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSCYLYPIIDLERSAKNARERLWGW 467 Query: 478 KKQSLL 483 K + + Sbjct: 468 KARKDV 473 >gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris] gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris] Length = 487 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 126/478 (26%), Positives = 217/478 (45%), Gaps = 24/478 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VWLR DLR+ DN AL A +A V+ VF+ PE+ Q ++ SL Q Sbjct: 4 STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + S+ S++ L + + +++F+N Y+ + RD+ +++ L Sbjct: 63 LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I ++ L P + + + + + + F + + LP L Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLPPTRSLLAF 179 Query: 187 PVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + G NA L F + + Y + + Sbjct: 180 AGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMVD 239 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 TS LSP+L G LS R+ + ++ + + + +L + R++ R++ Sbjct: 240 GSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRYI 299 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 +P + + W D L +AW+QG TG+P++DA MRQ+ GW+HNR+R Sbjct: 300 CFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRIR 358 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 +I +SF VK L + W G +YF LLD DL ++ GWQ+ + D R+ + I+ Sbjct: 359 VIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQIE 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466 G ++DP+G ++R WLPEL+ +PT++IH P + +L NYP P+V+ A Sbjct: 419 GYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476 >gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB 400] gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina NCIMB 400] Length = 504 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 99/496 (19%), Positives = 191/496 (38%), Gaps = 30/496 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T ++++VW + DLR++D++ L A N D + ++ P + R F Sbjct: 1 MPDTIKQAINIVWFKRDLRLSDHQPLVDAF-NHDLPCLLIYTFEPFMLADSHYNERHWRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + + L + I+ LD + ++ +++ ++ Sbjct: 60 VWQSLQDMNQQLLRFNGQVYMFSMP----MIDLLDEISQTFEIKNIYSHQEIGLHNSFER 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 R + P G+++ +++ + + + + + Sbjct: 116 DKTV----ARWCNQQPVSWQQSPTGAVVRGRKNRQAWDQHWQQVMNSPIAIPNWQQCQLQ 171 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-- 238 + P + D G + A IL F + Y P+ Sbjct: 172 KL------DNYQEPTLDNAIMAHNDQFQIGGPKAARTILSSFLTHRGKDYQRSISSPSLS 225 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G +S +Q + + ++ K+ L + ++ H M + Sbjct: 226 RTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHFMQKF 285 Query: 299 PSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 S C + +++ +Q W G TG PIIDA MR L G+++ R+ Sbjct: 286 ESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYINFRM 345 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + SF+ L + W+ + LD + + Q AS + R++NP Sbjct: 346 RAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQAS--VTGINTIRLYNPVK 403 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKAC 467 Q + DP+G FIR W PEL N+P +YIH P + +YP P++D +A Sbjct: 404 QSQDQDPRGEFIRLWCPELTNLPNEYIHQPWQQPPMEAIFNDIILGRDYPEPMIDLTQAS 463 Query: 468 HHTLNQYYAAKKQSLL 483 ++ ++ ++Q + Sbjct: 464 QTARDRLWSYREQPQV 479 >gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae KM-6054] Length = 441 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 142/455 (31%), Positives = 216/455 (47%), Gaps = 29/455 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ +V DLR+ DN AL+AA +D +V+ +F+ P + + F+ L Sbjct: 1 MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + G + D+ E + T + RR++ L + Sbjct: 60 ELDAALRRTGSRLTVRE----GDTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L R + +PPG++ Y V+TP+ +A Q +A L + A+R Sbjct: 116 LGER-LHVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRAPLPAPR--ALRTPD 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + +P + DP R + Y + D A TS LS Sbjct: 173 DLPSAPLPTATPTARRLPDPGEAA-------ARRTWQHWHADDYADLHDALADDATSHLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS + + ++ +GA ++ +L+WR+F+ ++A P+ Sbjct: 226 PYLHFGCLSANELAHLAEQRGG-------TGAEAFARQLVWRDFHHQVLAARPAAAHSDY 278 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + W+ D AW+ G TGFP+IDAAMRQL GWMHNR R++TASFL K L Sbjct: 279 ---RPRPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKSLH 335 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWR G +F+ L+DGDLA+N WQW A TG D+ P R+ NP +Q R DP+GT++R Sbjct: 336 HDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRP-NRVLNPLVQADRHDPEGTYVR 394 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 WLPEL ++PTQ IH P L +YP PI+ Sbjct: 395 RWLPELAHLPTQDIHRPWQSLLC---PADYPDPII 426 >gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 493 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 157/495 (31%), Positives = 213/495 (43%), Gaps = 37/495 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHFIYASLL 66 L W R DLR+ DN L AA A V V + P + F+ SL+ Sbjct: 7 LFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ + G D L + ++R E RD+ + + Sbjct: 66 ELQQRWREAGSRLLV----VAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAVARA 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 LQ D LL +L Y+VY PF + + +++ ++ P+ + Sbjct: 122 LQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSGLID 181 Query: 186 GPVT---------------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 R GE A L F Sbjct: 182 LEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRPGEAAAAEQLATFVA 241 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLN 283 + Y R++P++ GTS LS LS+G LSPRQ W +E + + W Sbjct: 242 GPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAITVWEQ 301 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREFY+ + +P + G P+ P + W + WK G TG PIIDAAMRQL Sbjct: 302 ELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAAMRQL 360 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 N GWMHNR RMI AS+LVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D Sbjct: 361 NQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 P RIFNP Q +FD +G +IR WLPEL +V T + S YP P+V+H Sbjct: 421 P-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDL---LSGEIPALERRGYPEPLVNH 476 Query: 464 KKACHHTLNQYYAAK 478 K Y + Sbjct: 477 KSQQARFKALYATIR 491 >gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis] Length = 625 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 115/526 (21%), Positives = 199/526 (37%), Gaps = 60/526 (11%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------ 59 M +H + W R LR+ DN +L + +D+ V V+I P + + Sbjct: 1 MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59 Query: 60 -----------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 F+ SL + SL + + + ++ Sbjct: 60 LTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIR----GQPTDVFPRLFKAHPTVAVYV 115 Query: 109 NRQYEINEVRRDKLLEKRLQHRV------------ICKSFDDSVLLPPGSILNHALQMYK 156 +++ I+ + + E + R L I+ Sbjct: 116 PQEWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLDKIIELNGGQSP 175 Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---------- 206 + + LI + ++ + + A + TP + Y +++ Sbjct: 176 LTYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSS 235 Query: 207 -MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWN 261 ++P GE AL L + + K + +R + LSPYL G LS R + Sbjct: 236 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 295 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 +L + + + S +L+WREF+ P + P +I W+++ Sbjct: 296 KLTDLYRKVKKNSSPPL-SLYGQLLWREFFYTAATNNPCFDKMEN-NPICVQIPWDRNPE 353 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380 L W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F L Sbjct: 354 ALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELL 413 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD D + N G W W + + +F + P G+R DP G +IR +LP L P +YI Sbjct: 414 LDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYI 472 Query: 441 HAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + P + + K + ++YP P+V+H +A + + +Q Sbjct: 473 YDPWNAPESVQKAAKCLIGVHYPKPMVNHAEASRLNIERMKQIYQQ 518 >gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 471 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 209/474 (44%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 I + + P + Y+VYTPF KA+ V R ++ Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + GA +L EL WREF HL+ P + Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFLAEIARRPGPEALAFLEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466 >gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. NATL2A] Length = 493 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 152/498 (30%), Positives = 230/498 (46%), Gaps = 39/498 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68 + W R DLR DN L+ A NS + +I V++ P+ S ++ F+ SL+++ Sbjct: 6 SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIEL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 QK+ +G D IE + +++N E E+ RDK + ++L Sbjct: 65 QKNWEIRGSRLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 120 Query: 129 HRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------------- 173 ++ P +I + + YKVY PF + I + Sbjct: 121 KEKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAK 180 Query: 174 ------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 +++ + + + + + P P ++ + Sbjct: 181 QLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSF 240 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFS 280 + Y + RDIP+++ TS LS LS+G +S R WN + + + Sbjct: 241 IHSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINSIDT 300 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 W+ EL WREFY++ + +P + G P+ W +AW G TG PIIDAAM Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDWFEAWGDGLTGIPIIDAAM 359 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQL GWMHNR RMI ASFLVKDLL+DWR+GE +FM L+DGDLA+NNGGWQW+AS+G Sbjct: 360 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 419 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D P RIFNP Q +FD G +IR W+PEL+++ T + + + + +YP PI Sbjct: 420 DPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPKPI 475 Query: 461 VDHKKACHHTLNQYYAAK 478 + HK Y K Sbjct: 476 ISHKNQTSIFKELYSNIK 493 >gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH Length = 488 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 123/497 (24%), Positives = 195/497 (39%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 1 MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L ++ L G L + + ++ + E + Sbjct: 59 IENLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAE 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174 +++ I L L + ++ + L + Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231 +P G + P G QNA + Y Sbjct: 175 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + + + EL+WR++ Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNK--STYWMIFELLWRDY 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + + +W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 293 FRWISRKHGATLFRAGGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 470 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 471 DSAKENETIYMRAKAAS 487 >gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus] Length = 525 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 117/500 (23%), Positives = 184/500 (36%), Gaps = 37/500 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + VF+ P + + F+ L + Sbjct: 26 VHWFRKGLRLHDNPSLKEGL-AGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLDC 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + T L + E RD + + Sbjct: 85 SLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCKEL 140 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+ + + ++ ++ + V A + T Sbjct: 141 GISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASMNPPEPPVSTVTAACIGNAYT 200 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P Y ++ P++ GE AL L + + K + R Sbjct: 201 PLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMT 260 Query: 239 I----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNELIW 287 + LSPYL G LS R + +L + + + S +L+W Sbjct: 261 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLLW 320 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ + A S P +I W+K+ L W G TGFP IDA M QL G Sbjct: 321 REFF-YCAATKNSNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEG 379 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 W+H+ R A FL + DL + W G + F LLD D + N G W W + + +F Sbjct: 380 WIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFF-QQFF 438 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 + P G++ DP G +IR +LP L N PT+YIH P + K + Y LP+ Sbjct: 439 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCVIGKEYSLPM 498 Query: 461 VDHKKACHHTLNQYYAAKKQ 480 V+H K + + +Q Sbjct: 499 VNHNKTSRINIERMKQVYQQ 518 >gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)] Length = 566 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 177/553 (32%), Positives = 255/553 (46%), Gaps = 88/553 (15%) Query: 11 LVWLRNDLRITDNKALYA--------------------------ACH-----NSDAKVIA 39 L+W R DLR+ DN AL A ++ K+ A Sbjct: 13 LMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPKIHA 72 Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYC 98 +F+ T EQW +H +S Q FI+ +L + SL +Q I + ++FD IE + ++C Sbjct: 73 LFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVANFC 132 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL-PPGSILNHALQMYKV 157 Q +T + N +YE+NE++RD +E+RL+ + I S + PP ++ + MYKV Sbjct: 133 QQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETMYKV 192 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN------------------------- 192 +TPF K L + + P Sbjct: 193 FTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLRLFSKAYFET 252 Query: 193 ---IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + + F GE A L+ F E V Y RD P+++ TS+LS YL Sbjct: 253 ESVNQDHQAQLLKNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEATSRLSAYL 312 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKP---------------------KSGAFSWLNELIWR 288 ++G +SPR C+ + K+ + + W++EL WR Sbjct: 313 TVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQRWISELAWR 372 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIG 347 +FYRH++A P + G F + W QG TG P+IDAAMR LN G Sbjct: 373 DFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAAMRCLNQTG 432 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G D+ PYFR Sbjct: 433 FMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVGTDAAPYFR 492 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVD 462 I NP Q K D + FI+ WLPEL V +H +++YP P+V+ Sbjct: 493 IMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANVDYPQPMVE 552 Query: 463 HKKACHHTLNQYY 475 HK+A + + Q+ Sbjct: 553 HKQARLYAIGQFK 565 >gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37] Length = 517 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 104/485 (21%), Positives = 178/485 (36%), Gaps = 30/485 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V++VWL+ DLR++D++ L + + + ++ P R FI+ S+ + Sbjct: 16 VNIVWLKRDLRLSDHQPLSESIQS--GLTLLYYVFEPLLIADPHYDKRHWRFIWQSIEDI 73 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 LS + F D++ L+ + +T LF + + + + Sbjct: 74 NTQLSAFNAQIYVY----FGDAVAGLNEIQQRFNITGLFSHEEVGLLSTFERDKAVNKWC 129 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + N + L Q + + RL + Sbjct: 130 KAQNIVWHESASGAVTRGKKNRNNWDKDWRKIMKAELCQPALSCNTLLSKQCLERLPQFI 189 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLS 246 P + D M GE A +L+ F + Y P S+LS Sbjct: 190 LPVSWSTP-------DDFMLKGGELWAQKMLQSFLNGRGKNYHFDISKPQASRKSCSRLS 242 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +S RQ + + + K + + L W + + Sbjct: 243 PYLAWGNISLRQFYQIILMKRPQ--NGWKRPIDALASRLHWHCHFIQKFESEHQMQWRPV 300 Query: 307 FIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 ++ + L WK TG+P++DA M L G+++ R+R + SFL Sbjct: 301 NRAYSNFSYPDLHCGLSVETRLNKWKTAQTGYPLVDACMLCLIKTGYINFRMRAMLVSFL 360 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 LL+DWR+G Y LD + + Q+ +G R++NP Q D Sbjct: 361 CHHLLLDWRLGVSYLAKLFLDFEPGIHYP--QFQMQSGVTGTNIIRVYNPVKQSLEKDKD 418 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 G FIR WLP+L+ +P + IH P L + L YPLPIVD + + + Sbjct: 419 GLFIRTWLPQLSELPNEIIHTPWQLSPMEQQLYQCQLGETYPLPIVDINETGKIARDLLW 478 Query: 476 AAKKQ 480 +K+ Sbjct: 479 GFRKR 483 >gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1] gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1] Length = 526 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 123/497 (24%), Positives = 195/497 (39%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 39 MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 96 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L ++ L G L + + ++ + E + Sbjct: 97 IENLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAE 152 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174 +++ I L L + ++ + L + Sbjct: 153 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 212 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231 +P G + P G QNA + Y Sbjct: 213 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 272 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + + + EL+WR++ Sbjct: 273 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNK--STYWMIFELLWRDY 330 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + + +W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 331 FRWISRKHGATLFRAGGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 389 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 390 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 448 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 449 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 508 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 509 DSAKENETIYMRAKAAS 525 >gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba] Length = 545 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 187/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN L A + +FI P + + F+ L + Sbjct: 10 VHWFRKGLRLHDNPTLKAGLKGA-TTFRGIFIIDPWFAGSSNVGINKWRFLLQCLEDLDT 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + L T L + + E RD + + Sbjct: 69 TLRKLNGRLFVVR----GQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I++ + + ++ + L + PV + T Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184 Query: 190 PSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + Y ++ ++ GE AL L + K + R Sbjct: 185 PIDEDHDEKYGVPTLEELGFETENLAPSIWKGGESEALARLEHHLERKAWVASFGRPKMT 244 Query: 239 ----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS R+ + L + + + P S +L+WREFY Sbjct: 245 PQSLYPSRTGLSPYLRFGCLSARRFFAELNDLYRKIKKSP--APLSLHGQLLWREFYYTA 302 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + P +I W+K++ L W G TGFP IDA M QL GW+HN R Sbjct: 303 ATNNPKFDHME-GNPICVQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVAR 361 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G + F LLD D + N G W W + + +F + P Sbjct: 362 HAVACFLTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVR 420 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G +IR +LP L N PT+YIH P + + K + +YP+P+VDH K Sbjct: 421 YGRKADPNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQS 480 Query: 468 HHTLNQYYAAKKQ 480 L + +Q Sbjct: 481 QANLMRMKQVYQQ 493 >gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 492 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 153/495 (30%), Positives = 207/495 (41%), Gaps = 37/495 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFIYASLL 66 L W R DLR+ DN L AA A V V++ P + ++ + F+ SL+ Sbjct: 7 LFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFLVESLI 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++Q+ + G Q D + L + + ++R E RD+ + K Sbjct: 66 ELQERWREAGSRLLVLQ----GDPLTLLPQLAALLDSSTVVWSRDVEPYARERDRGVAKA 121 Query: 127 LQHRVICKSFDDSV--------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 LQ D G + + + L + V A Sbjct: 122 LQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTVAAPTDLQD 181 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQ--------------AIDPMFPIGEQNALHILRKFCK 224 + A + + Q GE A+ L F Sbjct: 182 LTAEQQQAIRSTETALGRLWADGQQALQRLQTEHGFAGMDLCPCRPGEVAAVDQLAVFAD 241 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLN 283 + Y R+ P GTS LS LS+G LSPRQ W + + + W Sbjct: 242 GPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWCAAQAAKDLARSDEQRQAIAVWEQ 301 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WREFY+ + +P + G P+ + W + WK G TG PIIDAAMRQL Sbjct: 302 ELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDAAMRQL 360 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWMHNR RMI ASFLVKDL+ DWR GE FM +DGDLA+NNGGWQW+AS+G D Sbjct: 361 QQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPK 420 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 P RIFNP Q +FD G +IR W+PEL +V T+ + S YP P+V+H Sbjct: 421 P-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDL---LSGEIGALERRGYPEPLVNH 476 Query: 464 KKACHHTLNQYYAAK 478 K Y K Sbjct: 477 KIQQAKFKVLYATIK 491 >gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi] gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi] Length = 538 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 118/492 (23%), Positives = 190/492 (38%), Gaps = 30/492 (6%) Query: 11 LVWLRNDLRITDNKALY---AACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL+ + K V +FI P + A + F+ SL Sbjct: 9 VHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGANRWRFLQQSL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + ++ + +V L Y E V RD +++ Sbjct: 69 SDLDQQLRALNTRLFVVR----GKPVDIFPGLFERWQVQLLTYETDIEPYAVLRDAAVQQ 124 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLP 178 + + S + ++ T + L + L + Sbjct: 125 LAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKVLNKPKKLPDG 184 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR----KFCKEKVYYYVEQR 234 + + + + + P FP GE AL + + + Sbjct: 185 MQPLADSDIYDYPTLEQLVKRPEDLGINKFPGGESEALRRMEASLADEQWVAKFEKPKTA 244 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 T+ LSPYL G LS R ++ +E + K S + +L+WREFY + Sbjct: 245 PNSLEPSTTVLSPYLKFGCLSAR-LFHERLQEILARQPKHSKPPVSLVGQLLWREFYYTV 303 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 A P+ + +I W + L+AW G TG+P IDA MRQL GW+H+ R Sbjct: 304 AAAEPNFDRM-LGNAYCLQIPWQEQPEHLEAWAHGRTGYPFIDAIMRQLRQEGWIHHLAR 362 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G+ F LLD D A N G W W +++ YFR+++P Sbjct: 363 HAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVA 421 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 GK+ DP+G +I+ ++PEL P + I+ P L +YP IV+H Sbjct: 422 FGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLGEQRDYGCVLGSDYPHRIVNHDVVH 481 Query: 468 HHTLNQYYAAKK 479 + + A K Sbjct: 482 KENIKRMSDAYK 493 >gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba] gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba] Length = 540 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 124/501 (24%), Positives = 193/501 (38%), Gaps = 36/501 (7%) Query: 8 SVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIY 62 S + W R LR+ DN AL A + + K V +FI P + A + F+ Sbjct: 6 STLVHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQ 65 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +L + L + + + RV L + E + RD Sbjct: 66 QTLEDLDNQLRKLNSRLFVVR----GKPADVFPRIFKSWRVEILSFETDIEPYSMTRDAA 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGS-------------ILNHALQMYKVYTPFRKALIQNL 169 ++K + + S + + ++ P + L Sbjct: 122 VQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGSPEKL 181 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + P + FP GE AL + K++++ Sbjct: 182 TNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKDEIWV 241 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ A T+ LSPYL G LS R + +L E K S + +L Sbjct: 242 ARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTEII-KRQSKHSQPPVSLIGQL 300 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREFY + A P+ + +I W + L+AW G TG+P IDA MRQL Sbjct: 301 MWREFYYTVAAAEPNFDRM-LGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQ 359 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G+ F LLD D A N G W W +++ Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFYQ- 418 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 YFR+++P GK+ DPQG +IR ++PEL+ P+ I+ P L +YP Sbjct: 419 YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYPH 478 Query: 459 PIVDHKKACHHTLNQYYAAKK 479 IV H+ + + AA K Sbjct: 479 RIVKHEVVHKDNIKRMGAAYK 499 >gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus] gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus] Length = 789 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 104/477 (21%), Positives = 170/477 (35%), Gaps = 44/477 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN AL ++ A + VF+ P + + F+ L + + Sbjct: 53 VHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 111 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L Q + + L + T L + E RD + + + Sbjct: 112 NLRQLNSRLFVIR----GQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 167 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I S L + T + I + A + PAI L Sbjct: 168 NIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPE--PAITLAAIGRA 225 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + +G + ++ Sbjct: 226 VTPQCDDHDDKYGVPTLEELGFETEGLKPPI--------------------------WVG 259 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 + + L+ + + S +L WREF+ P+ P Sbjct: 260 GETEALARLERHLERKAWKIKK--AYPPLSLHGQLFWREFFYCAATKNPNFDKM-AGNPI 316 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369 +I W++++ L W G TGFP IDA M QL GW+H+ R A FL + DL + W Sbjct: 317 CVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISW 376 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + F LLD D + N G W W + + +F + P G++ DP G +IR +L Sbjct: 377 EEGMKVFEELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKADPNGDYIRRYL 435 Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P L N PT+YIH P + + + + NYPLP+V+H A + + +Q Sbjct: 436 PVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQVYQQ 492 >gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 488 Score = 257 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 124/497 (24%), Positives = 193/497 (38%), Gaps = 32/497 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61 M+ LVW RNDLR D++ A + AV P Q+ ++ F+ Sbjct: 1 MANALVWYRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL ++ L G L + + ++ + E + Sbjct: 59 IESLTDLRSRLRSLGGELIVR----VGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAE 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFRKALIQNLVQADL 174 +++ I L L + ++ + L + Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIR 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YV 231 +P G + P G QNA + Y Sbjct: 175 IQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234 Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +S+ SP+L+ G LSPR + ++ + + + EL+WR++ Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVR--CYEEERVENKSTYWMIFELLWRDY 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +R + + + +W D L + W+ G TG+P++DA MR+L T G+M Sbjct: 293 FRWISRKHGVTLFRTSGLRGVNV-DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFL K+L +DWR G +F SQL+D D+ASN G W +AA GND+ FR FN Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 T Q + +D QG + +HWLPEL ++ IH P + L YP PIVD Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKEYPHPIVDLF 470 Query: 465 KACHHTLNQYYAAKKQS 481 + Y AK S Sbjct: 471 DSAKENETTYMRAKAAS 487 >gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 471 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 210/474 (44%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E + RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119 Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 I + + P + Y+VYTPF KA+ V R L ++ Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLLSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + GA +L EL WREF HL+ P + Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQELAWREFGWHLLYHTPEIARRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + +L E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFLAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPRPVVGLAEGRERALAAY 466 >gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 492 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 215/506 (42%), Gaps = 58/506 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI +Q R G +AR + Sbjct: 17 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAAR--WW 70 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 71 RDRSLTLLVDALATHGVPLLRRS----GDPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L+ + S +L P + + A YKVYTPF KA ++ R Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQ 233 +LTGP TP D P + + Y + Sbjct: 187 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 246 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP+L G +S + W + I A + EL+WR+F H Sbjct: 247 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATD-AQVFRKELLWRDFAWH 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------------------AWKQGYTG 332 + P + + + + AW+ G TG Sbjct: 306 RLYALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTG 365 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D ASN W Sbjct: 366 IPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNW 425 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 426 QWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------- 466 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 467 TPEYPAPIVDLKESRREALDAYEAVK 492 >gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group] gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group] Length = 719 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 216/499 (43%), Gaps = 39/499 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ V++ PE+ + ++ SL + Sbjct: 21 VVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + + D++ L T LF+N Y + ++ Sbjct: 80 SLRRLGASRLVTRRSA---DAVVALIELVRSIGATHLFFNHLYGSIDPEFQIDPLSLVRD 136 Query: 130 RVIC----------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + +SF+ +L P +++ + ++ PF + + L Sbjct: 137 HRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCL--CMPDPAAPLLP 194 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYV 231 P G + P + + G QNA L F + Y Sbjct: 195 PKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYS 254 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIW 287 R TS LSPYL G LS R+ +++++ + + +L + Sbjct: 255 VNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGL 314 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +P + KP + W D + W+QG TG+P++DA MR+L G Sbjct: 315 REYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATG 373 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R Sbjct: 374 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR 433 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 I NP ++G +FDP G ++R WLPEL +PT++IH P + +L NYPLPIV Sbjct: 434 IDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIV 493 Query: 462 DHKKACHH---TLNQYYAA 477 + A L++ + Sbjct: 494 ELDAAKTRLQDALSEMWEL 512 >gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 471 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 134/474 (28%), Positives = 209/474 (44%), Gaps = 25/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DN L A +I +FI PE + A + + + Sbjct: 8 ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + ++ L++ + + ++R +E RD+ ++ L+ Sbjct: 64 ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119 Query: 131 VICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185 I + + P + Y+VYTPF KA+ V R ++ Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLPSPAEWPVS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ R + + P +GE A L +F + Y +RD P TS+L Sbjct: 180 ERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + GA +L E+ WREF HL+ P + Sbjct: 240 SENLTYGEISARSLWHAGMRARAEGRA----GAEKFLQEIAWREFGWHLLYHTPEIARRN 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 296 W-RGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFRIFNP Q ++FDP+ + Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + ++ E+ P A P SW + D YP P+V + L Y Sbjct: 415 QRFVAEIARRPGPEALAFFEAVPRSWGLRPD--RCYPGPVVGLAEGRERALAAY 466 >gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 500 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 96/486 (19%), Positives = 172/486 (35%), Gaps = 27/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VW + DLR++D+ L A +S V+ ++ P +AR F++ SL Sbjct: 4 PINIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLAD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ I L Q + LF +++ +N Sbjct: 63 LNQQLARFKTQIYIFSEPM----IALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVSAW 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + + Q L Sbjct: 119 CHSNKIVWHETQTGAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQLNTVYLTDYQELKLD 178 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQL 245 + F G + A ++ F E+ Y + P++ S+L Sbjct: 179 ERYQMVDENFQL----------GGPKQARALIASFFVERGVGYQKGISSPSLSRLHCSRL 228 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304 SPYL+ G +S RQ +++ + + ++++ L W + + Sbjct: 229 SPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRIEFEP 288 Query: 305 -KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + H L W+ G TG PIIDA MR L G+++ R+R + SF+ Sbjct: 289 LNMAYLHYPYRTDEQVEHDLALWQHGNTGIPIIDACMRCLKHTGYINFRMRAMLVSFVTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + W+ LD + + Q AS + R++NP Q + DP G Sbjct: 349 HLNISWQQASMPLAQYFLDFEPGIHYPQIQMQAS--VTGMNTIRLYNPIKQSQDQDPDGV 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIR W PEL N+P++YIH P DL +Y ++D A + + Sbjct: 407 FIRTWCPELKNLPSEYIHQPWLQPPMEAIFNDFDLERDYHPSMIDLDIAAQIARERLWGF 466 Query: 478 KKQSLL 483 +++ + Sbjct: 467 RERKDV 472 >gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239] Length = 465 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 129/477 (27%), Positives = 205/477 (42%), Gaps = 24/477 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R DN L AA V+ VF+ + + + ARQ F + ++ Sbjct: 1 MQLFWHRRDPRTRDNVGLAAAART--GTVVPVFVYDTDLFGT--MGARQRAFFLRHVKRL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 ++ + G D + L + +FYN Y R + +E L+ Sbjct: 57 KERYREFGSDLVVR----AGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + ++L ++ + Y + + P P + Sbjct: 113 GFGV------ETNARTDAVLVDPGRLEERYANHGRFHDEWETVPKPEPSPEPDADALVNM 166 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI------PAIQGT 242 D + G + A F + + Y + RD Sbjct: 167 RDEKTVSEIDPDIDPDIDLPATGYRAARERFDGFLEHGIRSYADTRDDLARAVEAPTHAV 226 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++SPYL+ G + R+ W + F + + +EL WRE HL+ + P + Sbjct: 227 SRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYYTPDLA 286 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + +I W +D +AW +G TG+P++DA MRQLN G++HNR R + ASFL Sbjct: 287 VAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVVASFLT 345 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+DWR G YF +QL+D D ASN+G WQW ASTG DSV RIF+P Q ++D Sbjct: 346 KHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSVD-VRIFDPVAQMAKYDADA 404 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 TF++ ++PEL +VP + I + ++ L+ YP PIVD + + A Sbjct: 405 TFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEGYERAQRVFEEA 461 >gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 486 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 100/486 (20%), Positives = 170/486 (34%), Gaps = 47/486 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V+LVW + DLR+ D+ L A V+ +++ PE + S + SLL Sbjct: 6 PVNLVWFKRDLRVADHAPLREAARR--GAVLCLYVYEPEVYGAETFSGAHLELLNQSLLS 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L+ +G + + L++ + L+ + + + Sbjct: 64 LEAELAARGGRLVFR----VGEMPAVLEALHRDLPLAALYAHEETGDWASFERDRRVRA- 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 P ++ A A+ + P+ + Sbjct: 119 ---WARSRGVPFYEFPSAGVVRGARLPPPARLVAPAAVPAERFRTPWELGLAPSPQNLPT 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + G + LR S+LSP Sbjct: 176 AGEAAARAALESFLTVRGRGYLGGISSPERALRYA--------------------SRLSP 215 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS------WLNELIWREFYRHLMAFYPSV 301 YL++G LS RQ + ++L +G+ + L WR+ + + +YP Sbjct: 216 YLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAFIQKLEWYPRT 275 Query: 302 CMGK---PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 F E + L+A+ G TG+P++DA MR L GW++ R+R + Sbjct: 276 EFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGWLNFRMRALLV 335 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L +DWR LD + + Q +G V RI++P Q + Sbjct: 336 SFACYHLWLDWRPVGRLLARGWLDYEPGIHWP--QLQMQSGVTGVHAPRIYSPAKQARDH 393 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472 DP G FIR W+PEL +PT + P + + +YP PIVD K A Sbjct: 394 DPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAPIVDPKAAYAEARR 453 Query: 473 QYYAAK 478 A + Sbjct: 454 TLGAWR 459 >gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis] Length = 491 Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 114/490 (23%), Positives = 181/490 (36%), Gaps = 24/490 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R LR+ DN A A + +FI P + I + F+ SL + Sbjct: 1 SIIWFRKGLRLHDNPA-LLAAAAGADHLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLD 59 Query: 70 KSLSQKGIVFQYHQCSNFDDS----IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 S +G + + + L + VT+L + E RRD + + Sbjct: 60 ASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAVRQ 119 Query: 126 RLQH---------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + G K+ A + A Sbjct: 120 LAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIAAPSWP 179 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + V + L + + Sbjct: 180 QAAALVSSSVAVPSLTDIGYPPTGTTPFKGGESAALARMADYLSDKGWVCAFEKPKGNPA 239 Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 T+ LSPYL G LSPR +L++ + + S +L+WREF+ Sbjct: 240 AFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWREFFTLCG 299 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P+ P ++I W D + AW+ TG+P IDA M QL GWMH+ R Sbjct: 300 AAIPNFDRM-AGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL W G+ F L+D D + N WQW +++ S YFR+++P Sbjct: 359 SVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YFRVYSPIAF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 GK++D G +IR +LP L ++P +YI+ P + + +YP PIVDH+ A Sbjct: 418 GKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIVDHQAAMK 477 Query: 469 HTLNQYYAAK 478 + + AA Sbjct: 478 ENMARMKAAY 487 >gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36] Length = 473 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 154/486 (31%), Positives = 226/486 (46%), Gaps = 28/486 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + L+W R DLR++D+ AL AA N+ VI VFI + + A Sbjct: 1 MSDKSPI---LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---NALGAAPKWR 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + + + SL + D++E L + + ++++R Y+ + V+RD Sbjct: 54 LGLGVGALADSLEGVSSRLILRE----GDALEALQALIKETGAGTVYWSRLYDPDSVQRD 109 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175 +++ L + I KSF V+ P ++ A YKVYTPF + ++ + A Sbjct: 110 SKIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSD 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + + D + +GE+ A L F V Y RD Sbjct: 170 LPAPESWPDSDALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRD 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 IP GTS LS LS+G +SP QCW+ + D GA ++L EL+WREF HLM Sbjct: 230 IPGTDGTSNLSENLSLGEISPHQCWHAAQRALHDGK----QGAETFLKELVWREFAYHLM 285 Query: 296 AFYPSVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + W ++ ++AWKQG TG P +DAAMR+L G MHNR R Sbjct: 286 HHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHH 469 +FD + W+ E P + A P SW D +YP I+ + Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRER 463 Query: 470 TLNQYY 475 L Y Sbjct: 464 ALETYK 469 >gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM 44928] Length = 473 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 193/461 (41%), Gaps = 26/461 (5%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 DLR+ DN L AA ++D +V+ +F+ IS + F+ SL + +L Sbjct: 28 FTRDLRVHDNPVLAAAAASADGRVVPLFVLDGGIL--PRISETRRRFLEESLADLDAALR 85 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 G + + L + +E + R + Sbjct: 86 ALGGRLVLRSGDVVAEVCR--VVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAELH 143 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + PPG + + + V+TP+ + + ++A + + + G P++ Sbjct: 144 LHDQVHTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRAPASAPRLTVPDIAGLELPTSA 203 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 + GE +++ + V Y + D A TS+LSPYL G Sbjct: 204 DSTLSGGLR-------GGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLHFGC 256 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +S + R P SG ++L +L WR+F+ +MA P + Sbjct: 257 VSATELAARA------SRDHPGSGTEAFLRQLCWRDFHHQVMAARPDAAHT----DLRPR 306 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 W D L AW G TG PI+DA MRQL GWMHNR R+ITA FL K L +DWR G Sbjct: 307 GAWVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWRSGA 366 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +F LLD D+A+N WQW A TG D+ P R+ NP Q R+DP G ++R ++PEL Sbjct: 367 AHFAHHLLDADVANNILNWQWVAGTGMDTRP-NRVMNPLRQATRYDPSGEYVRRYVPELA 425 Query: 434 NV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHT 470 ++ +H P L+YP PIV+ K Sbjct: 426 DLSDAADVHQPWRLGPVALKELDYPAPIVEVDGGKVGRRLA 466 >gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21] Length = 437 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 223/473 (47%), Gaps = 47/473 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN ALY A S KV VFI + + FI+ L + Sbjct: 9 IFWFRRDLRLQDNHALYEALR-SGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K L Q+ ++ D+ + + + +++N YE +RDK + L+ Sbjct: 68 KQLEQQSSGIAFYH----DEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRDKEISDFLRQ 123 Query: 130 RVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + +L + Y V+TP+R + L ++ L++ P Sbjct: 124 YHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLAALRS 183 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSP 247 IP + F A FP K K + Y + RDIPA + TS LS Sbjct: 184 HWQTIPTLKELGFVATKQTFP----------SKSYKAVIGDYHQTRDIPADEKGTSHLSV 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S R ++ +WLNELIWREFY ++ +P + K F Sbjct: 234 HLRFGTVSIRSLIKDARQA----------SEKTWLNELIWREFYMMILWHFPE-TVNKAF 282 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++I W + AW QG TG+P++DA MRQLN G+MHNR+RM+ ASFL K LL+ Sbjct: 283 KSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLCKHLLI 342 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE YF +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+ + + Sbjct: 343 DWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPKLVYAKR 402 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL++ YP PI++HKKA L Y A K Sbjct: 403 WIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALKD 437 >gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi] Length = 525 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 101/500 (20%), Positives = 183/500 (36%), Gaps = 34/500 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L+AA + +F+ E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + + KL + + E RD ++ + Sbjct: 65 NQFKKYGGKLIMLK----GKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACRE 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + C+ + L P +++ + + + + V +T Sbjct: 121 IGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVGDPPRPVPDVDMSGITFGT 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + F + P I ++Q Sbjct: 181 LPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQMQQRLAVEHETFRKG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + LSP L G LS R + +++ F + S A +LIW Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLSSAHFITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE++ + P+ + + + LQ W +G TGFP IDAAMRQL G Sbjct: 301 REYFYTMSVNNPNYGQMADNPICLDIPWKHPEGDELQRWIEGRTGFPFIDAAMRQLRAEG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405 W+H+ +R ASFL + L + W G +F+ LLD D + G W W +S+ ++ + Sbjct: 361 WLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 P G+R DP G ++R ++PE+ +P YI+ P + +YP P Sbjct: 421 GECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEPWKAPLDVQTRASCIIGKHYPAP 480 Query: 460 IVDHKKACHHTLNQYYAAKK 479 +V+H A N ++ Sbjct: 481 LVNHIVAAQRNRNAMKELRQ 500 >gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740] gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING ENZYME [Wolinella succinogenes] Length = 447 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 130/471 (27%), Positives = 214/471 (45%), Gaps = 31/471 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L+W R DLR+ DN+ A +V+ +FI R+ +IY +++++ Sbjct: 3 SLIWFRRDLRLEDNRTFEQAS----GEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +G+ + + ++ L +Q ++LF ++ Y+ + RD+ + L Sbjct: 59 SELRARGLDLAIF----YGEPLKILSRL-KEQGFSRLFASQDYDSYALSRDEAARELLD- 112 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 C+ D+ L P +L Y +++ + ++ L + + L + Sbjct: 113 ---CRFVLDNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSE----GHYAKGLDLPKKLA 165 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPY 248 P IP P+ + L R RD + TS LS + Sbjct: 166 PYPIPAPPSLESMGFSPLPLLESLKILPQKRLEEFSSKITRYALDRDSLEAEATSGLSLF 225 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G L R+ RLK + + + +++WREFY L+ +P + F Sbjct: 226 LRFGTLGVREVIRRLKVWQEEGIKV-----APFYRQILWREFYAMLLYHFPHSER-EDFK 279 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P + W++ L+ W++G G P++DA MR+LN G+MHNR RM+ ASFL K+L + Sbjct: 280 PMQ--MRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTKNLHLH 337 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP Q +FDP+G +++ W Sbjct: 338 WSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGEYVKRW 397 Query: 429 LPELNNVPTQYIHAPHSWLDK-NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL + TQ S ++ L Y PIV K++ + Sbjct: 398 IPELRGISTQN----WSSEERWEGLKERYLAPIVSAKRSAQEAKAMQNTLR 444 >gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39] Length = 433 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 220/479 (45%), Gaps = 51/479 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + + WLR DLR+ D+ ALY A V+ +FI + + + F Sbjct: 1 MKKE----ISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTF 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 IY ++ ++ + L+Q + + +V +F N YE RD Sbjct: 56 IYNTIKELNEQLAQHDSSIVVKH----GSPEKAWTELMEEYQVKSVFTNHDYEPYAAERD 111 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 L + L+ I ++ D V+ I+ + Y V+TP+ K ++ L ++ P+ Sbjct: 112 DSLAEFLRSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPI 171 Query: 180 PA-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ + +IP D F+A FP + + + + RD P Sbjct: 172 KKYLKHLLKIKRQHIPSLSDMGFEASAQKFPSEDFSRKLDAYE----------KLRDFPG 221 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T+ + +L G +S R A WL+EL WR+FY ++ + Sbjct: 222 ADATTHIGMHLRFGTVSIR----------HAAAQAKTQQAEKWLSELAWRDFYMMILWHF 271 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + F P I+W + +AW QG TG+P++DA MRQLN G+MHNR+RM+ A Sbjct: 272 PH-TVNSAFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVA 330 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K LL+DW+ GE YF +LLD ++ASN GGWQWA GND+ PYFR+FNP +Q K+F Sbjct: 331 SFLSKHLLIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKF 390 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP +I WLPE + H P PIV+H A L + AA Sbjct: 391 DPDFKYIDKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430 >gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM 6946] Length = 452 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 31/471 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D + + + +V+ +FI + R+ FI+ +L ++ Sbjct: 4 VLWFRRDLRVDD-----SMLLSVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G+ + +E SY + ++ + Y+ RD+ + L Sbjct: 59 KLKALGLDLALF----YGTPLEVF-SYLKTLGFSDVYASVDYDAYAKERDEKVGAIL--- 110 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +DS L P +L Y V+TPF KA Q Q + RL Sbjct: 111 -RFHALNDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTKATQRLCEFDCS 169 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK------EKVYYYVEQRDIPAIQGTSQ 244 + + M IG L + K K+ Y RD A TS Sbjct: 170 ALWHIEKESKTALHVKMENIGFIPLHVKLLEPHKALEAFTCKLDAYAHDRDFLACDATSH 229 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS +L G + R+ L + +LI+REFY +L+ +P + Sbjct: 230 LSVHLRFGTIGIREVVRYLVALKKQG-----HTTEPFFRQLIFREFYAYLLYHFPHLAWK 284 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++ + + TG+P++DAA+R+L G MHNR RM+ SF K Sbjct: 285 NY----KYTPPYEENQESYERFITAQTGYPLVDAAVRELLETGLMHNRARMVVGSFFTKH 340 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+ W+ GE +F LLD D ++N WQW A TG D PYFRIFNP Q +FD + + Sbjct: 341 LLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDPQPYFRIFNPYAQSLKFDKEALY 400 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 I+ +LP+L ++P+ +H S+L +++ +YP PI+ H+KA LN + Sbjct: 401 IKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQHEKARKRFLNAFA 449 >gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601] Length = 477 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 223/482 (46%), Gaps = 26/482 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I S+R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLVMEE----GDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------------ADLRS 176 I LL + +++ + D+ + Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + + +P I P P + ++K+Y Y RD Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETLLENFINEKKIYSYNSARDF 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295 P+ GTS LS L G +S R+ WN DL + +W EL+WREFY+H + Sbjct: 241 PSHNGTSFLSASLRFGTISIRKVWNATLNLNSDLENQGNYLSIETWQKELVWREFYQHCL 300 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR RM Sbjct: 301 FHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCRM 359 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 IVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQA 418 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 K+FDP +I++W+PEL+ V + + N +Y PIV+HK + Y Sbjct: 419 KKFDPICEYIKYWIPELSKVSNSEL---LNGDISNLEKNDYSSPIVNHKIQQRLFKSLYA 475 Query: 476 AA 477 Sbjct: 476 EI 477 >gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana] Length = 617 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 118/484 (24%), Positives = 196/484 (40%), Gaps = 27/484 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + +VW R DLRI DN AL AA + V VFI PE+ Q ++ Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAA--HEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +SL G + +++ + TK+ +N Y+ + RD + Sbjct: 59 SLAHLSQSLKALGSELTLIKTH---NTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115 Query: 124 EKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPV 179 +++L I + L P I + + ++ + K + +++ + Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175 Query: 180 PAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 P V +I + + G NA IL +F ++++ Y + Sbjct: 176 PISTAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 TS LSPYL G +S R+ + + + + S + + R Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA---MRQLNTIGWMH 350 + Y S+ ++ + ++ T + + G MH Sbjct: 296 YLGIYVSISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGYGCMH 355 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLR+I +SF VK LL+ W+ G +YF LLD DL + GWQ+ + + D R+ N Sbjct: 356 NRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDN 415 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P IQG ++DP+G +IR WLPEL +PT++IH P +L NY PI+D Sbjct: 416 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPILDID 475 Query: 465 KACH 468 A Sbjct: 476 TARE 479 >gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum] gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum] Length = 512 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 187/494 (37%), Gaps = 33/494 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LRI DN +L N+ +FI P + + F+ L + Sbjct: 7 VHWFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSDLDN 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + E L Q T + E RD+ ++ Sbjct: 66 SLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSEM 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+N + + L++ + + + L T Sbjct: 122 GISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGNAFT 181 Query: 190 PSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P + ++ ++ GE AL L+ + K + + Sbjct: 182 PIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAFIASFGKPKM 241 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + L+PYL G LS R ++ L E + + S +L+WR+F+ Sbjct: 242 TPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKKIRKSQ--PPLSLHGQLLWRDFFYC 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +I W+K+ L W G TG+P IDA M QL GW+H Sbjct: 300 ASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCIA 358 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL + DL + W G + F LLD D + N G W W + + + + + P Sbjct: 359 RHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCS-SFYQEFIHCYCPV 417 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 G++ DP G +IR ++P LNN+P QYIH P + + ++YPLPIV+H A Sbjct: 418 RFGRKVDPNGDYIRRYIPALNNMPNQYIHEPWLAPESIQFSANCIIGIDYPLPIVNHINA 477 Query: 467 CHHTLNQYYAAKKQ 480 L + A +Q Sbjct: 478 SKINLERMKLAYQQ 491 >gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 499 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 165/490 (33%), Positives = 223/490 (45%), Gaps = 37/490 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L A + A V VF+ P +S + F+ SL ++Q Sbjct: 7 LFWHRRDLRLADNLGLAA-AARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + D E L + +NR E + RD+ + + L+ Sbjct: 66 RWREAGSRLLLLR----GDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185 + D +L+PP ++ A Y+VY PF ++ + + QA + A + Sbjct: 122 GCKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLIDL 181 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---------------- 229 P R ++ + G+ Sbjct: 182 DPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRPGEAAAAAQLAAFADGP 241 Query: 230 ---YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNEL 285 Y R++PA GTS LS L G LSPRQ W +++ + + W EL Sbjct: 242 LLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITVWEQEL 301 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREFY+ + +P + G P+ P W D AW G TG PI+DAAMRQLN Sbjct: 302 AWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPIVDAAMRQLND 360 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMHNR RMI ASFLVKDL+VDWR GE FM L+DGDLA+NNGGWQW+AS+G D P Sbjct: 361 SGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASSGMDPKP- 419 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK- 464 RIFNP Q RFDP+ T+IR WLPEL+ V T + + YP PIVDHK Sbjct: 420 LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLER---RGYPGPIVDHKL 476 Query: 465 -KACHHTLNQ 473 +A L+ Sbjct: 477 QQARFKALHA 486 >gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura] gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura] Length = 533 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 186/498 (37%), Gaps = 36/498 (7%) Query: 11 LVWLRNDLRITDNKALYA---ACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL A + + V +FI P + A + F+ +L Sbjct: 9 VHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQTL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + L + + ++ RV L + E ++RD ++K Sbjct: 69 HDLDQQLRKLNSRLFVVR----GKPVDVFPRVFKSWRVELLTFETDIEPYALQRDAAVQK 124 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----------------ALIQN 168 + I S + ++ T + L + Sbjct: 125 LAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKVLELPEKLAKK 184 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + P + R D G + LR + Sbjct: 185 ALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLGPNKFPGGETEGLRRMKESLRDELWVARF 244 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 T+ LSPYL G LS R +++ + + K S + +L+WR Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSAR-LFHQQLKAILKRQSKHSQPPVSLIGQLLWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EFY + A P+ + +I W + + L+AW G TG+P IDA MRQL GW Sbjct: 304 EFYYTVAAAEPNFDRM-LGNVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G+ F LLD D A N G W W +++ YFR Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +++P GK+ DPQG +IR ++PEL P I+ P L ++YP IV Sbjct: 422 VYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIV 481 Query: 462 DHKKACHHTLNQYYAAKK 479 H+ + + AA K Sbjct: 482 KHELVHKENIKRMSAAYK 499 >gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni] gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni] Length = 546 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 135/508 (26%), Positives = 203/508 (39%), Gaps = 37/508 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAK--VIAVFIATPEQWRQHGISA 55 M+A T + + W R LR+ DN AL + K V +FI P + A Sbjct: 1 MEAKTK-ATLIHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGA 59 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ +L + K L Q + IE V L + E Sbjct: 60 NRWRFLQQTLDDLDKQLRQLNSRLYVVR----GKPIEVFPRLFKSWNVELLTFESDIEPY 115 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADL 174 RD ++K + I S + ++ L + AL++ L A + Sbjct: 116 AQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKV 175 Query: 175 RSLPVPAIRLTGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 P LT P + + P + +FP GE L + Sbjct: 176 LDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRMEDS 235 Query: 223 CKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 ++++ ++ A T+ LSPYL G LS R + RLKE K Sbjct: 236 LNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKEILAK-HPKHSQPP 294 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +++WREFY + A P+ + +I W + L+AW G TG+P IDA Sbjct: 295 VSLVGQVLWREFYYTVAAAEPNFDRM-LGNVYCLQIPWQEHPEHLEAWTYGRTGYPFIDA 353 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W ++ Sbjct: 354 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSA 413 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451 + YFR+++P GK+ DPQG +IR + PEL N P + I+ P + Sbjct: 414 SAFFHQ-YFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEPWLATLQAQREYGCV 472 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 L +YP IV H+ + + A K Sbjct: 473 LGEDYPHRIVKHELVHKENIKKMSEAYK 500 >gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 712 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 218/487 (44%), Gaps = 25/487 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ +PE+ + ++ SL ++ Sbjct: 18 VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + + DS+ L T LF+N Y+ + RD L++ L Sbjct: 77 SLHRLGAGKLVTRRSA---DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTS 133 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++ L P + + Q + ++ PF + LP I Sbjct: 134 EGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLS 193 Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + F+ + + + G QNA L F + Y R TS Sbjct: 194 MCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTS 253 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L +P Sbjct: 254 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP 313 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ +S Sbjct: 314 -CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 372 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G +FD Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFD 432 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHT 470 P G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEA 492 Query: 471 LNQYYAA 477 L++ + Sbjct: 493 LSEMWQL 499 >gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49] Length = 452 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 136/448 (30%), Positives = 211/448 (47%), Gaps = 30/448 (6%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + Q +++ SL ++ SLS G + + E + S ++ R +F+NR+Y Sbjct: 1 MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + D ++K L R I S + L P ++ ++V++ + +A ++ Sbjct: 57 SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFF 116 Query: 172 ADLRSLPVPAIRLTGPVTPSNIP----------RFFDYPFQAIDPMFPIGEQNALHILRK 221 I + + + + GE+ A H L Sbjct: 117 PPCPLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQLEA 176 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIK 273 F + Y RD PA + TS+LSPYL G +S RQ W V + Sbjct: 177 FIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRIDDA 236 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + +EL WREF +L+ F + + W D+ L+AW++G TG+ Sbjct: 237 KNESLNKFFSELGWREFSYYLLYHC-EPLHQFNFRRQFDAMPWRTDAKALRAWQRGKTGY 295 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR+L GWMHNR+RM+TASFL K LL+DWR GE +F L+D D ASN GWQ Sbjct: 296 PLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGWQ 355 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--- 450 W + +G D+ PYFRIFNP +QG++FD G + R W+PEL+ +P + +H+P + + Sbjct: 356 WVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALRE 415 Query: 451 ---DLSLNYPLPIVDHKKACHHTLNQYY 475 L +YP PIVDH+ A L+ Sbjct: 416 ASIALGASYPFPIVDHQVARARALSSVE 443 >gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-2A] Length = 490 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 194/490 (39%), Gaps = 30/490 (6%) Query: 7 MSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 MS++ +VWL+ DLR++D++AL+ A ++ +++ SAR FI Sbjct: 1 MSINKKELAVVWLKRDLRLSDHEALHNALATKKRCLL-MYVFEDILLSDFHYSARHFDFI 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S++++ L + IE LD+ Q + + RDK Sbjct: 60 KQSIVEMNNQLKLFNTRVLCLK----GSVIEALDTLSEQYSIALYSHQETGIGLTFERDK 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++ + + + G L + + ++T + N D + + Sbjct: 116 SVKQWADKNGVHWNEFLQQGVFRG--LPNRKKWIHLWTAHMNRPLFNFSPEDDQFISAEL 173 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--I 239 I + P GEQ A L F + + Y + P Sbjct: 174 I-----CEFEKEFEVMELNTPKSQWFQPGGEQKASRYLNSFFERRYLNYQKHISKPDLAR 228 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S+LSPY++ G +S RQ R +EE S+ + L W+ + Sbjct: 229 KSCSRLSPYIAWGNISMRQVLQRTQEE--KERGNKSRALVSFGSRLRWQAHFIQKFEMEC 286 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S+ K + K L+AW+ G+TG P++DAAMR L T G+++ R+R + S Sbjct: 287 SME-YKSINKGYHALVKEKRVDYLKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVS 345 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F++ L W+ + Q LD + + Q A G + RI+NP G D Sbjct: 346 FVIHQLWQPWQSISGFLARQFLDFEPGIHFPQIQMQA--GETGINTLRIYNPVKNGLEHD 403 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473 PQG F+ W+PEL +P +++H P L L +YP PIVD Sbjct: 404 PQGKFVSKWIPELQKLPERFLHTPWEITPLESSLYDFKLGEDYPHPIVDIDTTRDKASQI 463 Query: 474 YYAAKKQSLL 483 + +K SL+ Sbjct: 464 LWNLQKNSLV 473 >gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74] Length = 561 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 102/496 (20%), Positives = 177/496 (35%), Gaps = 49/496 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQWRQHGISARQSHFIYA 63 +++++W + DLR+ D+ L AA ++ ++ P R F+Y Sbjct: 15 TINILWFKRDLRLRDHAPLQAAIAMGQRAPKRPLLLLYCFEPSLIADPNYDLRHWRFVYE 74 Query: 64 SLLQVQKSLS--------QKGIVFQYHQCSNFDD--------------------SIEWLD 95 L ++K L+ G + FDD + L Sbjct: 75 CLADLRKQLATVPPPAPSDTGRLVHEWLPFEFDDQADDHQPETGLPTVWVFHREVTDVLT 134 Query: 96 SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 + Q + +F ++ + + + + + L+ Sbjct: 135 ALQTQFTIGSIFSYQETGLAVTYDRDKAVAQFC-----RQQGIGWQEFQNNGVFRRLKNR 189 Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 + + +Q Q + PA P + P GE N Sbjct: 190 DTWAAQWQQTMQQPQQHPDLTAWYPADVPPDWFEAERGPDLPAAWQRPNPSFQPGGEYNG 249 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLI 272 L F +E++ Y P S+LSPYL+ G LS RQ + ++ L Sbjct: 250 HRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIRQVYQAQQQAAKKPQLA 309 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + ++ + L W + + + + N + AW+ G TG Sbjct: 310 GLRRQLAAFASRLRWHCHFIQKFEREERMEFENV-NRAFDAVPKNVNPDHYAAWRDGRTG 368 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR L G+++ R+R + SFL L W+ G + D + + Sbjct: 369 YPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHWQEGGWHLARLYTDFEPGIHYA-- 426 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447 Q +G RI+NP Q + DPQG FI+ W+PEL N PT YIH P + Sbjct: 427 QLQMQSGMTGTNTIRIYNPVKQSQEHDPQGVFIKQWVPELANCPTAYIHQPWTMPPLEQA 486 Query: 448 -DKNDLSLNYPLPIVD 462 + + ++YP PI+D Sbjct: 487 MEHFQIGIDYPAPIID 502 >gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora] Length = 552 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 196/493 (39%), Gaps = 32/493 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W+R DLR+ DN +L A SD V +++ + GI F+ SL V Sbjct: 29 AIHWVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSLEDVD 87 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + + + + + + L + E +D + Q Sbjct: 88 DSLRKLNSRLFVVR----GQPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRLLAQE 143 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + S P I+ H + A++++L + L G Sbjct: 144 SGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLLGGCS 203 Query: 189 TPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 TP + + ++ ++ GE AL L + + K + ++ Sbjct: 204 TPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAWIASFEKPKV 263 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL G LSPR ++RL E + + K S +L+WREF+ Sbjct: 264 TPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKVK--CKDPPISLYGQLLWREFFFT 321 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + A P+ P +I W + L+ W+QG TGFP IDA M QL G +H+ Sbjct: 322 VAANNPNFDQMDE-NPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLKQEGXIHHLA 380 Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R FL + DL + W G + F LLD + + N G W W + + +F P Sbjct: 381 RHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMWLSCS-AFFQQFFNCICPV 439 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466 G++ DP G ++R +LP L P +YIHAP + + + + +YP PIVDH K Sbjct: 440 GFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPRPIVDHHKV 499 Query: 467 CHHTLNQYYAAKK 479 L + K Sbjct: 500 STANLEKMRNVFK 512 >gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314] Length = 476 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 148/506 (29%), Positives = 210/506 (41%), Gaps = 58/506 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M +TA S +VW R+DLRI DN AL A VI +FI + + + Sbjct: 1 MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFIDED---QPRALGGAARWW 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 SL + +L+ G+ D + L + + +NR+Y RD Sbjct: 55 RDRSLTLLVDALATHGVPLLRRS----GDPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110 Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L+ + S +L P + + A YKVYTPF KA ++ R Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQ 233 +LTGP TP D P + + Y + Sbjct: 171 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 230 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD A TS LSP+L G +S + W + I A + EL+WR+F H Sbjct: 231 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATD-AQVFRKELLWRDFAWH 289 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------------------AWKQGYTG 332 + P + + + + AW+ G TG Sbjct: 290 RLYALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTG 349 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 P++DA MR+L G MHNR RM+ ASFL K+L + WR GEE+F L+D D ASN W Sbjct: 350 IPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNW 409 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QWAA +G+D+ PYFRIFNP Q ++FDP T+IR W+PE Sbjct: 410 QWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------- 450 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAK 478 + YP PIVD K++ L+ Y A K Sbjct: 451 TPEYPAPIVDLKESRREALDAYEAVK 476 >gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii] Length = 494 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 131/483 (27%), Positives = 212/483 (43%), Gaps = 26/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN A + V+ +FI E+ + ++ SL+ Sbjct: 4 STTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ G + S+ L + T++FYN Y+ + RD ++ L Sbjct: 62 LNSSLAKLGCPLLMQKS--RGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I ++ L P + + Y + F + + + D LP + Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPA 179 Query: 187 PVTPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + F + + G NA L F + Y + R Sbjct: 180 EPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNRGK 239 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYR 292 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ R Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +L +P + + W D +AW+QG TG+P++DA MR+L GW+HNR Sbjct: 300 YLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ P Sbjct: 359 IRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPH 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 ++G+RFDP G ++R WLPEL+ +PT++IH P + +L NYP P+V+ A Sbjct: 419 VEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAA 478 Query: 467 CHH 469 Sbjct: 479 RER 481 >gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 142/469 (30%), Positives = 217/469 (46%), Gaps = 44/469 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R DLR+ DN L A D +VI VFIA P Q S F+ SLL++ Sbjct: 4 IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG F ++ + + + + ++ N Y + RD+ + K + Sbjct: 63 DELRKKGSRLNVF----FGEAEKVVSRFFNKVDA--IYVNEDYTPFSISRDEKIRKVCEE 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + LL P S+ +H + + + + + VT Sbjct: 117 NGIEFKAYEDYLLTPKSLFHHRNFTSFYNEVSKVKVRE-----------PETMEGSFDVT 165 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S++ F F+ I+ G + L + +RD PA +LSP+L Sbjct: 166 DSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDF-----RRRDYPAENNNYRLSPHL 220 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R+ + K G ++ EL WR+F+ L + P V G + Sbjct: 221 KFGTISMREAYYTQK------------GKEEFVRELYWRDFFTLLAYYNPHV-FGHCYRR 267 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VDW Sbjct: 268 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDW 327 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF ++L+D D A NNG WQW ASTG D + FR+FNP Q ++FDP+ FI+ W+ Sbjct: 328 RWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEWV 385 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL +VP IH+ + YP PIV+ + ++ ++Y K Sbjct: 386 EELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11] Length = 479 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 214/481 (44%), Gaps = 28/481 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR++D+ AL AA ++ VFI + A + L K Sbjct: 11 ILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAVQA---LGAAPKWRLGLGLEAFAK 66 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 LSQ G Q +++ L+S +F++R YE + RD ++ L + Sbjct: 67 GLSQIGSRLILRQ----GAALDVLESLIRDTGAGTVFWSRGYEPVSIARDTRIKSALTGQ 122 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIRLT 185 I L P +I + Q ++++TP +A+ V + + Sbjct: 123 GIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRAVQGRDVPTPEPGPARLMAPEGWPGS 182 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + R + P GE A L F Y EQRD GTS L Sbjct: 183 DQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFLHRIDQYA-EQRDRVDKTGTSDL 241 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YLS+G + PR W+R++ GA ++L +L+WREF HLM +P + Sbjct: 242 SEYLSLGEIGPRMIWHRVQNAARTGA----PGADAYLRQLVWREFAYHLMYHWPHLLTDN 297 Query: 306 PFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P + W D +AW+Q TG P++DA +RQ+ G MHNR RMI AS+L K Sbjct: 298 W-KPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRMHNRARMIVASYLTK 356 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L+ W++G ++F L D D A+N GWQW A +G D+ PYFRIFNP Q RFDP Sbjct: 357 HLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIFNPQTQRVRFDPDEG 416 Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +IR W+ E P A P SW D YP P+V K+ L + + K Sbjct: 417 YIRRWIAEGQARPEATALAYFDAIPRSWGLSPDDP--YPEPVVGLKQGRTRALRAFESRK 474 Query: 479 K 479 K Sbjct: 475 K 475 >gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8] gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8] Length = 494 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 196/471 (41%), Gaps = 23/471 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLL 66 L R DLR+ DN L AC SD +V+ FI P Q S F+ SL Sbjct: 36 SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDNNAFFSEHAFAFLVRSLK 94 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ L ++G + D L ++ + NR Y RRD L Sbjct: 95 ELRRRLRERGGRLFVFE----GDPAAILSELISAGDISAVHVNRDYTPFARRRDDQLRSV 150 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +++LL + + +T V V Sbjct: 151 CREEGARFQSSNALLLTEPEEVQPSGGGA-YHTFTPFRRRAQSVSTPPPRGKVEGPFCDR 209 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ P + D G + L E + Y + R PA + + LS Sbjct: 210 ALSVETTPLETYDRYPTDDLRAKGGRAEGIEFL--EEIETLGAYRDARHQPAKESLTALS 267 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + G +S R+ +K+ F D +++ WR+FY HL+ P Sbjct: 268 AHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLT-TS 318 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P I W + W +G TG P +DA MR+L G+MHNR+RM+ ASFL KDLL Sbjct: 319 LRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDLL 378 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR G ++F L D D A N G WQWAAS G D RI+NP Q ++ DP+ +I+ Sbjct: 379 VDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYIK 436 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PE+ +V + A + D +D + YP PIVD A H + + A Sbjct: 437 RWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 486 >gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii] Length = 527 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 122/496 (24%), Positives = 198/496 (39%), Gaps = 41/496 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSH 59 + L+W R LR+ DN +L AACH S V VF+ P + + Sbjct: 1 MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQ 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + ++LS +G + I+ + + R+ KL + E + R Sbjct: 60 FLLESLQDLDRNLSSRGSKLLLVH----GNPIQVIPELLDKWRIRKLCFEFDTEPYALDR 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSL 177 D +++ + + I S + +L + + + F K L+ Sbjct: 116 DAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKVYY 229 +P + +P + + F + + + + Sbjct: 176 AIPPTGDLHGIKVVPVPTLEELGYADFHEDFSPFRGGETVALTRLEDSLANEKWVCEFEK 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 T+ LSPYL G LS R ++R+KE + S +L+WRE Sbjct: 236 PKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAKSFTSPPV-SLEAQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ + P ++I W D LL AW+ G TG+P IDAAM QL GWM Sbjct: 295 FFYTAAYATANFDKM-VGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 353 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + D+ V W G + F L+D D + NNG W W +++ + Y RI Sbjct: 354 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 412 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 ++P K++D QG +I+H+LPE +I+ P K + +YP P++D Sbjct: 413 YSPITFAKKYDRQGNYIKHFLPE-------FIYEPWKAPAEIQRKAKCIIGKDYPTPVLD 465 Query: 463 HKKACHHTLNQYYAAK 478 H A + AA Sbjct: 466 HAAASKICRERMGAAY 481 >gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S] Length = 500 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 130/474 (27%), Positives = 213/474 (44%), Gaps = 30/474 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R DLR+ D AL AA + VI +++ + RQ + +++ SL + Sbjct: 38 LLWFRQDLRLADQAALGAAVQ--EGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDD 95 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L +KG Q + ++ + + ++ YE +K L R Sbjct: 96 DLRKKGSRLVLRQ----GNCVDQIVQIAEETGARRVHALHHYEPWWRNAEK----ALGKR 147 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLTG 186 + D ++LLPPG++ Y++YTPF +A++ ++ A+ + P G Sbjct: 148 LDLCLHDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPSRIDAPGQWPKG 207 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + A + ++ Y R++P+ +G+S+LS Sbjct: 208 DSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEAADYDRARNLPSREGSSRLS 267 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +SP Q W ++ + ++L ELIWR++ + P+ Sbjct: 268 PHLHFGEVSPAQVWRQVAGAPGNA--------TTFLKELIWRDYAHTQIWAMPAYGSENA 319 Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P + + W AWK G TG+PI+DA MRQL T GWMHNR+RMI ASFL+K Sbjct: 320 -RPAFDAMPWRDLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFLIK 378 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL+DWR G +F L+D A+N+ WQW A +G D+ + RI P Q ++F+ Sbjct: 379 HLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFEA-AD 437 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR W+PEL ++ IH P + +YP +DH++ L + Sbjct: 438 YIRKWVPELAHLNDDVIHDPE---AHDARPADYPAKCIDHREGRERALAAWRRI 488 >gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7] Length = 432 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 142/469 (30%), Positives = 217/469 (46%), Gaps = 44/469 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R DLR+ DN L A D +VI VFIA P Q S F+ SLL++ Sbjct: 4 IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L +KG F ++ + + + + ++ N Y + RD+ + K + Sbjct: 63 DELRKKGSRLNVF----FGEAEKVVSRFFNKVDA--IYVNEDYTPFSISRDEKIRKVCEE 116 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + LL P S+ +H + + + + + VT Sbjct: 117 NGIEFKAYEDYLLTPKSLFHHRNFTSFYNEVSKVKVRE-----------PETMEGSFDVT 165 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 S++ F F+ I+ G + L + +RD PA +LSP+L Sbjct: 166 DSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDF-----RRRDYPAENNNYRLSPHL 220 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S R+ + K G ++ EL WR+F+ L + P V G + Sbjct: 221 KFGTISMREAYYTQK------------GKEEFVRELYWRDFFTLLAYYNPHV-FGHCYRR 267 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + I W + +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VDW Sbjct: 268 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDW 327 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE YF ++L+D D A NNG WQW ASTG D + FR+FNP Q ++FDP+ FI+ W+ Sbjct: 328 RWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEWV 385 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL +VP IH+ + YP PIV+ + ++ ++Y K Sbjct: 386 EELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429 >gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I] Length = 474 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 146/478 (30%), Positives = 226/478 (47%), Gaps = 24/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR+ DN AL AA S A V+ V+I + + A + L + Sbjct: 8 IWWIRRDLRLCDNPALTAAAE-SGAPVLPVYILDE---QDEALGAAPKFRLGLGLDHFGQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G + ++ L + + ++R Y+ +RRD +++ L+ + Sbjct: 64 ELAKAGSCLILRR----GKALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQTLKEQ 119 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 + KS +L P ++ A MYKVYTPF KA+ L+ A + + Sbjct: 120 GVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPAPGKIAAPDNWPAS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE AL L F ++ V Y +RD PA TS L Sbjct: 180 EDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAEDATSGL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SP + W++ GA +L E++WREF HLM P + Sbjct: 240 SENLAWGEISPHRMWHQGSAAMERGS----QGAEHFLKEIVWREFAYHLMYNSPHILTES 295 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W E K + +QAW++G TG+ +DAAMR+L G MHNR RMI ASFL K L Sbjct: 296 WREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+IG ++F L+D D ASN GWQW A +G D+ P+FR+FNP+ Q ++FDP+G + Sbjct: 356 MTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLEKFDPEGAYT 415 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+ E + P + + AP SW ++ P+V + L Y+ A+ Sbjct: 416 SRWIAEGQDTPPRTALDFFDAAPLSWDLSAGMAPA--EPVVSLQAGRDRALTAYHEAR 471 >gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101] Length = 465 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 148/475 (31%), Positives = 213/475 (44%), Gaps = 25/475 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W R DLR+TD+ AL AA VI VFI G+ A + + + Sbjct: 1 MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAVA---GLGAAPKWRLGLGIGAFDDA 56 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130 L +K + D++E L + ++++R Y+ RD +++ L+ Sbjct: 57 LREKSSRLILRK----GDALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLTG 186 V +SF ++ P ++ YKVYTPF A+ V A L + + Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPLSAPKNLTAPDTWPRSD 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + P +GE++A L F V Y RD+P + GTS LS Sbjct: 173 DLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGTSNLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L++G +SP QCW+ + D GA ++L EL+WREF HLM P + Sbjct: 233 ENLALGEISPHQCWHAGQRALHDGK----QGAETFLKELVWREFAYHLMHHSPRILTDNW 288 Query: 307 FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + ++AWK G TG P +DAAMR+L G MHNR RMI AS+L K L Sbjct: 289 REEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASYLTKHL 348 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + WRIG+++F L+D D ASN GWQWAA +G D+ PYFR+FNP Q +FD + Sbjct: 349 MCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDKNRDYT 408 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 W+ E P P W S +YP IV + L Y Sbjct: 409 SRWIAEGRANPHADALRFFDAIPKRWNLSA--SDDYPDRIVALDEGRERALENYK 461 >gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera] Length = 584 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 200/465 (43%), Gaps = 27/465 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 108 VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 166 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L +G+ E L S ++ +++ E+ ++L Sbjct: 167 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 222 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ V+ S S L + L D+ + ++ Sbjct: 223 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 282 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD-IPAI 239 + P I+ + G + ++ + Y R+ + Sbjct: 283 ESKCTIRICIRTPTLLGPPPNIEDWGSVSRGMRFIGGEAAALSRDLLKVYKATRNGMLGA 342 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ SP+L+ G LSPR + +K + + L ELIWR+++R L Y Sbjct: 343 DYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--STYWVLFELIWRDYFRFLSVKYR 400 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P + W++D + +AW+ G TG+P+IDA M++L+ G+M NR R I S Sbjct: 401 NSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCS 459 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+ Q K +D Sbjct: 460 FLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYD 518 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 P+G ++ WLPEL +P + P +Y IV K Sbjct: 519 PEGEYVAFWLPELQALPNDKRNFP---------GKSYINQIVPLK 554 >gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp. Ellin185] Length = 463 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 216/497 (43%), Gaps = 62/497 (12%) Query: 9 VHLVWLRNDLRITDNKALYAACHNS----------------DAKVIAVFIATPEQWRQHG 52 LVW R+DLR D+ AL AA ++ A V+A+F+ E Sbjct: 2 TSLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRP 61 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + +++ SL+ ++ L GI + + D ++ ++++ V + +NR+Y Sbjct: 62 LGGAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRY 117 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E D ++ R + + L P +I Y+V+TPF KA + Sbjct: 118 GGPERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQP 177 Query: 172 A----------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 +L A + + + + I + GE A +L Sbjct: 178 REPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDAAHELLAD 237 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 F + V +Y QRD P+ TS+LSP+L G +SP+ W+ + D+ ++ Sbjct: 238 FLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDV--------ETF 289 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L+E+ WREF H + P + + D L AW++G TG P++DA MR Sbjct: 290 LSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPLVDAGMR 349 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G MHNR+RM+ ASFL K+LL+DWRIGEE+F L+D D ASN WQW A G D Sbjct: 350 ELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWVAGCGAD 409 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFR+FNP Q K+FDP ++R W D PIV Sbjct: 410 AAPYFRVFNPETQRKKFDPDERYVRRW--------------------GADDGR---EPIV 446 Query: 462 DHKKACHHTLNQYYAAK 478 D + L Y K Sbjct: 447 DLAETRKAALAAYEHTK 463 >gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor] Length = 690 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 219/488 (44%), Gaps = 25/488 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ +PE+ + +I SL ++ Sbjct: 17 SVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLD 75 Query: 70 KSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + D++ L T +++N Y+ + RD L++ L Sbjct: 76 ASLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLA 132 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ L P +++ Q + ++T F + LP I Sbjct: 133 AEGIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDL 192 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F+ + + + G QNA L F + Y R T Sbjct: 193 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 252 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G LS R+ ++ ++ + + + +L + RE+ R+L + Sbjct: 253 SLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNH 312 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS +P + W + + W+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 313 PS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 371 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + DS RI NP +G +F Sbjct: 372 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKF 431 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH--- 469 DP G ++R W+PEL +PT++IH P +L NYPLPIV+ A Sbjct: 432 DPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQE 491 Query: 470 TLNQYYAA 477 L++ + Sbjct: 492 ALSEMWQL 499 >gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421] gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421] Length = 490 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 117/495 (23%), Positives = 199/495 (40%), Gaps = 27/495 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVW R LR+ DN A A++ +FI P + + F+ SL Sbjct: 1 MIRSLVWFRKGLRLHDNPA-LLDAARDAARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + G Q E L+ + ++ +L + R E RRD+ + Sbjct: 60 EIDGNLRRLGSRLIVLQ----GRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSM 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + L L + T + + + P+ Sbjct: 116 AERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPPP 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI--------- 236 ++ DP P G + VY QR Sbjct: 176 GELDADYGIPTLAELGYPDPECPSRGIIPPGGEGEGLRRLHVYLSDRQRSAGFAKPDTDP 235 Query: 237 --PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 T+ L +L G LS R + +++ + ++ + S + +++WREF+ + Sbjct: 236 TAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEPPM-SLIGQILWREFFYTV 294 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ + P +I W+ + L AW + TGFP IDAAM QL T GW+H+ R Sbjct: 295 GYATPNYDRIE-GNPVCRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRTEGWLHHLSR 353 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL V W G+ F LLD D + N W W +++ + Y+R+++P Sbjct: 354 HAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA-YYRVYSPIS 412 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 K++DP+G ++R +LP+L VP ++I+ P + +YP PIVDH++A Sbjct: 413 FAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQKQAGCVVGRDYPDPIVDHEQAK 472 Query: 468 HHTLNQYYAAKKQSL 482 L + A +Q+ Sbjct: 473 ACNLERMRLAYEQNA 487 >gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp. SKA34] Length = 486 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 109/477 (22%), Positives = 181/477 (37%), Gaps = 25/477 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VWL+ DLR+TD++AL A NS V+ ++I P S R FI+ SL + Sbjct: 2 VWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 60 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L+ +++E LD + LF +++ + L K + Sbjct: 61 LACVNSQVFIFH----GNAVECLDQLMHHCPINALFSHQEIGLGCTFERDLNIKAWCDKQ 116 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + N + R+ + + P +P Sbjct: 117 QIQWHEFQQGAVIRGAKNRTNWDKQWNRVMREPVFSVNLDKVNWVSTYPEQLADMLFSPP 176 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYL 249 + M G AL L F + Y P T+ LSPYL Sbjct: 177 ES------WREREQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTACSRLSPYL 230 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G +S RQ + ++ + D + + + L W + P++ Sbjct: 231 AWGNISLRQVYQQVLAHWNDKG--FRRSLIALSSRLHWHCHFIQKFESEPAIEYFCMNRT 288 Query: 310 WTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + + L+ AWK+G TG P+IDA MR L G+++ R+R + SFL L + Sbjct: 289 YDRLLAESCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVSFLTHHLNI 348 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G + LD + + Q A G + RI+NPT Q + DP G FI Sbjct: 349 DWRDGVTHLAQLFLDFEPGIHYSQLQMQA--GVTGINTIRIYNPTKQAQEHDPDGEFIHK 406 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL N+P + P + + + + Y PI+D K++ + + + Sbjct: 407 WVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSCYLYPIIDLKRSAKEARQRLWGWR 463 >gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum] Length = 482 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 143/494 (28%), Positives = 208/494 (42%), Gaps = 61/494 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+DLR++DN AL A + VI +FI I A + SL + + Sbjct: 24 LLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNALAQ 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 LS G+ + +E L + V + +NR+Y D L+K L+ + Sbjct: 79 DLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQ 134 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLT 185 I L P + YKV+TPF KA + + + ++ VP+ Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP + + E + Y + RD A TS+L Sbjct: 195 PEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSATSKL 254 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S + W + G +L EL+WR+F H + P + Sbjct: 255 SAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMDTQN 307 Query: 306 PFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + + L AW+ G TG P++DA MR+L Sbjct: 308 VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELW 367 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G+D+ P Sbjct: 368 ATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDDASP 427 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 YFRIFNP Q K+FDP T+IR W+PE + +YP PIVD K Sbjct: 428 YFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIVDLK 468 Query: 465 KACHHTLNQYYAAK 478 ++ L+ Y A K Sbjct: 469 ESRQIALDAYSAIK 482 >gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 474 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 112/482 (23%), Positives = 178/482 (36%), Gaps = 30/482 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI 61 M +VW R+DLR+TDN L A ++ VI V+ P+++ ++ F Sbjct: 1 MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ SL +G + + ++ + E RR Sbjct: 60 RQAVADLRASLRDRGGDLLVRS----GRPATVVPELAQRAGADAVYAQTKPATEERRRAA 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L I + L L + + Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233 + +TP +P + + + Y Sbjct: 176 VPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYKTT 235 Query: 234 RDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ +S+ SP+L+ G LSPR ++ + + + + EL WR+F+ Sbjct: 236 RNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANE--DTYWLVFELAWRDFF- 292 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 KP I+W++D L + W G TG P +DA MR+LN G+M NR Sbjct: 293 QFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL L +DWR G YF ++L+D D+ASN G W + A GNDS R F+ Sbjct: 353 GRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVR 410 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466 Q +R+D +I WLPEL +P H P + L ++YP P+VD Sbjct: 411 SQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDAR 470 Query: 467 CH 468 Sbjct: 471 YQ 472 >gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53] Length = 471 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 220/474 (46%), Gaps = 24/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R DLR+ D+ AL AAC S VIAV+I + + Q + +L Q K Sbjct: 7 IVWVRRDLRLADHPALTAACE-SGQPVIAVYIHDDQVAS---LGGAQKLRLDLALAQFGK 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ +G + L + ++++R Y RD ++ L+ Sbjct: 63 TLADRGSRLILRKGPALG----VLRDLIRETGAGAVYWSRLYHATANDRDAAVKSALKAD 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IRLT 185 I +SF +L P ++ YKVYTP A+ N V L + Sbjct: 119 GIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCPAKITAPAVWPAS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + R + +GE A L F ++V YV+ RD+PAI+GTS L Sbjct: 179 DALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKGTSNL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR CW+ + D A +L EL+WREF HL P + Sbjct: 239 SENLTFGEISPRMCWHAGQRALRDGKA----DAEVFLKELVWREFAYHLAHHTPRILTDN 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W + + + AW+QG TG P +DAAMR++ G MHNR RMI AS+L K L Sbjct: 295 WKEDWDAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASYLTKHL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L W++G ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q +FD ++ Sbjct: 355 LTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRAYV 414 Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + W+ E P P SW + D + YP P+V ++ L+ Y Sbjct: 415 KRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466 >gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Pseudoalteromonas atlantica T6c] Length = 495 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 98/482 (20%), Positives = 183/482 (37%), Gaps = 25/482 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D++AL+AA V+ +++ P R F++ S++ + Sbjct: 6 INVVWLKRDLRLRDHQALFAAAQQ-PLPVVMMYLFEPSVIADPHYDVRHWRFVWQSIVDL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L+ F+++ + + ++ +++ + + R+ Sbjct: 65 NSQLADYNARIIVL----FEEAHSVFAQLMQRFHIAGVYSHQEIGLACTYKRDKAIARML 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + AD V + + Sbjct: 121 DAEGISWHEYNHGGVIRGATHRRDWEQNWDKHMNAQC------ADTPLHEVNWLTFATLM 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LS 246 T GE+ A + L F KE+ Y P T+ LS Sbjct: 175 TLDESEALPQEYKTQRPAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSRLS 234 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +S RQ + + ++ + L W + + Sbjct: 235 PYLAWGNISTRQVYQST--ASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEFRPV 292 Query: 307 FIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + E + + LQAWK G TG PI+DA++R L+ G+++ R+R + SFL Sbjct: 293 NKAYLAYEYEQGEQKDANLQAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFLCHH 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR G + LD + + +Q AS R++NP Q + DPQG F Sbjct: 353 LNIDWREGAIHLAQLFLDFEPGIHYPQFQMQAS--VTGTNLIRLYNPVKQSQDKDPQGQF 410 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++PE++++P IH P + +L YP P++D ++ + + + Sbjct: 411 IRRFIPEISDLPDALIHTPWLLTPMECQIYEVELGRTYPHPMIDLEQTGKRARDTLWTFQ 470 Query: 479 KQ 480 K+ Sbjct: 471 KR 472 >gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 510 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 153/510 (30%), Positives = 211/510 (41%), Gaps = 51/510 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L + V VF+ P ++ + F+ SL ++Q+ Sbjct: 7 LFWHRRDLRLADNLGLAT-AAAATPAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S + G + D + L + +NR E RD+ + LQ Sbjct: 66 SWREAGSRLFVLE----GDPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----------LRSLPVP 180 D LL L + V+ + + P Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV------------- 227 A + PR + + P E+ + Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRPGEAAALVQLQAF 241 Query: 228 -------------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL--- 271 + Y R++P GTS LS L G LSPRQ W ++ Sbjct: 242 CDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEALG 301 Query: 272 --IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + + W EL WREFY+ + +P + G P+ P + W+ +AW +G Sbjct: 302 GAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCEG 360 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG PIIDAAMRQLN GWMHNR RMI AS+LVKDL+ DWR GE FM +L+DGDLA+NN Sbjct: 361 LTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAANN 420 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 GGWQW+AS+G D P RIFNP Q +FDP G +IRHWLPEL +V T+ + + + Sbjct: 421 GGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPME 479 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 YP +V HKK Y + K Sbjct: 480 R---RGYPAQVVSHKKQQARFKALYASLPK 506 >gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15] Length = 534 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 142/488 (29%), Positives = 222/488 (45%), Gaps = 35/488 (7%) Query: 12 VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 W DLRI DN AL+ A + ++ V++ HG S + F+ L Sbjct: 50 HWFHPKDLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESWHGTSPARVDFMCEGLKI 109 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L I + +C + + + + Q+V+ +F N +YEI+E+RRD L K++ Sbjct: 110 MQKELKDLNIPLVFLECEDRKKIVPTVIEWLKGQKVSHVFGNYEYEIDELRRDIKLVKQV 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++ PG++L A + KV+TP+ K + L + PA Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPAANPS 229 Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + FD P + I ++P G A + + Y Sbjct: 230 SMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAA-SKRMDAFLKTIDSYAA 288 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWR 288 R PA TS+LS Y S G+ S R ++ + + G + W+ E+++R Sbjct: 289 TRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARPGVYGWVREIVFR 348 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E YR P M P + ++W D + W +G TG P IDA MRQLN + Sbjct: 349 ELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGMRQLNHEAY 408 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHNRLRM +S+L +LL+D+R GE YF L+D DL++N GW+ P + + Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKAC 467 FNP Q +R DP G +IR W+PEL +V + + AP++ L K + YP P VD K+ Sbjct: 459 FNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKPHVDWKQTK 518 Query: 468 HHTLNQYY 475 + ++ Sbjct: 519 QRCMERFK 526 >gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478] Length = 444 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 213/474 (44%), Gaps = 32/474 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+W R DLR+ D+ A +D +V+A F+ P R+ ++ SL Sbjct: 1 MARALLWFRRDLRLRDHP--ALAAAAADDEVLACFVLDPRLEASS--GRRRLQYLGDSLR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ L G E + + + + + + RRD+ + Sbjct: 57 QLRSDL---GGRLLV----TRGRPEERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + +L P G + Y+V+TPF + + + R+ A L Sbjct: 110 LGSVPLVATGSSYLLSP-GRVAKDDGTPYRVFTPFFRRWSELGWPSPARTGRDCARWLDP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P P + GE AL F + + Y + RD P + GTS++S Sbjct: 169 AQVPVEHCEI---PDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLDGTSRMS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L +GA S+L EL +R+FY ++ +P+ Sbjct: 226 AHLRFGTIHPRTMVAAL--------DFSGAGARSYLRELAFRDFYAAVLYDHPASAWRNW 277 Query: 307 FIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +AWK G TGFP+IDA MRQL G+MHNR+RMI ASFLVKD Sbjct: 278 NSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGFMHNRVRMIAASFLVKD 337 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G +F+ QL DGD+ASN GWQW A G D+ PYFR+FNPT QG++FDP G + Sbjct: 338 LHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRVFNPTTQGQKFDPSGDY 397 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR W+PEL+ ++ YP PIVDH L +Y + Sbjct: 398 IRRWVPELSAATDAHL-------RTGKRPSGYPPPIVDHGTERAEALRRYRGMR 444 >gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii] Length = 494 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 132/483 (27%), Positives = 212/483 (43%), Gaps = 26/483 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLR+ DN A + V+ +FI E+ + ++ SL+ Sbjct: 4 STTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ G + S+ L + T++FYN Y+ + RD ++ L Sbjct: 62 LNSSLTKLGCPLLMQKS--RGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I ++ L P + + Y + F + + + D LP + Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPA 179 Query: 187 PVTPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + F + + G NA L F + Y + R Sbjct: 180 EPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNRGK 239 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYR 292 TS LSP+L G LS R+ ++ ++ + D + A +L L +RE+ R Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 +L +P + + W D +AW+QG TG+P++DA MR+L GW+HNR Sbjct: 300 YLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNR 358 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +R+I +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D R+ P Sbjct: 359 IRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPH 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466 I+G+RFDP G ++R WLPEL+ +PT++IH P + +L NYP P+V+ A Sbjct: 419 IEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAA 478 Query: 467 CHH 469 Sbjct: 479 RER 481 >gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays] gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays] Length = 643 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 219/486 (45%), Gaps = 24/486 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN A AA + +V+ ++ +PE+ + ++ SL + Sbjct: 19 VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLDA 77 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + G + S D++ L T LF+NR Y+ + RD ++++L Sbjct: 78 SLRRLGACRLVTRRSS---DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134 Query: 130 RVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I ++ L P +L+ + ++ PF + A P Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSR 194 Query: 189 TPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + F D + + + G QNA L F + Y TS Sbjct: 195 CPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSASTSL 254 Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL G LS R+ +++++ + D + +L + RE+ R+L +P Sbjct: 255 LSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNHP- 313 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ +SF Sbjct: 314 CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSSF 373 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP +G +FDP Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 433 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH---TL 471 G ++R WLPEL +PT++IH P + +L NYP PIV+ A L Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGAL 493 Query: 472 NQYYAA 477 ++ + Sbjct: 494 SEMWEL 499 >gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3] Length = 481 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 152/478 (31%), Positives = 219/478 (45%), Gaps = 25/478 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + WLR DLR+ D+ L AA S V+ VFI A + + L + Sbjct: 8 IYWLRRDLRLADHPGLAAAA-ASGRPVVPVFIHDESVAALGAAPAFR---LGLGLERFGA 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L G + + L + + +++ R+Y + RD L+ LQ Sbjct: 64 TLGDMGSRLILRR----GSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I +SF ++L P ++ A YKVYTPF +A+ Q A R P A + Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAWPGS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ + + GE AL L +F + Y RD+PA GTS L Sbjct: 180 EALSDWGLGAPMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAGDGTSTL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S LS+G + PR W+R E GA ++L +L+WR+F HLM P + Sbjct: 240 SDALSLGEIGPRTLWHRAGEAAHKGA----QGAETFLKQLVWRDFAYHLMYHTPHLLSEN 295 Query: 306 PFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W + AW +G TG P++DAAMR++ G MHNR RMI AS+L K Sbjct: 296 WRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIAASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+V W++G ++F L D D A+N GWQW A G D+ PYFRIFNP Q K+FDP+G + Sbjct: 356 LMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDPKGRY 415 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 HW+ E P + + P SW + D S YP PI+ + L+ Y +A Sbjct: 416 RNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALSAYASA 471 >gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor] Length = 691 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 218/488 (44%), Gaps = 25/488 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ DN A AA + +V+ ++ +PE+ + +I SL + Sbjct: 18 SVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLD 76 Query: 70 KSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + D++ L T +++N Y+ + RD L++ L Sbjct: 77 ASLRRLGAGKLVTRRSA---DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLA 133 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I ++ L P +++ Q + ++T F + LP I Sbjct: 134 AEGIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDL 193 Query: 188 VTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + F+ + + + G QNA L F + Y R T Sbjct: 194 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 253 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+L G LS R+ ++ ++ + + + +L + RE+ R+L + Sbjct: 254 SLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNH 313 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 PS +P + W + + W+QG TG+P++DA MR+L GW+H+R+R++ + Sbjct: 314 PS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 372 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF VK L + WR G +YF LLD DL S+ GWQ+ + DS RI NP +G +F Sbjct: 373 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKF 432 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH--- 469 DP G ++R W+PEL +PT++IH P +L NYPLPIV+ A Sbjct: 433 DPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQE 492 Query: 470 TLNQYYAA 477 L++ + Sbjct: 493 ALSEMWQL 500 >gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC BAA-2122] Length = 487 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 193/490 (39%), Gaps = 31/490 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK ++L+WL+ DLR+TD++ALYAA S + ++ P S R F Sbjct: 1 MKK-----INLLWLKRDLRLTDHEALYAATQ-SGRPTLIFYLFEPFLLDNPHYSERHWRF 54 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +Y SL+ + + L D +L++ C V L+ ++ + Sbjct: 55 VYQSLVDMNRRLEPLNRSITIATT----DIFHFLEAVCSTYDVEMLYSYQEIGLKVTFNR 110 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L + + P G+++ A K + K + L L+ + Sbjct: 111 DLEV----AQYCKQHTIAWQEFPTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEHLL 166 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P +IP M G A L F + + Y + P + Sbjct: 167 PYSEKTLSLPCHIPNA---WRSKTQGMQTGGSDLAWKTLDDFFERRGKNYYKSLSSPTLS 223 Query: 241 G--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S+LSPYL+ G +S R+ + R+ E + + + + L W + Sbjct: 224 RKACSRLSPYLAWGNISLREVYQRVLEHWNTKG--FRRSLTALSSRLHWHCHFIQKFESE 281 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + + QAWK G TG P++DA MR L+ G+++ R+R + Sbjct: 282 CDMEFRCLNRAYEPLLSSSSSTEFDKLQAWKSGQTGVPLVDACMRCLHHTGYINFRMRAM 341 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SFL + DWR G E+ S LD + + +Q A G + RI+NP Q + Sbjct: 342 LVSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQA--GVTGINTIRIYNPIKQAQ 399 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHT 470 DP G FI W+PEL +P +++P + + Y PI+D + A Sbjct: 400 EHDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLNPIIDIEHAGRLA 459 Query: 471 LNQYYAAKKQ 480 ++ + KK+ Sbjct: 460 RDRLWTWKKR 469 >gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49726] Length = 445 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 141/478 (29%), Positives = 213/478 (44%), Gaps = 45/478 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L+ +G+ D+ + S + + +NR+Y D Sbjct: 62 RSLHALAQELASRGVKLL----RATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++ L I S L+ P + N YKV+TPF A L + L + Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A R G S+ P Q + + + + +Y E+RDIPA Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQLDLAHYAEERDIPARN 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP+L G +SPR+ W EE A + +EL+WR+F H + P Sbjct: 238 ATSLLSPHLRFGEVSPREVWVAAAEEP---------DAEKFQSELLWRDFAWHRLYHLPD 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + +W+ + L+ W++G TG P++DA MR+L G+MHNR+RM+ SF Sbjct: 289 LATRNVRQKFNRF-DWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVVGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Q +RFDP Sbjct: 348 LTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQRFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 G +IR W P L+ PIVD +++ L Y K Sbjct: 408 DGAYIRQWAPTLSA-----------------------PPIVDLRQSRQAALEAYAEIK 442 >gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R] gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R] Length = 482 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 143/494 (28%), Positives = 208/494 (42%), Gaps = 61/494 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+W R+DLR++DN AL A + VI +FI I A + SL + + Sbjct: 24 LLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNALAQ 78 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 LS G+ + +E L + V + +NR+Y D L+K L+ + Sbjct: 79 DLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQ 134 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLT 185 I L P + YKV+TPF KA + + + ++ VP+ Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 IP + + E + Y + RD A TS+L Sbjct: 195 PEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSATSKL 254 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S +L G +S + W + G +L EL+WR+F H + P + Sbjct: 255 SAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMDTQN 307 Query: 306 PFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + + L AW+ G TG P++DA MR+L Sbjct: 308 VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELW 367 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G+D+ P Sbjct: 368 ATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDDASP 427 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 YFRIFNP Q K+FDP T+IR W+PE + +YP PIVD K Sbjct: 428 YFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIVDLK 468 Query: 465 KACHHTLNQYYAAK 478 ++ L+ Y A K Sbjct: 469 ESRQIALDAYSAIK 482 >gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 483 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 127/487 (26%), Positives = 212/487 (43%), Gaps = 35/487 (7%) Query: 1 MKATTAMS-----VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---- 51 M+ ++ V +VW RNDLR+ DN L A ++D ++ V+ P Q+ Sbjct: 1 MENKQKINNLRTQVKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGF 59 Query: 52 -GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 A ++ F+ +L ++ +L KG E + + ++ ++ Sbjct: 60 AKTGAHRAQFLIETLANLRANLEAKGSGLVIR----IGKPEEVIADLAKATQAKAVYASQ 115 Query: 111 QYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + E K LEKRL + + L+ P + + V+T FRK + Q L Sbjct: 116 EIGTEEDATVKQLEKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGL 175 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------ALHILRK 221 + +LP L V ++P+ D P Sbjct: 176 KVREAVTLPDTLPLLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYI 235 Query: 222 FCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + + + +Y + R+ +++ SP+L+ G +S R ++ +K+ ++ + Sbjct: 236 WQRSLLQHYKDTRNGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQVVKNK--STYH 293 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAA 339 + EL+WRE++R + Y K I ++E + + + WK G TG P IDA Sbjct: 294 LVFELLWREYFRLVARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDAN 353 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+LN G+M NR R AS+L KDL ++W G YF SQL+D D++SN W + A G Sbjct: 354 MRELNATGFMSNRGRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVG 413 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453 ND R F+ Q R+D +G +++HWLPEL ++P +H PH L Sbjct: 414 NDPR-KDRYFDILSQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILG 472 Query: 454 LNYPLPI 460 +YP PI Sbjct: 473 QDYPKPI 479 >gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001] Length = 522 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 218/476 (45%), Gaps = 20/476 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LV LR+D R+ DN AL+AAC V+ ++ R + + A+ Q+ Sbjct: 60 LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAALQDAPTT--RIAGWAQAACAQLAT 116 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL ++G + T +F+NR+Y+ + D + L+ + Sbjct: 117 SLHKQGQTLLMLSGPTRLSV----PALAQAINATDVFWNRRYDAPGIAADTDVHASLKKQ 172 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + L P +I A Q Y+V+T + +A P + P Sbjct: 173 GVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPDMHGKSYVPAR 232 Query: 190 PSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TS 243 N+P P + GEQ A L +F + + Y QRD TS Sbjct: 233 ALNLPEGVRLARVGTQMPPALPGWTSGEQCAHTNLHRFIENALEDYETQRDRTDATHGTS 292 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPY+ +G +S RQ W+ ++ L + + A +L EL WR+F M P + Sbjct: 293 LLSPYIRVGQISVRQIWHAIR-HAAHLHPQLATDAEKFLAELGWRDFAWMQMFTTPDLAT 351 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W D+ L AW+QG TGFP++DA MRQL GWMHNR+RM+ ASFL K Sbjct: 352 RN-LRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTK 410 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 LL DW+ GE +F + LLD D A N WQW A TG D+ P+FRIFNP Q +++DP G Sbjct: 411 HLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPLGQ 470 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +IR W+PEL + + IH P + LNYP PIVD K L + K Sbjct: 471 YIRTWVPELAALDNKTIHTPWKSAQR----LNYPPPIVDLKLGRLRALECWKNLPK 522 >gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82] Length = 406 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 203/400 (50%), Positives = 271/400 (67%), Gaps = 3/400 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L Sbjct: 1 MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ Sbjct: 61 GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L++ +C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G Sbjct: 121 LRNV-VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P+ FP+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G L PRQC RL E L WL+ELIWREFYRHLM +YPS+C +P Sbjct: 240 ASLATGGLLPRQCLYRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHRP 297 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 FI WT++++W + LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL Sbjct: 298 FIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 357 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF Sbjct: 358 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYF 397 >gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22] Length = 450 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 208/468 (44%), Gaps = 25/468 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L A +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ FD + ++ + Sbjct: 59 EDLKSIGLDLAIF----FDTPKNVFTKLKKEN------FDEILVSVDFDNYAKKRDEEVE 108 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++I L I+ + Q ++ L Q++ + + Sbjct: 109 KIIPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNCLEPLHQSNHIEEFKISTNIKKINY 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + I+ P + L +K+ Y + RD + S LS +L Sbjct: 169 DYDFFPTLQ-DLGFIEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAGSNLSVHL 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G++S + +N++K+ ++ ELIWREFY +++ +P Sbjct: 228 RFGLISAKIVFNKIKKLQAPKKEI-----DFFIRELIWREFYNYILFHFPKSQFENLNGI 282 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + + W +G TG PIIDA+M+ LN G MHNRLRMI AS+LVK+LL+DW Sbjct: 283 KVNWNE---NEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + FI+ L Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +L ++PT+ IH + ++ L+YP IV + + ++ A Sbjct: 400 KDLKDIPTKQIHT--ENGVQENIFLDYPKQIVGINYSRDRAILEFKRA 445 >gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata] Length = 527 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 126/491 (25%), Positives = 192/491 (39%), Gaps = 29/491 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69 + R +LR+ DN L AA +S+A + V+I I A + +F+ SL + Sbjct: 6 IHLFRKELRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLH 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K+L Q G Q + L + + +T++ + + E + +++ Sbjct: 65 KNLGQLGSCLLVIQ----GEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLP 178 S L + T R I +NL D + Sbjct: 121 LGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRCR 180 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P L P G + L + Sbjct: 181 APEPGLAECYRVPLPVDLKISPESLSPWRGGETEGLRRLEQHLIDQGWVTSFAKPRTSPN 240 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + T+ LSPY S+G LS R + RL + S +L+WREF+ + +A Sbjct: 241 SLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVA 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P +I W KD+ L WK TGFP IDA M QL GW+H+ R Sbjct: 299 SATPNFTQMAGNPICLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLARHA 358 Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P G Sbjct: 359 VACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHQ-YTRIFCPVRFG 417 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 KR DPQG +IR +LP L N P++YI+ P + ++ + +YP P+V+HK+A H Sbjct: 418 KRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMVNHKEASDH 477 Query: 470 TLNQYYAAKKQ 480 L +++ Sbjct: 478 NLQLMKQVREE 488 >gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila] gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena thermophila SB210] Length = 472 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 50/477 (10%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHF 60 + V+L W R DLR+ DN LY A S V+ +FI + + + F Sbjct: 11 ENQKKQKVNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEF 69 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 I+ L Q+Q +L + G ++ S + ++ +F NR YE +RD Sbjct: 70 IHNYLSQMQDNLRKHGSTMVVKHS----NAESAFKSLMEEFDISCVFTNRDYEPYAKKRD 125 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + +++ L + I K F D V+ + +KVYTPF K I L + D +S Sbjct: 126 QQIKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKS 185 Query: 180 PAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 ++ P FQ FP + + + + RD P Sbjct: 186 ESLMNNYWKSQVEVPFPTLEQIGFQKTGIEFPPSQLDEELVKNYD---------KTRDYP 236 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 I TS +S +L G +S R+ + +L+EL WREF+ ++ Sbjct: 237 HI-KTSLMSVHLRFGTVSIRELVRKAVLLNQK-----------YLDELCWREFFMMMIDQ 284 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P F K+EW + +AW +G TG+P++DA MRQLN G++ N+LRMI Sbjct: 285 FPLFATEN-FKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIA 343 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 ASFL K+LL+DWR GE YF +L+D DLA+N GGWQW +G D PY R+ +P +Q K+ Sbjct: 344 ASFLTKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKK 403 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +DP +++ W+ ++ YP IV+++++ L+ + Sbjct: 404 YDPDFKYVKTWV-------------------EDFNEDTYPKRIVNYEESRQRALDAF 441 >gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium accolens ATCC 49725] Length = 445 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 140/481 (29%), Positives = 214/481 (44%), Gaps = 45/481 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62 L+W R+DLR++DN+AL A S +++AV + P + + Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + + L+ +G+ D+ + + + +NR+Y D Sbjct: 62 RSLHALAQELASRGVKLL----RATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117 Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180 ++ L I S L+ P + N YKV+TPF A L + L + Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A R G S+ P Q + + + + +Y E+RDIPA Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQLDLAHYAEERDIPARN 237 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP+L G +SPR+ W EE A + +EL+WR+F H + P Sbjct: 238 ATSLLSPHLRFGEVSPREVWVAAAEEP---------DAEKFQSELLWRDFAWHRLYHLPD 288 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + +W+ + L+ W++G TG P++DA MR+L G+MHNR+RM+ SF Sbjct: 289 LATRNVRQKFNRF-DWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVVGSF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Q +RFDP Sbjct: 348 LTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQRFDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 G +IR W P L+ PIVD +++ L+ Y K Sbjct: 408 DGAYIRQWAPTLSA-----------------------PPIVDLRQSRQAALDAYAEIKDA 444 Query: 481 S 481 + Sbjct: 445 N 445 >gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group] Length = 551 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 128/498 (25%), Positives = 201/498 (40%), Gaps = 31/498 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL AA A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + I S P I + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR- 234 P + TG +PR + + I F GE AL +R+ +K + ++ Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 T+ LSPYL G LS R ++ +++ + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W + + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQS 481 A A + Sbjct: 494 AIASKECKKMMGEAYASN 511 >gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100] Length = 454 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 124/458 (27%), Positives = 198/458 (43%), Gaps = 30/458 (6%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57 M++ +VW R DLR+ DN+AL A N+ +VI VFI ++ + Sbjct: 1 MTMKRRAIVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 + FI S+ +++SL + + + L S + + + +F NR+ E Sbjct: 60 AQFIIESVADLRQSLRKLNSDLIVR----VGKTEDILFSMAKECKTSWIFCNRERTAEEA 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ 171 R LE RL ++ +L + L +Q + ++ +V Sbjct: 116 RIQDELENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLS 175 Query: 172 ADLRSLPVPAIRLTGPVTP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 R+ + P N+ F P + E + + Sbjct: 176 KPDRTFNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETD 235 Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y E R+ +S+LSP+L+ G LSP+ ++ LK+ + E Sbjct: 236 LIKNYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKYEAQRGANE--STYWLFFE 293 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WR+F+R + Y + W ++ +LQ W G TG P IDA M +L Sbjct: 294 LLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELK 353 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+M NR R ASFLVKDL ++W++G EYF S L+D D+ SN G W + A G+D Sbjct: 354 HTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPRE 413 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 R FN Q KR+DP G +++HWLPEL ++P +H Sbjct: 414 -DRYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVHE 450 >gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM 12286] Length = 526 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 103/476 (21%), Positives = 181/476 (38%), Gaps = 35/476 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R +LR TD+ AL A D V+ +F+ P+ + G++ + ++ S+ ++ Sbjct: 23 VVWHRRNLRTTDHGALSYAGEEYDT-VLPLFVFDPQFYGNDGLACDARLLLLHESVESLR 81 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G Y D + L + + R D+ Sbjct: 82 RLYEAVGGTLSYAH----GDPLSVLSALAAAGWDIVATADPTARYGRQRDDRAAAH---- 133 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 D + ++ ++ +A ++ + P + P T Sbjct: 134 -------CDVRFVDSDGLVRDQAWPRAGWSDRVEAWFES---SPHSWDPADVSFASLPGT 183 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSP 247 S Y A P G + A + + Y P T LSP Sbjct: 184 VSVADIERTYDVHAAKTTVPPGGRAAGARRLRQFVADIEQYPGNISAPTDARTGTSGLSP 243 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ + + + P +G +++ L W + Y + + Sbjct: 244 HLRFGSLSVREVYRYVMD-----NAPPCTGREMFVSRLYWNKHYHQKLEDWSGWTTTAVN 298 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + D L+ AWK+G TGFP++DA+MR L GW++ R+R + AS Sbjct: 299 PAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVFADLFQQ 358 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W+IG +++ L+D D A N QW + G RI+NP Q + DP GTF+ Sbjct: 359 PWQIGADFYHYHLIDADPAINYT--QWQSQAGTVGTNLMRIYNPIKQVRDNDPDGTFVST 416 Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477 ++PEL +P +Y+ P + +YP P+V+++ A + +Y Sbjct: 417 YVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERYERL 472 >gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 478 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 153/484 (31%), Positives = 220/484 (45%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A SDA + + +I S+R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+NR E E+ RD ++ L+ + Sbjct: 65 NWKKMGSRLVLEE----GDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----------------NLVQADL 174 I LL + ++ D Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + AI + V + +P I P P + ++K+Y Y R Sbjct: 181 KFKENKAINSSDSVLE-KFIKNIKFPGSNICPCRPGENAAQTLLENFINEKKIYSYNSAR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 D P+ GTS LS L G +S R+ WN D + +W EL+WREFY+H Sbjct: 240 DFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIETWQKELVWREFYQH 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W ++ L Q W G TG PI+DAAMRQLN+ GWMHNR Sbjct: 300 CLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP +I++W+PEL+ V + + N NY PIV+H + Sbjct: 418 QAKKFDPICEYIKYWIPELSRVSNSEL---LNGEISNLEKNNYSSPIVNHNIQQRLFKSL 474 Query: 474 YYAA 477 Y Sbjct: 475 YAEI 478 >gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae] Length = 548 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 103/499 (20%), Positives = 181/499 (36%), Gaps = 37/499 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A VFI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + G + + + +L + + E RD ++ + Sbjct: 65 NQLKKHGGRLIMIK----GKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACKE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+CK L P +++ + + + + + + Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + F + P I ++Q Sbjct: 181 LPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNE 284 + + LSP L G LS R + +++ F + +S + + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWRE++ + P+ + + LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEPEGDELQRWVEGRTGFPFVDAAMRQLR 360 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 + P G+R DP G ++R ++PEL +P QYI+ P + +Y Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDIQERATCIIGKDY 480 Query: 457 PLPIVDHKKACHHTLNQYY 475 P P+V+H A N Sbjct: 481 PAPVVNHLVAAQRNKNAMK 499 >gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC 13032] Length = 482 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 209/497 (42%), Gaps = 61/497 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL A + VI +FI I A + SL Sbjct: 21 SPTLLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNA 75 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 76 LAQDLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182 + + I L P + YKV+TPF KA + + + ++PVP+ Sbjct: 132 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSH 191 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 I + + E + Y + RD A T Sbjct: 192 LTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSAT 251 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS +L G +S + W + G +L EL+WR+F H + P + Sbjct: 252 SKLSAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMD 304 Query: 303 MGKPFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMR 341 + + + L AW+ G TG P++DA MR Sbjct: 305 TQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMR 364 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G+D Sbjct: 365 ELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDD 424 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFRIFNP Q K+FDP T+IR W+PE + +YP PIV Sbjct: 425 ASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIV 465 Query: 462 DHKKACHHTLNQYYAAK 478 D K++ L+ Y A K Sbjct: 466 DLKESRQIALDAYSAIK 482 >gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 550 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 117/516 (22%), Positives = 193/516 (37%), Gaps = 53/516 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64 V + W RN LR DN L AC S++ ++ +++ PE R +++F+ S Sbjct: 11 VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR----- 119 + +V + L + G S E L + LFY ++ + Sbjct: 70 INEVDEKLRKMGSQLVV----VLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125 Query: 120 -------------DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 + + + + + K++ A Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185 Query: 167 QNLVQ-----ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------ 215 N V+ + + P+ + + G A Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245 Query: 216 -----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 ++ R + T+ LSPY+ G +SPR+ ++ L + + Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305 Query: 271 LIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K S +L+WR+ + +L+ + P +I W+ D LL AWK Sbjct: 306 NSKETSKPPVSLHGQLMWRD-FNYLVGYSTPNFDKMIDNPIARQIPWDDDPDLLLAWKMS 364 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDA M QL GW+H+ R A FL + DL W G F L+D D + N Sbjct: 365 KTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSIN 424 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 N WQW + T + YFR ++P GK+ DP G +IR WLP+ ++P +YI+ P Sbjct: 425 NFNWQWLSCTAHFYQ-YFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPI 483 Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + + NYP PIVDHK + +++ A Sbjct: 484 ELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEAY 519 >gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis] gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis] Length = 556 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 126/491 (25%), Positives = 197/491 (40%), Gaps = 30/491 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69 + R LR+ DN L AA SD + V+I + +++ +F+ S+ + Sbjct: 6 IHIFRKGLRLHDNPTLVAALETSDI-IYPVYILDKNFMTSSSVIGSKRWNFLLQSIEDLH 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + Q D L + + +T++ ++ + E D+ + Q Sbjct: 65 CNLQKLNSCLFVIQ----GDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQE 120 Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 S L SIL + ++ L D + + Sbjct: 121 LGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKCT 180 Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGE----QNALHILRKFCKEKVYYYVEQRD 235 TP+ Y + P + GE L K + + Sbjct: 181 TPTEFAAEEYYRIPKPEDLGICRDCAPNWKGGESEALCRLEQHLEKQGWVANFQKPQTVP 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + T+ LSPY S G LS R ++RL + S +L+WREF+ + Sbjct: 241 NSLLPSTTGLSPYFSFGCLSARVFYHRLSNIYAQSKNHSLPPV-SLQGQLLWREFF-YTA 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P +IEW K+ LQ W++G TGFP IDA M QL+ GW+H+ R Sbjct: 299 ASSTPNFTHMVGNPICLQIEWYKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL + W G + F LLD D + N G W W +++ Y RIF P Sbjct: 359 AVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 G+R DP+G +IR +LP L N P +YI+AP + ++ + +YPLP+VDH A Sbjct: 418 GRRTDPEGNYIRKYLPVLKNFPAKYIYAPWTAPEEIQKQSGCLIGKDYPLPMVDHTTASE 477 Query: 469 HTLNQYYAAKK 479 H L ++ Sbjct: 478 HNLQLMRLVRE 488 >gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 463 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 196/471 (41%), Gaps = 23/471 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLL 66 L R DLR+ DN L AC SD +V+ FI P Q S F+ SL Sbjct: 5 SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDNNAFFSEHAFAFLVRSLK 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++ L ++G + D L ++ + NR Y RRD L Sbjct: 64 ELRRRLRERGGRLFVFE----GDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQLRSV 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +++LL + + +T V V Sbjct: 120 CREEGARFQSSNALLLTEPEEVQPSGGGA-YHTFTPFRRRAQSVSTPPPRGKVEGPFCDR 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ P + D G + L E + Y + R PA + + LS Sbjct: 179 ALSVETTPLETYDRYPTDDLRAKGGRAEGIEFL--EEIETLGAYRDARHQPAKESLTALS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 + G +S R+ +K+ F D +++ WR+FY HL+ P Sbjct: 237 AHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLT-TS 287 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P I W + W +G TG P +DA MR+L G+MHNR+RM+ ASFL KDLL Sbjct: 288 LRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDLL 347 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR G ++F L D D A N G WQWAAS G D RI+NP Q ++ DP+ +I+ Sbjct: 348 VDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYIK 405 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PE+ +V + A + D +D + YP PIVD A H + + A Sbjct: 406 RWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 455 >gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049] Length = 464 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 201/471 (42%), Gaps = 21/471 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +H+ W + DLRI DN+ L AA +D +V+ V++ + I RQ F+ A + + Sbjct: 9 MHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLAN--IGKRQKAFLLAGVRAL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ G + + +++ L + + +++YN Y R + +++ L Sbjct: 65 KQAYRDHGGELLVKKGT----AVDVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDEALP 120 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + NH+ + + + L + P T Sbjct: 121 TKSLTDLVLVDPAGLDSQYENHSRFYDDWQAHHKLPPVGSPDSGSLVDVSDPTTAPTIET 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 ++ Q D G + S++SPY Sbjct: 181 EMDLPTPGYEGARQRYDDFLTGGIETYNDTRDDMQAAVERPT---------SAVSRMSPY 231 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G++ R+ W + + + + EL WRE HL+ + P + + + Sbjct: 232 LAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWREQSYHLLYYNP-TLLSENYK 290 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + +IEW D +AWK G TG+P IDA MRQL G++HNR R ASFL K LLVD Sbjct: 291 TFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGYIHNRPRQNVASFLTKHLLVD 350 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G +F +L+D D A+N WQW ASTG DSV RIF+P Q ++D ++ + Sbjct: 351 WREGARHFRKRLVDHDPANNAASWQWTASTGTDSVD-VRIFDPVAQMSKYDSGADYVTEY 409 Query: 429 LPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +PEL VP+ I + ++ +L+ +Y PIVD A + A Sbjct: 410 VPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAAYERAQRVFETA 460 >gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium ATCC 33035] Length = 477 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 47/481 (9%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQS 58 + TAM+ L+W R+DLR+ DN+AL A + DA ++AV + P + + Sbjct: 39 RRMTAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATT 97 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + SL + L+ G+ D+ E + + T + + R+Y Sbjct: 98 WWRERSLYALAHDLADHGVELI----RAAGDAREEIPRLAAELGATTVTWTRRYHGPLRE 153 Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 D +++ L + S L+ P + N Q YKV+TPF KA V D Sbjct: 154 VDATVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQ-VAGDEPEG 212 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + P + + P + + + Y E+RDIP Sbjct: 213 VPEMGASASSASAWPKPTEPAWAASLAEHWTPG----EAGARERLAQLDLANYAEERDIP 268 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 A+ TS LSP+L G +SPR+ W + A + +EL+WR+F H + Sbjct: 269 ALNATSLLSPHLRFGEVSPREVW---------FAAAEEPEAAKFHSELLWRDFAWHRLYH 319 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P++ ++ +W+ D L+ W+ G TG P++DA MR+L G+MHNR+RM+ Sbjct: 320 LPNLATENV-REKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVV 378 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL K+L + WR+GEE+F L+D D ASN WQW A G+D+ P+FRIFNP Q KR Sbjct: 379 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKR 438 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FDP G ++R W P L+ PIVD +++ L+ Y Sbjct: 439 FDPDGEYVRRWAPALSA-----------------------PPIVDLQESRQAALDAYAEI 475 Query: 478 K 478 K Sbjct: 476 K 476 >gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 470 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 211/472 (44%), Gaps = 21/472 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TDN + A ++ VFI PE + A + ++ + Sbjct: 7 ILWFRRDLRLTDNPMVREAAATG-RPLVPVFILDPE---TERLGAAPKWRLGLAVEAFAQ 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + G + ++E L + + ++R E RD+ ++ L+ + Sbjct: 63 ALERLGSRLILRRGP----ALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLT 185 I +S L P + Y+V+TPF K++ V A + + + Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + R + + +GE A L +F V Y RD TS+L Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +S R W+ + GA +L EL+WREF HL+ P + Sbjct: 239 SENLTYGEISARTIWHAGLRARAEGRA----GAEKFLQELVWREFAWHLLYHTPEIASRN 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W D+ + W++G TG P +DAAMR+L G MHNR R+I S+L K L Sbjct: 295 W-RGEWDAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L DWR+G+ +F L+D D ASN GWQW A +G D+ PYFR+FNP Q ++FDP G + Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413 Query: 426 RHWLPELNNVP-TQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474 R ++ EL+ P + + + L+ + YP P+V + L Y Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQCYPRPVVGLAEGRARALAAY 465 >gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis] gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis] Length = 532 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 191/498 (38%), Gaps = 36/498 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL + + A V +F+ P + A + F+ SL Sbjct: 9 IHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + K+L + + ++ + + V L + E V+RDK ++ Sbjct: 69 LDLDKNLKELNSRLYIVR----GKPVDIFPNLFDRWNVELLTFETDIEPYAVKRDKAVQD 124 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----------ALIQNLVQADLR 175 + S + I+ T + ++ + Sbjct: 125 IAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRLPNG 184 Query: 176 SLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P+ G P P + FP GE+ AL L ++ + Sbjct: 185 VQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDEHWVASF 244 Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 ++ A T+ LSPYL G LS R RL E + K S + +L+WR Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRLHEI-LKRHPKHSKPPVSLVGQLLWR 303 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E + + A + +I W + L AW G TG+P IDA MRQL GW Sbjct: 304 E-FYYTAAAVEPNFDRMLGNVYCLQIPWQERPDHLDAWAHGRTGYPFIDAIMRQLRQEGW 362 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G+ F LLD D A N G W W +++ YFR Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMWLSASAFFHQ-YFR 421 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +++P GK+ D G +IR ++PEL P I+ P L ++YP IV Sbjct: 422 VYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLGIDYPHRIV 481 Query: 462 DHKKACHHTLNQYYAAKK 479 +H + + AA K Sbjct: 482 NHDIVHKENIKRMSAAYK 499 >gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis] gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis] Length = 557 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 117/492 (23%), Positives = 184/492 (37%), Gaps = 30/492 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69 + R LR+ DN L A SD V V+I + +++ +F S+ + Sbjct: 6 IHIFRKGLRLHDNPTLVTALETSDV-VYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDLH 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + Q D L + + +T++ ++ + E D+ + Q Sbjct: 65 CNLQKLNSCLFVIQ----GDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQE 120 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV-----------YTPFRKALIQNLVQADLRSLP 178 + L + + + D Sbjct: 121 LGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKCI 180 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---NALHILRKFCKEKVYYYVEQRD 235 P P + L K + + Sbjct: 181 TPTKLAAEEYYRIPKPEDLGISKDCPTNWIGGESEALSRLEQHLEKQGWVANFKKPQTIP 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + T+ LSPY S+G LS R ++RL + S +L+WREF+ + + Sbjct: 241 NSLLPSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSKNHSLPPV-SLQGQLLWREFF-YTV 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A P +I+W K+ LQ WK+ TGFP IDA M QL+ GW+H+ R Sbjct: 299 ASSTPNFTHMVGNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARH 358 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL + W G + F LLD D N G W W +++ Y RIF P Sbjct: 359 AVACFLTRGDLWISWEEGMKVFEEFLLDADYCINAGNWMWLSASAFFH-HYTRIFCPVRF 417 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468 GKR DP+G +IR +LP L N P +YI+ P + ++ + +YPLP+VDHK A Sbjct: 418 GKRSDPEGNYIRKYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTASE 477 Query: 469 HTLNQYYAAKKQ 480 H L +++ Sbjct: 478 HNLQLMRQVREE 489 >gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex] Length = 553 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 111/493 (22%), Positives = 184/493 (37%), Gaps = 32/493 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LR+ DN +L + +FI P + + F+ SL + + Sbjct: 14 VHWFRKGLRLHDNPSLKDGLKGC-STYRCIFILDPWFAGSSNVDINKWRFLLESLEDLDQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + L + T L + E RD+ + + Sbjct: 73 NLRKLNSRLFVIRGQPAG----VLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCKDF 128 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S P I+ + + +I ++ + + T Sbjct: 129 NIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGRGYT 188 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 P + + ++ ++ GE AL L + + K + R Sbjct: 189 PMDESMDDRFSVPTLEELGFDTDGLMPAVWHGGETEALTRLERHLERKAWVASFGRPKMT 248 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q + LSPYL G LS R +L + + S +++WREF+ Sbjct: 249 PQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKKIKKAQ--PPLSLHGQVLWREFFYCA 306 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+ P +I W+ ++ L W G TGFP IDA M QL GW+H+ R Sbjct: 307 ATNNPNFDKM-IGNPICVQIPWDSNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL + W G + F LLD D + N G W W + + +F + P Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMWLSCSSFFHQ-FFHCYCPVR 424 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G++ DP G FI+ + P L N P QYIH P + + K + +YPLP+V+H + Sbjct: 425 FGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVS 484 Query: 468 HHTLNQYYAAKKQ 480 + + ++ Sbjct: 485 QLNIERMKQVYQR 497 >gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 504 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 164/502 (32%), Positives = 216/502 (43%), Gaps = 45/502 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLR+ DN L AA + A V VF+ P ++ + F+ SL ++ + Sbjct: 11 LFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWFLAESLRELAE 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 G + D L R L +NR E RD+ + LQ Sbjct: 70 RWRAAGSRLLVLR----GDPAVVLPQLAAALRAPVLAWNRDVEPYGRERDRRVAAALQAE 125 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN----------------LVQAD 173 D L + P ++ Y+VY PF + V A Sbjct: 126 GRRVLVDWDQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGSAAAGGLEPVAAP 185 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---- 229 + L + P P A P A + + Sbjct: 186 TGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCRPGEAAAQEQLQA 245 Query: 230 -------------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-K 275 Y + R++P GTS LS L G LSPRQ W ++ + Sbjct: 246 FCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQQARALARSTEAE 305 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 W EL WREFY+ + +P + G P+ P ++ W D +AW+QG TG PI Sbjct: 306 QSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRFEAWRQGLTGMPI 364 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DAAMRQLN GWMHNR RMI ASFLVKDL+ DWR GE FM+QL+DGDLA+NNGGWQW+ Sbjct: 365 VDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDGDLAANNGGWQWS 424 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455 AS+G D P RIFNP Q +FDP+ ++IR WLPEL +V T + S Sbjct: 425 ASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADL---ISGAIPPLERRG 480 Query: 456 YPLPIVDHKKACHHTLNQYYAA 477 YP PIV+HK Y A Sbjct: 481 YPEPIVEHKIQQARFKALYAAL 502 >gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays] gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays] Length = 699 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 140/504 (27%), Positives = 226/504 (44%), Gaps = 32/504 (6%) Query: 1 MKAT-TAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52 M A+ ++MS +VW R DLR+ DN A AA + +V+ ++ PE+ + Sbjct: 1 MSASQSSMSGAGEPGARAVVWFRRDLRVEDNPA-LAAAPRAAGEVVPAYVWAPEEDGPYY 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 ++ SL + SL + G + S D++ L T LF+N Sbjct: 60 PGRVSRWWLSQSLKHLDASLRRLGACRLVTRRSS---DAVVALIDLVRSTGATHLFFNHL 116 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170 Y+ + RD ++++L I ++ L P +L+ + + ++ PF + Sbjct: 117 YDPLSLVRDHRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPD 176 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEK 226 A P P + F D + + + G QNA L F Sbjct: 177 PAAPLLPPKRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGP 236 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282 + Y R TS LSPYL G LS R+ +++++ + D + +L Sbjct: 237 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFL 296 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + RE+ R+L +P KP + W + + W+QG TG+P++DA MR+ Sbjct: 297 RSIGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 355 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 356 LWATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 415 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L NY Sbjct: 416 RELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 475 Query: 457 PLPIVDHKKAC---HHTLNQYYAA 477 PLPIV+ A L++ + Sbjct: 476 PLPIVELDAAKGRLQAALSEMWQL 499 >gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium spiritivorum ATCC 33300] Length = 437 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 226/476 (47%), Gaps = 49/476 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63 +A+ + W R DLR+ DN AL+ A +S+A V VFI R + + FIY Sbjct: 2 SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q+ L G + + + D + + + ++ N YE + RD L+ Sbjct: 61 QLQLLQEQLKPYGSSIK----TYYGDPATVWEEIYEEYKPAAVYVNSDYEPAAITRDLLI 116 Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181 + LQ + +F D V+ I+ + Y VYTP++ + L + L S Sbjct: 117 QGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEEKLPLPSYNSEN 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 + +P D F FP K + Y + RDIP+ Sbjct: 177 LLNNLRQADYTLPSLQDLGFSLSTIPFP----------EKTFFTGIADYADTRDIPSLEN 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS L +L G +S R+ R S ++L+EL+WREF+ + +P Sbjct: 227 GTSHLGVHLRFGTISIRKLVERA----------YPSQNKTYLHELVWREFFMMCLWHFPH 276 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TASF Sbjct: 277 -TVNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPTIQ K+FDP Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +I+ W+PE + YP PIV+H A L +Y A Sbjct: 396 KFVYIKKWVPEFQDFS-------------------YPSPIVEHAWARDRALARYKA 432 >gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC 13032] Length = 468 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 209/497 (42%), Gaps = 61/497 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S L+W R+DLR++DN AL A + VI +FI I A + SL Sbjct: 7 SPTLLWFRDDLRLSDNAALKWAADH--GPVIGLFIDETI---NRSIGAAARWWREQSLNA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS G+ + +E L + V + +NR+Y D L+K L Sbjct: 62 LAQDLSFYGVPLLRRT----GNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 117 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAI 182 + + I L P + YKV+TPF KA + + + ++PVP+ Sbjct: 118 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSH 177 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 I + + E + Y + RD A T Sbjct: 178 LTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSAT 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LS +L G +S + W + G +L EL+WR+F H + P + Sbjct: 238 SKLSAHLRFGEISIHRVWAETAAIDSE-------GTELFLKELLWRDFAWHRLYALPHMD 290 Query: 303 MGKPFIPWTEKIEWN---------------------KDSHLLQAWKQGYTGFPIIDAAMR 341 + + + L AW+ G TG P++DA MR Sbjct: 291 TQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMR 350 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G MHNR+RM+ ASFL K+L + WR GEE+F L+D D ASN WQWAA +G+D Sbjct: 351 ELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDD 410 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFRIFNP Q K+FDP T+IR W+PE + +YP PIV Sbjct: 411 ASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDPIV 451 Query: 462 DHKKACHHTLNQYYAAK 478 D K++ L+ Y A K Sbjct: 452 DLKESRQIALDAYSAIK 468 >gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa HTCC2155] Length = 429 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 143/472 (30%), Positives = 209/472 (44%), Gaps = 45/472 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67 ++ W R DLR+ DN LYAA + KV +FI + ++ + + FI+ + + Sbjct: 2 INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + KG + D E Q R ++ + Sbjct: 61 LDHQIKAKGGS---GIWVYYGDVKETWKEILQSQTGDVYCNRDYEPAAIDRDHEVEQILR 117 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H SF D V+ +L Y VYTP+RKA L+ P Sbjct: 118 SHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAWELKFSPEMLKPFPSDLKNNYDT 177 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 IP + F+ + A + + + Y RD PA+ TS LS Sbjct: 178 SPSKAIPSLEEMGFEE---------KKAHEGNKNLNTQLLLNYSVDRDFPALNATSLLSV 228 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 L G +S R + ++L+ELIWREF+ ++ +P + F Sbjct: 229 QLRFGAISIRHLAKQALNLDS-----------TYLHELIWREFFMMILYHFPHSAKQE-F 276 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 ++ W D + W G TG+P++DA MR+LN G+MHNR+RM+TASFLVK LL+ Sbjct: 277 KEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFLVKHLLI 336 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GEEYF +L+D D+++N G WQWAA G D+ PYFR+FNPT Q +RFD Q +I+ Sbjct: 337 DWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQEEYIKK 396 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 W+PE N + YP P++DHK A + Y A K Sbjct: 397 WIPEYNTM-------------------LYPEPMIDHKFARERAIETYKKALK 429 >gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018] Length = 450 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 208/468 (44%), Gaps = 25/468 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLRI DN+ L A +V+ +FI + ++ FIY S+ +++ Sbjct: 3 QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L G+ FD + ++ + Sbjct: 59 EDLKSIGLDLAIF----FDTPKNVFTKLKKEN------FDEILVSVDFDNYAKKRDEEVE 108 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 ++I L I+ + Q ++ L Q++ A + Sbjct: 109 KIIPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNYLEPLHQSNHIEEFKTATNIKKINF 168 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + I+ P + L +K+ Y + RD + S LS +L Sbjct: 169 DYDFFPTLQ-DLGFIEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDAGSNLSVHL 227 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G++S + +N++K+ ++ ELIWREFY +++ +P Sbjct: 228 RFGLISAKMVFNKIKKLQAPKKEI-----DFFIRELIWREFYNYILFHFPKSQFENLNGI 282 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + + W +G TG PIIDA+M+ LN G MHNRLRMI AS+LVK+LL+DW Sbjct: 283 EVNWNE---NEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + GEEYF +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + FI+ L Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +L ++PT+ IH + ++ L+YP IV + + ++ A Sbjct: 400 KDLKDIPTKQIHT--ENGIQENIFLDYPKQIVGINYSRDRAILEFKRA 445 >gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans] gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans] Length = 574 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 150/511 (29%), Positives = 231/511 (45%), Gaps = 36/511 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52 + A +S + W R DLR+ DN AL A DA++IA++ WR H Sbjct: 65 LPAKADISAVVHWFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHL 124 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCL--QQRV 103 S + F +L +++ L Q + + S + ++W+ C+ Q Sbjct: 125 DSGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGN 184 Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + N QYE +E+ RD L + + + + D ++ PGS+ Y V+TP+ K Sbjct: 185 VLVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYK 244 Query: 164 ALIQNLVQADLRSLPVP-------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210 ++ L + + + P ++ Sbjct: 245 RWVEYLKSHKQGKEAIKIHAVDQESKVNESLAKFESEAYELSDEFLAYLPCDKLEVPPAT 304 Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD- 269 + + Y E++D ++ TS LS Y++ G++S R+ NR E D Sbjct: 305 EADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGDS 364 Query: 270 ---LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 IK + +++ E+ WR+FY+H+M +P + M T I+W D W Sbjct: 365 LMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSKW 424 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 G TG P++DA MR+L G++ NR RMI ASFL K+LLVDWR GE +F LLD DLA Sbjct: 425 CLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADLA 484 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN GGW + +STG D+ PYFRIFN +Q +R+DP G F++ W+PEL + I Sbjct: 485 SNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRI--IREG 542 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 + D YP PIVD K + L + A Sbjct: 543 RSEKDAVDGYPSPIVDLKDSRERALEAFREA 573 >gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti] gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti] Length = 545 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 113/515 (21%), Positives = 200/515 (38%), Gaps = 45/515 (8%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60 M+V+ ++W R+ LR+ DN +L A N ++ +FI E + + F Sbjct: 1 MTVNNILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + + L + G + +++ + + + KL + + E RD Sbjct: 61 LLESLADLDRQLREIGGQLYVFK----GNAVNVMRRLFEELNIRKLCFEQDCEPIWKARD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++ + + S L + T +++ R + P Sbjct: 117 DAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAP 176 Query: 181 AIRLTG------------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 + ++P + +++ + GE AL L Sbjct: 177 SFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHR 236 Query: 223 CKEKV------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---QCWNRLKEEFVDLLIK 273 K++ Y+ Q + + +S L G LS R C + L E+ Sbjct: 237 LKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQY 296 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 G +LIWRE++ + P + + L WK+G TGF Sbjct: 297 RNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDSLDRWKEGRTGF 356 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGW 392 P+IDAAMRQL GW+H+ LR ITA+FL + + W G ++F+ LLD D + G W Sbjct: 357 PMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNW 416 Query: 393 QWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-- 449 W +S+ + + +P +R DP+G ++R +LPEL N+PT Y+H P Sbjct: 417 MWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDVQ 476 Query: 450 ----NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP P++D A N + +++ Sbjct: 477 KECGCIVGRDYPAPMIDLAAASRANANTMNSIRQK 511 >gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens] gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens] Length = 557 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 121/494 (24%), Positives = 208/494 (42%), Gaps = 50/494 (10%) Query: 4 TTAMS------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------H 51 + M+ + +VW RNDLRI+DN+AL A +S A V+ +++ P + Q Sbjct: 54 KSKMTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFP 112 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 ++ FI S+ ++ +L Q+G+ Q + + S ++ +++ Sbjct: 113 KTGELRAQFIMESVANLRDNLRQRGLDLIVRQ----GKPEDVVPSIAKSIGAHTVYAHKE 168 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E + +++ L + + G L H + + Q Sbjct: 169 TCSEETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKG 228 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PIGEQNA----- 215 + PA+++ + P P P+G + Sbjct: 229 VEYNCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMHFEGGET 288 Query: 216 ----LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 + K+++ Y E R+ + +++ SP+L+ G LSPR + +K + Sbjct: 289 AALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETER 348 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + + L ELIWR+++R + Y + W+++ L +AW++G Sbjct: 349 VAND--STYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELFEAWREGR 406 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P+IDA M++L G+M NR R I SFLV+DL +DWR+G E+F + LLD D SN G Sbjct: 407 TGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYG 466 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W + A GND R F+ Q +DP+G ++ HWLP L P + + P Sbjct: 467 NWTYGAGVGNDPRE-DRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFP------- 518 Query: 451 DLSLNYPLPIVDHK 464 Y PIV K Sbjct: 519 --GDAYLRPIVPLK 530 >gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 501 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 101/485 (20%), Positives = 191/485 (39%), Gaps = 19/485 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW + DLR+ D+ L HN ++ ++I P+ S R F+ SL+ +Q Sbjct: 7 IVWFKRDLRLRDHAPLCRVMHN-PRPILLLYIFEPDLIHDPHYSERHWRFVVQSLVDLQA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 LS+ Q D+ Q + ++ + + I ++ H+ Sbjct: 66 QLSEFQTQVLVLQ----GAVQTVFDTLLSQCDIGNVYSHEEIGIELTYVRDRAMQQYFHQ 121 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 K + + + + + K + A +LT Sbjct: 122 HHIKWTETPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVSQTMVEQLTHQALA 181 Query: 191 SNIPRFFDYPFQAIDPMFPIG---EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P F IG + + K Y + + ++LSP Sbjct: 182 IQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISSPELSRKSCTRLSP 241 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM---G 304 Y++ G ++ +Q + +L K + ++ L W + ++ M Sbjct: 242 YIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHWHCHFIQKFESECAMEMRPVN 301 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + +I+ + S L+AWK G TG PI+DA MR + G+++ R+R + S L Sbjct: 302 HAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGYINFRMRAMLVSVLSHH 361 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +DWR+G ++ +Q LD + + +Q A G R++NP Q + DPQG F Sbjct: 362 FNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQA--GVTGTNTIRLYNPIKQSQEKDPQGRF 419 Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKNDLSLN----YPLPIVDHKKACHHTLNQYYAAK 478 I+ W+PEL P +H P S +++ ++ YP P+VD + A ++ ++ + Sbjct: 420 IKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVVDIEDAAKMARDRLWSFQ 479 Query: 479 KQSLL 483 K+ + Sbjct: 480 KRPDV 484 >gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1] Length = 465 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 135/495 (27%), Positives = 206/495 (41%), Gaps = 54/495 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +VW R+DLR+ DN AL A D +A+++ E +++ SL Sbjct: 1 MKPSIVWFRDDLRVADNPALRA--AVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + G+ + + + L L++NR+Y E D ++ Sbjct: 59 ALRGDLDKLGVPLLLRRGP----ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVP 180 + S + L P + YKV+TPF + + + L + Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAVPEAGHGFTG 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + M+ G L +F + + Y E R+ P Sbjct: 175 KLPVYDQLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTD 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G+S LSPYL G LSP + W+ L + + + +EL WREF H P Sbjct: 235 GSSCLSPYLRWGELSPFEVWHALGSKRSESASI-------YASELGWREFCWHQYFHNPQ 287 Query: 301 VCMGKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPIIDAAMRQLN 344 + + +AW+QG TGFP++DA RQL Sbjct: 288 LATANLRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQLW 347 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNR+RM+ ASFLVK+L + W++GE++F L+D D ASN WQW A +G D+ P Sbjct: 348 HTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADASP 407 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 +FRIFNP Q +FDPQG +I HWLP+ + YP IVD K Sbjct: 408 FFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIVDLK 448 Query: 465 KACHHTLNQYYAAKK 479 L Y ++ Sbjct: 449 TTRAEALEAYKEMRE 463 >gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 450 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 221/475 (46%), Positives = 301/475 (63%), Gaps = 25/475 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN A AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLA-AAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ F+ SIE + + C Q V+ + + R + + Sbjct: 59 -LQTALAEKGIPLLFHEV-AFNASIETVKNVCRQHDVSHFYNYQYEFNERQRDRAVEKL- 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + D ++ + +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 116 ---PSVICEGFDDSVILAPGAMTGNHEMYKVFTPFKNAWLR-LKEDIPPCVPAPKIRVSG 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 TP P +YP Q D +FP+ E + LR+FC + Y + RD PA+ GTS+L+ Sbjct: 172 LSTP-LTPVSLNYPQQEFDALFPVEENAVIAQLRQFCAQADEYALR-RDFPAVDGTSRLA 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G LSPRQC +RL + L P S WLNELIW EFYRHLM +YP++C +P Sbjct: 230 -SLATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQP 284 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F WT+++ W ++ H QAW+ G TG+PI+DAAMRQLN G MHNRLRMITASFLVKDLL Sbjct: 285 FR-WTKRVAWQENPHYFQAWQ-GETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDLL 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 + WR+GE YFMSQL+DGDLA+N GGWQWAASTG D+ PYFR FNPT QG+RFD G FIR Sbjct: 342 I-WRLGERYFMSQLIDGDLAAN-GGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFIR 398 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 LP L ++P + IH P W K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 399 Q-LPALRDIPGKAIHEPWRW-AKAGVVLDYPRPIVEHKQAR-ATLSAYEAARKGA 450 >gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11] Length = 478 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 150/476 (31%), Positives = 229/476 (48%), Gaps = 25/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR++DN AL AA +S A V+ VFI + + A + L + + Sbjct: 12 IWWIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDS---QDEDLGAAPRFRLGLGLEHLAQ 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G + +++ L + + + R Y+ RD L+++ L+ + Sbjct: 68 RLERLGSRLILRR----GSALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQ 123 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185 + S+ ++L P ++ MY+VYTPF +A+ V A + Sbjct: 124 GVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAPEQWPNS 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE+ A L +F + + Y + RD+PA+ GTS L Sbjct: 184 DQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLRDLPAVDGTSGL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SP++ W+R E GA ++L E++WREF HLM P + Sbjct: 244 SENLAWGEISPQRMWHRGAEAMAQGAA----GAETFLKEVVWREFAYHLMFHTPHILTKS 299 Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W N+D+ + AWKQG TG+ +DAAMR+L G MHNR RMI ASFL K Sbjct: 300 WREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVASFLTKH 359 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L WRIG+++F L+D D ASN GWQW A +G D+ P+FR+FNP Q +FDP+G + Sbjct: 360 MLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKFDPKGRY 419 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 W+ E N P A P SW D++ P PI+D K L Y+ Sbjct: 420 QAQWIAEGNPKPPDTARAFFTACPKSWQLSADMAR--PRPILDLKAGRERALEAYH 473 >gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117] Length = 464 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 138/489 (28%), Positives = 212/489 (43%), Gaps = 43/489 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + + L+W R+DLR DN AL +A VIAVFI + + ++ Sbjct: 1 MNQSPLPLQLMWFRDDLRTADNPALSSALAA--GPVIAVFILDQQSPGIRPLGGAAKWWL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + L ++ +L GI + + + Q + +NR+Y E D Sbjct: 59 HHGLKSLRAALEDLGIPLVLRKGP----ADSIMTELARQTNAQAVHWNRRYGQPERAVDT 114 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----- 175 + L+ +S+ ++L P +L YKV+TPF AL + ++ L Sbjct: 115 RAKTALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRPPLPAPLGQ 174 Query: 176 -SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + I + + + + GE A H L + Y E Sbjct: 175 DTFSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHH 234 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P + GTS LSP L G L + W+ L + K +GA + +L WR+F HL Sbjct: 235 DRPDLDGTSALSPALRWGHLGAHEMWDALGRLAAE-NPKAGAGATAMRRQLAWRDFCWHL 293 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-----WKQGYTGFPIIDAAMRQLNTIGWM 349 +P + + + A W++G TGF ++DA M+QL GWM Sbjct: 294 YYHHPQLPDRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWM 353 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ AS LVK+L V W++GE +F L+D D+ASN WQW A +G D+ PYFR+F Sbjct: 354 HNRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVF 413 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP +Q K+FDPQG+++ + P L PIVD K++ Sbjct: 414 NPELQAKKFDPQGSYVSQFAP-LAA-----------------------QPIVDLKQSRLD 449 Query: 470 TLNQYYAAK 478 L+ Y K Sbjct: 450 ALDAYDQMK 458 >gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum] gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum] Length = 512 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 115/494 (23%), Positives = 187/494 (37%), Gaps = 33/494 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R LRI DN +L N+ +FI P + + F+ L + Sbjct: 7 VHWFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSDLDN 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + E L Q T + E RD+ ++ Sbjct: 66 SLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSEL 121 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I S I+N + + +++ + + + L T Sbjct: 122 GISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGNAFT 181 Query: 190 PSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 P+ + ++ ++ GE AL L+ + K + + Sbjct: 182 PTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAFIASFGKPKM 241 Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 Q + L+PYL G LS R ++ L E + + S +L+WR+F+ Sbjct: 242 TPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKKIRKSQ--PPLSLHGQLLWRDFFYC 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ P +I W+K+ L W G TG+P IDA M QL GW+H Sbjct: 300 ASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCIA 358 Query: 354 RMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R A FL DL + W G + F LLD D + N G W W + + + + + P Sbjct: 359 RHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCS-SFYKEFIHCYCPV 417 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466 G++ DP G +IR ++P LNN+P +YIH P + + ++YPLPIV+H A Sbjct: 418 RFGRKVDPNGDYIRRYIPALNNMPNKYIHEPWLAPESIQITANCIIGIDYPLPIVNHINA 477 Query: 467 CHHTLNQYYAAKKQ 480 + + A +Q Sbjct: 478 SKINIERMKLAYQQ 491 >gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45] Length = 475 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 143/488 (29%), Positives = 211/488 (43%), Gaps = 30/488 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ + + + +VW+R DLR+TD+ AL+ A S VI VFI + A Sbjct: 1 MRMSESSPI-IVWIRRDLRLTDHAALHEA-GRSGRPVIPVFIRD---HGVDSLGAAPKWR 55 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L K L KG + E L++ + +++ R Y+ + RD Sbjct: 56 LGQGLGHFAKLLGDKGSRLVLRAGP----AREVLEALIDETAAGAVWWQRAYDPAAIERD 111 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLR 175 ++ L+ R L P ++ YKVY+PF +A+ + V A + Sbjct: 112 TAVKAALKDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLAAPSK 171 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + ++ +GE+ A L F V Y + R+ Sbjct: 172 LTPPESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRN 231 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + A G S LS LS+G +SP QCW+ GA +W EL+WREF HLM Sbjct: 232 LVAEDGCSGLSENLSLGEISPAQCWHAAMRARDAGKA----GAETWAKELVWREFAYHLM 287 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + W + AWK+ TG P +DAA+R++ G MHNR R Sbjct: 288 WHTPHLLEDNWREEWKAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRAR 347 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI AS+L K L+ W+IG ++F L D D ASN GWQW A +G D+ PYFR+FNP Q Sbjct: 348 MIVASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPITQ 407 Query: 415 GKRFDPQGTFIRHWLPELNNVPT-------QYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467 ++FDP +IR W+ E PT I + + YP P+V + Sbjct: 408 REKFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP----YPEPVVSAEDGR 463 Query: 468 HHTLNQYY 475 L Y Sbjct: 464 KAALAAYE 471 >gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1] gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii PYR-1] Length = 442 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 214/448 (47%), Gaps = 29/448 (6%) Query: 32 NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 D +V+A ++ P + R+ ++Y +L ++ +L + +V + Sbjct: 21 EGDGEVLACYVLDPRL--KSSSGPRRLQYLYDALRDLRDNLDGRLLV-------THGHPV 71 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 + + T + + + RRD + L + + ++ P G + Sbjct: 72 QRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALGGVELVATGSPYLVSP-GRVTKAD 130 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 YKV+TPF A + + S P + R P + P D P + P G Sbjct: 131 GTPYKVFTPFFAAWRTHGWRPPAGSGPA-SARWIDPDDVTGGPAAADIPDTGLQLELPAG 189 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 E AL +F ++ + Y E R+ P + TS++S +L G + PR L Sbjct: 190 ETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLKFGAIHPRTMAADLGR------ 243 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWNKDSHLLQAWKQG 329 GA ++L EL +R+FY ++A +P + E + AWKQG Sbjct: 244 ---GEGAQAYLRELAFRDFYASVLAEWPDSAWWNWNTAFDAIEVDDDGDAQKSFAAWKQG 300 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFPI+DA MRQL G+MHNR+RMITASFLVKDL + W+ G +F+ QL+DGD+A+N Sbjct: 301 RTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKDLHLPWQWGARWFLEQLVDGDIANNQ 360 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 GWQWAA G D+ PYFR+FNP+ QGK+FDP G ++R W+PEL +V +H Sbjct: 361 HGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDYVRRWVPELADVDD--VHK-----LD 413 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 D YP PIVDH + L +Y A Sbjct: 414 GDRPDGYPEPIVDHGQERAEALRRYRAI 441 >gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2] gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme). (phrB) [Sulfolobus solfataricus P2] Length = 433 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIKKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++D Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215] Length = 478 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 225/483 (46%), Gaps = 27/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I ++R + F+ SL ++ Sbjct: 7 LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFDENYSHDFNANSR-AWFLANSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + ++ G + D I + +F+N+ E E+ RD ++K L+ + Sbjct: 65 NWNKMGSRLVIEK----GDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKEK 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180 I LL S + +++ ++ Sbjct: 121 NIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIFQFKDIDN 180 Query: 181 -----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 I + + + +P I P P + ++K+Y Y RD Sbjct: 181 KLKENKIINSSDSVLNKFLKNIKFPGSNICPCRPGEVAAESLLKNFINEKKIYSYNSVRD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294 +P+ GTS LS L G +S R+ WN D S +W EL+WREFY+H Sbjct: 241 LPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ ++ W ++ Q W +G TG PI+DAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FDP +I+ W+PEL+ V I + N + NY PIV+H + Y Sbjct: 419 AKKFDPICEYIKSWIPELSKVSNSDI---LNGEISNLENNNYSKPIVNHNIQQRLFKSLY 475 Query: 475 YAA 477 Sbjct: 476 AEI 478 >gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278] Length = 415 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 129/417 (30%), Positives = 199/417 (47%), Gaps = 17/417 (4%) Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 G + + + L + + +++N + R +E L H + Sbjct: 2 QSLGSDLVIRRGP----AAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGV 57 Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG----P 187 + F D +L+ P ++ + +V+TPF K ++ P + Sbjct: 58 ASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPARLPMVPDVTGLT 117 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V + + + GE+ A LR F + V Y RD P I TS+LSP Sbjct: 118 VDDLRLEPTKPDWAGGLRATWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G ++PRQ W+ + + G +L+E+ WREF RHL+ P + Sbjct: 178 HLRFGEITPRQIWHAARFA-AEERPAQAKGIDKFLSEIGWREFSRHLLYNNPDLASRN-L 235 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 P + W +D L AW++G TG+PI+DA +R+L G MHNR+RM+ AS LVK LL+ Sbjct: 236 QPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLI 295 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR GE++F L+D D SN WQW A +G D+ PYFR+FNP +QG++FD G+++R Sbjct: 296 DWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRR 355 Query: 428 WLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 W+PEL +P IH P + L +YP PI+DHK+ L Y + + Sbjct: 356 WVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAYASLR 412 >gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii] Length = 499 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 122/478 (25%), Positives = 210/478 (43%), Gaps = 36/478 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIY 62 V ++W RNDLRI DN+AL+ A +S + V+ V+ P ++ ++ F+ Sbjct: 24 VSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGELRAQFLL 82 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ ++K+L ++G+ + L ++ + E++ +K Sbjct: 83 ESLVDLKKNLKKRGLDLVIRS----GNPEFILPLLVEAVGAHTIYAQEETCSEELQVEKA 138 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++K + + + + + + ++ VYT FRKA+ + LP Sbjct: 139 VKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQTLG 198 Query: 183 RLTGPVTPSNIPRFFDYPFQAI-----------DPMFPIGEQ--NALHILRKFCKEKVYY 229 L + + F GE + K + Sbjct: 199 PLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQRLCEYFWTKNCLRN 258 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR Sbjct: 259 YKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKY-EKERTANNSTYWVLFELIWR 317 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L Y + W++D L +AW+ G TG+P+IDA MR+L G+ Sbjct: 318 DYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMRELYATGF 377 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G W + A GND R Sbjct: 378 MSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 436 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 F+ Q + +DP G+++ HW+P+L +PT H+P + Y IV + + Sbjct: 437 FSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSP---------KVGYLKKIVPLRFS 485 >gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201] Length = 441 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 211/477 (44%), Gaps = 42/477 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +V R+DLR+TD+ AL+ A + + V+ +++ E + +++ SL Sbjct: 1 MTT-VVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + LS+ G+ + + + + + +L +NR+Y E D L++ Sbjct: 59 SLASDLSELGVPLTLRRGP----AGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEW 114 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRSLPVP 180 + S+ S++ P ++ Y+V+TPF +A + A Sbjct: 115 AGENGVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHAD 174 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + +GE+ A L +F E++ Y + RD+PA Sbjct: 175 PAPASEDLVDWELLPTHPDWSGGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARP 234 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS LSP+L G +SP W+ E + +L E+ WREF + + +P Sbjct: 235 ATSGLSPHLRWGEISPYTVWHTALERAENPGK--------FLTEVGWREFSWYNLYVHPD 286 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + D +L AW+ G TG P++DA M +L G M NR+RM+ AS Sbjct: 287 MATENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASL 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K+LL+DWR+GE++F L+D D ASN WQW A G D+ PYFRIFN Q K+FDP Sbjct: 347 LAKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDP 406 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ W + + PIVD K++ H L + + Sbjct: 407 DFVYVDRW-------------------NGRQEGV---EPIVDLKESRAHALELFKSL 441 >gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis] gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis] Length = 524 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 123/486 (25%), Positives = 207/486 (42%), Gaps = 30/486 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54 M + + LRNDLR DN+AL A N+D V+ ++ P+ ++ + Sbjct: 1 MATSKTQKTVICLLRNDLRYHDNEALLWAHKNADF-VLPLYCFDPDHYKTTWRFSLPKTA 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ F+ S+ ++ +L G QC + + + VT + + ++ Sbjct: 60 QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E+ +K L + + I L + + + + ++N Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL------------RKF 222 ++ PV + + +++A + + Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239 Query: 223 CKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + V Y E R+ +++LSP+L+ G LSPR ++R+K+ + + + Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANH--STYWV 297 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 L ELIWR++++ + Y + I + + W D + W +G TG P +DA MR Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGI-MGKSLPWKHDKMTFKLWCEGKTGVPFVDANMR 356 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L GWM NR R ASFL+KDL +DWR G E+F S LLD D+ SN G W +AA GND Sbjct: 357 ELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGND 416 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN 455 R FN QG +DP G +I+ W+PEL +P +H P + +L + Sbjct: 417 PRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELRSSGVELGVT 475 Query: 456 YPLPIV 461 YP PIV Sbjct: 476 YPNPIV 481 >gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4] Length = 433 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 209/474 (44%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+D Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + ++ IH + + K NYP PIVD + + Y +K + Sbjct: 384 VDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRFYEVCRKSKI 432 >gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1] Length = 525 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 124/480 (25%), Positives = 202/480 (42%), Gaps = 36/480 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------------RQHGISARQS 58 +VW RNDLR+ DN+ L A S V+ V+ Q+ + ++ Sbjct: 11 VVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGRPRA 70 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+ ++ L + G E + Q T++F +++ EV Sbjct: 71 RFLIESVDDLRTRLQELGSGLVVRTGL----PEEEVARVAAQVGATQVFAHQEVCSEEVA 126 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 + L+++L+ + ++ + V+T FRK + ++ + + Sbjct: 127 AEHRLKRQLEVPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRVEADMHVRPVVAA 186 Query: 178 PVPAIRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YY 229 P L + +IP P + F GE A L+ + E Sbjct: 187 PARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLPFKGGETAARARLQYYLWESNLLAS 246 Query: 230 YVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ +S+ SP+L+ G L+ R ++ +K + + + EL+WR Sbjct: 247 YKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERTENT--STYWLIFELLWR 304 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R + + + KP + + W +AW+ G TGFP IDA MR+L G+ Sbjct: 305 DYFRFVALQHGTAIF-KPGGVQHKDVPWRHSPADFEAWQNGQTGFPFIDANMRELAKTGF 363 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL KDL +DWR+G E+F + LLD D SN G W +AA GND R Sbjct: 364 MSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAAGVGNDPRQ-GRH 422 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD 462 FN Q K +DP ++ W+PEL + H P + L YP P+VD Sbjct: 423 FNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANIQLGSTYPRPVVD 482 >gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15] gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5] Length = 433 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 206/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCA 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++D Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus str. MIT 9312] Length = 478 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 149/484 (30%), Positives = 221/484 (45%), Gaps = 29/484 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69 L W R DLRI DN+AL A S+A + + +I H SA ++ F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYILDRNY--THDFSANSRAWFLGDSLQELG 63 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G + D + + + +N+ E E+ RD ++K L+ Sbjct: 64 NNWEKMGSRLVIEE----GDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------------QADL 174 + I LL + +++ + + Sbjct: 120 KNIQVIESWDHLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDID 179 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 L + + T + + I P P + + + ++ +Y Y R Sbjct: 180 NKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRPGENGAEILLEKFINEKNIYSYNSAR 239 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293 D+P+ GTS LS L G +S R+ WN + D S +W EL+WREFY+H Sbjct: 240 DLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFYQH 299 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR Sbjct: 300 CLFHFPELEKG-PYRKKWGQFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 RMI ASFLVKDL+ W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q K+FDP +I+ W+PEL+ V + + N NY PIVDH + Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDL---LNGEISNLEKNNYSTPIVDHNIQQRLFKSL 474 Query: 474 YYAA 477 Y Sbjct: 475 YAEI 478 >gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor) [Roseobacter sp. MED193] Length = 470 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 141/483 (29%), Positives = 218/483 (45%), Gaps = 27/483 (5%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M++ ++W R D R+ D++AL+AA NS+ VI V + A + Sbjct: 1 MTLSKPIIIWFRKDFRLADHQALFAAS-NSERPVIPVVVLDEL---TQTYGAAPKWRLSK 56 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 ++ L+Q G + + + L + + +++ R Y+ + + RD + Sbjct: 57 AIEHFADRLNQVGSRLILRRGP----AAQELLALAQETGAGDIWWTRAYDPDAIARDTKV 112 Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178 + L KS+ +L P ++ +KVY+P +A+ + A + Sbjct: 113 KSTLTDAGFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAAPSPAPKFLMA 172 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ P+ + + + + +GE A L +F + Y E+RD PA Sbjct: 173 PETWPVSDPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYKERRDYPA 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LS L+ G + P W+ ++ GA +L EL+WREF HL Sbjct: 233 LNATSGLSENLAWGEIGPATVWHAGLRAHLEGQ----RGAEHFLKELVWREFAYHLAFHT 288 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + W + + + WKQG TG P++DAAMR+L G MHNR RMI A Sbjct: 289 PKITQENWKSQWNDFPWSEHEDEAVLRWKQGRTGVPLVDAAMRELYVTGHMHNRSRMIVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL K +L WRIG+++F L+D D A+N GWQW A G D+ PYFRIFNP Q K+F Sbjct: 349 SFLTKHMLKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKF 408 Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 D + +I+ +L E P A P +W D YP PIV + H L Sbjct: 409 DAEQQYIQRFLAERAPTPGPEALAFFDACPRAWALSKDDP--YPTPIVGLAEGRHRALTA 466 Query: 474 YYA 476 Y A Sbjct: 467 YAA 469 >gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii] Length = 499 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 122/478 (25%), Positives = 209/478 (43%), Gaps = 36/478 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIY 62 V ++W RNDLRI DN+AL+ A +S + V+ V+ P ++ ++ F+ Sbjct: 24 VSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGELRAQFLL 82 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ ++K+L ++G+ + L S ++ + E++ +K Sbjct: 83 ESLVDLKKNLKKRGLDLVIRS----GNPEFILPSLVEAVGADTIYAQEETCSEELQVEKA 138 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++K + + + + + + ++ VYT FRKA+ + LP Sbjct: 139 VKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQTLG 198 Query: 183 RLTGPVTPSNIPRFFDYPFQAI-----------DPMFPIGEQ--NALHILRKFCKEKVYY 229 L + + F GE + K + Sbjct: 199 PLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQRLCEYFWTKNCLRN 258 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + +++ SP+L+ G +SPR ++ + + + L ELIWR Sbjct: 259 YKETRNGMLGADYSTKFSPWLASGSISPRFIHEEASIKY-EKERTANNSTYWVLFELIWR 317 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L Y + W++D L +AW+ G TG+P+IDA M++L G+ Sbjct: 318 DYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMKELYATGF 377 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R I SFLV+D+ +DWR+G E+F S LLD D SN G W + A GND R Sbjct: 378 MSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 436 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 F+ Q + +DP G+++ HW+P+L +PT H P + Y IV + + Sbjct: 437 FSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFP---------KVGYLKKIVPLRFS 485 >gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 429 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 146/433 (33%), Positives = 219/433 (50%), Gaps = 18/433 (4%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 + + ++ FIY L ++++L + G F D + + +F Sbjct: 3 KLKNKNDQRVDFIYQVLQDIKQTLKKYGSDIWIL----FGDPVHEIPKLAESINANAIFV 58 Query: 109 NRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 NR YE V RD ++K+L +SF D VL I+ Y V++P+R ++ Sbjct: 59 NRDYEKYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLE 118 Query: 168 NLVQADLRSLPVPAIRLTGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 L+ + +T + + I + K Sbjct: 119 KLLISGSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEFK 178 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +++ +Y + R+ PAI+G S LS + G +S R+ N + + SG+ SWLNE Sbjct: 179 DRLEHYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNE 232 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWR+FY ++ + V G F + +++ + ++WKQG TGFPI+DAAMRQLN Sbjct: 233 LIWRDFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLN 292 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T G+MHNRLRMI ASFL KDLL+DWR GEEYF +L+D D ++NNGGWQWAAS G D+ P Sbjct: 293 TTGYMHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQP 352 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 +FRIFNP +Q ++FD G FI+ ++PEL+ + IH PH+ +YP PI+DH Sbjct: 353 WFRIFNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTP----KDYPKPIIDHA 408 Query: 465 KACHHTLNQYYAA 477 L + Sbjct: 409 TQRPKALKMFEHV 421 >gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 498 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 104/483 (21%), Positives = 168/483 (34%), Gaps = 27/483 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + +VW + DLRI D+ L A V+A+F+ PE SA FI L + Sbjct: 1 MEIVWFKRDLRIRDHAPLADAVAA--GPVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L ++G + + L+ QQ L +++ + Sbjct: 59 HAALQERGGELV----EMTGSAPDMLEQIWQQQPFATLRSHQETGNRASYQRDEQVAAWC 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + A + + + + + + LTGPV Sbjct: 115 RKRGVTWRQSPQNGVIRGQEARAKRDW-IAELDDYSSSEPVKPPRHIVPSKLPPMLTGPV 173 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P IG A R A G S+LSP+ Sbjct: 174 APLQAAGHDKPGRMKGGRAEAIGLLTAFIRTRILRYPYAISSPIT----AEHGCSRLSPF 229 Query: 249 LSIGVLSPRQCWNRLKEE--------FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+ GV++ R+ + + S + + L WR Y M P Sbjct: 230 LAYGVITMREIVLAMNRRVDSAELAVNEAERERLISALRFFADRLRWRAGYFQNMESMPR 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + E D W++G TG+P++DAAM+ L+ GW++ R+R + SF Sbjct: 290 LEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWLNMRMRGMLLSF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 V +L + WR + + +D + A + Q G +NP Q + DP Sbjct: 350 AVNELWLHWREPALFLAREFVDYEPAIHYN--QMQIHAGTAGAGSMLAYNPVKQAQELDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474 +G F+R WLP L VP YI P + + +YP P+VDH A ++ Sbjct: 408 KGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDHLDAARQARSRV 467 Query: 475 YAA 477 A Sbjct: 468 ADA 470 >gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium spiritivorum ATCC 33861] Length = 437 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 219/476 (46%), Gaps = 49/476 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63 +A+ + W R DLR+ DN AL+ A NS+A V VFI R + + FIY Sbjct: 2 SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L +Q+ L G + + + + + + T ++ N YE + RD L+ Sbjct: 61 QLQLLQEQLKPYGSSIR----TYYGEPATVWEEIYEEYTPTAVYVNSDYEPAAITRDLLV 116 Query: 124 EKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181 LQ + + + I+ + Y VYTP++ + L + L S Sbjct: 117 RGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEEQLPLPSYTSEN 176 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 + +P D F FP K + Y + RDIP Sbjct: 177 LLKNLRQASYALPSLQDLGFSLSTIPFP----------EKTFFTAIADYADTRDIPGLEN 226 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS L +L G +S R+ R S ++L+ELIWREF+ + +P Sbjct: 227 GTSHLGIHLRFGTISIRKLVERA----------YPSQNKTYLHELIWREFFMMCLWHFPH 276 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + I W + +AW G TG+P++DA MR+LNT G+MHNR+RM+TASF Sbjct: 277 TVNHAYY-SKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L K LL+DWR GE YF +LLD D ++N G WQWAA G D+ PYFRIFNPT+Q K+FDP Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 Q +I+ W+PE + YP PIV+H A L +Y A Sbjct: 396 QFVYIKKWVPEFQDFS-------------------YPPPIVEHAWARDRALARYKA 432 >gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14] Length = 433 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEEIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++D Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K+ YP PIVD + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group] Length = 697 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 133/482 (27%), Positives = 216/482 (44%), Gaps = 25/482 (5%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 DLR+ DN A AA + +V+ ++ PE+ + ++ SL + SL + Sbjct: 23 RDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRL 81 Query: 76 G-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVIC 133 G + + D++ L T+LF+N Y+ + RD E +I Sbjct: 82 GAGKLVTRRSA---DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIV 138 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 +SF+ +L P +++ Q + ++ PF + LP I + Sbjct: 139 QSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSD 198 Query: 194 PRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 F+ + + + G QNA L F + +Y R TS LSPY Sbjct: 199 DLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPY 258 Query: 249 LSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L G LS R+ ++ ++ + + + +L + RE+ R+L +P Sbjct: 259 LHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP-CSHE 317 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 KP + W + + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK Sbjct: 318 KPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 377 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G +FDP G + Sbjct: 378 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEY 437 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHTLNQYY 475 +R WLPEL +PT++IH P +L NYPLPIV D A L++ + Sbjct: 438 VRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMW 497 Query: 476 AA 477 Sbjct: 498 QL 499 >gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51] Length = 433 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 208/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + L QAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK L++D Sbjct: 266 REYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLIID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K+ YP PIVD + + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLSKRLYEVCRKSKI 432 >gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A] Length = 433 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 208/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+D Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +D + +++ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + ++ IH + + K NYP PIVD + + Y +K + Sbjct: 384 VDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6] Length = 493 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 171/482 (35%), Gaps = 42/482 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +VW + DLR+TD+ L A A +A+FI P R ++ L Sbjct: 1 MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L+ +G+ +++E L + + T+LF + + R Sbjct: 59 PLRDALAARGLPLLVRT----GEAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + ++ + + A Sbjct: 115 WCRAHGVAWTEWPQTGVIRRLKDRRGWAGRWQQRMDAPCVR------VPAGWRAAPGFAP 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P+++P + P GE A +L+ F + Y P A G S+ Sbjct: 169 STLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEAGCSR 228 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LS +L+ G LS R + + + L W + + P++ Sbjct: 229 LSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEPAIEW 288 Query: 304 GKP------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P D LQAW +G TGFP++DA MRQL GW++ R+R + Sbjct: 289 RNFARSADGLRPGDGSALQTADRERLQAWCEGRTGFPMVDACMRQLRATGWLNFRMRAML 348 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SF L + WR + Q LD + + Q +G + RI++P Q Sbjct: 349 VSFAAYHLWLHWREPGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPAKQALD 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DPQG ++R W+PE S YP PIVD + A + Y Sbjct: 407 HDPQGEYVRRWVPEFG-------------------SAAYPAPIVDERAAVAAAKQRLYGL 447 Query: 478 KK 479 ++ Sbjct: 448 RQ 449 >gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4] Length = 482 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 104/472 (22%), Positives = 177/472 (37%), Gaps = 16/472 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ D+R+ D++ LY A + V V++ P W+ +S R HFI SL ++ Sbjct: 1 MNIVWLKRDIRLQDHRPLYEASLRGETLV--VYVVEPSIWKDEPLSMRHLHFILESLEEM 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q S + G + I+ L Q +L+ +++Y + + K Sbjct: 59 QNSFNSIGGKLAVFH----GEMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKDWM 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + + + ++ ++ + Sbjct: 115 EKNGLHWTEYQATAISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAPDKLPSSFIKDLAG 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGT-SQLS 246 P I GE A L+ F E+ +Y + A + S+LS Sbjct: 175 YKKKSQGIKGEP---IRFGQQGGELLAWDTLQTFLDERFVHYETNQMNPLASSISGSRLS 231 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +S R + + +L+ ++ R+ + H Sbjct: 232 PYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRD-FLHQRLIENPTLHQYS 290 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + + N S QG TG PI+DA +R L GW++ R + F+ + + Sbjct: 291 LHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRSLKLTGWLNESTRKMIVMFMCQTMR 350 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 W+ S LD D + QW A T P R+ NP GK DP G F++ Sbjct: 351 QSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSKPP--RVVNPIKIGKEQDPNGEFVK 408 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++ EL VP +YIH P + L YP PIVD K + ++ K Sbjct: 409 RYVQELKTVPVEYIHEPWKYPGVFSLQ--YPAPIVDVVKVNKESRRKFKEIK 458 >gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4] Length = 433 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 135/474 (28%), Positives = 206/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + + + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRRYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIGRARQIDYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + V + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + L QAW +G TG+PIIDA MRQLN G + NR+RM+TA FLVK LL+D Sbjct: 266 REYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K NYP IVD + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432 >gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b] Length = 477 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 157/463 (33%), Positives = 230/463 (49%), Gaps = 25/463 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+TD AA + A ++A+FI + + +++ SL+ + Sbjct: 6 ILWFRRDLRLTD-NLALAAAATTGAPLVALFILDED--DDPPLGGAARWWLHHSLVSLTH 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++G+ + S L + +F++R YE +RRD +E L+ Sbjct: 63 DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVPAIRL 184 + +SF ++L PG I + + ++V+ PF +A A R PA R Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRAAQAIVAPGAPKPAPTRLRAAPAPRS 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PR D+ D P GE A L F ++ V Y RD PA S+ Sbjct: 179 ERLEDWGLTPREPDWAGGLRDAWRP-GESGARARLDAFVEDGVRDYAAARDFPAKDNVSR 237 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G + PRQ W + + P++ ++L EL WREF H++ +PS+ Sbjct: 238 LSPHLHWGEIGPRQVWRAI-----EGADAPRADIAAFLRELGWREFCHHILLDHPSLPEA 292 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + D L +AW +G TG+P +DA MRQL GWMHNRLRMI ASFLVK Sbjct: 293 PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASFLVKH 352 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE +F L+D DL+SN WQWAA G D+ PYFRIFNP +QG+++D G F Sbjct: 353 LLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDADGAF 412 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 +R ++PEL + YIH P + ++ L YPL I+ Sbjct: 413 VRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455 >gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62] Length = 473 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 136/475 (28%), Positives = 212/475 (44%), Gaps = 25/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ D+ AL AA ++ +FI Q + F S+ + + Sbjct: 8 ILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVVEGQGAAPKMRLGF---SVEALDR 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + +++ L + ++++R Y+ RD ++ L+ Sbjct: 64 SLHGTGSRLVLRR----GRALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSALKDD 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPAIRLT 185 + +SF +L P ++ YKV+TP KA+ + A R + Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPVSTPAPNRLEAPQEWPAS 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GEQ AL L F E+V Y RD+P + GTS+L Sbjct: 180 DALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPRVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G ++P CW+ L + A +L EL+WREF HL+ P + Sbjct: 240 SENLTYGEIAPLTCWH----AGWAALNHGDADAEVFLKELVWREFAYHLVHHTPHITTDN 295 Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W ++ AWKQG TG +DAAMR++ G MHNR RMI AS+L K Sbjct: 296 WKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ W+IG ++F L+D D ASN GWQW++ +G D+ PYFR+FNP Q +FD + Sbjct: 356 LMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLDKFDKNREY 415 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 + W+ E + P P W K + +YP P+V + L+ Y Sbjct: 416 VDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAALDAY 468 >gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601] gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601] Length = 473 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 140/478 (29%), Positives = 220/478 (46%), Gaps = 29/478 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW+R DLR++D+ L+ A S VI VFI + + A + L + Sbjct: 8 IVWIRRDLRLSDHATLHEA-GKSGRPVIPVFIRDHTVDQ---LGAAPKWRLGLGLGCFGE 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L++KG + E LD+ + +++ R Y+ V RD ++ L+ R Sbjct: 64 ALAEKGSRLILRAGP----AREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSALKDR 119 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I +SF +L P ++ YKVYTPF +A+ + A + + + Sbjct: 120 EIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPAPSKLAAPESWPES 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + ++P +GE+ A L F K+ Y + R++ A G S L Sbjct: 180 DALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRNLVAEDGCSTL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++G +SP QCW+ GA +W EL+WREF HL+ P + Sbjct: 240 SENLALGEISPAQCWHAAMRAKDAGKE----GAETWAKELVWREFAYHLLWHTPHLAESN 295 Query: 306 PFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W ++ + AWK+ TG P +DAA+R++ G MHNR RMI AS+L K Sbjct: 296 WREEWAAFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRARMIVASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L+ W+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q ++FDP + Sbjct: 356 LMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPITQREKFDPDKVY 415 Query: 425 IRHWLPELNNVPTQ-------YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 + W+ E + P + I + + YP PIV + L+ Y Sbjct: 416 VDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA----YPEPIVSAEDGRKAALDAYQ 469 >gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium MS024-3C] Length = 438 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 211/473 (44%), Gaps = 45/473 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + + W R DLR DN L A S KV+ +FI E + FI L ++ Sbjct: 5 IVIFWFRRDLRYNDNTGLSKALL-SGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEI 63 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + FQ S + + S +V ++ N YE V+RD ++ Sbjct: 64 NQ---HFNTQFQSGVQSYHNSPLNVFKSLLEAANDFKVCGVYTNEDYEPYAVQRDLEIKA 120 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + SF D V+ + + Y VYTP++ + Q + L Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQYPNGFQEIDMPL 180 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + ++ + ++ + +E GTS+ Sbjct: 181 ENLYKMNTSLHDMKALGFSSAEIEVPKYSVTSALIEAYEAKRNFPSIEN-------GTSK 233 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 L P+L G +S R + K + + +L+ELIWREF+ ++ +P Sbjct: 234 LGPHLRFGTVSIRALVQKAKGQKNQV----------FLSELIWREFFMQILWHFPHTPT- 282 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F P ++IEW ++ + WK G TG+P++DA MR+LN G MHNR+RM+ ASFL K Sbjct: 283 NAFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVASFLCKH 342 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q +FD Q + Sbjct: 343 LLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKFDKQHIY 402 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 ++ W+ +L + YP PIVDHK A L Y A Sbjct: 403 LKKWVSDLGEL-------------------TYPSPIVDHKMARERCLATYKKA 436 >gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia tsutsugamushi str. Ikeda] Length = 505 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 132/509 (25%), Positives = 221/509 (43%), Gaps = 47/509 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59 MK + +VWLR +LR+ DNK A +S K+I +FI + R+ Sbjct: 3 MKK-----ISIVWLRRNLRLEDNKPFAEALKSSK-KIIPIFIFDTTILQNFSNPLDRRLS 56 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ ++ + L + + +S+E + + + ++ + +Y+ V R Sbjct: 57 FLANTIYNLNSELQELEGNLLVL----YGNSVEIIPKLIEKLNIQTIYADEEYDPENVIR 112 Query: 120 DKLLEKRLQHR--------------------VICKSFDDSVLLPPGSILNHALQMYKVYT 159 D+ + L+ K + + + + Sbjct: 113 DQKITNLLEFNGKSKLELVCDHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYLRKNCSCIE 172 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 L LV + L +++ S I Y +Q + PI +N L+ Sbjct: 173 RSNYRLDHRLVSLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNN 232 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIK 273 + +++ + +S +SPYL G++S R+C+++ K D I Sbjct: 233 FIQNNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIG 292 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 W++ LI REFY L+ +P+ + + I W KD + + +G TG+ Sbjct: 293 KTEKEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKTGY 352 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P+IDA+++QL GWMHN R I A+F K LL+DWR+GE +F L+D +LASN G WQ Sbjct: 353 PMIDASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGSWQ 412 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453 WAAS G D + R+F P QG++FD + +I+ +LP L NV + IH H S Sbjct: 413 WAASCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVH-------FS 465 Query: 454 LNYPL---PIVDHKKACHHTLNQYYAAKK 479 YP PI+D++ + + N + KK Sbjct: 466 KKYPNYLTPIIDYQLSKDKSSNFFKQIKK 494 >gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 469 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 142/478 (29%), Positives = 211/478 (44%), Gaps = 20/478 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + W+R D RI DN AL AAC S VIA+FI E HG + + + + Sbjct: 1 MKPVIYWVRRDFRIGDNAALSAAC-ASGRPVIALFICD-EVVEGHGAAPKFR--LGEGVR 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +L++ G + D++ L +Q V +++NR Y+ RD ++ Sbjct: 57 VFGAALAEAGSRLILRR----GDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAA 112 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPA 181 L+ I + L P ++ Y+V+TP K + + A Sbjct: 113 LKDDGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDV 172 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + +GE+ A L F E+V Y RD+P++ G Sbjct: 173 WPASDQLDDWKLGGAMRRGRDVLAAHICVGEEAARSRLDTFIDERVQSYQTNRDMPSVDG 232 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LS L+ G +SP CW+ + + EL+WREF HL+ P + Sbjct: 233 TSRLSENLTYGEISPAVCWHAGWAAIHSGKGQA----EVFCKELVWREFAYHLVHHTPHI 288 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W D+ + AWKQG TG P +DAAMR++ G MHNR RMI AS+L Sbjct: 289 VDRNWKEGWDAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGRMIVASYL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L+ W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q +FD Sbjct: 349 TKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDHA 408 Query: 422 GTFIRHWLPELN-NVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476 G + R W+ E P + + L+ + YP P+VD L Y Sbjct: 409 GLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAPSDVYPAPVVDMATGRQRALEAYKD 466 >gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [Nitrococcus mobilis Nb-231] Length = 479 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 136/497 (27%), Positives = 218/497 (43%), Gaps = 32/497 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M T L W R DLR+ D+ L AC + VI VFI P + + A Sbjct: 1 MSNRTP---VLFWFRRDLRLADHPGLV-ACQAARVPVIPVFILDP---QTEALGAAAKWR 53 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ ++ L G + + E L + ++ ++R Y + + RD Sbjct: 54 LGLAIASFRERLQAIGSDLILRRGP----AKETLLELLEETGACEVHWSRNYTPDAIERD 109 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLR 175 + ++ L+ S L+ P ++ A ++VY+P+ +A I +V Sbjct: 110 QEVKTALKRAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVPEIEA 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + + + + +GEQ AL F E Y RD Sbjct: 170 LPAPALWPRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRD 229 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + TS LS L+ G +SPR W+ + + G ++L EL+WREF HL+ Sbjct: 230 RLDLAATSLLSENLTYGEISPRTIWHGVCA----SGGDQEQGGETFLKELVWREFSYHLL 285 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + W D+ W++G TG P+IDAAMRQ+ G MHNR RM Sbjct: 286 YHTPHITQRNW-RAEWNAFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARM 344 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + AS+L K L+ W+IG ++F L+D D A+N GWQW A +G D+ P+FR+FNP Q Sbjct: 345 LVASYLTKHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQA 404 Query: 416 KRFDPQGTFIRHWLPELN-NVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACH 468 ++FDP + R ++ EL + P + A P W + YP P+++ K+ Sbjct: 405 EKFDPDAVYRRRYVAELAGDNPGEAALAYFDACPRHWSLDPE--QKYPEAPLIELKRGRE 462 Query: 469 HTLNQY--YAAKKQSLL 483 L Y Y K + ++ Sbjct: 463 RALEAYQHYVVKNKPII 479 >gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2] Length = 431 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 205/472 (43%), Gaps = 47/472 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A N + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + S + N Y RD+ + K + Sbjct: 63 NDELGKRGSRLYVY----FGLAEEVIKSLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 R + LL + + Y + ++ +Q + + ++ + Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKNYKNFTTFYNAVKNKQVRKPIQNNYTNYYKNSLGDEYEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 PS GE+ K +RD A + LSP+ Sbjct: 177 PPSQ------------------GERGGRKEGLKLIDRAKQIDYSRRDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSVREVYYSLVDNQA------------IIRQLYWRDFYT-LLAYYNERVFYEPLR 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + LLQAW G TG+PIIDA MRQLN G M NR+RM+TA FLVK LL+D Sbjct: 266 REYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+IGE YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +I+ W Sbjct: 326 WKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYIKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + EL + + IH + + K NYP PIVD + + Y K Q Sbjct: 384 VKELEDYDAKIIHNAYKYTLK-----NYPNPIVDWRIRINLAKRLYERCKDQ 430 >gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum] Length = 577 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 122/486 (25%), Positives = 208/486 (42%), Gaps = 48/486 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 V +VW RNDLR+ DN+AL A +S+A ++ V+ P + A ++ FI Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L ++G+ + + S + ++ +++ EV+ +K+ Sbjct: 138 ECLNDLKRNLVKRGLDLLIQH----GKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKM 193 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + LQ V S G+ L D+ + ++ Sbjct: 194 VTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSV 253 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219 V P + + + + Sbjct: 254 EYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHD 313 Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + K+ + Y E R+ + +++ SP+L+ G LSPR + +K + L Sbjct: 314 YFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERLSND--ST 371 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 + L ELIWR+++R L ++ + P I W++D + AW++G TG+P+IDA Sbjct: 372 YWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDA 430 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 431 NMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 490 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 GND R F+ Q + +DP+G F+ +WLPEL +P + H+P Y Sbjct: 491 GNDPRE-DRYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSPGMM---------YLN 540 Query: 459 PIVDHK 464 PIV K Sbjct: 541 PIVALK 546 >gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301] Length = 478 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 218/483 (45%), Gaps = 27/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN++L A S+A + + +I ++R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D + + + +F+N+ E E+ RD ++K L+ + Sbjct: 65 NWKKMGSRLIMEE----GDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I LL + +++ + + + Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180 Query: 191 SNIPR---------------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +P I P P + ++K+Y Y RD Sbjct: 181 KLKENKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETILENFINEKKIYSYDSARD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294 P+ GTS LS L G +S R+ WN D + +W EL+WREFY+H Sbjct: 241 FPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ + W ++ Q W G TG PI+DAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FDP +I++W+PEL+ V + + N NY PIV+H + Y Sbjct: 419 AKKFDPICEYIKYWIPELSKVSNSEL---LNGEISNLEKNNYSSPIVNHNIQQRLFKSLY 475 Query: 475 YAA 477 Sbjct: 476 AEI 478 >gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor] Length = 550 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 121/502 (24%), Positives = 195/502 (38%), Gaps = 37/502 (7%) Query: 12 VWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGI---------SARQ 57 VW R LR+ DN AL Y A S ++ VF+ P R + Sbjct: 12 VWFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAASSPGSARAGVAR 71 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ SL + + + + DD + + + + KL + E + Sbjct: 72 IRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYAL 129 Query: 118 RRDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RDK + I S P I + + Y F + Sbjct: 130 ARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSIAGEPPDPIMEE 189 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEK 226 +P + TG +P + + I + + K K Sbjct: 190 YSELPPLGDTGEYELLPVPTVEELGYVDISEEEIPPFRGGETEALRRMKESLQNKEWVAK 249 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 T+ LSPYL G LS R ++ +++ + + K S + +L+ Sbjct: 250 FEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTKPPV-SLIGQLL 308 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+F+ + P+ K ++I W+++ L AW+ G TG+P IDA M QL Sbjct: 309 WRDFFYTVSYGTPNFDRMK-GNKICKQIPWSENEELFVAWRDGQTGYPWIDAIMIQLRKW 367 Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWMH+ R A FL + D+ + W G + F L+D D A NNG W W + + Y Sbjct: 368 GWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-Y 426 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 RI++P GK++DP G +IRH++P L ++P +YI+ P + + +YP P Sbjct: 427 HRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKANCIIGKDYPKP 486 Query: 460 IVDHKKACHHTLNQYYAAKKQS 481 +VDH+ A + A S Sbjct: 487 VVDHETASKECKKRMGEAYASS 508 >gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1] gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1] Length = 462 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 200/477 (41%), Gaps = 28/477 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL W + DLR+ DN+ L+AA V+ V++ Q + + F+ A + + Sbjct: 1 MHLYWHQRDLRVPDNRGLHAA--TDGDTVVPVYVFDDTVLSQ--VGRPKRAFLAAGVRAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + D+ L + + +F+ Y+ R + L Sbjct: 57 RAAYRERGSDLLVRE----GDAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + L Y ++ F Q + + A+ Sbjct: 113 AAGVDTAGHVDHTLVD---PATLDDAYPSHSQFYDDWQQAPKPDPVPAPDADALADVHDD 169 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT------ 242 ++P P+ G A L F + + Y + RD A Sbjct: 170 HTLSVPAPE-------PPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAPASAV 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPYL+ G + R+ W + + + D + EL WRE HL+ P Sbjct: 223 SRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHTPR-L 281 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + ++ + I W +AW +G TG+P++DA MRQL G++HNR R + ASFL Sbjct: 282 QTENYVSFDAPIAWQNSDDHFEAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVVASFLT 341 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LLVDWR GE +F +L+D D A+N WQW ASTG D+V RIF+P Q ++D Sbjct: 342 KHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTV-AVRIFDPVSQMAKYDSDA 400 Query: 423 TFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 F+ ++PEL V + I + + L+ +Y PIVD A + AA Sbjct: 401 AFVTEYVPELRGVDPETIVDWPTLRHSQRERLAPDYHHPIVDRDHAYERAQRVFEAA 457 >gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp. MED105] Length = 559 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 111/513 (21%), Positives = 192/513 (37%), Gaps = 43/513 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M +HLVWL+ DLR++D+ +AA S+ V+A++ P+ RQ + + F Sbjct: 1 MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVR 118 SL ++ + L ++ + + + +++ + C Q + + + + Sbjct: 61 SLQELAEQLPEQ-VPLLLAKANA-PVALQTMALCCQQISIYSHQETGNWASFVRDKEVKA 118 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + L V + + D Sbjct: 119 WCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDFPQNF 178 Query: 179 --------VPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVY 228 +P ++L + P YP D G Q A L +F E+ Sbjct: 179 QQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLSERGM 238 Query: 229 YYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---------LIKPKSG 277 Y + P A S+LSPYL+ GV+S R+ L + L + K Sbjct: 239 NYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQTQWKQS 298 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW----NKDSHLLQAWKQGYTGF 333 S+ + L W + + P + + +++ AW +G TGF Sbjct: 299 LKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKALAWIEGRTGF 358 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 P++DA MR L GW++ R+R + +F L +DWR + LD + + Q Sbjct: 359 PMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGIHYP--Q 416 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD----- 448 + +G + RI+NP Q K DPQG FIR W+PEL N+P +I P + Sbjct: 417 FQMQSGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTPQLIQQE 476 Query: 449 -KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + +YP P+VD A + +++ Sbjct: 477 CGCIVGEDYPWPVVDPDTAISKARSNITEFRQR 509 >gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis] gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura] gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis] gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 119/514 (23%), Positives = 198/514 (38%), Gaps = 48/514 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA D +I VFI E + + F+ SL Sbjct: 7 NVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L +G + + Q R+ K+ E RD+ Sbjct: 67 LDEQLQSATEGRG-RLFVFE----GEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESA 121 Query: 124 EKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKALIQNLV 170 + I S +PP + + + P R A+ ++ Sbjct: 122 RLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHIN 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------NALHILR 220 A L + G P F+ + + I + + Sbjct: 182 DATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERLKVE 241 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275 + E+ YY Q + + +S +L G LS R+ + + + F ++ + Sbjct: 242 RNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQ 301 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 G +LIWRE++ + P+ + D +LLQ W+ G TGFP Sbjct: 302 IEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENLLQRWRLGQTGFP 361 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 362 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNWM 421 Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 W +S+ + + + P KR DP+G +IR ++PEL N+P +YIH P + Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWRLSAEQQV 481 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D KA + A + Sbjct: 482 KFECLIGVHYPERIIDLSKAVKRNMMAMTALRNS 515 >gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii] gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii] Length = 582 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 145/491 (29%), Positives = 224/491 (45%), Gaps = 30/491 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W R DLRI+DN AL A +++++VF W H S + F+Y + Sbjct: 94 KTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRLTFLYNA 153 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIE-------WLDSYCLQQRVTKL---FYNRQYEI 114 L + K+L + I + + + ++ W CL+ K N +Y Sbjct: 154 LKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTANAEYPT 213 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E+ RD + R F D+ ++ P Y V++P+ K +L+ Sbjct: 214 DELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAHLMDKKP 273 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV----YYY 230 V ++ + A K Sbjct: 274 NDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYLEDGIDK 333 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKSGAFSWLNEL 285 ++DI + +S +S YLS+GV+S R N ++ V K ++ E+ Sbjct: 334 YPEKDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPMEEFIREV 393 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FY+H M+F+P + M PF +E ++W + + W G TG P+IDA MR+L Sbjct: 394 AWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDAIMRKLLL 453 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +STG D+ PY Sbjct: 454 EGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSSTGVDAQPY 513 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FR+FN Q + FDP G FI+ W+PEL + H HS + K +YP IVD K Sbjct: 514 FRVFNMERQSQAFDPDGEFIKRWVPELKD-----AHNVHSLVQKA---KSYPEAIVDLKG 565 Query: 466 ACHHTLNQYYA 476 + L+ Y Sbjct: 566 SRQRALDTYSQ 576 >gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum] Length = 535 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 118/503 (23%), Positives = 202/503 (40%), Gaps = 38/503 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYA 63 + W R +R+ DN A +C ++ K+ ++I P + A + F+ Sbjct: 12 TTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQQ 71 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ + +L + G + E + V L + E RD + Sbjct: 72 SLVDLDTTLRKLGTRLYVIRGL----PHEVFPDLFAKWNVKLLTFELDTEPYARERDNQV 127 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 E+ + + S + ++ A T + + + R +P P + Sbjct: 128 EQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSMPTPRRPIPAPDML 187 Query: 184 LTGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 + + ++ P + ++P GE+ AL L ++ K K + Sbjct: 188 PSECLLDDDLNNPEFDVPTLDELLTLKGFNPAELKPCLYPGGEKEALRRLEEYMKNKTWV 247 Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ + T+ LSPY+ G LS + RLKE S + +L Sbjct: 248 CKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFYYRLKEVI--GNSPHSKPPVSLIGQL 305 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREFY + A P+ ++ W+ + L+AW G TG+P IDA MRQL Sbjct: 306 YWREFYYTVGASTPNFDKM-VGNSICCQVPWDNNPDALEAWTNGKTGYPFIDAIMRQLRD 364 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW+H+ R A FL + DL + W G F LLD D + N G W W +++ Sbjct: 365 EGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMWLSASAFFHQ- 423 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 +FR+++P GK+ D G +IR ++PEL P QYI+ P S + ++YP Sbjct: 424 FFRVYSPVAFGKKTDKSGDYIRKYIPELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPK 483 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 +V H+ + + + A K + Sbjct: 484 RVVVHEDVYKNNIAKMSLAYKST 506 >gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 483 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 101/482 (20%), Positives = 175/482 (36%), Gaps = 25/482 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++++VW + DLR++D++ L AA ++ + F P R FI S+ Sbjct: 1 MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L + D++E L + Q + L+ +++ + Sbjct: 60 DINRKLKAYNTQIYV----TYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQV-- 113 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + P G++ + + + + L DL + Sbjct: 114 --ASWCRQHHVNWFESPTGAVQRGLNSRQQWQKHWYETMKAPLATPDLARIQPVKA---- 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244 + F+ G A L F +++ Y P S+ Sbjct: 168 --VSVDYRTLPKSWFERRPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIRAQHHCSR 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G LS R+C+ ++ + K AF + Sbjct: 226 LSPYLAWGNLSLRECYQATVDKRRETGWKRPLNAFLSRLHWHCHFIQKFESETAMQHAPL 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + L+AW+QG TG+P++DAAMR L G+++ R+R + SFL Sbjct: 286 NRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRMRALLVSFLCHY 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ + + LD + + Q A G R++NP Q DP G + Sbjct: 346 LHIHWQYATTHLAALFLDFEPGIHYPQIQMQA--GIIGTNTIRMYNPEKQAIEKDPTGAY 403 Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I W+PEL +P + HAP+ + L +YP PIVD + Y K Sbjct: 404 IDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVDVDDYRPIARDTLYRIK 463 Query: 479 KQ 480 K Sbjct: 464 KS 465 >gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134] Length = 545 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 96/486 (19%), Positives = 174/486 (35%), Gaps = 24/486 (4%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 T+M +++VW + DLR+ D+ L AA V+ V++ P + + R F+Y Sbjct: 33 KDTSM-INVVWFKRDLRLEDHAPLKAAIE-VGLPVLLVYVFEPSLQQSPDWNIRHWQFVY 90 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + L + + + + ++ K+F +++ I Sbjct: 91 QSIEDLNFELEDYQVKLHCFHA----EVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDR 146 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 ++ + + + N ++ + + Sbjct: 147 QMQQFFEQKDIEWQEFEQNGIQRGRKNRRGWAQDWQI-----FMKEPLATPNLAQLKAMP 201 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ--NALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+G + Y ++ + Q Sbjct: 202 YEVTDFAFLFDYVTGQKIHLYSKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQPALSNQ 261 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL+ G LS RQ + ++ +D ++ ++L+ L Sbjct: 262 SNSHLSPYLAWGNLSVRQVYQHCQQLMID--SPHRANFETYLHHLRMHCQCIQKFE-MED 318 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + ++E N + LL+AWK G TGFP++DA+MR + G+++ ++R + SF Sbjct: 319 YLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIRQTGYLNFQMRSLIVSF 378 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L L W G Y Q LD + + ++ A G +I NP K+ DP Sbjct: 379 LTHHLWQSWHTGVHYLGQQFLDYEPGVHF--VRFQAQAGAVDTHKVKILNPIKVSKKCDP 436 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 + FI+ W+PEL N+P IH K + +YP PI++ H Sbjct: 437 KAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPAPIININATHPHAKAAL 496 Query: 475 YAAKKQ 480 A KK Sbjct: 497 EALKKN 502 >gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25] Length = 433 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL+D Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K NYP IVD + + Y +K + Sbjct: 384 VDELESYDAKIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432 >gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus] Length = 534 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 101/500 (20%), Positives = 189/500 (37%), Gaps = 34/500 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +++W R+ LR+ DN +L++A ++ + +FI E + + ++ +L + Sbjct: 5 NVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALNDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + G + + + L + + E RD + + Sbjct: 65 QQFRKYGGKLLMIK----GRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD 120 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + C+ L P +++ + + ++ + V + Sbjct: 121 IGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + R F +A P I ++Q Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCRG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + + LSP L G LS R+ + L++ F + + +LIW Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIW 300 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE++ + P+ + ++ LQ WK+G TGFP +DAAMRQL T G Sbjct: 301 REYFYTMSVNNPNYAQMSGNPICLDIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTEG 360 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPY 405 W+H+ +R ASFL + L + W G ++F+ LLD D + G W W +S+ ++ + Sbjct: 361 WLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS 420 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 P G+R +P G ++R ++PEL +P +YI+ P + +YP P Sbjct: 421 GECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPAP 480 Query: 460 IVDHKKACHHTLNQYYAAKK 479 +VDH A ++ Sbjct: 481 VVDHTAAAARNRANMQELRR 500 >gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818] Length = 552 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 121/492 (24%), Positives = 203/492 (41%), Gaps = 39/492 (7%) Query: 1 MKATTAMSV--HLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------- 50 M ++++ +V +VW R +DLRI D++ L A S V+ V+ P Q Sbjct: 1 MSSSSSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCG 60 Query: 51 --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 +++ FI + ++++L + G + E + T++F Sbjct: 61 QFPKCGWQRTRFIVECVEDLRRNLQRLGSNLVVR----VGEPEEVIPDIVSITGATEVFG 116 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRK 163 ++ E + L KRL + + L S + + Sbjct: 117 QKEVCSEETGVEHRLAKRLSVPLTLRWGAITLCHRDDLPYERSCSDLPGVFSQFRKAAEA 176 Query: 164 ALIQNLVQADLRSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 + + SL + G P P + F GE A Sbjct: 177 CVPIRPPRPPPPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERGVLTFVGGETVARTR 236 Query: 219 LRKFCKEKVYY--YVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 ++ + + Y + R+ +S+ SP+L+ G +S R + +K + + Sbjct: 237 VKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYERERVKNN- 295 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + + EL+WR+++R + + + + + + I W L AW++G TGFP Sbjct: 296 -STYWLVFELLWRDYFRFVALQHGTAIFKEGGV-QRKGIAWRHSPLDLSAWQEGRTGFPF 353 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 +DA MR+L G+M NR R ASFL KDLL+DWR+G E+F S L+D D +N G W +A Sbjct: 354 VDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDHDPCANYGNWNYA 413 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449 A GND R FN Q K +DP ++ W+PEL ++P + H P+ Sbjct: 414 AGIGNDPRQ-GRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTPYQAPHGELEAAG 472 Query: 450 NDLSLNYPLPIV 461 L +YP PIV Sbjct: 473 VALEKSYPRPIV 484 >gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP 1055/1] Length = 515 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 105/503 (20%), Positives = 185/503 (36%), Gaps = 34/503 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++WL+ DLR+TD+ L A D V +++ P+Q + + F L+ + Sbjct: 1 MDVIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDL 60 Query: 69 Q---KSLSQKGIVFQYHQCSNFD-------DSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +L + +F + I+ L + Q+++ +L + + Sbjct: 61 DTKLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSY 120 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + K + S + Q L Sbjct: 121 ARDKRVR--KWCRDRKIPFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTALECNI 178 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 V + L G + P + GE AL ILR F + + + Sbjct: 179 VIDLELPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGFSKGIS 238 Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 P TS LSPYL+ G +S R L+E L + WL H Sbjct: 239 SPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAFSSRVH 298 Query: 294 LMAFYPSVCMGKPFIPWTE---------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + +P + + + + + QAW G TG+P++DA MR L+ Sbjct: 299 WRSHFIQKLESEPEMEQRDVNAAFQPLRRQPGDWNECYYQAWSTGNTGYPMMDACMRCLH 358 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GW++ R+R + SF +L +DW + LD + + Q +G + Sbjct: 359 RHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYPQIQ--MQSGTTGIN 416 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 R ++ T QGK DP+G F+R ++PEL +VP YIH P + +YP Sbjct: 417 ALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVHIGEHYPA 476 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 PIV+ ++ + A ++++ Sbjct: 477 PIVNEQETAKSAKERIAAVRRRN 499 >gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM 10331] Length = 456 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 219/476 (46%), Gaps = 33/476 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++WLR DLR D+ DA AVF+ P R S + ++ +L ++ Sbjct: 1 MRVLWLRGDLRSYDHAGWSE-LGIGDA---AVFVLDPGLAR--HASPIRRAWLAGALGEI 54 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + + L + T++ ++ RR + L+ Sbjct: 55 DDWTDHRLSLLHARHG-------DELAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R I + D + + PGS+ ++V+ F + P P Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQW------RPAVHGLGPFEATAPP 161 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F + D ++ AL L +F ++ +Y RD PA+ TS+LSP Sbjct: 162 SLAVTERHFEPADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAVAATSELSP 221 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VCMGK 305 L IG + PR L + ++ EL WREFY H + +P Sbjct: 222 ALHIGAIHPRTILAALGDLDRA---------DRFVRELAWREFYAHALWHHPDLVDLELD 272 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P + E ++ +AW G TGFPI+DA MR+L GW+HNR+RMI AS LVKDL Sbjct: 273 PTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRMIVASLLVKDL 332 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR G +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QGK+FDP G ++ Sbjct: 333 HLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQGKKFDPDGHYV 392 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 R W+PEL PT IH P W+ + + YPLPIVDH + L +Y AA+ + Sbjct: 393 RRWVPELRACPTSLIHEPWRWVGRENAG--YPLPIVDHDRERREALARYDAARASA 446 >gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27] Length = 433 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 47/474 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68 L R DLR+ DN L A + + KVI FI P Q S +F+ SL ++ Sbjct: 4 LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L ++G + F + E + + + N Y RD+ + K + Sbjct: 63 NDELRKRGSRLYVY----FGLAEEVIKNLLKDVDAV--YLNEDYTPFSKMRDERIRKYCE 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + LL + + Y + I+ VQ + + ++ + Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKNYRNFTTFYNVVKNKQIRKPVQNNYTNYYKNSLGDEHEL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P GE+ K + +++D A + LSP+ Sbjct: 177 PPRQ------------------GERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLSPH 218 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G LS R+ + L + + +L WR+FY L+A+Y +P Sbjct: 219 LKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPLK 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 IEW + LLQAW +G TG+PIIDA MRQLN G M NR+RM++A FLVK LL+D Sbjct: 266 REYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLID 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIGE+YF S+L+D D + NNG WQW AS G D + FR+F+P Q +DP+ +++ W Sbjct: 326 WRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKRW 383 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + EL + + IH + + K NYP IVD + + Y +K + Sbjct: 384 VDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432 >gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT 9202] Length = 478 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 224/483 (46%), Gaps = 27/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN+AL A S+A + + +I ++R + F+ SL ++ Sbjct: 7 LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFDENYSHDFNANSR-AWFLGNSLQELGN 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + G + D I + +F+N+ E E+ RD ++K+L+ + Sbjct: 65 NWHRMGSRLVIEK----GDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKEK 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180 I LL S + +++ ++ Sbjct: 121 NIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVICQFKDIDN 180 Query: 181 -----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 I + + + + I P P + ++K+Y Y RD Sbjct: 181 KLKENKIINSSDSVLNKFLKNIKFSGSNICPCRPGEVAAETLLKNFINEKKIYSYNSVRD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHL 294 +P+ GTS LS L G +S R+ WN D S +W EL+WREFY+H Sbjct: 241 LPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G PF ++ W ++ Q W +G TG PI+DAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GE+ FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FDP +I+ W+PEL+ V I + N + NY PIV+H + Y Sbjct: 419 AKKFDPICEYIKSWIPELSKVSNSDI---LNGEISNLENNNYSKPIVNHNIQQRLFKSLY 475 Query: 475 YAA 477 Sbjct: 476 AEI 478 >gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 103/482 (21%), Positives = 174/482 (36%), Gaps = 22/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VWL+ DLR+ D+ L AA N + +F P R F++ SL + Sbjct: 6 INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L + + + I L+ ++ +++ + + I Sbjct: 65 QNRLKIREKQLY----AVHQEVITVLEWITDFYQIQQVYSHEEVGIKITFDRDK----AV 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + P I+ K+ + + Sbjct: 117 KKWCTEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLL 176 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LS 246 + GE A + F +E+ Y Q PA TS LS Sbjct: 177 EKFTTAPLPSVIQSYQEGFQRGGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTSCSRLS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +S R+ L + F + L WR + + P Sbjct: 237 PYLAFGCISAREVMQHLDAHLSQSADRWNLNNFR--SRLWWRSHFIQKLE-TDWRVEIAP 293 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P +++ D +AW QG TGFP++DA+MR L GW++ R+R + SF L Sbjct: 294 INPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFATFVLW 353 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR + LD + + Q A G R++NP+ Q + DP G FI+ Sbjct: 354 LDWRPVATHLARLFLDFEPGIHYPQIQMQA--GLTGYHTLRMYNPSTQVTKNDPDGIFIK 411 Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL VP+ + P + +YP+P+VD K ++Y+ ++ Sbjct: 412 KWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYWQIRQS 471 Query: 481 SL 482 Sbjct: 472 PA 473 >gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora] Length = 554 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 145/446 (32%), Positives = 219/446 (49%), Gaps = 21/446 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W + DLR+ DN++L+ A + +I +++ +PE H + + F+ +L Sbjct: 112 VHWFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEI 171 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ L GI +D + R+ K+F ++ Sbjct: 172 LKRDLEALGIPLWIETYE--------VDELRREARLVKIFAEGDEKMVAEVVHDTCVVMP 223 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +V P ++ + + N + + + Sbjct: 224 GALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLPNPPSTKSKYAHLFTCPIPPA 283 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246 N+P + + ++P GE AL L KFC E + Y E+RDIP+++G TS+LS Sbjct: 284 PENKNLPDNDETKARY-RALWPAGEHEALKRLHKFCDENIGKYAERRDIPSVEGGTSKLS 342 Query: 247 PYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 + + G LS R ++ L G W++E+ WREFYRH++ +P VCM K Sbjct: 343 VHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVAWREFYRHVLVGWPYVCMNK 402 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF P I W+ + AW G TG+PIIDAAMRQ+ + G+M NRLRMI ASFL KDL Sbjct: 403 PFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLSTGFMPNRLRMIVASFLAKDL 462 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L+DWR+GE YFM L+DGD ASNNGGW +AAS G D PYFR+FNP +Q ++FD G +I Sbjct: 463 LIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDEGGEYI 522 Query: 426 RHWLPELNNVP-------TQYIHAPH 444 R W+ EL ++ +IH P+ Sbjct: 523 RRWVEELRDLEGGKLGGKGGWIHDPY 548 >gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950] Length = 442 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 211/473 (44%), Gaps = 33/473 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+W R DLR+ D+ +V+A F+ P R+ F+ SL Sbjct: 1 MP-ALLWFRRDLRLRDHP--ALLAAAEAHEVLACFVLDPRLESSS--GQRRLQFLGDSLR 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L + +V + + T + + + RRD+ + Sbjct: 56 RLRADLDGRLLV-------TRGRPDTQIPHIAKEIGATSVHISEDFAPFGTRRDERVRAA 108 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + + ++ P G + Y+V+TPF + + +A S A L Sbjct: 109 LGAVPLVATGSPYLVSP-GRVTKPDGSPYQVFTPFLRQWHKVGWRAPATSGAASAHWLDP 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + GE A + F + Y + R+ P ++GTS++S Sbjct: 168 ARLRVGHCEI---PDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMS 224 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G + PR L GA ++L EL +R+FY ++ +P+ Sbjct: 225 AHLKFGTVHPRTLAADL--------DLRGGGAQAYLRELAFRDFYADVLHHWPASAWRNW 276 Query: 307 FIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + AWK G TGFP +DA MRQL G+MHNR+RM ASFLVKD Sbjct: 277 NKDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVRMSVASFLVKD 336 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L + W+ G E+F+ QL+DGD+A+N GWQW A G D+ PYFR+F+PT QG++FDP G + Sbjct: 337 LHLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQGEKFDPTGDY 396 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IR W+PEL +H L + NYP PIVDH L +Y + Sbjct: 397 IRRWVPELR--SADDVH-----LRRGRRPDNYPQPIVDHAAERAEALRRYQSI 442 >gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii] Length = 559 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 129/510 (25%), Positives = 224/510 (43%), Gaps = 38/510 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ + A +LVW R DLR+ D A N+ V+ +FI P + + + Sbjct: 1 MENSKA--CNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--R 118 + SL+ + SL+ G + + D++ L + T++F N Y R Sbjct: 58 LKQSLIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVAR 114 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ ++ L++ + +F+ L P I + + + F ++ + D+ Sbjct: 115 DRRVKQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSS 174 Query: 179 V-----------------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + + + G ++A L+ Sbjct: 175 QARLFPYREYLDLISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQA 234 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAF 279 F + Y R A TS LSPYL G LS R+ +N + K+ + L P+ A Sbjct: 235 FLVGPLNDYTTSR-ETADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAH 293 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +L + RE+ R++ +P + W D +AWK G TG+P++DAA Sbjct: 294 LFLRAIGLREYSRYISFHFP----FTQEQSLLKNFPWRNDEIHFKAWKLGKTGYPLVDAA 349 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + Sbjct: 350 MRELWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCL 409 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLS 453 D R+ +P +G + DP+G ++R WLPEL+ +P Q+IH P+S +L Sbjct: 410 TDGHELDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELG 469 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 NYP PIVD + A + + ++++ + Sbjct: 470 TNYPKPIVDMEVAKYRLSQAVKSMREKNSV 499 >gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis] gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis] Length = 498 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 114/499 (22%), Positives = 184/499 (36%), Gaps = 39/499 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + W R LR+ DN+ L A SD +F + +S F+ SL Sbjct: 1 MVNSVHWFRKGLRLHDNEPLRRAIEGSDT-FRGIFFLDKAAVKNAKVSPNGWRFLIESLR 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +SL + Q I+ Q ++KL + E +RD +++ Sbjct: 60 DLDQSLQKYNSRLFIIQ----GQPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRI 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + S L + L+M + P + +V+ Sbjct: 116 AEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRK 175 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------ 234 P + + P + R Sbjct: 176 SFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRLGILEDKILGSN 235 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +QLSPYL G LSP+ + +L +V + S +LIW Sbjct: 236 SSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQ--FSPPPMSLYRQLIW 293 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 REF+ L + P++ P +I W ++ WKQG TGFP IDA MRQL G Sbjct: 294 REFFFTLASKNPNMDQVND-NPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKEG 352 Query: 348 WMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--VP 404 W+H+ R+ FL + + W G F LD + + N+G W W + + +P Sbjct: 353 WIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWLSCSAFFHGQIP 412 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 + F P GK+ DP G++IR ++PEL ++P +Y++ P + D + +YP Sbjct: 413 W---FCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPH 469 Query: 459 PIVDHKKACHHTLNQYYAA 477 PIVDH + L + Sbjct: 470 PIVDHIEQRKACLQRLKTV 488 >gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106] Length = 512 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 116/483 (24%), Positives = 204/483 (42%), Gaps = 24/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + ++W R DLR+ DN + A D +++ FI P ++Q I + F++ SL + Sbjct: 1 MQILWFRRDLRLIDNDIVAQAAAT-DEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + +S+E + + + + ++ R +++ D ++ Q Sbjct: 60 DGSLRDLGSRLYLFE----GNSVEVIQTLTGEL-LELGYHPRLVFNRDIQVDYGRKRDHQ 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + L + L + + + A ++ L P I L Sbjct: 115 VIEFYQRLGLNCYLGLNNFLQIEGENREQWMNEYYADLRQPQHPIPTKLKTPEIPLNLTQ 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQL 245 + + +F GE A L + K + Y + P I TS L Sbjct: 175 LTFDELQQKYNFNSQNSALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQIATLGGTSHL 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCM 303 S +L+ G +S RQ + + K +L + S+ N L WR+ + ++P + Sbjct: 235 SAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQRLYYFPELAY 294 Query: 304 GKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + + QAW+QG TGFP++DA+M+QL ++GWM+ R+R + A+ Sbjct: 295 QNCYPEFDKWYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSMGWMNFRMRAMCAN 354 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--VPYFRIFNPTIQGKR 417 FL V W G ++M+ L+DGD+A N+ WQW A G + FRI+NPT Sbjct: 355 FLTVICGVSWHHGARHYMNYLVDGDIAINH--WQWQAQAGVTNPLSSTFRIYNPTKNLTE 412 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP+ F+R W+PEL + + I + YP P++D + Sbjct: 413 KDPKFEFVRDWIPELRDCTDEQI-----LSGEIGELSGYPEPMLDWYEMRKINGKVVSEL 467 Query: 478 KKQ 480 +KQ Sbjct: 468 RKQ 470 >gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 119/486 (24%), Positives = 200/486 (41%), Gaps = 48/486 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 89 VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 147 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L +G+ E L S ++ +++ E+ ++L Sbjct: 148 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 203 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ V+ S S L + L D+ + ++ Sbjct: 204 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 263 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219 + P I+ + + Sbjct: 264 ESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNE 323 Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + K+ + Y R+ + +++ SP+L+ G LSPR + +K + Sbjct: 324 YFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--ST 381 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 + L ELIWR+++R L Y + P + W++D + +AW+ G TG+P+IDA Sbjct: 382 YWVLFELIWRDYFRFLSVKYRNSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDA 440 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 441 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 500 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 GND R F+ Q K +DP+G ++ WLPEL +P + P +Y Sbjct: 501 GNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYIN 550 Query: 459 PIVDHK 464 IV K Sbjct: 551 QIVPLK 556 >gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51] gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51] Length = 504 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFSRLAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17] Length = 500 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 95/483 (19%), Positives = 175/483 (36%), Gaps = 23/483 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++ VW + DLR+ D+ L AAC ++ V+ +++ P Q + +S R FI S+ + Sbjct: 8 INAVWFKRDLRLADHAPLQAAC-HAGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L++ G + + IE L + + LF + + Sbjct: 67 NLQLNRAGC--EAGVALVHGECIESLTRLQQRYSLHTLFSHEETGDASTFERDQQVAHWC 124 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + + N ++ P P Sbjct: 125 QQQDVNWQEFTTNAVIRGVFNRDGWDRHWQQVMGAPQQNADLRQLRVIRPTALPDWQPPS 184 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 F + + + Y I + S+LSPY Sbjct: 185 EWQQANSQFQTGGELAAN--------QWMESFFNARGRFYSGSVSSPIASRTFCSRLSPY 236 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G +S RQ + + + ++ + L W + ++ Sbjct: 237 LAFGNISLRQAYQQYRANRQKAG--WDRSLRAFASRLHWHCHFIQKFESECAMEQRPVNR 294 Query: 309 PW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + L AW+ G TG+P++DA MR L G+++ R+R + SFL L Sbjct: 295 GYLTYPYRTDDGVNADLAAWQDGRTGYPLVDACMRCLQATGYINFRMRAMLVSFLCHLLN 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW+ G + LD + + +Q A G + RI+NP +Q + DPQGTFIR Sbjct: 355 IDWQRGVHHLARLFLDYEPGIHYSQFQMQA--GLTGINTIRIYNPVLQSQEQDPQGTFIR 412 Query: 427 HWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +P +H P +S +YP P+ + A ++ + + + Sbjct: 413 QWVPELAELPDTLLHQPWLLTPMEEQMFDLQISQHYPAPLFELAPAYAAARDRLWDWRSR 472 Query: 481 SLL 483 + Sbjct: 473 PDV 475 >gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 549 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 119/486 (24%), Positives = 200/486 (41%), Gaps = 48/486 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 V +VW RNDLR+ DN+AL A +S A V+ V+ P + A ++ F+ Sbjct: 52 VAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFLI 110 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++++L +G+ E L S ++ +++ E+ ++L Sbjct: 111 ECLADLKRNLMNRGLNLLIQH----GKPEEILPSLAKTFEAHTVYAHKETCSEELNVERL 166 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + L+ V+ S S L + L D+ + ++ Sbjct: 167 VRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSV 226 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-----------------------LHIL 219 + P I+ + + Sbjct: 227 ESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNE 286 Query: 220 RKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 + K+ + Y R+ + +++ SP+L+ G LSPR + +K + Sbjct: 287 YFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQAND--ST 344 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 + L ELIWR+++R L Y + P + W++D + +AW+ G TG+P+IDA Sbjct: 345 YWVLFELIWRDYFRFLSVKYRNSLFH-LGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDA 403 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A Sbjct: 404 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 463 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 GND R F+ Q K +DP+G ++ WLPEL +P + P +Y Sbjct: 464 GNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYIN 513 Query: 459 PIVDHK 464 IV K Sbjct: 514 QIVPLK 519 >gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 40/507 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A +N++ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEAHNNAE-KLITLFIFDETTFNPKWYGYNPMRFLLESLI 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+ G Q + + + + + Y + RD+ ++ Sbjct: 60 DLNNNLALVGGRLYILQ----GNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 I C L P SI+ + + + + V + + Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------------------- 225 P++I F F I + ++ + Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235 Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +Y Q + + S LS L G LS R+ + L + F++ +S + Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +LIWR+++ + + + I+ ++ +L+ WK G TG+P IDA Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDAG 355 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQL GW+H+ +R ASFL + DL + W G +FM LLD D + +G W W +S+ Sbjct: 356 MRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSSS 415 Query: 399 GNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451 + + P G R DP G +I+ ++PEL N+P Q+++ P + Sbjct: 416 TFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGCI 475 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP IVDH A + A + Sbjct: 476 IGKDYPNCIVDHTIASKGNRKKMLALR 502 >gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TMA 21] Length = 504 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52] gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587] gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395] gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC27] Length = 504 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2083] gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium HTCC2083] Length = 473 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 224/476 (47%), Gaps = 25/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR++D+ AL AAC ++ VIAVFI G+ A + +L + Sbjct: 8 IVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDDIV---DGLGAAPKWRLGKALEVFTQ 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQH 129 +L++ I + + + LD+ + ++++R Y+ V RD +++ L Sbjct: 64 TLARLNIPLILREGP----AGDVLDALITETDAQGVYWSRLYDPACVTRDTVIKADLLSK 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIRLT 185 + +SF ++ P ++ MYKVYTPF +++ V P + Sbjct: 120 GLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPLAVPTSVQPYEGHLES 179 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L F + V YVE+RDIP+ +GTS L Sbjct: 180 ADQSDWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPSTRGTSGL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++G +SP QCW+ + + +L EL+WREF HL P + Sbjct: 240 SENLALGEISPHQCWHAGMRALHEGKD----DSEVFLKELVWREFAYHLTHHTPHILDSN 295 Query: 306 PFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W + H AWKQG TG +DAAMR++ G MHNR RMI AS+L K Sbjct: 296 WKSDWDKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIVASYLTKH 355 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q +FD + + Sbjct: 356 LLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDKFDRERGY 415 Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R W+ E P + P SW ++ + YP PIV+ K L+ Y Sbjct: 416 ARAWIAEGQGNPPDTATSYFEAIPKSWGLRS--TDIYPKPIVEAAKGRQRALDAYQ 469 >gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 1] Length = 443 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 221/475 (46%), Gaps = 39/475 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYA 63 M+ L R D R+ DN L A N VI +FI TPEQ + S F+ Sbjct: 1 MNT-LFIFRRDFRVQDNVGLNYAMTNFK-NVIPIFIFTPEQIDKNKNKYFSDHSVQFLCE 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++++ I + D + + S +T + +N+ Y +RDK + Sbjct: 59 CLEELKEK-----IGLHIF----YGDYMNVIRSIHKDHHLTHIVFNQDYSPYSRKRDKTI 109 Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E+ Q I C +D +L P G+ Y VYTPF+ + QN + V I Sbjct: 110 EQWCQSEQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQNHSVPMPKKRGVKHI 169 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + DY + G ++ L L+K + T Sbjct: 170 KHIDFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKKSHATYERNKLNT-------ET 222 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LS Y+ G LS R+ ++ K+ ++L+WREF+ ++ ++P + Sbjct: 223 THLSSYIKYGCLSIREVYHSFKD-------------DDLKSQLVWREFFYYINYYFPELI 269 Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 K + + I+W ++ L AWK G TGFP++DA MRQLN G+MHNR R+I+A+FL Sbjct: 270 DKSKSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFL 329 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420 + L ++WR GE YF L+D D NN WQW +S G D+ PY R+FNP +Q KRFD Sbjct: 330 NRILGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDA 389 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 Q +I+ W+PEL +V + IH K +++YP P+VD+ +L Y Sbjct: 390 QCDYIKKWIPELKDVAPKDIHQ-WDISCK-QYNVDYPCPMVDYALCRERSLKMYK 442 >gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae CT 5369-93] Length = 504 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39] gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39] Length = 504 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSQAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC 13129] gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium diphtheriae] Length = 446 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 143/480 (29%), Positives = 206/480 (42%), Gaps = 50/480 (10%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +VW R+DLR+ DN AL A + A + AV+IA + +++ SLL Sbjct: 6 VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANE--VGVRPLGGAVKWWLHHSLLA 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q+G+ D + L T + NR+Y+ D Sbjct: 64 LSEQLAQRGVRLHVLS----GDPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----- 181 + L PG I YKV+TPF + L + L +L P Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP 179 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 I T + + +I + GE A L + Y + RD P I G Sbjct: 180 IDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAELDDILPRYL-DDRDRPDIDG 238 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS+LSP L G LS + WN + + +L+WR+F H + +P + Sbjct: 239 TSRLSPRLRFGELSVAEVWNHA------------HTSEGFRRQLMWRDFAWHRLDAHPDM 286 Query: 302 CMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + D AW+ G TG ++DA MR+L G MHNR+RM+ AS Sbjct: 287 ATANIRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAASL 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVK+L + WR GE++F L+D D ASN WQW A +G+D+ PYFRIFNP Q +RFDP Sbjct: 347 LVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRFDP 406 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAKK 479 GT+ WLP +S +YP IVD K++ L+ Y A K+ Sbjct: 407 DGTYRTRWLP--------------------IMSADYPEEAIVDLKESRLRALDAYNACKR 446 >gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80] gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457] gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33] gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae RC9] gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae B33] gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae BX 330286] gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae MJ-1236] gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10] gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholera CIRS 101] gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae INDRE 91/1] gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757] Length = 504 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis] gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis] Length = 541 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 186/498 (37%), Gaps = 33/498 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S + WLR LRI DN AL A N V+I + I F+ +L Sbjct: 21 SHSIHWLRKGLRIHDNPALRDAVLN-WGTFRVVYILDTKSVASSNIGLNLWRFLLQALED 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + + + +T+L + E RD + Sbjct: 80 LDDSLRKLNSRLFVIR----GQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S I++ + ++I+ + D + Sbjct: 136 REAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQEL 195 Query: 187 PVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQR- 234 TP + Y ++ ++ GE AL L + + K + + Sbjct: 196 GHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKP 255 Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + S +SPYL G LSPR + RL + + + P S +L+WREF+ Sbjct: 256 KVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKGGP--PPTSLYGQLLWREFF 313 Query: 292 RHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + P+ P + + + + LQ W TGFP IDA M QL GW+ Sbjct: 314 FVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWI 373 Query: 350 HNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H R+ ASFL + + W G + F LLD D +SN G W W + + S +F Sbjct: 374 HYLARVAIASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYS-AFSQQFFNP 432 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462 P K D G +IR +LP L P +YIH P K + +YP P+VD Sbjct: 433 PCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVD 492 Query: 463 HKKACHHTLNQYYAAKKQ 480 H+KA + + + K Sbjct: 493 HEKAVSKNMEEMTSVYKS 510 >gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata] Length = 546 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 117/509 (22%), Positives = 180/509 (35%), Gaps = 40/509 (7%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------IS 54 M+ L+W R LR+ DN AL A S+ VF+ P Sbjct: 1 MATRSGSLIWFRKGLRVHDNPALEFASKGSEFMF-PVFVIDPHYMESDPSAFSPGSSRAG 59 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYN 109 + F+ SL + SL + G + + L C + + Sbjct: 60 VNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDPYYKA 119 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 ++ + +E + D + G K+ A + + Sbjct: 120 LDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLKIAGEPSCAKSELV 179 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFC 223 + L PS + + D G ++ I K Sbjct: 180 MSYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEALKRLTKSISDKAW 239 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 T+ +SPYL G LS R + L+ + D+ S L Sbjct: 240 VANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLLG 298 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA M QL Sbjct: 299 QLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQL 357 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GWMH+ R A FL + DL + W G + F L+D D A NNG W W + + Sbjct: 358 LKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY 417 Query: 403 VP---YFRIFNPTIQG----KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449 F + Q ++DP G +IRH+LP L ++P QYI+ P + Sbjct: 418 QAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKAN 477 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP P+V H A + A Sbjct: 478 CIVGKDYPKPMVLHDSASKECKRKMGEAY 506 >gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis] Length = 755 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 124/514 (24%), Positives = 190/514 (36%), Gaps = 56/514 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 L+W R DLR+ DN AL AA A VI +FI +PE+ ++++ +L Sbjct: 106 LLWFRRDLRLCDNPALTAALE-VGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164 Query: 66 LQVQKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + G + + S++ L + + N YE RD Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK---VYTPFRKALIQNLVQADLRSLP 178 L + S L + + + F QN A L Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284 Query: 179 VPAIRLTGPVTPSNIP--------------RFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 P P P +I + E+ A L F Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDWAASIRKSWDFSEEGAHARLEAFLG 344 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + VY Y ++ TS +SPYL G LSPR K + + Sbjct: 345 DGVYRYDKESGRADAPNTSCVSPYLHFGQLSPRWVLWDAKAAR--------CRPPKFQRK 396 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+ + + P + + W+ D L+AW++G TG+P++DAAMRQL Sbjct: 397 LAWRDLA-YWQLSLFPELPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDAAMRQLW 455 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM-----------SQLLDGDLASNNGGWQ 393 GWM+N +R + ASFL+ L + W+ G +F L+D D+A + WQ Sbjct: 456 LTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAIDAMMWQ 515 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---- 449 G D + + +P DP G+++R W PEL+ +P + IH P Sbjct: 516 NGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCPASVLRR 573 Query: 450 --NDLSLNYPLPIV-DHKKACHHTLNQYYAAKKQ 480 L YP IV D ++ +L +KQ Sbjct: 574 AGVVLGQTYPERIVTDLEERRSRSLRDVALVRKQ 607 >gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group] gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group] Length = 551 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 127/498 (25%), Positives = 201/498 (40%), Gaps = 31/498 (6%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL A + A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + I S P I + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR- 234 P + TG +PR + + I F GE AL +R+ +K + ++ Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 T+ LSPYL G LS R ++ +++ + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W + + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQS 481 A A + Sbjct: 494 AIASKECKKMMGEAYASN 511 >gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM 43021] Length = 425 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 133/455 (29%), Positives = 200/455 (43%), Gaps = 33/455 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLR+ D+ A AA +V+ +F+ P ++ F+ SL Sbjct: 1 MDTVIVLFNRDLRVHDHPA-LAAACADAWRVVPLFVIDPGV-----PGGHRAGFLAESLD 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ SL ++G Q D + + ++ + RR++ L + Sbjct: 55 DLRGSLRERGGDLVVRQ----GDPVAETLRLARELPAQAVYVSADVSALAQRRERRLAEE 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + V + P L + + + + +R+ Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVRIPE 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + +P P GE A +R++ K V Y + D A TS+LS Sbjct: 171 GLEAGPLPVAGHEPHGLFR----GGETVARERMRQWLKYCVEDYADGHDDLAGNRTSKLS 226 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LSP + ++ +L WR+F+ + +P + Sbjct: 227 PYLRFGCLSPLEL------------ESLSENGDDFVRQLCWRDFFHQVTRAFPRINRDDY 274 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + EW D QAWK+G TG PI+DA MRQL GWMHNR RM+T+SFLV+ L Sbjct: 275 ---RPQGQEWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVRRLR 331 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR+G E+F LLDGD+++N G WQW A TGND+ P RI NP Q +RFDP+G +IR Sbjct: 332 VDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRP-NRIVNPVRQARRFDPEGEYIR 390 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +LPEL+ VP + I+ P YP P+V Sbjct: 391 RYLPELDAVPVKMIYEPWRMSTGI---RGYPAPLV 422 >gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152] Length = 436 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 192/453 (42%), Gaps = 25/453 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + DLR+ DN L AA ++ V+ +F+ ++ F+ A++ ++ Sbjct: 2 TAIALFTRDLRVHDNPVL-AAARDAGDAVVPLFVIDAHLV-PDRCPPNRARFLAAAVREL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L +G + D+ +D + + R L +RL Sbjct: 60 DAELRTRGGRLIVRRGVVADEVARVVD----ETGARTVHLADDVSGYSAARADALRERLD 115 Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R + + S+ G +L A + V P + + Sbjct: 116 RRGVRLEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDL 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + GE +L + V YVE D A TS LSP Sbjct: 176 PSAALPTPESLNRGEPSPQLSVGGETTGRALLDSWLAGPVDDYVETGDDLAADATSHLSP 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G LSP + +R+ +G ++ +L WR+F+ L+A P+V Sbjct: 236 YLHFGCLSPTELLHRV--------DVGSAGGQAFARQLAWRDFHHQLLAARPAVARHDY- 286 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 I W D L AW+ TG+PI+DAA+RQL+T GW+ NR R+I A+FL K L + Sbjct: 287 --RPRPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLTKTLGL 344 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 WR G +F+ L+D DLA+N WQW A TG+D+ P R FNP Q R+DP G ++R Sbjct: 345 HWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRP-NRGFNPLRQADRYDPDGVYVRR 403 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 W+PEL ++ IH P ++YP PI Sbjct: 404 WIPELADLDGGRIHRPWRA------EVDYPSPI 430 >gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae TM 11079-80] Length = 499 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFSRLAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAVL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3] Length = 504 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 179/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGH 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226] Length = 504 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFSRIAERHAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSQATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGL 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPFEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica] Length = 539 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 123/488 (25%), Positives = 204/488 (41%), Gaps = 31/488 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYAS 64 + L R DLR+ DN +L A + +++ VF+ PEQ + S F+ S Sbjct: 55 KIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMCES 113 Query: 65 LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + + L + N +E + + + YN Y + RD + Sbjct: 114 LNDLGRQLKEEVDGKLHLFMGGN----LETIKKIKEVVNFSAIAYNEDYSVYARERDGEI 169 Query: 124 EKRLQHRVICKSFDDSV----LLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSL 177 E+ + + ++ + IQ ++ + Sbjct: 170 EEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRVLSIFFKHIQKFYDIRKPESNF 229 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A + T + + ++ + Y E R+ Sbjct: 230 EFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKIKNKKDYNETRNFM 289 Query: 238 A-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 GT+++S +L G +S R+ + R E F + + +L++R+FY + + Sbjct: 290 HLKAGTTKMSAHLKFGTVSIREMYWRTAELFGETHD--------LIRQLVFRDFYLKIYS 341 Query: 297 FYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + G + +I W+ D L AW +G TGFP++DAA RQL IGW HNR+RM Sbjct: 342 HNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRM 401 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQ 414 +T L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYFR FNP IQ Sbjct: 402 LTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQ 461 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACHH 469 K+FD +G +I+ ++PEL +V +H + N YP P+V H +A + Sbjct: 462 SKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKN 521 Query: 470 TLNQYYAA 477 + Y A Sbjct: 522 AVYLYKKA 529 >gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2] Length = 504 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + P +++ A +++ + DL S + Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAATL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQIPLESPYLNPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae 12129(1)] Length = 485 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + LP +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein [Vibrio cholerae bv. albensis VL426] Length = 506 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 98/489 (20%), Positives = 181/489 (37%), Gaps = 27/489 (5%) Query: 6 AM-SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +M ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ S Sbjct: 2 SMEKINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + L+Q D + + ++ +++ + + Sbjct: 61 LQAINRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEAIYSHQEVGLACTFQRD--- 113 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + P +++ A +++ + DL + Sbjct: 114 -LALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDA 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGT 242 S+IP M G A L F + Y P+ Sbjct: 173 ATLGLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHAC 229 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 230 SRMSPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEME 287 Query: 303 MGKPFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S Sbjct: 288 FRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + VDWR G Y LD + + +Q A G RI+NPT Q + D Sbjct: 348 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDS 405 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +G FI W+PEL VP + P + + L Y P++D + + ++ Sbjct: 406 EGHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRL 465 Query: 475 YAAKKQSLL 483 + +K + Sbjct: 466 WQWQKLPAV 474 >gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi] Length = 608 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 107/517 (20%), Positives = 185/517 (35%), Gaps = 47/517 (9%) Query: 7 MSVH-LVWLRNDLRITDNKALYAA----CHNSDAKV--IAVFIATPEQWRQHGISARQSH 59 M+++ ++W R+ LR+ DN +L A C +S+ V VFI E + + Sbjct: 62 MTINNILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMK 121 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + + + G + DS L + + KL + + E R Sbjct: 122 FLLESLADLDRQFRELGGQLLVFR----GDSETVLRRLFEELNIKKLCFEQDCEPIWRER 177 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D+ + K + + + S L + + T +++ R + Sbjct: 178 DERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPPRPVGA 237 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ------ 233 P I +Q P +K + Sbjct: 238 PDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIGGETRALESLG 297 Query: 234 ----------RDIPAIQGT---------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 R+ + + +S L G LS R + + + F + Sbjct: 298 ARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQASS 357 Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 + +LIWRE++ + P + L WK+G T Sbjct: 358 QFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLNIPWYEPVDDSLVRWKEGRT 417 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNG 390 GFP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + G Sbjct: 418 GFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHFLKYLLDADWSVCAG 477 Query: 391 GWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 W W +S+ + + + P R DP G +++ ++PEL N P +H P + Sbjct: 478 NWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNYPAHLVHEPWKATKE 537 Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP P+VD + +++ Sbjct: 538 EQLEYGCTIGQQYPAPMVDLNVVAKRNAHAMSKLREE 574 >gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii] Length = 559 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 127/510 (24%), Positives = 223/510 (43%), Gaps = 38/510 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ + A +LVW R DLR+ D A N+ V+ +FI P + + + Sbjct: 1 MENSKA--CNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--R 118 + SL+ + SL+ G + + D++ L + T++F N Y R Sbjct: 58 LKQSLIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVAR 114 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ ++ L++ + +F+ L P I + + + F ++ + D+ Sbjct: 115 DRRVKQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSS 174 Query: 179 V-----------------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + + + G ++A L+ Sbjct: 175 QARIFPYREYLDVISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQA 234 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAF 279 F + Y R TS LSPYL G LS R+ +N + K+ + L P+ A Sbjct: 235 FLVAPLNDYTTSR-ETTDNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAH 293 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +L + RE+ R++ +P + W+ D +AWK G TG+P++DAA Sbjct: 294 LFLRAIGLREYSRYISFHFP----FTQEQSLLKNFPWSNDEIHFKAWKLGKTGYPLVDAA 349 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR+L + GW+H +LR++T+SFL+K L + W G +YF LLD DL S+ GW++ + Sbjct: 350 MRELWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCL 409 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLS 453 D R+ +P +G + D +G ++R WLPEL+ +P Q+IH P+S +L Sbjct: 410 TDGHELDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELG 469 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 NYP PIVD + A + + ++++ + Sbjct: 470 TNYPKPIVDMEVAKYRLSQAVKSMREKNAV 499 >gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST] gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae] gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST] Length = 545 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 114/516 (22%), Positives = 196/516 (37%), Gaps = 46/516 (8%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQS 58 M+++ ++W R+ LR+ DN +L A + K+ +FI E + + Sbjct: 1 MTINNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRM 60 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + + G + DS+ L + + KL Y + E Sbjct: 61 KFLLESLADLDRQFRDLGGQLLVFR----GDSVTVLRRLFEELNIKKLCYEQDCEPIWKE 116 Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175 RD + K + + C L P ++ + + + + Sbjct: 117 RDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVG 176 Query: 176 --------SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRK 221 VPA+ + +P D+ + GE AL L Sbjct: 177 APNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGA 236 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYL------SIGVLSPRQCWNRLKEEFVDLLI--- 272 K++ + E +P L P G LS R + + + F + Sbjct: 237 RLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQ 296 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 G +LIWRE++ + P + + + L WK+G TG Sbjct: 297 FKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYKPEDDSLTRWKEGRTG 356 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP+IDAAMRQL GW+H+ LR ITA+FL + L + W G ++F+ LLD D + G Sbjct: 357 FPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGN 416 Query: 392 WQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 W W +S+ + + + P +R DP+G +++ +LPEL N P Q++H P + Sbjct: 417 WMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASREQ 476 Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP P+VD + + +++ Sbjct: 477 QIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREK 512 >gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T] Length = 526 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 96/498 (19%), Positives = 168/498 (33%), Gaps = 29/498 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS LVW + DLR+ A V+ V I P W Q + + F+ S Sbjct: 1 MSYGLVWFKRDLRLA--DHAALATAARRGPVLCVLIVEPSLWAQPDAARQHYEFMLESAR 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L++ G +++ LD L + + R Sbjct: 59 ELHAGLARVGGRLHLL----VGEAVAVLDRLHAAAPFDTLHSHEETGNAASYARDRAVAR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + + ++ + LR + +PA G Sbjct: 115 WCRARGVRWHEPAQFGVVRRLDDRDRWQAAWEAQVAAPQVELPEPSRLRFVALPAALQPG 174 Query: 187 PVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 G AL +L F + Y Sbjct: 175 AGATWPDRGAIAAVRAPAAVALGLDAFEPPRRQRGGRHAALEVLHDFLDARSGQYRGGIS 234 Query: 236 IPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNELIWREFY 291 P T+ LSPYL+ G LS R+ + L + ++G ++L+ L W + Sbjct: 235 SPLKAPTACSRLSPYLAWGCLSLRELVQATRARVAALPEGDRRRAGLAAFLSRLYWHCHF 294 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P++ + E + A G TG+P++DA + L GW++ Sbjct: 295 IQKLESEPTLEFRNLHRGYDGLREPEWNQAHFDALVGGRTGWPLVDACVAMLRATGWLNF 354 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + S L + WR + LD + + Q +G + R++NP Sbjct: 355 RMRAMLVSVAAYPLWLHWREVGLWLARAFLDYEPGIHWS--QLQMQSGTTGINTTRVYNP 412 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465 Q + DPQG F+R WLP L VP ++ P + + + LP+VD + Sbjct: 413 IKQARDHDPQGVFVRRWLPALRRVPDTWLFEPWRMPESVQARCGVRVGEDIALPVVDLES 472 Query: 466 ACHHTLNQYYAAKKQSLL 483 A + +A + Q + Sbjct: 473 ATRAAKTRIHALRAQPEV 490 >gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii] Length = 469 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 181/469 (38%), Gaps = 29/469 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSHFI 61 ++W RNDLR+ DN ++ A +V+ V++ P W A ++ FI Sbjct: 11 VLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRAKFI 70 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +++ L G + L + L + +E Sbjct: 71 QECVADLRQRLQGLGSDLVV----AVGQPEQLLPALLEGGGAAPLVLTAEEVTSEEAAVD 126 Query: 122 LLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + R K + L+ K L A Sbjct: 127 VAVARAIKPAGGKLLRYWGHTMYHYDDLDLPDVFTPFKEKVEKRAALPLPPAPRLGATAA 186 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD-IP 237 A +P F GE AL L+ + + Y + R+ + Sbjct: 187 AALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKYYLWDSDLLSTYFDTRNGML 246 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 +++ +P+L+ G +SPR+ ++ +++ + + ELIWR+F+R Sbjct: 247 GGDYSTKFAPWLAQGCISPRKIFHEIRKYESQRFSNK--STYWVIFELIWRDFFRFFALK 304 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + + WN D L W++G TG P++DA MR+L G+M NR R Sbjct: 305 HGNRIFFETGTSGLPLV-WNPDPELWARWREGRTGLPLVDANMRELAATGFMSNRGRQNV 363 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS+LV DL VDWR G +YF LLD D+ SN G W A+ G FN Q K Sbjct: 364 ASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWGNW--VAAAGLTG-GRVNHFNIAKQSKD 420 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPI 460 +DP G +++ W PEL NVP +H P + + ++YP PI Sbjct: 421 YDPTGEYVKTWCPELKNVPVTKVHEPWLMSKEEQERSGCRIGVDYPNPI 469 >gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group] Length = 551 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 199/498 (39%), Gaps = 31/498 (6%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQW---------RQHGISARQSHFI 61 VW R LR+ DN AL A + A++ VF+ P + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + I S P I + + Y F + + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQR- 234 P + TG +PR + + I F GE AL +R+ +K + ++ Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKRMRESLHDKEWVAKFEKP 256 Query: 235 ----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 T+ LSPYL G LS R ++ +++ + S +L+WR+F Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTKKHTNPPV-SLTGQLLWRDF 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + P+ K ++I W ++ L AW+ G TG+P IDA M QL GWMH Sbjct: 316 FYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G + F L+D D A NNG W W + + Y RI+ Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIY 433 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 +PT GK++DP G +IRH++P L ++P +YI+ P + + +YP P+VDH Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493 Query: 464 KKACHHTLNQYYAAKKQS 481 A A + Sbjct: 494 AIASKECKKMMGEAYASN 511 >gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4] Length = 485 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 98/486 (20%), Positives = 180/486 (37%), Gaps = 26/486 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++LVWL+ DLR+TD+ L AA S + +++ P S R F++ SL Sbjct: 3 KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L+Q D + + ++ +++ + + Sbjct: 62 INRDLAQSKGEVLIVTS----DWQTCFARIAERYAIEVIYSHQEVGLACTFQRD----LA 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + LP +++ A +++ + DL + Sbjct: 114 LAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAAL 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245 S+IP M G A L F + Y P+ S++ Sbjct: 174 GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRM 230 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL+ G +S R+ + L + + + + + L W + + Sbjct: 231 SPYLAWGNISLREMYQTLLKHWSVAG--FRRSLIALSSRLHWHCHFIQKFESECEMEFRC 288 Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + L AW+ G+TG P++DA MR L G+++ R+R + S L Sbjct: 289 VNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH 348 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 + VDWR G Y LD + + +Q A G RI+NPT Q + D +G Sbjct: 349 HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQ 406 Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI W+PEL VP + P + + L Y P++D + + ++ + Sbjct: 407 FIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQW 466 Query: 478 KKQSLL 483 +K + Sbjct: 467 QKLPAV 472 >gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Ferrimonas balearica DSM 9799] Length = 484 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 106/486 (21%), Positives = 182/486 (37%), Gaps = 32/486 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VWL+ DLR+ D+ L AC SDA ++ +++ P+ + R F++ SL Sbjct: 5 PLQVVWLKRDLRLQDHAPLAFACR-SDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKD 63 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ G F D I+ L+ + +L + + ++ R Sbjct: 64 LNAGLAPHGGRV----TCWFCDPIDALNRLASDFTLVQLLSHEETGLSVTFERDQAVSRW 119 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 P G++ +RK + Q + D + + Sbjct: 120 CDDN----GVPWHQWPNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWARVRWCHLP---- 171 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 A + P GE A L F ++ Y P TS L Sbjct: 172 -----DQTIPADWRSAAEGFQPGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTSCSRL 226 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--M 303 SPYL+ G LS RQ RL++ + + + L WR+ + ++ Sbjct: 227 SPYLAWGNLSVRQVIQRLRQ--DADTPDWRPARRALTSRLKWRDHFIQKFESECAMEGRP 284 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + L AW+ G TG+P++DA+MR L+ G+++ R+R + SFL Sbjct: 285 INQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAMLVSFLCH 344 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L++DWR G + LD + + +Q A + RI+NP Q D G Sbjct: 345 HLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQA--AVTGIHTIRIYNPVKQSLEQDSDGQ 402 Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FI+ + PEL +P H P L + + +YP PI+D + + Sbjct: 403 FIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIIDLSETGPRARQLLWQW 462 Query: 478 KKQSLL 483 + + + Sbjct: 463 RARPDV 468 >gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae] Length = 522 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 111/499 (22%), Positives = 177/499 (35%), Gaps = 35/499 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQV 68 + W R LR DN +L A S V VF+ + + I A Q F+ L + Sbjct: 10 IHWFRKGLRFHDNPSLLHALRTSH-HVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQDL 68 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127 L G+ + ++ + + + +T+L ++ + E RD + + + Sbjct: 69 DTRLRAYGLRLFVAR----GNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAV 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V ++ L I+ + + + ++++ S A Sbjct: 125 DEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFASC 184 Query: 188 VTPSNIPRFFDYPFQAIDP-------------MFPIGEQNALHILRKFCKEKVYYYVEQR 234 P R Y ++ G + L+ + + Sbjct: 185 SVPLEALRDERYNMVTLEELGMRCEHPSKFVGGETEGLRRVEKHLQNQGWVTQFEKPKTA 244 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWR 288 + T+ LSPY S G LS R ++RL + + L S ++ Sbjct: 245 PTSLLPSTTGLSPYFSFGCLSVRHFYHRLDKIYAKLRSHQTSASSKSRVMIERTRCVLLL 304 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E + D TGFP IDA M QL GW Sbjct: 305 EMLSRTCRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKEGW 364 Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +H+ R A FL + DL + W G++ F LLD D + N G W W + + Y R Sbjct: 365 VHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGS-AFYHQYTR 423 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 IF P GKR DP GTFIR +LP L + P QYI+ P + ++YP P+V Sbjct: 424 IFCPVRFGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMV 483 Query: 462 DHKKACHHTLNQYYAAKKQ 480 DH+ L ++Q Sbjct: 484 DHEIVSQQNLELMREIREQ 502 >gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata] Length = 542 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 114/512 (22%), Positives = 195/512 (38%), Gaps = 40/512 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS++++W R+ LR+ DN AL A + D +++ +FI E + + F+ S Sbjct: 1 MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L + + ++ S Q+ + KL + + E RRD ++ Sbjct: 61 LEDINNQLRSVSLSL-GRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVK 119 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPV 179 I C L P ++N + + +Q Sbjct: 120 NLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQIIGLPPRPVPDPDWHN 179 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR----- 234 ++ F + P ++P + + + +++QR Sbjct: 180 VKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLKVEE 239 Query: 235 -------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------KPK 275 ++ +S +L G LS R+ + + + F D+ Sbjct: 240 SAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLGMLM 299 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 SG +LIWRE++ + P+ + + LQ W QG TGFP+ Sbjct: 300 SGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLNIPWAETNHIQLQRWTQGKTGFPL 359 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDAAMRQL GW+H+ LR A+FL + L +W G YF+ LLD D + G W W Sbjct: 360 IDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMW 419 Query: 395 AASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447 +S+ + + + P KR DP G +I+ ++PEL NVP +YIH P Sbjct: 420 VSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQED 479 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + ++YP ++D AC + Sbjct: 480 SDCVIGIHYPERLIDLNVACKRNTIAMRTLRN 511 >gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH; Short=zCRY-DASH Length = 520 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 116/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57 MS + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 1 MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ S+ ++ L + G Q D E + E V Sbjct: 60 LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQL-GSVSTVAFHEEVASEEKSV 118 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173 + + ++ +H + VYT FRKA+ Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229 + P+ GP+ + + G + K Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+WR Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++++ + Y + + + + WN D + AWK+G TG P +DA MR+L G+ Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 FN QG +D G ++R W+PEL + +H P + + L+ YP PI+ Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi] gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi] Length = 539 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 112/510 (21%), Positives = 191/510 (37%), Gaps = 40/510 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL +A + D +I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLDD 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K L + Q + Q R+ K+ E RD+ + Sbjct: 67 IDKQLKEV-SDGQGGLLICEGQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAINNLC 125 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------ 181 + I S L + T +++ R + P Sbjct: 126 RELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHIIGLPPRPVHDPQFDGVGF 185 Query: 182 -------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI----------LRKFCK 224 R G + + P F+ + + I + + Sbjct: 186 VQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGERLKVEQHAF 245 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKPKSGA 278 E+ YY Q + +S +L G LS R+ + + + F ++ + Sbjct: 246 ERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACIRGVQMTSG 305 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +LIWRE++ + P + + LQ W+ G TGFP+IDA Sbjct: 306 AHITGQLIWREYFYTMSVNNPQYDRMEGNEICLNIPWAKPNEDHLQRWRLGQTGFPLIDA 365 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 AMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G W W +S Sbjct: 366 AMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNWMWVSS 425 Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451 + + + ++ P KRFDP G +I+ ++PEL NV ++IH P + Sbjct: 426 SAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEFIHEPWRMTAEQQEIAEC 485 Query: 452 -LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 486 LIGVHYPERIIDLSLASKRNMAAMKALRNS 515 >gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 112/499 (22%), Positives = 175/499 (35%), Gaps = 36/499 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR+ DN AL AA + + I +F P Q + + F+ Sbjct: 7 PTVIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRFLLECQND 66 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +S + + + T L + + RD+ + K Sbjct: 67 LSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122 Query: 126 RLQHRVIC---------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + D+ V G Q+ K + V A R Sbjct: 123 LANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAPERI 182 Query: 177 LPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKE 225 +R P +IP + P + Sbjct: 183 PDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIA 242 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-- 283 Q T+ LSP+L G LS R+ W+ +++ K + N Sbjct: 243 TFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLP 302 Query: 284 -ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L++RE + A V + WK+G TGFP IDA MRQ Sbjct: 303 GQLLFREMFFAAQAALGPVYAQTRGNKIVRFQAEV----WFRRWKEGRTGFPWIDALMRQ 358 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + V W G E F L+D + ASN G W W + T Sbjct: 359 LKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFF 418 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPI 460 + Y R ++P GK++DP+G FIRH++PEL + +YI+ P ++ +YP P+ Sbjct: 419 TQ-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKSYPEPM 477 Query: 461 VDHKKACHHTLNQYYAAKK 479 D + + Q A + Sbjct: 478 FDFDERRQTCIAQMKEAYE 496 >gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio] gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio] Length = 520 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 115/479 (24%), Positives = 195/479 (40%), Gaps = 30/479 (6%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57 MS + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 1 MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ S+ ++ L + G Q D E + E V Sbjct: 60 LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQL-GSVSTVAFHEEVASEEKSV 118 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173 + + ++ +H + VYT FRKA+ Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229 + P+ GP+ + + G + K Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+WR Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++++ + Y + + + + W D + AWK+G TG P +DA MR+L G+ Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 FN QG +D G ++R W+PEL + +H P + + L+ YP PI+ Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 476 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 210/469 (44%), Gaps = 19/469 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V LVW R+DLR+ D+ AL AA V V+I P++ A + SL Sbjct: 1 MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + ++L+Q+G + L + + +NR+YE + RD ++++ Sbjct: 60 ALAEALAQRGSRLLMLHGPSLG----TLQALAALTGAEAVLWNRRYEPHIEARDTRIKRQ 115 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + +SF+ S+L P I Y+V+TPF K + L Sbjct: 116 LRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPFWKNALAQWRLRPLWEASARLPSPD 175 Query: 186 GPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P P GE A L+ F + Y + RD A+ Sbjct: 176 QAGAPDGRHLDAIVPETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDRMAV 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LS +L G + + V P +L EL WREF H+M YP Sbjct: 236 DGTSRLSAHLHFG-----EVSVQRVAAAVLAAEVPAPDRERFLAELGWREFAHHVMHHYP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 V + L AW++G TG PIIDA MRQL GWMHNR+RMI AS Sbjct: 291 HVVDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRMIVAS 350 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 ++ K L + WR G +F L+D DLA+N GWQWAA TG D+ PYFR+FNP Q +FD Sbjct: 351 WVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQAMKFD 410 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKA 466 PQG +I WLPEL +P AP D L+ YP P VD + Sbjct: 411 PQGEYIARWLPELAALPLPARFAPWEHPDLLRRLAPRYPRQPQVDLAQG 459 >gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 443 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 130/457 (28%), Positives = 208/457 (45%), Gaps = 32/457 (7%) Query: 23 NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 + AL AA N +V+A F+ P R+ ++ +L +++ L + +V Sbjct: 17 HPALVAAAQN--EQVLACFVLDPRLEASS--GERRLQYLGDALRRLRSDLDGRLLV---- 68 Query: 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142 E + + + + + + RRD + L + + ++ Sbjct: 69 ---TRGLPHERIPRIVKEIGASSVHVSTDFAPFGRRRDDRVRAALGSVPLVATGSPYLVS 125 Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202 P G + Y+V+TPF + + ++ +S A + P Sbjct: 126 P-GRVTKQDGTPYQVFTPFLRKWREVGWRSPAKSGAESAHWIDPDQVAIPQCDI---PDP 181 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 GE+ AL F + + Y RD P ++ TS++S +L G + PR Sbjct: 182 GATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRTMVAD 241 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWNKDS 320 L + GA ++L EL +R+FY ++ +P+ + + Sbjct: 242 L--------DLREPGAQAYLRELAFRDFYADVLHHWPASAWRNWNHQFDGIRTDTGAEAK 293 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 ++WK G TGFP++DA MRQL G++HNR+RMI ASFLVKDL + W+ G E+F+ QL Sbjct: 294 RRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWGAEWFLDQL 353 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +DGD+A+N GWQW A G D+ PYFR+FNPT Q +FDP G +IR W+PEL +V ++ Sbjct: 354 VDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPELRSVDDAHL 413 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 K + YP PIVDH L +Y + Sbjct: 414 -------RKGERPAGYPAPIVDHGAERAEALRRYQSI 443 >gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) [alpha proteobacterium HTCC2255] Length = 465 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 20/474 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R D R +D++AL AA H+S +I +FI + A + ++ +K Sbjct: 8 IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFIFDEVFEA---LGAAPKWRLGLAIECFKK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + G + ++ E L + ++++R Y+ + RD ++ L Sbjct: 64 KLERMGSNLILRR----GNACEILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLLNGT 119 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 +P + + L N + + L P + + Sbjct: 120 SFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVWPKSDLLS 179 Query: 191 SNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + + +GE+ AL+ L F KV Y RD P TS LS L Sbjct: 180 NWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHATSGLSENL 239 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G +SPR +N L+ + K GA +L EL+WREF HL+ +P + + Sbjct: 240 TYGEISPRLIFNSLR----NTFDKNDLGAEHFLKELVWREFAYHLLWHFP-KLDTQCWRG 294 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 W + +AW QG TG +DA MR+L T G MHNRLRMI S+L K L DW Sbjct: 295 EWNDFPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLTKHLQTDW 354 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 RIG ++F L+D D ASN GWQW A G D+ PYFRIFNP +Q ++FD G + + WL Sbjct: 355 RIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDGQYRKKWL 414 Query: 430 PELNNVPTQYIHA--PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + P +W L + ++ N I+D L+ Y KKQ Sbjct: 415 EADKELHAKAFFDAIPVAWKLSADKINQN---EIIDLSLGRKIALDAYAIFKKQ 465 >gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus 307] Length = 533 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 205/475 (43%), Gaps = 24/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R D RI DN AL AAC VI VFI E HG + + + + Sbjct: 69 IYWVRRDFRIGDNAALSAACATG-RPVIPVFICD-EVVESHGAAPKFR--LGEGVRVFGA 124 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + D++ L Q T +++NR Y+ RD ++ L+ Sbjct: 125 ALAVVGSRLVLRR----GDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALKAD 180 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLT 185 + + L P ++ Y+V+TP K + + A + Sbjct: 181 GVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVATPIPAPASVPAPDVWPTS 240 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L F + +V Y RD+P + GTS+L Sbjct: 241 DRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLPGVDGTSRL 300 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SP CW+ + + EL+WREF HL+ P + Sbjct: 301 SENLTYGEISPAVCWHAGWAAIHSGKGQA----EIFCKELVWREFAYHLVHHTPHIVDRN 356 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W +D+ + AWKQG TG +DAAMR++ G MHNR RMI AS+L K L Sbjct: 357 WKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIVASYLTKHL 416 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W++G+ +F L D D ASN GWQWAA +G D+ PYFR+FNP Q +FD G + Sbjct: 417 MTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDRAGLYA 476 Query: 426 RHWLPELN-NVPTQYI----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R W+ E + P + P +W + YP P+VD L Y Sbjct: 477 RTWIAEGQGDAPDTALSYFDAIPKNWGLAA--TDQYPAPVVDMATGRQRALEAYK 529 >gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum] Length = 553 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 40/507 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V + W RN LR+ DN AL A +N++ K+I +FI + F+ SL+ Sbjct: 1 MTVAVHWFRNGLRLHDNPALIEAHNNAE-KLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+ G Q + + + + + Y + RD+ ++ Sbjct: 60 DLNNNLALVGGRLYILQ----GNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 I C L P SI+ + + + + V + + Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------------------- 225 P++I F F I + ++ + Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235 Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +Y Q + + S LS L G LS R+ + L + F++ +S + Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 +LIWR+++ + + + I+ ++ +L+ WK G TG+P IDA Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDAG 355 Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 MRQL GW+H+ +R ASFL + DL + W G +FM LLD D + +G W W +S+ Sbjct: 356 MRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSSS 415 Query: 399 GNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451 + + P G R DP G +I+ ++PEL N+P Q+++ P + Sbjct: 416 TFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGCI 475 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP IVDH A + A + Sbjct: 476 IGKDYPNCIVDHTIASKGNRKKMLALR 502 >gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax] Length = 521 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 118/475 (24%), Positives = 195/475 (41%), Gaps = 33/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIYAS 64 + LRNDLR DN+ + A N++ ++ ++ P + + F+ S Sbjct: 8 ICLLRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLDS 66 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDK 121 + ++ +L KG Q E + Q E V + Sbjct: 67 IRDLRNTLLSKGSNLVVRQ----GKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGV 122 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + ++ +H ++ VYT FRKA+ + P Sbjct: 123 KDVCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQL 182 Query: 182 IRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 L + IP + GE L L+ + + Y E Sbjct: 183 KPLPSGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDAVATYKET 242 Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ +P+L++G +SPR ++++K+ + + + EL+WR++++ Sbjct: 243 RNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTANQ--STYWVIFELLWRDYFK 300 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y + + + I W KD L AWK+G TG P +DA MR+L G+M NR Sbjct: 301 FVGVKYGNRLFQVKGL-QDKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAMTGFMSNR 359 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R FN Sbjct: 360 GRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 418 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 QG +D G ++R W+PEL + +H P + L YP PIV Sbjct: 419 KQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNPIV 473 >gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940] Length = 478 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 118/486 (24%), Positives = 190/486 (39%), Gaps = 38/486 (7%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------- 56 M +VWLR DLR DN A + +V+ V+ P ++ Q Sbjct: 1 MPETAVVWLRRDLRTRDNA--TLAAACAADRVLPVYCFEPRRYGQRAFGGAASFEYDGVG 58 Query: 57 --QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ F ++ ++ L + G L L Y Sbjct: 59 AGRAQFEREAVGDLRDRLREIGSDLFVRH----GRPDAVLPDLVEAVDADHLHYQTLPIP 114 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 E R+ + + L V + L + +M +TP+R+++ + Sbjct: 115 EERTREHQVRRALPEAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREP 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P P IP D D P+ + ++ ++ V+ Sbjct: 175 IEAPAVPPVPADAPQPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETD 234 Query: 232 EQRDIPA-------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 R +S+ SP+ ++G LSPR + +KE + + + E Sbjct: 235 SLRAYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERVSND--STYWLNFE 292 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+F++ A Y I ++W +D + W++G TG P +DAAMR+L Sbjct: 293 LRWRDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELV 352 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G++ NR R ASFLV DL +DWR G ++ LLD D ASN G W + A GNDS Sbjct: 353 ATGYVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSRE 412 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458 F+ Q +R+DP G +I W PEL+ + +Y P ++ L +YP Sbjct: 413 GG--FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREPWRMDEEEQRERGLVLGEDYPE 470 Query: 459 PIVDHK 464 P+VD + Sbjct: 471 PMVDPE 476 >gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 295 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 162/258 (62%), Positives = 194/258 (75%), Gaps = 2/258 (0%) Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 FC++ Y QRD PA++GTS+LSP L+ GVLSPRQC +RL E L +W Sbjct: 30 FCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQCLHRLLTEHPAALDGG--AGATW 87 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 LNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D LQAW++G TGFPI+DAAMR Sbjct: 88 LNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMR 147 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QLN GWMHNRLRMI ASFL KDL +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D Sbjct: 148 QLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTD 207 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFRIFNPT QG++FD QG F+R WLPEL VP + +H P +W DK + L+YP PIV Sbjct: 208 AAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIV 267 Query: 462 DHKKACHHTLNQYYAAKK 479 DHK+A TL + AA+K Sbjct: 268 DHKQARQETLAAWEAARK 285 >gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484] Length = 450 Score = 240 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 141/463 (30%), Positives = 206/463 (44%), Gaps = 33/463 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M + W R DLR+ DN AL AA + D V+ +F+ P W + + ++ Sbjct: 1 MPT-VHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTA--AAGPRVAYLAR 57 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + +L + + + + + + E RRD + Sbjct: 58 SLRALDAALDGR---LVVRH----GRPQDVVPAVAREVEAPTVHVTAATEPYGRRRDDAV 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAI 182 + L + + + P G + Y+V+TPFR+A + + A R VP Sbjct: 111 AQALGDVPLVATGSPYAVAP-GRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWA 169 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + G P D P E A F + + Y E RD P + GT Sbjct: 170 DVRGDGVPDEPATTVDLPAAG--------EAAARRRWATFVADALADYDEDRDRPDLDGT 221 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +S L G L PR L + ++ +EL WREF+ ++ +P Sbjct: 222 SSMSVPLKYGELHPRTLLADL------AGAGSSASVATYRSELAWREFHADVLWHHPDAA 275 Query: 303 MG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +P AW +G TG+P++DA MRQL IGWMHNR+RM+TASF Sbjct: 276 RRSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTASF 335 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LVKDL W+ G E+F++ L+DGD+ N WQW A TG D+ PYFR+FNP +QG+RFDP Sbjct: 336 LVKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRFDP 395 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 GT++R W+PEL +P +H P IVDH Sbjct: 396 DGTYVRQWVPELRGIPGGAVHEPWKLPAAAAPDYP--PRIVDH 436 >gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis] gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis] Length = 523 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 121/475 (25%), Positives = 197/475 (41%), Gaps = 33/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIYAS 64 + LRNDLR+ DN+ L+ A N+D +++ ++ P + + F+ S Sbjct: 9 ICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLES 67 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDK 121 + ++ +L +KG + E ++ Q L E +V Sbjct: 68 VRDLRITLKKKGSNLLLRR----GKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAV 123 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + ++ H + VYT FRKA+ +P Sbjct: 124 KQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKL 183 Query: 182 IRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQ 233 L + ++P D+ Q GE AL L + E Y + Sbjct: 184 KPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWETNLVASYKDT 243 Query: 234 RDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ +++ +P+L++G +SPR + ++ + + + + EL+WR+++R Sbjct: 244 RNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTANQ--STYWVIFELLWRDYFR 301 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y + + W +D L AWK+G TG P +DA MR+L G+M NR Sbjct: 302 FVALKYGRRIFFLRGLQDKDI-PWKRDPKLFDAWKEGRTGVPFVDANMRELAMTGFMSNR 360 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R FN Sbjct: 361 GRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 419 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461 QG +D G +IR W+PEL + H P + + + L YP PIV Sbjct: 420 KQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYPYPIV 474 >gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102] Length = 516 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 125/482 (25%), Positives = 206/482 (42%), Gaps = 20/482 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +HL+W R DLR+TDN+ + + +DA+V+ FI P + + + F++ SL ++ Sbjct: 1 MHLLWFRRDLRLTDNE-IVTSSSGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +L + + ++ E + KLF+NR ++ Sbjct: 60 NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQVEYGINRDKTIVDFY 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 K + + + L A Q + + Q+ + + Sbjct: 120 -----KQLNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITLNLPQL 174 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQL 245 T + + + + FP GE A L F K++ Y Y + P + TS L Sbjct: 175 TFEELKQKYHRFWAVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLSQLGATSHL 234 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELIWREFYRHLMAFYPSVCM 303 SP+L+ G +S R + K L +PK ++ + L W + + + F+P + Sbjct: 235 SPHLTFGTISTRTVYQSTKALAEQLKTQPKAEFSLKAFRDRLRWHDSFTQRLYFHPEIAY 294 Query: 304 GKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + L QAW+QG TGFP++DA+MRQL T+GWM+ R+R + A+ Sbjct: 295 TNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMNFRMRAMCAT 354 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 FL + V W G +++M+ L+DGDLA +N WQ A N FRI+NP+ D Sbjct: 355 FLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYNPSKNIAEKD 414 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P G FI HW+PEL I +K + NYP I+D K +K Sbjct: 415 PLGEFIYHWIPELRGYSLLEI-----EQEKYIETSNYPKVILDWSKTRKVNGKIVSDLRK 469 Query: 480 QS 481 Q+ Sbjct: 470 QT 471 >gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii] gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii] Length = 557 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 143/491 (29%), Positives = 225/491 (45%), Gaps = 30/491 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + W RNDLRI DN Y A S A+++ +F W H S + +Y S Sbjct: 71 KTVIHWFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQS 130 Query: 65 LLQVQKSLSQKGIVFQYH-------QCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEIN 115 L + LS+ GI + SN + WL + L N +Y + Sbjct: 131 LKSLHGKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLAD 190 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E+ RD + + F D+ ++ PG + + Y V++P+ K ++ Sbjct: 191 ELYRDIRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKSS 250 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-- 233 + + + L + + + F + + Sbjct: 251 TNLIEPLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNVG 310 Query: 234 ----RDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 +D + +S LSPYL++G+LS R + + + V K + ++ E+ Sbjct: 311 NYLDKDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIREV 370 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR+FY+ ++ F+P + M PF + +I+W+ + Q W G TGFPI+DA MR+L+ Sbjct: 371 AWRDFYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKLSQ 430 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+++NR RMITASFL K+LL+DWR GE++F L+D DLASN GGW + +STG D+ PY Sbjct: 431 DGYINNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQPY 490 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 FR+FN Q + FDP G FI+ W+PEL N ++ +H +YP PI D K Sbjct: 491 FRVFNMERQSRAFDPNGEFIKKWVPELKN--SKNVH------SSIQEVESYPNPITDSKS 542 Query: 466 ACHHTLNQYYA 476 + L Y Sbjct: 543 SRQRALEIYNE 553 >gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1] Length = 468 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 143/480 (29%), Positives = 219/480 (45%), Gaps = 27/480 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ + W+R D R++DN AL AAC V+ +FI A + + Sbjct: 1 MTT-IYWVRRDFRLSDNPALVAACER--GAVVPLFICDEVIEGH---GAAPKWRLGLGVE 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++L G + D++ L + + +NR Y+ + +RD+ ++ Sbjct: 55 AFAEALHAVGSKLILRR----GDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAA 110 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---I 182 L+ + S VL P ++ YKVYTPF K + L + +PA Sbjct: 111 LKEDGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPDTW 170 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + ++ ++ + + + + P +GEQ A L F + Y + RD A GT Sbjct: 171 PASDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGT 230 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS L+ G +S RQCW+ + D GA ++L E++WR+F HL+ P + Sbjct: 231 SLLSENLAYGEISARQCWHAGQRAMADGK----PGAETFLKEVVWRDFAYHLVHHTPRIT 286 Query: 303 MGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W AWKQG TG ++DAAMR++ G MHNR RM+ AS+L Sbjct: 287 TANWREEWEAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYL 346 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K L+ DW+IG ++F L+D D ASN GWQW+A +G D+ PYFR+FNP Q ++FD Sbjct: 347 TKHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKA 406 Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475 G + WL E+ P A P +W + YP PIV + L+ Y Sbjct: 407 GRYRMRWLAEITGKPQDTASAYFDAVPRAWGLDPTMG--YPSAPIVTASEGRKRALDAYE 464 >gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis] Length = 862 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 129/506 (25%), Positives = 198/506 (39%), Gaps = 44/506 (8%) Query: 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHGISARQSHFI 61 AM LVW R DLR+ DN AL +A VI VF+ Q +++ Sbjct: 228 AMKPVLVWFRRDLRLHDNPALISALE-HGVPVIPVFLWCINEETGQNFTLATGGATKYWL 286 Query: 62 YASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +LL++ +SL + G + + E L S + + N YE RD Sbjct: 287 HHALLKLNQSLIQRFGSHIIFRVARS---CEEELVSLVHETGADTIIINAVYEPWLKERD 343 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHAL----------QMYKVYTPFRKALIQNLV 170 L+ + L+ + S L ++ A I + Sbjct: 344 DLISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPL 403 Query: 171 QADLRSLPVPAIRLTGPVT-------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A + + P I + E A L F Sbjct: 404 DAPRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAVTIRESWDFSEDGAYTCLANFL 463 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 ++ V +Y ++ TS +SPYL G +SPR + K +L Sbjct: 464 QDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTVLHEA--------YFTKKNVPKFLR 515 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L WR+ L+ +P + +P P + W+ D + L+AW++G TG+P++DAAMR+L Sbjct: 516 KLAWRDLAYWLLILFPDMP-SEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMREL 574 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWM N R + ASFLV L + W G +F LLD D+A N WQ +G D Sbjct: 575 WLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGGMSGLDHW 634 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 + + +P DP G+++R W PEL +P +YIH P L NYP Sbjct: 635 NF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYP 692 Query: 458 LPIV-DHKKACHHTLNQYYAAKKQSL 482 IV D ++ +L +K+ L Sbjct: 693 HRIVLDLEERREQSLKDVVEVRKKHL 718 >gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding [Acinetobacter baumannii ATCC 17978] Length = 381 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 143/270 (52%), Positives = 183/270 (67%), Gaps = 2/270 (0%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 +P+GEQ AL L +F +E V +Y +RD P IQ TS+LSPYL+IG+LS RQC L Sbjct: 114 WPVGEQYALEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQ 173 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 G +WL+EL+WREFY+H++ +P V PF T+KI+WN + L AW+ Sbjct: 174 HGNFHLVNEGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQ 233 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G TG PI+DA MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+ Sbjct: 234 MGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAA 293 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 NNGGWQW ASTG D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S Sbjct: 294 NNGGWQWCASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS-- 351 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 K DL LNYP PIVD K+ + + Sbjct: 352 SKTDLGLNYPKPIVDLKETRLKAIETFKNI 381 >gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio] Length = 520 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 116/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQ 57 MS + LRNDLR+ DN+ + A N++ +I ++ P ++ + Sbjct: 1 MSASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFR 59 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ S+ ++ L + G Q D E + E V Sbjct: 60 LRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQL-GSVSTVAFHEEVASEEKSV 118 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173 + + ++ +H + VYT FRKA+ Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST 178 Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229 + P+ GP+ + + G + K Sbjct: 179 PEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVAT 238 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + + +++ SP+L++G +SPR + ++K+ V+ + + EL+WR Sbjct: 239 YKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQ--STYWVIFELLWR 296 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 ++++ + Y + + + + WN D + AWK+G TG P +DA MR+L G+ Sbjct: 297 DYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGF 355 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRE-NRK 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 FN QG +D G ++R W+PEL + +H P + + L+ YP PI+ Sbjct: 415 FNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473 >gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790] Length = 431 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 211/469 (44%), Gaps = 45/469 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67 ++L R DLR+ DN AL + +N A +FI P Q + + S + +F+ +SL Sbjct: 1 MNLFIFRRDLRLYDNTALLKSLNNETAT---IFIMDPAQVKNNEYRSEKALNFMISSLYD 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + D ++ L ++ + +++ NR Y ++RD+ +++ Sbjct: 58 LMTDIEGNHGKLAVFH----GDPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEFS 113 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + D L + + +K +T F ++ V+ + + + Sbjct: 114 IKNNIKFNALDDYFLSDPELRTGSGSFFKNFTAFYNRAMEINVKKPVYEIKKSNLIPIDG 173 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + RD P + TS LS Sbjct: 174 DDMELK-----------------YNNYGRKTAIEKMHNFIKNDYSLRDFPELNMTSFLSA 216 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G +S R+ ++ +K+ + +L WR+FY ++ +P V Sbjct: 217 DIKFGNISIREAYHYIKD-------------PEFRRQLYWRDFYLYIAYHFPYVFGSNFN 263 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + K E + AWK G TG+PI+DAAMR LN G+++NRLRMI +SFLVKDL V Sbjct: 264 RKYNIKWEN--KEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLVKDLHV 321 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWRIGE+YF +L+D D ASNNG WQW ASTG +S +RI NP IQ K+FDP+ FI+ Sbjct: 322 DWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPECKFIKR 381 Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 ++ EL+++ + IH + NYP P+VDHK A Sbjct: 382 YVNELSDLEPEIIHNLYKIRLN-----NYPAPLVDHKTAVMEFRKLINQ 425 >gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 387 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 204/390 (52%), Positives = 272/390 (69%), Gaps = 4/390 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR+FC + Y +RD PA+ GTS+L Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLNELIWREFYRHLMIWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PFI WT+++ W ++SH QAW++G TG+PI+DAAMRQLN GWMHNRLRMITASFLVKDL Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 L+DWR+GE YFMSQL+DGDLA+NNGGWQWA Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWA 387 >gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora] Length = 520 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 196/498 (39%), Gaps = 42/498 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W R DLR+ DN +L NS V+ P + +Q +S + F+ SL + Sbjct: 19 TSLHWFRKDLRLHDNPSLRECLRNSKV-FYGVYFLPPSEAKQGSVSLNRWGFLLESLRDL 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G + + +E L + + + ++ + E RD ++ + Sbjct: 78 DTSLVECGSRLFVIR----GNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAK 133 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLT 185 I S L + ++++Q PVP + Sbjct: 134 ENGIEVISRVSHTLY--DPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKVGRKLFG 191 Query: 186 GPVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYV 231 VTP Y +D + + GE AL + + V Sbjct: 192 ACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQWMVKNDF 251 Query: 232 EQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + +I + LSPYL G LSPR R+ EE++ +L+WR Sbjct: 252 TEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIKSKGVSPPSE--LFVKLLWR 309 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF+ + P P + +I W L+ WK+G TGFP IDA MRQL T GW Sbjct: 310 EFFFVVGGQIPD-AHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWIDAIMRQLRTEGW 368 Query: 349 MHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN--DSVPY 405 +HN R ASFL + V+W G + F LD + + N G W W +++ VP+ Sbjct: 369 IHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWVSTSTFVKGPVPW 428 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 F P GK+ DP G ++R ++PE+ N+PT+YI P + +YP P Sbjct: 429 ---FCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCVIGRDYPAP 485 Query: 460 IVDHKKACHHTLNQYYAA 477 IV+H K + + Sbjct: 486 IVNHVKQRAICVQRMQEL 503 >gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays] gi|219888435|gb|ACL54592.1| unknown [Zea mays] Length = 550 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 201/464 (43%), Gaps = 43/464 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61 V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ F+ Sbjct: 52 VAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRAQFL 110 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +++SL +KG+ E L S ++ +++ E+ ++ Sbjct: 111 IECLGDLKQSLRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 166 Query: 122 LLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 L+ K L+ I + + + + + VYT FRKA+ Sbjct: 167 LVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVE 226 Query: 167 QNLVQADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------- 215 + LP P + G Sbjct: 227 SKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGMHFIGGESAALG 286 Query: 216 LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + K+++ Y R+ + +++ SP+L+ G LSPR +K + Sbjct: 287 RVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVAND 346 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + L ELIWR+++R L A Y + P +W++D L ++W+ G TG+P Sbjct: 347 --STYWVLFELIWRDYFRFLSAKYGNAIFH-LGGPRKVVSKWSQDQALFESWRDGRTGYP 403 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +IDA MR+L+ G+M NR R I SFLV+D+ VDWR+G E+F + LLD D ASN G W + Sbjct: 404 LIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPASNYGNWTY 463 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 A GND R F+ Q K +DP+G ++ +WLPEL ++ + Sbjct: 464 GAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKE 506 >gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2] gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena XCL-2] Length = 479 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 148/488 (30%), Positives = 220/488 (45%), Gaps = 31/488 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M LVWL+ +LRI + AL AA SD ++A + PEQ I A + ++ SL Sbjct: 1 MKT-LVWLQRELRINHHPALEAAMAASDDIIVA-YFHDPEQ----TIGAANTVWLANSLQ 54 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q+Q+ + + + L+ ++ ++FY Q + Sbjct: 55 QLQQDFKTRHGRLWCLE----GIFEQQLEQVIQTHQIEQVFYTFQLGHPFKAMQQQALNV 110 Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 Q + ++F+ L +LN + Q YKV+TPF L + L + + S P+ + T Sbjct: 111 CQRCQVPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPIDTLEKT 170 Query: 186 GPVTPSNIPRFF----------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + I + +GE A F E + Y + RD Sbjct: 171 ARTVCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLANYEQDRD 230 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 PAI GTSQLSP+L G L R L + WL +L WREF R ++ Sbjct: 231 FPAIDGTSQLSPHLHFGELHSRAIVFELLSLETE-PTIANQAIRVWLRQLAWREFARAIL 289 Query: 296 AFYPSVCMGKPFIPWTEKIEW-----NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +P + ++ S QAW +G TG PIIDA M+QL GWMH Sbjct: 290 WHFPHTETHPFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGMKQLWETGWMH 349 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+RM+ AS+L K+ +DWR G ++F L+D D A+N GWQW A G D+ PY+R+FN Sbjct: 350 NRVRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGVDAAPYYRLFN 409 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470 P Q ++FD G ++R WLPEL ++IHAP PI+D ++ H Sbjct: 410 PVRQSEKFDANGQYLRQWLPELKTYSNKHIHAPWLIAPNEKHFC----PIIDLTESRQHH 465 Query: 471 LNQYYAAK 478 L++ K Sbjct: 466 LDKVATLK 473 >gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis] gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis] Length = 513 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 107/499 (21%), Positives = 185/499 (37%), Gaps = 41/499 (8%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 ++M W R DLR+ DN AL + N A V+ P ++ +S + F+ S Sbjct: 17 SSM----HWFRKDLRLHDNPALLESFKNCQA-FYGVYFLDPASVQRSNLSPNRWWFLLES 71 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + +L G + ++ + Q + +L E +RD ++ Sbjct: 72 LRDLDYNLRSLGSRLLVVR----GQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVT 127 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 ++ + S L + T A + + Sbjct: 128 HLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTV 187 Query: 185 TGPVTPSNIPRFFDYPFQAI--------------DPMFPIGEQNALHILRKFCKEKVYYY 230 G P D + + GE AL L K+ Sbjct: 188 FGACLTPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKCAEND 247 Query: 231 VEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 E+R + LSPY+ G LSPR + +L ++ + L+ Sbjct: 248 FEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMKEKKSIPPA--TLFTGLVR 305 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE + H+ + + P + + W ++ L+ WK+G TGFP IDA MRQL G Sbjct: 306 RELFLHVASHNADLDKMLD-NPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLREEG 364 Query: 348 WMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVP 404 W+H+ R FL + V W G + F LD + + N W W + + + +VP Sbjct: 365 WIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSCSSYVHGAVP 424 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458 + + P GK+ DP G +I+ ++PE+ +P++Y+ P + + + +YP Sbjct: 425 W---YCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPS 481 Query: 459 PIVDHKKACHHTLNQYYAA 477 PIVDH + + + Sbjct: 482 PIVDHMEQRMICVQRMQQL 500 >gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str. Illinois] Length = 469 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 220/484 (45%), Gaps = 40/484 (8%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS+ +VW R D R DN AL+ A +I V+I +I Sbjct: 1 MSISQIAVVWFRKDFRTDDNPALFEATKI--RSIIPVYIIDENNCSIRKPGKAARIWIAE 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ + KSL +H ++I L + + + L++N Y+ + + D+ + Sbjct: 59 SLIDLNKSLD-------HHLKIYSGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQI 111 Query: 124 EKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + I ++F+ +L P + Y+++T F+ +++ ++ P Sbjct: 112 RTEILKDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPP 171 Query: 181 AIRLTGPVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 IR + I Q I + I EQ+A +L++F +K+ Y Sbjct: 172 KIRYCKEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYH 231 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 RD P GTS LSPY++ G +SP + W L + +L EL+WRE + Sbjct: 232 IDRDYPGKNGTSTLSPYINFGQISPNRIWFALVRFLPQSI--------QFLTELLWRE-F 282 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + + + W D + W +G TG+PI+DA +R+L + G+MHN Sbjct: 283 AYNILNTNPELGSQNLQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHN 342 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+RMI SFL K+LL+ W+ GEE+F L+D D ASN WQW A +G DSVPYFRIF+P Sbjct: 343 RVRMIVGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSP 402 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471 T Q K+FDPQ + WLPE + P +K + P+V+ K + L Sbjct: 403 TTQTKKFDPQLQYSDKWLPEYRS----TCFTPVHLQEKCRTPV---EPVVEEKVSRKKAL 455 Query: 472 NQYY 475 + Sbjct: 456 TAFR 459 >gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain Friedlin] Length = 541 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 125/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQH---GISARQSHFIY 62 V L R DLR+ DN L A C + V+ F P Q + F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ +D + + + +V + R Sbjct: 87 ESLVDLDGA-AQLNGGLVCLRGSD-EDCLRRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180 Q V D L P ++ + Q Y V+TPF A + V Sbjct: 145 DYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAVPLMVNVS 204 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF---CKEKVYYYVEQRDIP 237 ++ P + P + + C E++ Y + RD Sbjct: 205 KVQAMLVSQPKKCLEHHLVDPALVYTHMPQVQDHGGRTEGMKRLACVERLKQYADVRDDI 264 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288 A TS LSP++ G +S R+ W+ + + + ++ Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVQALGTGHAFTRQLVWREFYAMLAFTRPRLLQGQ 324 Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + PF P + +W+ + +A+K+G TG P++DAA+R L Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPLYDNYKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW HNR R++ ++F VK L +DWR E +F + +D D+ASNNGGW W++ G D+ PY Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVASNNGGWLWSSGQGADAQPY 444 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450 FR FN Q +RFDP FI W+PEL VP +H + K Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEEYCAKARGRATATHSRKRSGQ 504 Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + +YP PIVD K A + ++ K Sbjct: 505 VKAKEYPTSYPAPIVDIKAATKAIIEEFKKYGK 537 >gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] Length = 560 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 126/507 (24%), Positives = 200/507 (39%), Gaps = 40/507 (7%) Query: 12 VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61 VW R LR+ DN AL A + A++ VF+ P R + + F+ Sbjct: 17 VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + L + G + + D + + + KL + E + RDK Sbjct: 77 LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136 Query: 122 LLEKRLQHRVICKSFDDSV-----------LLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + I S L + + Y F + Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEPPE 196 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226 +P + TG +PR + + I F GE AL +R+ +K Sbjct: 197 PIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDK 256 Query: 227 VYYYVEQR-----DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + ++ T+ LSPYL G LS R ++ +++ + S Sbjct: 257 EWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV-SL 315 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WR+F+ + P+ K ++I W ++ L AW+ G TG+P IDA M Sbjct: 316 TGQLLWRDFFYTVAFGTPNFDQMK-GNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMI 374 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GWMH+ R A FL + DL + W G + F L+D D A NNG W W + + Sbjct: 375 QLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSF 434 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 Y RI++PT GK++DP G +IRH++P L ++P +YI+ P + + Sbjct: 435 FYQ-YHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGK 493 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481 +YP P+VDH A A + Sbjct: 494 DYPKPVVDHAIASKECKKMMGEAYASN 520 >gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus (Silurana) tropicalis] Length = 523 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 110/475 (23%), Positives = 182/475 (38%), Gaps = 33/475 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE------QWRQHGISARQSHFIYAS 64 + LRNDLR+ DN+ L+ A N+D +++ ++ P + + F+ S Sbjct: 9 ICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYGGTHYFNFPKTGPHRLKFLLES 67 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G + E + Q + Sbjct: 68 VQDLRNTLKERGSNLLLRR----GKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYNPI 123 Query: 125 KRLQHRVICKSFDDSV---------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + S L ++ + + D Sbjct: 124 LWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVRSTFQMPDRL 183 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQ 233 + T + + GE AL L + E Y + Sbjct: 184 KPLPSGLEEGSVPTHQDFDQQDPLTDPRSAFPCCGGETQALQRLHHYFWETNLVASYKDT 243 Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ I +++ +P+L++G +SPR + ++++ + + + EL+WR+++R Sbjct: 244 RNGLIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERTANQ--STYWVIFELLWRDYFR 301 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + Y + + W KD L AWK+G TG P +DA MR+L G+M NR Sbjct: 302 FVALKYGRRIFFLRGLQDKDV-PWKKDPKLFDAWKEGRTGVPFVDANMRELAMTGFMSNR 360 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASFL KDL +DWR+G E+F L+D D+ SN G W ++A GND R FN Sbjct: 361 GRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMI 419 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461 QG +D G +IR W+PEL + H P + L YP PIV Sbjct: 420 KQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGETYPYPIV 474 >gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania infantum] gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5] Length = 541 Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 124/513 (24%), Positives = 199/513 (38%), Gaps = 44/513 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62 V L R DLR+ DN L A C + V+ F P Q F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ +D ++ + + +V + R Sbjct: 87 ESLIDLDGA-AQLNGGLVCLRGSD-EDCLQRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSL 177 Q V D L P ++ ++ Q Y V+TPF + + Sbjct: 145 AYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHARRVAVPLPVNVS 204 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 V ++ ++ P A P + R C E++ Y + RD Sbjct: 205 KVQSMLVSRPKKCMGHHLVDPALVYAHMPQVQDHGGRTEGLKRLACVERLKQYADARDDI 264 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288 A TS LSP++ G +S R+ W+ + + + ++ Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324 Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + PF P + +W+ + +A+K+G TG P++DAA+R L Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW HNR R++ ++F VK L +DWR E +F + +D D A+NNGGW W++ G D+ PY Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANNNGGWLWSSGQGADAQPY 444 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450 FR FN Q +RFDP FI W+PEL VP +H + + Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCARARGKATATHSRKRSGQ 504 Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + +YP PIVD K A + ++ K Sbjct: 505 GNAEEYPTSYPAPIVDIKAATKAVVEEFKKYSK 537 >gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM 44702] Length = 492 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 150/509 (29%), Positives = 226/509 (44%), Gaps = 56/509 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSH 59 M +AM+ LVW R+DLR+ DN AL A +VIAV I A S Sbjct: 1 MTDRSAMT--LVWFRDDLRLADNAALEWAAQ--GGEVIAVVIDEDAAATGVRPRGAAASW 56 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + SL Q+ L + G+ + D ++ + + V + +NR+YE Sbjct: 57 WRERSLSQLAGRLLEHGVPMLHL----AGDPVDIMTALPGLLAVDAVVWNRRYEEPLRFV 112 Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQ 171 D +++ LQ SF +L P + + Y+V+TP+ +A + LV+ Sbjct: 113 DSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRAATPVAEDAVAQLVE 172 Query: 172 ADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-------LRK 221 A + P L P P ++ + GE+ R+ Sbjct: 173 AAAQVPADLRGPEKDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLAAFVTGDRR 232 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 Y + RDIP T+ LSP+L G +SP + W + VD P + + Sbjct: 233 TTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDVPAADGSAL 291 Query: 282 LNELIWREFYRHLMAFYPS---VCMGKPFIPWTEKIEWNKDSHLLQ------------AW 326 +EL+WR+F + P C+ + F + + + + + AW Sbjct: 292 HSELLWRDFAWQRLYHRPDLASRCVREQFTQFPWRWDNSLPGDVKHLGDATALAQDLSAW 351 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG P++DA MR+L T GWMHNR+RM+ SFL K+LL DWR GE++F L+D D A Sbjct: 352 RSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWDTLVDADPA 411 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN WQW A G+D+ PYFRIFNP Q K+FDP+ ++ W+PE V + HA Sbjct: 412 SNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPEAAHAGP-- 467 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 YP P+VD +++ L Y Sbjct: 468 ---------YPPPMVDLRESRQRALAAYE 487 >gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis] gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis] Length = 539 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 111/514 (21%), Positives = 186/514 (36%), Gaps = 48/514 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN A+ AA N D V I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + + L + +G + + + K+ + E RD+ + Sbjct: 67 IDRQLQEATEGRGGLLICE-----GQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAV 121 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + I S L + T ++ R + P Sbjct: 122 KSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNFE 181 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE------------------ 225 V S R F+ + Sbjct: 182 GVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKVE 241 Query: 226 -----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274 + YY Q + +S +L G LS R+ + + + F ++ Sbjct: 242 QHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGVQ 301 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 SG +LIWRE++ + P + D+ LQ W+ G TGFP Sbjct: 302 MSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWAKPDAEQLQRWRLGQTGFP 361 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +ID+AMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G W Sbjct: 362 LIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNWM 421 Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 W +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P + Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEPWLMSAEEQK 481 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 482 RYECLIGVHYPDRIIDLSLASKRNMLAMKALRNS 515 >gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198] Length = 256 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 164/253 (64%), Positives = 191/253 (75%) Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL + + L SGAF W NELI Sbjct: 1 MPHYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELI 60 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WREFY+HL+ P++C F WTEKI W + AW QG TGFPIIDAAMRQLN Sbjct: 61 WREFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQT 120 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWMHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYF Sbjct: 121 GWMHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYF 180 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RIFNPT QG++FDP G FIRHWLPEL +VP++YIH PH W K + L+YPLPIVDH KA Sbjct: 181 RIFNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKA 240 Query: 467 CHHTLNQYYAAKK 479 + Y KK Sbjct: 241 RIRAIESYEKDKK 253 >gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus BV-PW1] Length = 474 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 224/482 (46%), Gaps = 26/482 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASL 65 MS +L R DLRI DN L+ A ++ I +FI T +Q +S F+ SL Sbjct: 1 MS-NLFIFRRDLRIIDNLGLHQALKETNT--IPIFIFTHQQVINNPYLSDNSFGFLIESL 57 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K +S+ Y + I+ + + K++ N+ + +RD L + Sbjct: 58 EDLSKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLE 117 Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---LIQNLVQADLRSLPVPA 181 + +I +D LLP GSI + YK++TPF L +N+ + + Sbjct: 118 FGKKENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFN 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + SNI + + + +L+ + Y +R+ + Sbjct: 178 KIKFINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQKEYSIKRNNLMYE- 236 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LS Y+ G +S R+ + + K+ D + ++L WREFY ++ +Y V Sbjct: 237 TTHLSAYIKFGCISIREVFYKFKKYLKD--------NNTLYSQLFWREFYTYITHYYQYV 288 Query: 302 CMGK-------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 G+ F +W+ + L WK+G TGFPI+DA +++L T G+MHNR R Sbjct: 289 LQGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSR 348 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 ++T++FL+K L+DWR GE+YF +L D D A NNGGWQ+ G + YFRI +P Q Sbjct: 349 LLTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQ 407 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQ 473 RFD +I+ WLP L ++ +++ + DL+ NY P+ D+KK +L Sbjct: 408 ANRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKT 467 Query: 474 YY 475 Y Sbjct: 468 YK 469 >gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515] Length = 478 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 217/483 (44%), Gaps = 27/483 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R DLRI DN AL A S+A + + +I + ++R + F+ SL ++ + Sbjct: 7 LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFDQNYSQDFNANSR-AWFLGNSLQELSR 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G + + + + + +N+ E E+ RD ++ L+ Sbjct: 65 NWETLGSRMII----DEGNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKKF 120 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I LL S ++ +++ +Q + I + Sbjct: 121 KIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNIGKLKDLEI 180 Query: 191 SNIPRFF---------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 ++ + P P + + ++K+ Y RD Sbjct: 181 GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKPGEIAAEKLLDQFINQDKIGSYASSRD 240 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 P GTS LS L G +S R+ WN L + + K +W EL+WREFY+H Sbjct: 241 FPDQNGTSFLSASLRFGTISIRKVWNSTLFTDLKNKNNHNKISIETWQKELVWREFYQHC 300 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + +P + G P+ + W + W G TG PIIDAAMRQLN+ GWMHNR R Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNSTGWMHNRCR 359 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MI ASFLVKDL+ +W++GEE FM L+DGDLA+NNGGWQW+AS+G D P RIFNP Q Sbjct: 360 MIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 K+FDP +I+ W+PEL+ VP + I + + NY IV+H + Y Sbjct: 419 TKKFDPICKYIKFWIPELSKVPNKDI---LNGEISDLEKNNYYGAIVNHNTQQRLFKDLY 475 Query: 475 YAA 477 Sbjct: 476 AHI 478 >gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans] gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans] Length = 542 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 115/520 (22%), Positives = 197/520 (37%), Gaps = 51/520 (9%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA + D +I VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + L +G + + + Q R+ ++ + E Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164 RD+ + + I S +PP + + + P R Sbjct: 116 ERDENIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214 L A L R +P F+ + + I + + Sbjct: 176 ADARLDDATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 + + E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +G +LIWRE++ + P+ + + LLQ W+ Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQRWRL 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415 Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +Y+H P Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEPWRM 475 Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP I+D A + + + Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103] Length = 541 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 124/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62 V L R DLR+ DN L A C+ + V+ F P Q F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ +D + + + +V + R Sbjct: 87 ESLVDLDGA-TQLNGGLVCLRGSD-EDCLRRIRDGGYEVKVLGFNEDYTPFALVRDRLLR 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180 Q V D L P ++ + Q Y V+TPF A + V Sbjct: 145 DYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAKPLLVNVR 204 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIP 237 ++ P + P + + R C E++ Y + RD Sbjct: 205 KVQSMLVSQPKKCLEHHLVDPALLYTHMPQVQDHGGRTEGLKRLACVERLKQYADVRDDI 264 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288 A TS LSP++ G +S R+ W+ + + + ++ Sbjct: 265 AGDCTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324 Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + PF P + +W + +A+K+G TG P++DAA+R L Sbjct: 325 LNSFIGQKDIVKATQPKQNAPFQPSYDDYKWRWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNGGW W++ G D+ PY Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADAQPY 444 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450 FR FN Q +RFDP F+ W+PEL VP +H + + Sbjct: 445 FRTFNAFRQSERFDPDCKFVFQWVPELAKVPPSVVHHWEEYCARARDKATGTYSRKRGAQ 504 Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + +YP PIVD K A + +Y K Sbjct: 505 GKAEEYPTSYPAPIVDIKAATKAVIEEYKKYGK 537 >gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine bacterium 580] Length = 478 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 99/482 (20%), Positives = 181/482 (37%), Gaps = 28/482 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++VWL+ DLR+TD+ LY A D + + ++I P R FI SL Sbjct: 4 KTNIVWLKRDLRLTDHAPLYEATCR-DEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K L+++ + ++ + Q +T +F + + + K++ Sbjct: 63 MEKILAKQSKQLSI----AYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKKI 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + + + +R Sbjct: 119 FNAKKIQWHEYQTNAV-------------IRGLNNRKTWEKQWNKVMREEIKTINLAEAN 165 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 + N P + F+ P G + F + + Y + P TS L Sbjct: 166 IISHNFPNYSIPKFRNDLNYQPGGCLPGQKEMHDFFETRGQDYFKFISKPDRSRTSCSRL 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPY++ G LS R+ + L + + + + + L W + + Sbjct: 226 SPYIAYGNLSMREVYQTLLKSWNKTG--WRRSMAALSSRLHWHCHFIQKYESEIDIEDLP 283 Query: 306 PFIPWTEKIE--WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + N + AW G TG+P+IDA+MR L G+++ R+R + SF Sbjct: 284 INRGYKDFPYKVINCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAMVVSFACH 343 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 ++ W++ ++ + LD + + Q A G + RI+NP+ Q + DP Sbjct: 344 YFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPSKQLQDHDPDTK 401 Query: 424 FIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKKQS 481 FIR W+ EL++ +YI P D S N YP P D + + N + KK S Sbjct: 402 FIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLLWQWKKSS 461 Query: 482 LL 483 L+ Sbjct: 462 LV 463 >gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis] gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis] Length = 576 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 128/476 (26%), Positives = 214/476 (44%), Gaps = 40/476 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYAS 64 +VW RNDLRI DN++L A +SD+ ++ V+ P + A ++ F+ Sbjct: 86 IVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIEC 144 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ +L ++G+ + L S ++ ++ E+ ++L+ Sbjct: 145 LADLKNNLMKRGLNLFIRH----GKPEDILPSLARAFSAHTVYAQKETCSEELIVERLVS 200 Query: 125 KRLQ------------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 K LQ + + S + + +A + VYT F K +I+ ++ Sbjct: 201 KALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCVIRGCLKI 260 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY---Y 229 + P P + G V + + I M +G + A K Sbjct: 261 PVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFWKKDLLKI 320 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E R+ + +++ SP+L+ G LSPR + +K + + L ELIWR Sbjct: 321 YKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENERQAND--STYWVLFELIWR 378 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R L Y + + E+ W++D L ++WK G TG+P+IDA M++L+T G+ Sbjct: 379 DYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMKELSTTGF 437 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R I SFLV+D+ VDWR+G E+F + LLD D SN G W + A GND R Sbjct: 438 MSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 496 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 F+ Q + +DP+G ++ +WLP+L + H P +Y IV K Sbjct: 497 FSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFP---------GKSYIEQIVPLK 543 >gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396] Length = 491 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 109/480 (22%), Positives = 182/480 (37%), Gaps = 24/480 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V +VW + DLR+TD+ LY A V +++A PE W Q R+ F+ +L Sbjct: 1 MTVRVVWFKRDLRVTDHGPLYHAARQ--GPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ ++LS+ G + D I L+ + V +L+ +++ + + Sbjct: 59 ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQW----CNRRNQ 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ P +L A + ++ + Q + + L Sbjct: 111 IVREWCRRNGVLWREWPVCGVLRRATAAERWQAAWKDFMAQTRYPSPKSLPMLGTSPLKP 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P I + + Y+ + +G S+LS Sbjct: 171 EAWPETIGADPTPCV--LRQAGGRAAAAQELKSFLQTRGINYFRDTHYPATSFEGGSRLS 228 Query: 247 PYLSIGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYLS GV+S R+ + L+ +L+ L R Y M P + Sbjct: 229 PYLSHGVISLREAVQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQQMEDEPGME 288 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + E D +AWK G TGFP+IDAAM+ L GW++ +LR + SF Sbjct: 289 SINLHKSFNGLREHQFDEAKFEAWKNGETGFPLIDAAMKALINYGWINYQLRGLLMSFAA 348 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L + WR + D D A + Q A G + +I+NP + R DP G Sbjct: 349 NQLWLHWREPALHMARLSTDYDPAVHFPLTQQFA--GTTGMFEQKIYNPVTESHRLDPAG 406 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYA 476 FIR L V Y+HAP + +YP+PI++++ A + A Sbjct: 407 KFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINNEDASLIAGQRLKA 466 >gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia] gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia] Length = 542 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 114/520 (21%), Positives = 196/520 (37%), Gaps = 51/520 (9%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA + D +I VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + L +G + + + Q R+ ++ + E Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQLRLHRICIEQDCEPIWN 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164 RD+ + + I S +PP + + + P R Sbjct: 116 ERDESIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214 L A L R P F+ + + I + + Sbjct: 176 ADARLDDATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 + + E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +G +LIWRE++ + P+ + + LLQ W+ Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQRWRL 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415 Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475 Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP I+D A + + + Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex] Length = 520 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 126/487 (25%), Positives = 198/487 (40%), Gaps = 32/487 (6%) Query: 1 MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHG 52 M MS V + RNDLR DN+ + A ++D V+ ++ P + + Sbjct: 1 MIRILKMSNRVAICLFRNDLRYHDNEVIALAHKSADF-VLPLYCFDPRHFEGTHHYKFPK 59 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ F+ S+ +++L ++G + ++ S +VT + Sbjct: 60 TGIFRTQFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTG-LKVTLILQTEVT 118 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + +L + + + + S L G + + YT FRK + + L Sbjct: 119 KEETDVEKRLQKICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIR 178 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-----------LRK 221 S+P + P Sbjct: 179 PEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSYL 238 Query: 222 FCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V Y E R+ +++ S +LS G LSPR+ L++ +L + Sbjct: 239 WDTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWELEKY--ELQRTKNQSTYW 296 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 EL+WR++++ + Y + + +W KD L +AW+ G TG P +DA M Sbjct: 297 VRFELLWRDYFKFVSMKYGDRIFYPNGMKGRRQ-QWKKDMELFKAWQMGKTGVPFVDANM 355 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 R+L GWM NR R ASFLVKDLL+DWR+G E+F S LLD D+ SN G W + A GN Sbjct: 356 RELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWNYVAGIGN 415 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454 D R FN Q +D +G +IR W+PEL +P IH+P K L Sbjct: 416 DPRE-NRKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSPWMLSSGALSAAKIRLGD 474 Query: 455 NYPLPIV 461 NYP P+V Sbjct: 475 NYPNPVV 481 >gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 493 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 108/485 (22%), Positives = 169/485 (34%), Gaps = 46/485 (9%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS LVW + DLR+ D+ AL+AA A A+F+ PE A+ F + Sbjct: 1 MSTLALVWFKRDLRVQDHAALHAAAQCDAAL--ALFVMEPEWIASPECDAQHVQFAADCV 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +Q+SL+ G+ D + + + R T LF + + Sbjct: 59 SALQESLAGLGLRLLVR----VGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDKRVA 114 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + A + Q + A +P + Sbjct: 115 HWCREQGVIWQEWPQNGVVRRLRDRAGWAARW---------QRRMDAPQLPVPQALRDAS 165 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TS 243 P+ + P D A PM G AL L F + Y P S Sbjct: 166 KPLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCS 225 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMA 296 +LS +L+ G LS RQ ++ L + L W + + Sbjct: 226 RLSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFMQKLE 285 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + + E + +AW G TGFP++DA MR LN GW++ R+R + Sbjct: 286 DEPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAM 345 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF L + WR + Q LD + + Q +G + R+++P Q Sbjct: 346 LVSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQA 403 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DPQG FIR W+PE YP PIV+ + A ++ YA Sbjct: 404 DHDPQGEFIRQWVPE------------WGTSA-------YPPPIVNERSAVKQAKDRIYA 444 Query: 477 AKKQS 481 ++ Sbjct: 445 IRQSP 449 >gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum Rt17-B1] Length = 436 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 203/466 (43%), Gaps = 36/466 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 + DLR+ DNKAL+ A NS +K+I +F+ ++ ++ F+ L + K Sbjct: 5 YLFKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFVVDVLKNISKK 63 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 I + E L+ + + L+ + + RD+ +EK + Sbjct: 64 -----INLYVFHGEDD----EILEFLFSKYKPDALYTAQSFSWQGEERDRNIEKVCRKCN 114 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + L + + Y + + + ++ L V Sbjct: 115 VKFHAVFDNYLADFRKIPYTKVFTPFYKKWLGYVESQEYEINIE-------ELKRKVVAL 167 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 ++ + + + + Y EQRD P + +S+LSPY+ Sbjct: 168 DLDTIDTILVKFPELNQKNEVFTYDYGFERLRSYDFAKYQEQRDFPGLDMSSRLSPYIRF 227 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 GVLS R+ N + + ++ +L WREF+ H+ + + F+ Sbjct: 228 GVLSIRKIHNIASKVSPE-----------FVRQLAWREFWYHIKYNFSEFNKLE-FLEKR 275 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + W D L + + TG+PI+DA +RQL WMHNR+R+I A+FLVKDLL+DWRI Sbjct: 276 RNVRWRYDEKLFEKFVNAQTGYPIVDAGIRQLKQENWMHNRVRLIVANFLVKDLLIDWRI 335 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE++F LLD D N G WQW+AS G D P RIFNP IQ ++FDP +I+ ++PE Sbjct: 336 GEKFFREYLLDYDEVLNVGNWQWSASVGPDPKP-LRIFNPMIQSEKFDPNCEYIKKYIPE 394 Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 L N IH P + LNY PIV+H +A T Y Sbjct: 395 LKNEENYKIHNPLEY------KLNYYEPIVNHYEAVQITKRLYKGM 434 >gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis] Length = 525 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/474 (25%), Positives = 203/474 (42%), Gaps = 27/474 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIY 62 L LRNDLR DN+ L+ A + +++ ++ P + Q + F+ Sbjct: 8 TALCLLRNDLRCHDNEVLHWA-QSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFRLRFLL 66 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ ++++L +KG + D + + V+ E +V + + Sbjct: 67 ESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVS-FHEEATKEELDVEKALI 125 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + ++ H Q+ VYT FRKA+ + + Sbjct: 126 RVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPVLKMEGQMK 185 Query: 183 RLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQR 234 L + NIP D+ + GE AL L+ + E Y E R Sbjct: 186 SLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQHYFWETNLVASYKETR 245 Query: 235 DIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + +++ +P+L++G +SPR ++++++ + + L EL WR+++R Sbjct: 246 NGLIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTANQ--STYWVLFELAWRDYFRF 303 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + Y + + W KD L AWK+G TG P +DA MR+L T G+M NR Sbjct: 304 VALKYGRKIFFPRGLQDKDI-SWKKDPKLFDAWKEGRTGVPFVDANMRELATTGFMSNRG 362 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R ASFL KDL +DWR+G E+F S L+D D+ SN G W ++A GND R FN Sbjct: 363 RQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLYSAGIGNDPRE-NRKFNMIK 421 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 Q +D G + R W+PEL + +H P + L +YP+PI+ Sbjct: 422 QALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQAGVSLGSSYPVPII 475 >gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] Length = 577 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 125/492 (25%), Positives = 204/492 (41%), Gaps = 56/492 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61 V +VW RNDLR+ DN+AL A S+A V+ V+ P + A ++ F+ Sbjct: 79 VAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRAQFL 137 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +++ L +KG+ E L S ++ +++ E+ ++ Sbjct: 138 IECLGDLKQILRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 193 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ K L+ I + P L + + NL D+ + A Sbjct: 194 LVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNL--PDVYTQFRKA 251 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH------------------------ 217 + V P + G Sbjct: 252 VESKSSVRNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGLSVTKSEKGMHFIGGENAA 311 Query: 218 ----ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + K+++ Y R+ + +++ SP+L+ G LSPR +K + Sbjct: 312 LGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVA 371 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + L ELIWR+++R L A Y + P +W++D L ++W+ G TG Sbjct: 372 ND--STYWVLFELIWRDYFRFLSAKYGNTIFH-LGGPRKVVSKWSQDQALFESWRDGRTG 428 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA MR+L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D ASN G W Sbjct: 429 YPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNW 488 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 + A GND R F+ Q K +DP+G ++ +WLPEL ++ + +N Sbjct: 489 TYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKE---------RRNFP 538 Query: 453 SLNYPLPIVDHK 464 +Y IV K Sbjct: 539 GASYIRQIVQLK 550 >gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis] gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis] Length = 492 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 190/490 (38%), Gaps = 34/490 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W R DLR+ DN +L A+ N + +++ E R ISA + +F+ L + Sbjct: 3 TSVHWFRKDLRLHDNPSLLASLDNC-STFFPIYVLDMESARASKISANRWNFLCECLEAL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L G + +I+ L + V +L + R+ E +RD +++ + Sbjct: 62 DRQLRVLGSRLFVIR----GRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAE 117 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + ++ L +L + + L V Sbjct: 118 NANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGAC 177 Query: 188 VTPSNIPRFFDYPFQAIDPM-------------FPIGEQNALHILRKFCKEKVYYYVEQR 234 +TP + Y + + GE A+ L ++K + Sbjct: 178 ITPVGLDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKKKFIKPPLS 237 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPY+ G LSP +RL E+ + L+WREF+ Sbjct: 238 ADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQ--RTMGSKPPETLYTNLLWREFFFAT 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P P +I W + L WKQG TGFP IDA MRQL GW+H+ R Sbjct: 296 ASTNPDH-HRMMGNPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLAR 354 Query: 355 MITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNP 411 FL + V W G + F LD + + N G W W + + + +VP+ + P Sbjct: 355 QAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVHGAVPW---YCP 411 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465 GK+ DP G +IR ++PEL +PT+++H P + +YP P+V+H + Sbjct: 412 VEVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQPMVNHLE 471 Query: 466 ACHHTLNQYY 475 + + Sbjct: 472 RRVVCVQKMQ 481 >gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia guttata] Length = 540 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 104/464 (22%), Positives = 179/464 (38%), Gaps = 30/464 (6%) Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 ++I P + + F+ SL + SL + + + Sbjct: 1 IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFK 56 Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVY 158 + VT+L + E RD + K + + ++S I+ + Sbjct: 57 EWGVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLT 116 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------M 207 +A+I + V + ++ Y +++ + Sbjct: 117 YKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV 176 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 + GE AL L K + K + +R + LSPYL G LS R + RL Sbjct: 177 WQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL 236 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 E + + S +L+WREF+ P + P +I W+++ L Sbjct: 237 WELYKKVKRNSTPPL-SLYGQLLWREFFYTAATNNPKFDRME-GNPICIQIPWDRNPEAL 294 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G F LLD Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D + N G W W + + +F + P G+R DP G +++ +LP+L P++YI+ Sbjct: 355 ADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYE 413 Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + K + ++YP P+V+H + + + +Q Sbjct: 414 PWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 457 >gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 526 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 113/489 (23%), Positives = 191/489 (39%), Gaps = 30/489 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64 + W+RNDLR+ DN+ L AC + + V+ ++ P+ ++ ++ I + Sbjct: 11 IYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTGIHRAKLILDA 69 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ SL +KG + + + + VT + + ++ E + + Sbjct: 70 VSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITKEETDVEASVF 129 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K + I L + + + ++ L +P L Sbjct: 130 KVCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKLNPIPDKISSL 189 Query: 185 TGPVTP------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + + + + Y E Sbjct: 190 PNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEVDAIKRLNEYLWGNNAILTYKE 249 Query: 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ +++ SP+L++G LSPR ++++K+ IK + + ELIWR+++ Sbjct: 250 TRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTYWVVFELIWRDYF 309 Query: 292 RHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + V W +D +L W G TG P +DA M++L GWM Sbjct: 310 KFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDANMKELLATGWMS 369 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASFLVKDL +DWR+G E+F S L+D D+ SN G W + A GND R FN Sbjct: 370 NRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDVCSNYGNWNYIAGIGNDPR-SNRKFN 428 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464 Q +D +G ++R WLP L + H P DL NYP PI+ Sbjct: 429 VIKQAADYDEEGDYVRTWLPVLKKL--GICHTPWRLSASELNAGGVDLGKNYPHPIIVAP 486 Query: 465 KACHHTLNQ 473 + H L Sbjct: 487 EWAKHALKM 495 >gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster] gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName: Full=Blue light photoreceptor gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster] gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster] gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster] gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster] gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct] gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct] Length = 542 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 114/520 (21%), Positives = 198/520 (38%), Gaps = 51/520 (9%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA + D +I VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + L +G + + + Q R+ ++ + E Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164 RD+ + + I S +PP + + + P R Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214 L A L R P F+ + + I + + Sbjct: 176 ADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLD 235 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 + + E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +G +LIWRE++ + P+ + + +LLQ+W+ Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRL 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415 Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475 Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP I+D A + + + Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster] Length = 542 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 114/520 (21%), Positives = 194/520 (37%), Gaps = 51/520 (9%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA + D +I VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + L +G + + + Q R+ ++ + E Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164 RD+ + + I S +PP + + + P R Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--- 221 L A L R P F+ + + I + Sbjct: 176 ADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLD 235 Query: 222 -------FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +G +LIWRE++ + P+ + + LLQ+W+ Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLLQSWRL 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415 Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP GT+I+ ++PEL NVP +++H P Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 475 Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP I+D A + + + Sbjct: 476 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515 >gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 639 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 112/548 (20%), Positives = 174/548 (31%), Gaps = 84/548 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + +F P + + F+ + K Sbjct: 7 IYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + +VT L + + + RD ++ + + Sbjct: 67 SITKLNPKSKLLLLR----EAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVVTRAAK 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I+ + + L + + G Sbjct: 123 EAGVEVIVRTGRTLWDSDQIVEKHGGKPTMSITQLQQAGARLGEVRKPIPAPKHLPDPGE 182 Query: 188 VTPSNIPRFFDYPFQAIDPMFP---------IGEQNALHILRKFCKEKVYYYVEQRD--- 235 + G I R Sbjct: 183 MPVDFEQEQPKTKPDFNSEQRTEKDQTYTKIAGPNGDFAIETMEELGFPSATTPHRGGET 242 Query: 236 ---------------------------IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 Q T+ LSP+L G LS R+ + R++E Sbjct: 243 LALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTLLSPFLHFGALSVREFYWRVQEVVD 302 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 + S + +L++R+ Y A V M P I W+ S Sbjct: 303 AYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVKNPHCRFIPWHLPSKRDPKTGL 362 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 VTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLGRHAVACFLTRGGCY 422 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW + T S YFR ++P G+++D QG FIR Sbjct: 423 IDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKQGDFIR 481 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471 ++PEL N+ +YI+ P + YP P+ D K L Sbjct: 482 RYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNDVQEGTYPKPMFDFSKRRDACL 541 Query: 472 NQYYAAKK 479 A K Sbjct: 542 AAMKTAYK 549 >gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 171/481 (35%), Gaps = 45/481 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LVW + DLR TD+ L AA A + +++ E + FI SLL+++ Sbjct: 5 ALVWFKRDLRCTDHAPLAAAARCRSA--VGLYVLEDEWLGAPEWDPQHWEFIRQSLLELR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L+ +G+ + L T+L + + Sbjct: 63 DNLAARGMPLLLRR----GAMPLVLAQLWRDYPFTELLSHEETGSAWTYARDRRVAA--- 115 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + + + + + T P+ Sbjct: 116 ------WCRERGIAWRQWPQFGVVRPLAQRDGWAEAWERFMARPPLAAVGQLPGTTTPLD 169 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247 +IP A P+ P GE A L F E+ Y+ P A +G S+LS Sbjct: 170 GGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHTLSSPLLAERGCSRLSA 229 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPS 300 +L+ G +S RQ R ++ +L + +L+ L W + + P+ Sbjct: 230 HLAYGTVSMRQVVQRTRQRLRELRKEGSAEAGERARHLRGFLSRLHWHCHFIQKLEDEPA 289 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + E + AW +G TGFP +DA MR L GW++ R+R + SF Sbjct: 290 SEFHNFSRSYDGLREDDWSEERFLAWAEGRTGFPFVDACMRCLRATGWINFRMRAMLVSF 349 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + WR + Q LD + + Q +G + RI++P Q DP Sbjct: 350 ASYHLWLHWRGTGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPNKQWADQDP 407 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +G F+R WLPE +YP PIVD ++A + +A ++Q Sbjct: 408 RGEFVRRWLPE------------WGSP-------DYPPPIVDEQRAARIAKERIWARRRQ 448 Query: 481 S 481 Sbjct: 449 P 449 >gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 592 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 120/488 (24%), Positives = 206/488 (42%), Gaps = 50/488 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61 V +VW R+DLR+ DN+AL A S A V+ V+ P ++ A ++ F+ Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L ++++L ++G+ + L ++ +++ E+ + Sbjct: 156 IECLGDLKQNLQKRGLDLLVRH----GKPEDILPEIAKAVSAHTVYAHKETCSEELLVEH 211 Query: 122 LLEKRLQHRVICKS-------------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 L+ + L+ +I + + + + + VYT FRKA+ Sbjct: 212 LVRRGLEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESK 271 Query: 169 LVQA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------LH 217 P P+ L +IP + Sbjct: 272 SSVRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGMRFVGGESAALGRV 331 Query: 218 ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + +++ Y E R+ + +++ SP+L+ G LSPR ++ + Sbjct: 332 HEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRVAND-- 389 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 + L ELIWR+++R L Y + P +W++D L ++WK G TG+P+I Sbjct: 390 STYWVLFELIWRDYFRFLSEKYGNSIFH-LGGPRKVASKWSQDQALFESWKDGRTGYPLI 448 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D ASN G W + A Sbjct: 449 DANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGA 508 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 GND R F+ Q K +DP G ++ +WLPEL ++ + + P +Y Sbjct: 509 GVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSLAKERRNFP---------GASY 558 Query: 457 PLPIVDHK 464 +V K Sbjct: 559 IKQVVPLK 566 >gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces odontolyticus F0309] Length = 475 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 138/494 (27%), Positives = 208/494 (42%), Gaps = 53/494 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59 M+ L+WLR+DLR+ D+ AL AAC +D V+A++I + + A Sbjct: 1 MTT-LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + SL Q+ L+ GI + D+ + + T + + R+Y R Sbjct: 60 WYHRSLQQLAPRLADLGIPLVF----TRGDAANVMRRVVDALQPTVVHWTRRYAPAACRL 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D +++ L R S S+L P + Y+V+TPF A+ + + L Sbjct: 116 DAAIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLTSLLPEPSP 175 Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 R L + + + + + GE A L Sbjct: 176 IGERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAIDS 235 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y + TS++SP L G LSPRQ + W + Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAARTSTASGEDIVA-----WTRQ 290 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WREF HL+ P P + + D HL +AW+QG TG ++DA MRQL Sbjct: 291 LYWREFSWHLLHH-REHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLW 349 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNR+RM+ AS L K++L W+ GE++F L+D D A+N WQW A G D+ P Sbjct: 350 QTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAP 409 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 YFRIFNP +Q RFDP+ ++R W+PE L + +S +VD Sbjct: 410 YFRIFNPDLQRTRFDPRSRYVRRWIPE--------------GLARPVVS------VVDLA 449 Query: 465 KACHHTLNQYYAAK 478 ++ L Y + Sbjct: 450 ESRREALAAYEQVR 463 >gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 541 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 125/513 (24%), Positives = 197/513 (38%), Gaps = 44/513 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWR---QHGISARQSHFIY 62 V L R DLR+ DN L A C + V+ F P Q F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ +D ++ + + +V + R Sbjct: 87 ESLIDLDGA-AQLNGGLVCLRGSD-EDCLQRIRDSGYEVKVLGFNEDYTPFALARDRLLR 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPV 179 Q V D L P ++ ++ Q Y V+TPF + V L Sbjct: 145 AYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHAHRVAVPLLVNVS 204 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIP 237 + + P M + + R C E++ Y + RD Sbjct: 205 KVQSMLVSQPKKRMEHHLVDPALVYAHMPQVQDHGGRTEGLKRLACVERLKQYADARDDI 264 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288 A TS LSP++ G +S R+ W+ + + ++ Sbjct: 265 AGDRTSHLSPHMKCGTVSTREVWHASVRALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324 Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + PF P + +W+ + +A+K+G TG P++DAA+R L Sbjct: 325 LNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW HNR R++ ++F VK L +DWR E +F + +D D A+NNGGW W++ G D+ PY Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANNNGGWLWSSGQGADAQPY 444 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------------- 450 FR FN Q +RFDP FI W+PEL VP +H + + Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCARARGKATVTHSRKRNGQ 504 Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + S +YP PIVD K A + ++ K Sbjct: 505 GNAEEYSTSYPAPIVDIKAATKAVVEEFKKYGK 537 >gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum tricornutum CCAP 1055/1] Length = 610 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 108/508 (21%), Positives = 187/508 (36%), Gaps = 65/508 (12%) Query: 9 VHLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------------Q 50 V L W R+ DLR+ DN AL + +++ V VF + Q Sbjct: 51 VVLHWFRHGDLRLLDNPALIHSSKTAESCV-PVFCFDDSVYGNDNRTPDTRAPHSNDRGQ 109 Query: 51 HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------- 103 R++ F+ S+ +++SL +G + Sbjct: 110 LKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAH----GKPAQVFQRLVDAWPAVPAADTA 165 Query: 104 ----------TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 + R+ +L +R + + + ++ L Sbjct: 166 APNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPFATDLA 225 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP-----------FQ 202 + ++ Q + L + P Q Sbjct: 226 NMPDTFTPFRNKVEKNCQIGTPLPVPKQLSLPENFPSALKQGLEYLPTLKELGYTDAQIQ 285 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261 ++ G + + + + + Y E R+ + +++ SP+L+ G +SPR Sbjct: 286 QVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLAHGNVSPRYVAA 345 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--IPWTEKIEWNKD 319 + ++ + + + + EL+WR+F + + W+ Sbjct: 346 QCRKYEEERVE--NKSTYWVVFELLWRDFCKFFATKHGDAIFYPYGTTERTDRHKPWSTF 403 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 LQAW++G TG+P++DA MR+L G+M NR R ASFL +L DWR G ++F S Sbjct: 404 GRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFLAINLNHDWRCGGDFFESH 463 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D+ SN W A+ G R FN + Q K +D G ++RHWLPEL VP ++ Sbjct: 464 LLDYDVYSNWVNW--CAAAGMTGGRLNR-FNISKQSKDYDQHGDYVRHWLPELAKVPNEF 520 Query: 440 IHAPHSWL------DKNDLSLNYPLPIV 461 +H P + L ++YP PIV Sbjct: 521 VHEPWKMTSFQQMEYECKLGVDYPNPIV 548 >gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium aromaticivorans DSM 12444] Length = 454 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 141/483 (29%), Positives = 214/483 (44%), Gaps = 50/483 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFIYA 63 +VW R D + + VI V+I + R + +++ Sbjct: 6 IVWFRRD---------LRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHH 56 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL ++ SL + G + E L + + + + YE +K Sbjct: 57 SLAELDASLRKLGSRLILRR----GKCHEELAAVRREAGARVVHALQHYEPWWRNAEK-- 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + + L P GS+ + YK+YTPF AL++ + A P R Sbjct: 111 --AVAKTIRLVLHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPE---R 165 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-------KFCKEKVYYYVEQRDI 236 L P D+ P + G + + ++V Y E R++ Sbjct: 166 LEAPAVWPTSDALDDWKLLPTAPDWAGGFRETWTPGENGAEERLQDFADRVARYGETRNL 225 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P+I+GTS+LSP+L G +SP W+R+ +L EL WR++ ++++ Sbjct: 226 PSIEGTSRLSPHLHFGEISPATIWHRVVNAGG--------SVDVFLGELGWRDYAQNVIV 277 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P +++EW D L+AW+QG TG+PI+DA MR+L GWMHNR+RMI Sbjct: 278 QFPDYGSRNA-REAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMI 336 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 ASFLVK LL+DWR GE +F L+D D ASN WQW A TG DS + RI P Q Sbjct: 337 AASFLVKHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSP 396 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 +FD G +IR W+PEL ++ + IH P YP IV H +A L + Sbjct: 397 KFDAAG-YIRQWVPELAHLSDRDIHDP------AVPPRGYPAKIVSHSEARARALAAHDR 449 Query: 477 AKK 479 K+ Sbjct: 450 MKQ 452 >gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 656 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 111/530 (20%), Positives = 174/530 (32%), Gaps = 69/530 (13%) Query: 11 LVWLRNDLRITDNKALYAAC---HNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60 LVW R DLR+ DN A+ AA + K+ I ++I + + + F Sbjct: 92 LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIV--HRPKIMLCGVNRFQF 149 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS------------------------ 96 + S+ + +L+ +G + L + Sbjct: 150 LLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAASEPFAIDRDNRAV 209 Query: 97 -YCLQQRVTKLFYNRQYEIN-------EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 Q V + + + + L P + Sbjct: 210 ALARQLGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALAMQPKPPKPLPTPEKVP 269 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 ++Y L VT +PF Sbjct: 270 APVYLPSELYQQVIDYWQNRL--KPDSIAGPEQQFTLPEVTDFGFVAPERHPFIYGGEQI 327 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 +G + T+ LSPYL G +SPR + ++ Sbjct: 328 ALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHVRGIQE 387 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHL---------------MAFYPSVCMGKPFIPWTEK 313 + S +L+WREF+ P Sbjct: 388 HHAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEESPTCLQIDWRWHTIPEREEDMT 447 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372 + QAW G TGFP IDA M QL GWMH+ R A FL + DL + W G Sbjct: 448 DDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRG 507 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E F +L+D D + N G W W +++ S YFR+++P+ GK++DP+G FIR ++P L Sbjct: 508 LEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWDPEGLFIRKYVPAL 566 Query: 433 NNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +P +YI+ P + +YP PIVDHK A ++ Sbjct: 567 SKMPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRSMAGMKK 616 >gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta] gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta] Length = 542 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 113/514 (21%), Positives = 192/514 (37%), Gaps = 48/514 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D V I VFI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L + +G + + + Q R+ +L + E RD+ + Sbjct: 67 IDDQLQEATDGRGRLLVFE-----GEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETI 121 Query: 124 EKRLQH-------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + + + +PP + + + P R L Sbjct: 122 RALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI----------LR 220 A L R P F+ + + I + + Sbjct: 182 DATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVE 241 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274 + E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 +G +LIWRE++ + P+ + LLQ W+ G TGFP Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRWRLGQTGFP 361 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 362 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWM 421 Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 W +S+ + + + P KR DP GT+I+ ++PEL VP +++H P + Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWRMSAEQQE 481 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP I+D A + A + Sbjct: 482 QYECLIGVHYPERIIDLTMAVQRNMLAMKALRNS 515 >gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba] gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba] Length = 542 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 114/520 (21%), Positives = 195/520 (37%), Gaps = 51/520 (9%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA + D +I VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 SL + L +G + + + Q R+ ++ + E Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFE-----GEPANIFRRLHEQVRLHRICIEQDCEPIWN 115 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-------------LPPGSILNHALQMYKVYTPFRKA 164 RD+ + + I S +PP + + + P R Sbjct: 116 DRDESIRFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPT 175 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------N 214 L A L R P F+ + + I + + Sbjct: 176 ADARLEDATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLD 235 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270 + + E+ +Y Q +S +L G LS R+ + + + F ++ Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRA 295 Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +G +LIWRE++ + P+ + LLQ W+ Sbjct: 296 CVRGVQMTGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRWRL 355 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387 G TGFP+ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + Sbjct: 356 GQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSV 415 Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP+GT+I+ ++PEL NVP +++H P Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEPWRM 475 Query: 447 L------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP I+D A + + Sbjct: 476 SVEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKTLRNS 515 >gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107] Length = 479 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 217/474 (45%), Gaps = 24/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R DLR+ DN A AA + VI VFI + A + L + K Sbjct: 12 IWWVRRDLRLADNPA-LAAAVAAGVPVIPVFIFETL---DEDLGAAPRFRLGLGLAHLAK 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q+G + + E L + + + R Y+ + RD ++++L+ + Sbjct: 68 ELEQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I KSF +L P ++ MY+VY+P+ K++ L+ A R + Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAHWPTS 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L +F +V Y + RD PA+ TS L Sbjct: 184 DDLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR+ W+ E GA +L E++WREF HLM P + Sbjct: 244 SENLAWGEISPRRMWHHGLEARRAGKS----GAEHFLKEIVWREFAYHLMFHTPHILTRN 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W +D + AW++G TG+ +DAAMR+L G MHNR RMI ASFL K + Sbjct: 300 WRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+ E P Q Y P SW + P +D K+ L Y Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWELSPQDTRA--EPFLDLKEGRARALEAY 471 >gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 110/512 (21%), Positives = 190/512 (37%), Gaps = 41/512 (8%) Query: 10 HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL A + +I +FI E + + F+ SL Sbjct: 6 NVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65 Query: 68 VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L +G + R+ K+ + + E RRD + Sbjct: 66 IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 I S L + T ++ R + P Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDWDGV 185 Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234 + F+ +P ++P + +++ ++++R Sbjct: 186 EFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEER 245 Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PKS 276 + ++ +S +L G LS R+ + R+ + F + I+ + Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQRVHMA 305 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 G +LIWRE++ + P + + LQ+W+ G TGFP+I Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQLQSWRSGQTGFPLI 365 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DAAMRQL GW+H+ LR A+FL + W G F+ LLD D + G W W Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLDADWSVCAGNWMWV 425 Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 +S+ + + + P KR DP+G +IR ++PEL NVP +YIH P Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIHEPWRMPQELQENC 485 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD K ++ ++ Sbjct: 486 ECVIGVQYPERIVDLAKVSKRNVHAMQTLRQS 517 >gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus DX253] Length = 520 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 117/522 (22%), Positives = 199/522 (38%), Gaps = 78/522 (14%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------QHGISA 55 M LVW R DLR+ DN+AL A ++ V+ P ++ + Sbjct: 1 MKTALVWFRTDLRVRDNRALAVASEA--ERLRCVYCFDPREFGSREYGGKDSFRYEKTGS 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ S+ ++ SL ++G E + S + ++ Sbjct: 59 HRTRFLRESVEALRISLRERGNELVVRH----GRPEEVVPSLAADIDADLVCFHALPTPE 114 Query: 116 EVRRDKLLEKRLQHRVIC-----KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E ++ + +RL +S L P + ++ +T FR+ + ++ Sbjct: 115 ERAVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDA 174 Query: 171 Q-----------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH-- 217 + A + G + P A + P Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDERRVLD 234 Query: 218 ------------ILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + ++++ Y E R+ +S+LSP+L+ G LSPR + ++ Sbjct: 235 FEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFETVQ 294 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---- 320 + + + + EL+WR+F++ A + S + I N + Sbjct: 295 RYERERVENE--STYWLVFELLWRDFFQFQFAKHGSQPFKRRGIRRRTIDWRNGEGDGDS 352 Query: 321 ----------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + WK+G TG P +DA MR+LN G+M NR R AS L D Sbjct: 353 GHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNVASVLAND 412 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR G YF ++L+D D ASN G W + A GNDS R F+ Q + +DP + Sbjct: 413 LRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDSRN--RSFDVLWQAEHYDPDAAY 470 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 +++WLPEL +VP + H P + L YP P+ Sbjct: 471 VKYWLPELRDVPDEKAHEPWRLTAEERDRYGVTLGEEYPEPL 512 >gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. AzwK-3b] Length = 473 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 145/466 (31%), Positives = 212/466 (45%), Gaps = 25/466 (5%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80 +D+ AL AA VI VFI + A + SL + + L G Sbjct: 18 SDHTALGAAIARG-GPVIPVFILDDL---AEMLGAAPKWRLGLSLEDMSRRLEAMGSRLI 73 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDS 139 + D+ + L + + ++++R Y+ V RDK ++ L+ + +S++ Sbjct: 74 LRR----GDATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGH 129 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTGPVTPSNIPR 195 ++ P ++ A Y+VYTPF + + + A L+ + + Sbjct: 130 LMFEPWTVETGAGGFYRVYTPFWRTVKERDVPEPEPAPSHIPAPKDWPLSDALEDWRLAA 189 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 D P +GE+ A L F + Y RD+PA GTS LS L++G +S Sbjct: 190 AMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLALGEIS 249 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 PR+CW+ + GA +WL EL+WREF HL P + W Sbjct: 250 PRRCWHAGMRAMHEGK----PGAETWLKELVWREFAYHLAWHTPRIVNRNWREDWDAFPW 305 Query: 316 WNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + H AWKQG TG P +DAAMR++ G MHNR RMI AS+L K LL WRIG++ Sbjct: 306 NEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSHWRIGQK 365 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +F + L D D ASN GWQW+A +G D+ PYFR+FNP Q ++FDP+ ++ W+ E Sbjct: 366 WFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRWIAEGRR 425 Query: 435 VPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 PT + P W D YP PIV K L Y Sbjct: 426 NPTDTALSYFEAIPRKWGLSAD--DIYPEPIVSVKDGRAKALAAYE 469 >gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana] Length = 525 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+ Sbjct: 41 VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 99 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E L S +F +++ EV ++L Sbjct: 100 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 155 Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L+ + + S + + + VYT FRK++ +P+ Sbjct: 156 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 215 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233 ++P P + M +G ++A K Y E Sbjct: 216 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 275 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R Sbjct: 276 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 333 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + P + +W++D L ++W+ TG+P+IDA M++L+T G+M NR Sbjct: 334 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 392 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+ Sbjct: 393 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 451 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 Q + +DP+G ++ WL +L +P + H P + Sbjct: 452 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 487 >gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana] gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana] Length = 526 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+ Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 100 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E L S +F +++ EV ++L Sbjct: 101 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 156 Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L+ + + S + + + VYT FRK++ +P+ Sbjct: 157 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 216 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233 ++P P + M +G ++A K Y E Sbjct: 217 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 276 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R Sbjct: 277 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 334 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + P + +W++D L ++W+ TG+P+IDA M++L+T G+M NR Sbjct: 335 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 393 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+ Sbjct: 394 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 452 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 Q + +DP+G ++ WL +L +P + H P + Sbjct: 453 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 488 >gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 112/507 (22%), Positives = 187/507 (36%), Gaps = 59/507 (11%) Query: 10 HLVWLRN-DLRITDNKALYA------------ACHNSDAKVIAVFIATPEQW-------- 48 ++ R DLR+ DN AL A + ++ VF+ + Sbjct: 11 NIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAKSR 70 Query: 49 --RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106 R++ F ++ ++ +L ++G S + Sbjct: 71 LGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSPESILARIATAAVESSGDKGA 130 Query: 107 FYNRQYEINEV---------------RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 N + + K K V + D LP + Sbjct: 131 LINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPETLPFDGGVFGV 190 Query: 152 LQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 ++ + +A Q + A+ + +P + G A+ + Sbjct: 191 PDIFSPFRKDVEAKCQIVNDANNKCSLKYMPTLSDLGYNAEDIESVSSVDSRTALPVNYR 250 Query: 210 IGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 GE AL ++ + +K Y + R+ + +++ +P+L++G +SPR Sbjct: 251 GGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIARECSRY 310 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHLL 323 + + + EL+ R+ ++ + + +W D + Sbjct: 311 EEQRV--QNKSTYWVVLELLIRDHFKFFAKKHGDKVFYLTGNIGKQRGSERKWGMDRKKI 368 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 QAW+ G TGFP++DA MR+L G+M NR R ASFL DL +DWR G EYF LLD Sbjct: 369 QAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLLDY 428 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 D+ SN G W ++ G R FN Q K +D G ++R W PEL NVP ++IH+P Sbjct: 429 DVHSNWGNW--CSAAGMTGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKNVPDKHIHSP 485 Query: 444 HSWLD--------KNDLSLNYPLPIVD 462 K +YP PIVD Sbjct: 486 WEMSGEMMEECGVKIGHGGDYPSPIVD 512 >gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis] gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis] Length = 539 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 109/514 (21%), Positives = 188/514 (36%), Gaps = 48/514 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL AA + D +I +FI E + + F+ SL Sbjct: 7 NVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLQD 66 Query: 68 VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L + +G + + + R+ K+ + E RD+ Sbjct: 67 IDMQLQKATEGRGGLLMCQ-----GQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEAT 121 Query: 124 EKRLQHRVI-------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + I +D ++ + ++T L + Sbjct: 122 KSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNFE 181 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--------KVY 228 A P +G ++ + + KV Sbjct: 182 GVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKVE 241 Query: 229 YYVEQRDIPAIQG--------TSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKP 274 + +R +S +L G LS R+ + + + F ++ Sbjct: 242 QHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGVQ 301 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 +G +LIWRE++ + P + D+ LQ W+ G TGFP Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWSKPDADQLQRWRLGQTGFP 361 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +ID+AMRQL GW+H+ LR A+FL + L +W +G E+F+ LLD D + G W Sbjct: 362 LIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDADWSVCAGNWM 421 Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 W +S+ + + + P KR DP G +I+ ++PEL NVP ++IH P + Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEPWRMSSEQQE 481 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 L +YP I+D A A + Sbjct: 482 RYECLLGFHYPQRIIDLSLASKRNTMAMKALRNS 515 >gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus] gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus] Length = 539 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 113/510 (22%), Positives = 189/510 (37%), Gaps = 61/510 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55 M + + W R LR+ DN AL AA + + VFI P R + Sbjct: 1 MSSKQ---TAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDPGIIRWLRVGP 57 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + + + +E + VT L + E Sbjct: 58 NR---------------------LHVVR----GNPVEMFPELFREWNVTLLTFEHDIEPY 92 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 V+RD + + + + + S+ + + T + + ++ + Sbjct: 93 SVKRDATVRELARQAKVEVQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGP 152 Query: 176 SLPVPAIRLT-------------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222 + P + + FP GE AL L+ + Sbjct: 153 IGVPDKVPAESVPEKDKRERKDGKCYDPPTLDELKVRQEDLGECKFPGGETEALRRLQDY 212 Query: 223 CKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 K + ++ + T+ LSPY+ G LS R LK+ K Sbjct: 213 MSRKSWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAELKKVL--AGQKHSQPP 270 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 S + +L+WREFY A P+ ++ W + L AW G TG+P IDA Sbjct: 271 VSLVGQLMWREFYYCAAAAEPNFDKM-VGNSVCLQVPWETNPEHLAAWTHGRTGYPFIDA 329 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GW+H+ R A FL + DL + W G+ F LLD D A N G W W ++ Sbjct: 330 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSA 389 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451 + +FR+++P GK+ DP+G +I+ ++PEL P I+ P + Sbjct: 390 SAFFHQ-FFRVYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCI 448 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 + +YP IV H++ +++ A +++ Sbjct: 449 IGKDYPHRIVIHEEISKKNISRMSEAYRKN 478 >gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC 17982] Length = 475 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 205/493 (41%), Gaps = 53/493 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59 M+ L+WLR+DLR+ D+ AL AAC +D V+A++I + + A Sbjct: 1 MTT-LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + SL Q+ L+ GI + + D+ + + T + + R+Y R Sbjct: 60 WYHRSLQQLAPRLADLGIPLVFAR----GDAANVMRQVVDALQPTVVHWTRRYAPAACRL 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D +++ L+ R S S+L P + Y+V+TPF A+ + L Sbjct: 116 DAAIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSP 175 Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 R L + + + + + GE A L Sbjct: 176 IGERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAIDS 235 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y + TS++SP L G LSPRQ + W + Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAARTSTASGEDIVA-----WTRQ 290 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WREF HL+ P P + + D HL +AW+QG TG ++DA MRQL Sbjct: 291 LYWREFSWHLLHHR-EHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLW 349 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A G D+ P Sbjct: 350 QTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAP 409 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 YFRIFNP +Q RFDP+ ++R W+PE P P+VD Sbjct: 410 YFRIFNPDLQRTRFDPRSRYVRRWIPEGLARPVV--------------------PVVDLA 449 Query: 465 KACHHTLNQYYAA 477 ++ L Y Sbjct: 450 ESRREALAAYEQV 462 >gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae] gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae] Length = 542 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 116/516 (22%), Positives = 194/516 (37%), Gaps = 43/516 (8%) Query: 7 MSV---HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFI 61 M+ +++W R+ LR+ DN AL AA D ++ VFI E + + F+ Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFL 60 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + + + Q R+ K+ + E RD+ Sbjct: 61 LDSLQDIDDQIQTL-TDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDE 119 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ------------N 168 + I S P S++ + + +Q Sbjct: 120 TIRSLCHELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDAR 179 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----------NALHI 218 L A + +R G + P F+ + + I + + Sbjct: 180 LEDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLK 239 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LI 272 + + EK YY Q + +SP+L G LS R+ + + + F ++ Sbjct: 240 VEQHAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRG 299 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 +G +LIWRE++ + P+ +D LQ W+ G TG Sbjct: 300 VQMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLSIPWAKRDETQLQKWRLGQTG 359 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP+IDAAMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G Sbjct: 360 FPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDADWSVCAGN 419 Query: 392 WQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---- 446 W W +S+ + + + P KR DP G +IR ++PEL NVP ++IH P Sbjct: 420 WMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEPWRMNLQQ 479 Query: 447 --LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP ++D KA + + Sbjct: 480 QEQYECLIGVHYPDRLIDLSKAVKGNMLAMKTLRDS 515 >gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 566 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 208/456 (45%), Gaps = 25/456 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 + ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+ Sbjct: 84 ITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 142 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E L S +F +++ E+ ++L Sbjct: 143 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGAHTVFAHKETCSEELHVERL 198 Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L+ + + S + + + VYT FRK++ +P+ Sbjct: 199 VNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 258 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233 + ++P P + M +G ++A K Y + Sbjct: 259 SLGPIPSVDDWGDVPTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKDT 318 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R Sbjct: 319 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 376 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + P + +W++D L ++W+ G TG+P+IDA M++L T G+M NR Sbjct: 377 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDGKTGYPLIDANMKELYTTGFMSNR 435 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+ Sbjct: 436 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 494 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 Q + +DP+G ++ WL +L +P + H P + Sbjct: 495 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 530 >gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii ATCC 27126] Length = 543 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 102/516 (19%), Positives = 186/516 (36%), Gaps = 48/516 (9%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 + SV ++W + DLR+ D++ LY A + ++ +F P + R FI S Sbjct: 6 SKQSVTVIWFKRDLRLRDHEPLYRAVEK-NENILPLFCWEPSLIADPHMDMRHWQFIQQS 64 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + L G C + I+ L+ ++ + ++ ++ + Sbjct: 65 IDDINAQLPS-GARLLTLHC----EVIDALELIAQHYAISTVRSYQEIGLSVTHNRDISV 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + F + + + Sbjct: 120 SNYLKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNI 179 Query: 185 TGPVTPSNIPRFFDYPF-----------------------QAIDPMFPIGEQNALHILRK 221 + FD + ++ M P GE+ A +L+ Sbjct: 180 NTACKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLDKLKKLNKMQPGGERRAWQVLKD 239 Query: 222 FCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 F + YY + P S+LSPYL+ G LS +Q + ++ + + P S Sbjct: 240 FFDARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRK 299 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEKIEWNKDSHLLQA------WKQGY 330 W L H + + + P E +A W G Sbjct: 300 QWSRALAALTSRLHWHCHFIQKFESEHSIEWRPMNSGYENFPFIDGPEAERRFYLWTMGL 359 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P++DA MR L G+++ R+R + SFL L V W Y +Q LD + + Sbjct: 360 TGYPLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGIHYP 419 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448 Q AS + R++NP Q + DP+G FI+ W+PEL +P++ +HAPH Sbjct: 420 QIQMQAS--VTGIHTVRLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLLPPLE 477 Query: 449 ----KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 D+ +Y P+VD + T + + +++ Sbjct: 478 AQMLDFDVERDYVEPLVDITENNRITAKRLWDYRER 513 >gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni] Length = 547 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 109/512 (21%), Positives = 187/512 (36%), Gaps = 41/512 (8%) Query: 10 HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL A +I +FI E + + F+ SL + Sbjct: 6 NVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAE 65 Query: 68 VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L +G + R+ K+ + + E RRD + Sbjct: 66 IDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDDSVRA 125 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 I S L + T ++ A R + P Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVEIIGAPPRPVEDPEWDGV 185 Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234 + F+ +P +FP + + +++ ++ +R Sbjct: 186 EFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHLAERLKVEER 245 Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------KPKS 276 + ++ +S +L G LS R+ + + + F + I + Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEAFYHRIHMA 305 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 G +LIWRE++ + P + + LQ+W+ G TGFP+I Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIPWAPPNQEQLQSWRSGQTGFPLI 365 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DAAMRQL GW+H+ LR A+FL + W G +F+ LLD D + G W W Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWMWV 425 Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 +S+ + + + P KR DP+G +IR ++PEL +P +YIH P Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQEYIHEPWRMPQEMQENY 485 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD K ++ Sbjct: 486 ECVIGVQYPERIVDLAKVSKRNTLAXQTLRQS 517 >gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378] Length = 302 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 119/258 (46%), Positives = 158/258 (61%), Gaps = 13/258 (5%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD+PA+ TS LS YL G +S R W L++E G ++ EL WR+ Sbjct: 48 YDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQKEEA------TEGRATFEKELCWRD 101 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + +++ +P IEW + + W+ G TGFP++DAAMRQL GWM Sbjct: 102 -FYNMIYVSFPKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWM 160 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRMITASFL KDLL+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIF Sbjct: 161 HNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIF 220 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NPT Q ++FDP GTFIR ++ EL ++P ++IH P + L +YPLPI+DH Sbjct: 221 NPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDH 280 Query: 464 KKACHHTLNQYYAAKKQS 481 K+ + +Y +K+ S Sbjct: 281 KERRKLAIARYEFSKEHS 298 >gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae] Length = 547 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 107/512 (20%), Positives = 187/512 (36%), Gaps = 41/512 (8%) Query: 10 HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W + LR+ DN AL A + +I +FI E + + F+ SL Sbjct: 6 NVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65 Query: 68 VQKSLSQ-KG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + K L +G + R+ K+ + + E RRD + Sbjct: 66 IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183 I S L + T ++ R + P Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDWDGV 185 Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------ 234 + F+ +P ++P + +++ ++++R Sbjct: 186 EFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEER 245 Query: 235 ------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PKS 276 + ++ +S +L G LS R+ + + + F + I+ + Sbjct: 246 AFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQRVHMA 305 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 G +LIWRE++ + P + + LQ+W+ G TGFP+I Sbjct: 306 GGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQLQSWRSGQTGFPLI 365 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DAAMRQL GW+H+ LR A+FL + W G +F+ LLD D + G W W Sbjct: 366 DAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWMWV 425 Query: 396 ASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 +S+ + + + P KR DP+G +IR ++PEL NVP +YIH P Sbjct: 426 SSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIHEPWRMPQELQENC 485 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + + YP IVD + ++ Sbjct: 486 ECVIGVQYPERIVDLANVSKRNVXAMQTLRQS 517 >gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor Length = 569 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 25/456 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+ Sbjct: 85 VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 143 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E L S +F +++ EV ++L Sbjct: 144 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 199 Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L+ + + S + + + VYT FRK++ +P+ Sbjct: 200 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 259 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233 ++P P + M +G ++A K Y E Sbjct: 260 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 319 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R Sbjct: 320 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 377 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + P + +W++D L ++W+ TG+P+IDA M++L+T G+M NR Sbjct: 378 FLSIKCGNSLFH-LGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 436 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A GND R F+ Sbjct: 437 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIP 495 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 Q + +DP+G ++ WL +L +P + H P + Sbjct: 496 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 531 >gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium HTCC2150] Length = 476 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 212/471 (45%), Gaps = 22/471 (4%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 +LR++D++ L AA S VI VFIA + + A L + L + Sbjct: 21 RNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFA---LGAAPKWRFGLGLAAFSEQLEKI 76 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-K 134 G + D L + + + + R Y+ + + RD ++ L I + Sbjct: 77 GSKLLLRR----GDVQSVLLDLIHETQACAVLWERSYDPSSINRDTAIKMALGEEGIVAQ 132 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLTGPVTP 190 SF ++L+ P I YKV+TPF + L Q ++ ++ + Sbjct: 133 SFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAPPASTVSNLVSPTDWPKGEDIKD 192 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + + + +GE+ A+ KF + Y ++RD PAI TS+LS L+ Sbjct: 193 WQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPAIDATSKLSENLA 252 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR W+ ++ + ++ +L WR+F HL P + Sbjct: 253 YGEISPRLIWHLAQK----VAHIDDVNVVPFIRQLAWRDFAWHLTYHTPHILDANW-KAG 307 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + W + AW++G TG ++DAAMR+L G MHNR RMI AS+L K L+VDWR Sbjct: 308 WDTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMIAASYLTKHLMVDWR 367 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +G+E+F L+D DLA+N GWQW A TG D+ PYFR+FNP Q ++FD + + W Sbjct: 368 VGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAEKFDKERKYRDFW-- 425 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQ 480 LN V + ++ LN+ P P++ L Y + KK Sbjct: 426 -LNPVQDGARQFAKAAPKSWNIDLNHRPKPLISLADGRARALTAYSSLKKS 475 >gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus] gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus] gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus] Length = 585 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 118/497 (23%), Positives = 194/497 (39%), Gaps = 42/497 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY----ASL 65 + W R LR+ DN AL AA + V V+I P + + + SL Sbjct: 21 SVHWFRKGLRLHDNPALLAAVRGAH-CVRCVYILDPWFAASSSVGINRWRMMKNEATQSL 79 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 L + + Q+ + ++ L + F + R +++ Sbjct: 80 L--------RVLTLQWRKLASGGQ----LPCHMEWGVTRLTFEYDSEPFGKERDTAIMKM 127 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + V + + L I+ Q + +A+I + V + ++ Sbjct: 128 AKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQME 187 Query: 186 GPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQR 234 G Y +++ ++ GE AL L K + K + +R Sbjct: 188 GCRAEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYER 247 Query: 235 DIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + LSPYL G LS R + RL + + + S +L+WREF Sbjct: 248 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREF 306 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + P + P +I W+++ L W +G TGFP IDA M QL GW+H Sbjct: 307 FYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIH 365 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL V W G F LLD D + N G W W + + +F + Sbjct: 366 HLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCY 424 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463 P G+R DP G +IR +LP+L P++YI+ P + + K + ++YP PIV+H Sbjct: 425 CPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNH 484 Query: 464 KKACHHTLNQYYAAKKQ 480 +A + + +Q Sbjct: 485 AEASRLNIERMKQVYQQ 501 >gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni] gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni] Length = 543 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 108/514 (21%), Positives = 182/514 (35%), Gaps = 48/514 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++W R+ LR+ DN AL +A + D +I +FI E + + F+ SL Sbjct: 9 NVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRFLLDSLQD 68 Query: 68 VQ----KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + ++ +G Q E Q ++ K+ + + E +RD + Sbjct: 69 LDGKVQQATEGRG-RLHIFQ----GQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDASV 123 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + Q I S L + T ++ R P Sbjct: 124 KSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVEIIGLPPRPTNDPNWN 183 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---------------VY 228 G V S + Q + V Sbjct: 184 NVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALLLLQERLKVE 243 Query: 229 YYVEQRDIPAI--------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------P 274 +R +SP+L G LS R+ + + + F ++ ++ Sbjct: 244 QSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQLQACVRGVQ 303 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 +G +LIWRE++ + + L+ W+ G TGFP Sbjct: 304 MTGGSHITGQLIWREYFYTMSVNNSNYDRMDGNEICLNIPWSKPHEEKLERWRLGQTGFP 363 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 +ID AMRQL GW+H+ LR A+FL + L W G ++F+ LLD D + G W Sbjct: 364 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKYLLDADWSVCAGNWM 423 Query: 394 WAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451 W +S+ + + + KR DP G +I+ ++PEL NVP +YIH P ++ Sbjct: 424 WVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELRNVPKEYIHEPWRMSAEDQE 483 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP PI+D A + Sbjct: 484 RYECLIGVHYPEPIIDLSLALKRNTLAMTNLRNS 517 >gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60] Length = 515 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 172/512 (33%), Positives = 246/512 (48%), Gaps = 44/512 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASL 65 ++L+W R DLR DN A A C ++ VIAV TP+QW+ H S Q I + Sbjct: 1 MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SLSQ I +F + C Q ++ LF N +Y +NEV RD+ + + Sbjct: 61 RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120 Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL 177 + Q I + FDDS ++ P I+ YKV+TPF K + L + Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-------------------------PIGE 212 + + ID + P GE Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEE-F 267 A L F K+ + Y RD+PA+ TS+LSPYL+IG+LSPR C+ +++ Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAW 326 + + W++EL WR+FY +M P + GK F P E + W D ++W Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM L+DGD A Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SNNGGWQW+AS G D+ PYFR+ NP Q DP ++I+HW+PEL VP I+ Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIINDEQKL 480 Query: 447 LDKNDLSLNYPLPIVD--HKKACHHTLNQYYA 476 + P +D K + + + Sbjct: 481 QTYLTQHPHIAYPTLDTPTKASRAMAIEAFKK 512 >gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus] Length = 539 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 103/505 (20%), Positives = 178/505 (35%), Gaps = 39/505 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V + R+ LR+ DN AL A + DA + +FI E + + F+ SL Sbjct: 10 KVAVHRFRHGLRLHDNPALLDAVKDCDA-FLPIFIFDGESAGTKLVGYNRMKFLLESLQD 68 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + G + + + KL + + E RD L++K Sbjct: 69 IDSQLKKYGGNLYLFHGT----PLCVFQYISQTIGLHKLCFEQDCEPIWQHRDDLVKKFC 124 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I C L P ++ + + + + V + Sbjct: 125 KENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIGPPPRPVEDVEWSVVNF 184 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------- 239 V P + F+ G + + + + + R + Sbjct: 185 GVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERLKVEENA 244 Query: 240 ----------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + S L G LS R+ + +++ + I S + + Sbjct: 245 FREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMY--SSICGPSPNQNITS 302 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +LIWRE++ + N WK+G TG+P IDA MRQL Sbjct: 303 QLIWREYFYTMSVGNEYYAEMDRNPICLNIPWKNDYGSDFNKWKEGKTGYPFIDAIMRQL 362 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL + W G +F+ LLD D + G W W +S+ + Sbjct: 363 IQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGNWMWVSSSAFEQ 422 Query: 403 V-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455 + P G+R DP G +I+ ++PEL N P +Y++ P + + Sbjct: 423 LLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAPLHVQETAGCIVGKD 482 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP I+DH+ A + + + Sbjct: 483 YPERIIDHQIASEKNRSYMDEIRNR 507 >gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC 43049] Length = 534 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 111/476 (23%), Positives = 174/476 (36%), Gaps = 33/476 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R LRI D A+ A + V+ +F+ P + G++ + F++ L + Sbjct: 29 VVWHREHLRIRDQGAVARAAAS--EYVLPLFVFDPAFYGADGLACDSRIRFLHDCLADLS 86 Query: 70 KSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 G Y D ++ L + + Sbjct: 87 DQYHTATGCGLTYAH----GDPVDVLGRFREA-----------GWDIVTMAAPTGRYGRE 131 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + D + ++ + A Q D V + + Sbjct: 132 RDRRVREQCDVTFVDGDGLVRDRAATRDGWQDDVSAWFAA-DQHDWDPSTVTSRSFDSGI 190 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S I +D D + + Y + A GTS LSPY Sbjct: 191 DISTIEDHYDIAPSKSDVPRGGTGPARERLSAFAERIDDYPGNISAPVDARDGTSGLSPY 250 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ G LS RQ + E D G +++ L W + Y + +P Sbjct: 251 LAFGCLSVRQVIQYIDEHAPDGR-----GKEMFVSRLFWNKHYEQKLEDWPGWLETAVNP 305 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 D L+ AWK G TGFP++DA+MR L GW++ R+R ++AS L Sbjct: 306 VLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMRSMSASVYYHLLQQP 365 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WRIG ++F L+D A N QW + G P R++NP Q + DP G FIR W Sbjct: 366 WRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFIRQW 423 Query: 429 LPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 +PEL ++P +Y+ P D+ +YP P+VD+ A +Y A + Sbjct: 424 VPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQAFHRRYEAVR 479 >gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata] Length = 588 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 103/445 (23%), Positives = 171/445 (38%), Gaps = 30/445 (6%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + + + KL E Sbjct: 21 RFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGKE 76 Query: 119 RDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD ++K + S I+ + + LI + ++ Sbjct: 77 RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 136 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEK 226 + + TP + Y +++ ++P GE AL L + + K Sbjct: 137 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 196 Query: 227 VYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + LSPYL G LS R + +L + + + S Sbjct: 197 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLY 255 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Q Sbjct: 256 GQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 314 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 315 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF 374 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +N Sbjct: 375 -QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVN 433 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+V+H +A + + +Q Sbjct: 434 YPKPMVNHAEASRLNIERMKQIYQQ 458 >gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii] Length = 475 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 108/477 (22%), Positives = 186/477 (38%), Gaps = 32/477 (6%) Query: 28 AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 A + +D V V+I P + + F+ SL + SL + + Sbjct: 1 EALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVR---- 55 Query: 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGS 146 + + VT+L + E RD + K Q + ++ P Sbjct: 56 GQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDR 115 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID- 205 I+ + +A++ L + ++ T + Y +++ Sbjct: 116 IIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEE 175 Query: 206 ----------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-----TSQLSPYLS 250 ++ GE A+ L K K + +R + LSPYL Sbjct: 176 LGFKTQRDSSHVWKGGETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLSPYLR 235 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LS R + L+E F+ L + S +L+WREF+ P+ + P Sbjct: 236 FGCLSCRVFYYNLRELFMKLRRRSSPPL-SLFGQLLWREFFYTAGTNNPNFDRME-GNPI 293 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369 +I W+ + L W +G TGFP IDA M QL GW+H+ R A FL + DL + W Sbjct: 294 CVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 353 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + F LLD D + N G W W + + +F + P G+R DP G +IR ++ Sbjct: 354 ESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYI 412 Query: 430 PELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P+L + P YI+ P + + + ++YP P+++H ++ + + +Q Sbjct: 413 PKLKDYPNCYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQVYQQ 469 >gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua] gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua] Length = 548 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 101/504 (20%), Positives = 178/504 (35%), Gaps = 37/504 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 SQFKKHGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+CK L P +++ + + + + V + Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + F + P I ++Q Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLETEDIRMIRWVGGETTALKQMQQRLTVEYETFLRG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNE 284 + + LSP L G LS R + +++ F + + + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWRE++ + P+ + LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKTPSGDELQRWMEGRTGFPFVDAAMRQLR 360 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 + P G+R DP G ++R ++PEL +P +YI+ P + +Y Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERASCIIGKDY 480 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480 P P+V+H A N + Sbjct: 481 PDPVVNHLVAAQRNRNAMKWLSRS 504 >gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911] Length = 474 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 110/474 (23%), Positives = 185/474 (39%), Gaps = 27/474 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +++VW R DLRI D++ L AC +++ +VI ++IA P + +S R F L Q+ Sbjct: 1 MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEP-LSGRKEVSRRHIQFAAEGLEQL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L G + I+ L+ + LF++ +Y+ + RL Sbjct: 59 DEGLRGLGGRLF----AAQGTIIDILEELLKRYGDFSLFFHLEYDTDT--------DRLA 106 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + P L + +++++++ L + + Sbjct: 107 AEWMGSKGLPFYPFHPPGQLEKPKSKSRFRKLWQESMLEELTDPPAAVRVPEKVPDFLNL 166 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQLS 246 + +AI GE+ + L F E+ Y Q+ + + +S+LS Sbjct: 167 SVQKALGMKVKG-EAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPLASSFSSSRLS 225 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL+ G +SPR ++ ++ + K + ++L+ R Sbjct: 226 PYLAYGNISPRLAYHEAAKKAENCTETEKQQLSLFQSKLLERSEALQWQEKETQA----- 280 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 D+ LL+ W+ G TG P +DA+MR L GW++ R + A F LL Sbjct: 281 -NAADSNSARAHDAELLEKWRTGNTGIPSVDASMRCLRKTGWLNYSSRRMLAGFACNILL 339 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW LD + A + A G +I +P GK D G+FIR Sbjct: 340 LDWEKAALELALLFLDHEPAVHMKEMGILA--GKSGSKTVKIIDPVKWGKELDTDGSFIR 397 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++PEL +V YIH P + L YP PI D +KA Q KK Sbjct: 398 RYVPELKDVDAAYIHEPWLYPGFFQLG--YPAPICDVRKAIKQAKRQIEDQKKD 449 >gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 568 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 126/545 (23%), Positives = 207/545 (37%), Gaps = 85/545 (15%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFI 61 M V L+W R DLR+ DN AL AA + SD ++I+++I + + A + F+ Sbjct: 1 MKV-LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYII--HRPQIMRCGANRFQFV 57 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ + +L+++G + DSI+ L +T +F++ E V RD Sbjct: 58 LESVADLSGALAERGSKLVVAK----GDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDD 113 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L ++ H+ + K Y F KA+ + P Sbjct: 114 RALALAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQPTPREPIPTPE 173 Query: 180 PAI---------------------------------------RLTGPVTPSNIPRFFDYP 200 ++ GP +P + Sbjct: 174 TLPSPTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYFG 233 Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--------IPAIQGTSQLSPYLSIG 252 ++ + I + V + IP T+ LSPY+ G Sbjct: 234 YETPEKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYG 293 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK----PFI 308 LSPR +++++ K S + +L+WR+FY P + Sbjct: 294 CLSPRTFYHQVR-SIQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCLQ 352 Query: 309 PWTEKIEWNKDSH-----------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 ++ +AW+ G TGFP IDA M QL GWMH+ R Sbjct: 353 VNWRYHTIPENEEDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSV 412 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL + W G E F +L+D D + N G W W +S+ + YFR+++P GK Sbjct: 413 ACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISFGK 471 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 + DP+G FI+ ++P L N P +YI+ P + +YP PI++HK A Sbjct: 472 KSDPEGLFIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCRIGKDYPTPIIEHKTAMKRC 531 Query: 471 LNQYY 475 + Sbjct: 532 VEGLK 536 >gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens BL2] Length = 494 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 134/501 (26%), Positives = 195/501 (38%), Gaps = 60/501 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYASLLQ 67 LVW R+DLR++D+ AL AA +D +VIAV+I + + + SL Sbjct: 10 LVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRWWAHESLAI 67 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + LS GI + ++ + V + ++R+Y D ++ L Sbjct: 68 LHQELSDLGIPLLF----AAGEAAAIIPQLTGSLGVGAVRWSRRYAPASRALDSQIKTVL 123 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAI 182 + + S S+L+ P + YKV+TPF KA+ V P+ Sbjct: 124 HEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREVGDVLPTPEPQSPIDRS 183 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--- 239 + + + ++ R Sbjct: 184 LVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQDTIACHWLPGTRAAADQLDD 243 Query: 240 ------------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 TS+LSP L G LSPRQ + + +W Sbjct: 244 LAVGIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQLLHAAQ----TTRSVTPDDRAAW 299 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + +L WREF HL YP P + D L W+ G TG+P+IDA M Sbjct: 300 VRQLYWREFSWHLTYHYPD-IDYTPIRREFRNFPYEDDDEALAHWRSGATGYPLIDAGMA 358 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 QL GWMHNR+RM+TASFL K+LL W GE++F L+D D A+N WQW A +G D Sbjct: 359 QLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEANNPVSWQWVAGSGAD 418 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 + PYFR+FNP Q +RFDP G ++ WLP + IV Sbjct: 419 AAPYFRVFNPERQRERFDPDGAYVDDWLP-------------YPPAAAPAP-------IV 458 Query: 462 DHKKACHHTLNQYYAAKKQSL 482 D + L+ Y K S Sbjct: 459 DLADSRQAALSAYDRMKNMSA 479 >gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis] Length = 1184 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 117/516 (22%), Positives = 186/516 (36%), Gaps = 74/516 (14%) Query: 10 HLVWLR-NDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSH 59 ++W R DLR+ DN ++ A +A +V+ +F P W ++ Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN---- 115 F+ S+ ++ L G E L Q+ Sbjct: 77 FLLESVRDLKARLRALGSDLLI----CMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEE 132 Query: 116 --EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 ++ K ++ L M V+TPF++ Sbjct: 133 LAIEKKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRK 192 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------------------- 214 P P + F + ++ + P G Sbjct: 193 PFPAPAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTRAVLDFEGGES 252 Query: 215 ---ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 A F V Y + R+ + +++L+P+L+ G LSPR + +K Sbjct: 253 AALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRYERQT 312 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 K + + ELIWR+FYR + S + + +W+ D+ L+ WK+G Sbjct: 313 GTANK-STYWVVFELIWRDFYRFFALKHGSKIFLEGGT-TGQAPQWSNDAEALRRWKEGR 370 Query: 331 TGFPIIDAAMRQLNT--------------------IGWMHNRLRMITASFLVKDLLVDWR 370 TG+P++DA R+L G+M NR R ASFL DL VDWR Sbjct: 371 TGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFLALDLGVDWR 430 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G ++F LLD D+ SN G W A+ G FN T Q K +D +G +IR W+P Sbjct: 431 RGADWFEHLLLDYDVCSNWGNW--VAAAGLTG-GRVNKFNITKQSKDYDSEGQYIRTWVP 487 Query: 431 ELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 EL VP + IH P + + ++YP P+ Sbjct: 488 ELACVPARRIHEPWLMSREEQAAAGVQIGVDYPAPL 523 >gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii] Length = 564 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 103/452 (22%), Positives = 179/452 (39%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + + F+ L + SL + + + + ++T+L Y Sbjct: 3 NVGINRWRFLLQCLEDLDASLRKLNSRLFVIR----GQPTDVFPRLFKEWKITRLSYEYD 58 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLV 170 E RD ++K + S I+ + + LI + Sbjct: 59 SEPFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMD 118 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219 ++ + + A + TP + + +++ ++P GE AL L Sbjct: 119 PVEIPAETITAEVMGKCATPVSDDHDDKFGVPSLEELGFETDGLSSAVWPGGETEALTRL 178 Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + + K + +R + LSPYL G LS R + +L + + + Sbjct: 179 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSL 238 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P + F P +I W+++ L W +G TGFP Sbjct: 239 PPL-SLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGRTGFPW 296 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 297 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW 356 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP L P ++I+ P + + Sbjct: 357 LSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVA 415 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP P+V+H +A + + +Q Sbjct: 416 KCIIGVHYPKPMVNHAEASRINIERMKQIYQQ 447 >gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1] Length = 458 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 130/448 (29%), Positives = 208/448 (46%), Gaps = 28/448 (6%) Query: 34 DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + VI V++ + RQ + +++ SL + SL +KG Q DS+E Sbjct: 27 EGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDASLREKGSRLILRQ----GDSVEQ 82 Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L + + ++ YE +K + KRL + D +LLPPG + Sbjct: 83 LVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRLDLCL----HDGGLLLPPGVVRTGGGS 138 Query: 154 MYKVYTPFRKALIQNLVQA-----DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 Y++YTPF +A+++ + A R + + + A + Sbjct: 139 SYRIYTPFARAVMEQMPPATPVRAPSRIDAPSDWPKSDSLADWGLLPVKPDWAVAFSSDW 198 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 GE A + F E Y V R++P+ +GTS+LSP+L G +SP W+R+ Sbjct: 199 TPGEAGARTNVAAFLDEAADYDV-ARNLPSQEGTSRLSPHLHFGEVSPAYVWHRI----- 252 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW--TEKIEWNKDSHLLQAW 326 + A ++L ELIWR++ + P+ + + + +AW Sbjct: 253 ---VGTGDDATTFLKELIWRDYAHTQIWAMPTYGSENARPAFDAMPWRDLREAGEDFKAW 309 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+PI+DA MRQL GWMHNR+RMI ASFL+K LL+DWR G +F L+D A Sbjct: 310 QSGRTGYPIVDAGMRQLWATGWMHNRVRMIAASFLIKHLLIDWRHGARWFWDTLVDASYA 369 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 +N+ WQW A +G D+ + RI P Q ++FD G +IR W+PEL ++ ++IH P Sbjct: 370 NNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFDAAG-YIRTWVPELAHLDDEHIHDP--- 425 Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +YP + H++ L + Sbjct: 426 DAHGIRPPDYPAKRIGHREGRERALAAW 453 >gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 463 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 129/478 (26%), Positives = 210/478 (43%), Gaps = 28/478 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W R D R+ DN L AA V+ V++ + + I RQ F ++ ++ Sbjct: 1 MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLFGA--IGERQQAFWMHAVREL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ ++ D + + + + + + N+ Y R + + L Sbjct: 59 KEAYRERESDLIVR----AGDPGDIIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I +L L+ + + + + + + A Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDASYPNHSQFHNDWEDVPKR-----------SAYDSPPAE 163 Query: 189 TPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI------PAIQG 241 T +I P ++ P G + A L +FC +Y Y + RD Sbjct: 164 TLVDITDSKTVPVPTVEIDLPPSGYEAARDRLDRFCDRGIYDYNDTRDDLAQAAEKPTTA 223 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S++SPYLS G++ R+ W+ + + + A + EL WRE HL+ + P + Sbjct: 224 VSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQNYHLLYYNPDL 283 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + +I+W D ++W G TG+P++DA MRQLN G++HNR R + ASFL Sbjct: 284 AVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIHNRPRQVVASFL 342 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K LLVDWR G YF QL+D D ASN+G WQW ASTG DSV RIF+P Q ++D Sbjct: 343 TKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSVD-VRIFDPVSQLSKYDDG 401 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 F+R ++PEL++ PT+ I + D+ + YP PIV + + A Sbjct: 402 ANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEGYERAQQTFEKA 459 >gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 225/475 (47%), Gaps = 24/475 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+WLR D R++D+ L AA S V+A+FI P A + +L Sbjct: 8 LLWLRRDFRLSDHPMLSAAA-ASGRPVLALFILDPL---AEAYGAAPKWRLEQALAAFAP 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129 +L+ G+ + ++ L + ++++R + + RD ++ L+ Sbjct: 64 ALAACGVPLVLRRGP----ALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAE 119 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADLRSLPVPAIRLTG 186 + +SFD +L P ++ Y+VYTP+ +A+ A + +L + Sbjct: 120 GLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPLAPVTALRPGPVLRGE 179 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + R + +GE A L +F +E + Y +RD A TS+LS Sbjct: 180 SLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATSELS 239 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L+ G +SPR W+ + + GA ++L EL+WREF HLM +YP + Sbjct: 240 EHLAWGEISPRVIWHAGAQAMAEGRA----GAETFLKELVWREFAWHLMFYYPRLATENW 295 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 P + W +S + W++G TG PI+DAAMR++ G MHNR RMI AS+L K LL Sbjct: 296 -RPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTKHLL 354 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 DWRIG +F L+D D A+N GWQW A G D+ PYFRIFNP Q ++FDP+G + R Sbjct: 355 TDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGRYRR 414 Query: 427 HWLPEL-NNVP----TQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 WL E + P + P SW +L+ P++D L Y A Sbjct: 415 AWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALS--APLIDLAAGRDRALAAYAA 467 >gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group] gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group] Length = 582 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 77 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 135 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ + L S ++ +++ Sbjct: 136 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 191 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E+ + L+ K L+ VI + + P L + + NL D Sbjct: 192 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 249 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217 + + A+ V + P G Sbjct: 250 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 309 Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 310 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 369 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + L ELIWR+++R + A Y + P + +W++D L + Sbjct: 370 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 426 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 +W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D Sbjct: 427 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 486 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + Sbjct: 487 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE------ 539 Query: 445 SWLDKNDLSLNYPLPIVDHK 464 +N +Y +V K Sbjct: 540 ---RRNFPGASYIKQVVPLK 556 >gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM] Length = 473 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 207/472 (43%), Gaps = 30/472 (6%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80 +D+ AL AA VI V I + HG+ A + + + ++L++KG Sbjct: 16 SDHPALRAAVARG-GPVIPVMIRDD---QMHGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDS 139 + E L + + +++ R Y+ + RD+ +++ L + +S Sbjct: 72 LRS----GQAAEVLSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHAGH 127 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLTGPVTPSNIPR 195 +L P + YKVYTP+ A+ + A + + + Sbjct: 128 LLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTAPAEITAPAHWPESEDLDDWALGA 187 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 P +GE A L F + + Y +RD+P GTS LS LS+G +S Sbjct: 188 AMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENLSLGEIS 247 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-I 314 RQCW+ + GA +W EL+WREF HL+ P + G W Sbjct: 248 IRQCWHAAMRARQEGAA----GAETWAKELVWREFAYHLIYHTPRLASGNWREEWDGFPW 303 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 DS + AWKQG TG +DAAMR++ G MHNR RM+ AS+L K LL WR+G+ Sbjct: 304 REAGDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHWRVGQR 363 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 +F L D D+ASN GWQW A +G D+ P+FR+FNP Q ++FD G + R W+ E + Sbjct: 364 WFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKGGAYRRAWIAEGQD 423 Query: 435 VPT-------QYIHAPHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478 P + I + YP PIV K+ L Y A K Sbjct: 424 APPDTALAYFEAIPQSWNLSASRR----YPDSPIVGLKEGRQAALAAYEARK 471 >gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera] Length = 548 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 101/499 (20%), Positives = 180/499 (36%), Gaps = 37/499 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKLVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 SQFKKFGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+C+ L P +++ + + + + + + Sbjct: 121 IGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + F + P I ++Q Sbjct: 181 LPECFYQEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLSVEYETFLRG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI---KPKSGAFSWLNE 284 + + LSP L G LS R + +++ F + S + + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWRE++ + P+ + N + LQ W +G TGFP +DAAMRQL Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLR 360 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402 T GW+H+ R ASFL + L + W G +F+ LLD D + G W W +S+ ++ Sbjct: 361 TEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEAL 420 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 + P G+R DP G ++R ++PEL +P +YI+ P + +Y Sbjct: 421 LDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKDY 480 Query: 457 PLPIVDHKKACHHTLNQYY 475 P P+V+H A N Sbjct: 481 PAPVVNHLVAAQRNKNAMK 499 >gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301] Length = 539 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 98/462 (21%), Positives = 165/462 (35%), Gaps = 17/462 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW + DLR+ D+ ++ V+ + I PE WR +S RQ F+ + + Sbjct: 5 VSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDVSHRQYAFLAGCIEDL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ G +IE L++ + L+ + + +R Sbjct: 63 AAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTHARDRAVRR-- 116 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + L G I AL + + + + + Sbjct: 117 -WARAQGVAWTELRQFGVIRGPALDRDRWAAHWDRMMAAPWLPQPRGIAWAALPEGLAAG 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSP 247 P P + Y + + S+LSP Sbjct: 176 GVPAAAALGIAPDGLRHGQAPGRAAALETLGSFLASRGEDYTRAMSSPVSGEAACSRLSP 235 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGK 305 YL+ G +S R+ ++ + GA S++ L W + + P + Sbjct: 236 YLAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE-AEWR 294 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 PF E + D L AW +G TG+P IDAAMR L GW++ R+R + SF DL Sbjct: 295 PFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDL 354 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ D + + Q +G + R+++P QG DP G FI Sbjct: 355 FLPWQESGLVLARLFTDYEPGIHWP--QCQMQSGETGINTVRVYSPVKQGFDQDPAGRFI 412 Query: 426 RHWLPELNNVPTQYIHAPHS--WLDKNDLSLNYPLPIVDHKK 465 R +PEL V +H P ++ L YP IV H++ Sbjct: 413 RLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 454 >gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str. F0314] Length = 473 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 137/464 (29%), Positives = 205/464 (44%), Gaps = 35/464 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M+ T LVW R +LR+TDN AL AA V VF + RQ+ F Sbjct: 30 MQKNT-----LVWFRRNLRLTDNAALAAAVRRG-LPVAGVF-------AADAANPRQAAF 76 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + AS ++ ++L+++GI Q ++ + + + + +E RD Sbjct: 77 LRASAAELHRALAERGIPLFVAQ-----EAETDIPRLAAELDAAVVVADEGCMADETARD 131 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L + + +D I++ + Y + P+R+A ++ Q P Sbjct: 132 NRIWRVLDAQGRAFERVNDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPS 191 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ + +P F P A G + A + Y PA Sbjct: 192 ESLPVGFQTAFGILPPFPALPETAPQEWRQQGGEAAGRRQWARFAADIGNYPLMSGFPAK 251 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +GT ++ YL+ G LSPR+ K GA WL+ L+ R+F+R +M P Sbjct: 252 KGTGRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDFFRQVMFHRP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P I+W +L W+QG TGFP+IDAAMR LN GW+H LR A+ Sbjct: 302 EAA-AEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLHPALRAAAAA 360 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-GNDSVPYFRIFNPTIQGKRF 418 FL + LL DWR G +F L D D ASN G WQ AA G S NP +Q ++ Sbjct: 361 FLCRILLADWRHGAAWFARCLTDYDPASNTGNWQEAAGVFGLFSGGAA---NPVLQAQQL 417 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 DP GTFIR ++PEL ++P +HAP D + YP P+ D Sbjct: 418 DPDGTFIRRYVPELAHLPKDVVHAPWLARASVD-THGYPPPMAD 460 >gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group] gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group] Length = 547 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ + L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 156 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E+ + L+ K L+ VI + + P L + + NL D Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217 + + A+ V + P G Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274 Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + L ELIWR+++R + A Y + P + +W++D L + Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 +W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509 Query: 445 SWLDKNDLSLNYPLPIVDHK 464 +Y +V K Sbjct: 510 --------GASYIKQVVPLK 521 >gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group] Length = 547 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 122/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V+ V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ + L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHQETC 156 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E+ + L+ K L+ VI + + P L + + NL D Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217 + + A+ V + P G Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274 Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + K+++ Y + R+ + +++ SP+L+ G LSPR +K Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + L ELIWR+++R + A Y + P + +W++D L + Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 +W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509 Query: 445 SWLDKNDLSLNYPLPIVDHK 464 +Y +V K Sbjct: 510 --------GASYIKQVVPLK 521 >gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299] gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299] Length = 488 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 114/495 (23%), Positives = 183/495 (36%), Gaps = 55/495 (11%) Query: 11 LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 +VW RNDLR+ DN A+ A + V+ +++ P W + F Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+L ++++L G E + Y L K E+ + K Sbjct: 63 LESVLNLKRNLRAIGSDLLV----AVGKPEEVIPKYLLDAPGAKNEEVCSEELRVDAKVK 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 K + S L + + +P PA Sbjct: 119 SAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVPPPA 178 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNA---------LHILR 220 + F+ + P G Sbjct: 179 KGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAALARVRYY 238 Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + EK+ Y E R+ + +S+L+P+L+ G +SPRQ +++ + + Sbjct: 239 VWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRK--FESQRVENKSTY 296 Query: 280 SWLNELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWKQGY 330 + ELIWR+F++ + + W D L AWK+G Sbjct: 297 WLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDDPAALAAWKEGK 356 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P++DA MR+L G+M NR R AS+L D VDWR+G E+F ++LLD D ++N G Sbjct: 357 TGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENKLLDYDCSANWG 416 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--- 447 W A+ G FN Q K +DP+G +I++W+PEL VP +YI P Sbjct: 417 NW--VAAAGMTG-GRVNKFNIAKQTKDYDPEGEYIKYWVPELRKVPAKYIAEPRQMPGDV 473 Query: 448 ---DKNDLSLNYPLP 459 + ++YP P Sbjct: 474 AQSAGCVIGVDYPAP 488 >gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13] Length = 477 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 89/478 (18%), Positives = 167/478 (34%), Gaps = 27/478 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +++VWL+ DLR+ D++ LY A + I ++I P R FI SL Sbjct: 4 KINIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLED 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q L++ + +S++ + + + +F + + +N Sbjct: 63 IQLELAKNQNKLSI----AYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANF 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 R + + + +R + Sbjct: 119 FKRQNITWIESQSNGV-------------IRGLQDRKTWDKAWARFMRDKTIKINPQKLN 165 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--L 245 + + F+ G A L F + Y + P +S + Sbjct: 166 IIDIDFGEINIPSFEEDSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSCSRM 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S Y++ G +S RQ + ++ E + + + + + + W + + Sbjct: 226 SAYIAYGNISIRQIYQKILENWNRVG--WRRSMAALSSRIHWHCHFIQKFESECRIENET 283 Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + +D +W G TGFP+IDA+MR L G+++ R R + SF Sbjct: 284 INKGYQNFPYLVEDEEHADFTSWLNGMTGFPLIDASMRALRYSGYINFRSRAMVVSFACH 343 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 L + W++ + LD + + Q A G + RI+NP Q DP+ Sbjct: 344 YLRIHWKLVAKALARLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPKKQAMDHDPEAI 401 Query: 424 FIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 FI+ W+PELN+ +YI P D NYP + ++ + + + KK Sbjct: 402 FIKTWIPELNSHQPEYIINLPLQSNDLFSNESNYPQAQYNFQERIRESKDLLWQWKKS 459 >gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium nitrogenifigens DSM 19370] Length = 455 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 126/454 (27%), Positives = 196/454 (43%), Gaps = 24/454 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVWLR DLR+ ++ V+ V++ E R + +++ SL + + Sbjct: 6 LVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDE 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L Q+G + + L + ++ E ++ + K L Sbjct: 64 GLRQRGSRLILRRGPAHRE----LAELAREVGARRVHALAHVEPWWRNAERAVAKTLDLV 119 Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + GS L + + + V A R + + Sbjct: 120 LHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTHRPVPAPGRIDAPASWPDGDRLD 179 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 + + GE A L F + Y E R+ P+++GTS+LSP+L Sbjct: 180 DWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFIGKASRYG-EWRNFPSVEGTSRLSPHL 238 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +S W+ + + ++L E+ WR++ +++ P G+ Sbjct: 239 HFGEISAATVWHSVADAGG--------SVSTFLGEVGWRDYAANVLLQMPDYA-GRSARE 289 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E+ W +D+ L+AW+ G TG+PI+DA MR+L GWMHNR+RMI ASFLVK LL+DW Sbjct: 290 AFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAASFLVKHLLIDW 349 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 R GE +F L+D D A N WQW A TG DS + RI P Q +FD G +IR W+ Sbjct: 350 REGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG-YIRRWV 408 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PEL++V IH P YP P++DH Sbjct: 409 PELSDVADADIHDP------RIRPRGYPAPLIDH 436 >gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10] Length = 479 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 216/474 (45%), Gaps = 24/474 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+R DLR+ +N A A + A VI VFI + A + L + K Sbjct: 12 LWWVRRDLRLAENPA-LDAAVAAGAPVIPVFIFDTL---DEDLGAAPRFRLGLGLAHLAK 67 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++G + + E L + + + R Y+ + RD ++K+L+ + Sbjct: 68 GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123 Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I KSF +L P ++ MY+VY+P+ K++ L+ A R + Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAQWPAS 183 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L +F +V Y + RD PA+ TS L Sbjct: 184 DDLDSWQLAAGMRRGADVVAQYCRVGEDAAQARLAEFLDTRVADYKQDRDFPAVDATSGL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G +SPR+ W+ E GA +L E++WREF HLM P + Sbjct: 244 SENLAWGEISPRRMWHHGLEARRAGKS----GAEHFLKEIVWREFAYHLMFHTPHILTRN 299 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 W +D + AW++G TG+ +DAAMR+L G MHNR RMI ASFL K + Sbjct: 300 WRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 L WRIG+++F L+D D ASN GWQW A +G D+ P+FRIFNP Q ++FDP+G + Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419 Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 W+ E P Q Y P SW P VD K+ L Y Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRA--SPFVDLKEGRARALEAY 471 >gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180 str. F0310] Length = 475 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 135/498 (27%), Positives = 209/498 (41%), Gaps = 53/498 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-------TPEQWRQHGISARQSH 59 M+ L+WLR+DLR+ D+ AL AAC + V+A++I + + A Sbjct: 1 MTT-LIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRW 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 + + SL Q+ L+ GI + + D+ + + T + + R+Y R Sbjct: 60 WYHRSLQQLAPRLADLGIPLIFAR----GDAARIMRRVVDTLQPTFVHWTRRYAPAACRL 115 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 D +++ L+ R S S+L P + + Y+V+TPF A+ + L Sbjct: 116 DAAIKQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSP 175 Query: 180 PAIR---------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 L + D+ + + GE A L Sbjct: 176 VDEPDGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDAIDG 235 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y + TS++SP L G LSPRQ + +W + Sbjct: 236 WLPGYAKRRDLPGEETSTSRISPRLRCGELSPRQALAAARSSTAAGEDI-----AAWTRQ 290 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WREF HL+ P P E+ ++ D HL++AW+QG TG ++D M QL Sbjct: 291 LYWREFCWHLLHHR-EHLEDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLW 349 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWMHNR+RM+ AS K++L W+ GE++F L+D D A+N WQW A +G D+ P Sbjct: 350 QTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAP 409 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 YFRIFNP +Q RFDP ++++ W+PE P P+VD Sbjct: 410 YFRIFNPELQRTRFDPHSSYVKRWIPEGLARPVV--------------------PVVDLA 449 Query: 465 KACHHTLNQYYAAKKQSL 482 ++ L Y + S Sbjct: 450 ESRREALAAYEQVRAASA 467 >gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus] Length = 577 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 103/446 (23%), Positives = 172/446 (38%), Gaps = 30/446 (6%) Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ L + +L + + + + + KL E Sbjct: 13 IRFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNIAKLSIEYDSEPFGK 68 Query: 118 RRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD ++K + S I+ + + LI + + Sbjct: 69 ERDAAIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMDPLAMPV 128 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKE 225 + A + +TP + Y +++ ++P GE AL L + + Sbjct: 129 ETITAEVMGKCMTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 188 Query: 226 KVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K + +R + LSPYL G LS R + +L + + + S Sbjct: 189 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SL 247 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ P + P +I W+++ L W +G TGFP IDA M Sbjct: 248 YGQLLWREFFYTAATSNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 306 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 307 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 366 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSL 454 +F + P G+R DP G +IR +LP L P +YI+ P + + K + + Sbjct: 367 F-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGV 425 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQ 480 NYP P+V+H +A + + +Q Sbjct: 426 NYPKPMVNHAEASRLNIERMKQIYQQ 451 >gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 493 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 102/483 (21%), Positives = 164/483 (33%), Gaps = 42/483 (8%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS LVW + DLR+ D+ AL+AA A A+F+ PE A+ F + Sbjct: 1 MSTLALVWFKRDLRVQDHAALHAAAQCDAAL--ALFVMEPEWIASPECDAQHVQFAADCV 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL+Q G+ D + + + R T LF + + Sbjct: 59 AALRESLTQAGLRLLVR----VGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDKRV- 113 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + P ++ ++K + V Sbjct: 114 ---AHWCREQGVIWQEWPQNGVVRRLRDRAGWAARWQKRMDAPQVPVPQGLRDASKPLAA 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G R P P + + Y + A +G S+L Sbjct: 171 GD---FPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSRL 227 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-------WREFYRHLMAFY 298 S +L+ G LS RQ ++ L + A + L W + + Sbjct: 228 SAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFMQKLEDE 287 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + E + +AW G TGFP++DA MR LN GW++ R+R + Sbjct: 288 PGIEFHNFARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAMLV 347 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L + WR + Q LD + + Q +G + R+++P Q Sbjct: 348 SFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQADH 405 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DPQG FIR W+PE YP PIV+ + A ++ YA + Sbjct: 406 DPQGEFIRQWVPE------------WGTSA-------YPPPIVNERSAVKQAKDRIYAIR 446 Query: 479 KQS 481 + Sbjct: 447 QSP 449 >gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi] gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi] Length = 553 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 125/531 (23%), Positives = 222/531 (41%), Gaps = 79/531 (14%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAK--------VIAVFIATPEQWRQHGIS- 54 + L+W RNDLR+ DN++L +++ V+ ++ P + I Sbjct: 5 NNTLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGK 64 Query: 55 -----ARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 A ++ F+ S+ ++K+L ++ G+ E + C Q + ++F Sbjct: 65 FRKANANRTRFLTESVDNLRKNLMNEWGLKLMIQ----IGHPEEIIPHLCSQYEIEQVFA 120 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ- 167 +++ E +++ L+ ++ ++ + + V+T FR+ + Sbjct: 121 DKEVTSEETSIEQV----LEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENP 176 Query: 168 -----------------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 NL+Q + P +++ G + Sbjct: 177 KLIVRPLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLKDPRS 236 Query: 205 DPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWN 261 F GE A + ++++ Y E R+ + +S+LSP+LS+G +SPR+ ++ Sbjct: 237 VLHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYH 296 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG----------------- 304 +K + + + + EL+WR+++R + + Sbjct: 297 EVKRYEKERVEND--STYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGD 354 Query: 305 ---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 ++ W +D L + W G TG P +DA MR+L GWM NR R ASFL Sbjct: 355 SSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVASFL 414 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPYFRIFNPTIQGKRFDP 420 KDL +DWR+G EYF S LLD + SN G W +AA G D R FN QG +D Sbjct: 415 SKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGFDYDF 474 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 G F++ W+PEL+ VP + IHAP+ + K + ++YP +V+ K Sbjct: 475 NGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVKA 525 >gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a] Length = 565 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 239/503 (47%), Gaps = 46/503 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59 S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 75 STVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109 FI +L +Q+SL++ I + SN + +E+ C+ + N Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 194 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166 +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 195 IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLYV 254 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218 N ++ + I + F P + Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKP 274 L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + +K Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKD 374 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG P Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GGW + Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGF 494 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541 Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564 >gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c] gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; Flags: Precursor gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae] gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae] gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789] gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291] gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118] gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c] gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23] Length = 565 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 239/503 (47%), Gaps = 46/503 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59 S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 75 STVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109 FI +L +Q+SL++ I + SN + +E+ C+ + N Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 194 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166 +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 195 IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 254 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218 N ++ + I + F P + Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKP 274 L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + +K Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKD 374 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG P Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DA MR+L G+++NR RMITASFL K+LL+DWR GE +FM L+DGD +SN GGW + Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGF 494 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541 Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564 >gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae] Length = 565 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 158/503 (31%), Positives = 240/503 (47%), Gaps = 46/503 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSH 59 S + W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + Sbjct: 75 STAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLM 134 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYN 109 FI +L +Q+SL++ I + SN + +E+ C+ + N Sbjct: 135 FIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITAN 194 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166 +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + Sbjct: 195 IEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 254 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------I 218 N ++ + I + F P + Sbjct: 255 NNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSR 314 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKP 274 L+ F K Y ++D+ + GTS LS Y++ G + R Q + E+ + +K Sbjct: 315 LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKALKD 374 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 S +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG P Sbjct: 375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIP 434 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DA MR+L G+++NR RMITASFL K+LL+DWR G+ +FM L+DGD +SN GGW + Sbjct: 435 IVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGGWGF 494 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 +STG D+ PYFR+FN IQ K++DPQ F++ W+PEL +N Sbjct: 495 CSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRPE 541 Query: 455 NYPLPIVDHKKACHHTLNQYYAA 477 NYP P+VD K + L Y A Sbjct: 542 NYPKPLVDLKHSRERALKVYKDA 564 >gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus (fragment) gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus] Length = 339 Score = 226 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 141/340 (41%), Positives = 189/340 (55%), Gaps = 15/340 (4%) Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--- 201 +L YKV+TP+ KA + + + T + + Sbjct: 1 DQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIK 60 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + IGE++A+ L+ F K+++ Y RD P+I GTS+LSPY+ G +S R + Sbjct: 61 KCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYY 120 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 + D A ++L EL WR+FYR + + P C + + ++ W+ D Sbjct: 121 HILNAEADS-----YSAETFLKELAWRDFYRMVHFYEPD-CKDREIMEGYRELNWSHDQD 174 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L +WK+G TGFPI+DA MRQL GWMHNRLRMITASFL KDLL+DWR+GE YF L+ Sbjct: 175 DLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLI 234 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D +SN GGWQWAAS G D+VPYFRIFNP Q KRFD GT+IR ++PELN+VP YIH Sbjct: 235 DYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIH 294 Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475 P + K L +YPLPIVDH K L+ + Sbjct: 295 EPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 334 >gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp. holarctica FSC022] Length = 457 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 95/438 (21%), Positives = 175/438 (39%), Gaps = 27/438 (6%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 +S RQ F+ L ++ L++ G D++E + + + ++ +++ Sbjct: 1 MSHRQYLFLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQET 56 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + + + ++ ++ ++ + + + + +++A Sbjct: 57 WNDWTYQRDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRA 112 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + ++ P S + D G AL IL F ++ Y + Sbjct: 113 PTKLKFICENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTK 167 Query: 233 QRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLN 283 + P S+LSPY++ GV+S ++ + + + ++ K S S+L+ Sbjct: 168 EMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLS 227 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 L W + + PS+ + + + +AWK G TG+P+IDA MR L Sbjct: 228 RLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRAL 287 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW++ R+R + SF L +DWR+ Y D + + Q +G + Sbjct: 288 IATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFTDYEPGIHYS--QVQMQSGTTGI 345 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 RI+NP Q P G FIR WLPEL NV + IH P SL+YP P +D Sbjct: 346 NSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTPWLEKHN---SLDYPDPTIDE 402 Query: 464 KKACHHTLNQYYAAKKQS 481 K+A + Y +K S Sbjct: 403 KQARKFAADNIYKIRKSS 420 >gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130] gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130] Length = 633 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 156/488 (31%), Positives = 231/488 (47%), Gaps = 63/488 (12%) Query: 11 LVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R DLR+ DN+AL A + ++A+F+ +P+ + H S+R+ F +L+ Sbjct: 71 VFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHDRSSRKIDFTLRNLV 130 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L++ I + + + +F N +YE++E+RRD L + Sbjct: 131 SIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNHVFANIEYEVDELRRDIELCSK 190 Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI--------------QNLVQ 171 + S + + ++ PG I + + Y VY+P+ + + Q+ Sbjct: 191 AREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWVSIVNSHLSDYLEEAQDPAP 250 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHI---------- 218 P I + F + M +P GE A I Sbjct: 251 NGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDAASQILQRFLQTKAR 310 Query: 219 --------------LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 ++ Y RD TS+LSPYLS GV+S R+ + Sbjct: 311 ASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLSSGVISIREVLRAIL 370 Query: 265 EEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-- 320 + L K+GA +++EL WR+FY ++A YP + MG+PF+ I W Sbjct: 371 KVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFLEKYSGIIWENHQAP 430 Query: 321 -------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 L WK+G TG PI+DAAMR LN +GW+HNR+RMI A +L K L++ Sbjct: 431 ANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRMRMIVAMYLTKHLMI 490 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR+GE YFM L+DGDLASNNGGWQW+ASTG D PYFRIFNP Q + DP G FIRH Sbjct: 491 DWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHTQSLKADPTGDFIRH 550 Query: 428 WLPELNNV 435 W+PEL N+ Sbjct: 551 WVPELRNL 558 >gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972] Length = 568 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 130/546 (23%), Positives = 202/546 (36%), Gaps = 85/546 (15%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIYA 63 + R D R+TDN L + VI +F P Q + F+ Sbjct: 23 AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + Q G + S+ D +E + S + +L +NR +RD L Sbjct: 83 SLKHLDT--VQLGGRLVCLRGSDC-DCLEVVRS--SGYDIKQLGFNRDITPFARKRDLQL 137 Query: 124 EKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLP 178 E+ R + + PP + N + Y+V++PF +A++Q +QA Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233 TG ++ D ++ L + Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257 Query: 234 ----------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKS 276 RD T+ LSP+L G +S R+ L + + Sbjct: 258 LLRLASVASAKNYSAIRDDIPGDKTTHLSPHLKFGTISIREAMQVALLHLGKEHAFTRQL 317 Query: 277 GAFSWLNELIWR-----------EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + L++ + + +PF+ +W + A Sbjct: 318 IWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQWEWNDAEFTA 377 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 +K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE ++ + +D D+ Sbjct: 378 FKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWYATVAVDYDV 437 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV + IH Sbjct: 438 ANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVSVRTIHK-WD 496 Query: 446 WLDKNDLSLN-----------------------------------YPLPIVDHKKACHHT 470 K + YP PIVD K+ Sbjct: 497 VFCKEGRPADEGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPIVDLKQRTKWI 556 Query: 471 LNQYYA 476 + +Y Sbjct: 557 VERYKK 562 >gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo] Length = 611 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 103/445 (23%), Positives = 171/445 (38%), Gaps = 30/445 (6%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + +L + + + + + KL E Sbjct: 43 RFLLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAKLSIEYDSEPFGKE 98 Query: 119 RDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 RD ++K + S I+ + + LI + ++ Sbjct: 99 RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 158 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEK 226 + + TP + Y +++ ++P GE AL L + + K Sbjct: 159 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 218 Query: 227 VYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + +R + LSPYL G LS R + +L + + + S Sbjct: 219 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPL-SLY 277 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M Q Sbjct: 278 GQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 336 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 337 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF 396 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455 +F + P G+R DP G +IR +LP L P +YI+ P + + K + +N Sbjct: 397 -QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVN 455 Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480 YP P+V+H +A + + +Q Sbjct: 456 YPKPMVNHAEASRLNIERMKQIYQQ 480 >gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group] Length = 547 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 209/500 (41%), Gaps = 56/500 (11%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53 M+ + V +VW RNDLR+ DN+A+ A SDA V V+ P + Sbjct: 42 MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPRISAGSTHYFGFPKT 100 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A ++ F+ L ++++L+++G+ + L S ++ +++ Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRH----GKPEDILPSIAKAVTAHTVYAHKETC 156 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E+ + L+ K L+ VI + + P L + + NL D Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNL--PD 214 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH---------------- 217 + + A+ V + P G Sbjct: 215 VYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMH 274 Query: 218 ------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + K+++ Y E R+ + +++ SP+L+ G LSPR +K Sbjct: 275 FVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVK 334 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + + L ELIWR+++R + A Y + P + +W++D L + Sbjct: 335 RYEKQRIAND--STYWVLFELIWRDYFRFISAKYGNSIFH-LGGPRNVESKWSQDQALFE 391 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 +W+ G TG+P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D Sbjct: 392 SWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYD 451 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN G W + A GND R F+ Q K +DP G ++ +WLPEL ++ + + P Sbjct: 452 PASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP- 509 Query: 445 SWLDKNDLSLNYPLPIVDHK 464 +Y +V K Sbjct: 510 --------GASYIKQVVPLK 521 >gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM 639] Length = 430 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 208/468 (44%), Gaps = 44/468 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQK 70 V R DLR+ DN AL A ++ + K+ +FI P Q S + F+ SL+++ K Sbjct: 5 VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + + + + V +F N Y ++RD+ +++ ++ Sbjct: 64 EL---NGNLNVY----YGYPENIVSKLDM---VNAIFINEDYTPFAIQRDEKMKENALNK 113 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I VLL + +TPF + V + Sbjct: 114 GIKFFSYPDVLLSAEEKKIKIG---RSFTPFYTKARELEVPKPQSVDKSINVERISNSLS 170 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + F + P+ G L +L + Y +++ LSP+L Sbjct: 171 IDFLLTFK---KVESPLLKGGRPEGLMLLDREIDYSRKDYPAEKNYSM------LSPHLK 221 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR+ +++ K ++ +L WR+FY L+A+ G F Sbjct: 222 FGTVSPREVYHK------------KISDQAFTRQLYWRDFYT-LLAYQNPYVFGHSFKTE 268 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +KI+W AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL K L VDWR Sbjct: 269 YDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFLTKVLFVDWR 328 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GE YF ++L+D D A NNG WQW ASTG D + FR+F+P Q +++DP+ FI+ ++ Sbjct: 329 LGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPEAKFIKDYVR 386 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 EL + P IH + YP PIV+ ++ Y++ K Sbjct: 387 ELRDYPPSVIHKVYLHKI-----TGYPSPIVNWRERVEMVKQVYFSTK 429 >gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium lipophiloflavum DSM 44291] Length = 440 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 128/496 (25%), Positives = 196/496 (39%), Gaps = 80/496 (16%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS +VW R+DLR+ DN AL A V+ +++ GI + ++ SL Sbjct: 1 MSTPTIVWFRDDLRLADNAALTWATER--GPVVGLYVHETV---GRGIGRAAAWWLRHSL 55 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL I D E + + + R + + K Sbjct: 56 DALRESLPAPLIEL-------AGDPREIVPRLARELGAAVTWNRRYHLTDIDAEVKEATG 108 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + H + V Y+V+TPF A L+ A LPVP I Sbjct: 109 AVSHPGYLLTEPWDVRA----------TPYRVFTPFFNAARSVLLDAPPTPLPVPHITPA 158 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + ++ GE A L++F Y + TS L Sbjct: 159 DIGPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIAASADYD----NNALDGVTSGL 214 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G +SP + W + GA+++ +L+WR+F H P + Sbjct: 215 SPHLRFGEISPAEVWLAAVDA----------GAWAFARQLLWRDFAWHRYYHVPDMATKN 264 Query: 306 PFIPWTEKIEWN----------------------KDSHLLQAWKQGYTGFPIIDAAMRQL 343 + + L AW+ G TG P++DA MR+L Sbjct: 265 VRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLVDAGMREL 324 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G MHNR+RM++ S+L K+L + WR GEE+F L+D D ASN WQW A +G+D+ Sbjct: 325 WATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVAGSGDDAA 384 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFRIFNP Q ++FDP G+++ WLP+ + +Y P+ D Sbjct: 385 PYFRIFNPLTQAEKFDPHGSYVARWLPD---------------------TADYSEPMADV 423 Query: 464 KKACHHTLNQYYAAKK 479 K++ L Y K Sbjct: 424 KQSRLRALVAYDDIKN 439 >gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1] Length = 685 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/548 (20%), Positives = 182/548 (33%), Gaps = 85/548 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + +F P + + F+ + K Sbjct: 59 IYWFRTDLRLHDSPALKAALDLDPSVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 118 Query: 71 SLSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + +VT + + + + RD ++ + + Sbjct: 119 SITKVNSNSKLFVLR----EAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAAK 174 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I+ + +A L Q + G Sbjct: 175 DAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQLQAAGSKLGQVKKPIPAPKNLPDPGD 234 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL---------------------------- 219 + + D + G++ I Sbjct: 235 MPVNFDQDEPDTKPDFNSEIRTEGDKTYTKISGPKGDFAIETMEELGFPPATTPHRGGET 294 Query: 220 -----------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 K Q T+ LSP+L G LS R+ + R+K+ V Sbjct: 295 LALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKDV-V 353 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 D S S + +L++R+ Y A V P+ I W+ S Sbjct: 354 DSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPETGL 413 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 414 VTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRGGCY 473 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW + + S YFR ++P G+++D +G FIR Sbjct: 474 IDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFSQ-YFRCYSPVAFGQKWDKKGEFIR 532 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471 ++PEL N+ +YI+ P + YP P+ D K + Sbjct: 533 RYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGDGLNNVEEGTYPKPMFDFAKRRDVCI 592 Query: 472 NQYYAAKK 479 + A + Sbjct: 593 SSMKVAYQ 600 >gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri] Length = 787 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 118/492 (23%), Positives = 193/492 (39%), Gaps = 50/492 (10%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 ++W RNDLR+ DN + A +SD +V+ V++ ++ + F Sbjct: 248 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 307 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI 114 + ++ SL G + D E + Q VT + Sbjct: 308 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 367 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQA 172 R++ + + P + + + V+TPFR + Sbjct: 368 ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVR 427 Query: 173 D---------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 D P + + R D + F G Sbjct: 428 DVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGG 487 Query: 212 EQNALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 E NAL ++ + E Y E R+ + +++L+P+L++G +SPR + ++ Sbjct: 488 ESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYES 547 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + + + ELIWR+F++ + + W +D +L+AWK Sbjct: 548 ERVENK--STYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEKILKAWKT 604 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+P+IDA MR+L G+M NR R AS+L D +DWR G ++F LLD D ASN Sbjct: 605 GTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLLDYDTASN 664 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W A+ G R FN Q K +DP G +I+ W+ EL VP YI P+ Sbjct: 665 WGNW--CAAAGMTGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIADPNQAPR 721 Query: 449 --KNDLSLNYPL 458 ++ + LNYP Sbjct: 722 ELRDRIGLNYPN 733 >gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 205/456 (44%), Gaps = 26/456 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62 V ++W RNDLR+ DN ALY A +SD ++ V+ P + A + F+ Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLM 100 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E L S +F +++ EV ++L Sbjct: 101 ECLVDLRKNLMKRGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 156 Query: 123 LEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L+ + + S + + + VYT FRK++ +P+ Sbjct: 157 VNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPL 216 Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVY---YYVEQ 233 ++P P + M +G ++A K Y E Sbjct: 217 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 276 Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +++ SP+L+ G +SPR + ++ + + + L ELIWR+++R Sbjct: 277 RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN--STYWVLFELIWRDYFR 334 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 L + P +W++D L ++W+ TG+P+IDA M++L+T G+M NR Sbjct: 335 FLSIKCGNSLFH-LGGPRNVNGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNR 393 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R I SFLV+D+ +DWR+G E+F + LLD D SN G W + A ND R F+ Sbjct: 394 GRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV-NDPRE-DRYFSIP 451 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 Q + +DP+G ++ WL +L +P + H P + Sbjct: 452 KQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMY 487 >gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927] gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei] Length = 568 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 130/546 (23%), Positives = 201/546 (36%), Gaps = 85/546 (15%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIYA 63 + R D R+TDN L + VI +F P Q + F+ Sbjct: 23 AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + Q G + S+ D +E + S + +L +NR +RD L Sbjct: 83 SLKHLDT--VQLGGRLVCLRGSDC-DCLEVVRS--SGYDIKQLGFNRDITPFARKRDLQL 137 Query: 124 EKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLP 178 E+ R + + PP + N + Y+V++PF +A++Q +QA Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ----- 233 TG ++ D ++ L + Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257 Query: 234 ----------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKS 276 RD T+ LSP+L G +S R+ L + + Sbjct: 258 LLRLASVASAKNYSAIRDDIPGDKTTHLSPHLKFGTISIREAMQVALLHLGKEHAFTRQL 317 Query: 277 GAFSWLNELIWREFYR-----------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + L++ + +PF+ +W + A Sbjct: 318 IWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQWEWNDAEFTA 377 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 +K G TGFP++DAA+R L GW HNR RM+ A+FLVK L VDWR GE ++ + +D D+ Sbjct: 378 FKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWYATVAVDYDV 437 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+N+GGW W++ G D+ PYFR FNP Q + DPQ FI+ W+PEL NV + IH Sbjct: 438 ANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVSVRTIHK-WD 496 Query: 446 WLDKNDLSLN-----------------------------------YPLPIVDHKKACHHT 470 K + YP PIVD K+ Sbjct: 497 VFCKEGRPADQGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPIVDLKQRTKWI 556 Query: 471 LNQYYA 476 + +Y Sbjct: 557 VERYKK 562 >gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus] Length = 549 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 203/500 (40%), Gaps = 47/500 (9%) Query: 8 SVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 ++ +VW + DLR+ D++ L A NS + V VF + +SA + F+ Sbjct: 22 TIGVVWFKCTDLRLEDHEPLALAHRNS-SHVAHVFCIDDRWFGHSRRGTRRMSAARCRFL 80 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +Q L KG + + ++ + E Sbjct: 81 LESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHA 140 Query: 122 LLEKRL-------------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 ++ L + + + +++ P + + +V+TPFRKA+ N Sbjct: 141 AVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPN 200 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---------------MFPIGEQ 213 LP P L + + + + F GE Sbjct: 201 CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGET 260 Query: 214 N--ALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 + ++ + Y R+ +S+ SP+L++G LSPR +++ D Sbjct: 261 AGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYETDR 320 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQG 329 + + + EL+ R+F+R+ Y + +++ W D+ LL AWK+G Sbjct: 321 IAND--STYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAAWKEG 378 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+P +DA MR+L G+M NR R + ASF KDL +DWR+G E+F LLD D ASN Sbjct: 379 RTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDPASNY 438 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448 G W + A G D R F+ Q + +D G ++RHWLPEL + T+ + + Sbjct: 439 GNWNYVAGVGFDPRE-DRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGGITAT 497 Query: 449 ----KNDLSLNYPLPIVDHK 464 + + YP P+V K Sbjct: 498 LREVHSVPTSVYPDPVVPLK 517 >gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake phycodnavirus 2] Length = 439 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 222/471 (47%), Gaps = 40/471 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQ 69 + D R DN L A + D +I +FI TPEQ +++ S F+ SL +++ Sbjct: 4 IFIFHRDYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEELR 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 I + D+++ L ++ + +N+ Y + RD+ ++ Sbjct: 63 DH-----IPLHIF----YGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCVK 113 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + I C +D +L P G Y VYTPF+ ++++ + I Sbjct: 114 KNINCVQIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSIPNTQNHPLKHLIYHKPLE 173 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S DY G +N L L + ++ T+QLS Y Sbjct: 174 HISYYSPNLDYYTYNPHNNVKGGRKNGLKYLHTNIDYEDQLSIK---------TTQLSAY 224 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP-F 307 + G LS R+ ++ K+E + +LIWREFY ++ +YP++ F Sbjct: 225 IKYGCLSIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVAF 271 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 +KI+W + L+ WK+G TGFP++DA MRQLN G+MHNR R+I ++FL + L + Sbjct: 272 QMKYDKIKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLGL 331 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFIR 426 DWR+GE YF QL+D D NNG WQW +S G D+ PY R+FNP +Q KRFDP +I+ Sbjct: 332 DWRLGELYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYIK 391 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 W+PELN+VP IH D+ Y LPI+D+ A +L Y Sbjct: 392 EWIPELNDVPPNEIHQ-WDLHGDPDI---YILPIIDYTMARERSLQMYRTI 438 >gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 363 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 152/326 (46%), Positives = 205/326 (62%), Gaps = 6/326 (1%) Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMF 208 Y+VYTP+ + L A + ++P P + +P +P FD P +AI ++ Sbjct: 34 GDCYRVYTPYARTCRDRLRTAPVVAVPPPRPQTPPDWSPDPLPDTFDGFARPSEAIRALW 93 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 P GE A L F + + Y ++RD P++ GTS LSPYL+ GVLSP Q Sbjct: 94 PAGEAAAGDRLEAFTEGVIDAYKDERDFPSLPGTSCLSPYLAAGVLSPGQALRAALSANH 153 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 L K+GA +W+NEL+WREFY+HL+A YPS+ M +P P T + W L+AW+Q Sbjct: 154 GELDSGKAGAATWINELLWREFYQHLLAAYPSLSMHQPMKPETAAVPWRDAPDDLRAWQQ 213 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+DGDLA+N Sbjct: 214 GKTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAWFMAHLVDGDLAAN 273 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 NGGWQW+ASTG D+VPYFR+FNP Q +RFDP+G F+R WLPEL ++ + IH P Sbjct: 274 NGGWQWSASTGADAVPYFRVFNPLSQSRRFDPRGVFLREWLPELADLDDKAIHDPSPMER 333 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQY 474 YP+PIVD ++ L + Sbjct: 334 AA---AGYPMPIVDLAQSRLRALEAF 356 >gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 126/516 (24%), Positives = 198/516 (38%), Gaps = 44/516 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWR---QHGISARQSHFIY 62 V L R DLR+ DN L A C + + V+ F P Q F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL+ + + +Q + S+ ++ + + + +V + R Sbjct: 87 ESLVDLDGA-AQLSNGLVCLRGSD-EECLRRIRDSGYEVKVLGFNEDYTPFALSRDRLLR 144 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVP 180 V D L P + Q Y V+TPF K + A+ V Sbjct: 145 DYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGNVK 204 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQRDIP 237 ++ P + P + + R C E + Y + RD Sbjct: 205 KVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLACVETLRRYADVRDDI 264 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR--------- 288 A TS LSP++ G +S R+ W+ + + + ++ Sbjct: 265 AGDKTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQ 324 Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + + PF P + WN + +A+K+G TG P++DAA+R L Sbjct: 325 LNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGVPLVDAAVRCLTA 384 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNGGW W++ G D+ PY Sbjct: 385 TGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADAQPY 444 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------------- 451 FR FN Q +RFDP FI W+PEL VP +H + K+ Sbjct: 445 FRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDKATTNYSKKRDDM 504 Query: 452 -----LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP+PIVD K A + +Y K + Sbjct: 505 GKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540 >gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545] Length = 561 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 182/500 (36%), Gaps = 61/500 (12%) Query: 11 LVWLR-NDLRITDNK------ALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQS 58 L+W R DLR+ DN AL A + D V+ VF P W R++ Sbjct: 12 LLWFRGTDLRLRDNLVVDAASALV-ASGSGDVDVLPVFCFDPRTFAASAWGTPKTGGRRA 70 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ S+L +++SL G + + Y L+ + + E R Sbjct: 71 RFLLESVLDLKRSLRDVGSDLLV----AVGKPEDVIPRYLLEGGTNVVLTQEEVHQEERR 126 Query: 119 RD----------KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 D D + + KA ++ Sbjct: 127 VDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVESKATVRA 186 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----------- 217 + A P D PF D + Sbjct: 187 PAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNAVLPFEGGETA 246 Query: 218 -----ILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 + EK+ Y E R+ + +S+LSP+L+ G +S R +++ + + Sbjct: 247 ALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVSARHVHREVRKYERERV 306 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQA 325 + + ELIWR+F+ + + + W D L+A Sbjct: 307 E--NKSTYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGTWTGGAGPWRDDPAALKA 364 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 WK+G TGFP++DA MR+L G+M NR R AS+L D VDWR+G EYF S L+D D Sbjct: 365 WKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVDWRLGAEYFESALIDYDC 424 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 A+N G W ++ G FN Q K +DP G +++ W+PEL +VP ++ P Sbjct: 425 AANWGNW--VSAAGLTG-GRVNKFNIAKQTKDYDPDGRYVKTWVPELKDVPKGFVADPRR 481 Query: 446 WL------DKNDLSLNYPLP 459 + ++YP P Sbjct: 482 MPGDVAKSAGCVVGVDYPAP 501 >gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904] Length = 541 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 128/519 (24%), Positives = 196/519 (37%), Gaps = 50/519 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWR---QHGISARQSHFIY 62 V L R DLR+ DN L A C + + V+ F P Q F Sbjct: 27 VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRR 119 SL+ + + +Q + S+ E L + +V + R Sbjct: 87 ESLVDLDGA-AQLSNGLVCLRGSD----EECLRRIHDSGYEVKVLGFNEDYTPFALSRDR 141 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSL 177 V D L P + Q Y V+TPF K + A+ Sbjct: 142 LLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWG 201 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---LRKFCKEKVYYYVEQR 234 V ++ P + P + + R C E + Y + R Sbjct: 202 NVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLACVETLRRYADVR 261 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR------ 288 D A TS LSP++ G +S R+ W+ + + + ++ Sbjct: 262 DDIAGDKTSHLSPHMKCGTVSTREVWHASVQALGTGHPFTRQLVWREFYAMLAFTRPRLL 321 Query: 289 ------EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + + PF P + WN + +A+K+G TG P++DAA+R Sbjct: 322 QGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGVPLVDAAVRC 381 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW HNR R++ ++F VK L +DWR E +F + +D D+A+NNGGW W++ G D+ Sbjct: 382 LTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWLWSSGQGADA 441 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----------- 451 PYFR FN Q +RFDP FI W+PEL VP +H + K+ Sbjct: 442 QPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDKATTNYSKKR 501 Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YP+PIVD K A + +Y K + Sbjct: 502 DDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540 >gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex] Length = 525 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 115/503 (22%), Positives = 190/503 (37%), Gaps = 38/503 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQ 67 ++++W R LRI DN AL +A NS IA+F+ ++ G + F+ L Sbjct: 1 MNVLWFRRGLRIHDNPALLSALENSKD-FIALFVFDTT-FQDPGYKPYHMNGFLLECLHD 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G Q +E + + KL + + E RD + Sbjct: 59 LNESLESVGTKLHVFQGC----PLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + L + + T + V + + P + Sbjct: 115 SELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVGDPPKPVADPEWKGVKF 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-------------KFCKEKVYYYVEQR 234 +T F + + IG R F R Sbjct: 175 LTLEPFESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFR 234 Query: 235 DIPAIQG---------TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 LS +S+G +S R + R+ E F + ++ Sbjct: 235 SGFYQPNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQI 294 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 IWR+++ + M+ + P +I W ++ + WK G TG+P IDA MRQLN Sbjct: 295 IWRDYF-YAMSRMNPKFDKEVDNPICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQ 353 Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV- 403 GWMH+ +R A FL + DL ++W IG EY +QL+D D + N+G W W +S+ + + Sbjct: 354 EGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFERLL 413 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457 N + GKR +P G +IR ++PEL N +YIH P + +YP Sbjct: 414 DCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPIDIQRTANCIIGQDYP 473 Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480 +V H++ L +++ Sbjct: 474 AQMVVHEEVLPRNLEWMKEFRQK 496 >gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis] gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis] Length = 578 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 125/509 (24%), Positives = 199/509 (39%), Gaps = 71/509 (13%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62 +VW RNDLRI DN+ L+ A +S+A V+ V+ P ++ A ++ FI Sbjct: 57 TAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTGALRAQFII 115 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L ++K+L ++G+ E L S ++ +++ EV +KL Sbjct: 116 ECLADLKKNLMKRGLNLLIRH----GKPEEVLPSLAQAFAAHTVYAHKETCSEEVHVEKL 171 Query: 123 LEKRLQH----------------------------------------RVICKSFDDSVLL 142 + K L F + ++ Sbjct: 172 MNKALHRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDFFDFRKARII 231 Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYP 200 P +L + K + ++L VP+I G F Sbjct: 232 PFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVEDWGCVPSIHQLGLEEQKARGMRFLGG 291 Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKV----YYYVEQRDIPAI-QGTSQLSPYLSIGVLS 255 A + Y E R+ +++ SP+L+ G LS Sbjct: 292 ESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYSTKFSPWLAQGSLS 351 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 PR + +K + L L L+WR+ +R + P Sbjct: 352 PRFIYEEVKRYERERLAND--STHRVLFVLLWRDHFRFFSIKCGNSIFH-LGGPRNVAQR 408 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 W++D L ++W+ G TG+P+IDA M++L+ G+M NR RMI SFLV+D+ VDWR+G E+ Sbjct: 409 WSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCSFLVRDMGVDWRMGAEW 468 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F + LLD D SN G W + A GND+ R F+ Q + FDP+G ++ +WLPEL + Sbjct: 469 FETCLLDYDPCSNYGNWTYGAGIGNDNRE-DRYFSIPKQAQSFDPEGEYVAYWLPELRKL 527 Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 H P ++Y IV K Sbjct: 528 QKDKRHFP---------GMSYVERIVPLK 547 >gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126] gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126] Length = 475 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 118/480 (24%), Positives = 214/480 (44%), Gaps = 29/480 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ--- 57 MK L+W R +LR+ DN+AL NS+ ++ ++I +W+++ + ++ Sbjct: 1 MKKKHR--KSLIWFRKNLRLKDNQALLEGVQNSEKYLL-LYIFDEREWKKNPVGLKRSSD 57 Query: 58 --SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +F++ S+L +++++ KG + D+ + + ++ + L+ ++ Sbjct: 58 KKLNFLWQSVLDLKQNIEAKGGQLVMLK----GDAEDLIQRLSIENKFDALYAPKESGTE 113 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQN-----L 169 E +K +E F I ++ ++T FRK + L Sbjct: 114 EFELEKSVEDFFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRKENEKQTGVRDL 173 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 ++ ++ + I ++ + +++ Sbjct: 174 FESPEDLSASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQLKE 233 Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y R+ + +S+ SP+L++G +SP+ + ++K+ + + + ELIWR Sbjct: 234 YKNTRNGLLGERYSSKFSPWLALGCISPKSIYYQVKQYEKERKKNQ--STYWMIFELIWR 291 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++ ++ + + K I + ++W D L + WK TG P IDA MR+LN G+ Sbjct: 292 DYFHFVLKKFGAQLFQKEGIKG-KGVDWKWDLELFEKWKTAETGVPFIDANMRELNATGF 350 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFLVKDL +DWR+G YF QL+D D+ASN G W + A GND R Sbjct: 351 MSNRGRQNVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPRE-NRY 409 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVD 462 FN Q K++D +G ++RHW+PEL + IH + LN Y P+VD Sbjct: 410 FNILSQAKKYDVKGDYVRHWIPELKEIEGFNIHKVSLMNEVALEKLNLIIPDIYLRPVVD 469 >gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 476 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 154/492 (31%), Positives = 236/492 (47%), Gaps = 26/492 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + T + + W+R DLR++DN+AL AA A VI VF+ P G + + F Sbjct: 1 MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDP-ILDSLGAAP-KWRF 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + + +L +G Y + D++E L + + ++++R Y+ ++V RD Sbjct: 58 GLGA-AALDAALRDRGSRLIYRK----GDALETLRALVSETGAETVYWSRAYDPDQVARD 112 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 K ++ LQ + +SF +L+ P ++ + YKVYTPF KA+ + + Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDR 172 Query: 180 PAIRLTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 P + + + + P IGE A L F +V Y RD Sbjct: 173 IPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVGDYDRARD 232 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 IP I+GTS+LS L+ G + P CW + + GA ++L EL+WREF HL+ Sbjct: 233 IPGIEGTSRLSENLTYGEIGPATCWQAGQRALAEGKA----GAETFLKELVWREFAYHLV 288 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P + + W D+ + W++G TG +DAAMR++ G MHNR RM Sbjct: 289 WHTPHLIEKNW-RAEWDHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGTMHNRGRM 347 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+L K L+ WR+G+ +F L+D D ASN GWQWAA +G D+ PYFR+FNP Q Sbjct: 348 IVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRVFNPDTQL 407 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHT 470 +FD ++ R ++ E P + A P SW D + YP PIV + Sbjct: 408 DKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA--YPDPIVPLDEGRKRA 465 Query: 471 LNQYYAAKKQSL 482 L+ Y A+K + Sbjct: 466 LDAY-QARKDAA 476 >gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893] Length = 440 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 105/432 (24%), Positives = 179/432 (41%), Gaps = 25/432 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63 V L W DLR+ DN AL AA + ++ V++ P + + + A + F++ Sbjct: 2 VSLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQ 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ +++ L G F + + + ++ +R E + K L Sbjct: 60 SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 +L V + S+ L L + ++ + L + + Sbjct: 116 RDKLPQTVFQQFETLSLFTE--GSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLT 173 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------ALHILRKFCKEKVYYYVEQRDIP 237 P + P +P PIG + F ++ +Y E R+ Sbjct: 174 ALPPAPGYPQDNRGECP-AIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETRNAL 232 Query: 238 AI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +S+LSP+L+ G LS R+ + + + + EL+WRE++ Sbjct: 233 DEADASSRLSPWLANGALSAREVADTISDYENQ--HVKNESTYWLWFELLWREYFYWYAL 290 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + +K + H +AW G T +P+++AAM QL G++ NR R I Sbjct: 291 KHGASLFHRDGV-QQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGYISNRSRQI 349 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS LV +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q + Sbjct: 350 VASCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKG-PRHFNLEKQAR 408 Query: 417 RFDPQGTFIRHW 428 +FDP G F++ W Sbjct: 409 QFDPDGDFVKRW 420 >gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa] gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa] Length = 552 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 123/526 (23%), Positives = 213/526 (40%), Gaps = 72/526 (13%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-------HGISARQSHFIY 62 +VW RNDLR+ DN+ L+ A NS++ V+ V+ P ++ + FI Sbjct: 37 AIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIV 95 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 L+ ++K+L ++G+ E + + ++ ++ EV +KL Sbjct: 96 ECLVDLKKNLMKRGLNLLIRH----GKPEEIIPALAKDFASHTVYAQKETCSEEVNVEKL 151 Query: 123 LEKRLQHRVICKSF-----------------DDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + K L+ + S + + + VYT FRK++ Sbjct: 152 VSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVYTQFRKSV 211 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR----- 220 + + +P Q + F + + Sbjct: 212 EARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSKGMRFLGGET 271 Query: 221 ---------------------KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258 C + + Y E R+ + +++ SP+L+ G LSPR Sbjct: 272 AALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRF 331 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 + +K + + L ELIWR+++R + Y + P + W++ Sbjct: 332 IYEEVKRY--EKGRLANDSTYWVLFELIWRDYFRFISFKYGNSIFH-IGGPRNVERRWSQ 388 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D L +W+ G TG+P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + Sbjct: 389 DQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 448 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D SN G W + A GND R F+ Q + +DP+G ++ +WLP+L +P + Sbjct: 449 FLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQTYDPEGEYVAYWLPQLQELPKE 507 Query: 439 YIHAPHSWLDKNDLSLNYPLPIVDHKKAC---HHTLNQYYAAKKQS 481 + P Y IV K H ++ AA+K + Sbjct: 508 KRNFP---------GKLYMEQIVPLKFGNPNGHRGQDRASAARKTN 544 >gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus] Length = 571 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 192/498 (38%), Gaps = 56/498 (11%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64 +VW + +DLR+ D++ L A S A+V VF + Q +SA + F+ S Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRES-AQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLES 84 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-------FYNRQYEINEV 117 + ++ L ++G + + + + + + + E +V Sbjct: 85 VADLRARLRERGSDLLVRR----GHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADV 140 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA----LQMYKVYTPFRKALIQNLVQAD 173 + H + P + V++ Sbjct: 141 HAAVKSALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESK 200 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN------------------- 214 P + L P P D + P E+ Sbjct: 201 YSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGG 260 Query: 215 -----ALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + ++++ Y R+ +S+ SP+L++G LSPR +++ Sbjct: 261 ETAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYET 320 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWK 327 D + + + EL+WR+F+R+ + T + W D+ L+AWK Sbjct: 321 DRIAND--STYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWK 378 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+P+IDA MR+L G+M NR R + ASF +DL +DWR+G E+F LLD D AS Sbjct: 379 EGETGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPAS 438 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N G W + A G+D R FN Q K +D +G ++RHWLPEL +PT + P Sbjct: 439 NWGNWNYVAGVGSDPRE-GRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGGIT 497 Query: 448 -----DKNDLSLNYPLPI 460 + YP PI Sbjct: 498 TMLRHMHAIPTSVYPDPI 515 >gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus] Length = 531 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 102/451 (22%), Positives = 175/451 (38%), Gaps = 30/451 (6%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F+ SL + SL + + + + VT+L + Sbjct: 5 VGINRWRFLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLAFEYDS 60 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 E RD + K + + ++S I+ + +A+I + Sbjct: 61 EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMEL 120 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILR 220 + + ++ Y +++ ++ GE AL L Sbjct: 121 PKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLD 180 Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 K + K + +R + LSPYL G LS R + RL E + + Sbjct: 181 KHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTP 240 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 S +L+WREF+ P + P +I W+K+ L W +G TGFP I Sbjct: 241 PL-SLYGQLLWREFFYTAATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWI 298 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA M QL GW+H+ R A FL + DL + W G F LLD D + N G W W Sbjct: 299 DAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWL 358 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------K 449 + + +F + P G+R DP G +++ +LP+L P++YI+ P + + K Sbjct: 359 SCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAK 417 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + ++YP P+V+H + + + +Q Sbjct: 418 CIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 448 >gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC 23834] Length = 438 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 192/459 (41%), Gaps = 26/459 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 LVW R DLR D AL AA S ++ +++ + ++AR+ +FI+ SL Sbjct: 4 PTTLVWFRQDLRTDDQPALQAAAR-SGRPLLGLYVW----PNEGMLTARRRYFIWQSLRD 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q L++ GI + + ++ + R ++ R L ++ Sbjct: 59 LQARLAECGIPLHVRE----GNPVQAVVETAAHCRAAEVVCASDGAGQGALRAVLEKQGC 114 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + ++ A ++ + P P + Sbjct: 115 RLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPDLAAQQQ 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 P N+ P GE A L +F YY V R +PA G+SQLSP Sbjct: 175 RLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLPRLPYYPVL-RSLPAQHGSSQLSP 233 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS R+ W W L REF+RH YP V Sbjct: 234 HLVFGTLSVRRAWAAASNTPDAAA---------WQEALARREFWRHYFRQYPDVLRQDL- 283 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + + LL AW+QG TG+P+ DAAMR L GW+ + LR A+F + L Sbjct: 284 --PEHRAAGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFFCRVLGG 341 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIR 426 W+ G +F QLLD + A+N+G WQ AA G R FNP + ++ DP G FIR Sbjct: 342 RWQDGAGWFARQLLDFEPAANSGNWQLAAGLG--GKQVERQPFNPVVWSQKLDPDGQFIR 399 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465 LP+L ++ ++ IHAP + + + YP P+VD++ Sbjct: 400 RHLPQLAHLDSRRIHAPWLAAAEVN-TNGYPAPVVDYRA 437 >gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 519 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 103/504 (20%), Positives = 183/504 (36%), Gaps = 41/504 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + WL+ +LR+ D++ + + KV+ ++ PE +Q +S + FI +L Sbjct: 1 MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + G ++++ LD Q +TK++ +++ N + Sbjct: 61 ELDRDFQSIGGKLL----QAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVAA 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + L +++ + DL P Sbjct: 117 WCADHGVELLELAQNGIARGSQKPELFPPYFACSVSSK-LRDPIGTDLAERFAPLP--FP 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P IP+ L+ K Y + A QG S++S Sbjct: 174 SCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYPFQISSPNTAWQGCSRIS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------SWLNELIWREFYRHLMAFY 298 YL+ G++S R+ + + D + + F +L+ L WR Y Sbjct: 234 TYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFYLDRLSWRRQYMQTFEAS 293 Query: 299 PSVCMGKPFIPWTEKIEWNKDS----------------HLLQAWKQGYTGFPIIDAAMRQ 342 P + + E + AWKQG TGFP IDAAMR Sbjct: 294 PELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTAWKQGLTGFPYIDAAMRF 353 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 LN GW++ RLR SF +L + EY ++ LD + ++ Q A G Sbjct: 354 LNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEPGIHHVIHQIIA--GTTE 411 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLS--LNY 456 +++P QG+ D G FIR W+PEL +VP +H + ++ + Y Sbjct: 412 FNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHDLAKTAFRLSKQAEIRGYMPY 471 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480 P IVDH+ ++ ++ Sbjct: 472 PEAIVDHRATAKKAKDRVSDLRRS 495 >gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter antarcticus 238] Length = 445 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 85/420 (20%), Positives = 148/420 (35%), Gaps = 26/420 (6%) Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 ++ G DS + + L V+ ++ + + + ++L Sbjct: 2 AELGQHLVV----KVGDSCDVIKKLHLDHDVSHVYAHEETGNLWTYHRDIAVQKLCQNHR 57 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 P ++ + + ++ P ++ Sbjct: 58 ----IALHEAPTNGVVRRLRSRDDWSKIRNARMAKKILPKPNTLNSFPPCSSDTLPDKND 113 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLS 250 + I + G + A+ LR F + Y+ P S+LS +L+ Sbjct: 114 ----PIFGNVPIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLA 169 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKP 306 G LS R+ + + L ++ + L WR + + P + Sbjct: 170 WGTLSVREVAQSIVKRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETHCM 229 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + QAW G TG+P +DA MR L GW+ R+R + SF L Sbjct: 230 HPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLW 289 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DWR+ E+ D + + Q +G + R++NP Q DP+GTFIR Sbjct: 290 LDWRVTGEHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIR 347 Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 W+PEL +VP ++IH P W L +YP P+VD + Q A +K Sbjct: 348 KWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 407 >gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2] Length = 503 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 115/510 (22%), Positives = 184/510 (36%), Gaps = 62/510 (12%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----------ISAR 56 L W R D R+ + A +V+ V+ P ++ A Sbjct: 4 PTSLAWFRRDHRL--HDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAH 61 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ F SL ++ SL +G + L + + + E Sbjct: 62 RARFRLESLADLRASLRDRGSDLVVRE----GRPESVLPEVAAAVDADFVTVHTRPTPEE 117 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172 R + +E L+ + L L AL + ++ + Sbjct: 118 SRVESAVETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAAEDAGTG 177 Query: 173 ------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214 L VP + P + ++ Sbjct: 178 DAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDDRG 237 Query: 215 ALHIL------------RKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWN 261 L + + + Y E R+ +S+ SP+L+ G LSPR Sbjct: 238 VLPFDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYV-- 295 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 + + + + + + EL WR+F++ A + S C + I I+W +D Sbjct: 296 KAEVDRYEDRRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRDDA 355 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + W G TG P +DA MR+LN G+M NR R ASFL DL +DWR G YF ++L+ Sbjct: 356 QFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETRLV 415 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D D ASN G W + A GNDS R F+ Q R+D +++ WLPEL+ +P +Y H Sbjct: 416 DYDPASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEYAH 473 Query: 442 APHSWLDKND------LSLNYPLPIVDHKK 465 P L ++YP P+VD Sbjct: 474 EPWKLSGAEQASYGVELGVDYPEPMVDFSD 503 >gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens] Length = 526 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 104/477 (21%), Positives = 173/477 (36%), Gaps = 33/477 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGISARQS 58 +VWLR++LR+ DN L A V+ V++ + A+++ Sbjct: 10 PTTIVWLRDELRVHDNALLAEAAARG-GPVLPVYVLDDRVFDAAATSESGGSRKCGAKRA 68 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F +L ++ +L +G + + L C +E R Sbjct: 69 RFTLEALDDLRATLGARGSGLVVER----GRPADVLAGLCAAVGGDATVLCSDAACSEER 124 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK--------VYTPFRKALIQNLV 170 +D+ ++ + H L + Sbjct: 125 KDEAAVAKVAPLAKVWEGTLYHPEDLRGVAFHDLFTAWRTKVEKAGTRVRGDVFPKAATL 184 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA---LHILRKFCKEKV 227 A + + D P G + A F ++++ Sbjct: 185 PAPPAGVDAKLAAPLPTLDALGYDAADAACDGRGDFFAPAGGETAALARLRKYVFEEDRL 244 Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y RD + +++L+P+LS G +SPR + + + + EL Sbjct: 245 KDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACAD-YERTRGIKNKSTYWVVFELT 303 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR+++ Y S + + W D L+ WK G TG P++DA MR+L Sbjct: 304 WRDYFVFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAPLVDANMRELAAT 363 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R AS+LV DL +DWR+G E+F L+D +N G W AA V Sbjct: 364 GFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHAAAGLSGGRVNR- 422 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPLPI 460 FN Q K +DP+G +++ W+PEL VP P S + + +YP P+ Sbjct: 423 --FNILKQSKDYDPKGDYVKLWIPELAKVPAPQCFTPSSLSKADREAAGAGDYPAPL 477 >gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes M49 591] Length = 381 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 141/389 (36%), Positives = 198/389 (50%), Gaps = 17/389 (4%) Query: 87 FDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP-P 144 + D + + Q T +++N RD+ + + I L Sbjct: 2 YGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGS 61 Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204 I+N + Q YKV+TP+ + + ++ L + + + Sbjct: 62 QEIINQSGQPYKVFTPYYRXWQNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKY 121 Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + A L +F ++++ Y RD PA GTS+LSP+L IG + R ++ ++ Sbjct: 122 QDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 179 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + L G ++L EL WR+FY + YP +P +IEW + Q Sbjct: 180 QAPNSL------GQATFLKELAWRDFYNMVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQ 232 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 WK+G TG+PI+DAAM QL GWMHNRLRMI ASFL KDLL DWR+GE+YF QL+D D Sbjct: 233 LWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYD 292 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 ASN GGWQWAASTG D+VPYFRIFNP QGKRFDP+G FI+ +LP+L +VP +Y+H P Sbjct: 293 AASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPW 352 Query: 445 SWLD------KNDLSLNYPLPIVDHKKAC 467 + +Y PIVDH K Sbjct: 353 KMPKNLQESVSCIIGTDYAQPIVDHAKQR 381 >gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC 7335] Length = 550 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 112/498 (22%), Positives = 183/498 (36%), Gaps = 51/498 (10%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLRI D++ LY A ++ VF+ + + + F+ + L Sbjct: 1 MNRTVVWFRRDLRIADHEPLYRAARR--GLIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L +G D +E L + + ++ YE R + Sbjct: 59 ALDEDLRSRGGRLILRS----GDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R K + + + I + Sbjct: 115 ALTREGLKVRWF----------EPLGGTPDLVPYPDYRQLWYQSVRSPQIPTPQKIEVPP 164 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQGTSQ 244 ++ +P + + P G F + K Y Q P+ TS Sbjct: 165 DISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANATSG 224 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL G +S R+C + + D A L+ L W + + P Sbjct: 225 LSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRYLPQ 284 Query: 301 VCMGKPFIPWTEKIE-------------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI- 346 + + + P+ W+ + +AWK G TG+PIIDAA R L Sbjct: 285 LEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLKETG 344 Query: 347 GW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-- 402 GW ++ R+R I ASFL + +DWR G +FM L+DGD ++ +QWA G Sbjct: 345 GWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDH--YQWAQQAGVTHCL 402 Query: 403 -VPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 + RI+NP + R DPQG F+ WLPEL ++ + + P YP PI Sbjct: 403 NKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPKV-------KGYPQPI 455 Query: 461 VDHKKACHHTLNQYYAAK 478 +++ +A + + Sbjct: 456 LNYAQARDRRTKRIDDLR 473 >gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256] gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis RB2256] Length = 457 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 26/463 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLR DLR+ D+ + VI VFI E I A Q +++ SL Sbjct: 1 MTASLLWLRQDLRVHDHP--ALLAAIAGGAVIPVFILDDETPGTWKIGAAQRWWLHHSLT 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + SL ++G + + L + ++ YE ++ R Sbjct: 59 ALGASLKKRGSKLILRR----GAAHTELARIARETGSRRIHATHAYEPWWKHSEE----R 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L + D + L P SI+N Y+V+TP+ + L+ ++ ++ P Sbjct: 111 LPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDHMPPTLPQAAPDAVPAPAS 170 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTS 243 ++ + P + + ++ + Y +RD PA TS Sbjct: 171 WPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWLDAIGDYKARRDYPAQPATS 230 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L G +SPR W+ + E GA S+ +EL WRE +L+ P Sbjct: 231 RLSPHLHFGEISPRALWHAIGERDDA-------GAESYRSELGWREHGINLVDQMPDYAD 283 Query: 304 GK--PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 AW +G TG+P++DA MR+L GWMHNR+RM+TASFL Sbjct: 284 RNGRELFDRFAWRTGADADRDFAAWTRGRTGYPVVDAGMRELWQTGWMHNRVRMVTASFL 343 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 VK LL+DWR GE +F LLD DL SN WQ+ A TG D+ + RI +P +Q +RF Sbjct: 344 VKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFSRIMSPLLQCERF-AM 402 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464 ++R +PEL ++ I A H ++ + YP P++ H+ Sbjct: 403 ADYVRAHVPELAHLSDAEIAASH---GRDSGAPGYPEPLIGHE 442 >gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] Length = 515 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 118/443 (26%), Positives = 187/443 (42%), Gaps = 26/443 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---- 57 K M+ L W RNDLR+TDN L AAC S +V+ VF P +R+ R+ Sbjct: 39 KNGETMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPY 96 Query: 58 -SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ S+L +++ L I H F + L + VT L R++ +E Sbjct: 97 RAGFLRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDE 152 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLR 175 + + L V L P + + + V+T FRK +++ Sbjct: 153 CLALDAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPE 212 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKVYY 229 P + P +P + F GE A L+++ E + Sbjct: 213 DTPARREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFL 272 Query: 230 YVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +R + +++ SP+L+ G LS RQ + +K ++ + + ELI Sbjct: 273 STYKRTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKRYEQEVEKNR--DTYWLVFELI 330 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR++++++ + I E+ +W W QG T I+A M++L Sbjct: 331 WRDYFKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLT 389 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWM NR R TAS+ +D+ DWR+G +F LLD D+ SN G W + ++ GND Sbjct: 390 GWMSNRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGNDPRN-- 447 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429 R FNP Q R+D G F R WL Sbjct: 448 RKFNPEHQASRYDASGKFRRLWL 470 >gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803] Length = 453 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 194/457 (42%), Gaps = 29/457 (6%) Query: 41 FIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 + P Q+ Q +S+F+ S+ + +SL + G + + Sbjct: 2 YCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLV----TTGLPEQVIP 57 Query: 96 SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 Q ++Y+R+ E+ ++ L K+L I L L ++Q Sbjct: 58 QIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDL 117 Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--------VTPSNIPRFFDYPFQAIDPM 207 + I+ + P+ L P P P+ + Sbjct: 118 PDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQ 177 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 A + +++ Y E R+ + +S+ SP+L++G LSPR + +K Sbjct: 178 GGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY 237 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + + + EL+WR+F+R + Y + + + + W +D + W Sbjct: 238 EQERVSND--STHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELW 294 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + G TG+P++DA MR+LN G+M NR R ASFL K+L +DWR G E+F S L+D D+ Sbjct: 295 RSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVC 354 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 SN G W + A GND+ FR FN Q +++DPQGT++RHWLPEL N+P IH P Sbjct: 355 SNWGNWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLL 413 Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 L ++YP P V+ ++ + Sbjct: 414 SATEQKQWGVQLGVDYPRPCVNFHQSVE-ARRKIEQM 449 >gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946] Length = 435 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 216/471 (45%), Gaps = 41/471 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR D+ ALY A + ++ + P S R+ + YA+ + Sbjct: 1 MNLVWHRADLRTHDHPALYQAAQS--GPLVGLVNLDPHILE--PTSPRRRAWFYANTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ +++G + E L + V ++F Y + RD E+ + Sbjct: 57 REAYARRGGTLLVR----YGTPWEVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + PPG +L Y VYTP+ K +A+ + + Sbjct: 113 --GRIHWCEGNHVQPPGRLLKPDGTPYTVYTPYAKRWW---GEAERLGEGLLPPGRFPAL 167 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 ++ + P+ P GE+ AL L F ++++ Y + RD QG S+LSPY Sbjct: 168 ERPDLELGQVPQEPSDVPLPPPGEEAALQALEAFLRDRLPTYHQTRDRLDGQGGSRLSPY 227 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 ++GVLSPR +R + GA W+ EL WR+F L+ P + + F Sbjct: 228 FTLGVLSPRLAVHRALHIGGE-------GARKWVAELAWRDFSADLLYHRPQMLH-QSFD 279 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P + + W D L +AWK G TG ++DAAMR+LN G+M NR RM A F VK L+ Sbjct: 280 PRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVAQFAVKLALLP 339 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ E++F ++LLDGD ASN GWQWA G D+ PYFR+FN Q + DP+G +++ W Sbjct: 340 WQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQHDPEGVWLKRW 399 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 LPE P Q P++D + A L K Sbjct: 400 LPEWGGPPVQ--------------------PVIDLEAARQRYLAAAARIAK 430 >gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo] Length = 540 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 173/444 (38%), Gaps = 30/444 (6%) Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + SL + + + + VT+L + E R Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKER 76 Query: 120 DKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + K + + ++S I+ + +A+I + Sbjct: 77 DAAIIKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSS 136 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKV 227 + + ++ Y +++ ++ GE AL L K + K Sbjct: 137 IVSQQMETCKVDIQENHDDMYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKA 196 Query: 228 YYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + +R + LSPYL G LS R + RL E + + S Sbjct: 197 WVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPL-SLYG 255 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 256 QLLWREFFYTAATNNPKFDRME-GNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQL 314 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GW+H+ R A FL + DL + W G F LLD D + N G W W + + Sbjct: 315 RQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFF 373 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456 +F + P G+R DP G +++ +LP+L P++YI+ P + + K + ++Y Sbjct: 374 QQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDY 433 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480 P P+V+H + + + +Q Sbjct: 434 PKPMVNHAETSRLNIERMKQIYQQ 457 >gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88] Length = 641 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 114/569 (20%), Positives = 181/569 (31%), Gaps = 102/569 (17%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W R DLR+ DN AL AA + + I +F P Q + + F+ Sbjct: 7 PTVIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRFLLECQND 66 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +S + + + T L + + RD+ + K Sbjct: 67 LSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122 Query: 126 RLQHRVIC---------KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR- 175 + D+ V G Q+ K + V A R Sbjct: 123 LANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAPERI 182 Query: 176 ---------------------------------SLPVPAIRLTGPVTPSNIPRFFDYPFQ 202 + GP +IP + Sbjct: 183 PDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQYNNIAGPKGDFSIPTLDELSID 242 Query: 203 AIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 P + Q T+ LSP+L G L Sbjct: 243 PSQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSL 302 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLN---ELIWREFYRHLMAFYPSVCMGKPFIPWT 311 S R+ W+ +++ K + N +L++RE + A V Sbjct: 303 SVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQTRGNKIV 362 Query: 312 EKIEWNKDSH---------------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + W+ S+ + WK+G TGFP IDA MRQL GW+H Sbjct: 363 RFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQLKNEGWIH 422 Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + V W G E F L+D + ASN G W W + T + Y R + Sbjct: 423 HLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFTQ-YNRCY 481 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------------LSLN-- 455 +P GK++DP+G FIRH++PEL + +YI+ P ++ + + Sbjct: 482 SPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVTGDGMVEKDEE 541 Query: 456 -----YPLPIVDHKKACHHTLNQYYAAKK 479 YP P+ D + + Q A + Sbjct: 542 TGLRAYPEPMFDFDERRQTCIAQMKEAYE 570 >gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens] Length = 529 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 106/503 (21%), Positives = 175/503 (34%), Gaps = 34/503 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VW R LR+ DN L A +++ +F+ P R + A + F+ SL + S Sbjct: 8 VWFRKCLRLHDNAPLVEAAKRG-GRLLPIFVLDPHFARPEFVGAPRYRFLLESLADLDAS 66 Query: 72 LSQKGIVFQYHQCSNFD------------------DSIEWLDSYCLQQRVTKLFYNRQYE 113 L ++G + D+I W + V + Sbjct: 67 LRKRGSRLCVVRGETEATLDGLFAGACDALPGVKVDAILWEEELVEPWGVARDARVAAAA 126 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + + P ++ + + Sbjct: 127 KARGVAASAVAGGHLLFDPREVLGACGGKAPTTMPAMVKAAAALGAVPAPLDPPATLPPP 186 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 LP ++ + P E K+ + + Sbjct: 187 PDGLPDSSVPTLEAMGYEAPPAAAFGVAGGESAGLARLEAALARDGGKWARAFEKPKTKS 246 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREF 290 T+ LSPYL G +S R RL + + + + E+ + Sbjct: 247 TKFDVDPSTTVLSPYLKFGCVSARLFRARLADVYAGGSHAQPPTSLLGQLYFREMAYANA 306 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +H AF S IPW + + L+AW+ G TG+P +DAAMRQL GW+H Sbjct: 307 LKHGAAFAASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIH 366 Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + DL + W G F LLD D A NN W A + S P+FR++ Sbjct: 367 HLARHAVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVY 426 Query: 410 NPT---IQGKRF--DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPL 458 +P Q D G ++ ++PEL +P +Y +AP + + YP Sbjct: 427 SPVPNHKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAPWTAPAAVLAAAGVVLGDTYPR 486 Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481 P+VDHK + ++ A++++ Sbjct: 487 PLVDHKVQSKDNIARFKEAQQRN 509 >gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus flavus NRRL3357] Length = 572 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 141/417 (33%), Positives = 211/417 (50%), Gaps = 18/417 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W ++DLR+ DN+AL A +IA++I +PE H S + +L Q Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L + I + D + + C + LF N +YE++E+RR+ L + Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252 Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I D+ ++PPG + + + Y VY+P+ ++ L+ Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312 Query: 187 PVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 F D + ++P GE L L F +EK Y + Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + Q TS LSPY + G LS R + K+ + L + + G SW++E+ WR+FY+ Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 H++ +P +CM K F P +EW ++ +AW +G TGFPI+DAAMRQ+ + WMHNR Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 RMI ASFL KDLL+DWR GE YFM L+DGD ASN+GGW + +STG D PYFRIF Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 549 >gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis] Length = 531 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 173/435 (39%), Gaps = 19/435 (4%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL + SL + + + + + + + E Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKECKFSTPTFEYDSEPFG 84 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RD ++ K + + ++S L + T R I + ++ R Sbjct: 85 KERDAVIMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRP 144 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + I F + ++P GE AL L + + K + +R Sbjct: 145 APSVTRQQMEGCNSLCIASGFHSEIKG-PSIWPGGETEALARLDRHLERKAWVANYERPR 203 Query: 237 PAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 + LSPYL G LS R + RLKE + + S +L+WREF+ Sbjct: 204 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPL-SLYGQLLWREFFY 262 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ Sbjct: 263 TAATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 321 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + DL W G + F LLD D + N G W W + + +F + P Sbjct: 322 ARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCP 380 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465 G+R DP G ++R +LP L P++YI+ P S + K + ++YP PIV+H + Sbjct: 381 VGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAE 440 Query: 466 ACHHTLNQYYAAKKQ 480 A + + +Q Sbjct: 441 ASRMNIERMKQTYQQ 455 >gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279] Length = 433 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 22/423 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ DN AL A + + + P + R+ + Y + + Sbjct: 1 MNLVWHRADLRLHDNPALAEALRT--GPAVGLVVLDPNILQNTT--PRRRAWFYQNTQAL 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +++ + +G + + E L + V ++F R RD+ + + L Sbjct: 57 REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + PG+I+ Y V+TP+ K A L Sbjct: 113 --GRLRWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWWA----APEPVLLEAPAHFPPFS 166 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + + P+ P GE AL L F ++K+ +Y + RD A +G S+LS Y Sbjct: 167 LPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGVSRLSYY 226 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 ++GVLSPR + + + GA W+NEL WR+F L+ P + + F Sbjct: 227 FTLGVLSPRLAARKALQVGGE-------GARKWVNELCWRDFSGDLLYHRPQMMT-QAFD 278 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 P E + WN DS + +AW G TG P++DA MR+L G++ NR RM+ A F VK L+ Sbjct: 279 PRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAVKLALLP 338 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ E F + LLDGD ASN GW WA G D+ PYFR+FN Q + DPQG +++ W Sbjct: 339 WQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQGLWLKRW 398 Query: 429 LPE 431 +PE Sbjct: 399 VPE 401 >gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa] Length = 484 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 203/443 (45%), Gaps = 24/443 (5%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ SL + +SL G + D +++ L + K+ +N Y+ Sbjct: 3 GRVSRWWLKQSLSHLDQSLKSLGAGLVMIKT---DSTLKALLECVNAVQAEKVVFNHLYD 59 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + RD ++++L I + L P I + + + + PF +Q ++ Sbjct: 60 PVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMKT 119 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 P I G V +I + + + G + L +F + Sbjct: 120 YSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVENN 179 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282 + +Y + R + TS LSPY+ G LS R+ + + + + I + A +L Sbjct: 180 LIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFFL 239 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + +RE+ R+L +P + +P + + WN D + +AW+ G TG+P++DA MR+ Sbjct: 240 KAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMRE 298 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GW+HN++R+I +SF VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D Sbjct: 299 LWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDG 358 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 R+ +P IQG ++D +G ++R WLPEL +PT++IH P + +L NY Sbjct: 359 HELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNY 418 Query: 457 PLPIVDHKKACH---HTLNQYYA 476 P PI+D A + + + Sbjct: 419 PKPIIDIDLAREQLTQAIFKMWE 441 >gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus] Length = 579 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 175/447 (39%), Gaps = 30/447 (6%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+ SL + SL + + + + VT+L + E Sbjct: 61 RRLFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFG 116 Query: 117 VRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 RD +++ + V + + L I+ Q + +A+I + Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPRKP 176 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCK 224 V + ++ Y +++ ++ GE AL L K + Sbjct: 177 VGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLE 236 Query: 225 EKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 K + +R + LSPYL G LS R + RL + + + S Sbjct: 237 RKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPPL-S 295 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +L+WREF+ P + P +I W+++ L W + TGFP IDA M Sbjct: 296 LFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEAKTGFPWIDAIM 354 Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 QL GW+H+ R A FL + DL V W G F LLD D + N G W W + + Sbjct: 355 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS- 413 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453 +F + P G+R DP G +IR +LP+L P++YI+ P + + K + Sbjct: 414 AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIG 473 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480 ++YP PIV+H + + + +Q Sbjct: 474 VDYPRPIVNHAETSRLNIERMKQIYQQ 500 >gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes] Length = 532 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 106/452 (23%), Positives = 176/452 (38%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + + + + VT+L + Sbjct: 4 PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYD 59 Query: 112 YEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E RD +++ + V + + L I+ Q + +A+I + Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219 V + ++ Y +++ ++ GE AL L Sbjct: 120 LPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179 Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 K + K + +R + LSPYL G LS R + RL + + + Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST 239 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P + P +I W+++ L W +G TGFP Sbjct: 240 PPL-SLFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPW 297 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 358 LSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP PIV+H + + + +Q Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448 >gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; Flags: Precursor gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri] Length = 546 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 118/492 (23%), Positives = 193/492 (39%), Gaps = 50/492 (10%) Query: 11 LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61 ++W RNDLR+ DN + A +SD +V+ V++ ++ + F Sbjct: 7 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI 114 + ++ SL G + D E + Q VT + Sbjct: 67 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 126 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQA 172 R++ + + P + + + V+TPFR + Sbjct: 127 ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVR 186 Query: 173 D---------------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 D P + + R D + F G Sbjct: 187 DVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGG 246 Query: 212 EQNALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 E NAL ++ + E Y E R+ + +++L+P+L++G +SPR + ++ Sbjct: 247 ESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYES 306 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + + + ELIWR+F++ + + W +D +L+AWK Sbjct: 307 ERVENK--STYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEKILKAWKT 363 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+P+IDA MR+L G+M NR R AS+L D +DWR G ++F LLD D ASN Sbjct: 364 GTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLLDYDTASN 423 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448 G W A+ G R FN Q K +DP G +I+ W+ EL VP YI P+ Sbjct: 424 WGNW--CAAAGMTGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIADPNQAPR 480 Query: 449 --KNDLSLNYPL 458 ++ + LNYP Sbjct: 481 ELRDRIGLNYPN 492 >gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Pseudoalteromonas atlantica T6c] Length = 445 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 17/425 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 + W R+DLR+ DN AL A D +++ VFI P ++ + ++ F+ S Sbjct: 12 GIFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQS 70 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q+ L ++G + +++E LD+ + + E ++ + ++ Sbjct: 71 LSELQRHLQEQGQQLFVLE----GETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRVK 126 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + S+ P + L ++ + +++L A P Sbjct: 127 QGNPNTLFIQENGHSLFQP--ATLPFEIEYLPASFTPFRKRVEDLQVAVALPAPTALPPA 184 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243 S+ + A F + Y + R+ +S Sbjct: 185 PDLAWLSSKNVNPPKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYKQTRNGLDGWDYSS 244 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L+ G LS RQ + L+ + + EL+WRE+++ + Y S Sbjct: 245 KLSPWLANGCLSVRQVFTELRRYESEYEKND--STYWLYFELLWREYFQWHLFKYQSKLF 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 T + W QG T +PI++A M+QLN G+M NR R + AS LV Sbjct: 303 QFSGTQDTRPLTTFVALRFAM-WCQGETPYPIVNACMKQLNHTGYMSNRGRQLVASCLVN 361 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L VDWR G YF QL+D D+ASN G WQ+ + G D + R F+ Q +++DP G Sbjct: 362 ELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGHRR-FDLAKQAQQYDPNGE 420 Query: 424 FIRHW 428 F+R W Sbjct: 421 FVRQW 425 >gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 440 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 25/430 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 L W DLR+ DN +L AA + ++ +++ P + + + + F++ SL Sbjct: 4 LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++SL G F + + + ++ +R E + + ++ Sbjct: 62 MALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKD 117 Query: 126 RLQHRVICKSFDDSVLLPP------GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 RL V + S+ + + Q K + L L +LP Sbjct: 118 RLPKAVFQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPP 177 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PA 238 P +P Q + A + + Y E R+ Sbjct: 178 PPGFPEDNRGDCPPIPEPVHPLQFMGGEAAG---LARLQEFLYGNHSIDRYKETRNALDT 234 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +S+ SP+L+ G LS R+ + E + + EL+WRE++ + Sbjct: 235 WDASSKFSPWLANGCLSVREVAETITEY--EASETKNESTYWLWFELLWREYFYWYALKH 292 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + + H +AW QG T +PI++AAM QL G+M NR R + A Sbjct: 293 GANLFRRDGVQRKRRH-GTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQLVA 351 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S + +L +DWR G +F QL+D D+ SN G WQ+ A G D R FN Q +++ Sbjct: 352 SCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQQY 410 Query: 419 DPQGTFIRHW 428 DP GTFI W Sbjct: 411 DPTGTFIDRW 420 >gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens] Length = 532 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 106/452 (23%), Positives = 176/452 (38%), Gaps = 30/452 (6%) Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + F+ SL + SL + + + + VT+L + Sbjct: 4 PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVR----GQPADVFPRLFKEWGVTRLTFEYD 59 Query: 112 YEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E RD +++ + V + + L I+ Q + +A+I + Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHIL 219 V + ++ Y +++ ++ GE AL L Sbjct: 120 LPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179 Query: 220 RKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 K + K + +R + LSPYL G LS R + RL + + + Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST 239 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 S +L+WREF+ P + P +I W+++ L W +G TGFP Sbjct: 240 PPL-SLFGQLLWREFFYTAATNNPRFDRME-GNPICIQIPWDRNPEALAKWAEGKTGFPW 297 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL V W G F LLD D + N G W W Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP+L P++YI+ P + + Sbjct: 358 LSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP PIV+H + + + +Q Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448 >gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans morsitans] Length = 536 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 109/513 (21%), Positives = 178/513 (34%), Gaps = 43/513 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MSV+++W R+ LR+ DN AL A ++ +FI E + F+ S Sbjct: 1 MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + + Q + + KL + E RRD ++ Sbjct: 61 LRDLDDQFRCQRGRLYTFQ----GNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVK 116 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 I S L + T ++ R + Sbjct: 117 VLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIGLPPRPAENANWKG 176 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE------------------- 225 + + F I K Sbjct: 177 VDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEG 236 Query: 226 ----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275 + YY Q + ++ +SP+L G LS R+ + + + F D+ Sbjct: 237 EAFKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQI 296 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 +LIWRE++ + P + + L+ WK G TGFP+ Sbjct: 297 MSGAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAPVNDEQLENWKLGKTGFPL 356 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +DAAMRQL GW+H+ LR A+FL + L +W G ++F+ LLD D + G W W Sbjct: 357 VDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVCAGNWMW 416 Query: 395 AASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447 +S+ + + + P KR DP G +I+ ++PEL +VP +YIH P Sbjct: 417 VSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMPLSEQKR 476 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + +YP I+D KA + ++ Sbjct: 477 SKCIIGEHYPKRIIDFVKAAESNMTAMRNLRQD 509 >gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15] Length = 614 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 101/520 (19%), Positives = 171/520 (32%), Gaps = 62/520 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + +F P + + ++ + Sbjct: 7 IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDLSA 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S++ + + +VT L + + + +RD++++K Q Sbjct: 67 SITNLNPRSKLFVLR----EAPQSLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAAQ 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I+ + + + + A+ G Sbjct: 123 AAGVKVITRYGRTLWDSDAIVKANGGEPTMSMARLRTVGAKVGSIPRPIPAPKALPDPGE 182 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + D G++ A + + +E+ + +P Sbjct: 183 MPLDFNLDLPDVGQDYNAKWRSEGKEKAYGAIAGPNGDFAIETLEE-----LGYPPATTP 237 Query: 248 YLSIGVLSPRQCWNRLK------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 Y L+ R+ ++ S +L++R+ Y A Sbjct: 238 YKGGESLALRELDAIIENQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIGPC 297 Query: 302 CMGKPFIPWTEKIEWNKDSH-------------------------LLQAWKQGYTGFPII 336 I W+ SH + W+ G TGFP I Sbjct: 298 FSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPWI 357 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DA MRQL GW+H+ R A FL + V W G + F LLD + A N G WQW Sbjct: 358 DALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQWL 417 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450 + T S YFR ++P GK++DP GTFIR W+PEL ++ +YI+ P + Sbjct: 418 SCTAFFSQ-YFRCYSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRAG 476 Query: 451 ------------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 S Y P+ D + + A Sbjct: 477 VVMVSEGGVGGGGASGTYFTPMFDFDERRRVCMRLMKQAY 516 >gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX] Length = 419 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 182/455 (40%), Gaps = 38/455 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS +V DLR++D+ AL+AA +D +V+ +F+ P R + + ++ +L Sbjct: 1 MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVRVS--ARNRIAYLLEALA 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ L ++G Q +++ + ++ + VRR + L + Sbjct: 58 ELRGLLRERGGELVVRQGDTVAETV----RIVAEAGAQAVYLSADVSAAAVRRARQLTEA 113 Query: 127 LQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ ++PPG++ Y+++TP+ A ++ + + Sbjct: 114 VRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVRLPEG 173 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P + P G + S+ Sbjct: 174 LVPGPLPGAELIRLGTGVLAPQREQGGPRTARERIRAWL------------AQPNQDSRF 221 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +L G LSP + +E L+ + + ++++ + P + Sbjct: 222 GCHLHFGCLSPLEVALVAREHPRGALLLRQLALRDFHHQVLQAFPRLPRADYRPRPIQWR 281 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 D AW G TG PI+DA MRQL G++ R+RM+TA++L + L Sbjct: 282 D------------DDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYLTQVL 329 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 + W+ G ++F S L+DGD+A+N G WQ A TG P RI N Q +R+DP G ++ Sbjct: 330 RIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPSGDYV 388 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 R ++PEL ++ +H P YP P+ Sbjct: 389 RRFVPELRSISGSAVHHP-----PVPRPGGYPPPL 418 >gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica] Length = 525 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 113/518 (21%), Positives = 201/518 (38%), Gaps = 45/518 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSH 59 M+ L W R LR+ DN+ L AA +S+A V V+ E R I + Sbjct: 1 MERNLTRHRTLHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIR 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ SL + ++L + G + ++ + ++C + +T++ Y R E+ + Sbjct: 60 FLLESLTDLDENLRKIGTRLFVLR----GNARTAIKTFCREYEITQMTYMRDAEVFYRQL 115 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + + + R I +S L P I++ + ++I +L L + Sbjct: 116 EAEILEEVNRREIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSLDVPALPAPT 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYP----------FQAIDPMFPIGE-------QNALHILRK 221 V A Y +P GE + + Sbjct: 176 VTAEMFKSCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTL 235 Query: 222 FCKEKVYYYVEQRDIPA------------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + + + + T+ LSPY+++G +SPR W+ K Sbjct: 236 YEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEK 295 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + + E + Y I W++ + + ++ +KQG Sbjct: 296 MRTTVQ--GQMIYREFFYTVAYTVNNFTRIEGNRICKDIKWSDPKTNERAAEWIEKFKQG 353 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388 TG+P IDAA+RQ+ T GW+ + R ASFL + W +G++ F LLD D A N Sbjct: 354 MTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLDADYALN 413 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL- 447 G + W + + + +P +++D G+FIR + PEL N+PTQYI AP Sbjct: 414 AGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICAPWKAPQ 473 Query: 448 -----DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + ++YP P+++ LN+ A +Q Sbjct: 474 DVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511 >gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus cellulolyticus 11B] Length = 497 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 129/484 (26%), Positives = 204/484 (42%), Gaps = 46/484 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ D+ AL AA + A ++ +F+ P G + F+ + L ++ Sbjct: 34 VYWFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPR--AGRGAGPNRWQFLASCLEELD 91 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128 + L + + + + + + + + RRD+++ +RL Sbjct: 92 RQLGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAA 151 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D + PG + Y+V++ F +A + V+A L Sbjct: 152 EDRRLLLLDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAPYERPAARFDALVSDG 211 Query: 189 TPSNIPRFFDYPFQAIDPMFP------------IGEQNALHILRKFCKEKVYYYVEQRDI 236 +++ + + GE+ A+ L +FC+ + Y RD Sbjct: 212 EATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRHRDR 271 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P + GTS+LS L G L PR +L EL WREF+ ++ Sbjct: 272 PDMAGTSRLSADLHFGTLHPRTV------RDAARKTVEGPALDRFLAELAWREFFADVLW 325 Query: 297 FYPSVCMGKP--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + + AW +G TG+ ++DA MRQL + GWMHNR+R Sbjct: 326 HRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHNRVR 385 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M++ASFLVKDL +DWR G +F+ L+DGD+ASNN WQW A G D+ PY RIFNP Q Sbjct: 386 MVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNPDRQ 445 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 +RFDP G + R + ++P + IV+HK L ++ Sbjct: 446 AERFDPDGAYRRRYC---ADLPARL-------------------SIVNHKAERAEALTRW 483 Query: 475 YAAK 478 AAK Sbjct: 484 AAAK 487 >gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3] Length = 277 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 112/277 (40%), Positives = 155/277 (55%), Gaps = 10/277 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + GE+ A LR F ++++ Y E RD PA TS LSP+L++G +SP + W+ + Sbjct: 2 WTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLS 61 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 L + E+ WR+F HL+A +P + ++ EW AW Sbjct: 62 KHLPAA---DIVHFRKEIAWRDFSYHLLAHFPRLATANW-EDRFDRFEWGSAEEDFNAWS 117 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+PI+DA MRQL GWMHNR+RMI ASFL+KDL+VDWR GE +F L+D D A+ Sbjct: 118 RGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPAN 177 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 N WQW A +G D+ P+FR+FNP +QG++FDP G F+R +PEL + +YIH P Sbjct: 178 NAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAP 237 Query: 448 ------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YP P+VDH A L Y A + Sbjct: 238 KSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIR 274 >gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL J1-208] Length = 246 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 113/248 (45%), Positives = 148/248 (59%), Gaps = 13/248 (5%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + TS LS YL G +S R W L+E G ++ EL WR+ + +++ Sbjct: 1 MDKTSHLSRYLRTGEISIRTIWQALQETEA------TEGRATFEKELCWRD-FYNMIYVS 53 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +P IEW + +AW++G TGFP++DAAMRQL GWMHNRLRMITA Sbjct: 54 FPNQKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITA 113 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SFL KDLL+DWR GE+YF L+D D ASN GGWQWAAST D+VPYFRIFNPT Q ++F Sbjct: 114 SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKF 173 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472 DP G FIR ++ EL N+P +YIH P + L +YP P+VDHK+ + Sbjct: 174 DPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIA 233 Query: 473 QYYAAKKQ 480 +Y +K+ Sbjct: 234 RYEFSKEH 241 >gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM 44728] Length = 436 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 117/425 (27%), Positives = 178/425 (41%), Gaps = 29/425 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V DLRI DN AL A ++D V+ +++A + Q F+ SL Sbjct: 37 MRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVAD----DSPPLPPNQRRFLVESLT 91 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++SL + G + D +E C + Y R + L + Sbjct: 92 DLRESLRRLGGDLLVRR----GDPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAEA 147 Query: 127 LQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + +++ P YKV+TP+ ++ + + P Sbjct: 148 AEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHE---APQAIR 204 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + P P + G + A ++ Y D A T++ Sbjct: 205 LPADVTGDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWIDREPDYPAIHDDLAADDTTR 264 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL G +SP + + +L WR+FY ++ +P + Sbjct: 265 LSGYLRFGCVSPLVVAAD------------PRTPEALVRQLCWRDFYHQVLHGFPRLATD 312 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + W D L+AW+ G TG P++DA MRQL T GWMHNR RM+ AS+L KD Sbjct: 313 NYRPGARD--AWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVAASYLTKD 370 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L +DWR G +F L+D D+A+N G WQW A TGNDS PY R FNP Q +R+DP+ + Sbjct: 371 LGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQRYDPRHEY 429 Query: 425 IRHWL 429 WL Sbjct: 430 RDRWL 434 >gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8] gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Marinobacter aquaeolei VT8] Length = 440 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 102/426 (23%), Positives = 177/426 (41%), Gaps = 18/426 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65 L W DLR+ DN AL AA + ++ VF+ P ++++ + + F++ SL Sbjct: 4 LYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++SL G + + L + V +L +R E + + L+ Sbjct: 62 MALERSLRPMGQRLHI----AWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALKT 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 RL + + + A ++ LR V A+ Sbjct: 118 RLPEVTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALPPP 177 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRDI-PAIQGT 242 N + P F GE+ A F + ++ Y E R+ + Sbjct: 178 PGFPEDNRGQCPPIPEPIHRSPFTGGEEAGLAQLQAFVFGQHRIANYKETRNALDDWGSS 237 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+ SP+L+ G LS R+ +++ + + EL+WRE++ + Sbjct: 238 SKFSPWLANGCLSAREVVAAIEQY--ERQHTRNDSTYWLWFELLWREYFYWYALKHGGRL 295 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + ++ H +AW +G T +PI++AAM QL G++ NR R + AS L+ Sbjct: 296 FSRDGV-QRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLRETGYISNRARQLVASCLI 354 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q +++DP+ Sbjct: 355 NELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG-LRQFNLDKQAQQYDPEE 413 Query: 423 TFIRHW 428 F+ W Sbjct: 414 AFVHRW 419 >gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans] Length = 709 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 99/549 (18%), Positives = 175/549 (31%), Gaps = 86/549 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + ++ P + + + ++ + K Sbjct: 53 IYWFRTDLRLHDSPALKAALDLKPDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQKDLSK 112 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + ++T L + + + RD+ + + + Sbjct: 113 SITKVNPQSKLFVIR----EAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQVMELAK 168 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + P ++ + +A + + Q ++ G Sbjct: 169 TAGVEVVVKTGRTLYDPDELVRQNHGKPTMSINQVQAAGKKIGQIPRPIPAPKSLPGPGK 228 Query: 188 VTPSNIPRFFDYPFQAIDPMF------------PIGEQNALHIL---------------- 219 V D P G+ + Sbjct: 229 VDFDFHQEKPSNSPDINDAQRNTDEASYSSLAGPNGDFAVPTMKELGLKLATSTHRGGET 288 Query: 220 -----------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + Q T+ LSP+L G LS R+ + R+++ Sbjct: 289 LALEALEKIIANEEYTATFEKPKTAPTAFEPQATTLLSPHLHFGSLSCREFYWRVQDVVD 348 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 K S +L++R+ Y A P I W+ S Sbjct: 349 RFKGKASQPPTSLTGQLLFRDMYFGAQAALGYSFSQTYNNPQCRFIPWHLPSKIDIKSSM 408 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 + WK+G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 409 TTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQLKREGWIHHLGRHAVACFLTRGGCY 468 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW + T + +FR ++P +++D +G F++ Sbjct: 469 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FFRCYSPIAFPQKWDKEGEFVK 527 Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDL-----------------SLNYPLPIVDHKKACHH 469 ++PEL +YI+ P + YP P+ D Sbjct: 528 RYVPELAKFDKKYIYEPWKAPIADQKKWGCRIEGDGLSVAKGEGETYPKPMFDFPTRRDI 587 Query: 470 TLNQYYAAK 478 L+ A Sbjct: 588 CLDGMKNAY 596 >gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] Length = 616 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 103/502 (20%), Positives = 179/502 (35%), Gaps = 45/502 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69 +VW R LR D AL A D V + + P + G++ + F + ++ + Sbjct: 48 VVWHRKHLRTADQLALTRAVSGGDV-VCPLLVFDPAFYGDGGLACDARIRFFHEAVASLD 106 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--------------------------- 102 + + + + L + Sbjct: 107 RLYAAAPAPTVTRTAEAPRERLAATTPLSLNETREDDRTAEDSLSGASSPGLTIGYGSPP 166 Query: 103 -VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 V + F N+ + I + + + + +S+ G L + + Sbjct: 167 TVLQRFANKGWTILTMATPTSRYGKRRDDRVRDVCGNSIEFISGDGLVRGQEWSRTNWQT 226 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 N + + + + P G + Sbjct: 227 HVETWLNEAPHTPAWSTADTTQFVLETGITPAAIDAAFDISPSKTLVPTGTHRRAAERLR 286 Query: 222 FCKEKVYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 E+++ Y P + +S LSPYL+ G+LS RQ + + E+ + G Sbjct: 287 SFVERIHSYPGNISAPQDAREASSGLSPYLNFGLLSVRQVYQSVSEQAPE-----CRGRQ 341 Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 + + L+W Y + +P + + + D L+QAWK G TGFP++DAA Sbjct: 342 MFTDRLVWNLHYNQKLVDWPGWTDTAVNPVFEDFNRDHHDPELVQAWKGGETGFPMVDAA 401 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR L GW++ R+R + ASF V L W IG +++ L+D D+ N WQ + G Sbjct: 402 MRCLRQTGWLNFRMRAMCASFFVHILQQPWWIGADWYHHHLIDSDVGINYTQWQ--SQAG 459 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453 P R++NP Q + DP G +I WLPEL +P ++ P + Sbjct: 460 TIGKPVQRVYNPRKQVRDHDPDGDWICRWLPELAPLPNTFLDRPERTPLAVQTDCGVTIG 519 Query: 454 LNYPLPIVDHKKACHHTLNQYY 475 +YP P+VD ++Y Sbjct: 520 DDYPRPVVDFDARREAFWSRYE 541 >gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii ATCC 33406] gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Cytophaga hutchinsonii ATCC 33406] Length = 434 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 110/436 (25%), Positives = 180/436 (41%), Gaps = 21/436 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFI 61 M +VW + DLR+ DN+ L A SD ++I V+ + ++ ++ F+ Sbjct: 1 MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTGNFRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + +L + G + L Q K+F R+ E + + Sbjct: 60 LESLNDLDTNLRKLGSGLIVVR----GKPETELYKIVKQYEAFKVFAKREVAYEEQQTEA 115 Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQAD 173 +EK + +SF S L + + +V+T FRK + + A Sbjct: 116 RVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEKESSIRSVFQKPAH 175 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++S +P +RL P D L + +Y + Sbjct: 176 IKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQLISHYKNTR 235 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + +++ SP+L++G LSPR+ + LK+ + + + EL+WR+++R Sbjct: 236 DGMIGSDYSTKFSPWLALGCLSPREIYTELKKY--ESRFSANESTYWLIFELLWRDYFRF 293 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 +M + I + +D+ +L W G TG IDA M +L G+M NR Sbjct: 294 MMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTHTGFMSNRG 353 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R AS+L DL +DWR G YF QL+D D+ SN G W + A GND R FN Sbjct: 354 RQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK-RNFNIEK 412 Query: 414 QGKRFDPQGTFIRHWL 429 Q + +DP+ F WL Sbjct: 413 QAEEYDPKKLFRNLWL 428 >gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri] Length = 1646 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 91/562 (16%), Positives = 163/562 (29%), Gaps = 87/562 (15%) Query: 2 KATTAMSVH----------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 AMSV LVW R LR+ DN AL ++ A VF+ P + Sbjct: 1083 SRRGAMSVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPS 1141 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 + A + F+ SL + L +G + L C + RV + + Sbjct: 1142 RVGANRMRFLLQSLRDLDAQLRARGSSLLVLH----GEPRVVLPRACKKWRVDSVTWEHD 1197 Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 E RD + L + V C + L +L ++ + Sbjct: 1198 IEPYAKIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMG 1257 Query: 171 QADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQAIDPMFPIGEQNALH------ 217 + + + + + + P P+G+ Sbjct: 1258 APNAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGET 1317 Query: 218 -----ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + +++ E+ LS SP + ++ Sbjct: 1318 EGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTS 1377 Query: 273 KPKSGAF--------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 ++ + + H + GK P T + Sbjct: 1378 GAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYY 1437 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNR----LRMIT--------ASFLVKDLLVDWRIG 372 G F ++ I W +R A+ Sbjct: 1438 LVAAGTKNFDKMEGNAIC-RQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHL 1496 Query: 373 EEYFMSQLL----------------DGD-----LASNNGGWQWAASTGNDSVPYFRIFNP 411 + ++ L D D A NNG W W + + YFR+++P Sbjct: 1497 ARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQ-YFRVYSP 1555 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKK 465 K++D G ++RH+LP L N+P++Y++ P + ++YP PIVDH Sbjct: 1556 IAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSA 1615 Query: 466 ACHHTLN----QYYAAKKQSLL 483 A ++ Y A K + + Sbjct: 1616 ASKRCVDDIATAYAAHKDANAV 1637 >gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17] Length = 441 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 97/429 (22%), Positives = 175/429 (40%), Gaps = 23/429 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 L W DLR+ DN AL AA + ++ V++ P ++ + + F++ SL Sbjct: 4 LYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++SL G + D + + ++++ +RQ E + + L+ Sbjct: 62 IGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQD 117 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +L + + S+L LQ + LI+ L +P +++ Sbjct: 118 KLPKIAFTQYETLGLFTE--SLLPMPLQDLPTTFSQFRKLIEKKGDRGPSRLRIPTLKML 175 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH-----ILRKFCKEKVYYYVEQRDI-PAI 239 P + P + Y E R+ Sbjct: 176 PPAPGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNALDDW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +S+ SP+L+ G LS R+ + + + + E++WRE++ + Sbjct: 236 NSSSKFSPWLAHGCLSAREVADSI--SLYEQQHTSNESTYWLWFEVLWREYFYWYALRHG 293 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 S + + ++ H +AW +G T +P+++AAM QL G++ NR R + AS Sbjct: 294 SELFRRDGV-QGKRQSVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYISNRSRQLVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 + +L +DWR G +F QL+D D+ASN G WQ+ A G D R FN Q +++D Sbjct: 353 CFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRG-LRRFNLDKQAQQYD 411 Query: 420 PQGTFIRHW 428 P GTF+ W Sbjct: 412 PNGTFVERW 420 >gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54] Length = 277 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 136/278 (48%), Positives = 177/278 (63%), Gaps = 3/278 (1%) Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 AI ++P GE A L F + Y ++RD P++ TS LSPYL+ GVLSP Q Sbjct: 2 DAIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQALR 61 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 L K+GA +W+NEL+WREFY+HL+A P++ M +P P T + W Sbjct: 62 AALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAPD 121 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L+AW+QG TG PI+DAAMRQL +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+ Sbjct: 122 DLRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHLV 181 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 DGDLA+NNGGWQW+ASTG DSVPYFR+FNP Q ++FDP+G F+R WLPEL ++ IH Sbjct: 182 DGDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAIH 241 Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P YP PIVD ++ L + K Sbjct: 242 DPSPMERAA---AGYPAPIVDLPQSRLRALEAFGNLPK 276 >gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 435 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 196/467 (41%), Gaps = 51/467 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +V DLR+ D+ AL AA + VF+ P S+ Sbjct: 3 SATIVLFTQDLRVHDHPALAAAVER-PGPTLPVFVLDPAVAG-------------RSVRN 48 Query: 68 VQKSLS-----------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 L+ ++G + D++ + + + Sbjct: 49 RAALLADALADLRAALRERGADLVLLR----GDTVREVAALARASGADTVHVTDGVSSLA 104 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RR + L + ++F ++PPG + YKV+TP+ KA + + Sbjct: 105 ARRARRLRA---TGLTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAWEAAAWRDPVAP 161 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-D 235 + L V P +P A+ P G + A R D Sbjct: 162 --PDRVVLPEGVRPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHD 219 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LS L +G LSP + L P +G +++ +L WR+F+ + Sbjct: 220 DLPGAATSHLSADLRLGCLSPLEA---------ALAASPLAGGEAFVRQLAWRDFHHQVT 270 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 A +P+V + + E AWK+G TG P++DA MRQL G++HNR RM Sbjct: 271 AAFPAVNVRDYRPRDRKWREDPDALD---AWKRGRTGVPVVDAGMRQLLREGFVHNRARM 327 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 ITA+FL + L V WR G ++F + L+DGD+A+N G WQW A TGND+ P R FNP Q Sbjct: 328 ITAAFLTRTLRVHWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRP-NRAFNPLRQA 386 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462 +RFDP+G ++R +LPEL ++P H P + YP PI D Sbjct: 387 RRFDPEGVYVRRYLPELADLPGGRAHTPWR---EEHPPPGYPAPIAD 430 >gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera] Length = 633 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 112/485 (23%), Positives = 169/485 (34%), Gaps = 62/485 (12%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60 L+W R LRI DN AL A S+ V VF+ P + F Sbjct: 154 SLMWFRKGLRIHDNPALQHAAMESN-CVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 212 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL+ + SL Q G + + I+ L N Sbjct: 213 LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKK------------NYASAAGIEVFS 260 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + I + L S L A Q +P L D+ + + Sbjct: 261 PVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWASSPLSTTLSWLPPVGDVGTCEIS 320 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + I + PF+ + ++ I K Sbjct: 321 NVPTVKELGYEEIGQDELTPFKGGESE--ALKRLRESIRDKDWVANFEKPKGDPSAFLKP 378 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 T+ LSPYL G LS R + L + + ++ + S S + +L+WR+F+ + P+ Sbjct: 379 ATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPVSLVGQLLWRDFFYTVGFGTPN 437 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K ++I WN D LL AW++ TG+P IDA M QL GWMH+ R A F Sbjct: 438 FDRMK-GNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 496 Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + DL V W G + F L+D D A NNG W W + + P Sbjct: 497 LTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQP--------------- 541 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473 ++P +YI+ P + K + +YP P+V H A + Sbjct: 542 --------------DMPKEYIYEPWTAPPSIQXKAKCIIGKDYPKPVVCHDSAXKECKRK 587 Query: 474 YYAAK 478 A Sbjct: 588 LAEAY 592 >gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12] Length = 433 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 201/467 (43%), Gaps = 40/467 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L DLRI DN A AC +S +++ ++I + ++ F+ ++L V Sbjct: 6 LFLFYRDLRIKDNTAFIKACEDSK-EIVPLYILERHNFNKY-----SFEFVISALGYVNF 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L++ G + +++ E+L F + + + EK L++ Sbjct: 60 ELNKLGSFLYLVERGFNEETFEFLREKI-------GFDAIYLSKDYLWSFEEKEKLLRNF 112 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 K + + + + KV+TPF K L + + + Sbjct: 113 CREKGIELRFFEGNFLVSPNLISQTKVFTPFFKKWSAYLGEIRRKDFNFSKL-------- 164 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 N P F+ + + ++ Y E+RD+ GTS+LS Y++ Sbjct: 165 -NTPILELSKFEDFEFSKKVRLDLIEWGFKRLESFDFDVYDEKRDLLYCDGTSKLSAYIN 223 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 GV+S + ++K +L EL +REF+ H+ +P F Sbjct: 224 YGVISIYDVYEKVKNSKSS----------QFLRELAFREFWYHIRMHFPE-TRNLEFQEK 272 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T IEW ++ ++ TG+PI+DA +R L T GW+HNRLRMI ASF K LL DWR Sbjct: 273 TRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDWR 332 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 IGEE+F L+D D N WQW+AS G D P RIFNP IQ +FDP FI+ +LP Sbjct: 333 IGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYLP 391 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 EL + + IH P + K Y P+VD + +Y Sbjct: 392 ELKDEDCRKIHDPLKYKLK------YYTPMVDFYAQKELAIRKYKKI 432 >gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis M23590] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 145/476 (30%), Positives = 221/476 (46%), Gaps = 26/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LV L R+ N +++ A + + P + + + F + ++ Sbjct: 1 MNIALV-LNRVFRLEQNPMFEY-LNHNQADIERCYCVIPLEL-FEDEAPLKRTFYHQAVT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q + L + GI + F E + + N ++ Sbjct: 58 QFIQQLIEIGIKPFVFPYTAFASFCEQ-----KEIDTVVFPSDIMSFHNCECDILHVKSE 112 Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +Q + I + + P LN Q YKV+T F KA L Q + ++ Sbjct: 113 IQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK-- 170 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 I + + + IGE + + F + +Y R+ TSQL Sbjct: 171 -----QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQL 225 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G L + +L E + D + +++ EL++REFY LM +YP Sbjct: 226 SIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAH-T 280 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 F + I W+++ AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K+L Sbjct: 281 SFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKEL 340 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DW GE YF + L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD +G +I Sbjct: 341 FIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGLYI 400 Query: 426 RHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYA 476 + +LP+ NVP Y+H P DL NYP PIVDH++A H + Q+ Sbjct: 401 KTYLPQWANVPASYVHEPWKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQFKK 456 >gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens] Length = 487 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 143/509 (28%), Positives = 207/509 (40%), Gaps = 65/509 (12%) Query: 7 MSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQS 58 MS LVW R+DLR+ D++AL AA +D +VIAV+I E + Sbjct: 1 MSTSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIRETRDEEGLGPRPLGGACR 58 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 + + SL + + LS GI + + + + VT + + R+Y Sbjct: 59 WWAHESLTVLHEELSDLGIPLLF----AAGRAEKIIVQLASSLGVTAVRWTRRYASASRA 114 Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------- 166 D ++ L + S ++L+ P + + YKV+TPF KA+ Sbjct: 115 LDGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDVGDVLPKP 174 Query: 167 -------QNLVQADLRSLPVPAIRLTGPVTPSNIPRF-------FDYPFQAIDPMFPIGE 212 Q L+ V + G + + + I + G Sbjct: 175 QAQSPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAGHWSPGL 234 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + A L Y + TS+LSP L G LSPRQ + Sbjct: 235 RAAEDQLDDLSAIIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAAR----TTSS 290 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + +W+ +L WREF HL YP P P + D L W+ G TG Sbjct: 291 LTQDDRAAWIRQLYWREFSWHLTYHYPH-IDSAPIRPEFHNFPYEDDDDALTHWRAGTTG 349 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P+IDA M QL GWMHNR+RM+TASFL K+LL W GE++F L+D D A+N W Sbjct: 350 YPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADEANNPVSW 409 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452 QW A +G D+ PYFR+FNP Q +RFDP +I WL L Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWL------------PYTPATAPPPL 457 Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 VD +++ L+ Y K +S Sbjct: 458 --------VDLRQSRQAALSAYDHMKNRS 478 >gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001] Length = 628 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 111/554 (20%), Positives = 179/554 (32%), Gaps = 86/554 (15%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M+ + W R DLR+ D+ AL AA A + +F P + + F+ Sbjct: 1 MATGPRVIYWFRTDLRLHDSPALAAALALDPAVLWPIFTWDPHYVYRARGGLNRWQFLLD 60 Query: 64 SLLQVQKSLSQKGIV--FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + +S+++ + +VT L + + + RD+ Sbjct: 61 CQNDLSESITKLNSRSKLFVLREG----PQTLFPKLFKAWKVTHLVFEKDTDAYARERDE 116 Query: 122 LLEKR---------------LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 ++ + L + S L A A Sbjct: 117 VVMRAASEAGVEVIVKSGRTLWDSDAVVAKHGGKPTMSISQLQTAGAKVGPIAKPIPAPQ 176 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 ++ T P + D + I + L Sbjct: 177 SLPNPGEMPVDFGQTPPETEPDFNAEQRTEGDAAYAKIAGPEGDFAIETMEELGFPPAST 236 Query: 227 VYYYVEQRDIPA-------------------------IQGTSQLSPYLSIGVLSPRQCWN 261 + E R + Q T+ +SP+L G LS R+ + Sbjct: 237 PHRGGETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYW 296 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN---- 317 R++ S L +L++R+ Y A P+ I W+ Sbjct: 297 RVRAVVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSK 356 Query: 318 -----------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + WK G TGFP IDA MRQL GW+H+ R A F Sbjct: 357 VDAKTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACF 416 Query: 361 LVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 L + +DW G E F LLD + A N G WQW + T S YFR ++P G+++D Sbjct: 417 LTRGGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWD 475 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--------------YPLPIVDHKK 465 QG ++R W+PEL ++ +YI+ P + YP P+ D + Sbjct: 476 KQGAYVRRWVPELKDLDAKYIYEPWKAPLPDQKKAGVRVTGRGETQERGVYPKPMFDFNE 535 Query: 466 ACHHTLNQYYAAKK 479 L A + Sbjct: 536 RRTACLAAMKKAYE 549 >gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299] gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299] Length = 450 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 186/459 (40%), Gaps = 17/459 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A F+ P++ + ++++ +L +Q Sbjct: 1 VVWFRQDLRVRDNPALHAAARTG-RPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59 Query: 71 SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL + G S+ S + L + + ++ NR YE ++ RD+ E++ Sbjct: 60 SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + G + V+ LR Sbjct: 120 A----ELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCARLGEPPPPLP 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P + +A G Q+ + + +R ++ T+++SPY Sbjct: 176 PPPTMRVRLPADKRARSYTEHGGVQSNPGNGQSNGQSNAPKASTERFRADVRTTARISPY 235 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 + G LS R+ ++ K V A +L L WR+ + +P +C + Sbjct: 236 VRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPRLCDEP--L 293 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +W AW+ G TG+P++DA MR+L G++ N +R + A FL++ L VD Sbjct: 294 RPQYATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGFLIEYLNVD 353 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G+ +F L+D D+A WQ +G D + + +P K DP G ++R W Sbjct: 354 WRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRW 411 Query: 429 LPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 PEL+ +P +Y+H P L +YP IV Sbjct: 412 CPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450 >gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601] Length = 457 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 211/469 (44%), Gaps = 25/469 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L R N + +K+ A + P G S R+ F + ++ Q Sbjct: 5 VLLNRVFRTKHNPLFSY-VEQNRSKIDACYFIIP-LEDLKGASERKKAFYFGTVNQFLTE 62 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L++ + F + E L +C +Q++ + + +R + Sbjct: 63 LAKY-------EIRPFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRHQREKLTA 115 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + +A+ + + S Sbjct: 116 AGLEIKTIRVQHYFHPRATFKN-----GDEPYKVFTPFYKANRPHVTIQKPAAYSLKQLS 170 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 I P + E+ A+ + F E + Y R++ A TS LS YL+ Sbjct: 171 EITVTGTGHLDHSYPDDGLSEEQAVANWQTFLNESIEAYETNREVLAEIKTSWLSVYLAY 230 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G++ +Q +N+L ++ + +++ EL++REFY LM YP + + F P Sbjct: 231 GLIDIQQIFNQLLDQ----REANEKNYEAFIRELLFREFYYVLMVTYPEMAT-QSFKPNY 285 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 +IEW+ + + WK G TG+PI+DAAM++LN G+MHNR+RM+ + FL KDL +DWR Sbjct: 286 RQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRMVVSQFLTKDLFIDWRW 345 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GE+YF SQL+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD G +I+ +LP Sbjct: 346 GEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQSERFDQDGAYIKQYLPI 405 Query: 432 LNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474 VP Y+H K +L YP PIVDHK++ + + Sbjct: 406 FKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQSRQAIMEKL 454 >gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis] Length = 595 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 134/535 (25%), Positives = 217/535 (40%), Gaps = 81/535 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R DLR+ DN L A + S V A+++ W H S + F +L + Sbjct: 73 IHWFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLS 132 Query: 70 KSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR---- 118 + L++ G+ SN + +W + +K + + + Sbjct: 133 RELAKLGVRLHVKYFIPESPCLSNSREYAQWFSHIIEEIAASKNYDGNSKDDTKDDTDAD 192 Query: 119 -----------------------------------------RDKLLEKRLQHRVICKSFD 137 + K F Sbjct: 193 EPALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRDLKICRLQTQSSNSANFTLKLFH 252 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLPVPAIRLTGPVTPSNIP 194 D ++ PG + Y ++TP+ K + L + +I + N Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWVSFLEANQKDKHTICIEASIPQSSNREKVNPE 312 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--------DIPAIQGTSQLS 246 P N + +K+ ++ +R D+ + GTS LS Sbjct: 313 EIKYQLPDKFMSEMPEQTLNIPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSLLS 372 Query: 247 PYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 Y++ GV+S R + ++ IK + +++ E+ WR+FY+H ++++P + Sbjct: 373 CYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLS 432 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 M PF T I+W D L + W G TG PI+DA M ++ G+++NR RMITASFL Sbjct: 433 MDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLA 492 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+LL+DWR GE +F L+D D ASN GGW + ASTG D PYFR+FN +Q +++DP+G Sbjct: 493 KNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEG 552 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 FIRHWL E + + +H P P IVD + + L ++ Sbjct: 553 KFIRHWL-ENDENDSDNVHEPK------------PNAIVDLRDSRERVLERFREV 594 >gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii] Length = 539 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 189/443 (42%), Gaps = 24/443 (5%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ SL+Q+ SL + G + + +++ L +++FYN Y+ Sbjct: 2 SRWWLKQSLIQLSSSLERLGAPLLVKRVAG---TLDALLQIAHDTGASQVFYNHLYDPVS 58 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + RD +++ L I + L P I + Q + + F + Sbjct: 59 LIRDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPL 118 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY 228 P + L G + S +A + + G F + Sbjct: 119 LPPRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPIL 178 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIW 287 Y +R TSQLSP+L G +S R+ + ++ ++F +L L Sbjct: 179 QYSIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGL 238 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE+ R+L +P + + + W D ++W+QG TG+P++DA MRQL G Sbjct: 239 REYSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATG 297 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 W+H ++R++ +SFLVK L V W G +YF LLD D+ ++ GWQ+ + D R Sbjct: 298 WLHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDR 357 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIV 461 NP +G + DP+G ++R WLPEL+ VP +IH P +L NYP PIV Sbjct: 358 WENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIV 417 Query: 462 DHKKAC---HHTLNQYYAAKKQS 481 + A L++ + KK + Sbjct: 418 EVAAAYYRQQQALDEMW--KKSA 438 >gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010] gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010] Length = 441 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 169/426 (39%), Gaps = 17/426 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62 L W NDLR+ DN AL A N D ++I +F P + + ++ F+ Sbjct: 3 KTGLFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLL 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL +Q +L +G + D + + + V ++ + + E R+ + Sbjct: 62 ESLNDLQHTLEARGQQLIVMK----GDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L + S+ + + ++ FRK + + ++ A+ Sbjct: 118 LRADFPRVQFDSYWTHSLFQ-QRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAV 176 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 ++ + + ++ + D+ + Sbjct: 177 PVSELHEDTLPLPTYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRN--DLDHWSHS 234 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ S +L+ G LS ++ +L++ + + EL+WRE+++ Y Sbjct: 235 TKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYFQWYAFRYRHKL 292 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + Q W G T +P+++A M+QLN G+M NR R I AS + Sbjct: 293 FRPQGLGKKKIT-CCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQIVASCFI 351 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q +++DPQ Sbjct: 352 NELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQRQYDPQQ 410 Query: 423 TFIRHW 428 TFI+ W Sbjct: 411 TFIQKW 416 >gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str. EC4024] Length = 172 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 117/171 (68%), Positives = 137/171 (80%) Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 WTE+++W + LL+AW+ G TGFPI+DAAMRQLN GWMHNRLRMITASFLVKDLL+D Sbjct: 1 RWTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLID 60 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FIR W Sbjct: 61 WRTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRW 120 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 +PEL +VP + IH P W DK ++LNYP PIVDHK+A TL Y AA+K Sbjct: 121 VPELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171 >gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1] Length = 655 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 175/549 (31%), Gaps = 86/549 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + + ++ P + + + ++ + K Sbjct: 7 IYWFRTDLRLHDSPALKAALDLNPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLSK 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + ++T L + + + RD + + + Sbjct: 67 SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIAK 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L L + + + R +P P Sbjct: 123 KAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSIPNPGD 182 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 T + ++ + G + + L + +E+ Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTMEELGLKPATTAHRGGET 242 Query: 235 --------------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 Q T+ LSP++ G LS R + R ++ Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 K S +L++R+ Y A P I W+ S Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 Q WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 ITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW + T + ++R ++P +++D +G F+R Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FYRCYSPIAFPQKWDKEGEFVR 481 Query: 427 HWLPELNNVPTQYIHAPHSWL-----------------DKNDLSLNYPLPIVDHKKACHH 469 ++PEL +YI+ PH YP P+ D + Sbjct: 482 KYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGDGLAAAEGSMKTYPKPMFDFAQRRDI 541 Query: 470 TLNQYYAAK 478 L A Sbjct: 542 CLAGMKNAY 550 >gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f. nagariensis] Length = 1025 Score = 210 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 108/528 (20%), Positives = 185/528 (35%), Gaps = 84/528 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSHFI 61 ++W RNDLR+ DN ++ A +V+ V+ P W A ++ F+ Sbjct: 11 VLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTGAHRAAFL 70 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-----------------------SYC 98 + ++ L G + L+ + Sbjct: 71 LECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEVTSEETRTDVAVA 130 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 + + R + D + G A M + Sbjct: 131 RALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKDMP 190 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD-------------------- 198 F + + +R + P+ P+ Sbjct: 191 DVFTPFREKVEKRCPVRKDLPLPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPPAA 250 Query: 199 -------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250 +P +D A + + + Y + R+ + +++ +P+L+ Sbjct: 251 RPPPPTKHPKAVLDFKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLA 310 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR+ ++ +++ + + ELIWR+++R + + + Sbjct: 311 AGCISPRKIYHEIRKYEAQRQSNK--STYWVIFELIWRDYFRFFALKHGNRIFFETGTSG 368 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + WN D+ L W+ G TG P++DA MR+L G+M NR R AS+LV DL +DWR Sbjct: 369 LPLV-WNPDADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNLASYLVLDLGIDWR 427 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ------------GKRF 418 G +YF SQLLD D+ SN G W AA + FN Q K + Sbjct: 428 RGADYFESQLLDYDVTSNWGNWVAAAGLAGGRIN---HFNIAKQASDVGAFRIGGGSKDY 484 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPI 460 DPQG ++R W PEL +VP +H P + ++YP PI Sbjct: 485 DPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGVDYPNPI 532 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 25/250 (10%) Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y + R+ + +++ +P+L+ G +SPR+ ++ +++ + + ELIWR Sbjct: 733 YFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKYEAQRQSNK--STYWVIFELIWR 790 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +++R + + + + WN D L W+ G TG P++DA MR+L G+ Sbjct: 791 DYFRFFALKHGNRIFFETGTSGLPLV-WNPDPDLWHRWRDGRTGLPLVDANMRELAATGF 849 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R AS+LV DL +DWR G +YF SQLLD D+ SN G W AA + Sbjct: 850 MSNRGRQNVASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRIN---H 906 Query: 409 FNPTIQ------------GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKN 450 FN Q K +DPQG ++R W PEL +VP +H P Sbjct: 907 FNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGC 966 Query: 451 DLSLNYPLPI 460 + ++YP PI Sbjct: 967 RIGVDYPNPI 976 >gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 453 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 95/485 (19%), Positives = 176/485 (36%), Gaps = 42/485 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + ++W + DLR++D+ L+ A N+ V+ ++I P Q + + F++ L Sbjct: 1 MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q+ ++ G ++++ L + Q + T L+ +++ + Sbjct: 61 DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDR---A 113 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + L + R A + A A R Sbjct: 114 VAAWCKSEGVVFHELPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFAPRPPP 173 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + N+P + K K Y + + A G S+LS Sbjct: 174 VLKRCNVPNAAGEDKPLRMKGGRTQARAVAAKFFTPAKLKSYPFSISSPLKAWNGCSRLS 233 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------SGAFSWLNELIWREFYRHLMAFY 298 PYL+ GV+S R+ +L + + A +++ LIWR+ Y + + Sbjct: 234 PYLAYGVVSDREVLQKLNALVNTVHGQGDSVLISKVEDAARFYVDRLIWRQGYLQQLENH 293 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + L AW+ G TGF IDA L GW++ R R Sbjct: 294 TGLETDAFYGDE----PAEVNQEFLNAWQHGRTGFAYIDACQHFLQQTGWLNMRARATLV 349 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF L + W+ Y Q LD + A + G + A+ T + S +++P Q Sbjct: 350 SFACVQLGLPWQPVALYLAQQFLDFEPAIHYGQVRIASGTSHFSQML--VYDPLKQQAEQ 407 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 DP+G F++ WLP + YP PI+D+ ++ + +A + Sbjct: 408 DPKGEFVKRWLP-------------------GYGTAGYPAPIIDNAESLKQGKARLHAMR 448 Query: 479 KQSLL 483 + LL Sbjct: 449 QNRLL 453 >gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] Length = 449 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 108/433 (24%), Positives = 181/433 (41%), Gaps = 18/433 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64 L RNDLR+ DN ALY A S+ +I F P Q + + + F+ S Sbjct: 17 GLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQS 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L Q++ L +G + L +++V +F ++ E + LL+ Sbjct: 76 LKQLRTELEMRGQKLIVLTGTFD----RILTELISERQVDAIFLSQHQGYYERLQLGLLQ 131 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +R ++ ++++ + + + ++ FRK + + + PV A+ Sbjct: 132 QRFPFLPFHETPNNTLFSE-QELPFELADLPETFSQFRKKVE--PLSRNFSVQPVNALPS 188 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQGTS 243 + A D H+ F E Y + R+ ++ Sbjct: 189 LPKNISYPGFKAETLNELASDDFEGGERAALTHLTSYFSGESAGTYKQTRNALDDFSSST 248 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + SP+L+ G LS RQ L+ + ++ EL+WRE++ + Sbjct: 249 KFSPWLAQGCLSVRQIMAALRAYETEFGENE--SSYWISFELLWREYFFWYALKHGKRLF 306 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + S Q W G T +PI++A M+QLN G+M NR R + AS V Sbjct: 307 AFSGLSG-KSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVH 365 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR G YF QL+D D++SN G WQ+ A G D + R FN Q +R+DP Sbjct: 366 ELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-RQFNLEKQTERYDPDNE 424 Query: 424 FIRHWLPELNNVP 436 FI W +L+ P Sbjct: 425 FIERWAGDLSGQP 437 >gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium psychrophilum JIP02/86] Length = 430 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 105/435 (24%), Positives = 179/435 (41%), Gaps = 21/435 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62 +VW + DLR+ DN+ + A S+ ++I V+ + + ++ F+ Sbjct: 3 KTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTGSFRAQFLL 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + K+L G + + + K+F R+ E + +K+ Sbjct: 62 ESLQDLDKNLRAIGSGLVI----TKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKM 117 Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSL 177 ++ L R ++F S L + + V+T FRK Q V + Sbjct: 118 VQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEKI 177 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235 P I T ++ F GE A++ L + + Y + R+ Sbjct: 178 NSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSISNYKKTRN 237 Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + +S+ SP+L++G +SPR +N +K+ +L ++ + EL+WR+F+R + Sbjct: 238 GMVGENYSSKFSPWLALGCISPRFIYNEIKKY--ELQFGANDSSYWLIFELLWRDFFRFM 295 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 Y + I + + + L W G T I+A M +L G+M NR R Sbjct: 296 FKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTGFMSNRGR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 AS+ +L +DWR+G YF QL+D D+ SN G W + A GND + R FN Q Sbjct: 356 QNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGH-RYFNIEKQ 414 Query: 415 GKRFDPQGTFIRHWL 429 +D F WL Sbjct: 415 ASDYDKNKEFRELWL 429 >gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516] Length = 478 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 130/476 (27%), Positives = 207/476 (43%), Gaps = 25/476 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW+R +LR+ D+ AL A V+ VF+ + A + + + Sbjct: 7 LVWVRRELRLGDHPALAEAAATG-RPVVPVFLCDETVEAR---GAAAQWRLGLGVAAFAE 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ G + + + +++++R +E ++ + L Sbjct: 63 ALAGAGSRLVLRRGGAAAALVAL----AREAEAGEVWWSRAHEPVAAALERDVAGALAAE 118 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185 I ++F+ VL PP S+ YKVYTPF K++ + R + Sbjct: 119 GIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPLPPPKRLTAPGRWPES 178 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + +GE A L +F +E++ Y + R+ ++GTS L Sbjct: 179 ERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNRFDVEGTSGL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L++G +S R CW + GA ++L E+ WR+F HL+ P + Sbjct: 239 SENLAVGEISARSCWQ----AGLMARDAGNPGAETFLKEVAWRDFAYHLLHHTPRLATDN 294 Query: 306 PFIPWTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 W + AW++G TG ++DAAMR++ G MHNR RMI S+L K Sbjct: 295 WRPEWAAFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNRGRMIVGSYLTKH 354 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL WRIG+ +F + L D D A+N GWQW A +G D+ P+FR+FNP Q ++FDP G + Sbjct: 355 LLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPDGQAEKFDPDGAY 414 Query: 425 IRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475 R W+ E + P A P W D YP P+V + L Y Sbjct: 415 RRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGRARALAAYK 468 >gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 559 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 185/485 (38%), Gaps = 34/485 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W++ D+R+ DN+AL A + V+ VF+ P Q SA +L +++ Sbjct: 20 AVWWIKRDMRLADNEALTRAVAEH-SLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELR 78 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + + G + +++E ++ T ++ + + + + Sbjct: 79 RRVRRAGAEILV----GWGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRA--- 131 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + ++Q V L ++ + A V AI LT + Sbjct: 132 ------WCRRRGVTVIERPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELR 185 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--------DIPAIQG 241 P + E ++ + + R A + Sbjct: 186 TWAATTPTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFES 245 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDL--------LIKPKSGAFSWLNELIWREFYRH 293 S+LS +L+ G LS RQ + + +L + + S+L L WR+ + Sbjct: 246 GSRLSVHLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQ 305 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + P + +P P + +E D LL+ W++G TGFP++DA MR L T G+ + R+ Sbjct: 306 RLETEPEMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRM 364 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + S L +DWR + D + + Q A G + R +NP Sbjct: 365 RAMAVSVACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQA--GVVGINTIRSYNPFK 422 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473 Q DP FI W+PEL ++P + IH+ ++ YP P+VDH+ + + Sbjct: 423 QALDHDPDARFITRWIPELRDLPAERIHSFDQDPPRSS-ETTYPPPVVDHRTRTRAWVER 481 Query: 474 YYAAK 478 Y + Sbjct: 482 LYQLR 486 >gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545] Length = 559 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 125/247 (50%), Gaps = 9/247 (3%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T+ LSPYL G +SPR ++ LK+ D K + S +L+WRE + +L AF Sbjct: 297 PSTTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWRE-FYYLAAFGT 355 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 P +I W D L AW++G TGFP IDA M QL GW+H+ R A Sbjct: 356 PNYHKMEGNPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVAC 415 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL V W G + F L+D D A N G W W + + YFR++ P GK++ Sbjct: 416 FLTRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMWLSCS-CFFYQYFRVYGPVSFGKKY 474 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472 D GTFIR +LP L ++P +YI+ P + + ++YP PIVDH A + Sbjct: 475 DKDGTFIRKYLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVDYPPPIVDHAVASKECIE 534 Query: 473 QYYAAKK 479 + A K Sbjct: 535 KLAVAYK 541 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + W R LR+ DN AL AC ++ A V +F+ P + A + F+ SL Sbjct: 8 TRSIHWFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRFLLQSLTD 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 + SL +G + D + + +L + Sbjct: 67 LDASLRARGSSLLVLR----GDPKAVVPAALRAWGCDRLTHE 104 >gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102] Length = 604 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 114/545 (20%), Positives = 174/545 (31%), Gaps = 89/545 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + +F P + + F+ S+ ++ Sbjct: 7 VYWFRTDLRLHDSPALKAALDLEPDVLWPIFTWDPYYVYRARGGTNRWQFL--SITKLNP 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129 + + +VT L + + + +RD ++ K + Sbjct: 65 K-----SKLFVLR----EAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKEA 115 Query: 130 ------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177 + P S+ KV R + Sbjct: 116 GVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPIAAPKGLPDPGDMP 175 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + N P G+ + Y I Sbjct: 176 LDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIA 235 Query: 238 AIQ---------------------------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 T+ LSP+L G LS R+ + R+++ Sbjct: 236 LKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAY 295 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--------- 321 + S +LI+R+ Y A + P+ I W+ S Sbjct: 296 GKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVT 355 Query: 322 ------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVD 368 Q WK+G TGFP IDA MRQL GWMH+ R A FL + VD Sbjct: 356 DKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLGRHSVACFLTRGGCYVD 415 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W G E F LLD + A N G WQW + T S YFR ++P G+++D G IR W Sbjct: 416 WERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKW 474 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQ 473 +PEL N+ ++YI+ P ++ YP P+ D K +N Sbjct: 475 VPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGDGLDDQEQGTYPKPMFDFGKRRETCINA 534 Query: 474 YYAAK 478 A Sbjct: 535 MKIAY 539 >gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15] Length = 1229 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 100/542 (18%), Positives = 180/542 (33%), Gaps = 84/542 (15%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLR+ D+ AL AA + ++ P + + + + ++ + +S+++ Sbjct: 580 DLRLHDSPALKAALDLKPECLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSITKLN 639 Query: 77 --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 + + ++T L + + + RD+ + + + + Sbjct: 640 PKSKLFLIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEV 695 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 L L + + + A R +P P T N Sbjct: 696 VIKVGRTLYDPDELVKENNGKPTMSITQVQNAGKKIGAIPRPIPAPKTLPDPGKTDFNFD 755 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE----------QR---------- 234 + I+ + G++ + L + ++ R Sbjct: 756 QEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQELGLKEATTQHRGGETLALKTL 815 Query: 235 --------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + Q T+ LSP+L G LS R+ + R+++ K Sbjct: 816 DETIANSEYTATFEKPKTAPTAFSPQSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKA 875 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------------- 321 S +L++R+ Y A P I W+ S Sbjct: 876 SQPPASLTGQLLFRDMYFGAQAALGYSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYL 935 Query: 322 --------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIG 372 Q WK G TGFP IDA MRQL GW+H+ R A FL + +DW G Sbjct: 936 VDSALAESHFQRWKHGRTGFPWIDALMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERG 995 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 E F L+D + A N G WQW + T + +FR ++P ++D G F+R ++PEL Sbjct: 996 AEVFEEFLIDHESACNIGNWQWLSCTAFFAQ-FFRCYSPVAFPAKWDKNGDFVRRYVPEL 1054 Query: 433 NNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQYYAA 477 + ++I+ P + YP P++D + + A Sbjct: 1055 AHFDKKFIYEPWKAPIADQKKWGCRIVESVDGYVQEGEYPKPMLDFNERRDTCIQAMKNA 1114 Query: 478 KK 479 + Sbjct: 1115 YR 1116 >gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 125/485 (25%), Positives = 189/485 (38%), Gaps = 40/485 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L WL D R DN AL AAC +D ++AVF Q A + +L Sbjct: 5 GLFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQ---GAASRWRLEQALRAFD 59 Query: 70 KSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L ++ G + + L + ++ + L L Sbjct: 60 AALRKRTGGRGVLVLR----GEPDRILPALVQNTGAQRIHQSDWPTAGMRAVQDRLRAAL 115 Query: 128 QHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LL ++L A Y+VYTPF +AL Q+ R P Sbjct: 116 APLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPARITPCAD 175 Query: 187 P-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + ++ + ++ Y RD P Sbjct: 176 DHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFLDQAAVYPAGRDHPDQPA 235 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS LS +L++G +SPR+ W G +L+E+IWREF HL+ P + Sbjct: 236 TSNLSEHLALGEISPRRIWAIAS-LRAAAEPALAPGITKFLSEVIWREFSWHLLIANPDL 294 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W+E W + + L W+Q TG ++DA +R++ G MHNR+RM+ AS+L Sbjct: 295 PTQPWRQEWSEF-PWQQRTSALSRWEQAATGISLVDAGLREMRVTGRMHNRVRMVVASWL 353 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 K ++ DWR+G ++F L D D A+N WQW A G D+ PYFRIFNP Q + FD + Sbjct: 354 TKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYFRIFNPVKQAEEFDKK 413 Query: 422 GTFIRHWL--------PEL----NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 G + R WL PE +++PT + H W + + Sbjct: 414 GIYRRKWLAGFDGSAAPEAIAYHDSLPTDW-HVARHWREDASDER--------LRGGREA 464 Query: 470 TLNQY 474 L+ Y Sbjct: 465 ALDAY 469 >gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23] Length = 417 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 194/469 (41%), Gaps = 54/469 (11%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++LVW R DLR+ D+ AL A S ++ + + P R S R+ + ++ + Sbjct: 1 MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLR---TSPRRRAWFLENVRAL 55 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + ++G + + E + + + ++ + Y RD E L Sbjct: 56 RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAAL- 110 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + H L + P + + Sbjct: 111 -----------------GVPLHLLPAPHLIPPDLPRAHRVYTPFSRNFQGLDPPLPAPEA 153 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 P P+ GE+ A L F + K+ Y +RD +G S+LSPY Sbjct: 154 LPQAPEEGEIPQEDPGLPLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRLSPY 213 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 ++GVLSPR+ + GA W+ EL+WR+F HL+ +P + + Sbjct: 214 FALGVLSPREAAWEALRRGGE-------GARKWVAELLWRDFSYHLLYHFPEMAQ-RALD 265 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 E + W +D L QAW G TG P++DAAMR+L G++ NR RM A F VK LL+ Sbjct: 266 ARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKYLLLP 325 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W+ EE F LLDGD A N GWQWA G D+ PYFR+FN QG+R DP G ++R + Sbjct: 326 WQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAWLRRF 385 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 PE P+ + P P+VD +A L Sbjct: 386 APE---YPS---YEPK-------------DPVVDLAEARRRYLALAKGL 415 >gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] Length = 442 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 192/447 (42%), Gaps = 35/447 (7%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------------ISAR 56 +LVW RNDLR+TDN +L AC N D KVI ++ P ++ Sbjct: 3 NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ FI ++ ++K L + GI + D + + +T ++ +++ +E Sbjct: 62 RAQFIIEAIEDLRKQLDKHGIPLLVYH----DSPVNVFPDIIKEYDITNIYLQKEWTRDE 117 Query: 117 VRRDKLLEKRLQ----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----- 167 V ++ LL L+ +++D + P ++ ++ V+T FRK + Sbjct: 118 VEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIR 177 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 LV +P++ T ++ + G A L + + Sbjct: 178 TLVDIKDYQQELPSVVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWERLNHYFWDTG 237 Query: 228 --YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 YY + R+ I +S+LS +L+IG +S R+ + ++ ++ + + E Sbjct: 238 KLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEVKKNQ--DTYWLIFE 295 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 LIWR+F++++ + I ++ EW L W G T ++A M++L Sbjct: 296 LIWRDFFKYVSLKNGNDIFKLGGI-LHKEYEWKSSERELSKWINGETHERFVNANMKELA 354 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 GWM NR R AS+ DWRIG YF L+D D+ SN G W + + GND Sbjct: 355 ATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGNDPRN 414 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPE 431 R FN +Q R+D GT+ R WL E Sbjct: 415 --RTFNIELQASRYDSDGTYQRMWLQE 439 >gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis subsp. tularensis MA00-2987] Length = 355 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 169/345 (48%), Gaps = 16/345 (4%) Query: 143 PPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 P YKVYTPF + + + S + Sbjct: 18 EPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLNNSENLDSLKLIEPKH 77 Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 +Q I + IGE + IL +F KV Y RD + TS+LSPYL G +SP Q Sbjct: 78 SWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDSTSKLSPYLHFGEISPNQI 137 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 +N + L + ++ EL+WR+F + + +YP K + +W+ D Sbjct: 138 FNAV-----QSLDYIGNNEEHFIKELVWRDFSYYQIYYYPE-LHNKNINQKFDSFKWDND 191 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 LL+ W++G TG PI+DA MR+L G+MHNR+RMI ASFL+K+ L+ W+ GE++F Sbjct: 192 PTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDT 251 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L D D ASNN WQW A G D+ PYFRIFNP +Q ++F+ +IR ++PEL +P + Sbjct: 252 LFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKL 310 Query: 440 IHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I P + L NYP PIVD KK+ L + K Sbjct: 311 IAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHNQIK 355 >gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4] gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4] Length = 694 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 116/550 (21%), Positives = 186/550 (33%), Gaps = 92/550 (16%) Query: 10 HLVWLRNDLRITDNKALYAACHNS---------DAKVIAVFIATPEQWRQHGISARQSHF 60 +VW R DLRI DN AL AA + ++ ++I + ++ + F Sbjct: 99 AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL--HRPKRQRCGPVRFQF 156 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ + +S+++ D+ E L + VT LF+ V RD Sbjct: 157 LLEAIEDLARSIAKLDGRLLVLS----GDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRD 212 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + + + V L + R I + + +P P Sbjct: 213 NRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQPIPAP 272 Query: 181 AIRLT-------------------------------GPVTPSNIPRFFDYPFQAIDPMFP 209 L G V + F P A P Sbjct: 273 VKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFGLTPP 332 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ------------LSPYLSIGVLSPR 257 + K + ++R + + LS YLS G LS R Sbjct: 333 TPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAR 392 Query: 258 QCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFY-----------PSVCMGK 305 + + R+ + +P + +L+WREF+ M + Sbjct: 393 EFFYRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNFDSQELNPSCKQIDWR 452 Query: 306 PFIPWTEKIEWNKDSHLL--------------QAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + Q WK G TGFP IDA MRQ+N GW H+ Sbjct: 453 LLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTHH 512 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 R A FL + L + W G YF +++D D N G W W +++ Y R+ + Sbjct: 513 AGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSAS-CFFTNYRRMAS 571 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHK 464 P+ +R+D QG FIR ++P L N+P +Y+ P + NYP PIVD K Sbjct: 572 PSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVDSK 631 Query: 465 KACHHTLNQY 474 A + Sbjct: 632 LAMSRCIAGM 641 >gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C] Length = 427 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 22/432 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSHFIYASLLQ 67 +VW N+LR+ DN L AAC N+ +V+ V+ PE+ I ++ F SLL Sbjct: 3 SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLD 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL + I F D + L Y + + L++ + + EV +K +E ++ Sbjct: 63 LKRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI 118 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + S D LL P I ++ KV+TPFRK + L +P + Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAPLEVPAKQTNTSNT 178 Query: 188 VTPSNIPRFFDYPFQ--------AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIP 237 + + + F GE+ A + + + Y E R+ Sbjct: 179 PLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKETRNGL 238 Query: 238 AI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 +++LS +L+ G +S R + +LK + +K + L EL+WREF++++ Sbjct: 239 IGLDYSTKLSAWLANGCISARTIYYQLKAY--EKTVKANESTYWVLFELLWREFFKYVGL 296 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + I + D + W G T P I+A M++L+ GWM NR R Sbjct: 297 KHKNDLFKSGGI-NHKSFAQGNDPKVYNDWISGTTHSPFINANMKELSQTGWMSNRGRQN 355 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS+ K L DWRIG YF SQL+D D+ SN W + + GND P RIFNP Q Sbjct: 356 VASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNPERQAD 413 Query: 417 RFDPQGTFIRHW 428 +DPQ F + W Sbjct: 414 MYDPQKAFQKLW 425 >gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 551 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 114/502 (22%), Positives = 194/502 (38%), Gaps = 50/502 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISAR 56 M ++ + +VW RNDLR+ DN + A + A+V+ V++ ++ Sbjct: 1 MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60 Query: 57 QS-----HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-----------WLDSY--- 97 + F + ++++L G D E L Sbjct: 61 RFGAGRGKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLTGANDKTIVLTQTEVT 120 Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 + + + E +RL + + D G + Sbjct: 121 SEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFR 180 Query: 158 YTPFRKALIQNLVQADLRS------------LPVPAIRLTGPVTPSNIPRFFDYPFQAID 205 K ++ +V A + +P + + P + D Sbjct: 181 NKVESKCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWLKDGAD 240 Query: 206 PM----FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258 F GE AL ++ + + Y E R+ + +++L+P+L++G +SPR Sbjct: 241 ERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGCVSPRY 300 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 + ++ + + + ELIWR+F++ + + W Sbjct: 301 VVSEIRRY--ESARVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAN-RTASWKS 357 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D +L+AWK G TG+P+IDA MR+L G+M NR R AS+L D VDWR G ++F Sbjct: 358 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWRHGADWFEH 417 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D ASN G W A+ G R FN Q K +DP G +++ W+PEL +P Sbjct: 418 HLLDYDTASNWGNW--CAAAGMTGGRINR-FNIAKQTKDYDPSGDYVKRWIPELREIPAA 474 Query: 439 YIHAPHSWLD--KNDLSLNYPL 458 YI P+ ++ +SL+YP Sbjct: 475 YITEPNQAPRELRDRISLDYPN 496 >gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126] Length = 435 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 98/429 (22%), Positives = 179/429 (41%), Gaps = 19/429 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64 L W R+DLR+ DN A+ A C +V ++I P + + + F+ + Sbjct: 17 GLYWFRHDLRLHDNAAISALCEAVQ-QVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQT 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ +++ L++ G + D E L + + L + +E + ++ Sbjct: 76 LVDLKRQLAKLGHDLLIVK----GDPAECLVQLMKSGQYSHLGVSEHCGFDERAQLNAVK 131 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + ++ + ++ + +M V++PFR+ + ++ + Sbjct: 132 RFFDSVTVIETPTFGLF-DAQTLPFNIEEMPDVFSPFRRKVEKHCKPLSVHPPMDSLPSP 190 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQN---ALHILRKFCKEKVYYYVEQRDI-PAIQ 240 P + D + +G + F + Y + R+ Q Sbjct: 191 FTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKAAATYKDTRNALDTWQ 250 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++LS +L+ G LS R+ ++++ + ++ + EL+WREF+ L Y + Sbjct: 251 DSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKNDSTYWIYFELLWREFFHWLQCKYGA 308 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I +K W +G TG+PI+DA MRQL G+M NR R + AS Sbjct: 309 NWFRFGGI-QGKKPSTQHCPETFALWCEGKTGYPIVDACMRQLAETGYMSNRGRQLVASC 367 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 V +L DWR G +F QL+D D+ SN G W + A G+D + R FN Q + +D Sbjct: 368 FVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDS 426 Query: 421 QGTFIRHWL 429 G F + WL Sbjct: 427 DGQFCKKWL 435 >gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii] Length = 433 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 113/438 (25%), Positives = 171/438 (39%), Gaps = 20/438 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSH 59 + L+W R LR+ DN +L AACH S V VF+ P + + Sbjct: 1 MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQ 59 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + ++LS +G + I+W + C + +R +I E Sbjct: 60 FLLESLQDLDRNLSSRGSKLLLVH----GNPIQWRIRKLCFEFDTEPYALDRDAKIKEHA 115 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 +DK +E + D + G K P K + Sbjct: 116 KDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSSIPPTGDL 175 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIP 237 + P F F +G L + + Sbjct: 176 HGIKVVPVPTLEELGYTDFHEDFSPFRGGETVGLTRLEDSLANEKWVCEFEKPKGDPTAF 235 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 T+ LSPYL G LS R ++R+KE + S +L+WREF+ Sbjct: 236 IKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAKSFTSPPV-SLEAQLLWREFFYTAAYA 294 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P ++I W D LL AW+ G TG+P IDAAM QL GWMH+ R Sbjct: 295 TANFDKM-VGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWMHHLARHAV 353 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + D+ V W G + F L+D D + NNG W W +++ + Y RI++P K Sbjct: 354 ACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRIYSPITFAK 412 Query: 417 RFDPQGTFIRHWLPELNN 434 ++D QG +I+H+LP + Sbjct: 413 KYDRQGNYIKHFLPVIKG 430 >gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470] Length = 267 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 117/256 (45%), Positives = 149/256 (58%), Gaps = 13/256 (5%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y +RD P TS LS +L G LS R W L L ++ EL WR+ Sbjct: 8 YENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASAPSSL------SKETFKKELAWRD 61 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + +++ + I+W D + W++G TG+PIIDAAMRQLN GWM Sbjct: 62 -FYNMIYSTFPQQKEEAIQEKFRYIQWANDPEMFAKWQKGETGYPIIDAAMRQLNQTGWM 120 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIF Sbjct: 121 HNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 180 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463 NP IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ Sbjct: 181 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGENYPKPIVDY 240 Query: 464 KKACHHTLNQYYAAKK 479 + TL Y +K+ Sbjct: 241 ASSKKQTLFLYEVSKE 256 >gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 655 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 176/549 (32%), Gaps = 86/549 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + A + ++ P + + + ++ + K Sbjct: 7 IYWFRTDLRLHDSPALKAALDLNPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQDDLSK 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + + ++T + + + + RD + + + Sbjct: 67 SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKVLEIAR 122 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L L + + + R +P P Sbjct: 123 KSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSFPNPGD 182 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 T + ++ + G++ + L + +E+ Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTMEELGLKPATTAHRGGET 242 Query: 235 --------------------------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 Q T+ LSP++ G LS R + R ++ Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321 K S +L++R+ Y A P I W+ S Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362 Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366 Q WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 ITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW G E F L+D + A N G WQW + T + ++R ++P +++D +G +R Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQ-FYRCYSPIAFPQKWDKEGKLVR 481 Query: 427 HWLPELNNVPTQYIHAPHSWL-----------------DKNDLSLNYPLPIVDHKKACHH 469 ++PEL +YI+ PH YP P+ D + Sbjct: 482 KYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGDGSAAAEGSMKTYPKPMFDFAERRDI 541 Query: 470 TLNQYYAAK 478 L A Sbjct: 542 CLAGMKNAY 550 >gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Ferrimonas balearica DSM 9799] Length = 435 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 100/428 (23%), Positives = 160/428 (37%), Gaps = 21/428 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61 M L+W R+DLR+ DN AL A +A ++ ++ P + W+ + FI Sbjct: 1 MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SLL + L G D + + KL + E R+ Sbjct: 60 SESLLDLANRLEALGQQLVIR----IGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQY- 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + + + L P + + + + R L P Sbjct: 115 ----LALKQEVGEHRCEVWQSHTLFTLEQLPFALDELPPTFSQFRRRVQRLEWRPLYPPV 170 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQ 240 L P+ ++ H+ +Y + R+ Sbjct: 171 TELPKPLALTS-ETPPPVSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDDWS 229 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++LSP+L+ G LS R +L+ + EL+WRE+++ L + Sbjct: 230 SSTKLSPWLAQGCLSARTAVAQLEAY--EAQHGANESTEWIQVELLWREYFQWLALAHGH 287 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + W QG T +PI++AAM QLN G++ NR R + AS Sbjct: 288 RLFAFTGTSGVRR-PCCFYPERFARWCQGQTPYPIVNAAMNQLNATGFLSNRARQLVASA 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV +L +DWR G YF QL+D D+A N G WQ+ A G D + R F+ Q +DP Sbjct: 347 LVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW-RHFDLDKQTALYDP 405 Query: 421 QGTFIRHW 428 G F+R W Sbjct: 406 DGAFVRQW 413 >gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina 98AG31] Length = 579 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 188/564 (33%), Gaps = 115/564 (20%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV------------IAVFIATPE--------- 46 SV + RNDLR+ DN ++ A +S V + +++ Sbjct: 4 SVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGLPG 63 Query: 47 -----------QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 + F+ S+ ++Q L Q+G S ++ + Sbjct: 64 YQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSIIQ 123 Query: 96 SYC------------LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143 + + ++ + + + H +D LP Sbjct: 124 ALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPFLP 183 Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ- 202 + + + + + L + L+ R + +P ++ P ++ + Sbjct: 184 SKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKMDN 243 Query: 203 -----------AIDPMFPI-----------------------GEQNALHILRKFCKEKVY 228 D P G + V Sbjct: 244 ILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTGNPAPVR 303 Query: 229 YYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ +++ SP+L+ G LSPR+ L+E + + L EL+W Sbjct: 304 SYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWVLFELLW 361 Query: 288 REFYRHLMAFY-----------------------PSVCMGKPFIPWTEKIEWNKDSHLLQ 324 R+++ + Y + + + Sbjct: 362 RDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPFQNLKMNQNQQGSRAINQAAS 421 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 W + TG P +DA M +L G+M NR R ASFL KDL VDWRIG E+F SQLLD D Sbjct: 422 RWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAEFFESQLLDYD 481 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 +SN G WQ+ A GND R FNP Q K +D +G ++R WLPEL VP + IH P Sbjct: 482 PSSNYGNWQYVAGVGNDPR-ASRQFNPIKQAKDYDAKGEYVRCWLPELAKVPQKSIHNPW 540 Query: 445 ---------SWLDKNDLSLNYPLP 459 S + YP Sbjct: 541 LLTSKQWEESVGENQRRPEGYPHR 564 >gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71] Length = 434 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 105/420 (25%), Positives = 164/420 (39%), Gaps = 13/420 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W RNDLR+ DN L A + ++ ++ G+ ++ FI SL +Q Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQ 62 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L G Q + V + ++ E R ++L +RL Sbjct: 63 DDLQPLGQSLLVLQ----GSPELVIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERLHI 118 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + + L L + ++PFR+ + +NL + S +P + VT Sbjct: 119 PVTEHAGNTLFRRSDIKALCPELP--RSFSPFRRKVEKNL-EPLKPSRDLPQLPPPPAVT 175 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQLSPY 248 IP P + + + + Y E R+ +G+S LSP+ Sbjct: 176 FHRIPDAAVKPPVGLPLRG-GSSAGQRRLKQFLHSGAIRSYKETRNCLDPLEGSSTLSPW 234 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L++G LS R+ + E + + EL+WRE++ H Sbjct: 235 LALGSLSAREVAAAVHEHEAQEGANE--STYWLVFELLWREYFFHRALQDGVSLFRHGGR 292 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + W G T P+++A M QL GWM NR R I AS L+ D +D Sbjct: 293 EG-KVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIHDFGID 351 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 WR G +F L+D D+ SN G WQ+ A G D R FN Q ++DP G FI W Sbjct: 352 WRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIEKQTAQYDPDGVFIAKW 410 >gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27] Length = 420 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 124/421 (29%), Positives = 188/421 (44%), Gaps = 35/421 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ D+ AL A V+ + + P + R+ + ++ +++ Sbjct: 5 LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + +G + ++ E + L Sbjct: 60 AYRARGGALWVLEGLPWEKVPEAARRLKAK----------------------AVYALTSY 97 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + D+ + + H L + P + R L V A P Sbjct: 98 TPYGRYRDAKVQEALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEAPLPAPEALP 157 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 P+ GE+ AL LR F + K+ Y E+RD +G S+LSPY + Sbjct: 158 KGPEEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFA 217 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +GVLSPR + + GA W+ EL+WR+F HL+ +P + +P P Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A F VK LL+ W+ Sbjct: 270 FQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ W P Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389 Query: 431 E 431 E Sbjct: 390 E 390 >gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901] Length = 447 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 107/425 (25%), Positives = 172/425 (40%), Gaps = 14/425 (3%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYA 63 V + W NDLRITDN AL A + + +I V+I P + + R + F+ Sbjct: 10 VGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL Q+ L+ G + S ++ + + + +RQ E ++ +L Sbjct: 69 SLAQLSVDLNAVGQTLLVLRES----PLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAML 124 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++R + ++ + + K ++ FRK + +L + Sbjct: 125 QRRYRLISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRNLLPVCDLPPP 184 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G R Y + + ++ Sbjct: 185 PRGLKRDHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYKTVRNALDGWGNST 244 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LSP+L+ G LS Q L E + + EL+WRE+++ + + Sbjct: 245 KLSPWLANGCLSVNQVLLALGEY--EAQYSANESTYWISFELLWREYFQWSAYLHGARLF 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + I ++K+ W +G T FP+++A M+QLN G+M NR R ITAS LV Sbjct: 303 ARDGINGSKKLNTFYS-QRFMQWCEGSTPFPLVNALMKQLNVTGYMSNRGRQITASCLVN 361 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Q + FDP+G Sbjct: 362 ELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFNLDKQREIFDPEGD 420 Query: 424 FIRHW 428 FI W Sbjct: 421 FIAKW 425 >gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus] Length = 420 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 124/421 (29%), Positives = 188/421 (44%), Gaps = 35/421 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ D+ AL A V+ + + P + R+ + ++ +++ Sbjct: 5 LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + +G + ++ E + L Sbjct: 60 AYRARGGALWVLEGLPWEKVPEAARRLKAK----------------------AVYALTSY 97 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + D+ + + H L + P + R L V A P Sbjct: 98 TPYGRYRDAKVQEALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEAPLPAPEALP 157 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 P+ GE+ AL LR F + K+ Y E+RD +G S+LSPY + Sbjct: 158 KGPEEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPAYAEERDRLDGEGGSRLSPYFA 217 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +GVLSPR + + GA W+ EL+WR+F HL+ +P + +P P Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + + W +D L +AW +G TG P++DAAMR+L+ G++ NR RM A F VK LL+ W+ Sbjct: 270 FQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ W P Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389 Query: 431 E 431 E Sbjct: 390 E 390 >gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145] Length = 433 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 108/433 (24%), Positives = 174/433 (40%), Gaps = 21/433 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 LVW RNDLRI DN+ L A S +++ V+I P + ++ FI S+ Sbjct: 7 LVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSV 65 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++KSL G + E L + V +++++R+ E +E Sbjct: 66 TDLKKSLKALGGDLLVVK----GKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVED 121 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + L L ++ + ++ + I + Sbjct: 122 ALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPGQISVP 181 Query: 186 GPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPA-I 239 + S +P D F+ +D GE + L+ L ++ EK Y +R++ Sbjct: 182 DSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKRNLLTGF 241 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 SQLSP+LS+G +SPR+ + LK + NEL++R+F+R + + Sbjct: 242 NNNSQLSPWLSLGCISPRKVYWELKRYEHEKGGTDNINL--LFNELLFRDFFRFMFKKHS 299 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + P + E WK G TG ++DA M +L G M + R A+ Sbjct: 300 TAYFVDIAQPMSLNAEQQVLFE---KWKNGETGIDLVDANMLELKHRGTMAYKGRQTVAA 356 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L+ +L + W G YF L+D ASN G W A G FN Q K D Sbjct: 357 YLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLDKQIKDSD 416 Query: 420 PQGTFIRHWLPEL 432 P+G +I+ WL EL Sbjct: 417 PKGDYIKVWLSEL 429 >gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 202 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 132/201 (65%), Positives = 162/201 (80%) Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 WLNELIWREFYRHLM +YP++C +PFI WT+++ W ++ H QAW++G TG+PI+DAAM Sbjct: 2 WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 62 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 182 VEHKQARIATLSAYEAARKGA 202 >gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii KT0803] Length = 438 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 108/442 (24%), Positives = 193/442 (43%), Gaps = 23/442 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISA 55 M + LVW RNDLRI+D++AL AC++ + K+I ++ P +Q+ Sbjct: 5 MPKKQTTNTGLVWFRNDLRISDHEALTTACNSHE-KIIGIYCFDPRHYLKDQFGFIKTGK 63 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ ++ ++QK+L I Q + + + + V +++ +++ Sbjct: 64 FRSKFLIETIEELQKNLETLNIELLVFQ----EKPEDIIPEIISEYSVKSVYFQKEWTQE 119 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----- 170 E +K + + + + + P + + KVYT FRK+ + Sbjct: 120 EHDVEKEVRRLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVRELV 179 Query: 171 --QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + L + +P + A + + + + Sbjct: 180 NLPSPLPARNLPEKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKNLT 239 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +S+LS +L+ G +S RQ ++ +K+ + I + + ELIW Sbjct: 240 RYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFELIW 297 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+F++++ + + I +EWN D L+ W G T + ++A MR+++ G Sbjct: 298 RDFFKYISLKHANKIFKLGGI-QNRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISNTG 356 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 +M NR R SF K+L DWRIG YF S L+D D+ SN G W + + GND P R Sbjct: 357 FMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PRDR 414 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 FN Q +R+DP + WL Sbjct: 415 KFNIKNQAERYDPNNEYQDLWL 436 >gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum ATCC 35910] Length = 432 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 104/442 (23%), Positives = 178/442 (40%), Gaps = 25/442 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56 M ++++W DLR D+++LY D +AVF+ + + Q R Sbjct: 1 MPKKQK--INILWFTKDLRTRDSESLYNIMQE-DLPFLAVFVFDSDLFAQKQFGFRKIGK 57 Query: 57 -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ S+ +++ L++K I Q + + + + + K+F +++ Sbjct: 58 YRARFLLESIEDLKQRLAKKNIPLLVRQ----NKTENVFEEIAKEFEIVKIFCQQEWTKE 113 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E + K + + KS+ +L P T K L++ + Sbjct: 114 ETDLQTKIRKTVPYAFWEKSYSQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFE 173 Query: 176 -----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVY 228 + +T ++ FP GE + + Sbjct: 174 TEQLICYKSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLS 233 Query: 229 YYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y E R+ + +S+ SP+LS G LS ++ +K + + EL+W Sbjct: 234 RYKETRNGLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLW 291 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+F+R++ + + K I + + L++ WK G T ++A M +L G Sbjct: 292 RDFFRYVSLQHKDLIFRKKGI-THRQYSASHHQELIRKWKNGETTSDFVNANMIELQKTG 350 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WM NR R AS+ K L DWRIG YF L+D D+ SN G W + A GNDS R Sbjct: 351 WMSNRGRQNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--R 408 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 FNP Q + +DP+ F R WL Sbjct: 409 TFNPERQAELYDPKQEFRRLWL 430 >gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299] gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299] Length = 566 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 89/251 (35%), Positives = 124/251 (49%), Gaps = 10/251 (3%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 T+ LSPYL G +SPR W+ L+ V+L K S +L+WREFY Sbjct: 295 FMAPATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFYYLAG 354 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P+ +I W D L AW++ TGFP IDA M QL GWMH+ R Sbjct: 355 YGTPNYDRM-AGNRICRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARH 413 Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 A FL + DL V W G F +L+D D A NNG W W + + YFR++ P Sbjct: 414 AVACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMWLSCS-CFFYQYFRVYGPVSF 472 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 GK++D +G +IR +LP+L ++P +YI+ P + + ++YP PIVDH A Sbjct: 473 GKKYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDYPAPIVDHAVASK 532 Query: 469 HTLNQYYAAKK 479 + + AA Sbjct: 533 ECIEKIAAAYN 543 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R LR+ DN AL AC + A V VF+ P + + A + F+ SL + Sbjct: 7 ILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESLTDLDA 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 SL +G D + + R +L Y E Sbjct: 66 SLRARGSSLLVLH----GDPARVIPAALEAWRCDRLCYEFDTEPY 106 >gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8] gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna Chromophore gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus] gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8] Length = 420 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 121/421 (28%), Positives = 186/421 (44%), Gaps = 35/421 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R DLR+ D+ AL A V+ + + P + R+ + ++ +++ Sbjct: 5 LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTT---PRRRAWFLENVRALRE 59 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + +G + ++ E + + ++ + RD + + L Sbjct: 60 AYRARGGALWVLEGLPWEKVPEA----ARRLKAKAVYALTSHTPYGRYRDGRVREALPVP 115 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + ++Y L G P Sbjct: 116 LHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPREDPGLPLP 175 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 GE+ AL LR F + K+ Y E+RD +G S+LSPY + Sbjct: 176 E------------------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFA 217 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +GVLSPR + + GA W+ EL+WR+F HL+ +P + +P P Sbjct: 218 LGVLSPRLAAWEAERRGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPR 269 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + W +D L QAW +G TG P++DAAMR+L+ G++ NR RM A F VK LL+ W+ Sbjct: 270 FQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWK 329 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 EE F LLDGD A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ W P Sbjct: 330 RCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389 Query: 431 E 431 E Sbjct: 390 E 390 >gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 562 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 88/540 (16%), Positives = 155/540 (28%), Gaps = 75/540 (13%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + L+W R LR+ DN AL A + + VF+ P + + A + F+ SL Sbjct: 11 TRSLIWFRKALRVHDNPALAAGIARAKSA-QPVFVLDPWFCKPSRVGANRMRFLLQSLRD 69 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L ++G + L C +V + + E RD + L Sbjct: 70 LDATLRERGSSLLVLH----GEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTAVRGAL 125 Query: 128 QH-------------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + + + PP + + K+ P + A Sbjct: 126 ERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAALDAPKAMPAPF 185 Query: 175 RSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 L V P+ ++ GE L LR+ + Sbjct: 186 TGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAIGGETEGLRRLRRQLSRTEWV 245 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + Q+ SP + R D + Sbjct: 246 HTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDMLMTPSTTALS 305 Query: 290 FYRHLMAFYPSVCMGK------PFIPWTEKIEWNKDSHLLQAWKQ--------------- 328 Y P V + F + + W++ Sbjct: 306 PYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLVGAGTPNFDKM 365 Query: 329 ----------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD---------- 368 + A W+ + + + L Sbjct: 366 EGNPICRQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIHHLARHAVACFLTRGD 425 Query: 369 ----WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 W G + F L+D D A NNG W W + + YFR++ P K++D G + Sbjct: 426 LFVHWEWGRDTFDRDLVDADWALNNGNWMWLSCS-CFFYQYFRVYGPHSFAKKYDKDGAY 484 Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 ++H+LP L N+P +Y++ P + ++YP PIVDH A +++ A Sbjct: 485 VKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHATASKACIDKIATAY 544 >gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 187 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 118/187 (63%), Positives = 144/187 (77%) Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M +P++C +PF+ WT ++W ++ L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR Sbjct: 1 MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q Sbjct: 61 MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474 G+RFD QG FIR WLPEL VP IH P W KN+ L+YP PIV+HK A TL+ + Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180 Query: 475 YAAKKQS 481 A+ + Sbjct: 181 ERARSAA 187 >gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica] Length = 476 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 185/454 (40%), Gaps = 26/454 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN+ALY A S V ++I Q + SA ++ F+ L + Sbjct: 8 VHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDLD 66 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + G D+ + +C + +T++ + + EI RD+ + K + Sbjct: 67 EGLKKYGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHR 122 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I KSF L ++ + A I ++ Q V A Sbjct: 123 MEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAKHFKLGS 182 Query: 189 TPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239 I + F P GE+ AL +L+ + + + + Sbjct: 183 KKIIIFKKSILAFGVWGHQAPRSLPIYRGGERQALKVLQAKINDPTLFTLNGFNQGVKTK 242 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 T+ LS Y + G +S R W ++ I ++++REF+ ++ A Sbjct: 243 LPHTTYLSAYQNYGCISTRHFWKAAEKLPESKTIM-------LRGQIMYREFF-YVAASQ 294 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + +IEW K+ L AW++G TG+P IDA MRQL T G++H+ R A Sbjct: 295 VNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVA 354 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 SFL L ++W G+E F +DGD A N G W W + + +P +R Sbjct: 355 SFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFARR 414 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 +DP+G F R + PEL N+P +Y+ +P Sbjct: 415 WDPEGHFTRKYCPELKNMPLKYLFSPWEAPVNVQ 448 >gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] Length = 441 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 176/434 (40%), Gaps = 19/434 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56 M+A LVW DLR+ DN L A +++ F+ ++ + Sbjct: 1 MEAKHQ--TGLVWFNLDLRLIDNLTLIRAAEQCQ-QLVCCFVIDESWFKGNRYGLNGISQ 57 Query: 57 -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + +I ++ + SL Q G + + + V ++ + + Sbjct: 58 PRWRYIQQAIADLAASLQQHGQQLIIRK----GQPTTEISTLISTLEVDAVYCSDDPGVY 113 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E RR L KR + + + ++L L+ L+ + + L + Sbjct: 114 ERRRWDTLVKRFPYITFERVSNHTLLTERE--LDFPLEELPATYSAFRKRFEPLAETFPS 171 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + ++ P+ I + + H+ + F +Y E R+ Sbjct: 172 GQALSQLKALPPMPRRTIASEHTPFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRN 231 Query: 236 I-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 +++LS L++G +SPRQ + L+ + + + EL+WRE++ H Sbjct: 232 ALDNFADSTKLSAALALGNISPRQVIDALRNY--EATQGANESTYWIVFELMWREYF-HW 288 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + K +K + S AW QG T +PI++A M QLN G+M NR R Sbjct: 289 YLRRFQEKVFKFGGIQDKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGR 348 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS L+ +L +DWR G YF QL+D D+ASN G WQ+ A G D R FN Q Sbjct: 349 QLVASCLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRG-SRRFNLDKQ 407 Query: 415 GKRFDPQGTFIRHW 428 + +DP G FI+ W Sbjct: 408 TQTYDPNGEFIKRW 421 >gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia hollisae CIP 101886] Length = 427 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 107/425 (25%), Positives = 170/425 (40%), Gaps = 18/425 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYAS 64 L W R+DLR+ DN AL ++ VF+ PE +R +R F+Y S Sbjct: 3 GLFWFRHDLRLADNPALITLSRRCSKALM-VFVINPEWFRPAHYQSRHLGRFREEFLYQS 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ L + + + + C + + + + E ++ L Sbjct: 62 LRSLERELKKHKQRLVV----KVGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLS 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + L+ V L S L Y + ++ + P Sbjct: 118 RTLRSEVSVSESFTLFL---RSQLAFDKTTYPATFSQFRKHVEKQNILPCIPISAPDSLP 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243 T +I ++ + + + + Y + R+ Q +S Sbjct: 175 TVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTRNDLDGWQFSS 234 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +LS +L+ G +SPR L + S EL+WRE+++ +M +Y + Sbjct: 235 RLSAWLANGSISPRTVAAELDNY--EYRHGRSDSTQSMYAELLWREYFQWMMHYYGADMF 292 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 I T + +AW+QG T FPI++A MRQLN G++ NR R I AS LV Sbjct: 293 AFAGIKKTRPL-TTYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRGRQIVASCLVN 351 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L VDWR G YF QL+D D+A+N G WQ+ A G D R FN Q +DP G Sbjct: 352 ELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEKQADVYDPNGE 410 Query: 424 FIRHW 428 F+ W Sbjct: 411 FVERW 415 >gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10] gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10] Length = 478 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 123/486 (25%), Positives = 209/486 (43%), Gaps = 33/486 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63 V+++W R+DLRI D++ L A H + + AVF+ + F+ Sbjct: 4 VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL+ + SL +G+ F + I+WL ++ T +F + E R + + Sbjct: 63 SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWL----TERGATDVFLHEHPGFEERRDLEEV 118 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ L H S ++ + + ++ + RS + Sbjct: 119 QRALPHIHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSYD 178 Query: 184 LTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYY 229 P + P + GEQ A +++ Sbjct: 179 TVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLFT 238 Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y E RD + A +S+LS +L+ G LSP++ + + + ++ ++ EL+WR Sbjct: 239 YKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAILD--MEAANGRNESSYWLFFELLWR 296 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+++ LM + K + + W++D L QAWK G TGFP++DAAMR+L G+ Sbjct: 297 EYFQWLMLATDARLFTKQGLLDVAIV-WHEDKALFQAWKDGETGFPLVDAAMRELKATGY 355 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 M NR R ASFL K+L ++W G YF QL+D D ASN G W + A G D R Sbjct: 356 MSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTDLRE-LRA 414 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468 FN QG R+DP+G++ ++WL + +P ++ P ++P PIVD +++ Sbjct: 415 FNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDPVKLSAH----TDWPQPIVDLEESLE 470 Query: 469 HTLNQY 474 + Sbjct: 471 RRKQEL 476 >gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38] Length = 440 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 106/450 (23%), Positives = 182/450 (40%), Gaps = 29/450 (6%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55 M M+ LVW RNDLR DN +LY AC +D VI ++ P + Sbjct: 1 MFKNKIMN-GLVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEK 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 +S F+ ++ ++QK+L +K I + + + + ++ ++ ++ Sbjct: 59 FRSQFLLETVTELQKNLLEKNIRLLVY----YGYPEILIPEIIAKYQIHSIYSQHEWTSE 114 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174 E ++ + + +D + P ++ +V+T FRK + + + Sbjct: 115 ENEIEQEIRNLISAVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTV 174 Query: 175 ----------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 P L S F A + Sbjct: 175 AISPKPLTNLIEETTPIPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDT 234 Query: 225 EKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +K+ Y + R+ +S+LS +L+ G +S R + +++ + + + + Sbjct: 235 KKLAVYKKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEVQK--FEKKVIKNEDTYWLIF 292 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 ELIWR++++++ + + I E WN++ W G T ++A M +L Sbjct: 293 ELIWRDYFKYISLKHGNKIFQLNGILQKEYH-WNQNKKAFNQWANGTTPEHFVNANMIEL 351 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GWM NR R AS+ K+ DWRIG YF S L+D D+ SN G W + A GND Sbjct: 352 QKTGWMSNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND-- 409 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWL-PEL 432 P R FN Q + +D G F + WL PEL Sbjct: 410 PRDRKFNIKRQAEMYDADGKFQKMWLIPEL 439 >gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 596 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 116/552 (21%), Positives = 189/552 (34%), Gaps = 114/552 (20%) Query: 8 SVHLVWLRNDLRITDNKALYA----------ACHNSDAK--VIAVFIATPEQW------- 48 ++ L RNDLR+ DN L A + V+ +++ Q Sbjct: 9 TIAL--FRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66 Query: 49 -------------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 + + +F+ S+ +++ L + G +++ ++ Sbjct: 67 YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKIIE 126 Query: 96 SYCLQ-QRVTKLFYNRQYEINEVRRD-----------KLLEKRLQHRVICKSFDDSVLLP 143 V ++ ++ EV + + L H DD Sbjct: 127 ELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLPFTI 186 Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--------------------- 182 + + KV + L + L+ + P PA+ Sbjct: 187 NKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSLCEGQ 246 Query: 183 ---------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGE----QNALHILRKFC 223 P P P + GE + K Sbjct: 247 GFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYFFKGN 306 Query: 224 KEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + V Y R+ Q +++ SP+L+ G +SPR+ + L + + + L Sbjct: 307 QPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDTYWVL 364 Query: 283 NELIWREFYRHLMAFYPSVCM--------------------GKPFIPWTEKIE----WNK 318 E++WR+++ + + KPF + Sbjct: 365 FEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKGKETP 424 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 AW +G TG P IDA M +L G+M NR R ASFL KDL +DWRIG E+F S Sbjct: 425 VDRNALAWLRGKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAEWFES 484 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D SN G WQ+ A GND R FNP Q K +D QG +++HW+P+L + PT Sbjct: 485 ALLDYDPCSNYGNWQYVAGVGNDPR-TSRQFNPIKQAKDYDSQGDYVKHWIPDLKSFPTN 543 Query: 439 YIHAPHSWLDKN 450 I +P + Sbjct: 544 RIQSPWLMNSQE 555 >gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA] Length = 476 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 103/441 (23%), Positives = 181/441 (41%), Gaps = 23/441 (5%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSH 59 TA++ L W R+DLR+ D AL AAC + ++ V+ + W + + Sbjct: 41 RTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA 100 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR- 118 + A+L + + L+ G + L + + + E Sbjct: 101 VLAAALRDLARQLADLGTRLV----ECCGPPGKVLPALARAVGASTVVCEDIAAPYEQAE 156 Query: 119 ---------RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 + + + + +C + L + AL+ ++ + L Sbjct: 157 VAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPSTPLSPPTRL 216 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVY 228 + P +R V + F P F GE L + ++ + Sbjct: 217 PPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQYLERQLPH 276 Query: 229 YYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y R+ + +S+ SP+L+ G LSPR+ + L++ + G++ EL+W Sbjct: 277 TYKRTRNALAGVDFSSKWSPWLATGALSPRRVISELQQ--FEQSHGQSDGSYWLWFELLW 334 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R L + + + + D + W++ TG P++DAAMR+L T G Sbjct: 335 RDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAMRELETTG 394 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ NRLR + AS+LV +L DWR G +F SQL+D D+ SN G W + A G D R Sbjct: 395 YLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGTDPRG-GR 453 Query: 408 IFNPTIQGKRFDPQGTFIRHW 428 FN Q +DP G+++R W Sbjct: 454 RFNVRKQAAEYDPDGSYLRLW 474 >gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-03] gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-07] gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-22] gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-26] gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-32] gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-12] Length = 309 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 111/277 (40%), Positives = 148/277 (53%), Gaps = 7/277 (2%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNR 262 + + GE+ A L +F + + Y QRD TS LSPY+ +G +S RQ W+ Sbjct: 39 LPSGWTSGEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWHA 98 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 ++ + A +L EL WR+F M P + + + W D+ Sbjct: 99 IRHAEHQ-NPHLATPAEKFLAELGWRDFAWMQMFTTPDLATRN-LRAEFDHMPWRADAAD 156 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L AW+QG TGFP++DA MRQL GWMHNR+RM+ ASFL K LL DWR GE +F +QLLD Sbjct: 157 LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLLD 216 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D A N WQW A TG D+ P+FRIFNP Q +++DP G +IR W+PEL + + IH Sbjct: 217 ADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIHT 276 Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 P + L YP PIVD K L + K Sbjct: 277 PWKSTQR----LKYPAPIVDLKLGRLRALENWKNLPK 309 >gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545] Length = 527 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 118/531 (22%), Positives = 194/531 (36%), Gaps = 69/531 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLR+ DN AL+AA V+A ++ P + + +++ +L + + Sbjct: 3 VVWFRQDLRVRDNPALHAAARTG-RPVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61 Query: 71 SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L G V + S E L ++ NR YE ++ RD EK L Sbjct: 62 TLTRTYGAVLVLRDATRT-SSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALAS 120 Query: 130 RV--ICKSFDDSVLLPPGSILNHALQMYKVYTPF----------------------RKAL 165 +SF+ VL P A + + ++ Sbjct: 121 ECGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASM 180 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 L + I + GE A LR F E Sbjct: 181 RARLPVERRPRSVALESLGLAKMPRRRGGGGVIDWAAGIRDAWTFGEDGADASLRAFLAE 240 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + ++ +R A T+++SPY+ G LS R+ + K V A +L L Sbjct: 241 GLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRRL 297 Query: 286 IWREFYRHLMAFYPSVCMGKPF------------------------------IPWTEKIE 315 WR+ + +P + + Sbjct: 298 AWRDLAYWSLWRFPHLADEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDVFA 357 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 + L+AW++G TG+P++DAAMR+L G++ N +R + A FL++ L +DWR G+ + Sbjct: 358 PCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQLW 417 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 F L+D D+A WQ +G D + + +P K DP G ++R W PEL+ + Sbjct: 418 FHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELSKL 475 Query: 436 PTQYIHAPHSWL------DKNDLSLNYPLPI-VDHKKACHHTLNQYYAAKK 479 P Y H P L YP + VD + A +L ++ Sbjct: 476 PRDYAHCPWEAPATTLARAGVALGREYPKRVLVDLEGARLKSLRAVVEVRR 526 >gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia algicida OT-1] Length = 432 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 190/437 (43%), Gaps = 24/437 (5%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60 M+ LVW RNDLRI D +L A ++ V+AV+ P + + ++ F Sbjct: 1 MTKTGLVWFRNDLRIHDQVSLVKAAKE-NSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +Q L++ I H F+ + + Y +VT ++ +++ EV Sbjct: 60 LIETVSDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVS 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQAD 173 ++K L + V D L P I ++ +V+T FRK + + Sbjct: 116 SAVKKALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEKYAQIRELETISKM 175 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 V + + +P F A + +K+ YY + Sbjct: 176 PEKNRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKT 235 Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ +S+ S +L+ G LSPR ++ +K+ + I + + ELIWR+F++ Sbjct: 236 RNGLVGTAYSSKFSAWLANGSLSPRMIYHEVKKY--ESEIIKNQSTYWMIFELIWRDFFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + + I + EWN DS L+Q W G T P ++A M +L GWM NR Sbjct: 294 YISLKHGNNIFKLEGI-LHKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R AS+ K L +DWRIG YF S L+D D+ SN G W + + GND R FN Sbjct: 353 GRQNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGNDPRN--RTFNVK 410 Query: 413 IQGKRFDPQGTFIRHWL 429 +Q +R+D F WL Sbjct: 411 LQAERYDANKKFQNLWL 427 >gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603] Length = 456 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 138/478 (28%), Positives = 212/478 (44%), Gaps = 29/478 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L RI N L C+ D V I E++ + ++ F + +L Sbjct: 1 MKVGVI-LNRVFRIHHNPLLAYICNQLDTTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +L+ I + + LD + + + ++ +R Sbjct: 58 AFINTLNHYQIQTNVIDYDYLIEFCINQQLDKVVMASDIMSYHHESYDYPHQKQRFHDAG 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + F N+ + YKV+T F K ++Q + I Sbjct: 118 IHVDALRVQHYFSP------RKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDISK 171 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 I P Q D + E+ + F + Y R TSQ Sbjct: 172 --------IVEPAYAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTSQ 223 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L+ G++ Q +N L + +S +++ ELI+REFY LM YP Sbjct: 224 LSIALAYGLIDILQVFNDLLQ----GYESDESNYEAFIRELIFREFYYVLMTQYPETAH- 278 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F I+W D WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL KD Sbjct: 279 QSFKEKYRNIDWVNDKQQFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKD 338 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LL+DWR GE YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 339 LLIDWRWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNALY 398 Query: 425 IRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 I+ WLP NNV + +H + +L ++YP P+V+H + ++ + + Sbjct: 399 IKQWLPTFNNVDSHLLHDTKKHMQLLKQQGIELGIDYPEPMVNHSDSRQRVMSLFKSL 456 >gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis MED217] Length = 432 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 101/436 (23%), Positives = 188/436 (43%), Gaps = 24/436 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64 +LVW RNDLR+ DN +L+ A N++ + AV+ P Q+++ ++ F+ + Sbjct: 3 NLVWFRNDLRVKDNTSLFKASKNANL-LAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++++ L++ I + + + L + ++ +LF+ ++ E + ++ Sbjct: 62 VTELREHLAELNIPIFVYN----EQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVK 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V D L+ P + +++ + + + + Sbjct: 118 ESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFPQT 177 Query: 185 TGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236 ++IP P F GEQ AL+ + + + Y + R+ Sbjct: 178 NFEENSTSIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKKTRNG 237 Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +S+LS +L+ G +S R + ++K + + EL+WR+F++++ Sbjct: 238 LTGKNYSSKLSAWLANGGISARTIYWKIKA--FEQEETKNESTYWLFFELMWRDFFKYIS 295 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y I + +W + + W G T + ++A M+++ GWM NR R Sbjct: 296 LKYGDQIFKIGGILEKDY-DWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSNRGRQ 354 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 AS+ K+L DWRIG YF S L+D D+ SN G W + + GND P R FN Q Sbjct: 355 NVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNIKSQA 412 Query: 416 KRFDPQGTFIRHWLPE 431 +R+D G F R WL E Sbjct: 413 ERYDGDGKFRRLWLQE 428 >gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia profunda SM-A87] Length = 429 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 183/437 (41%), Gaps = 24/437 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 MS L+W N+LR+ DNKAL+ AC + +VIAV+ P ++++ ++ F+ Sbjct: 1 MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 S+ +Q++L+Q I E + ++ +++ ++ E + Sbjct: 60 IESIKNLQENLNQLNISLLIF----LQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+K+L + + P ++ KVYT FRK Q + +P Sbjct: 116 ALKKKLPTIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQK 175 Query: 182 IRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 S P F GE A + + + Y + Sbjct: 176 PESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSEYKQT 235 Query: 234 RDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ +S+LS +L+ G +S ++++K+ + I + + ELIWR+F++ Sbjct: 236 RNGLLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHE--ITKNQDTYWLIFELIWRDFFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + I +K++W LQ W G T ++A + ++ G+M NR Sbjct: 294 YTSLKHGNSIFKLSGI-LDKKLDWKFSIESLQQWINGETKEDFVNANINEIAATGFMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R SF K+L DWR G YF S L+D D+ SN G W + + GND P R FN Sbjct: 353 GRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHWL 429 Q +DP ++ WL Sbjct: 411 KQADLYDPDNQYVDTWL 427 >gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 456 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L RI N L C+ + V I E++ + ++ F + +L Sbjct: 1 MKVGVI-LNRVFRIHHNPLLAYICNQLGSTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 +L+ I ++ L ++C Q++ K+ Y Sbjct: 58 AFINTLNHYQIQTNVMDYNH-------LIAFCKNQQLDKVVMASDIMSYHHESYDYPHQK 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ + + ++ P N+ + YKV+T F K +++ + I Sbjct: 111 QRFQEAGIKVEALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDIS 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 G P Q D + E+ + F + Y R+ TS Sbjct: 171 KIGEPA--------YAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ Q +N L +S +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLIDILQVFNDLL----HGYESNESNYEAFIRELIFREFYYVLMTQYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F IEW D WK G TG+PI+DAAM++LN G+MHNR+RM+T+ FL K Sbjct: 279 -QSFKEKYRNIEWVNDKQQFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DLL+DW GE YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP Sbjct: 338 DLLIDWTWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ WL LN+V + +H + L ++YP P+V+H+ + ++ + + Sbjct: 398 YIKQWLSTLNHVDSHLLHDTQKHMQLLKQQGIQLGVDYPEPMVNHQYSRQRVMSLFKSL 456 >gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435] gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 457 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 227/476 (47%), Gaps = 24/476 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N L+ H + + ++ P++ + + ++++ + + Sbjct: 1 MTIGVI-LNRVFRINNNP-LFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 L Q I S+ D + D + V + E ++R K Sbjct: 59 SFLNDLRQYDIEPFLLDYSDLGDFCD--DKSINEVIVAGDIMSYHQESYDIRHLKKAFN- 115 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +H + + + P + +N + YKV+T F KA L S L+ Sbjct: 116 -KHNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKL--RKHDSYAYKLKDLSD 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S DY + I + + + Y R+ TSQLS Sbjct: 173 LFVKSQQKLNQDYSKFGLSESKAI------KKWNDYIDQDIQNYETNREYLPEVLTSQLS 226 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 L+ G++ +Q +L E + + + ++ EL++REFY LM YP+ + Sbjct: 227 IILAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTAH-EA 281 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 F I+W + ++W +G+TGFPI+DAAM +LN G+MHNR+RM+ + FL KDL Sbjct: 282 FNEKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTKDLF 341 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 +DW GE+YF +L+D D ASN GWQW+ASTG D+VPYFR+FNP+ Q +RFD +I+ Sbjct: 342 IDWTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDALYIK 401 Query: 427 HWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAA 477 ++P+LN+V + +H P + + + L +YP P+VDHK+A H ++ + Sbjct: 402 TFIPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMSVFKQI 457 >gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122] Length = 431 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 105/430 (24%), Positives = 168/430 (39%), Gaps = 24/430 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF------IATPEQWRQHGISARQSHFIY 62 + L W NDLR+TDN L+ A D ++I ++ + Q A ++ F+ Sbjct: 5 IGLYWFTNDLRLTDNPLLHKASKEVD-QLICLYTRPQLTCFLQKYSCQERWGAARTLFLN 63 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL + +SL G L + V+ L+ N+ +E + Sbjct: 64 QSLRNLSESLDDVGQQLTVVDEPTIG----TLSDLVTKHEVSDLYCNQFAGFDEQSVIEQ 119 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 L + +I ++ + + + LV+ V Sbjct: 120 LGRNFSDLIIHQNSSNHLYSEEQLPFALNGLPNTFTK------FRKLVEGISLRELVEVP 173 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQ 240 RL P+ Q F GE + ++ K + R+ Sbjct: 174 RLPPPIKSVGRGVQIPAEKQMQSVEFLGGEVFGMDHCLRYFSTKRASEYKLTRNGLDGPS 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G +SPRQ L++ + + EL+WREF+ + Sbjct: 234 YSTKFSPWLAHGCISPRQVLEVLRDY--EQKNGANESTYWIFFELLWREFFYWYARRWGK 291 Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I K + S W +G T FPI++A M QL G+M NR R + A Sbjct: 292 NLFLYSGIKTCSKPAAKGTSVSTAFSNWIEGKTDFPIVNACMNQLRKTGFMSNRGRQLVA 351 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L+ +L +DWR G YF +QL+D D+ SN G WQ+ A G D+ P R FN Q + + Sbjct: 352 SCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGVGADTQPA-RQFNLGKQTEIY 410 Query: 419 DPQGTFIRHW 428 DP+ FI W Sbjct: 411 DPKREFIMQW 420 >gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis] Length = 691 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 110/577 (19%), Positives = 183/577 (31%), Gaps = 113/577 (19%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA + ++ + + + F+ V + Sbjct: 7 IYWFRTDLRLHDSPALKAALDLKPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQNDVSE 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S+++ + ++ L ++T L + + + RD+ + Sbjct: 67 SITKLNQKSKLFVLREP----AVTLLPKLFKAWKITHLVFEKDTDAYARERDEKVMHMAG 122 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185 + P I+ + + + + + + ++ Sbjct: 123 EAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQLQHAGNKIGEIEEPVETPTSLPDPGE 182 Query: 186 ---------------------------------GPVTPSNIPRFFDYPFQAIDPMFPIGE 212 GP + P + A GE Sbjct: 183 MKLEIEHTEPEAEPDINAKHREKDTVTFSSGIAGPKGDFSPPTLEELGMPAATSPHKGGE 242 Query: 213 QNALHILRKFCKEKVYYYVEQRDI-----PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-- 265 L L + K++ Y Q+ Q T SPYL G LS R ++R+ E Sbjct: 243 SVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLTSPYLHFGALSCRYFYHRVAEIV 302 Query: 266 -EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--- 321 + S S +L++R+ Y A I W+ S Sbjct: 303 AKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQFGQTLGNSHCRFIPWHLPSKVDM 362 Query: 322 ----------------------------------------LLQAWKQGYTGFPIIDAAMR 341 LQ W G TGFP ID MR Sbjct: 363 SSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEETELWLQRWTHGTTGFPWIDVIMR 422 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + + W G E F L+D + A N G WQW + T Sbjct: 423 QLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEELLIDHESACNIGNWQWLSCTAF 482 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------- 451 + ++R ++P GK++D G FIR ++PEL + P +YI+ PH + Sbjct: 483 FAQ-FYRCYSPVAFGKKWDENGDFIRKFVPELAHFPKKYIYEPHKAPLADQKKAGVRVDG 541 Query: 452 -----LSLN----YPLPIVDHKKACHHTLNQYYAAKK 479 + YP P+ D + L AA + Sbjct: 542 DGSETKGKDGLALYPKPMFDFNERREICLRGMKAAYR 578 >gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis subsp. hominis C80] Length = 457 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 218/479 (45%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N DA I E + + G +++++ Y +L Sbjct: 1 MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I S +C + + ++ Y L Sbjct: 59 KFLYKLKEHHIEPYVIDYSELG-------MFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ D AL+ + + + Y + R+ TS Sbjct: 172 NKCSQSQQTITNDYHHDGQSED--------QALNNWKDYLNHSIQNYKKDREYLPEILTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEENES----NYESFIREVMFREFYYVLMAQYPHIAH 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 280 -EAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P ++VP + +H P L +YP PIVDHK A H + + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFKNI 457 >gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238] Length = 322 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 118/286 (41%), Gaps = 14/286 (4%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLK 264 M G + A+ LR F + Y+ P S+LS +L+ G LS R+ + Sbjct: 1 MQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIV 60 Query: 265 EEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 + L ++ + L WR + + P + + + Sbjct: 61 KRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETHCMHPAFEGLRVGEHND 120 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 QAW G TG+P +DA MR L GW+ R+R + SF L +DWR+ E+ Sbjct: 121 LHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARLF 180 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 D + + Q +G + R++NP Q DP+GTFIR W+PEL +VP ++I Sbjct: 181 TDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEFI 238 Query: 441 HAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 H P W L +YP P+VD + Q A +K Sbjct: 239 HEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 284 >gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC 13177] Length = 302 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 20 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 79 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 80 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 137 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 138 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 197 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 198 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 257 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 258 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302 >gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15] Length = 505 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 92/487 (18%), Positives = 166/487 (34%), Gaps = 21/487 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + + L+ +LR+ D+ Y A V+ ++I P RQ I + +FI+ +L Sbjct: 1 MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + + G +++ LD + ++ +++ ++ Sbjct: 61 ELSQEIRSIGGKLL----ELVGEAVPTLDVIHQIAPIARICTHQETTQGVQYERDKAVRK 116 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 R K + + + + + A Sbjct: 117 WCSRNSVKLVEFQQDGVVRAGCRDQKKQTFPEYFADSVNRELKDPGGIDLGVRFASTPLP 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 IPR Y + Y + A +G S++S Sbjct: 177 SAPRVTIPRAQGYDRPFRQRGGRSEAEKLFKDFFSVGSINSYPFKLSSPNTAWEGCSRIS 236 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------SWLNELIWREFYRHLMAFY 298 YLS G++S R + + + AF +L+ L+WR Y + Sbjct: 237 AYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLMWRRNYLQMFEDD 296 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P++ + +++ L +AW+ G TGFP IDA +R L GW++ R R Sbjct: 297 PTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKETGWLNMRGRAAIT 356 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 SF +L D + + LD + Q + T ++ P Q Sbjct: 357 SFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGT-ASPQNGIMVYCPMKQALDH 415 Query: 419 DPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472 D G FIR ++PEL+++ +IH S L + L YP PIVDH Sbjct: 416 DKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSDLARRSGFLPYPAPIVDHIATARVAKK 475 Query: 473 QYYAAKK 479 + +K Sbjct: 476 RVSYLQK 482 >gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119] Length = 457 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 218/479 (45%), Gaps = 30/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N DA I E + + G +++++ Y +L Sbjct: 1 MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I S +C + + ++ Y L Sbjct: 59 KFLYKLKEHHIEPYVIDYSELG-------MFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + H + + + + P + +N Q YKV+T F KA L Q + I Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + + Q+ D AL+ + + + Y + R+ TS Sbjct: 172 NKCSQSQQKITNDYHHDGQSED--------QALNNWKDYLNHSIQNYKKDREYLPEILTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G++ +Q L E + + S++ E+++REFY LMA YP + Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKENES----NYESFIREVMFREFYYVLMAQYPHIAH 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F I+W+ + W +G TGFPIIDAAM +LN G+MHNR+RM+ + FL K Sbjct: 280 -EAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE+YF +L+D D ASN GWQW+AS G D+VPYFR+FNP Q +RFD Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398 Query: 424 FIRHWLPELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P ++VP + +H P L +YP PIVDHK A H + + Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFKNI 457 >gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37] gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas ingrahamii 37] Length = 448 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 97/433 (22%), Positives = 162/433 (37%), Gaps = 20/433 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61 M L W+ DLRI DN AL A + +++ V++ ++ + + F+ Sbjct: 1 MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L +SLS+ G + D++ L C ++T + + E R Sbjct: 59 QGCLEDFNESLSKLGQAMHI----VYGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L +RL I + ++ +K + + +P+ Sbjct: 115 QLNERLPELTIDQVDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLPS 174 Query: 182 IRLTGPVTPSNIPRFFD-----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + T P P + Q + + Y + ++ Sbjct: 175 MFDTLPAPTRFKPEWLPTVSAIKAKQGFEFEGGEQQGLKHLRQYFSSNSPAEYKQVRNNL 234 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + +S+LSP+L+ G +S RQ N L E + S EL+WRE+Y+ + Sbjct: 235 DGWKNSSKLSPWLNSGCISVRQVMNNLAE--FEQQHGKNSSTECLYLELLWREYYQWVHY 292 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + W G T + +++A M +L G++ NR R I Sbjct: 293 KVGAKTYQFKGLAKHRPLTTFYP-ERFNKWCLGNTPYSLVNAFMHELRQTGYLSNRGRQI 351 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 AS LV +L VDWR G +F QL+D D A N G WQ+ A G D R FN Q Sbjct: 352 VASCLVNELSVDWRYGAAWFEEQLIDYDAAVNWGNWQYIAGVGVDPRG-GRHFNIEKQTT 410 Query: 417 RFDPQGTFIRHWL 429 +DP G + W+ Sbjct: 411 LYDPNGDYQAQWI 423 >gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1] Length = 613 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 103/569 (18%), Positives = 177/569 (31%), Gaps = 103/569 (18%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L W R DLR+ D+ AL+AA + + I ++ P + + + F+ Sbjct: 3 PVVLYWHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRTRVGPNRWKFLLECQSD 62 Query: 68 VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-E 124 + + + + + L + ++T L + + + RD+ + Sbjct: 63 LSAAYTTLNPKQRLWVVR----EAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVLR 118 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V L P ++ + + + + + Sbjct: 119 MARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMSIAQVQKAAEKIGDGTPAQPLEAPQSV 178 Query: 185 TGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P + P + D + +E Sbjct: 179 PDPWKWEKMGLDGLGQDVVDARPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDGS 238 Query: 232 EQRDIPA----------------------------------IQGTSQLSPYLSIGVLSPR 257 R Q T+ LSP+L G LS R Sbjct: 239 LARSPHRGGETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVR 298 Query: 258 QCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 + W ++ ++ S + +L++R+ Y A + I Sbjct: 299 KFWWDVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFI 358 Query: 315 EWNKDSH------------------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 +W+ ++ + WK+G TGFP IDA MRQL GW+H Sbjct: 359 DWHLPTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIH 418 Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 + R A FL + V W G E F L+D + A N G WQW + T Y+ + Sbjct: 419 HLGRHSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCT-AFYSQYYHCY 477 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------- 455 +P GK++DP+G F+R + PEL N +YI+ P + Sbjct: 478 SPIAFGKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGDGSGSDDSK 537 Query: 456 ------YPLPIVDHKKACHHTLNQYYAAK 478 YP P+ D + L+ A Sbjct: 538 HEGLAVYPKPMFDFDERRRICLDGMKHAY 566 >gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215] Length = 299 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 17 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 76 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 77 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 134 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 135 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 194 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 195 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 254 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 255 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894] Length = 299 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 17 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQL 76 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 77 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 134 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 135 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 194 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 195 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 254 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 255 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299 >gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152] gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152] Length = 436 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 191/442 (43%), Gaps = 24/442 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55 M+ + L+W RN+LR DN ++ A N D KVIA++ P+ +++ Sbjct: 1 MQKKQN-TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAK 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ ++ +++ L I + FD L + +V ++ +++ Sbjct: 59 FRAQFLLETITDLKQQLKDLNITLL----TYFDAPENQLLNITETYKVDTIYTQKEWTKE 114 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------- 168 E+ +KL+ K + V D L P ++ N+ + V+T FRK L + Sbjct: 115 ELDTNKLVLKTMSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEI 174 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 L+ S + + F A F +KV Sbjct: 175 LIDKHDDSNLIHNPTEIPSLKELGFNDFVMPKKSAFPFKGGETAALERLNYYLFESKKVG 234 Query: 229 YYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 +Y + R+ +++ SP+L+ G LS R + ++K+ + + + ELIW Sbjct: 235 FYKKTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKKYEAEFGSNQ--STYWVIFELIW 292 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R++++++ Y I +WN D + +Q W G T ++A M +L G Sbjct: 293 RDYFKYISLKYGYEIFKIGGI-LERNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETG 351 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 WM NR R AS+ K+LL DWRIG YF S LLD D+ SN G W + A GND P R Sbjct: 352 WMSNRGRQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDR 409 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 FN +Q +R+D F + WL Sbjct: 410 KFNTQLQAERYDANHKFRKLWL 431 >gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083] Length = 321 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 101/269 (37%), Positives = 149/269 (55%), Gaps = 12/269 (4%) Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 GE L + + + Y +++D A TS+LSP+L G LSP + +R + Sbjct: 62 GGETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARRAGG- 120 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 GA +++ +L WR+F+R ++A P+ ++AWK+G Sbjct: 121 ------PGAEAFVRQLAWRDFHRQVLAARPAAAGADYRTQHDRWRSERTAGDDIEAWKEG 174 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 TG+PI+DAAMRQL GWMHNR R++TASFL K L VDWRIG +F+ L+DGDLA+N Sbjct: 175 RTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLANNQ 234 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 WQW A TG D+ P R+ NP Q KR+DP GT++R W+PEL + +H P Sbjct: 235 LNWQWMAGTGTDTRP-NRVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKLRGL 293 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +L+YP P+V+ + L ++ A+ Sbjct: 294 DRAALDYPDPLVELSEG----LARFKRAR 318 >gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 554 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 107/482 (22%), Positives = 169/482 (35%), Gaps = 30/482 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M + +VW R DLR+ D+ AL+ A S+ V+ +FI P + + + +L Sbjct: 1 MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L Q + + L S R + + E R + Sbjct: 59 ALDHELKQLASRLLVR----WGEPAACLLSVVKAYRADAVLAHVDSE----RIVGRVRDA 110 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + ++ + P L + + + + A R L P G Sbjct: 111 RVQGQLQQAGVPLRWIEPPGGLEELVPYPAYRRFWHGVMAAEPLPAPGRLLTPPPA--AG 168 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQ 244 T + +P P G A + + Y Q PA + +S Sbjct: 169 ESTAAAVPSLEALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYWQLSYPAARASSG 228 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS-VCM 303 +SPYL GVLS RQC + + ++ L W + P Sbjct: 229 ISPYLKFGVLSHRQCLRAI-APLRRGDAGRQRSWRQLVSRLRWGAGMAQRFRYLPQLELE 287 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT---IGWMHNRLRMITASF 360 + + + + W++G TGFPI+DA R L ++ R R I ASF Sbjct: 288 PLWRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCLLATGGWRDLNFRSRAIHASF 347 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST--GNDSVPYFRIFNPTIQG-KR 417 L +DWR G ++M LLDGD ++ W A G + RI++P R Sbjct: 348 LTNLCGIDWRYGALHYMRHLLDGDCPIDHYQWAMQAGVTAGGTGA-WTRIYHPGQVAVNR 406 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 DP G FIR WLPEL + + P + L+Y + A L A Sbjct: 407 CDPHGVFIRRWLPELAELTNDQLGLPPAMAAYPPPMLDY-------ETARRDRLRSLEAR 459 Query: 478 KK 479 ++ Sbjct: 460 RQ 461 >gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF] Length = 487 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 175/400 (43%), Gaps = 17/400 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M +V +DLR+ D+ L AA ++ +V+ +F+ P + +A ++ F+ L Sbjct: 1 MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L ++G D + + ++ R L Sbjct: 60 DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115 Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L+ + + LPPG ++ + + V+TP+ + ++ L P Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPL---GAPRKLS 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 S+ + + GE+ L + ++ + Y + D A GTS+ Sbjct: 173 VPSKVRSDGVPRREDVEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS +C +R +GA +++ +L WR+F+ ++A P+ Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAAHE 285 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + H AW++G TG+P++DAAMRQL GWMHNR R++ ASFL K Sbjct: 286 DYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTKT 345 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 L +DWR+G +F+ L+DGDL +N WQW A TG D+ P Sbjct: 346 LYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385 >gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum] Length = 147 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 101/145 (69%), Positives = 119/145 (82%) Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW Sbjct: 1 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454 AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W K ++L Sbjct: 61 AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120 Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479 +YP PIV+HK+A TL Y AA+K Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145 >gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91] Length = 291 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 9 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 68 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 69 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 126 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 127 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 186 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 187 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 246 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 247 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291 >gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae CT 5369-93] Length = 461 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQTIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula] Length = 576 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 160/353 (45%), Gaps = 19/353 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P + + + + + F + + LP I + F+ Sbjct: 30 YEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDES 89 Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + + + G NA L F + Y + R TS LSP+L G +S Sbjct: 90 EKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSV 149 Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 R+ ++ ++ + + + +L + RE+ R+L +P +P + + Sbjct: 150 RKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHP-YSHERPLLGHLK 208 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 W D +AW+QG TG+P++DA MR+L GW+H+R+R++ ASF VK L + WR G Sbjct: 209 FFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWG 268 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 +YF LLD DL S+ GWQ+ T D + RI NP +G +FDP G ++R WLPEL Sbjct: 269 MKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 328 Query: 433 NNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC---HHTLNQYYA 476 +PT +IH P + + +L NYPLPIV A L++ + Sbjct: 329 ARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQ 381 >gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri] Length = 559 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 129/257 (50%), Gaps = 13/257 (5%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 I T+ LSPY+ G +SPR ++ L + +L K S + +L+WRE + +L+A Sbjct: 296 MIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWRE-FYYLVAA 354 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +I W KD L AW+ TGFP IDAAM QL GW+H+ R Sbjct: 355 GTKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAV 414 Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A FL + DL + W G + F L+D D A NNG W W + + YFR+++P K Sbjct: 415 ACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQ-YFRVYSPIAFAK 473 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470 ++D G ++RH+LP L N+P++Y++ P + ++YP PIVDH A Sbjct: 474 KYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRC 533 Query: 471 LN----QYYAAKKQSLL 483 ++ Y A K + + Sbjct: 534 VDDIATAYAAHKDANAV 550 >gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25] gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. Ex25] Length = 444 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 104/428 (24%), Positives = 172/428 (40%), Gaps = 21/428 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHFI 61 + L W NDLR+ DN L AC D ++I ++ TP ++ + + F+ Sbjct: 4 KIGLYWFTNDLRLHDNPLLIDACAEMD-ELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ASL ++ +SL++ G + + + + + +T ++ + +E + + Sbjct: 63 EASLNELNQSLAKLGQRLWTVELTPY----QAIKYAISHFGITHIYADAFAGSDEQQALE 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 K H I + ++L + + + DL Sbjct: 119 RAIKGTPHVNIKQQAIRTLLREEQ-----LPFELRQLPATFTKFRKQVEGLDLSQPYESV 173 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 L + N P Y F H R F Y + R+ ++ Sbjct: 174 HALPPVPSGMNFPTATTYYFDTKPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDGME 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G +SP + LK+ + + EL+WRE++ Y Sbjct: 234 YSTKFSPWLAHGCVSPTIIYAMLKQY--EQKNGANDSTYWIYFELLWREYFYWYARKYQQ 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + + WK+G T FPI++A M QLN G+M NR R + AS Sbjct: 292 KLFRFGGIANQPPLTSFYA-QRFKQWKKGETPFPIVNACMHQLNKTGYMSNRGRQLVASC 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Q + +DP Sbjct: 351 LVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQTYDP 409 Query: 421 QGTFIRHW 428 +FI W Sbjct: 410 DFSFIDKW 417 >gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3] Length = 462 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 105/436 (24%), Positives = 167/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q VT ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P ++ +L A + Sbjct: 112 DERQSIAHIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210] Length = 289 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 7 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 66 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 67 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 124 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 125 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 184 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 185 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 244 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 245 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289 >gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98] Length = 272 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 106/252 (42%), Positives = 140/252 (55%), Gaps = 8/252 (3%) Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +RD P I TS+LSPY+ G LS RQ W+ + ++ +L+EL WREF Sbjct: 23 ERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DAYAHGAATQADLDKFLSELGWREFGW 81 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P + + + W D L AW++G TG+P +DA MR+L GWMHNR Sbjct: 82 TQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNR 140 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 +RM+ ASFLVK LL+DWR GE +F L+D D ASN WQW A G D+ PYFRIFNP Sbjct: 141 VRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPV 200 Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466 QG++FDP G ++R W+PEL +P IH P L YPLPIV H A Sbjct: 201 AQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAA 260 Query: 467 CHHTLNQYYAAK 478 L+ + A + Sbjct: 261 RRRALDAFGAIR 272 >gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51] Length = 461 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112] Length = 288 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 6 WAGGLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQL 65 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + ++ +L+EL WREF + +P + + + W D Sbjct: 66 WHAAA-DAYAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDD 123 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F Sbjct: 124 PAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDT 183 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P Sbjct: 184 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPAT 243 Query: 440 IHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 IH P L YPLPIV H A L+ + A + Sbjct: 244 IHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288 >gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226] Length = 461 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14] Length = 280 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 113/277 (40%), Positives = 150/277 (54%), Gaps = 8/277 (2%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + Sbjct: 6 WRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DA 64 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 ++ +L+EL WREF + +P + + + W D L AW+ Sbjct: 65 YAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWR 123 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D AS Sbjct: 124 RGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAAS 183 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--- 444 N WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P Sbjct: 184 NAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAP 243 Query: 445 ---SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 244 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280 >gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis] Length = 512 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 92/444 (20%), Positives = 163/444 (36%), Gaps = 36/444 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIYASL 65 W R DLR+ D AL AC ++ ++ +++ P ++ SAR++ F+ SL Sbjct: 12 FWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIESL 70 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++ L +G D + C + E + + Sbjct: 71 VNLRRRLEDRGSGLAV----AIGDPAVVIADLCASASAIYVTQGICSEETQDEARVESKM 126 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + + + + +P++ Sbjct: 127 KAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAELTKLPSLPGA 186 Query: 186 GPVTPSNIPRFFDY----------PFQAIDPMFPIGEQNA---------LHILRKFCKEK 226 + F A + P G + + Sbjct: 187 VCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAALTRLQKWIWDDDH 246 Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + Y R+ + +S+ SP+L++G LSPR+ W ++ + + + + EL Sbjct: 247 LREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYEKERVKNK--STYWLVFEL 304 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WR+F+ ++ + K I K W + L WK G TG ++DA M +L Sbjct: 305 MWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKNGKTGDLLVDANMLELLA 364 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 GWM NR R AS+L+ ++ VDWR G +F LLD D SN G W A+ G Sbjct: 365 TGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSNWGNW--VAAAGLTGQ-R 421 Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429 FN Q R+DP +++HWL Sbjct: 422 VNKFNTLYQLDRYDPSREYVKHWL 445 >gi|224032111|gb|ACN35131.1| unknown [Zea mays] Length = 495 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 146/283 (51%), Gaps = 14/283 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--- 264 + G +NA ++L +F + Y E TS LSPYL G LS R + +K Sbjct: 52 WSPGWRNAENMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQ 111 Query: 265 -EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + + +L + +RE+ R+L YP + F+ + W D Sbjct: 112 VKWQNEGKSEAEESVRLFLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRF 170 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK L + W G +YF LLD Sbjct: 171 KSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDA 230 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PEL +PT++IH+P Sbjct: 231 DLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSP 290 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYYAA 477 + +L NYP PIV+ A ++ + Sbjct: 291 WAAPNSILQVAGVELGFNYPKPIVELHMARECLDDAISTMWQL 333 >gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific [Photobacterium damselae subsp. damselae CIP 102761] Length = 436 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 99/427 (23%), Positives = 162/427 (37%), Gaps = 16/427 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 M L +NDLR+ DN AL A D +++ V+ Q + H A + F+ Sbjct: 1 MKTGLYLFQNDLRLHDNLALLNATTQCD-RLLLVYCLPYHQANRYPYHIHNYGALRLQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL Q+ + L + L Q + + + Q E + + Sbjct: 60 LQSLHQLHQQLQDLEQELLVFLEH----PLHILPQLISQYDIHTIISSEQVGYYENQTWQ 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L +R + I + L L L + ++++ L Sbjct: 116 TLNQR--YPYIEFKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIELTPLTPYISHL 173 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + +I F + D + + + Y + D+ Sbjct: 174 PPSPNKIAHISILDSFISHPKPSDFIGGEATAISHLTAYFKSDKASRYKETRNDLDGWDY 233 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +++ SP+L+ G LS ++ L + + P + EL+WRE+++ + Sbjct: 234 STKFSPWLAQGCLSAKRVIYELNQYHHQVDETP--SSQWIKFELLWREYFQWYAHHHQQK 291 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 I + + W + T +P+++A MRQL T G+M NR R I AS Sbjct: 292 IFQFKGIKSSSPHTSFYP-ERFKRWSESNTPYPLVNALMRQLITTGYMSNRGRQIVASCF 350 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 V +L +DWR G +F L+D D+ASN G WQ+ A G D R FN Q + FDPQ Sbjct: 351 VNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKG-NRHFNLDKQTELFDPQ 409 Query: 422 GTFIRHW 428 G FI W Sbjct: 410 GQFITKW 416 >gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326] Length = 417 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 103/430 (23%), Positives = 178/430 (41%), Gaps = 21/430 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGISARQSHFI 61 L W NDLR+ DN L A D ++I V++ TP + Q + A + F+ Sbjct: 3 KTGLYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFV 61 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + SL+++G + + + L S Q VT L+ NR +E ++ Sbjct: 62 DQALQDLNHSLAKQGQRLAVIHQT----AEQTLPSLIEQYNVTHLYVNRCAGWDETKQMH 117 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+++ + + +S+ L P + ++ +P Sbjct: 118 TLKQQFPYLKVVSLSVNSLFQESQ------LPFTLAQLPATFTRFRKCMEPVNTRDLLPV 171 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L P +D + +Y + + Sbjct: 172 SELPSTPLPPEERSQPHQADPRVDYLGGETAGQQHCQWYFSHDFASHYKQTRNGLVGKSY 231 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 +++ SP+L++G LSP Q ++ ++ + + EL+WRE++ + ++ Sbjct: 232 STKFSPWLALGCLSPAQLVAYIQRYEHEIGANE--STYWIVFELLWREYFYWYAMKHGAL 289 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + I + + S W +G T F I++A M+QL+ G++ NR R + AS L Sbjct: 290 LFARSGITASTVTKPLDQSKFH-RWTKGETDFAIVNACMKQLHATGYLSNRGRQLAASCL 348 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + +L +DWR G YF +QL+D D+ASN G WQ+ A G D P R FN Q + +DP Sbjct: 349 IHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNP-SRRFNLDKQTQMYDPH 407 Query: 422 GTFIRHWLPE 431 FI WL E Sbjct: 408 RQFITRWLGE 417 >gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39] Length = 461 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQAAQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587] Length = 462 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P ++ +L A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80] gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457] gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33] gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395] gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2] gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395] gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC9] gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae B33] gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae BX 330286] gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae MJ-1236] gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10] gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholera CIRS 101] gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae RC27] Length = 461 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETISLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPHV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581] gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma conjunctivae] Length = 434 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 217/475 (45%), Gaps = 52/475 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQW--RQHGISARQSHFIYASL 65 +++ D+R+ DN L ++ + I +F I +Q + S + F+ +L Sbjct: 1 MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + + K + I Y + + IE + ++ +++ N+ + + RDK L++ Sbjct: 61 INLSK---KVNINLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112 Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 Q + +I K F+D +L PG ILN++ YKV+TPF + LV+ +P ++ Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVE------NLPTVKK 166 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T F F N++ + + K ++ Y + R+ AI Sbjct: 167 TLHFYTQIYKNSKSCSFLQEFKYFQTFFPNSIDQILEILKNNIHDYAKNRNNLAIDSNK- 225 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA--FYPSVC 302 +SP + G++S RQ + +E ++ + +LIWREFY H + Sbjct: 226 ISPAIRFGIISIRQLLLYVYQETKNIN-------HELIRQLIWREFYYHFNFLASQTNWN 278 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G P+ +E+N+ L+ WK+G TGFP+IDAA+++L G+MHNR RM+ ASFL Sbjct: 279 FGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVASFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L +DW GE++F L+D D N+ WQW A G D+ + RIFNP +Q K+FD Sbjct: 339 KNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFDSNN 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYA 476 +I +LP NY PIVD + + + Sbjct: 399 YYISKFLP-----------------------TNYQTKPIVDLHETSNKIKKVFQD 430 >gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 462 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 103/428 (24%), Positives = 168/428 (39%), Gaps = 21/428 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61 ++ L W NDLR+ DN L A D +I ++ + ++ + F+ Sbjct: 16 TIGLYWFTNDLRLHDNPLLLRASAEVDL-LICIYCYPKVSSYLKQYAQEPEFGFAKQQFL 74 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + SL+ Q + + + + VT L+ + +E Sbjct: 75 DESLHCLNLSLNALNQRLQVVDLHPY----QAIKHAADKLGVTHLYADAVAGSDEQDVVD 130 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 ++ H + +S S+ + + +T FRK + + + + ++ Sbjct: 131 NIQAEAPHLAVIQSEVRSLFC-VEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRLP 189 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 G P+ P H + F Y + R+ + Sbjct: 190 ALPDGLALPTLSLTRDVQPSLFTGGERAG----LEHCRQYFASTLASEYKQTRNGLDGMD 245 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G LSP+ + LK + + EL+WRE++ Y Sbjct: 246 YSTKFSPWLAHGCLSPKTIYAMLKRY--EAANGANDSTYWIYFELLWREYFYWYARRYKR 303 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + Q WK+G T FPI++A M QLN G+M NR R + AS Sbjct: 304 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 362 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV +L ++WR G YF SQL+D D+ASN G WQ+ A G D R FN Q + +DP Sbjct: 363 LVHELGLEWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDP 421 Query: 421 QGTFIRHW 428 FI W Sbjct: 422 HMEFIDRW 429 >gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae INDRE 91/1] Length = 461 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 108/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q S Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWS 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETISLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPHV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 311 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 111/284 (39%), Positives = 146/284 (51%), Gaps = 8/284 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 29 WAGGLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQI 88 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W + +L+EL WREF + +P + + + W D Sbjct: 89 WQAAVDAHAHRAATQA-DLDKFLSELGWREFCWAQLYRFPDLPRRN-LRHTLDGMPWRDD 146 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F Sbjct: 147 PAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDT 206 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P Sbjct: 207 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAA 266 Query: 440 IHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IH L YP+P+V H A L+ + A Sbjct: 267 IHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7] Length = 436 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 104/425 (24%), Positives = 179/425 (42%), Gaps = 21/425 (4%) Query: 11 LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64 L WL+NDLR+ DN A V VF+ P ++ + F+ S Sbjct: 6 LYWLKNDLRLNDNPIFSKLALQQCALDV--VFVINPNWFKNTNYQQKQYGENKYTFLMQS 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q++L +G + + + L +Q + ++ Y+ Q+ + E R LL+ Sbjct: 64 LYELQQALIARGQTLHVLE----GEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + + K +TPF+K + + L + + Sbjct: 120 AHCPQIQ-FTGTLQDTLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTELLPK 178 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243 + N + P + M H + F E Y R+ T+ Sbjct: 179 PITLCAKNP---IELPKAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNALDGFDNTT 235 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + SP+L+ G +S +Q +N +++ + + EL+WRE+++ S Sbjct: 236 KFSPWLAFGCISAKQIYNAVEQY--EQTYTANDSTYWIKFELLWREYFKWHALNVQSSLF 293 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 T+ + + AW QG T +P+++A M++LN G++ NR R I AS LV Sbjct: 294 SFKGQKQTKPLTTFMPN-RFAAWCQGTTPYPLVNAIMKELNATGFITNRSRQIVASCLVN 352 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q ++FDP+ Sbjct: 353 ELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTQQFDPKSI 411 Query: 424 FIRHW 428 + + W Sbjct: 412 YTKKW 416 >gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TMA 21] Length = 462 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTLLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P ++ +L A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFAIEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio cholerae LMA3894-4] Length = 462 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P ++ +L A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAILQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKLGDTPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 311 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 111/284 (39%), Positives = 147/284 (51%), Gaps = 8/284 (2%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + + GE A +LR F ++ Y +RD P I TS+LSPY+ G LS RQ Sbjct: 29 WAGGLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQI 88 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 W+ + +L+EL WREF + +P + + + W D Sbjct: 89 WHAAVDAHAHRAATQA-DLDKFLSELGWREFCWAQLYRFPDLPRRN-LRHTLDGMPWRDD 146 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AW++G TG+P +DA MR+L GWMHNR RM+ ASFLVK LL+DWR GE +F Sbjct: 147 PAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDT 206 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 L+D D ASN WQW A G D+ PYFRIFNP QGK+FDP G ++R W+PEL +P Sbjct: 207 LVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAA 266 Query: 440 IHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 IH L YP+P+V H A L+ + A Sbjct: 267 IHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310 >gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED133] Length = 457 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 131/479 (27%), Positives = 214/479 (44%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLL 123 + +SL + + + S + + S+C + ++++ + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVVAGDIMSYHLEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + Q + + +N + YKV+T F K L D+ + + Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P+N+ + + + + ++F + + Y R+ TS Sbjct: 171 DIVIAAPNNL--------KDVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2143] Length = 444 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 93/428 (21%), Positives = 158/428 (36%), Gaps = 12/428 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62 V L W +DLRI DN L A D +I ++ A P + +S R+ F++ Sbjct: 3 KVGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLF 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ L++ G + + + + + K Sbjct: 62 ESLQDLEAQLNRHGQKLVVRIQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTILRKR 121 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + + LP + + + + + +P Sbjct: 122 YGMLTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTPTSLPKP 181 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQ 240 L + + +F G L + + + R+ + Sbjct: 182 ALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRNGLDGMD 241 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G LS R +L+ + + L EL+WRE+++ Y Sbjct: 242 YSTKFSPWLANGSLSTRHIVRQLQ--GYEERAGANDSTYWILFELLWREYFQWYGHKYQQ 299 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + I + W G T + II+A MRQLN G++ NR R + AS Sbjct: 300 RLFTFSGIGNSTPITSFYP-ERFKKWCVGNTPYAIINACMRQLNATGYLSNRGRQLAASC 358 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 V +L +DWR G YF QL+D D+ASN G WQ+ A G D + R F+ Q + +DP Sbjct: 359 FVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPRGH-RHFDLQKQAQIYDP 417 Query: 421 QGTFIRHW 428 F+ W Sbjct: 418 DNHFVHRW 425 >gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9] Length = 279 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 113/277 (40%), Positives = 150/277 (54%), Gaps = 8/277 (2%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + GE A LR F ++ Y +RD P I TS+LSPY+ G LS RQ W+ + Sbjct: 5 WRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAA-DA 63 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 ++ +L+EL WREF + +P + + + W D L AW+ Sbjct: 64 YAHGAATQADLDKFLSELGWREFGWTQLHHFPDLPRRN-LRHTLDGMPWRDDPAALAAWR 122 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 +G TG+P +DA MR+L GWMHNR+RM+ ASFLVK LL+DWR GE +F L+D D AS Sbjct: 123 RGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAAS 182 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--- 444 N WQW A G D+ PYFRIFNP QG++FDP G ++R W+PEL +P IH P Sbjct: 183 NAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAP 242 Query: 445 ---SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L YPLPIV H A L+ + A + Sbjct: 243 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279 >gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385] Length = 462 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLFPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P ++ +L A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYTMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae 12129(1)] Length = 461 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSCVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRRFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPEGEFVAKWC 418 >gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii str. 'Deep ecotype'] Length = 478 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 90/455 (19%), Positives = 167/455 (36%), Gaps = 33/455 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + T + ++WL+ DLR+ D++ L+ A S+ +++ ++ P + +S R HF Sbjct: 2 LSDNTKPPITIIWLKRDLRLRDHEPLFRAV-ASNERILLLYCWEPSLIEEPHMSVRHWHF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-------------- 106 I S+ + L + V H + D++ ++ + V Sbjct: 61 IQQSIDDINGQLPEHVNVLTLHMEAV--DALAFISRFYTINAVRSYQEIGLKVTYNRDLR 118 Query: 107 ---FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 N + + + + L HR K+ + + + + Sbjct: 119 VANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAESTYDYDLKRANWVKWNVHVD 178 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 +L +++ +L + + M P GE+ A +L+ F Sbjct: 179 IQKASLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQVLKDFF 238 Query: 224 KEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 ++ YY + P S+LSPYL+ G +S +Q + ++ + P W Sbjct: 239 NDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIHEKKRW 298 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---------LQAWKQGYTG 332 L H + + I W ++ W G TG Sbjct: 299 SRALSALTSRLHWHCHFIQKFESEHSIEWRPMNSAYENFPYIDGPEAERRFYHWSIGQTG 358 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR L G+++ R+R + SFL L V W Y +Q LD + + Sbjct: 359 YPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDFEPGIHYPQI 418 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 Q AS + R++NP Q K+ DP+G FI+ Sbjct: 419 QMQAS--VTGIHTVRLYNPASQSKKLDPEGEFIKK 451 >gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11] Length = 457 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 216/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLEHDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp. RC341] Length = 461 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALRSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I ++ + + WK G T PI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFHFSGIGE-KQPLTSFYAQRFLQWKHGETPVPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRD-SRQFNLAK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52] Length = 462 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 168/436 (38%), Gaps = 24/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNTLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLNHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVVGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + +I + S+L P ++ +L A + Sbjct: 112 DERQAIARIHQDFPSVLIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSAPI 171 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 172 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETR 227 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 228 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 285 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 286 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 344 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 345 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 403 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 404 QAHTYDPKGEFVAKWC 419 >gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus D139] gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus H19] Length = 457 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 214/479 (44%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLL 123 + +SL+++ + + + S+C ++ ++++ + Sbjct: 58 RFYQSLNKENLTPYVMSY-------DAVISFCEEKNISEVVVAGDIMSYHLEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + Q + + +N + YKV+T F K L D+ + + Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P+N+ + + + + ++F + + Y R+ TS Sbjct: 171 DIVIAAPNNL--------KDVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLARYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D SN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46] Length = 457 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 31/478 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R N D FI E S ++ + +L Sbjct: 1 MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLEHDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL K Sbjct: 279 -QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455 >gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae bv. albensis VL426] Length = 461 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 108/436 (24%), Positives = 173/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q S Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWS 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKWFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QTHTYDPKGEFVAKWC 418 >gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W1] Length = 457 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 139/480 (28%), Positives = 228/480 (47%), Gaps = 33/480 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M V ++ L R+ +N N + FI E++ + + ++++ Y +L Sbjct: 1 MKVGVI-LNRVFRLENNPLFEYISQNKEDIDQCYFIIPQEKFDKE--AEMKANYYYGTLQ 57 Query: 67 QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L I F + L +C + ++++ + +L++ Sbjct: 58 KFVDTLHDYDIQPFLVDY--------DELTHFCKDKGISEVVLAGDIMSYHEEKYDILQQ 109 Query: 126 ---RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + S + P N+ + YKV+T F K L++ + S + I Sbjct: 110 SASFKNEGISVVSVRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDI 169 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + + I E +A + F + + Y R+ T Sbjct: 170 AK--------MGVKSQQKVKGDYSQYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLT 221 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLS YL+ GVL Q +N L E + + S++ ELI+REFY LM +YP Sbjct: 222 SQLSIYLAYGVLDIIQIFNDLLENYDK----DEQNYESFIRELIFREFYYVLMTYYPETA 277 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F ++W+ + WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL Sbjct: 278 H-QSFKDKYRDLQWSYNKENFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLT 336 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 KDL +DW GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 337 KDLFIDWTWGEEYFRQKLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDA 396 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++ LN++ +Y+H H + + +L +YP IV+H ++ H ++++ A Sbjct: 397 LYIKKFVQTLNDIDAKYLHDTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKAL 456 >gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus subsp. aureus ST398] Length = 457 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 132/479 (27%), Positives = 218/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H H + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456 >gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis] Length = 501 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 104/433 (24%), Positives = 170/433 (39%), Gaps = 30/433 (6%) Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + V++L + E RD ++ K + Sbjct: 2 SLRTLNSRLFVVR----GQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEA 57 Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++S I+ + +A+I + + V ++ Sbjct: 58 GVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQMEACRA 117 Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 Y +++ ++P GE AL L + + K + +R Sbjct: 118 EIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAWVANYERPRMN 177 Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 + LSPYL G LS + + RL+E + + S +L+WREF+ Sbjct: 178 ANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPL-SLFGQLLWREFFYTA 236 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P + P +I W+K+ L W +G TGFP IDA M QL GW+H+ R Sbjct: 237 ATNNPKFDQME-GNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 295 Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 A FL + DL W G + F LLD D + N G W W + + +F + P Sbjct: 296 HAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVG 354 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467 G+R DP G FIR +LP L P++YI+ P S + K + ++YP PIV+H +A Sbjct: 355 FGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPIVNHAEAS 414 Query: 468 HHTLNQYYAAKKQ 480 + + +Q Sbjct: 415 SMNIERMKQTYQQ 427 >gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group] Length = 433 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R+L Sbjct: 26 TSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCFN 85 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +P K + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I Sbjct: 86 FP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 144 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +SF VK LL+ W G +YF LLD DL S+ GWQ+ + + D R+ NP +QG++ Sbjct: 145 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQK 204 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH--- 468 +DP G ++R W+PEL +PT++IH P +L NYP PIVD A Sbjct: 205 YDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLD 264 Query: 469 HTLNQYYAA 477 +++ + Sbjct: 265 DSISTMWQL 273 >gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122] gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122] Length = 459 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 131/480 (27%), Positives = 215/480 (44%), Gaps = 31/480 (6%) Query: 7 MSVHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M + + V L R N D FI E S ++ F +L Sbjct: 1 MFMAIAVLLNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTL 58 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 59 QRFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQ 111 Query: 126 ---RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + R+ + +N + YKV+T F K L D+ + + Sbjct: 112 RSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNEL 171 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 P+N+ + + + + ++F + + Y R+ T Sbjct: 172 IDIVIAAPNNL--------KDVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEILT 223 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 SQLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 224 SQLSIALAYGLLDIIEIFNDLLSRYEEDES----NYEAFIRELIFREFYYVLMTQYPESA 279 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + F P I W+++ +AW G TGFPIIDAAM +L G+MHNR+RM+ + FL Sbjct: 280 H-QSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLT 338 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K+L ++W GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 339 KNLFINWTWGEDFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKA 398 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP LN + +Y+H H + +L +YP IVDH++ L + Sbjct: 399 LYIKTYLPVLNQIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKTL 458 >gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3] Length = 438 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 103/423 (24%), Positives = 166/423 (39%), Gaps = 19/423 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYASLL 66 + W RNDLR+ D+ L A + +++ V++ P Q G+ ++ FI SL Sbjct: 7 AIYWFRNDLRLHDHPGLVA--AAAADELLLVYLW-PRQRAWCNTQGLGEQRERFICESLT 63 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ K L G Q + V + ++ E R ++L +R Sbjct: 64 ELAKDLQPLGQKLLVLQ----GSPELVIPDLVRDYGVNAIHTSQCAGSYETRALRVLRER 119 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+ + + L L ++PFR+ + + L A S +P + Sbjct: 120 LDIPVLEHGGNSLFQEKDVAALCPELL--DSFSPFRRKVEKQLT-AVEPSRNLPQLPAPP 176 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQL 245 V +IP P + + + + Y E R+ +G+S L Sbjct: 177 AVQFHSIPPARTKPPLGLPLRG-GSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEGSSTL 235 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+LS+G +S R+ + + + + EL+WRE++ + Sbjct: 236 SPWLSLGSISAREIAAAIAQHEAEQGANE--STYWLYFELLWREYFFWRALRDGVNLF-R 292 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + W G T P+++A M QL GWM NR R I AS L+ D Sbjct: 293 HGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIHDF 352 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR G +F L+D D+ SN G WQ+ A G D R FN Q ++DP G F Sbjct: 353 GIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDPDGVFT 411 Query: 426 RHW 428 W Sbjct: 412 HKW 414 >gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2080] Length = 433 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 113/422 (26%), Positives = 175/422 (41%), Gaps = 17/422 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQH-GISARQSHFIYASLLQ 67 HL W RNDLR+ DN A+ A H + ++ V++ P W G+ A++ F+ SL + Sbjct: 3 HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+++G + L + +T++ E + L+++L Sbjct: 61 LHLQLAEQGQALMVLE----GSPELVLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKL 116 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + + L P + + KV++ FR+A+ + V+ S V Sbjct: 117 P--VPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-QGTSQLS 246 + G + + Y E R+ G+S LS Sbjct: 175 FDAIPPADISKPTMLPLPGGRSAGLRRLRQFVFDDRSITQY--KETRNCLDALDGSSTLS 232 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L+ G LS R+ + + + L + EL+WREF+ H A M K Sbjct: 233 PWLANGNLSVREVAHEVFRFERENLSNE--STYWLFFELLWREFF-HWRAVVDDAQMFKI 289 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + D W G T FP+++A MRQL GWM NR R I AS L+ +L Sbjct: 290 GGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQIAASCLINELK 349 Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 VDWR G +F L+D D+ SN G WQ+ A G+D R FN Q ++DPQG F Sbjct: 350 VDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRG-GRHFNIDKQAGQWDPQGVFTA 408 Query: 427 HW 428 W Sbjct: 409 KW 410 >gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5] Length = 432 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 100/436 (22%), Positives = 185/436 (42%), Gaps = 24/436 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61 M LVW RN+LR DN +L A S +VI ++ P Q++ + ++ F+ Sbjct: 1 MDTALVWFRNNLRTQDNSSLTHAI-ASGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++K+L+ I + Q V++++ +++ E Sbjct: 60 IETVQNLKKNLNDLNITLIVTHEH----PEVTIPDLIDQHDVSEIYSQKEWTREENEVTI 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPV 179 +E+++ + +D + P + N + +V+T FRK + + + + + Sbjct: 116 AVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRLQEKIKTL 175 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ------NALHILRKFCKEKVYYYVEQ 233 P+ L + + D + +K+ YY + Sbjct: 176 PSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQYYKKT 235 Query: 234 RDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ +S+LS +L+ G +S RQ + +K+ + I + + ELIWR++++ Sbjct: 236 RNGLVGEDYSSKLSAWLANGSISARQIYWEVKK--FEKEIISNQDTYWLIFELIWRDYFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + + I + +W ++ + W G T + ++A M +L GWM NR Sbjct: 294 YVSLKHGNDLFKIGGI-LHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELKETGWMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASF K+ DWR+G YF S L+D D+ SN W + A GND P R FN Sbjct: 353 GRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHW 428 Q + +D G F+R W Sbjct: 411 RQQEMYDGNGKFVRLW 426 >gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi] gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi] Length = 528 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 190/460 (41%), Gaps = 41/460 (8%) Query: 12 VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 +W RNDLRI DN+ALY A + + ++ ++I Q + F Sbjct: 34 IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFDKSQSQLPSP------F-------- 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDS----YCLQQRVTKLFYNRQYEINEVRRDKLLE 124 S+S+ F + + + + + + T + N + + + Sbjct: 80 --SISKIPNSFTLFEQNFEKEIENICNRNNINFIKKWSSTLIHKNDLPYTDLPNQIPKVF 137 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + ++ + + + I + + + + + + Sbjct: 138 SAFRKKIEKAIDEKDIEIECYEIEKEDYEELLLSEEEINKIHSQFSKNSNLITKLENVNE 197 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + GE AL + + + K+ Y R+ Sbjct: 198 FMKEYLYPDMEKTQFDNEIKYDQRSVVKFIGGEDKALKRCKFYIENKLKNYSTTRNGNIG 257 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++LSP+L+ G +S R + +++ + A ++EL+WR+FY++L Sbjct: 258 DYSTKLSPWLANGCISSRYIYTEIQKNSNEKSKS---SANILVSELLWRDFYKYLAWKMG 314 Query: 300 SVCMG-------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + K E + Q W +G TG+P +DA MR+L G+M+NR Sbjct: 315 NSFFYEKALQPNKELDYEWEVPLNEYKNERFQQWCKGKTGYPFVDACMRELLNTGFMNNR 374 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGGWQWAASTGNDSVPYFRIFNP 411 RM+ ASFL+KD+ +DWR+G EYF QLLD D SN G W W+A G D P R FNP Sbjct: 375 GRMVVASFLIKDMKIDWRMGAEYFERQLLDSTDSCSNYGNWAWSAGIGCDFRP--RYFNP 432 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451 QG D G FI+ W+ EL +VP++ IH P+ LD+++ Sbjct: 433 IKQGLDHDKNGEFIKIWIHELASVPSKSIHLPYITLDEDE 472 >gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134] Length = 432 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 104/439 (23%), Positives = 185/439 (42%), Gaps = 24/439 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61 M LVW RN+LR+ DN +L AA +V+ V+ P + + + ++ F+ Sbjct: 1 MDTALVWFRNNLRVQDNASLTAAIATGK-RVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 ++ ++ +L ++ I + E + S +VT L +++ EV+ Sbjct: 60 IETIENLKANLDKRNITLLVYNL----KPEEHITSVVKSYKVTSLHSQKEWTAEEVKVTN 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E+ + +D + P N ++ K++T FRK + + Sbjct: 116 AVERAIPEVSHELVYDQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTAL 175 Query: 182 IRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233 + T + I + GE A L + YY + Sbjct: 176 PQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQKLAYYKKT 235 Query: 234 RDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ + +S+LS +L+ G +S RQ + ++K ++ + + ELIWR++++ Sbjct: 236 RNGLIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEVKKNQ--DTYWLIFELIWRDYFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + I ++ +W ++ + W G T + ++A M +L GWM NR Sbjct: 294 YVSLKHGDNIFKIGGI-LNKEYDWKHNNKAQREWINGNTKYDFVNANMIELKETGWMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R ASF K+ DWR+G YF S L+D D+ SN G W + A GND P R FN Sbjct: 353 GRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHWLPE 431 Q +D G ++R W E Sbjct: 411 RQQDMYDGSGKYVRLWTQE 429 >gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147] Length = 254 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 103/256 (40%), Positives = 135/256 (52%), Gaps = 9/256 (3%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y RD P TS+LSP++ G LS RQ W+ + ++ EL WRE Sbjct: 1 YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQA-DLDTFCRELGWRE 59 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + +P + + + W D L AW++G TG+P++DA MR+L GWM Sbjct: 60 FCYGQLYRFPDLARRN-LRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR RM+ ASFLVK LL+DWR G+ +F L+D D ASN WQW A G D+ PYFRIF Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPH------SWLDKNDLSLNYPLPIVD 462 NP QGK+FDP G ++R W+PEL +P IH P L YPLPIV Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEPWAAPAARLAAAGVRLGDTYPLPIVA 238 Query: 463 HKKACHHTLNQYYAAK 478 H A L+ + + Sbjct: 239 HDAARKRALDAWVTVR 254 >gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2] Length = 461 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 172/436 (39%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +L + SLS G + + L Q +T ++ + Sbjct: 56 EAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKLLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G + R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRG-SRQFNLAK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2] Length = 447 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 107/456 (23%), Positives = 171/456 (37%), Gaps = 34/456 (7%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 MS L W R DLR+ DN+ AC +DA ++ V+I P +W I + + Sbjct: 1 MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L + + L Q+G Q ++ L + Q + ++ E Sbjct: 60 GQALRGLDRQLRQRGSGLCLLQ----GQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115 Query: 122 LLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ L+ + + P + ++ +TPFRK + Q V + Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEHPYPAPD 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI- 239 A+ P V QR + Sbjct: 176 AVPPWPESVPYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQYF 235 Query: 240 ------------------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 +S+ SP+L++GVLS RQ + + + G + Sbjct: 236 ARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQARGANEGTYWL 293 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 EL+WR+++R L Y + + + WK TG IDAAM Sbjct: 294 RFELLWRDYFRFLHLKYGRRLYHARGLAPDRPAPTHDA-DRFERWKNADTGHAFIDAAMT 352 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L+ G++ NR+R + AS+L+ DL DWR G +F SQL+D D+ SN G W + A G D Sbjct: 353 ELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQGNWLYLAGYGTD 412 Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 R FNP Q + +DP G + WL +P Sbjct: 413 PRG-SRRFNPDKQAQDYDPGGAYRALWLSGTAAMPA 447 >gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771] Length = 208 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 122/205 (59%), Gaps = 7/205 (3%) Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 E+ WREF HL+ +P + + EW D +AW++G TG+PI+DA MRQ Sbjct: 2 KEIAWREFSYHLLYHFPRLASANW-NERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGMRQ 60 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L GWMHNR+RMI ASFLVKDLL+DWR GE +F L+D D A+N WQW A +G D+ Sbjct: 61 LRRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGADA 120 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 P+FRIFNP +QG+ FDP+G ++ ++PEL + +YIH P + L Y Sbjct: 121 SPFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGHTY 180 Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481 P P+VDH A + L Y A + S Sbjct: 181 PAPMVDHGSARNRALAAYDAIRAAS 205 >gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13] Length = 220 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 124/221 (56%), Gaps = 7/221 (3%) Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + +G +++ EL WR+ + +++ Y K +K++WN + L Sbjct: 1 MYHIQEKQQTSYSTGMDTFIKELAWRD-FYNMIFHYYPESKTKEIDDKYQKLKWNDNQDL 59 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 L WK+G TGFPI+DA MRQL GWMHNR+RMI ASFL KD L+DWR+GE YF L D Sbjct: 60 LDLWKKGKTGFPIVDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHD 119 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D ASN GGWQWAAS G D+VPYFR+FNP Q RFD +G +I+ +LPEL V + IH Sbjct: 120 YDEASNIGGWQWAASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHE 179 Query: 443 PHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 P + +YP P+VDH + + Sbjct: 180 PWKMDDHEQEKAGCVIGKDYPRPVVDHALQRKKAIQMFKEL 220 >gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis FRI909] Length = 457 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRINNNPLFNYIYRNKESINQCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I F + L +C +Q + K+ Y E Sbjct: 58 KFMHELQRYDI-------EPFLMPYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ Q + S + P N + YKV+T F + L+ D + I Sbjct: 111 KRFKQADIQVISLRANHYFNPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIT 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + I E++ + +F + + Y E R+ TS Sbjct: 171 KVAVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ G++ Q +N L + + + +++ ELI+REFY LM YP Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYEAFIRELIFREFYYVLMTNYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P+LN + +Y+H H + + ++ +YP ++DHK++ ++++ A Sbjct: 398 YIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456 >gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata] Length = 450 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 141/271 (52%), Gaps = 11/271 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + G NA IL +F ++++ Y + TS LSPYL G +S R + + + Sbjct: 48 WSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQ 107 Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 D + + A +L + RE+ R++ +P + + W+ D Sbjct: 108 IIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKF 166 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AW+QG TG+P++DA MR+L GWMHNR+R+I +SF VK LL+ W+ G +YF LLD Sbjct: 167 KAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDA 226 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL + GWQ+ + + D R+ NP +QG ++DP+G +IR WLPEL +PT++IH P Sbjct: 227 DLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHP 286 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACH 468 +L NY PIVD A Sbjct: 287 WDAPLTVLKASGVELGTNYAKPIVDIDTARE 317 >gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989] Length = 477 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 163/454 (35%), Gaps = 41/454 (9%) Query: 8 SVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISA-----RQSHF 60 L+W +DLRI DN L+ A +N+ +++ ++ E + Q + +F Sbjct: 9 PTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIATHRWNF 68 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L G + + E + + + + + NE Sbjct: 69 LVGSLHALNTELQALGQQLVIAK----GNPTEIISDLLSRYSINTVISSNTVGYNEQAYW 124 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADLR 175 + + + H + ++ + L ++ K L Sbjct: 125 QEISNKYPHLAFIQQETFTLFAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYLDAIKSS 184 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----------------LHIL 219 + P F +P + P H+ Sbjct: 185 LIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEASGISHLK 244 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQ-----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + F +Y + R+ + SP+L+ G LS R L + Sbjct: 245 QYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEEENGAND 304 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + + EL+WRE+++ Y + I + Q W G T +P Sbjct: 305 --STYWIMFELLWREYFQWYARKYGKKLFHRAGI-QQRAPLASFYPQRFQQWCNGSTPWP 361 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +++A M+QLN G++ NR R I AS L+ +L +DWR G YF QL+D D+A+N G WQ+ Sbjct: 362 LVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAANWGNWQY 421 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 A G D R FN Q + +DP T+I+ W Sbjct: 422 IAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454 >gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4] Length = 437 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 111/443 (25%), Positives = 189/443 (42%), Gaps = 25/443 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISA 55 M LVW +NDLRI DN L A + S+ VIA++ +++ Sbjct: 1 MPNKQN-KTSLVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEK 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ ++ ++ L I + C ++SIE + L+ +++ Sbjct: 59 FRARFLIETITDLKFQLQALNIPLFVY-CDYTENSIE---NLQNTHGFDALYLQKEWTTE 114 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E L++K+L V + L P + + + V+T FRK L +N++ L Sbjct: 115 ENNILDLVKKKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLL 174 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKV 227 PA + +P D F F ++K+ Sbjct: 175 PTANPANSSYTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKL 234 Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +Y + R+ +S+LS +L+ G +S + + ++KE + L + + ELI Sbjct: 235 GFYKKTRNGLIGTDYSSKLSAWLANGSISAKTIYWKVKE--FETLHFKNQSTYWLIFELI 292 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR++++++ + I + +W + + W T P I+A M +LN Sbjct: 293 WRDYFKYVSKKNNNKIFKIGGI-LDKTYQWKDNKDAVNKWINSETNEPFINANMNELNKT 351 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 GWM NR R AS+ K+LL+DWRIG YF S L+D D+ SN G W + + GND Sbjct: 352 GWMSNRGRQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGNDPRN-- 409 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429 R FN +Q +R+D G + WL Sbjct: 410 RKFNIKLQAERYDANGKYQSMWL 432 >gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A] Length = 433 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 107/437 (24%), Positives = 183/437 (41%), Gaps = 24/437 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 M LVWLRNDLR D + + AC + +V+A F P+ W ++HF+ Sbjct: 1 MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 +L +Q L K I S + + + Q + T LF+ ++ E Sbjct: 60 LETLRSLQTELENKNISLIVENRS----AATGIPFWLDQLKATALFFQEEWTFEEKMISD 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + ++ + + S D L P + + KV+T FRK + S P Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVL 175 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + + +P D+ F ++ + Y++ +R Q Sbjct: 176 NKSSLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSYYKQT 235 Query: 241 --------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +S+ SP+L+ G LS R + + ++ + + EL+WR++++ Sbjct: 236 RNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEVKKNE--STYWLIFELLWRDYFK 293 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + + I ++ WN W +G T P ++A M +L G+M NR Sbjct: 294 YISLKHGNSIFHLGGI-LKKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTGFMSNR 352 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 R AS+ K++++DWR+G YF QL+D D+ SN G W + A GND P R FN Sbjct: 353 GRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDRKFNIK 410 Query: 413 IQGKRFDPQGTFIRHWL 429 +Q +R+D G + WL Sbjct: 411 LQAERYDSNGKYQNLWL 427 >gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] Length = 208 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 98/195 (50%), Positives = 125/195 (64%), Gaps = 6/195 (3%) Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + +++ + I+W D + W++G TG+PIIDAAMRQLN GWMH Sbjct: 3 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 62 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NRLRMITASFLVK+L +DWR GE+YF L+D D A+N GGWQWAASTG D+VPYFRIFN Sbjct: 63 NRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFN 122 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464 P IQ K+FD G FI+ ++PEL VP +YIH P+ + L NYP PIVD+ Sbjct: 123 PIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYA 182 Query: 465 KACHHTLNQYYAAKK 479 + TL Y A+K+ Sbjct: 183 SSKKQTLFLYEASKE 197 >gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 362 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 194/361 (53%), Positives = 244/361 (67%), Gaps = 6/361 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVW RNDLRITDN AL AAC + A+VIA+FIATP+QW H ++ RQ+ F+ +L Sbjct: 1 MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L+ K I YHQC +F D++ WLD++C QQ+V LFYN+QYE+NE RRD+ L R Sbjct: 61 LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120 Query: 127 LQHRVICKSFDDSVLL-----PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L ++ PPGS+L +MYKV+TPFR+A IQ L+ +D +P P Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 R S P FDYP Q +DP+ FP GE AL LR FC+E+V Y +QRD PA+ Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 GTS LSPYL++GVLSPRQC+NRL+ E L P SGAF+WLNELIWREFY HL+ YP Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +C PFI WT+ + WN L AW+QG TG+PI+DAAMRQLN GWMHNRLRMI+ASF Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360 Query: 361 L 361 Sbjct: 361 F 361 >gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999] Length = 441 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 96/443 (21%), Positives = 175/443 (39%), Gaps = 30/443 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----------QWRQHGISA 55 M+ L W +DLR+ DN L D ++ ++I Q+ Q + Sbjct: 1 MNNGLYWFEHDLRLADNLPLQQTIAQID-QLHCIYIFNAADFSTTKKKGAGQFNQRHMGQ 59 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + FI +L +Q L G + + + ++ ++ Q T + + + Sbjct: 60 HRYRFIRQALDDLQSQLHTFGQQLHIY----YGEPLDIIEQLNTQFNFTHIGKHFHTGVY 115 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQAD 173 E L+ + ++ I + ++ ++ ++ + + + + + Sbjct: 116 ERNLISALKIQYPNKTIINTNSYTLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPDN 175 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---- 229 + P + + P +P + + + + K Y Sbjct: 176 ALPVSFPPVVVAEQNMPDELPAIQVCDKKLLAKNETVQRLIGGELKAKEQMHHYTYGTQA 235 Query: 230 ---YVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y E R+ + +S+LSP+L+ G +SPRQ + E + + EL Sbjct: 236 LSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITEY--EAQHGANDSTYWLFFEL 293 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 +WREF++ + + I + + + + W G T +PII+A MRQL Sbjct: 294 LWREFFQWQQLKHGKALYHRNGI-QQKSPRGFHNKKVFEDWVNGDTAYPIINACMRQLKY 352 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G+M NR R + AS + +L +DW+ G YF L+D D ASN G WQ+ A G+D Sbjct: 353 TGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNWQYLAGVGSDPRGC 412 Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q + +DP G FI +W Sbjct: 413 -RQFNLNKQTQTYDPHGEFIGYW 434 >gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01] gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01] Length = 450 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 108/428 (25%), Positives = 170/428 (39%), Gaps = 21/428 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61 ++ L W NDLR+ DN L A DA +I V+ ++ + + F+ Sbjct: 4 TIGLYWFTNDLRMHDNPLLTRASEEVDA-LICVYCYPKLSPFLAHFAQESMFGSAKQQFL 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL + SL+ Q + + + + VT L+ + E Sbjct: 63 DESLHCLNLSLNAFDQRLQVVDLHPY----QAIKHAVEKLGVTHLYCDAFSGSEEQDVVD 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + +H IC+ S+ + + +T FRK + + ++ Sbjct: 119 HIRQESEHLTICQQEVRSLFT-VEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTALP 177 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 + +G P+ P H R F Y + R+ + Sbjct: 178 LTPSGLALPTLRLIRDVKPCLFTGGEQAG----LEHARRYFSSTLASEYKQTRNGLDGMD 233 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G LSP+ + LK + L + EL+WRE++ + Sbjct: 234 YSTKFSPWLANGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRHKR 291 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + Q WK+G T FPI++A M QLN G+M NR R + AS Sbjct: 292 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 350 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + +DP Sbjct: 351 LVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDP 409 Query: 421 QGTFIRHW 428 FI W Sbjct: 410 HMEFIDRW 417 >gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC 700755] Length = 436 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 182/443 (41%), Gaps = 26/443 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56 M+ + +VW RNDLR D K+L+ AC + +A V+ V+ P + + Sbjct: 1 MQKKQK--ITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEK 57 Query: 57 -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ S+ Q+ +L I E + +T +FY ++ Sbjct: 58 YRAKFLIESVEQLSDNLQDLNISLHIAHKH----PSEVFKELSERYAITSVFYQTEWTRE 113 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E R + ++ L + +++D + P + +VYT FRK + Sbjct: 114 EKRVEAKVKSALPNADFIENYDQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKV 173 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV-- 227 P P + P D + + F GE A + + + Sbjct: 174 PAPQPRPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKL 233 Query: 228 YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 YY + R+ +S+ S +L+ G +S ++ ++ + +K + + ELI Sbjct: 234 QYYKKTRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELI 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR++++++ + + + + +W + L+ W G T ++A M ++ Sbjct: 292 WRDYFKYISLKHGNKIFQIGGVLNKDY-DWGNNKKALRDWINGNTPEDFVNANMIEIKET 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R S+ K+ DWRIG YF S L+D D+ SN G W + + GND P Sbjct: 351 GFMSNRGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRD 408 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429 R FN Q R+D G + R WL Sbjct: 409 RKFNIKNQADRYDSGGKYQRTWL 431 >gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B] Length = 439 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 96/421 (22%), Positives = 153/421 (36%), Gaps = 15/421 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQ 67 HL W + DLR+ DN AL H + ++ V++ G+ ++ F+ SL Sbjct: 9 HLHWFQRDLRLADNPALS--SHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQA 66 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L++ G + L + +T++ E + L++RL Sbjct: 67 LRDELNRLGQDLLVLE----GSPELVLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL 122 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + L L + + ++ L + PV Sbjct: 123 GVPFELHRGNTLFT---EDQLPTGLADFPATFTPFRKQVEPLTITPPAAEPVTLPPPPAA 179 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P P + + V Y + + + G+S LSP Sbjct: 180 QFDAIPPAQALPSPALPIPGGRAAGLRRVRQFIFDERRIVSYKETRNCLDGLDGSSSLSP 239 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L+ G LS R+ + + + L + EL+WREF+ A + Sbjct: 240 WLANGNLSAREVAHEIFRFEREQLANE--STYWLFFELLWREFF-QWRAVIDDHGLFHIG 296 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 D W G T FP+++A M QL GWM NR R I AS L+ +L Sbjct: 297 GVQKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRGRQIVASCLINELGQ 356 Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 DWR G +F L+D D+ SN G WQ+ A G D R FN Q + DP+ F Sbjct: 357 DWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRHFNLDKQAAQHDPENIFTTK 415 Query: 428 W 428 W Sbjct: 416 W 416 >gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B] Length = 450 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 106/435 (24%), Positives = 176/435 (40%), Gaps = 25/435 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 MK + L W NDLR+ DN L +A D ++I ++ TP ++ Sbjct: 1 MKKK----IGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ +SL ++ +SL+ G + + + + + VT ++ + Sbjct: 56 RAKLQFLDSSLSELNQSLNHLGQRLWAVELT----PDQAIKYAVNRFGVTHIYADAFPGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + H I + ++L + + + + D+ Sbjct: 112 DEQQALDRVAEGASHVKIKQQAIRTLLREEQLPFDLSNL-----PTTFTQFRKQVEGLDI 166 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 L N+P Y F A + H + F Y + R Sbjct: 167 SRPHESIRSLPPIPLGVNLPSVTAYYFDAKAAFHGGESRGLEHCRQYFASTLASEYKQTR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L+ G +SP+ + LK + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRYEAENGAND--STYWIYFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + I + +H Q WK+G T FPI++A M QLN G+M NR Sbjct: 285 YARRHKRQLFRFGGI-QNRAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 403 QTEMYDPHMEFIDRW 417 >gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group] Length = 568 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 169/371 (45%), Gaps = 19/371 (5%) Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +I +SF+ +L P +++ Q + ++ PF + LP I Sbjct: 1 MMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINS 60 Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + F+ + + + G QN L F + +Y R Sbjct: 61 GDLSMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADS 120 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L Sbjct: 121 ASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLS 180 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P KP + W + + W+QG TG+P++DA MR+L GW+H+R+R+ Sbjct: 181 FNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 239 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D RI NP ++G Sbjct: 240 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEG 299 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC 467 +FDP G ++R WLPEL +PT++IH P +L NYPLPIV D A Sbjct: 300 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANAR 359 Query: 468 -HHTLNQYYAA 477 L++ + Sbjct: 360 LQEALSEMWQL 370 >gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101] gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M899] gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus C160] gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus A017934/97] gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus M1015] gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus 58-424] gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus M809] gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MN8] gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH60] gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00] Length = 457 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] Length = 436 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 110/443 (24%), Positives = 193/443 (43%), Gaps = 26/443 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----A 55 M+ + ++W RN+LR+ DN++L A N +KVIAV+ P+ ++ + Sbjct: 1 MQKKQE-NTGVIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTAS 58 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ ++ ++K+L+ I + + + + C + V ++ +++ Sbjct: 59 FRTKFLIETITDLKKNLAALNITLL----TYMESPENKMHTLCDEFSVGTIYTQKEWTRE 114 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E+ D ++ L V + D L P ++ ++ V+T FRK + + + + Sbjct: 115 EIATDNFIKSTLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAV-EKE 173 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKV 227 T + IP F F +KV Sbjct: 174 CTVTKLSERNLIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKV 233 Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 +Y R+ +++ SP+L+ G LS + + ++KE + + + ELI Sbjct: 234 SFYKNTRNGLVGTDYSTKFSPWLANGSLSAKTIYWKIKEYEAEFGSNQ--STYWVIFELI 291 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR++++++ Y + I + EWN D +Q W G T ++A M +L Sbjct: 292 WRDYFKYISLKYNAKVFRIGGI-LEKTYEWNTDQKTVQQWINGETKDAFVNANMIELKET 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G+M NR R AS+ KDLL+DWRIG YF S LLD D+ SN G W + A GND P Sbjct: 351 GFMSNRGRQNVASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRD 408 Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429 R FN +Q R+D + + WL Sbjct: 409 RKFNTKMQADRYDQNHKYRKLWL 431 >gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] Length = 443 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 16/429 (3%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHF 60 M+V L W NDLR+ DN L+ A + D+ ++ V+ P++ + + + F Sbjct: 1 MAVKALYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPKKQQFNRYQLISVGEIRHRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +Q +L+ G Q D + + Q + ++ +R E ++ Sbjct: 60 LLQALQALQSNLATLGQRLLVMQA----DPMVSMPVLIEQYGINLIYRSRHCGWYEQQQW 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ H + ++ ++ V + + Sbjct: 116 CYLKQCYPHLRFVEVDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDYL 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAI 239 + + R +H+ + F Y E R+ I Sbjct: 176 PPQPNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRNAIEGW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ SP+L+ G +S + RL++ + + S + EL+WREF+ A Sbjct: 236 NNSTKFSPWLACGAISAKMIMARLQDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAV 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +++ + + W +G T +PI++A M+QLN G+M NR R I AS Sbjct: 293 GRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNQTGYMSNRGRQIVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LV +L VDWR G YF QL+D D+A+N G WQ+ A G DS R F+ Q + FD Sbjct: 353 CLVNELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFD 411 Query: 420 PQGTFIRHW 428 P FIRHW Sbjct: 412 PNHHFIRHW 420 >gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae C87] Length = 457 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 134/474 (28%), Positives = 214/474 (45%), Gaps = 30/474 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L R +N N + +I E++ R ++ + Sbjct: 5 VILNRVFRTNNNPLFEYVYQNMEDIEKCYYIIPKEEFSNEATMKRHYYY---------GT 55 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---KLLEKRLQ 128 L + H F + L + ++ + ++ EK + Sbjct: 56 LQKFVNTLYDHDIQPFLIDYDELIDFSKEKGINQVVIAGDIMSYHKEEYDILHQKEKFKK 115 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + P N+ + YKV+T F K L++ + + + I G Sbjct: 116 EDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVK 175 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + + + I E+NA + F + + Y +R+ TSQLS Y Sbjct: 176 SKQKVKGNYSQSG--------ISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIY 227 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ GVL Q +N L + + +++ ELI+REFY M YP F Sbjct: 228 LAYGVLDIIQIFNDLLNSYDK----DEQNYEAFIRELIFREFYYVFMTQYPKTAHH-AFK 282 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + W+ + W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +D Sbjct: 283 EKYQNLNWSYNEENFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFID 342 Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 W GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ + Sbjct: 343 WTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKF 402 Query: 429 LPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +P LN+V +Y+H + + +L +YP IVDH ++ H ++++ A Sbjct: 403 IPILNDVDAKYLHDTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKAL 456 >gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus C427] Length = 457 Score = 190 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFDP+ Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus JKD6159] Length = 457 Score = 190 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 131/479 (27%), Positives = 220/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V ++ L R+ N + FI T E S ++ F +L Sbjct: 1 MAVAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIITEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + ++ + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDIIHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD + TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLSEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L L+YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKAL 456 >gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2] gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH70] Length = 457 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 130/479 (27%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP IVDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKAL 456 >gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14] Length = 443 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 16/429 (3%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHF 60 M+V L W NDLR+ DN L+ A + D+ ++ V+ P++ + + + F Sbjct: 1 MAVKGLYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPQKQQFNRYQLVSVGEIRHRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L +Q +L+ G Q D + + Q + ++ +R E ++ Sbjct: 60 LLQALQALQSNLATLGQRLLVMQA----DPMLSMPVLIEQYGINLIYRSRHCGWYEQQQW 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + L++ H + ++ + ++ V + L Sbjct: 116 RYLKQCYPHLRFVEVDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDYL 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAI 239 + + R +H+ + F Y E R+ I Sbjct: 176 PPQPNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRNAIEGW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +++ SP+L+ G LS + L + + + S + EL+WREF+ A Sbjct: 236 DNSTKFSPWLACGALSAKMIMATLLDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAV 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +++ + + W +G T +PI++A M+QLN G+M NR R I AS Sbjct: 293 GRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKTGYMSNRGRQIVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LV +L +DWR G YF QL+D D+A+N G WQ+ A G DS R F+ Q + FD Sbjct: 353 CLVNELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFD 411 Query: 420 PQGTFIRHW 428 P FIRHW Sbjct: 412 PNHHFIRHW 420 >gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio cholerae TM 11079-80] Length = 461 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 105/436 (24%), Positives = 170/436 (38%), Gaps = 25/436 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGIS 54 M + L W NDLR+ DN L A D ++I ++ TP +Q Sbjct: 1 MSKK----IGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + + +L + SLS G + + L Q +T ++ Sbjct: 56 EAKKRVLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + + + I + S+L P + + +T FRK + + A + Sbjct: 112 DERQAIARIHQDFSSVHIHQQALHSLLSEPQ-LPFALEALPSTFTQFRKQVETLSLSAPM 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 V L +P + H F Y E R Sbjct: 171 GYPRV----LPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SP+ + L+ + + + EL+WRE++ Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y + I + + WK G T FPI++A MRQLN G+M NR Sbjct: 285 YARRYGAKLFRFSGIGEKKPLTSFYA-QRFLQWKHGETPFPIVNACMRQLNQTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + A+ LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVATCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHWL 429 Q +DP+G F+ W Sbjct: 403 QAHTYDPKGEFVAKWC 418 >gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 585 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 213/502 (42%), Gaps = 44/502 (8%) Query: 10 HLVWL-RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---QSHFIYASL 65 +V +D+RI DN+AL ACH++ V+ VF+ Q H AR Q + +L Sbjct: 26 AVVLFGTHDIRIHDNEALLLACHHN--HVLPVFLW---QVPVHHWGARGALQVV-LKEAL 79 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q+ LSQ+ I C N DS+ L + + +++NR+ ++ Sbjct: 80 HQLSLQLSQESINLPLV-CGNTADSVSELCKIASEIGASAVYWNREMTPESREMERHRAT 138 Query: 126 RLQHRVICKSFDDSVLLPPGSILN----HALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 L+ I S LL L + PF++A + L + D L + Sbjct: 139 SLKQLDIAAVACQSALLYDVEKLELDEGFHGGHWGTLMPFKRACEKQLGKPDRPILMKES 198 Query: 182 IRLTGPVTPSNIPR--------------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 + V P + I FP+ A L F + + Sbjct: 199 LACLYSVAPPPQDCKSVPIEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDHFLIKGL 258 Query: 228 YYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R ++ TSQLS YL IG++SPR+ + R+++ + K EL Sbjct: 259 PLYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDSSLSPEAKKTFARRLIWRELA 318 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 + + + S+ +E + +++ AWK+G TG+P++DA MR+L T Sbjct: 319 YYQLFCFPKMRDRSIRKHY---EASEWVTGDEEKGRFNAWKRGLTGYPLVDAGMRELYTT 375 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 G++ +RM+ ASFLV+ L VDW G E+F L D D A N+ WQ A +G D + Sbjct: 376 GYLTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGRSGIDQWNF- 434 Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460 + +P + DP G + R W+PEL+ +P QY+ P + + L YP I Sbjct: 435 -VLSPENASQ--DPYGEYTRKWVPELSPLPLQYLQRPWQTFEGDLRMAGIVLGETYPHRI 491 Query: 461 V-DHKKACHHTLNQYYAAKKQS 481 V D K ++ A +++S Sbjct: 492 VQDLKGERQKSVESVLAMRRRS 513 >gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21] gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21] Length = 434 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 177/444 (39%), Gaps = 24/444 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISA 55 M T LVW RNDLR+ DN+ L+ A +D +V+ V++ P Q+ H Sbjct: 1 MNKDTI----LVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGV 55 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ FI S+ ++ SL G E L + + +V +++++R+ Sbjct: 56 IRAKFILESVQDLRLSLRSLGADLLV----VSGYPEEILPTLAERYQVKEVYHHREVAKE 111 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E L+E+ L + + L L ++ + I+ Sbjct: 112 ETHISTLVEEALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPS 171 Query: 176 SLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 I + + S IP F I P + R Sbjct: 172 VETPVKIEVPDNLEASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLETLLAGADTA 231 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + + LSP++++G LS ++ +K+ + PK A + + L+WR+++ Sbjct: 232 SLTGSFGSEEGTVLSPWIAMGCLSVHTVYHAVKKY--EDKSLPKKQAAAIITGLLWRDYF 289 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R + + + + L WK+G TG P +DAAM QLNTIG++ + Sbjct: 290 RFMFKKHGNKFFLQQGFSNEIPAYELVGDALFDRWKRGETGDPFVDAAMHQLNTIGFISH 349 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFN 410 RM+ A +LV +L + +G YF +L+D + ASN G W A G+ + R + Sbjct: 350 TARMLVAHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGSSTKDNGIR--D 407 Query: 411 PTIQGKRFDPQGTFIRHW-LPELN 433 D QG +++ W P+L+ Sbjct: 408 IKKLQNLLDAQGEYVKRWGTPQLS 431 >gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides KD131] Length = 454 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 106/476 (22%), Positives = 161/476 (33%), Gaps = 60/476 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L Sbjct: 1 MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRTECLA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ G D L C R+ ++F Sbjct: 57 DLRADLAALGAPLAVR----VGDPQAVLSKLCRLHRIRRIFC------------------ 94 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + P + L+ ALQ + T ++ A P+PA+ Sbjct: 95 -------------LEDPAFAELDLALQAWAAGTGLELIRLKPGPGAPAALTPLPAVEP-- 139 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244 P R P G +L+ F + + Y + R+ +S+ Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G LS + + + + + A P Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPE 257 Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P L+ A G TG P +DAA+R + GW+ RLR + AS Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + + + L D + + A R +P DP Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473 G F R WLPEL VP + + AP W + L YP P+VD A TL + Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425 >gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis W23144] Length = 457 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 226/479 (47%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L RI +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRINNNPLFDYIYRNKESINQCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I F S + L +C +Q + K+ Y E Sbjct: 58 KFMYKLQRYDI-------EPFLMSYDKLIDFCKKQTIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ Q + + + P N + YKV+T F + L+ D + I Sbjct: 111 KRFKQADIQVITLRANHYFKPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIT 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + I E++ + +F + + Y E R+ TS Sbjct: 171 KVAVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ G++ Q +N L + + + +++ ELI+REFY LM YP Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYEAFIRELIFREFYYVLMTNYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P+LN + +Y+H H + + ++ +YP ++DHK++ ++++ A Sbjct: 398 YIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456 >gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU028] Length = 457 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 224/479 (46%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I F S + L +C +Q + K+ Y E Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ Q + S + P N + YKV+T F + L+ D + I Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + I E++ + +F + + Y E R+ TS Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ G++ Q +N L + + + +++ ELI+REFY LM YP Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++++W + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K Sbjct: 279 V-AFKEKYQQLKWFYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ ++++ A Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456 >gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A] gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus epidermidis RP62A] gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis BCM-HMP0060] gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis SK135] gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis M23864:W2(grey)] gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis VCU144] gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus epidermidis VCU045] Length = 457 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I F S + L +C +Q + K+ Y E Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ Q + S + P N + YKV+T F + L+ D + I Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + I E++ + +F + + Y E R+ TS Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ G++ Q +N L + + + +++ ELI+REFY LM YP Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE +F +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ ++++ A Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456 >gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A5937] Length = 457 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 339 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 160/342 (46%), Positives = 224/342 (65%), Gaps = 4/342 (1%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QYE NE +RD +EK Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L VIC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179 Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 ++ P +YP QA D FP+ E + LR FC + Y +RD PA+ GTS+L Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L+ G LSPRQC +RL E L WLNELIWREFYRHLM +YP++C + Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLNELIWREFYRHLMTWYPALCKHQ 297 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 PFI WT+++ W ++ H QAW++G TG+PI+DAAMRQLN G Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339 >gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521] gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521] Length = 623 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 107/581 (18%), Positives = 183/581 (31%), Gaps = 123/581 (21%) Query: 7 MSVHLVW--LRNDLRITDNKALYAACH---------NSDAKVIAVFIAT----------- 44 M+ +++ LRNDLR+ D+ L+ V+ V++ Sbjct: 1 MTRNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPR 60 Query: 45 ------------------PEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 + + FI S+ ++ L + G Sbjct: 61 LEKARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDL----AMF 116 Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 + S Q R Y E+ +++ ++ R++ + S Sbjct: 117 AGTPESVIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKS 176 Query: 147 ILNHAL------------QMYKVYTPFRKALIQNLVQADLRSLPVP-------------- 180 +++ ++ + L D Sbjct: 177 LIHSRDLGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSA 236 Query: 181 -----------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + + + + + GE AL Sbjct: 237 NKQHGLDRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALA 296 Query: 218 ILRKFCKEKVYY----YVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 L + Y + R+ +++ L++G+LSPR + E Sbjct: 297 RLDHYFDRSDSCPAASYKQTRNQMLGTDYSTKFGAALALGLLSPRLIAQKATELDNATHD 356 Query: 273 KPKS-----GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--- 324 + G + + EL+WR+++ + + S I Sbjct: 357 ATHNASNKGGGYWIIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAPSKASEWKSS 416 Query: 325 -----------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 W TG P+IDA M ++ G+M NR R ASFL KDL +WR G Sbjct: 417 ASLSDRDDGFVRWCTAQTGVPLIDANMVEMVQTGFMSNRGRQNVASFLTKDLGWNWRHGA 476 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 E+F S L+D + SN G WQ+ A GND R FNP QG +D G ++ WLP L+ Sbjct: 477 EFFESWLVDYEPNSNWGNWQYVAGVGNDPR-SSRQFNPIKQGNDYDANGEYVATWLPLLS 535 Query: 434 NVPTQYIHAPHSWL----DKNDLSLNYPL-PIVDHKKACHH 469 ++P QY H P + + S +YP PIV+ + H Sbjct: 536 DMPPQYRHHPWTCPDAAWAEQAHSAHYPPTPIVEQQMWRKH 576 >gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus MSSA476] gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21193] Length = 457 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116] gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116] Length = 460 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 111/428 (25%), Positives = 171/428 (39%), Gaps = 21/428 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFI 61 ++ L W NDLR+ DN L A DA +I V+ ++ + + F+ Sbjct: 14 TIGLYWFTNDLRMHDNPLLARASEEVDA-LIFVYCYPKLSPFLAHFAQESMFGSAKQQFL 72 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 SL V +L+ Q + ++ C VT L+ + E Sbjct: 73 DESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLC----VTHLYCDTFPGSEERDVVD 128 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + L+H IC+ S+L + + +T FRK ++ ++ Sbjct: 129 HIRQELEHLTICQQEVRSLLT-VEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTALP 187 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQ 240 +G P+ P H R F Y + R+ + Sbjct: 188 PTPSGLALPTLRLIRDVKPCLFTGGEQAG----LEHARRYFSSTLASEYKQTRNGLDGMD 243 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +++ SP+L+ G LSP+ + LK + L + EL+WRE++ + Sbjct: 244 YSTKFSPWLAHGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRHKR 301 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 I + Q WK+G T FPI++A M QLN G+M NR R + AS Sbjct: 302 QLFRFGGIQNQAPLTSFYAHRFQQ-WKKGETPFPIVNACMHQLNETGYMSNRGRQLVASC 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + +DP Sbjct: 361 LVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEIYDP 419 Query: 421 QGTFIRHW 428 FI W Sbjct: 420 HMEFIDRW 427 >gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719] Length = 394 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 144/377 (38%), Positives = 212/377 (56%), Gaps = 6/377 (1%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++L+W R DLR TDN AL AA +A+++ +P QWR+H + + F +L + Sbjct: 5 PMNLIWFRCDLRTTDNSALLAAAD--GRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGE 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +Q+ L+ I C ++ + E + C + V + N++Y +NE RRD+ + +RL Sbjct: 63 LQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRL 122 Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S D + PGS+L ++V++ FRK + L QA P P + Sbjct: 123 REQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPH 182 Query: 187 PVTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + +P F P ++ ++P GE+ A LR F + + Y E+RD PA+ GTS Sbjct: 183 ALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTS 242 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLSPYL+ GVLSPRQC + + GA +W+NEL+WREFY+H++ YP V Sbjct: 243 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSR 302 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +PF TE + W + L+AW+QG TG PIIDAAM QL GWMHNRLRM+ A FL K Sbjct: 303 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRLRMVVAMFLSK 362 Query: 364 DLLVDWRIGEEYFMSQL 380 +LL+DWR GE +FM L Sbjct: 363 NLLIDWREGERWFMRHL 379 >gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens] Length = 427 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 131/284 (46%), Gaps = 14/284 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 +P GE AL L + + K + +R + LSPYL G LS R + +L Sbjct: 51 WPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKL 110 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + S +L+WREF+ P + P +I W+K+ L Sbjct: 111 TDLYKKVKKNSSPPL-SLYGQLLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEAL 168 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD Sbjct: 169 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 228 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D + N G W W + + +F + P G+R DP G +IR +LP L P +YI+ Sbjct: 229 ADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYD 287 Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + K + +NYP P+V+H +A + + +Q Sbjct: 288 PWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQ 331 >gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium HTCC2181] Length = 426 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 96/427 (22%), Positives = 174/427 (40%), Gaps = 12/427 (2%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYAS 64 + W RNDLR+ DN AL +A +NSD ++ V I +W+ + F+Y Sbjct: 3 SIYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQG 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q +L G E ++ + + + + + E +L Sbjct: 62 LEELQLNLKSYGHHLNRFVGKTNLIFQELINRHHINSVYCESINAFEEQAQERLIKELGV 121 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + + K + + + +P + Sbjct: 122 NLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKNTIPILDS 181 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGT 242 +T + F D F GE+ A + ++ + + + ++ I+ + Sbjct: 182 KTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQYFQSDYPNSYKYSRNNLMGIECS 241 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ SP+LS+G +S Q ++ LK + + EL+WR+++R L Y + Sbjct: 242 TKFSPWLSLGFISANQIYSALKRY--EQRNSANDSTYWIYFELLWRDYFRFLFMKYGKIF 299 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K + + K + + WK G T I+A + +LN G++ NR+R I AS+LV Sbjct: 300 FYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAGISELNQTGFISNRMRQILASYLV 358 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L DWR G +F QL+D D+ SN G W + A G D R FN Q +DP G Sbjct: 359 NELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVGTDPRG-GRHFNVDKQKNTYDPDG 417 Query: 423 TFIRHWL 429 ++ + W+ Sbjct: 418 SYEKEWI 424 >gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides 2.4.1] Length = 454 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 106/476 (22%), Positives = 165/476 (34%), Gaps = 60/476 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L Sbjct: 1 MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ G D+ L C R+ ++ Sbjct: 57 DLRADLAALGAPLAVR----VGDAQAVLSKLCKLHRIGRILC------------------ 94 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + P + L+ ALQ + T ++ A P+PA+ Sbjct: 95 -------------LEDPAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEP-- 139 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244 P R P G +L+ F + + Y + R+ +S+ Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G LS + + + + + A P G Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPGRPG 257 Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P + ++ L+ A G TG P +DAA+R + GW+ RLR + AS Sbjct: 258 GGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + + + L D + + A R +P DP Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473 G F R WLPEL VP + + AP W + L YP P+VD A TL + Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425 >gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981] Length = 457 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 218/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D +F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIVFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N] Length = 454 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 104/476 (21%), Positives = 160/476 (33%), Gaps = 60/476 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L Sbjct: 1 MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ G + L C R+ ++ Sbjct: 57 DLRADLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILC------------------ 94 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + P + L+ ALQ + T ++ A P+PA+ Sbjct: 95 -------------LDDPAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEP-- 139 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244 P R P G +L+ F + + Y + R+ +S+ Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G LS + + + + + A P Sbjct: 198 LSPHLATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPE 257 Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P L+ A G TG P +DAA+R + GW+ RLR + AS Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + + + L D + + A R +P DP Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473 G F R WLPEL VP + + AP W + L YP P+VD A TL + Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425 >gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 583 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 160/354 (45%), Gaps = 19/354 (5%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P + + Q + ++ PF + LP I + F+ Sbjct: 18 YDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLSMCPSDDLIFEDES 77 Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + + + G QNA L F + Y R TS LSPYL G LS Sbjct: 78 ERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSLLSPYLHFGELSV 137 Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 R+ ++ ++ + + + +L + RE+ R+L +P KP + Sbjct: 138 RKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP-CSHEKPLLAHLR 196 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 W D + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G Sbjct: 197 FFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWG 256 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 +YF LLD DL S+ GWQ+ + + DS I NP ++G +FDP G ++R WLPEL Sbjct: 257 MKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPEL 316 Query: 433 NNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHTLNQYYAA 477 +PT++IH P +L NYPLPIV+ A L++ + Sbjct: 317 ARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEALSEMWQL 370 >gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus N315] gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH9] gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus Mu3] gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus MR1] gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315] gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus Mu50] gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus subsp. aureus JH9] gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus JH1] gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9781] gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9763] gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A9719] gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299] gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A8115] gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6300] gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus A6224] gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus ED98] gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102] gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117] gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819] gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796] gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp. aureus CGS03] gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus aureus subsp. aureus 21172] Length = 457 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 217/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F + L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NHEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 457 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLK 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456 >gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17029] Length = 454 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 104/476 (21%), Positives = 160/476 (33%), Gaps = 60/476 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V L+W RNDLR+ D+ AL A D +V+ + I P +W S RQ F L Sbjct: 1 MNV-LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLA 56 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ G + L C R+ ++ Sbjct: 57 DLRADLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILC------------------ 94 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + P + L+ ALQ + T ++ A P+PA+ Sbjct: 95 -------------LEDPAFAELDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVEP-- 139 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQ 244 P R P G +L+ F + + Y + R+ +S+ Sbjct: 140 --GPIPPARALRLAEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSR 197 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G LS + + + + + A P Sbjct: 198 LSPHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPAAPE 257 Query: 305 KPFIPWTEKIEWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P L+ A G TG P +DAA+R + GW+ RLR + AS Sbjct: 258 GAAPPEDIWTRLKGKPDALRLRLAALHAGETGLPFVDAALRAMAASGWLPARLRGMLASV 317 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + L + + + L D + + A R +P DP Sbjct: 318 ALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMRRVA--------LGRPVDPERLAGVLDP 369 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACH--HTLNQ 473 G F R WLPEL VP + + AP W + L YP P+VD A TL + Sbjct: 370 DGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRTLAR 425 >gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus 21189] Length = 457 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 NFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus 132] gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus subsp. aureus COL] gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30] gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20] gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765] gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754] gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus CGS01] gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus T0131] Length = 457 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio coralliilyticus ATCC BAA-450] Length = 440 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 102/434 (23%), Positives = 170/434 (39%), Gaps = 26/434 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGIS 54 MK V L W DLRI DN L+ A D+ ++ V+ ++ + Sbjct: 1 MKQK----VGLYWFTCDLRIQDNPLLWQASCEVDS-LLCVYCLPQMDRYLVRYSQEQSLG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + + F+ S+ + +SL G D ++ L+ + VT + + + Sbjct: 56 SERLAFLQQSVACLSQSLENMGQKLLVFD----DRPLDVLNRFIQDYGVTHFYCDLFSGV 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 NE L + L + C + L + ++ +T FRK + + D Sbjct: 112 NEQSVVDRLSQ-LHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQVEHLPIGVDS 170 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 +P P + + Q +G + + Sbjct: 171 SLSALPEP----PAQVISTLNMEEVSCQLFAGGETLGLAHCSGYFATSLASHYKQTRNEL 226 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D +++ SP+L++G LSP++ + L+E + + EL+WRE++ Sbjct: 227 DG--FDFSTKFSPWLAVGCLSPKRIFVLLQEY--EQREGANDSTYWIFFELLWREYFHWY 282 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + Q WK G T +PI++A M QL G+M NR R Sbjct: 283 GKLWGRRLFKFSGLKDATPLTSFYSYRFQQ-WKHGETQYPIVNACMNQLKATGYMSNRGR 341 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS L+ +L +DWR G YF +QL+D D+ASN G WQ+ A G D R FN Q Sbjct: 342 QLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRD-SRRFNLAKQ 400 Query: 415 GKRFDPQGTFIRHW 428 + +DP FI W Sbjct: 401 TEMYDPDKVFIERW 414 >gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma citri] Length = 435 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 132/476 (27%), Positives = 202/476 (42%), Gaps = 48/476 (10%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67 +++ D RI DN L N + K+ +FI T EQ + + S+R + L Q Sbjct: 1 MNIFIFHRDFRIEDNLGLAQ-LANEEKKIYLLFIFTKEQIKANNYFSSRSFQAMVHCLKQ 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + K + + + N I++L ++ K++ NR Y + R K + + Sbjct: 60 LTKK-----VHVNFLKSENEQTGIKFL--LEQGYKINKIYTNRDYTPFALNRSKAMRQLS 112 Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + FDD VLL P +I Y V+TPF L ++ + + V Sbjct: 113 KEYNFIYREFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKV------N 166 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQL 245 P P ++ ++ + Y + RD+ GT+++ Sbjct: 167 PFLPQHLKDLEILQDITNVKSSDFNLPLEFEKVKTAMFQLNQNYQQTRDLVDLENGTAKI 226 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S L GV+S RQC+ E+F + +L WR+FY + Sbjct: 227 STALKFGVVSIRQCYLWSIEKFGTFDNA-------FARQLAWRDFYYQVTYNAQLHQQWC 279 Query: 306 PFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 W +KI N + Q W+ G TG+ IDA M++L G +HNR RM+ ASFLVK Sbjct: 280 FSENWNKKITINWTNNLEWFQKWQNGETGYDFIDAGMKELKETGLLHNRARMVCASFLVK 339 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L +DW GE+YF QL+D D N WQW A TG D+ P+FRIFNP +Q K++DP + Sbjct: 340 NLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIFNPELQQKKYDPTSS 399 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + + L N PT IVD+K + L Y K Sbjct: 400 YCNKF---LKNRPT-------------------INKIVDYKISVKKALEIYKDCIK 433 >gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis] Length = 431 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 128/244 (52%), Gaps = 10/244 (4%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPYL G LS R + RL+E + + + S +L+WREF+ + +A+ Sbjct: 144 TTVLSPYLKFGCLSSRLFYQRLQEVYRKVKKHTEPPV-SLEGQLLWREFF-YTVAYGTPK 201 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P ++I WN D LL AW+ G TG+P IDA M QL GWMH+ R A FL Sbjct: 202 FDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACFL 261 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G + F L+D D A NN W W + + S Y RI++P GK++DP Sbjct: 262 TRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQ-YHRIYSPISFGKKYDP 320 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 G ++R++LP L ++P +YI+ P + K + +YP P+V H A + + Sbjct: 321 DGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYPEPLVSHLGASKNCKEKI 380 Query: 475 YAAK 478 AA Sbjct: 381 AAAY 384 >gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546] Length = 449 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 103/430 (23%), Positives = 159/430 (36%), Gaps = 21/430 (4%) Query: 7 MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TP---EQWRQHGISARQS 58 MS + L W NDLR+ DN L A D ++I ++ +P +Q S + Sbjct: 1 MSKVIGLYWFTNDLRVHDNPLLSKAAAEVD-QLICLYCYPSVSPYLARYSQQAKWSEPKL 59 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ ASL + SL+ + + V+ L+ + +E Sbjct: 60 QFLDASLHCLNLSLNALNQRLLVVDSHPY----HAIKDLVYGLGVSHLYVDAVAGCDEQS 115 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 L+ + + ++ L L + ++ LV S Sbjct: 116 IIDSLKAEFDALDVAQKEVRTLFTL--EQLPFELSALPDTFTQFRKQVEPLVVPLPISWV 173 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 L ++ I + G + C + D Sbjct: 174 KRLPSLPDTLSLPGISLTHHGGSALFEGGEQAGLAHCRRYFSSACPSEYKETRNALDGL- 232 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +++ SP+L+ G LS + + LK + L + EL+WRE++ Y Sbjct: 233 -DYSTKFSPWLAHGCLSAKTIYAMLKRY--ERLNGANESTYWIYFELLWREYFYWYARRY 289 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 I + Q WK G T F I++A M QLN G+M NR R + A Sbjct: 290 RQKLFRFGGIRNQPPLTSFYAHRFQQ-WKNGQTPFAIVNACMHQLNQTGYMSNRGRQLVA 348 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 S L+ +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q + + Sbjct: 349 SCLIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTQMY 407 Query: 419 DPQGTFIRHW 428 DP FI W Sbjct: 408 DPYQEFIDRW 417 >gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256] Length = 463 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 192/464 (41%), Gaps = 36/464 (7%) Query: 1 MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 + AM H LVW R +LRI DN AL AA V V++ Q + RQ Sbjct: 31 LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AQGSSEIPNPRQDW 86 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F Y + + SL+ +G+ +E L + + V + + Y +E+ + Sbjct: 87 FHYQAAAALHGSLAARGVALYAVNR------VEELPALATRLNVQTVIADEAYTSSEIGQ 140 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + L + + + +D + I+ Y + +++A + Q Sbjct: 141 DNRIWRILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQRFGGQDV 200 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 T +P F + Q G ++ + +E + +Y +D PA Sbjct: 201 GGGRAEIFQTTSVEMPSFPAWNGQQDMVSAQRGGEDEAGKQWQHFEENIGFYPIMKDFPA 260 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +GTS+LS YLS G +SPR GA +WL+ LI R+FY+ L Sbjct: 261 RKGTSRLSAYLSAGCISPRVL----------ATEASGQGADAWLDNLIQRDFYQQLAYHR 310 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P + L + W+QG TGFP+IDAAMR L + GW+H LR +TA Sbjct: 311 AR------IEPESAAESAPFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLTA 364 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI-FNPTIQGKR 417 FL L G +F +Q D D A N G WQ + R + +R Sbjct: 365 EFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQ------TAARNAHRRSIDIIQTARR 418 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 DP GTF+R +PEL ++P +H P + D + YP P+V Sbjct: 419 LDPDGTFVRRHIPELAHLPVNLVHTPWLASSEID-AHGYPPPVV 461 >gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102] Length = 702 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 103/520 (19%), Positives = 171/520 (32%), Gaps = 91/520 (17%) Query: 7 MSVH---LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI------- 53 MS + LR DLR+ DN L+ A + ++ V++ + +Q G Sbjct: 1 MSRSKLLVYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQS 60 Query: 54 ---------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 ++ F ++ +++SL + G S D + Sbjct: 61 PYPPAKSQVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELK 120 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY--- 155 + + E +++ L + + + L+ Sbjct: 121 DAVPCVSSVWMTEEPSWEEVQEQESISSLCSQQGIEFELWKDEKYFVDDRDTGLESPADL 180 Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAI------------------------------RLT 185 + + L + + LP PA RL Sbjct: 181 PDVFTTYRKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKRLV 240 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGTS 243 P+ F GE + LR K + R+ + + Sbjct: 241 KPLEHIMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSL 300 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRH 293 +LS YLS+G L+ RQ L + + G EL+WR++ R Sbjct: 301 KLSAYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRL 360 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ------------------AWKQGYTGFPI 335 A + + + + ++ G TG I Sbjct: 361 CTAKFGRKLFRLSGFRQDRSYDKKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGI 420 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+L G+ NR R ASF K L +DWR G E++ L+D D++SN WQ+ Sbjct: 421 IDASQRELFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYV 480 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 A TGND R FNP Q +D +GT++R W+PEL + Sbjct: 481 AGTGNDPRGDARTFNPVKQAFDYDKEGTYVRMWVPELQGL 520 >gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus epidermidis ATCC 12228] Length = 457 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 224/479 (46%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ +N N ++ FI E++ + Q + Y S+ Sbjct: 1 MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQYY--YGSIQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN---RQYEINEVRRDKLL 123 + L + I F S + L +C +Q + K+ Y E Sbjct: 58 KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 ++ Q + S + P N + YKV+T F + L+ D + I Sbjct: 111 KRFKQANIQVISLRANHYFNPRKTYNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDIS 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + I + I E++ + +F + + Y E R+ TS Sbjct: 171 KVVVKSQHKIKEDYHSYG--------ISERDVQNRWSEFLSQDIENYKENREYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS YL+ G++ Q +N L + + + +++ ELI+REFY LM YP Sbjct: 223 QLSIYLAYGMIDIIQVFNDLLQNYDK----NEQNYETFIRELIFREFYYVLMTNYPETAH 278 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F ++++W+ + + WK G TGFPIIDAAM +L T G+MHNR+RM+ + FL K Sbjct: 279 V-AFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE +F +L+D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD Sbjct: 338 DLFIDWIWGESFFKQKLIDYYAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNAR 397 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ ++P LN V +Y+H H + + ++ +YP ++DHK++ ++++ A Sbjct: 398 YIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKAL 456 >gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp. aureus TCH130] Length = 457 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 215/479 (44%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + YKV+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDQDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ W +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNETDFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKAL 456 >gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 184 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 6/180 (3%) Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 +K W +D L+ WKQG TG+PI+DA MR+L+ GWMHNR+RMITASFLVK L Sbjct: 5 NLRKQFDKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHL 64 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++W GE++F LLD ++ +N GWQW A G D+ PYFRIFNP +QG++FD +G ++ Sbjct: 65 RINWVEGEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYV 124 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + W+ ELN +P +YIH P + L NY PIV+H +A + L + K Sbjct: 125 KKWVKELNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAFKNLKN 184 >gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis SK14] Length = 457 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 223/471 (47%), Gaps = 24/471 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 V L R +N N + +I E + + + ++ Y +L + + Sbjct: 5 VILNRVFRTDNNPLFEYVYQNMEDIDQCYYIIPKEDFGNE--AKMKRNYYYGTLQKFVHA 62 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + I ++D+ +++ + + V ++ + + + + Sbjct: 63 LYENDIQPFL---MDYDELVDFFKEKGINEVVIAGDIMSYHKEEYDILHQREQFKKEDIS 119 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + P + N+ + YKV+T F K L++ + + + + G + Sbjct: 120 VTTIRANHYFKPSKT-RNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGVKSKQ 178 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 + + I E+ A + F + + Y R+ TSQLS YL+ Sbjct: 179 KLKGDYSQSG--------ISEETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSIYLAY 230 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 GVL Q +N L D K + +++ ELI+REFY LM YP F Sbjct: 231 GVLDIIQIFNDLL----DGYDKDEQNYEAFIRELIFREFYYVLMTQYPKTAHI-AFKEKY 285 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + + W+ + WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW Sbjct: 286 QNLNWSYNEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTW 345 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431 GEEYF +L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + +I+ ++P Sbjct: 346 GEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPT 405 Query: 432 LNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477 LN+V +Y+H + + +L +YP +V+H ++ H ++++ A Sbjct: 406 LNDVDAKYLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAM 456 >gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus pseudintermedius ED99] Length = 474 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 168/389 (43%), Gaps = 16/389 (4%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 LD+ ++ + + + + S + Q Sbjct: 78 LDTLANALSLSHVLMAKDIMSYHRASYDYPHMKKRFEKHHISVIGQRVNHYFQPSKTFNQ 137 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 ++ Y F N ++ + + + D + Sbjct: 138 QHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQYAAKGMNQSDLKFDKHTDEEACARQS 197 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + R+ S LS YL+ G+L R+ N L + Sbjct: 198 WNHFLNHEITLYSQLADDITRNNI-----SGLSRYLAYGLLDIREVINHLL----EGYDS 248 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 ++ S++ EL++REFY LM YP + F +EW++ +AWK G TG+ Sbjct: 249 DENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHFEAWKNGETGY 307 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PIIDAAM++L G+MHNRLRMI + FL K L ++W GE +F L+D D ASN GWQ Sbjct: 308 PIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDYDNASNVHGWQ 367 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451 W+ASTG D+VPYFR+FNP Q +RFD G FI+ L L +V +YIH P ++ Sbjct: 368 WSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNPSQYVTAIQQN 427 Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYA 476 + +YP IV+HK++ + + Q+ Sbjct: 428 HQIKIGEDYPKAIVNHKESRDYVMQQFKQ 456 >gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii] Length = 411 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 98/420 (23%), Positives = 159/420 (37%), Gaps = 27/420 (6%) Query: 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS + W R LR+ DN AL AA + + +F+ P I + F+ +L Sbjct: 1 MSHNSIHWFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + SL + E L + ++T+L + E RDK + K Sbjct: 60 KDLDSSLKKLNSRLFVVSGP----PAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMK 115 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + S L + T R + N + + + +P P Sbjct: 116 LAEENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDM 175 Query: 186 GPVTPSNIPRFFDYPFQAI------------DPMFPIGEQ----NALHILRKFCKEKVYY 229 V+ + +FP GEQ + + + Sbjct: 176 KGVSTPFFEDHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCKFE 235 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + I T+ LSPY+ G LS R W RL + + + S +L+WRE Sbjct: 236 KPQTSPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVY--RGKQHSEPPVSLHGQLLWRE 293 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P+ + +++W+ + L AW++ TGFP IDA M QL GW+ Sbjct: 294 FFYTTAVGIPNFNRME-GNRHCVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLCQEGWI 352 Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H+ R A FL + DL + W G++ F LLD D + N G WQW +++ +FR+ Sbjct: 353 HHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ-FFRV 411 >gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996] Length = 481 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 197/464 (42%), Gaps = 36/464 (7%) Query: 1 MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 + AM H LVW R +LRI DN AL AA V V++ + + RQ Sbjct: 49 LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AKGSSEIRNPRQDW 104 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F Y + + SL+ +G+ +E L ++ + V + + Y +E+ + Sbjct: 105 FHYQAAAALHGSLAARGVALYAVNR------VEELPAFAARLNVQTVIADEAYTSSEIGQ 158 Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 D + + L + + + +D + I+ Y + +++A + Q Sbjct: 159 DNRIWRILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDA 218 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 T + +P F + Q G ++ + +E + +Y +D PA Sbjct: 219 DCRQTEIFQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQFEENIGFYPIMKDFPA 278 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 +GTS+LS YLS G +SPR + GA +WL+ LI R+FY+ L Sbjct: 279 RKGTSRLSAYLSAGCISPRVL----------AVEAAGQGADAWLDNLIRRDFYQQLAYHR 328 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P T+ + L + W+QG TGFP+IDAAMR L + GW+H LR +TA Sbjct: 329 AR------IEPETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLTA 382 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI-FNPTIQGKR 417 FL L G +F +Q D D A N G WQ + R + +R Sbjct: 383 EFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQ------TAARNARRRSIDIIQTARR 436 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 DP GTF+R +PEL ++P +H P + D + YP P++ Sbjct: 437 LDPDGTFVRRHIPELAHLPANLVHTPWLASSEID-AHGYPSPVI 479 >gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2] Length = 437 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 20/439 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISA 55 M+ TT + L W R+DLR D AL + C D + ++I P + + Sbjct: 8 MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTL-LYIIDDSWFVPNSYGIQPVGE 66 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + +F+ ++ + + S G + + E L S T N Sbjct: 67 HRFNFLIDTIEALNEKASTLGHSILTLR----GQTPELLVSLLSSNAFTHFGVTEHGGYN 122 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E R + + + + I + + S L + + M V+TPF++ + + + Sbjct: 123 ERREVEAVSRFFPNIEI-VTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESAIKPREPM 181 Query: 176 SLPVPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYV 231 + R P + + P + F GE + F + Y Sbjct: 182 ATLTALPRSYTPDIDAECQYTLNRRPPRNQAEGTFVGGEDAVLSHLNSYLFEWKVAASYK 241 Query: 232 EQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ + +++LSP+L+ G LS R +K+ + + + EL+WRE+ Sbjct: 242 ETRNALDNWRDSTKLSPWLATGALSARYVIQEVKKY--EQNVVKNDSTYWIYFELLWREY 299 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + L + S I + + W G TG+PI+DA MRQL + G++ Sbjct: 300 FYWLQQKFGSKWFQLEGIKSKLPNTSHDPQVFVG-WCNGQTGYPIVDACMRQLASTGYLS 358 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R + AS LV +L DWR G +F SQLLD D+ASN G W + A G D R FN Sbjct: 359 NRGRQLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDPRE-NRQFN 417 Query: 411 PTIQGKRFDPQGTFIRHWL 429 Q + +DP+G F WL Sbjct: 418 LQKQTEIYDPKGEFCAKWL 436 >gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15] gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15] Length = 400 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 110/419 (26%), Positives = 173/419 (41%), Gaps = 29/419 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW R DLR+ D++AL AC + V AVF+ + G +Q F +L + Sbjct: 3 GVVWYRKDLRVDDHEALTRACEE-EKIVRAVFV----RQTADGRGKQQMTFEEETLQSLN 57 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L Q GI Q +++E L S+ + V E + Sbjct: 58 EHLVQLGIELTILQ----GETVEQLTSFIQPEDVVYFH------------RMTGEYEARQ 101 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++ + ++ A + + + I G + Sbjct: 102 EQEVQKRFNTRMYETQTLHLRDDIGSDELKRVFTAFRKRV---EQDGRFAEPIEAPGNIQ 158 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +P+ F GE + L + ++ ++ Y E R+ + +S+LS +L Sbjct: 159 YIELPQTRGGYDPRTAFPFIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSKLSAWL 218 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 + G LSPR+ L+ + + EL+WR+F+ M + Sbjct: 219 ANGSLSPRRVMAELQRTEQEHGANE--STYWLYFELLWRDFFHLTMRETGHRLFRSNGLK 276 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 W D + +W G TG P +DA MR++ GWM NR R ITAS+L+ DL DW Sbjct: 277 DGRLT-WKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASYLIHDLKQDW 335 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 RIG YF QL+D D+ASN G W + A GN + R FNP Q +++DP FIR W Sbjct: 336 RIGARYFEQQLIDYDVASNYGNWAYIAGVGN-ATRTPR-FNPEFQQQKYDPNRAFIRRW 392 >gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC 17025] gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides ATCC 17025] Length = 455 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 100/473 (21%), Positives = 158/473 (33%), Gaps = 57/473 (12%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+V LVW RNDLR+TD+ AL A D + + I P +W S RQ F L Sbjct: 1 MNV-LVWFRNDLRVTDHPALARA----DGHALPLVIVDPAEWADPARSGRQWAFRAECLQ 55 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 L + D + L++ C R+ ++ + + R Sbjct: 56 D----LREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHALDRRVQAWAA 111 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + A P+P + Sbjct: 112 A-------------------------------AGVEFTALAPGPGAPATLTPLPGVEP-- 138 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244 P R P G +L+ F + + +Y + RD P A + S+ Sbjct: 139 --GPIPPARVLRIAEDRCPHRQPGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSR 196 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L+ G L+ + + + ++ L + R + + Sbjct: 197 LSPHLATGTLARVEVREAVTARMEEAGPDWTRSLGAFRAALAQADVARGAVCPPAAPEGA 256 Query: 305 KPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P +++ S +A + G TG P +DAA R L+ GW+ RLR + S + Sbjct: 257 APPEDIFARMKDGIASGAARREALRLGETGLPFVDAAARALSATGWLPARLRGLLVSAAM 316 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 L + R + L D A + R +P DP+G Sbjct: 317 HHLRLCERTAGVVIAAGLTDHAPAVHWAR--------VRRAARARPVDPLGLAAALDPEG 368 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474 F R WLPEL +VP ++ AP W + L YP P+VD A + Sbjct: 369 AFTRRWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATAIREARRRL 421 >gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688] gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688] Length = 467 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 88/440 (20%), Positives = 155/440 (35%), Gaps = 27/440 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPE-----QWRQHGISARQSHFIY 62 + W R DLR+ D AL A + + ++ VF+ P +W ++ + ++ Sbjct: 29 IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 +++ + L G + D + + + V + + + Sbjct: 89 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCEEIAAPEEQAVVAALRAA 148 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSL 177 K +++ P ++ + + L Sbjct: 149 GVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQLPPLPSHA 208 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + AI ++ + FP+G + + Y + Sbjct: 209 LLNAIPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHS 268 Query: 238 AI---------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +S+ SP+L+ G LS RQ W ++ + + EL+WR Sbjct: 269 YKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQAFEAEHGANE--STYWLWFELLWR 326 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + +R + E + D W +G TG P IDA MR+L G+ Sbjct: 327 DHFR--WLHFKHGNRLYRARGLGEAPVPSHDPDHFARWCRGETGQPFIDAGMRELAATGY 384 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + NR+R AS+L+ DL DWR G +F SQLLD D+ SN G W + + G D R Sbjct: 385 LSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPRQ-GRR 443 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 FNP Q + +D G++ W Sbjct: 444 FNPDKQAQDYDADGSYRALW 463 >gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific [Pseudoalteromonas haloplanktis ANT/505] Length = 435 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 98/426 (23%), Positives = 176/426 (41%), Gaps = 24/426 (5%) Query: 11 LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYAS 64 L WL+NDLR+TDN A + VF+ P ++ Q + F+ S Sbjct: 6 LYWLQNDLRLTDNAIFSDLASQQCALDI--VFVINPHWFKNNNYQQKSYGVHKQQFLMQS 63 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++Q++L ++G + + + L + +Q + ++ Y+ Q+ + E R+ LL+ Sbjct: 64 LYELQQALIERGQTLHVLE----GEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLK 119 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + D++ L P + V+A + + + Sbjct: 120 AHCPNVRFTGAQQDTLF------KQSDLPFDLSELPKHFTPFRKKVEAATSPISLSTLPN 173 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGT 242 P + A + + G ++A L ++ + + R+ T Sbjct: 174 GLLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNNT 233 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ S +L+ G +S RQ + ++ + + EL+WRE+++ Sbjct: 234 TKFSTWLAFGCVSARQVYKAVEAY--EHNQITNESTYWIKFELLWREYFKWHALKAGKSL 291 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T+ + + AW G T +P+++A M +LN G++ NR R I AS LV Sbjct: 292 FSFKGQKQTKPLTTFMPN-RFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQIAASCLV 350 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q +FDP Sbjct: 351 NELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTLQFDPHA 409 Query: 423 TFIRHW 428 + W Sbjct: 410 VYTNKW 415 >gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis] Length = 438 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 129/277 (46%), Gaps = 10/277 (3%) Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G Q ++ + + T+ LSPY S+G LS R + RL + + Sbjct: 124 GLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSKIYAQS 183 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 S +L+WREF+ + +A P +IEW +D+ L WK Sbjct: 184 KNHSLPPV-SLQGQLLWREFF-YTVASATPNFTKMVGNPICLQIEWYEDAEKLHKWKTAQ 241 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389 TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N Sbjct: 242 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDSDYSINA 301 Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449 G W W +++ Y RIF P GKR DP+G +IR +LP L N P++YI+ P + + Sbjct: 302 GNWMWLSASAFFHQ-YSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYIYEPWTAPAE 360 Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + YP P+V+HK+ + L +++ Sbjct: 361 AQREAGCIIGKEYPFPMVNHKEVSDNNLQLMKQVREE 397 >gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913] Length = 436 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 102/434 (23%), Positives = 170/434 (39%), Gaps = 24/434 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55 MK L WL+NDLRI DN L I VF+ P ++ Q Sbjct: 1 MKKRI-----LYWLQNDLRIDDNPILNDLSQQQCELDI-VFVINPAWFKSNNYQQKPYGV 54 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ SL ++Q+S+ G + D + L + + ++ Y+ Q + Sbjct: 55 HKQRFLMQSLYELQESVLGLGQTLHILE----GDPVRVLTQRINELGIDEVVYSEQIGVY 110 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E R+ L+ + V+ KS L + + +TPFRK + + Sbjct: 111 EQRQITALKSKC-ATVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGISLSSV 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + G + L+ F Y R+ Sbjct: 170 PFSAKRLPPPIILCAKQPISEPPTGNPLLQGGHKAGLAH---CLQYFSSALPSSYKITRN 226 Query: 236 I-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 +++ S +L+ G +S +Q + + + + EL+WRE+++ Sbjct: 227 ELGGFDNSTKFSSWLAFGCISAKQIFCAVDAY--EAQHGENESTYWIKFELLWREYFKWH 284 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + W QG T FP+++A M++LN G++ NR R Sbjct: 285 AINVKHQLFTFKGKKQSSPL-TTFSPNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSR 343 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 I AS LV +L +DWR G YF QL+D D+A+N G WQ+ A G D R FN Q Sbjct: 344 QIAASCLVNELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQ 402 Query: 415 GKRFDPQGTFIRHW 428 +++DP G +I W Sbjct: 403 TQQYDPHGEYIAKW 416 >gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium EB0_41B09] Length = 424 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 106/434 (24%), Positives = 187/434 (43%), Gaps = 26/434 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64 + W RNDLR+ DN +L A +SD +++ V++ +W + + ++ Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQG 61 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q+ LS G Y+ DD+++ L + + +++ E+ ++ Sbjct: 62 LNALQEKLSNYGHSLNYY----LDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIR-- 115 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 H+V S+ S L I + + V+T FRK + V+ SL I Sbjct: 116 -LRGHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINA 174 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL--------HILRKFCKEKVYYYVEQRDI 236 + FPI E + F K Y + R+ Sbjct: 175 IKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRNE 234 Query: 237 PA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 I +++ SP+L+ G +S RQ ++ L +L + + EL+WRE++R + Sbjct: 235 LMGIDFSTKFSPWLASGYISARQVYDFLLSY--ELNVIKNESTYWIFFELLWREYFRLIF 292 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y + + +++ + + + WK+G T I+A M++L G++ NR+R Sbjct: 293 KKYGKKIFHRYGLGLSDE-KVSHSDENFELWKEGRTASNFINAGMKELKETGFLSNRMRQ 351 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 I AS+LV +L DWR G +F SQL+D D++SN+ W + A G D R FN Q Sbjct: 352 IVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQKQK 410 Query: 416 KRFDPQGTFIRHWL 429 +DP G++ + W Sbjct: 411 STYDPYGSYEKLWC 424 >gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus leucogenys] Length = 543 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 100/425 (23%), Positives = 161/425 (37%), Gaps = 25/425 (5%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 RI L AA + V V+I P + + F+ SL + SL + Sbjct: 56 RIHKQPTLLAAVRGA-RCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 114 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQHRVICKSFD 137 + + + VT+L + E RD +++ + V + + Sbjct: 115 LFVVR----GQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTEN 170 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 L I+ Q + +A+I + V + ++ Sbjct: 171 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDE 230 Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242 Y +++ ++ GE AL L K + K + +R + Sbjct: 231 TYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMSANSLLASP 290 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPYL G LS R + RL + + + + + S +L+WREF+ P Sbjct: 291 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRFD 349 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 350 RME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 408 Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 + DL V W G F LLD D + N G W W + + +F + P G+R DP Sbjct: 409 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPS 467 Query: 422 GTFIR 426 G +IR Sbjct: 468 GDYIR 472 >gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii] Length = 488 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 14/284 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 +P GE AL + + + K + +R + LSPYL G LS R + +L Sbjct: 62 WPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKL 121 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + S +L+WREF+ P + P +I W+K+ L Sbjct: 122 TDLYRKVKKTNTPPL-SLYGQLLWREFFYTAATSNPRFDKME-GNPICVRIPWDKNPEAL 179 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W + TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD Sbjct: 180 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 239 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442 D + N G W W + + +F + P G+R DP G FIR +LP L P +YI+ Sbjct: 240 ADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYD 298 Query: 443 PHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + K + ++YP P+V+H +A + + +Q Sbjct: 299 PWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIYQQ 342 >gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3] Length = 457 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 127/479 (26%), Positives = 215/479 (44%), Gaps = 31/479 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ ++ L R+ N + FI E S ++ F +L Sbjct: 1 MAIAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSS--ASDLKAQFYRGTLQ 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125 + +SL + + + S + + S+C + ++++ + +L + Sbjct: 58 RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110 Query: 126 --RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + R+ + +N + Y V+T F K L D+ + + Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +P ++ D F + + + F + + Y RD TS Sbjct: 171 DFVIASPDDL--------VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTS 222 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G+L + +N L + + +++ ELI+REFY LM YP Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARYDEDEA----NYEAFIRELIFREFYYVLMTQYPETS- 277 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F P +I+W+++ AW +G TGFPIIDAA+ +L G+MHNR+RM+ + FL K Sbjct: 278 YQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DW GE++F L+D D ASN GWQW+ASTG D+V YFR+FNP Q +RFD + Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKAL 397 Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +I+ +LP N + +Y+H + + +L +YP +VDH++ L + A Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456 >gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 141 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 95/141 (67%), Positives = 112/141 (79%) Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 RQLN GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG Sbjct: 1 RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460 D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W +K + L+YP PI Sbjct: 61 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120 Query: 461 VDHKKACHHTLNQYYAAKKQS 481 V+HK+A TL+ Y AA+K + Sbjct: 121 VEHKQARIATLSAYEAARKGA 141 >gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma proteobacterium IMCC3088] Length = 431 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 108/423 (25%), Positives = 176/423 (41%), Gaps = 20/423 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQW-RQHGISARQSHFIYASLLQV 68 L+WL+NDLR+ DN A S+ ++ V+ P W G+ A+++ F+ +L + Sbjct: 4 LLWLQNDLRLADNAGFQLASQASE--LLIVYCWPKPRPWCNLTGLGAQRTRFLSETLEHL 61 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + LS+ G + + L + + L +R NE K L+ L Sbjct: 62 RHQLSELGQDVFV----SVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDALD 117 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + L + + K +TPFRK + + L P Sbjct: 118 --CNVSVTRGNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLA---TPKQLPPKIT 172 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-QGTSQL 245 P + + GEQ AL ++ + ++ Y + R+ S L Sbjct: 173 EVRYGPTPSNNTRPHPTFPYRGGEQEALRRIKHWVFDRQAIATYKQTRNALDGLDNYSAL 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L+ G +SPR + ++ ++ + EL+WREF+ Sbjct: 233 SPWLATGAVSPRTILHHVQRFENEVTANE--STYWVFFELLWREFFYWRAQIDGVHLFLP 290 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + +++ W +G T +P+++A M QL G+M NR R I AS L+ DL Sbjct: 291 YGVARKKQLRTFDPRQFT-RWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAASSLIHDL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 VDWR G +F L+D D+ASN G WQ+ A G+D R FN Q +++DP+G FI Sbjct: 350 GVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRG-GRHFNIDKQTEQYDPKGLFI 408 Query: 426 RHW 428 W Sbjct: 409 TQW 411 >gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group] Length = 681 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + G QNA L F + Y R TS LSPYL G LS R+ +++++ + Sbjct: 222 WSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQ 281 Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + +L + RE+ R+L +P + KP + W D Sbjct: 282 LMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYF 340 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + W+QG TG+P++DA MR GW+H+R+R++ +SF VK L + WR G +YF LLDG Sbjct: 341 KVWRQGRTGYPLVDAGMRDSRATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDG 400 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL S+ GWQ+ + + D RI NP ++G +FDP G ++R WLPEL +PT++IH P Sbjct: 401 DLESDRLGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHP 460 Query: 444 HSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477 + +L NYPLPIV+ A L++ + Sbjct: 461 WDAPESVLQAAGIELGSNYPLPIVELDAAKTRLQDALSEMWEL 503 >gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102] Length = 703 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 97/511 (18%), Positives = 169/511 (33%), Gaps = 78/511 (15%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI---- 53 M ++T + + LR+DLR++DN L+ + D ++ V++ Q G Sbjct: 1 MPSSTN--ILIYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDG 58 Query: 54 ------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95 ++ FI S+ +Q+S G D L Sbjct: 59 SKSPYPEARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLK 118 Query: 96 SYCLQQ---RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 +Q + E + + D+ + Sbjct: 119 GLTEKQQTIGAVWMTLEDAVEEKRDEKAVSSICSENNIEFKLWQDEKYFVDDRDTELENA 178 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--------- 203 + + L + +LP P+ P ++ + PF+ Sbjct: 179 HDLPDIFTTYRKTQEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELEA 238 Query: 204 ----------------------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQ 240 + P+ + + Y R+ + Sbjct: 239 ALLKPVEDVLDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNGLLGVD 298 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREF 290 +++LS YL++G L+ RQ + + + G + EL+WR++ Sbjct: 299 FSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRDY 358 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLN 344 R + K K + + + G TG IDA+ R+L Sbjct: 359 MRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAEILKRFLAGTTGMGFIDASQRELL 418 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G+ NR R ASFL K L +DWR G E++ L+D D++SN WQ+ A GND Sbjct: 419 HTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGNDPRG 478 Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 RIFNP Q +D QG +++ W+PE + Sbjct: 479 EARIFNPVKQAFDYDKQGEYVKAWVPETRQL 509 >gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790] Length = 719 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 145/400 (36%), Gaps = 26/400 (6%) Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 + D ++ L + + + L RRD + + S D + S Sbjct: 189 YGDPVDILSHFVDR-GWSILTMETPTSRYGKRRDTRAQSVCGDALRFISGDGLIRDAEWS 247 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 N + + + +LT P + + Sbjct: 248 RANWKSHITEWLA----------AEQHTPEWSGDTTQLTIPTGITPSVVEKTHKINPTKK 297 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLK 264 M P G A + +++ Y P T LSPY + G+LS RQ + Sbjct: 298 MVPTGTHRAATTQLRAFVDQIGSYPSNISAPQDARTGTSGLSPYFNFGLLSIRQVHQYVN 357 Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324 + G + + LIW Y +A + + E + L+ Sbjct: 358 NNTPE-----CRGRRMFTSRLIWNCHYNQKLADWAGWTDRAVNPAFEEFNADRHNPALVD 412 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AWK G TGFP++DA+MR L GW++ R+R + S L W IG ++F L+D D Sbjct: 413 AWKHGQTGFPMVDASMRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLIDSD 472 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N WQ + G P R++NP Q + D G +I W+PEL+++P Q+ P Sbjct: 473 VGINYTQWQ--SQAGLIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPRPE 530 Query: 445 SWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 + +YP P+VD ++Y + Sbjct: 531 RTPLAVQSECNVIIGDDYPRPVVDFDARRETFWSRYERRR 570 >gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7] Length = 367 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 138/369 (37%), Positives = 202/369 (54%), Gaps = 6/369 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L+WLR+DLR DN AL AA +AV++ +P QWR H + + F +L+++ Sbjct: 1 MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K+L + + + +D + E L C Q +V L N++Y INE RRD+ ++K ++ Sbjct: 59 EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118 Query: 129 HRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L PGSIL ++V+T F+K L +A + P + Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178 Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + IP F P +A+ ++P GE A + F E++ YY ++RD P GTSQ Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL+ GV+SPRQC + G +W+NEL+WREFY+H + YP V Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + F P TE ++W L+AW++ TG PIIDAAMRQL GWMHNRLRM+ A FL K+ Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358 Query: 365 LLVDWRIGE 373 LL+DWR GE Sbjct: 359 LLIDWREGE 367 >gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium HTCC2207] Length = 447 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 101/435 (23%), Positives = 170/435 (39%), Gaps = 23/435 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQH-GISARQSHFIY 62 V L W +DLR+ DN A K+I ++ A W+Q +S R+ F++ Sbjct: 3 KVGLFWFNHDLRMDDNAA-LVLAAAEVDKLICLYCADTTNTGPGWQQPAKLSPRRREFLF 61 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 SL ++ LSQ G +E + V+ L+ E R Sbjct: 62 ESLQDLETQLSQYGQKLVVR----IQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNT 117 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-------VYTPFRKALIQNLVQADLR 175 L KR +S ++ P + ++I + A + Sbjct: 118 LRKRYPMLEFNQSHTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPEK 177 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQR 234 P ++ + +F G L+ + + Y + R Sbjct: 178 LPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQTR 237 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L+ G LSPR+ +L+E + + EL+WRE+++ Sbjct: 238 NGLDGMDYSTKFSPWLANGTLSPRRIVQQLQEY--EARAGANDSTYWIFFELLWREYFQW 295 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + I + + W G T + II+A M+QLNT G++ NR Sbjct: 296 YGHRHQQQLYAFTGIAQSAPTTSFYP-ERFKKWCAGNTPYAIINACMKQLNTTGYLSNRG 354 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS V +L +DWR G Y QL+D D+ASN G WQ+ A G D + R F+ Sbjct: 355 RQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGHRR-FDLKK 413 Query: 414 QGKRFDPQGTFIRHW 428 Q + +DP+ F++ W Sbjct: 414 QAQIYDPKNQFVQRW 428 >gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa] gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa] Length = 573 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 105/445 (23%), Positives = 177/445 (39%), Gaps = 47/445 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL A D V VFI P++ Q ++ S Q Sbjct: 4 SKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSFAQ 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL ++ +++ T + +N Y+ + RD ++++L Sbjct: 61 LGQSLE---------ISCTVGALLDSIETI----GATTVAFNHLYDPVSLVRDHNIKEKL 107 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I + L P I + + + +R ++ P + G Sbjct: 108 VELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVPAAG 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++ +G + + +S LS Sbjct: 168 TIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLR-----VGSFSSLLS 222 Query: 247 PYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 PYL G LS R+ + ++ + + K +L + RE R+L +P Sbjct: 223 PYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYLCFNFP-FT 281 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + WN + +AW+QG TG+P++D MR+L IGW+HNR+R I +SF V Sbjct: 282 HERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIRAIVSSFAV 341 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ WR G ++ GWQ+ + + D+ R+ NP IQG +FDP+G Sbjct: 342 KVLLLPWRWG-------------LNDILGWQYISGSLPDAHELERLDNPEIQGSKFDPEG 388 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL 447 + L +PT++IH P Sbjct: 389 EY-------LTRMPTEWIHHPGDAP 406 >gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius HKU10-03] Length = 474 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 107/389 (27%), Positives = 168/389 (43%), Gaps = 16/389 (4%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 LD+ ++ + + + + S + Q Sbjct: 78 LDTLANALSLSHVLMAKDIMSYHRASYDYPHMKKRFEKHHISVIGQRVNHYFQPSKTFNQ 137 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 ++ Y F N ++ + + + D + Sbjct: 138 QHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQYAAKGMNQSDLKFDKHTDEEAYARQS 197 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + R+ S LS YL+ G+L R+ N L + Sbjct: 198 WNHFLNHEITLYSQLADDITRNNI-----SGLSRYLAYGLLDIREVINHLL----EGYDS 248 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 ++ S++ EL++REFY LM YP + F +EW++ +AWK G TG+ Sbjct: 249 DENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHFEAWKNGETGY 307 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 PIIDAAM++L G+MHNRLRMI + FL K L ++W GE +F L+D D ASN GWQ Sbjct: 308 PIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDYDNASNVHGWQ 367 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451 W+ASTG D+VPYFR+FNP Q +RFD G FI+ L L +V +YIH P ++ Sbjct: 368 WSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNPSQYVTAIQQN 427 Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYA 476 + +YP I++HK++ + + Q+ Sbjct: 428 HQIKIGEDYPKAIINHKESRDYVMQQFKQ 456 >gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19] Length = 280 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 129/247 (52%), Gaps = 21/247 (8%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + RD P TS LSP+L G +SPR+ L ++ V + + A + EL+WRE Sbjct: 46 YEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-DKVVRSTPRLVAPAEKFRKELVWRE 104 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + + + + F W +AW +G TG+P++DA M+QL G+M Sbjct: 105 -FNYNILDLQPELHTRNFRDDFSTFPWQSSDKDFRAWARGETGYPLVDAGMKQLWQTGFM 163 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RM+ ASFLVK LL+DWR GE++F LLD D ASN G WQW A G D+ PYFR+F Sbjct: 164 HNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADPASNPGNWQWVAGCGADAAPYFRVF 223 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 NP Q +FDP + R + DK ++ YP PIVDH A Sbjct: 224 NPITQADKFDPDDIYRRKF-------------------DKPRGTVPYPRPIVDHAFARER 264 Query: 470 TLNQYYA 476 L+ Y + Sbjct: 265 ALDAYRS 271 >gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens] Length = 461 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 10/246 (4%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL + + + S +L+WREF+ P Sbjct: 135 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 193 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 194 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 252 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G F LLD D + N G W W + G +F + P G+R DP Sbjct: 253 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLS-CGAFFQQFFHCYCPVGFGRRTDP 311 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 312 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 371 Query: 475 YAAKKQ 480 +Q Sbjct: 372 KQIYQQ 377 >gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4] Length = 446 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 101/434 (23%), Positives = 166/434 (38%), Gaps = 23/434 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGIS 54 MK + L W N+LRI DN L + +++I ++ ++ Sbjct: 1 MKNK----IGLYWFTNELRIHDNPLLAE-VDKAVSELICIYCYPKLPPFLTHFAQEAQFG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + F+ SL + SL+ + Q + + + + VT L+ + + Sbjct: 56 QNKLRFLDESLHCLNLSLNARNQRLQVVDLLPY----QAIKHAIEKLDVTHLYCDAFSGV 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E + H IC+ S+ L +L+ + L++ L + Sbjct: 112 DEQDVIDKIRSDFPHLTICQREVRSLFALDD--LPFSLENLPGTFTKFRKLVEKLPVSKP 169 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + + + + D + G ++ Sbjct: 170 VATVSSLPPIPEGLALPTLRLIGDGKSYLFNGGEQAGLEHCQQYFSSISASDYKQTRNGL 229 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D ++ +++ SP+L+ G LSP+ L + + + EL+WRE++ Sbjct: 230 DG--MEYSTKFSPWLAHGCLSPKVICAMLSRY--EHVNGANDSTYWIYFELLWREYFYWY 285 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 Y I + Q WKQG T FPI++A M QLN G+M NR R Sbjct: 286 ARKYKHQLFRFGGIRNQVPLTSFYGHRFQQ-WKQGETPFPIVNACMHQLNETGYMSNRGR 344 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 + AS LV +L +DWR G YF SQL+D D+ASN G WQ+ A G D R FN Q Sbjct: 345 QLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGA-RQFNLKKQ 403 Query: 415 GKRFDPQGTFIRHW 428 + +DP FI W Sbjct: 404 TEIYDPNMAFINRW 417 >gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810] Length = 445 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 171/435 (39%), Gaps = 25/435 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54 MK + L W DLR+ DN L A D +++ ++ TP ++ + Sbjct: 1 MKKK----IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + FI ASL ++ +L Q G + + L VT L+ + Sbjct: 56 RARQKFIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLGVTHLYADAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E L+ H VI + S+ S L L + ++ + D+ Sbjct: 112 DEQSILHKLQDEYPHLVIVQHAVRSLFDE--SKLPFTLPDLPETFTQFRKCVEGI---DI 166 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 RL + +P + F H R F Y E R Sbjct: 167 AHPIDAPSRLPPTPKDAQLPTLSSFYFDESALFSGGEWSGLAHCRRYFSSGLASSYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SPR + LK+ + + EL+WRE++ Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y I + Q WK G T +PI++A M QL+ G+M NR Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYPIVNACMHQLDHTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 403 QTQMYDPNHEFIVRW 417 >gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297] Length = 433 Score = 180 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 93/423 (21%), Positives = 173/423 (40%), Gaps = 18/423 (4%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASLL 66 +W D R+ DN AL A + + VF+ +++ + + F+ SL Sbjct: 1 MWFTQDQRLDDNPALRLAAEADEM--LCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLS 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ + L G + + + + + ++ R +E+R+ + LE + Sbjct: 59 ELNQRLQLHGQRLLV----VYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 C++ ++ + + + + + L + V + ++P +T Sbjct: 115 FPETEWCQADAATLFE--DDQVAGLSRSWPMSFSAFRRLAERWVVPAVTAMPQLPNTITQ 172 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQL 245 ++ +P + + + H+ + Y R+ I +S++ Sbjct: 173 QISQLTLPDWLPNARASHSMFDGGESEALRHLDCYLASDYPQTYKRDRNAIDDWDSSSKM 232 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L+ G LS R+ +L E G EL+WRE+++ L + Sbjct: 233 SPWLNAGNLSARRLKQKLDEYDQQHGASD--GTHWLFVELLWREYFQWLAQSIGTKLFHF 290 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + + W++G T + I++A MRQL G++ NR R I AS LV +L Sbjct: 291 QGLSEHKPLTSFYS-DRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQIAASALVNEL 349 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 +DWR G +F L+D D+ASN G WQ+ A G DS R FN Q + FD G+F Sbjct: 350 ALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTELFDADGSFR 408 Query: 426 RHW 428 W Sbjct: 409 ARW 411 >gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags: Precursor gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa] Length = 745 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 97/539 (17%), Positives = 169/539 (31%), Gaps = 96/539 (17%) Query: 8 SVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------- 53 V + +R +LR++DN + + + ++ V++ +Q G Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64 Query: 54 ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYC 98 ++ F+ S+ ++ SL G +E L + Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 Q + + E + D+ L+ L Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDV 184 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----------------- 201 + I+ L + ++LPVP ++ PF Sbjct: 185 FTTYRKQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPV 244 Query: 202 --------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLS 246 ++ P I + Y + R+ +++LS Sbjct: 245 KNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLS 304 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMA 296 YL+ G ++ RQ + L K G + EL+WR++ R Sbjct: 305 AYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQ 364 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQA------------------------WKQGYTG 332 Y +D + G TG Sbjct: 365 KYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTG 424 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++SN W Sbjct: 425 MGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANW 484 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450 Q+ A GND RIFNP Q +D GT++R W+PE+ + + + ++ Sbjct: 485 QYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTASKED 543 >gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus] Length = 450 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 157/448 (35%), Gaps = 35/448 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R+ LR+ DN AL + VFI E + F++ L+ + + Sbjct: 7 IHWFRHGLRLHDNPALLEGMTLGK-EFYPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDE 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L G D L+ V L + E RD+ ++ + Sbjct: 66 QLKAAGGRLFVFH----GDPCLIFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCKEM 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + C L P I+ + + + ++ + Sbjct: 122 KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTEIGHPPRPMPDPILTKVNMKIP 181 Query: 190 PSNIPRF----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKV------YYYVEQ 233 R + ++ GE AL + R + Y Q Sbjct: 182 SDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCLPNQ 241 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---------GAFSWLNE 284 + LS YL G LS R+ + ++ + + ++ + Sbjct: 242 YMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHLTAQ 301 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 +IWRE++ + K P IEW +D L+AW G TG+P IDA M+QL Sbjct: 302 VIWREYFYTMSVGNIHFNKMKE-NPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQLK 360 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND-S 402 GW+H R TA FL + DL + W G + F LLD D + G W W +S+ + Sbjct: 361 YEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFEKF 420 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 + F P G+R DP G ++R ++P Sbjct: 421 LQCPNCFCPVRYGRRMDPTGEYVR-FVP 447 >gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1] Length = 472 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 167/437 (38%), Gaps = 15/437 (3%) Query: 1 MKATTAMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHG 52 M MS + W +DLR+ DNK L A + D ++ V+ Sbjct: 21 MTLGNGMSKRRGIYWFNHDLRLHDNKLLQKASEHVD-RLHCVYFDELKTMYDRRFLPVEI 79 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F +L ++ +SL Q G V ++ D+++ L+ +T L+ Sbjct: 80 DDSAKREFKMQALGELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSA 139 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + + ++ D L + + +T F+ + +V + Sbjct: 140 SWY-IDYVVTKALLKRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVPS 198 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 ++ + + + H+ F + Y Sbjct: 199 PSQTTTQLPRPMNNRDGLPASYGCEPSSLKLHSSVRGGELAGLGHVRDYFATQAALSYKS 258 Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ +++ S +L+ G +SPR N+L + + L EL+WRE++ Sbjct: 259 TRNELDNWSSSTKFSLWLANGNVSPRAVVNQL--HRFEQKHGSNESTYWILFELLWREYF 316 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 Y + I + S L Q W +G T FPI++A M QL G+M N Sbjct: 317 HWYSHKYGAKLFAFGGIQDKRPLTTFYASRLRQ-WVEGNTPFPIVNACMNQLRETGYMSN 375 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R + AS LV +L +DWR G YF L+D D+ SN G WQ+ A G D R F+ Sbjct: 376 RGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRG-NRKFDL 434 Query: 412 TIQGKRFDPQGTFIRHW 428 Q + +DP+ FIR W Sbjct: 435 DKQSQLYDPESVFIRKW 451 >gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens] Length = 461 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 10/246 (4%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL + + + S +L+WREF+ P Sbjct: 135 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 193 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 194 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 252 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G F LLD D + N G W W + + +F + P G+R DP Sbjct: 253 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 311 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 312 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 371 Query: 475 YAAKKQ 480 +Q Sbjct: 372 KQIYQQ 377 >gi|223944515|gb|ACN26341.1| unknown [Zea mays] Length = 470 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 14/263 (5%) Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLN 283 Y R TS LSPYL G LS R+ +++++ + D + +L Sbjct: 1 MDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLR 60 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 + RE+ R+L +P KP + W + + W+QG TG+P++DA MR+L Sbjct: 61 SIGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 119 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GWQ+ + + D Sbjct: 120 WATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 179 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457 RI NP +G +FDP G ++R WLPEL +PT++IH P + +L NYP Sbjct: 180 ELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYP 239 Query: 458 LPIVDHKKACHH---TLNQYYAA 477 PIV+ A L++ + Sbjct: 240 RPIVELDAANSRLQDALSEMWEL 262 >gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102] Length = 626 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 95/534 (17%), Positives = 151/534 (28%), Gaps = 82/534 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W R DLR+ D+ AL AA A + VF P + + ++ + Sbjct: 7 IYWFRTDLRLHDSPALTAALELEPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQNDLSA 66 Query: 71 SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-------- 120 S+++ + +VT L + + + RD Sbjct: 67 SITKLNPKSKLFVLREG----PQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAAR 122 Query: 121 -------KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + L + S L A A + + Sbjct: 123 EAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDPGE 182 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + T P + P G+ + + Sbjct: 183 MPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETMEELGFPSATTPHRGG 242 Query: 234 RDI---------------------------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 Q T+ LSP++ G LS R+ + + + Sbjct: 243 ESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFYWQAVDA 302 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----- 321 S +L++R+ Y A + I W+ S Sbjct: 303 VKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGNAYCRFIPWHLPSKVNTET 362 Query: 322 ----------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD- 364 + WK G TGFP IDA MRQL GW+H+ R A FL + Sbjct: 363 GLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVACFLTRGG 422 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +DW G E F L+D + A N G WQW + YFR ++P G+++D +G Sbjct: 423 CYIDWERGCEVFEEWLIDHEPACNAGNWQWLS-CAAFFSQYFRCYSPVSFGQKWDKEGLL 481 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 I L + YP P+ D + L A Sbjct: 482 I------LRK-----RGQAWCNGLDDREEGTYPKPMFDFNERRTACLAAMKKAY 524 >gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14] Length = 639 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 119/260 (45%), Gaps = 26/260 (10%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSPYL G +S R ++R+++ + S +L+WREF+ P Sbjct: 346 TTSLSPYLYFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQF 405 Query: 302 CMGKPFIPWTEKIEWNKD------------------SHLLQAWKQGYTGFPIIDAAMRQL 343 + +AWK+G TG+P IDA M QL Sbjct: 406 DKMEGNPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQL 465 Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 GWMH+ R A FL + DL + W G E F +L+D D + N G W W +++ + Sbjct: 466 KEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFT 525 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNY 456 YFR+++P+ GK++D +G FIR ++P L +P++YI+ P + +Y Sbjct: 526 A-YFRVYSPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDY 584 Query: 457 PLPIVDHKKACHHTLNQYYA 476 P PIVDHK A + A Sbjct: 585 PFPIVDHKIAMRRCMAGMKA 604 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 13/146 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDA-------KVIAVFIATPEQWRQHGISARQSHFIY 62 ++W R DLR+ DN AL+ A ++ ++I ++I + ++ + F+ Sbjct: 60 AIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYII--HRPKRLLCGVNRFQFLL 117 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 S+ + ++++ +G + + I+ ++T +F+++ E + RD Sbjct: 118 ESVGTLAEAIAARGSRLIIAR----GEGIDVFRRILPAWKITHIFFDQAIEPFAIARDHQ 173 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSIL 148 + + + L + Sbjct: 174 VRELAASLNVHVETTHGYTLYDQDKV 199 >gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis thaliana] gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana] Length = 445 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 98/422 (23%), Positives = 146/422 (34%), Gaps = 26/422 (6%) Query: 5 TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52 T+M+ L+W R LR+ DN AL A S+ VF+ P Sbjct: 18 TSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFM-YPVFVIDPHYMESDPSAFSPGSSR 76 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLF 107 + F+ SL + SL + G + + + L C + + Sbjct: 77 AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYY 136 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 ++ + +E + + G KV A + Sbjct: 137 QALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSE 196 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-----ALHILRKF 222 ++ L PS + QA F GE I K Sbjct: 197 LVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA 256 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 T+ +SPYL G LS R + L+ + D+ S L Sbjct: 257 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPV-SLL 315 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +L+WREF+ P+ K ++I WN+D +L AW+ G TG+P IDA M Q Sbjct: 316 GQLLWREFFYTTAFGTPNFDKMK-GNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQ 374 Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 L GWMH+ R A FL + DL + W G + F L+D D A NNG W W + + Sbjct: 375 LLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFF 434 Query: 402 SV 403 Sbjct: 435 YQ 436 >gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 441 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 97/429 (22%), Positives = 174/429 (40%), Gaps = 16/429 (3%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHF 60 M+V L WL DLR+ DN+ + + ++ V+ P +++ + + F Sbjct: 1 MAVRALYWLTQDLRLHDNEIFHQ-VRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRF 59 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + +L++ G Q + + L + Q R+ ++ +R E ++ Sbjct: 60 LLQSLQTLHSNLTRFGQQLVVVQA----EPLLSLPALIQQHRINVIYRSRHCGWYEQQQW 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + +++ H + ++ + + + V L Sbjct: 116 QYIKQYFPHLRFVEVDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYL 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAI 239 + + +H+ + F + Y E R+ Sbjct: 176 PPPPKMNSSDYLDIGRVYIADNSNVEWQGGENAALMHLKQYFSCDAPANYKETRNALAGW 235 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + +++ SP+L+ G LS + LK+ ++ + EL+WREF+ A Sbjct: 236 ELSTKFSPWLACGSLSAKTIMAALKDYEQNVTANS--STYWIFFELLWREFF-QWHAHVV 292 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +++ + + W G T +P+++A M+QLN G+M NR R I AS Sbjct: 293 GRHLYRFSGVQNKRLLTSFYPSRFKQWCSGSTPYPLVNAFMKQLNQTGYMSNRGRQIVAS 352 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 LV +L +DWR G YF QL+D D+ASN G WQ+ A G DS R F+ Q + FD Sbjct: 353 CLVNELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWFDIEKQTRLFD 411 Query: 420 PQGTFIRHW 428 P FIRHW Sbjct: 412 PDHAFIRHW 420 >gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037] gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037] Length = 445 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 166/435 (38%), Gaps = 25/435 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54 MK + L W DLR+ DN L A D +++ ++ TP ++ + Sbjct: 1 MKKK----IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + FI ASL ++ +L Q G + + L VT L+ + Sbjct: 56 RARQKFIDASLCELNDALGQLGQRLWTLDLPPY----QALRYAIQYLGVTHLYADAMAGS 111 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +E L+ H VI + S+ + + D+ Sbjct: 112 DEQSILHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDL-----PETFTQFRKCVEGIDI 166 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 RL + +P + F H R F Y E R Sbjct: 167 AHPIDAPSRLPPMPKDAQLPTLSSFYFDESALFSGGEWSGLAHCRRYFSSGLASSYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SPR + LK+ + + EL+WRE++ Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y I + Q WK G T +PI++A M QLN G+M NR Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTQYPIVNACMHQLNHTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 403 QTQMYDPNHEFIERW 417 >gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A] gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 722 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 96/533 (18%), Positives = 167/533 (31%), Gaps = 96/533 (18%) Query: 14 LRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------------- 53 +R +LR++DN + + + ++ V++ +Q G Sbjct: 1 MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60 Query: 54 ------SARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVT 104 ++ F+ S+ ++ SL G +E L + Q Sbjct: 61 GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 + + E + D+ L+ L + Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYRK 180 Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----------------------- 201 I+ L + ++LPVP ++ PF Sbjct: 181 QIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKNFLKD 240 Query: 202 --------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIG 252 ++ P I + Y + R+ +++LS YL+ G Sbjct: 241 LPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLSAYLAQG 300 Query: 253 VLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ RQ + L K G + EL+WR++ R Y Sbjct: 301 CVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDKL 360 Query: 303 MGKPFIPWTEKIEWNKDSHLLQA------------------------WKQGYTGFPIIDA 338 +D + G TG +IDA Sbjct: 361 FRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLIDA 420 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 + R+L G+ NR R ASFL K L +DWR G E++ L+D D++SN WQ+ A Sbjct: 421 SQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGV 480 Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450 GND RIFNP Q +D GT++R W+PE+ + + + ++ Sbjct: 481 GNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTASKED 533 >gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65] Length = 440 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 97/425 (22%), Positives = 159/425 (37%), Gaps = 19/425 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYAS 64 L DLR+ D+ L A S+ ++ V+ P+ + + ++ F+ Sbjct: 7 SLFVFSKDLRLHDHPGLKQANDLSE-RLACVYFLSPYEFEPKSFSVCPMGKQRYEFLRQG 65 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++ SL+ Q + L+ Q ++ +F +R E + Sbjct: 66 LCDLRNSLNDIDHELHVFQ----EKVAPGLERIIEQNKIEAVFASRCAGTYE----NQVW 117 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 LQ R +I L + + L + ++ Sbjct: 118 VSLQKRQPNLKIHLVDSHTLFNIDQPDLSKSFYNSFSQFRRQAEKWPQPLPMATILSLPA 177 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTS 243 PV + D + + ++ H+ F Y R+ + +S Sbjct: 178 AMPVATDSARINLDDNRSSALCITGGEQKGLEHLYDYFNGSYALQYKATRNALDGWENSS 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + S +L+ G LS R L++ + L EL+WREF++ FY Sbjct: 238 KFSYWLAQGSLSVRLILQELRQ--FESLHSNNESTEHLYMELLWREFFQWYSHFYGKQLF 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 I + W +G+T +P+++A M QL T G+M NR R I AS L+ Sbjct: 296 YFSGIQKKRPLTTFYPQAFRM-WLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLLN 354 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 +L VDWR G + F LLD D+A+N G WQ+ A G D R FN Q + +DP Sbjct: 355 ELKVDWRAGAQAFEHYLLDYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDNL 413 Query: 424 FIRHW 428 FI W Sbjct: 414 FIDKW 418 >gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001] Length = 705 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 93/529 (17%), Positives = 168/529 (31%), Gaps = 89/529 (16%) Query: 11 LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQW------------------- 48 + R+DLRI DN ++ A + V+ +++ Q Sbjct: 8 IYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSPYPEARS 67 Query: 49 ---RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQR 102 + ++ F+ S+ +++SL DD + + Sbjct: 68 QIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFADKKQKVG 127 Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 + E + D+ + + + Sbjct: 128 AVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSELADVFTAF 187 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVT-------------------------------PS 191 + + L + +LP P P P Sbjct: 188 RKTQEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAALLKPLKSPF 247 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250 N F +++ P + + V Y + R+ + + +++LS YL+ Sbjct: 248 NEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVDFSTKLSAYLA 307 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPS 300 +G L+ RQ L + + G + EL+WR++ R + + Sbjct: 308 LGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMRLCTMKFGA 367 Query: 301 VCMGKPFIPWTEKIEW------------------NKDSHLLQAWKQGYTGFPIIDAAMRQ 342 +W + +LQ + G TG +IDA+ R+ Sbjct: 368 KLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTGMGLIDASQRE 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+ NR R ASFL K L +DWR G E++ L+D D+ SN WQ+ A GND Sbjct: 428 LYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNWQYVAGVGNDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKN 450 RIFNP Q +D G +++ W+ E V + + + + Sbjct: 488 RGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEE 536 >gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23] Length = 695 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 100/513 (19%), Positives = 168/513 (32%), Gaps = 88/513 (17%) Query: 11 LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIA------------TPEQWRQHGI-- 53 + LR DLR+ DN L+ A + ++ V++ EQ Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67 Query: 54 --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 ++ F ++ +++SL + G S D ++ Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY---KVYTPFR 162 + + E +++ L + + + L+ Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFKLWKDEKYFVDDRDTGLENPADLPDVFTTY 187 Query: 163 KALIQNLVQADLRSLPVPAI------------------------------RLTGPVTPSN 192 + + L + + LP PA RL PV Sbjct: 188 RKSQEPLREKPRKVLPRPAKSALPAFPQEGSIPAQAHPFLSPVSLEDLQKRLVKPVENIM 247 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPA-IQGTSQLSPYLS 250 F GE + LR K + R+ + + +LS YLS Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLS 307 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPS 300 +G L+ RQ L + + G EL+WR++ R A + Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367 Query: 301 VCMGKPFIPWTEKIEWNKDS------------------HLLQAWKQGYTGFPIIDAAMRQ 342 + + +L+ ++ G TG +IDA+ R+ Sbjct: 368 KLFRLSGFRQDSSYDKKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRE 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G+ NR R ASF K L +DWR G E++ L+D D++SN WQ+ A GND Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 R FNP Q +D +G ++R W+PEL + Sbjct: 488 RGDARTFNPVKQAFDYDKEGIYVRMWVPELQGL 520 >gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030] gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466] gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034] gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030] Length = 445 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 162/435 (37%), Gaps = 25/435 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGIS 54 MK + L W DLR+ DN L A D +++ ++ TP ++ + Sbjct: 1 MKKK----IGLYWFTFDLRLHDNSLLVDASSFLD-ELVCLYCRPSVTPFLHHFAQEVTLG 55 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 + FI ASL ++ +L Q G + + + + E Sbjct: 56 RARQKFIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTH-LYSDAMAGSDEQ 114 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + + + + L P ++ + + I + + A Sbjct: 115 SILHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPS 174 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 R P+P P + F H R F Y E R Sbjct: 175 RLPPMPKGAQL--------PTLSSFYFDESALFSGGEWSGLAHCRRYFFSGLASSYKETR 226 Query: 235 DIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + + +++ SP+L++G +SPR LK+ + + EL+WRE++ Sbjct: 227 NGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQY--EQTQGANDSTYWIYFELLWREYFYW 284 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 Y I + Q WK G T +PI++A M QLN G+M NR Sbjct: 285 YARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYPIVNACMHQLNHTGYMSNRG 343 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 R + AS LV +L +DWR G YF +QL+D D+ SN G WQ+ A G D R FN Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEK 402 Query: 414 QGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 403 QTQMYDPNHEFIERW 417 >gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio metschnikovii CIP 69.14] Length = 451 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 101/437 (23%), Positives = 172/437 (39%), Gaps = 24/437 (5%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHF 60 MS+ L W NDLRI+DN L A NS I + F Sbjct: 1 MSIRSLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRF 60 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + SL + L G Q +++ L + L+ + + + + Sbjct: 61 LLESLADLDAKLQTLGQSLQI----ATGEAVSQLCQFIELTEANHLYVSESVDFA-IHQT 115 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQA 172 + ++ S + L + + ++ FRK + Q+ Sbjct: 116 LREVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARWN 175 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P++ + S R + ++ H+ F + Y + Sbjct: 176 SDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDASLIYKQ 235 Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +++ SP+L+ G LS + RL + + EL+WRE++ Sbjct: 236 TRNALDEWESSTKFSPWLANGCLSIGRLLARLNDYETQRGANE--STYWIYFELLWREYF 293 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + Y + I + +++W G T +PI++AAM+QL G++ N Sbjct: 294 QWYALKYGAQLFQFSGIKGQVPLTSYYP-QRMRSWINGTTPYPIVNAAMKQLKATGYLSN 352 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R + AS LV +L +DWR G +YF SQL+D D+ASN G WQ+ A G D + R F+ Sbjct: 353 RSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRR-FDL 411 Query: 412 TIQGKRFDPQGTFIRHW 428 Q +DP+ +FIRHW Sbjct: 412 AKQTALYDPELSFIRHW 428 >gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI 77-13-4] Length = 640 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 85/533 (15%) Query: 11 LVWLRNDLRITDNKALYA-ACHNSD-AKVIAVFIATPEQW-------------------- 48 + LR DLR TDN L+ A + ++ V++ P Q Sbjct: 8 VYLLRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQ 67 Query: 49 --RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105 R ++ F S+ ++ SL G S D + + + V Sbjct: 68 VGRFWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDA 127 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 ++ EV + + + ++ Y ++ L Sbjct: 128 VWMTEDVSSEEVDDQDAVSAVCSEKSVGFKLWRDDKYFIDDNPKELPDVFTSYRKTQEPL 187 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-------------------- 205 + ++ R L P + P ++ + Sbjct: 188 RERPRRSLPRPQAGSLPPLPPWTPPQDAPFQVPDTYEEFERRLLQPIDYMLANPPVLPQD 247 Query: 206 ----PMFPIGEQNALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQC 259 F GE A LR + + Y E R+ +++LS YL++G +S R Sbjct: 248 AKSAHPFDGGESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCISARSI 307 Query: 260 WNRLKEEFVDLLIKP----------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 L + G + EL+WR++ R + + Sbjct: 308 HEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFRVSGFK 367 Query: 310 -------------------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + + ++ + +G TG IDA+ R+L G+ Sbjct: 368 GATGQYEKKWKTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYHTGYTS 427 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR R ASF K L +DWR G E++ L+D D++SN WQ+ A GND RIFN Sbjct: 428 NRARQNVASFFSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGDARIFN 487 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVD 462 P Q +D G ++R W+PE+ + + + + ++ L IVD Sbjct: 488 PVKQAFDYDNNGAYVRTWVPEVKYIEKLENVFQVWTTDEEELLKYG----IVD 536 >gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] Length = 462 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 194/456 (42%), Gaps = 38/456 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53 MK + L NDLRI DN+ LY A + D K+I V I P + ++ Sbjct: 1 MKK-----IGLYLFTNDLRINDNQLLYYAAQSVD-KLICV-IVEPTLVRFSADLAQEQSY 53 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQ 111 SA + F+ S+ ++ +L + G + ++ D + + L + Q VT F N Sbjct: 54 SAHRQAFVSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAH 113 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 +E + + ++++ + + S L + ++ +T FRK + V Sbjct: 114 CGYDERQLIRSIQRQSPNL-VMCLPHHSTLFDSHELPFELSKVPSSFTKFRKLVEHLDVN 172 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVY 228 + + + +T ++ F P I + H+ F + + Sbjct: 173 RNETVISALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDYAF 232 Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y + R+ I+ +++ SP+L++G +SP+ + LK+ + + EL+W Sbjct: 233 NYKQTRNVFDGIENSTKFSPWLALGCVSPKTIYCHLKQ--FEADHGINDSTYWIYFELLW 290 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQLNTI 346 RE++ S G+ + +L A WK G T +PI+DA MRQLNT Sbjct: 291 REYFYWKCLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTT 350 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-------- 398 G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 351 GYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQ 410 Query: 399 ------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 411 TNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 446 >gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980] gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980 UF-70] Length = 651 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 89/530 (16%), Positives = 167/530 (31%), Gaps = 89/530 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWR------------------ 49 + +R DLR+ DN L++ HN D ++ +++ +Q Sbjct: 8 IYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYPEAR 67 Query: 50 -----QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL----Q 100 ++ F+ S+ ++ + G + ++ + + Sbjct: 68 SQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIRVGMVDEIVKGLIERFEEGAGSK 127 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 + E R D+ + + + Sbjct: 128 VSAVWMTSEEGVEEKREERSTKKICDKAGVDFKLWQDEKYFVDDRDLPFEDPKDLSDIYT 187 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA----------------- 203 + ++ L A LP P + P P+ + Sbjct: 188 TYRKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEEIEAALLKPINSQP 247 Query: 204 --------------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPY 248 + P + + Y R+ +++LS Y Sbjct: 248 LVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNGLMGTDFSTKLSAY 307 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKS------------GAFSWLNELIWREFYRHLMA 296 L++G ++ RQ + + G ++ EL+WR++ R Sbjct: 308 LALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRDYMRLCTR 367 Query: 297 FY--------------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 + + + + +++ + G TG IDA+ R+ Sbjct: 368 KFGPQLFRLGGFKAEGNAHSKWSRLDSPKDGFSKEQIQEIVERFLNGTTGMGFIDASQRE 427 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 + G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ A GND Sbjct: 428 IYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYVAGVGNDP 487 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKND 451 RIFNP Q +DP+ ++ W+ EL V I + D+ Sbjct: 488 RGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVDELGQIFQAWTINDEEK 537 >gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1] gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1] Length = 441 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 105/431 (24%), Positives = 173/431 (40%), Gaps = 24/431 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61 M + LVW +DLR D L+ A D +I ++ P ++ G+SA + + Sbjct: 1 MKLGLVWFGDDLRCADQNMLWRAVQEVDY-LICLYCDEPHNNHPSRYATQGMSANRRRLL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 L + L G D+ L+ + ++ L+ N +E + Sbjct: 60 NQGLQDLALQLQALGQTLFVSSM----DAATSLNLLLNEIPISHLYRNHHGGWDEQQTLN 115 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +E R I S+ P + A + LV+ P+PA Sbjct: 116 RIESRYSDVRIHLDHGLSLFTPSQLPFDIAQLPDSFSK------FRRLVENLDVFTPLPA 169 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++ P +I + + I+ + F +Y E R+ Sbjct: 170 LQKLPPAPTFDIQCIRPWQLKQIEDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELD 229 Query: 239 -IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + +++ SP+L+ G LS RQ + D + EL+WRE++ H A Sbjct: 230 GWENSTKFSPWLAQGSLSARQIKASIDVYERDHGANE--STYWIYFELLWREYF-HWYAT 286 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + P ++ + + + + W QG T +P+++A M+QLN G+M NR R I Sbjct: 287 CYGKQLFLPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMSNRGRQIV 346 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 AS L+ +L +DWR G YF QL+D + SN G WQ+ A G D R FN Q ++ Sbjct: 347 ASCLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFNLQKQTEQ 405 Query: 418 FDPQGTFIRHW 428 +DP FI W Sbjct: 406 YDPNLHFIHKW 416 >gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%) Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF V Sbjct: 2 HERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAV 61 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG+++DP G Sbjct: 62 KFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDG 121 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQ 473 ++R W+PEL +P ++IH P +L NYP+PIV+ A ++ Sbjct: 122 EYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIST 181 Query: 474 YYAA 477 + Sbjct: 182 MWQL 185 >gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 343 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 115/294 (39%), Gaps = 14/294 (4%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPR 257 M G + A L F + Y P T+ LSPYL+ G +S R Sbjct: 33 WLSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLR 92 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE--KIE 315 + + L + + + + + L W + + + K Sbjct: 93 EVYQYLLKHWQVAG--FRRSLIALSSRLHWHCHFIQKFESEYDMEFYCVNRAYEPLIKQS 150 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 D L AWK G+TG P+IDA MR L+ G+++ R+R + SFL + +DWR+G + Sbjct: 151 STFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVTH 210 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435 LD + + +Q A G RI+NP Q + DP GTFI W+PEL V Sbjct: 211 LAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPIKQAQEHDPNGTFIYKWVPELQMV 268 Query: 436 PTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 P + P + Y PI+ + +A +K++ + Sbjct: 269 PPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDNTAKAARERLWAWRKRADV 322 >gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 147 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 67/140 (47%), Positives = 89/140 (63%), Gaps = 1/140 (0%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RM+ ASFLVK+LL+DWR GE++F L+D DLASN WQW A +G Sbjct: 1 MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL 458 D+ PYFR+FNP Q K+FD G ++R ++PEL + ++ IH P +D L YP Sbjct: 61 ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEPWKIKPTLDDKPLEYPD 120 Query: 459 PIVDHKKACHHTLNQYYAAK 478 P+VD + L Y + Sbjct: 121 PLVDLGVSRERALEAYAELR 140 >gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] Length = 466 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 105/459 (22%), Positives = 182/459 (39%), Gaps = 40/459 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53 MK + L NDLRI DN+ L+ A S K+I V I P + ++ Sbjct: 1 MKK-----IGLYLFTNDLRINDNQLLHYAVQ-SVGKLICV-IVEPTLVRFSADLAQEQSY 53 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQ 111 A + F+ S+ ++ +L + G ++ D + + L Q VT F N Sbjct: 54 GAHRQTFVSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAH 113 Query: 112 YEI------NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + ++ + + + + K+ Sbjct: 114 CGYDERQLIHSLQSRHPNLITCLPHHSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNR 173 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + ++ A ++ + + + ++ + I + + H+ F + Sbjct: 174 NETVISALPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHD 233 Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y + R+ I+ +++ SP+L++G +SP+ + LK+ + + E Sbjct: 234 YAFNYKQTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQ--FEADHGSNDSTYWIYFE 291 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQL 343 L+WRE++ S G+ + + +L A WK G T +PI+DA MRQL Sbjct: 292 LLWREYFYWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVDACMRQL 351 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST----- 398 NT G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A Sbjct: 352 NTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQV 411 Query: 399 ---------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 N + P R F+ Q +DP FI W Sbjct: 412 STQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450 >gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 462 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 14/250 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296 TS LSPYL G LS R+ ++ ++ + + + +L + RE+ R+L Sbjct: 1 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 60 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 +P KP + W D + W+QG TG+P++DA MR+L GW+H+R+R++ Sbjct: 61 NHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 119 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 +SF VK L + WR G +YF LLD DL S+ GWQ+ + + DS I NP ++G Sbjct: 120 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGY 179 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC--- 467 +FDP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 180 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRL 239 Query: 468 HHTLNQYYAA 477 L++ + Sbjct: 240 QEALSEMWQL 249 >gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare] Length = 350 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%) Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + W D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF V Sbjct: 2 HERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAV 61 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K LL+ W G +YF LLD D+ S+ GWQ+ + D R+ NP +QG+++DP G Sbjct: 62 KFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDG 121 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQ 473 ++R W+PEL +P ++IH P +L NYP+PIV+ A ++ Sbjct: 122 EYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIST 181 Query: 474 YYAA 477 + Sbjct: 182 MWQL 185 >gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp. patens] Length = 148 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 78/146 (53%), Positives = 94/146 (64%), Gaps = 6/146 (4%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F QL D DLA+NNGGWQWAASTG Sbjct: 1 MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLS 453 D+ P+FRIFNP Q ++FD FI ++PEL +P HAP L Sbjct: 61 CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLG 120 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479 +YP P+VDH A TL +Y K+ Sbjct: 121 KDYPHPVVDHAAARERTLARYGVVKQ 146 >gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus] Length = 563 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 40/486 (8%) Query: 11 LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L LR+ DN ALY A + K AV+I + ++ + F+ L ++ Sbjct: 48 LHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFDG--FDSKPVAPVRWQFLIDCLEDLK 105 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L+ G+ + ++I+ L + +V L N ++N ++ + K Sbjct: 106 EQLNGFGLELYCFR----GETIDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKMCTI 161 Query: 130 RVICKSFDDSVL--------------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + D + +L K +A IQ++ Sbjct: 162 NAVQLYNDMDSHRLLYLPPKYKSAIPMSKFRVLLAEAITAKQNNLESEAKIQDITPPLNP 221 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +P + + + R Y RD Sbjct: 222 EQLSDLGNKPRLDSPLPSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREARLRD 281 Query: 236 IPAIQGTS-------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 + + S +SP+L G ++PR +N L + D + L ++ R Sbjct: 282 VSGDEDASPIAAKAMGISPHLRFGCITPRHLFNFLVKTIKDA-NYSRIKINKVLAGIMAR 340 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 +F + I W+ ++ +++ TGFP DAA+ QL T G Sbjct: 341 DFALQVSQLQTIPERIISLNKICLPIPWDKNNNEIVEKLTDAQTGFPFFDAAITQLKTEG 400 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPY 405 ++ N + A+F+ L V W G+ +F L+ DLA + W A+ + Sbjct: 401 YVINEVSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVTGRQK 460 Query: 406 FRIFNPTIQ-GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458 +P + K+ DP G +I+ +LP+ N P ++IH P + + ++YP Sbjct: 461 SYQ-DPLLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDIDYPK 519 Query: 459 PIVDHK 464 P+ +++ Sbjct: 520 PLFEYE 525 >gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2] Length = 473 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 94/433 (21%), Positives = 155/433 (35%), Gaps = 16/433 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62 MS L+WLRNDLR+ D L+AAC ++ V Q W I + ++ Sbjct: 43 MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ + ++ + + V + + Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIVCEDIAAPDEQAEVEALRAS 162 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + D + P + + + + L + P I Sbjct: 163 GLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQPYPPLPVPEALPRVPPHI 222 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDI 236 P ++D H+ + + + Y R+ Sbjct: 223 PNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQYLARGLPHSYKRTRNG 282 Query: 237 PAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +S+ S +L+ G LSPRQ + L++ + ++ EL+WR+++R L Sbjct: 283 LVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWRDYFRFLH 340 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + D AW G TG ++DAAMR+L G++ NRLR Sbjct: 341 MQHGRALYRARGLGPELATPH--DDQNFAAWCSGQTGKTLVDAAMRELAATGYLSNRLRQ 398 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + AS+L+ DL DWR G +F SQLLD D+ SN G W + A G D R F+P Q Sbjct: 399 VAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQG-GRRFDPVKQA 457 Query: 416 KRFDPQGTFIRHW 428 +D G + R W Sbjct: 458 ATYDADGAYQRLW 470 >gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens] Length = 336 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 10/246 (4%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL + + + + + S +L+WREF+ P Sbjct: 10 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRF 68 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 69 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 127 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL V W G F LLD D + N G W W + + +F + P G+R DP Sbjct: 128 TRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 186 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474 G +IR +LP+L P++YI+ P + + K + ++YP PIV+H + + + Sbjct: 187 SGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERM 246 Query: 475 YAAKKQ 480 +Q Sbjct: 247 KQIYQQ 252 >gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16] gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16] Length = 412 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 96/428 (22%), Positives = 173/428 (40%), Gaps = 33/428 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT--PEQW----RQHGISARQSHFI 61 +V L W NDLR +N L A + D +++AV+ E +H + + FI Sbjct: 4 TVGLYWFINDLRRLNNSLLDRAINEVD-ELVAVYCLPHVTEYLAAFSGEHNLGTHRERFI 62 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + S+ + +SL+ G+ + E ++ Q+ V+ L+ + +E Sbjct: 63 HQSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMIN 118 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +++++ + +S + ++ + A Sbjct: 119 VIKQKFPTLEVIQSDNTTLFHSDQLPFPLDE-----------------LPATFTQFRKQV 161 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQ 240 + + PS + + H+ F + Y E R+ Sbjct: 162 EPIFELLYPSQDALYRLGEIATPTGVVGGERAAIQHVTWYFSQPFASSYKETRNHLEGES 221 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++ SP+L++G +SP Q L++ + + + EL+WRE++ + Sbjct: 222 SSTHFSPWLALGCISPAQIVALLRQY--EQRNGANQSTYWIIFELLWREYFYWYGRKHQQ 279 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +++ D Q W +G T F I+++ M QLN G+M NR R + AS Sbjct: 280 RVFYFSGL-TSKQALKPFDDEAFQRWVKGETDFAIVNSCMNQLNETGFMSNRGRQLVASC 338 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L+ +L +DWR G YF +QL+D D+ SN G WQ+ A G D P R FN Q + +DP Sbjct: 339 LIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNP-SRRFNLAKQAELYDP 397 Query: 421 QGTFIRHW 428 +F R W Sbjct: 398 DSSFTRRW 405 >gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3] Length = 447 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 102/450 (22%), Positives = 174/450 (38%), Gaps = 36/450 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53 MK + L NDLRI DN L+ A D +++ V I P ++ Sbjct: 1 MKK-----IGLYLFTNDLRINDNTLLHRASQLVD-ELLCVAI-EPKLSTYSVRLSQEQHN 53 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 A + FI ++ + +L++ G + + +D L Q+VT F + Sbjct: 54 GAHRHLFIKQAINDLALNLARLGQRLFVLERNKSED----LVQLVKSQQVTHFFASSHCA 109 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 +E + K + I + ++ + ++ + +T FR + + + + Sbjct: 110 HDERQLIKDTLTQCPDLFISQQHHTTLF-ESDAFPFELTKLPRSFTKFRLQVERLEINTN 168 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + P P D + Y + Sbjct: 169 ESVVAYLPPAPQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTR 228 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + I+ +++ SP+L++G +SP+ + LK+ + + EL+WRE++ Sbjct: 229 NALDGIENSTKFSPWLALGCVSPKTIYRHLKQ--FEAHRGANDSTYWIYFELLWREYFYW 286 Query: 294 LMAFYPSVCMGKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + G+ E++ WK G T +PI+DA MRQLN G+M NR Sbjct: 287 KCLTLGTSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNR 346 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP-------- 404 R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A N P Sbjct: 347 GRQLVASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSV 406 Query: 405 ------YFRIFNPTIQGKRFDPQGTFIRHW 428 R F+ Q + +DP+ FI W Sbjct: 407 AHQSQFKSRHFDLVKQTEMYDPEHAFINKW 436 >gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula] Length = 517 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 96/494 (19%), Positives = 176/494 (35%), Gaps = 29/494 (5%) Query: 9 VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---SHFIYAS 64 + W R D LR+ DN A A D AVFI P + Q F+ + Sbjct: 21 TTVHWFRLDALRLHDNPAFVDAVKT-DGNFKAVFIIDPWFNANYNNGGPQVNVWRFLLEA 79 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L +K + + L + V K+ + +E + + Sbjct: 80 LHDLDSRLQKK--PYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESMKHDGII 137 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQADLRS 176 K L + ++ AL +V +++ + + Sbjct: 138 KILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHPM 197 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---- 232 + V D + + Sbjct: 198 SLCMKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAIP 257 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 + + LSPY+ G LS RQ +++L + F K + L+ REF Sbjct: 258 NEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQ-FASTSSKGQELFELLTKNLLLREFAF 316 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + P + + ++ W ++ +QA++ G TG+P IDA +RQ+ GW H Sbjct: 317 LVGSSSPKFDVME-GNSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAHFL 375 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R A FL + L + W +G+E+F ++D +L ++ W ++ +G ++P Sbjct: 376 ARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCWMQSSCSGFFCTQ-IESYDP 434 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS------LNYPLPIVDHKK 465 + GK+ D G +I+ ++PEL + P++Y+H P + + YP PI+D K Sbjct: 435 CLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCSSLHTEASWLCDREQYPKPIIDVCK 494 Query: 466 ACHHTLNQYYAAKK 479 + + K Sbjct: 495 QGELCCKRVQSIMK 508 >gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10] Length = 651 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 92/537 (17%), Positives = 171/537 (31%), Gaps = 92/537 (17%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWR----------- 49 MS + +R DLR+ DN L++ N D ++ +++ +Q Sbjct: 1 MSHSNILIYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCK 60 Query: 50 ------------QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97 ++ F+ S+ ++ L + + + ++ + Sbjct: 61 SPYPEARSQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIRVGMVDEVVKDLIEGF 120 Query: 98 CL----QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 + + E R D+ L+ I + Sbjct: 121 QKTGGSKVSAVWMTSEEGVEEKREERSTEKICDKAGVDFQLWQDEKYLIDDRDIPFKDPK 180 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---------------------- 191 + ++ L +A +LP P P Sbjct: 181 DLPDVYTTYRKSVEPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIESALL 240 Query: 192 ---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQG 241 P + ++ P + + Y R+ Sbjct: 241 KPINAQPLIKNPPSYPENSLSVHPFTGGESHAQERLEHLITSGSINAYKSSRNGLMGTDF 300 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS------------GAFSWLNELIWRE 289 +++LS YL++G ++ RQ + + + G + EL+WR+ Sbjct: 301 STKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWRD 360 Query: 290 FYRHLMAFY--------------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 + R + + + + + +++ + G TG Sbjct: 361 YMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMGF 420 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 IDA+ R+ G+ NR R ASFL K L +DWRIG E++ L+D D++SN G WQ+ Sbjct: 421 IDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYV 480 Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKND 451 A GND RIFNP Q +DP+ ++ W+ EL V I + D+ Sbjct: 481 AGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVDELGQIFQAWTINDQEK 537 >gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2] Length = 437 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 105/434 (24%), Positives = 171/434 (39%), Gaps = 25/434 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISA 55 MK + L +DLR+ DN AL +S +I +++ P+ Q+ Q SA Sbjct: 1 MKK-----IGLFIFDHDLRVLDNPAL-KVLADSVDTLICLYVHVPQDAFSQQFSQTQPSA 54 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 + F+ L+++ ++L + +Y +T + N Sbjct: 55 AKLGFLQQHLVELDENLRLLNQFLVIEH----GSVPSVVSNYIKHYGITDIGRTIHAGFN 110 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E + L+ C + S L + + K +TP RK Q V A L Sbjct: 111 EQHHWQYLQATFPAVKFC-AHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPAPLE 169 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 +L L P+ + + P ++ F + Y E R+ Sbjct: 170 ALTY----LPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRN 225 Query: 236 IPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 +++LS +L+ G LSPRQ LK + + EL+WRE++ Sbjct: 226 ALMGDDFSTKLSGFLAHGALSPRQIMAALKRY--ESTQGANESTYWIYFELLWREYFYWY 283 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + + + W +G T +P+++A MR+LN GWM NR R Sbjct: 284 ARKHQQRLFSAGGVRQ-KSLATSFYPSRFKQWCEGSTPYPLVNALMRELNETGWMSNRGR 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 I AS V +L +DWR G YF +L+D D+ SN G WQ+ A G D R F+ Q Sbjct: 343 QIVASCFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GRHFHIKKQ 401 Query: 415 GKRFDPQGTFIRHW 428 +DP F+ W Sbjct: 402 AALYDPNNAFVTFW 415 >gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23] Length = 566 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 117/274 (42%), Gaps = 38/274 (13%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 T+ LSP+L G LS R+ + R+++ + S +LI+R+ Y A + Sbjct: 228 TTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAK 287 Query: 302 CMGKPFIPWTEKIEWNKDSH---------------------LLQAWKQGYTGFPIIDAAM 340 P+ I W+ S Q WK+G TGFP IDA M Sbjct: 288 FTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWIDALM 347 Query: 341 RQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 RQL GW+H+ R A FL + VDW G E F LLD + A N G WQW + T Sbjct: 348 RQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTA 407 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---- 455 S YFR ++P G+++D G IR W+PEL N+ ++YI+ P ++ Sbjct: 408 FFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEPWKAPIQDQKKAGVRVV 466 Query: 456 -----------YPLPIVDHKKACHHTLNQYYAAK 478 YP P+ D K +N A Sbjct: 467 GDGLGDQEQGTYPKPMFDFGKRRETCINAMKIAY 500 >gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 136 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 81/138 (58%), Positives = 101/138 (73%), Gaps = 2/138 (1%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MRQL GWMHNR+RMITA FL K+LL+DWRIGE++FM L+DGDLA+NNGGWQW ASTG Sbjct: 1 MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 D+VPYFRIFNP Q K+FDP+G +IR W+ EL ++ + IH P+S K+DL LNY P Sbjct: 61 TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118 Query: 460 IVDHKKACHHTLNQYYAA 477 IVD K+ + + Sbjct: 119 IVDLKETRLKAIETFKNI 136 >gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559] Length = 421 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 103/425 (24%), Positives = 185/425 (43%), Gaps = 26/425 (6%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASLLQVQKSLSQK 75 DN L A N++ VIAV+ P + ++ F+ ++ ++++L +K Sbjct: 2 NDNAVLNHAVANNN-PVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ--HRVIC 133 I + + + ++ ++Y +++ E + L+++ ++ + Sbjct: 61 NITLVV----SLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLH 116 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 +D + P + ++ K+YT FRKA + V L +L + + I Sbjct: 117 SYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYAI 176 Query: 194 PRFFDYP------FQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQ 244 P+ D+ + GE + + Y E R+ + + +S+ Sbjct: 177 PKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSSK 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S +L+ G +S RQ + +K+ + +K + + ELIWR+++ ++ Y + Sbjct: 237 YSAWLANGSISARQIYWDIKDY--EKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIFK 294 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 I + WNK L+ W G T + ++A M +L GWM NR R AS+ K+ Sbjct: 295 LNGILSKDYN-WNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAKE 353 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 L DWRIG YF S L+D D+ SN G W + A GND P R FN +Q KR+DP + Sbjct: 354 LQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNREY 411 Query: 425 IRHWL 429 + WL Sbjct: 412 RKLWL 416 >gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group] gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group] Length = 334 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 9/173 (5%) Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 E D ++W+QG TG+P++DA MR+L GW HNR+R+I +SF VK LL+ W G Sbjct: 20 FENIHDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGM 79 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 +YF LLD DL S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+PEL Sbjct: 80 KYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELA 139 Query: 434 NVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTLNQYYAA 477 +PT++IH P +L NYP PIVD A +++ + Sbjct: 140 RMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQL 192 >gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b] Length = 404 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 118/433 (27%), Positives = 178/433 (41%), Gaps = 39/433 (9%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISAR-----QS 58 M ++W +NDLR+ D+ L A H+ D + F +P Q+ ++ + Sbjct: 1 MKT-IIWYQNDLRVDDHLPLEEALHHDD----PIEGHFFISPNQFIENRYGVIPLGNERL 55 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL V SL GI F H +E LD + + Sbjct: 56 RFLKESLEDVSGSLDALGIPFYVH----VGHPLETLD---------------PSDRLLFQ 96 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 R +R + + K + + G L PF + V+ D+R Sbjct: 97 RAVGYNERRRENEVMKRWKGTYKTFEGFTLFEKEDNPFEKMPFLFTEFRKAVEYDVRPRE 156 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDI 236 + + + T P Q FP GE A L + + Y E R+ Sbjct: 157 LISRKATAATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNG 216 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + +++LS YL+ G LSPR+ + L+ + + EL+WREF++ + Sbjct: 217 FGVDDSTKLSAYLANGSLSPRRVFFELEAH--ERTHGVNESTYWLYFELLWREFFQWVAL 274 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 I K +W D +++ W++G TG +DA MR+LN GWM NR R I Sbjct: 275 DQGKKLFRSQGIRSKRK-DWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGRQI 333 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 A++ K+L DWR G YF S+L+D D+ASN G W + A GNDS R FN Q Sbjct: 334 VANYFAKELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSR--DRRFNIERQQF 391 Query: 417 RFDPQGTFIRHWL 429 +DP F WL Sbjct: 392 TYDPDRAFRNKWL 404 >gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays] gi|194694998|gb|ACF81583.1| unknown [Zea mays] Length = 428 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R+L +PS +P + W D + W+ Sbjct: 8 NEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWR 66 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ ASF VK L + WR G +YF LLD DL S Sbjct: 67 QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 126 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ + D RI NP +G +FDP G ++R W+PEL +PT++IH P Sbjct: 127 DALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAP 186 Query: 448 ------DKNDLSLNYPLPIVDHKKAC---HHTLNQYYAA 477 +L NYPLPIV+ A L++ + Sbjct: 187 VSVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQL 225 >gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966] Length = 400 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 165/375 (44%), Gaps = 79/375 (21%) Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + P P A + + G + A HIL +F K KV Y E RDIP GTSQL Sbjct: 8 AQCLDWSSPESEHNPTWASEFPWIPGSETAHHILTEFLKTKVSRYSESRDIPFESGTSQL 67 Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 SPYL+ G +SP + + L+E D + ++ ELIWREF HL+ P + Sbjct: 68 SPYLAHGEISPHRVLHALREVRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLAT 127 Query: 304 GKPFIPWTEKIEWNKDSHL--------------------------LQAWKQGYTGFPIID 337 W + W+ G+TGFPI+D Sbjct: 128 QNHNEQWNLFTWSQMATESQLTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVD 187 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MRQL IGWMHNR+RMITAS L+K+L + WR+GEE+F + L+D D ASN G WQW A Sbjct: 188 AGMRQLWKIGWMHNRVRMITASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAG 247 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN------------------------ 433 TG D+ P+FRIFNP Q RFD + ++R W+PEL Sbjct: 248 TGADAAPFFRIFNPARQADRFDQKCAYVRTWVPELKTKTTQEVAAMYEASPRKAAKEQDE 307 Query: 434 --------NVPTQYIH---------------APHSWLDKNDL----SLNYPLPIVDHKKA 466 ++ +Q+IH P S NY IVD KK+ Sbjct: 308 DFLALTNPSLTSQWIHSSPNSGSTSNSVKYATPFSHAFSQRYVAVPETNYHNLIVDFKKS 367 Query: 467 CHHTLNQYYAAKKQS 481 L+ Y +K S Sbjct: 368 RDLALSCYQTIRKNS 382 >gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1] Length = 431 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 94/433 (21%), Positives = 158/433 (36%), Gaps = 16/433 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62 MS L+WLRNDLR+ D L+AAC ++ V Q W I + ++ Sbjct: 1 MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR---- 118 ++ + +S + + V + + Sbjct: 61 NTIQNLAQSFHELRSQLLILDAPAAVALPALAQALGAGIIVCEDIAAPDEQAEVQALRAA 120 Query: 119 --RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + + L + A++ K+ +++ L + Sbjct: 121 GLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKLQPYPPLPVLEALPRVPPNI 180 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + AI + H+ + + + Y R+ Sbjct: 181 PSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHLRQYLARGLPHSYKRTRNG 240 Query: 237 PAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +S+ S +L+ G LSPRQ + L++ + ++ EL+WR+++R L Sbjct: 241 LVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWRDYFRFLH 298 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + D AW G TG ++DAAMR+L G++ NRLR Sbjct: 299 MQHGRALYRARGLGPELATPH--DDQNFAAWCSGQTGQTLVDAAMRELAATGYLGNRLRQ 356 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + AS+L+ DL DWR G +F SQLLD D+ SN G W + A G D R F+P Q Sbjct: 357 VAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQG-GRRFDPVKQA 415 Query: 416 KRFDPQGTFIRHW 428 +D G + R W Sbjct: 416 ATYDADGAYQRLW 428 >gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4] Length = 454 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 91/440 (20%), Positives = 155/440 (35%), Gaps = 27/440 (6%) Query: 11 LVWLRNDLRITDN---KALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIY 62 + W R DLR+ D A ++ VF+ P +W +S + ++ Sbjct: 16 IFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFARMSPHRRAWLA 75 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY------CLQQRVTKLFYNRQYEINE 116 +++ + L G + D + + + C + + + Sbjct: 76 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCDEIAAPEEQAVVAALLAA 135 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + + FD + + HAL+ V I+ L + Sbjct: 136 GVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQAARPLPSIKQLPPLPSHA 195 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---- 232 L + +P+ A + Y Sbjct: 196 LLNAIPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHS 255 Query: 233 ---QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 R+ + +S+ SP+L+ G LS RQ W ++ + ++ EL+WR Sbjct: 256 YKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQAFEAEHGANE--SSYWLWFELLWR 313 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 + +R + E + D W +G TG P IDA MR+L G+ Sbjct: 314 DHFR--WLHFKHGKRLYRARGLGEAHVPSHDPDHFARWCRGETGQPFIDAGMRELAATGY 371 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 + NR+R AS+L+ DL DWR G +F SQLLD D+ SN G W + + G D R Sbjct: 372 LSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPRQ-GRR 430 Query: 409 FNPTIQGKRFDPQGTFIRHW 428 FNP Q + +D G++ W Sbjct: 431 FNPDKQAQDYDADGSYRALW 450 >gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 420 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 86/429 (20%), Positives = 158/429 (36%), Gaps = 43/429 (10%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL--------- 99 R+ F ++ ++ +L ++G + E L + Sbjct: 1 NSLKCGPRRVQFALEAVADLRSNLEKRGSGLVV----AVGNPEEILATIATSAVESSGDN 56 Query: 100 ----QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 + + + +++ R L + + L ++ Sbjct: 57 GALINVVCQEEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVF 116 Query: 156 KVYTPFRKAL--IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 + F ++ + + L+ P Y + I+ + + + Sbjct: 117 GIPDTFTPFRNKVEKICEIGAPLDCPKDEYLSLPKNYMPTLFDLGYNAEDIESVSSVDSR 176 Query: 214 N--------------ALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258 + K + Y + R+ + +++ +P+L++G +SPR Sbjct: 177 TALPVNYRGGETFALQRVKDYIWDKNLLKVYFDTRNGMIGSDYSTKFAPWLALGNVSPRY 236 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF----IPWTEKI 314 + + + EL+ R+ ++ + +E+ Sbjct: 237 IARECSRY--EEQRVQNKSTYWVVFELLIRDHFKFFAKKHGDKVFYLTGTIGKQRGSERK 294 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 +W D +QAW+ G TGFP++DA MR+L G+M NR R ASFL D+ +DWR G E Sbjct: 295 KWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDMNMDWRYGGE 354 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 YF LLD D+ SN G W ++ G R FN Q K +D G ++R W PEL N Sbjct: 355 YFEETLLDYDVHSNWGNW--CSAAGMTGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKN 411 Query: 435 VPTQYIHAP 443 VP +Y+H+P Sbjct: 412 VPDKYVHSP 420 >gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC 43768] Length = 430 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 107/448 (23%), Positives = 167/448 (37%), Gaps = 40/448 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA +I ++I + R++ F S ++ + Sbjct: 16 LVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI L ++ + + + + + D L L Sbjct: 70 GLAGRGIPLYTEVSPAG------LVRLAVRLNIRAVIADESHTFADKLTDNALWHELDKH 123 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + P Sbjct: 124 GIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQPPAGSDIFSTYRQPFPE 183 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + +I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 184 NLPAPQPAALSDSIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRKNTSLMGAYLS 242 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 243 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDGPSDGNPEH 292 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 293 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 343 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F QL D D A N G W+ AAS + + DP GTF+R +P Sbjct: 344 EGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAAAAHKTDPDGTFVRRHIP 396 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 EL ++P IH P D + YP Sbjct: 397 ELAHLPAAVIHTPWRAAGSID-THGYPA 423 >gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 420 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 10/219 (4%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + G +L + RE+ R+L +P KP + W + + W+ Sbjct: 8 NESNRDGEEGCSLFLRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWR 66 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 67 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 126 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++IH P Sbjct: 127 DALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAP 186 Query: 448 DKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477 + +L NYPLPIV+ +A L++ + Sbjct: 187 ESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 225 >gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299] gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299] Length = 869 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 113/511 (22%), Positives = 186/511 (36%), Gaps = 54/511 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQ-----HGISARQSHFI 61 +VW R DLR+ DN+A AA + +V+ +F+ +P++ ++ Sbjct: 87 AVVWFRQDLRLDDNQAFRAAVRAANRRGGEVLCLFVWSPDEEGNDEGASWAPGEASRVWL 146 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + SL + + + + + + T +F + +YE V D Sbjct: 147 HHSLDALDRD--IRRRYGGGGIRFAAGEHASAVAAAAADVNATAVFASARYEPAHVEGDA 204 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--- 178 + L I LL + ++ + + + + Sbjct: 205 RTRRALAEGGIELITLPGHLLFDRDKIRIDMERERYFFGTLMPFVHAAEKFGGEPGAPSP 264 Query: 179 -----------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 V + G + PS+ R + +A M G A ++ Sbjct: 265 APPTAPIAHDGSGGAGGVSTLASLGLIPPSDAARDWSAGLRAEWDMSESGASEAWAQFKR 324 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-- 279 + D+ TS LSPYL G LSPR+ ++ L++ + G Sbjct: 325 MGLAGYEATHGRCDLTHKSSTSLLSPYLRFGQLSPRRVYSELRDARFGTAVDGVEGRRLS 384 Query: 280 -SWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 ++ + L REF + A + W + L+ W++G TG Sbjct: 385 RTFWHRLYRREFAYWQLGVFPQLAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKGETG 444 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 FP++DA MR+L GWMH RM+ A+FLV L + W G +F L+D DLA N+ W Sbjct: 445 FPVVDAGMRRLIRTGWMHQTERMLAATFLVDYLHIHWSHGARWFHDYLVDADLAINSMMW 504 Query: 393 QWAASTGNDSVPYFRIF----NPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWL 447 Q A +G D +F P + DP G I ++PEL +P ++ H P Sbjct: 505 QNAGKSGLDQWD---VFAGGLAPDGSARTHDPNGETIAQYVPELAGLPPGHLRHRPWEAS 561 Query: 448 DK------NDLSLNYPLPIV-DHKKACHHTL 471 K + YP IV D A L Sbjct: 562 AKTLANAGVTIGDTYPARIVPDVDAARARML 592 >gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens] Length = 384 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 113/389 (29%), Positives = 177/389 (45%), Gaps = 15/389 (3%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++ + LVWLR DLR+ DN AL+ A ++I V+I + + ++Y Sbjct: 2 SSKIPCTLVWLRRDLRLIDNPALFHAAKR--GQLITVYIFDEDCSGRRKTGQACLWWLYH 59 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 SL + LSQ I + D+ L +++NR YE E RD + Sbjct: 60 SLKSLHNQLSQWNIPLIMKSGN---DAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSI 116 Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADLRS 176 E++L V +++ D VL P +I ++Y F + + ++ Sbjct: 117 EEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLPQPRKPYDKPKFKN 176 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 + P + + + + GE+ A+ L+ F K + Y E+ Sbjct: 177 QTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQC 236 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHL 294 + TS LSPYL G +SP W+ ++ +L L WRE+ HL Sbjct: 237 LRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHL 296 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + YP + K F E+++ D LQ+W+QG TG+P++DA MRQL+ G M NRLR Sbjct: 297 LFHYPDLPQ-KCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLR 355 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDG 383 MI ASFL+K LLV W+ GEE+F S+L+D Sbjct: 356 MIVASFLIKHLLVPWQKGEEWFWSKLIDA 384 >gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis] Length = 278 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 1 MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 60 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W + + +F + P G+R DP G Sbjct: 61 DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 119 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR +LP L P +YI+ P + + K + +NYP P+V+H +A + + Sbjct: 120 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQI 179 Query: 478 KKQ 480 +Q Sbjct: 180 YQQ 182 >gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1] Length = 458 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 108/445 (24%), Positives = 179/445 (40%), Gaps = 39/445 (8%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------------- 52 MS+ ++W +DLRI DN LY A D ++I ++ ++P+ Sbjct: 1 MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59 Query: 53 -----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 S ++ F + L + SL + + ++ ++ + +T ++ Sbjct: 60 NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWV----SSKNASATIEFLVSKYPITHIY 115 Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 + INE L+ R + ++ + + Sbjct: 116 RHHHAGINEATTLTKLQARYTDIRWITEYGLTLFSRHALPFSLNELPESFTK------FR 169 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFC 223 LV+ + A+ P N P P + P H+ F Sbjct: 170 KLVETIDVPKTIKAVDRLPPPVAINSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFS 229 Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 Y E R+ + +++ SP+L+ G +SPRQ N L F + + + Sbjct: 230 SGAASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSL--AFYESRMGSNDSTYWIY 287 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WRE+++ Y + K I + + + + + W G T FPI++AAM+Q Sbjct: 288 FELLWREYFQWYSMKYGARLFSKSGI-HNKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQ 346 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 LNT G++ NR R + AS L+ DL +DWR G YF SQL+D D+ASN G WQ+ A G D Sbjct: 347 LNTTGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADP 406 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRH 427 R FN Q + +DP FI Sbjct: 407 RG-GRHFNLDKQTQLYDPDKAFINK 430 >gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis] gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis] Length = 303 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 10/247 (4%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 T+ LSPYL G LS R +++ + + K S + +L+WREFY + A P Sbjct: 26 PSTTVLSPYLKFGCLSAR-IFHQQLKAILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEP 84 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + +I W + + L+AW G TG+P IDA MRQL GW+H+ R A Sbjct: 85 NFDRM-LGNVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143 Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418 FL + DL + W G+ F LLD D A N G W W +++ YFR+++P GK+ Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKT 202 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472 DPQG +IR ++PEL P I+ P L ++YP IV H+ + Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262 Query: 473 QYYAAKK 479 + AA K Sbjct: 263 RMSAAYK 269 >gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum] Length = 375 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 17/375 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA D V VFI P++ Q ++ SL + + Sbjct: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + D ++ L + TK+ +N Y+ + RD ++++L Sbjct: 65 SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I KS++ +L P + + + + PF + + ++ P I G V Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181 Query: 190 PSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +I + + G NA L +F +++ Y + R TS Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LSPYL G LS R+ + + + + K +L + RE+ R+L +P Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + WN D + W+QG TG+P++DA MR+L GWMHNR+R+I +S Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360 Query: 360 FLVKDLLVDWRIGEE 374 F VK LL+ W+ G + Sbjct: 361 FAVKMLLLPWKWGMK 375 >gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14] Length = 616 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 83/542 (15%), Positives = 153/542 (28%), Gaps = 84/542 (15%) Query: 11 LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L+W R DLR+ DN AL+AA +SD + V+I + A + F+ L + Sbjct: 75 LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYIL--HRPENKKCGAVRFQFLLECLEDI 132 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL QK ++I +L ++T L + + ++RD+ + Q Sbjct: 133 DTSLRQKQSRLLVF----CGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQ 188 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I + L + I + + L P+ + Sbjct: 189 TLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLTPSQLPSFES 248 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 S + + + + L I K + D+ SQ S Sbjct: 249 VISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGYLTPSQHSFL 308 Query: 249 LSIGVLSPR--QCWNRLKEEFVDLLIKPKSGAFSWL-----------------NELIWRE 289 ++ + + ++E S L +R Sbjct: 309 YGGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRI 368 Query: 290 FYRHLMA----------------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + L + W+ Sbjct: 369 MFIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQNPLCRKIGWRLQNEDS 428 Query: 334 PIIDAA----------MRQLNTIG-------WMHNRLRMITASFLVKDLLVD-------- 368 + Q W+ +R I L Sbjct: 429 DPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLTR 488 Query: 369 ------WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ- 421 W G + F L+D D A N G W W +++ + +F+P+ +++ + Sbjct: 489 GDLYISWIHGAKLFQELLIDMDWAINVGNWLWVSAS-CFFHDFQNVFSPSTFPQQYYNEQ 547 Query: 422 --GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473 +I+H++PEL N+P +Y+ P + +YP PI+DH A + Sbjct: 548 EAAIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVASKKCILA 607 Query: 474 YY 475 Sbjct: 608 LK 609 >gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15] Length = 770 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 99/536 (18%), Positives = 166/536 (30%), Gaps = 107/536 (19%) Query: 11 LVWLRNDLRITDNKALY-AACHNSDA--KVIAVFIATPEQW------------------- 48 + R DLR++DN L+ A ++ V+I Sbjct: 8 IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67 Query: 49 ----RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104 ++ FI ++ V+ SL S D LD + Sbjct: 68 SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 ++ + + E++ + + + K D+ + + Q Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----------------------------- 193 + ++ L + +SLP P P + Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247 Query: 194 --PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA-IQGTSQLSPYL 249 P F GE L+ + + R+ +++LS YL Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307 Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + G ++ RQ L EE S EL+WR++ R Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----------WKQ--------------------- 328 + + ++ + WK Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427 Query: 329 -----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 G TG +IDA+MR+L G+ NR R A+FL K L +DWR G E++ L+D Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 D+ SN WQ+ A GND RIFNP Q +D +G +++ W+PEL + Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNKL 543 >gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15] Length = 793 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 99/536 (18%), Positives = 166/536 (30%), Gaps = 107/536 (19%) Query: 11 LVWLRNDLRITDNKALY-AACHNSDA--KVIAVFIATPEQW------------------- 48 + R DLR++DN L+ A ++ V+I Sbjct: 8 IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67 Query: 49 ----RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104 ++ FI ++ V+ SL S D LD + Sbjct: 68 SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127 Query: 105 KLFYNRQYEINEVRRDKLLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 ++ + + E++ + + + K D+ + + Q Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----------------------------- 193 + ++ L + +SLP P P + Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247 Query: 194 --PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPA-IQGTSQLSPYL 249 P F GE L+ + + R+ +++LS YL Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307 Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + G ++ RQ L EE S EL+WR++ R Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----------WKQ--------------------- 328 + + ++ + WK Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427 Query: 329 -----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 G TG +IDA+MR+L G+ NR R A+FL K L +DWR G E++ L+D Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 D+ SN WQ+ A GND RIFNP Q +D +G +++ W+PEL + Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNKL 543 >gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 408 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 137/364 (37%), Gaps = 25/364 (6%) Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + + S +P + + + + + + P+ P++I Sbjct: 35 RRWCRSSNIPIRELDQTGVTRCLKDRDDFSVNFKKFINQPM-WSTPSQHQCRSPMKPTDI 93 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ--LSPYLSI 251 + + GE A +L F + Y P TS LSPYL+ Sbjct: 94 QQIPEEHKGDRVERQYGGETKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTW 153 Query: 252 GVLSPRQCWNRLKEEFVDLLIK-------------PKSGAFSWLNELIWREFYRHLMAFY 298 G +S R + + +L S+ + + WR + + Sbjct: 154 GHISLRYVIVTTQRKQEELREHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQ 213 Query: 299 PSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 PS+ + + + + ++W +G TG+P +DA MR L GW++ R R + Sbjct: 214 PSLEVQDQCLAFSHLRRQPGDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAM 273 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 SF +L +DW+ Y LD + + Q +G + R++N T QGK Sbjct: 274 LVSFATYNLWLDWKRIASYLARLFLDYEPGIHYP--QLQMQSGVTGINAMRVYNVTKQGK 331 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476 DP G FIR +PEL NVP +YIH P YP PIVD K A ++ Sbjct: 332 DQDPNGVFIRKHVPELRNVPVEYIHEPFGMPCVY-----YPAPIVDEKAAAKAAKDKLSG 386 Query: 477 AKKQ 480 +KQ Sbjct: 387 VRKQ 390 >gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M6190] gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis ES14902] Length = 433 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI18] gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA6140] gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID24-1] gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae NCCP11945] gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291] gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1] Length = 432 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI L ++ + + + + + D L L Sbjct: 73 GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G +SPR E ++ W + +I R+F+ L + Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W+ AAS R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +PEL ++ +H P + D + YP V Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429 >gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica] Length = 251 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 15/249 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + GT+++S +L G +S R+ + R E F + + +L++R+FY + Sbjct: 1 MHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGERHD--------LIRQLVFRDFYLKIY 52 Query: 296 AFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + P + G + +I W+ D L AW +G TGFP++DAA RQL IGW HNR+R Sbjct: 53 SHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMR 112 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTI 413 M+T L K ++DWR G ++F L+D D+ +N GW W +STG D+VPYFR FNP I Sbjct: 113 MLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWI 172 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACH 468 Q K+FD +G +I+ ++PEL +V +H + N YP P+V H +A Sbjct: 173 QSKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASK 232 Query: 469 HTLNQYYAA 477 + + Y A Sbjct: 233 NAVYLYKKA 241 >gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240013] Length = 433 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHAD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491] gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis WUE 2594] Length = 433 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA 1090] gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02] gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19] gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332] gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679] gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035] gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62] gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae TCDC-NG08107] Length = 432 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI L ++ + + + + + D L L Sbjct: 73 GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G +SPR E ++ W + +I R+F+ L + Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W+ AAS R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +PEL ++ +H P + D + YP V Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429 >gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685] Length = 430 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 112/448 (25%), Positives = 163/448 (36%), Gaps = 40/448 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + +I ++I E H ++ F S ++ + Sbjct: 16 LVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH-----RTAFYRQSAAELAQ 69 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ GI S+ L + V + + E D L L Sbjct: 70 VLAGHGIPLYTAASSSG------LIRLAVGSSVRTVIADASCTFAEKLTDNALWHELDKH 123 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + P Sbjct: 124 SIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDRFSKHPPADSDIFATYRQPFPE 183 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I P+ G A + F K+ +Y V + D P+ + TS +S YL+ Sbjct: 184 NLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQADFYDVLK-DFPSRKHTSLMSAYLN 242 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LSPR SW + LI R+F+ L + Sbjct: 243 AGCLSPRLL----------AREGIGYRLDSWTDNLIRRDFFLQLALQHADDASSDVNPEN 292 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T + W+QG TG PIIDA+MR L G +H LR + A FL L V Sbjct: 293 TRYLAL---------WQQGQTGIPIIDASMRCLYKTGGLHPVLRRLCADFLCHTLRVPRH 343 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F QL D D A N G W+ A+S + + DP GTF+R +P Sbjct: 344 EGEAWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAAAAHKTDPDGTFVRRHIP 396 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 EL ++P IH P D + YP Sbjct: 397 ELAHLPAAVIHTPWRAAGSID-THGYPA 423 >gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri] Length = 520 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 92/486 (18%), Positives = 173/486 (35%), Gaps = 31/486 (6%) Query: 7 MSVH-LVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 M+ + L +D LRI DN +L + N+ + VF + + I + F+ S Sbjct: 1 MTYNTLHIFTDDALRINDNNSLLSNLENTK-NLYTVFYY-GHIKKINHIPPHRVIFLLES 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ L + GI + F + L + + ++ I R L Sbjct: 59 LKNLKERLDEYGIPLYFIDEPMF----QSLRMLISKWNINRVTTEPVVSIVGKRDQLSLR 114 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPV 179 L + +S L + + + + + L + L + + Sbjct: 115 NFLSAFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELTEFLSKFSSF 174 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 P + + + + +ID F GE A+ L K + + + + Sbjct: 175 PDPFINKKIPSLSEFGITNETMSSIDTKFRGGETAAILQLEKLIANRCEPNNLPK-VAQL 233 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +SP + G +S R +NR+ + R ++ Sbjct: 234 NQYDAISPAIKFGCISVRTIYNRVSKLEPKYNEVKNQIYD------GLRNRDYCILVGGN 287 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + +T + W+ ++ G TG+P IDAA+ QL G++HN ++ I Sbjct: 288 CPNIDNQGSIYTYILPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVR 347 Query: 360 FLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNPTIQGK 416 L D + + W G F LD + A W + + + + +I NP + K Sbjct: 348 TLTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQI-NPIEEAK 406 Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP-IVDHKKACHH 469 D G +IR +LPEL + P++YIH P + + +YP P D ++ Sbjct: 407 EIDKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQ 466 Query: 470 TLNQYY 475 + Sbjct: 467 CRKRLQ 472 >gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366] Length = 430 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 94/432 (21%), Positives = 164/432 (37%), Gaps = 25/432 (5%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR---- 56 MK LVW RNDLR+ DN+ L A SD+ ++ V+ P + Sbjct: 1 MKNKKI----LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGI 55 Query: 57 -QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++ F+ S+L ++K+ + G Q + + Q + +++++R+ Sbjct: 56 VRASFLLESILSLRKAFQRFGGDILLVQ----GKPEDMIRDLVEQFDIAEVYHHREVGPE 111 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 E +E L I L L ++ K + Sbjct: 112 ETEISGHVEDLLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKAC 171 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYY 230 L I +P D F+ I+ GE + L L + + Y Sbjct: 172 FLTPEHIDFVENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIY 231 Query: 231 VEQRDIPAIQGTSQ---LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 ++Q + LS +L+IG LSPR + ++KE + + + L+W Sbjct: 232 LKQNTKHTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEA--EGVFGLNANFSQIFLGLLW 289 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+++R + + + + + + L+ WK G T P++D M LN G Sbjct: 290 RDYFRFMFKKHGIAFLQETDLEKDIMQAIERVDPALEKWKTGCTAHPVVDKYMYDLNATG 349 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407 ++ + R++ A++LV L + W G YF +L+D ASN G W A G D+ Sbjct: 350 FIPHSGRLLVATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDARSKN- 408 Query: 408 IFNPTIQGKRFD 419 F+ Q K D Sbjct: 409 TFDLNKQIKILD 420 >gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11] Length = 432 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 171/453 (37%), Gaps = 44/453 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + VI + I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI L ++ + + + + + D L L Sbjct: 73 GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G +SPR E ++ W + +I R+F+ L + Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W+ AAS R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +PEL ++ +H P + D + YP V Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429 >gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18] gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2] Length = 432 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 172/453 (37%), Gaps = 44/453 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI L ++ + + + + + D L L Sbjct: 73 GLARRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQAASYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G +SPR E ++ W + +I R+F+ L + Sbjct: 246 VGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W+ AAS R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 +PEL ++ +H P + D + YP V Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPARPV 429 >gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240149] Length = 433 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI S L ++ + + + + + D L L Sbjct: 73 GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P P Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPNLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDSPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W W A++ R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 +PEL ++ +H P + D + YP Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18] gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442] gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis N1568] gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis G2136] Length = 433 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P R Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)] Length = 415 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 94/148 (63%), Gaps = 5/148 (3%) Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 TG+P++DAAMRQL GWMHNR R++ ASFL K L VDWRIG +F+ L+DGD+ +N Sbjct: 270 TGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQL 329 Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450 WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PEL +V +H P Sbjct: 330 NWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAE 388 Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478 L+YP P+V+ L ++ A+ Sbjct: 389 RGELDYPDPLVELADG----LARFKHAR 412 >gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC 13091] Length = 433 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14] Length = 433 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI S L ++ + + + + + D L L Sbjct: 73 GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P P Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L Y Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQYADDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W+ AAS R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 +PEL ++ +H P + D + YP Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis] gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis] Length = 463 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 152/427 (35%), Gaps = 27/427 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S + WLR LRI DN AL A N V+I + I F+ +L Sbjct: 21 SHSIHWLRKGLRIHDNPALRDAVLN-WGTFRVVYILDTKSVASSNIGLNLWRFLLQALED 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL + + + + +T+L + E RD + Sbjct: 80 LDDSLRKLNSRLFVIR----GQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135 Query: 128 QHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + S I++ + ++I+ + D + Sbjct: 136 REAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQKL 195 Query: 187 PVTPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQR- 234 TP + Y ++ ++ GE AL L + + K + + Sbjct: 196 GHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKP 255 Query: 235 ---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + S +SPYL G LSPR + RL + + + S +L+WREF+ Sbjct: 256 KVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG--GPPPTSLYGQLLWREFF 313 Query: 292 RHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + P+ P + + + + LQ W TGFP IDA M QL GW+ Sbjct: 314 FVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWI 373 Query: 350 HNRLRMITASFLVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 H R+ ASFL + + W G + F LLD D +SN G W W + + S +F Sbjct: 374 HYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYS-AFSQQFFNP 432 Query: 409 FNPTIQG 415 P Sbjct: 433 PCPVEFS 439 >gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus] Length = 266 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 2 MEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 61 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 62 DLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGD 120 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +++ +LP+L P++YI+ P + + K + ++YP P+V+H + + + Sbjct: 121 YVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQI 180 Query: 478 KKQ 480 +Q Sbjct: 181 YQQ 183 >gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 433 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 166/448 (37%), Gaps = 40/448 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA + +I + + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-SPIIGI-----RIDDAETGNPRRTAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI L ++ + + + + + D L L Sbjct: 73 VLAGRGIPLYTAASPAG------LVRLAVRLNIRTVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDIFSTYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLPAPPPAAFSDGIFLPQNGGETAAWRQWRRFIEQADSYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 246 AGCISPRLLARESLERRLNA----------WTDNIIRRDFFLQLALQHADDAPADGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDA+MR L+ G +H L+ ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDASMRCLHKTGSLHPALKRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F QL D D A N G W+ A+S + + DP GTF+R +P Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAAAAHKTDPDGTFVRRHIP 399 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 EL ++P IH P D + YP Sbjct: 400 ELAHLPAAVIHTPWRAAGSID-THGYPA 426 >gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis OX99.30304] Length = 433 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 44/450 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI S L ++ + + + + + D L L Sbjct: 73 GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P + P Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFVAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W W A++ R P + DP GTF+R Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKTDPDGTFVRRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 +PEL ++ +H P + D + YP Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis 961-5945] Length = 433 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI F L ++ + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPFYTAASPAG------LVRLAVRLNTRAVIADESHTFADKLTD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPQPAVLSDGIFLPRNGGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR + E ++ W + +I R+F+ L + Sbjct: 236 NTSLMGAYLSAGCISPRLLARKSLERRLNA----------WTDNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970] Length = 429 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 112/468 (23%), Positives = 176/468 (37%), Gaps = 49/468 (10%) Query: 1 MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55 M + TA +V LVW R +LRI DN AL AA + +I ++I + Sbjct: 1 MPSETAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDD-----AETGNP 54 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 R++ F S ++ + L+ +GI L ++ + + + + Sbjct: 55 RRTAFYRQSAAELAQVLAGRGIPLYTAASPAG------LVRLAVRLNIRTVIADASHTFA 108 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 + D L L I +F + + + L + + + Sbjct: 109 DKLADNALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPP 168 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + P + I GE A R+F ++ Y V + D Sbjct: 169 ADSDLFAAYRQPFPENLPAPQPAAFSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-D 227 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 P+ + TS + YLS G +SPR E ++ W + +I R+F+ L Sbjct: 228 FPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLA 277 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + T ++ W+QG TG PIIDAAMR L+ G +H L+ Sbjct: 278 LQHADDAPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALKR 328 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TI 413 ++A F L + R GE +F QL D D A N G W+ AAS R P Sbjct: 329 LSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAA 379 Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 R DP GTFI+ +PEL ++ +H P + D + YP V Sbjct: 380 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPARPV 426 >gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria meningitidis H44/76] gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis CU385] gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis H44/76] Length = 433 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M04-240196] Length = 433 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 468 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 94/446 (21%), Positives = 164/446 (36%), Gaps = 33/446 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ------WRQHGISARQSHFIYAS 64 + W R+D+R+ DN A AC V+AV P W G+S + + A+ Sbjct: 24 IYWFRSDMRLQDNPAWTRACAMG-RPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAAT 81 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD----------SYCLQQRVTKLFYNRQYEI 114 + ++++ L G+ + + + + + +L R I Sbjct: 82 VQELRRELDALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERAQLSSLRASGI 141 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 + + + + V + + A ++ P + + D Sbjct: 142 VVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDA 201 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCK 224 S + PR +D + ++ Sbjct: 202 VSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLES 261 Query: 225 EKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 +V Y R+ + +S+ SP+L++G +S + LK + G++ Sbjct: 262 GRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGTTD--GSYWLWF 319 Query: 284 ELIWREFYRHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 EL+WR+++R L + + K + + W QG TG ++DA MR+ Sbjct: 320 ELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMRE 379 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L G++ NR+R + ASFL+ +L DWR G +F SQLLD D+ SN G W + A G D Sbjct: 380 LACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDP 439 Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428 R FN Q DP G + W Sbjct: 440 RG-GRRFNVAKQTADHDPDGAYRALW 464 >gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153] Length = 433 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 170/450 (37%), Gaps = 44/450 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA VI ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDD-----AETDNPRRAAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI S L ++ + + + + + D L L Sbjct: 73 GLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P P Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRKHTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTDDDPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQGTFIRHW 428 GE +F QL D D A N G W W A++ R P R DP GTFI+ Sbjct: 347 EGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRTDPDGTFIKRH 397 Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 +PEL ++ +H P + D + YP Sbjct: 398 IPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640] gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06] Length = 433 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 106/448 (23%), Positives = 166/448 (37%), Gaps = 40/448 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LRI DN AL AA +I ++I + R++ F S ++ + Sbjct: 19 LVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETGNPRRTAFYRQSAAELAQ 72 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +GI L ++ + + + + + D L L Sbjct: 73 VLAGRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLADNALWHELDKH 126 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I +F + + + L + + + + P Sbjct: 127 GIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDLFAAYRQPFPE 186 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + I GE A R+F ++ Y V + D P+ + TS + YLS Sbjct: 187 NLSTPPPAAFSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRKNTSLMGAYLS 245 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR E ++ W + +I R+F+ L + Sbjct: 246 AGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHADDGPSDGNPEH 295 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 T ++ W+QG TG PIIDAAMR L+ G +H L ++A F L + R Sbjct: 296 TLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALIRLSADFFCHVLNLPRR 346 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE +F QL D D A N G W+ AAS + + DP GTF+R +P Sbjct: 347 EGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAAAAHKTDPDGTFVRRHIP 399 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 EL ++P IH P D + YP Sbjct: 400 ELAHLPAAVIHTPWRAAGSID-THGYPA 426 >gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M13399] Length = 433 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans] Length = 989 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 177/566 (31%), Gaps = 133/566 (23%) Query: 2 KATTAMSVH-----LVWLRNDLRITDNKALYAACHNSD---------------------- 34 + + M+V L LR D+R++DN +AA + Sbjct: 296 EKHSTMAVEKPRILLYILRRDVRLSDNPVFHAASQQTRLNTAAAAKAANPSPQSDRRGRD 355 Query: 35 ------------AKVIAVFIATPEQ-----------------------WRQHGISARQSH 59 ++ V++ Q + + Sbjct: 356 DSLTSEHASTDFTHLLPVYVFPANQVEISGFLSSPSDKNPYPEARSQVAKIWRTGPHRIR 415 Query: 60 FIYASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 F+ +++ L G + + D L+ Y Q+ ++ Sbjct: 416 FMAEGAWDLKRKLESLKCGSGLEMRVGAIPDVVSNILEWYSKQEDSKGKVTGVWMTDDDG 475 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY------TPFRKALIQNLVQ 171 +K EK L+ D V ++ YK + ++ L Sbjct: 476 TEEKSDEKTLKSLTEKHRVDFKVYRDEKYYVDDRDLSYKNISELPNVYTSYRKALEPLRD 535 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI--------------------DPMFPIG 211 P P P R F P P +P Sbjct: 536 RPRNEFPAPTQLPPLPEHIPPQQRPFTIPDNLDALLQALSSPLEKDPTYTLSEPPKYPTD 595 Query: 212 EQNALHI-----------LRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259 Q+A + Y E R+ + + +++LS +L+ G L+ R Sbjct: 596 VQSAHPFAGGETSALNRVSHLISSGAMSSYKETRNGMLGLDFSTKLSAFLAQGHLTARHV 655 Query: 260 WNRLKEEFVDLL---------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 + + +G + EL+WR++ R M + I Sbjct: 656 HWAMFDFEEGRGPGKDVKGYGQGENAGTAAVRFELLWRDYMRLCMRKFGDRMFHLYGIQN 715 Query: 311 TEKIEWNKDSHLLQ---------------------AWKQGYTGFPIIDAAMRQLNTIGWM 349 + + N+ ++ G TG +IDA+ R+L G+ Sbjct: 716 QDAKDGNRPQMKKWKKLDGSGGAGDDPKQTLEAFTRFRSGRTGVGLIDASNRELFVTGYT 775 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR R ASFL L +DWRIG E++ L D D ASN G WQ+ A GND R+F Sbjct: 776 SNRARQNVASFLASHLNIDWRIGAEWYECFLTDYDCASNWGNWQYVAGVGNDPRQ-GRVF 834 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNV 435 NP Q +DP+G +I+ W+PEL + Sbjct: 835 NPVKQAFDYDPKGEYIKAWVPELRGI 860 >gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M01-240355] Length = 433 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 174/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL AA +I ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P R Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus] gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus] Length = 499 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 11/251 (4%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFYRHLMAF 297 S +S L G LS R + + + F + G +LIWRE++ + Sbjct: 215 PPSSMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVH 274 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + + + L WK+G TGFP+IDAAMRQL GW+H+ LR IT Sbjct: 275 NPHYAVMELNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNIT 334 Query: 358 ASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTIQG 415 A+FL + L + W G ++F+ LLD D + G W W +S+ + + +P Sbjct: 335 ATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALA 394 Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 +R DP+G +++ +LPEL P Y+H P + + +YP P+V+ + Sbjct: 395 RRLDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKC 454 Query: 470 TLNQYYAAKKQ 480 N+ A +++ Sbjct: 455 NANKMNAIRQK 465 >gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis NZ-05/33] Length = 433 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P R Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710] Length = 433 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 173/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W W A++ R P R Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNW-WLAAS--------RHTCPDIAAASYRT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTFI+ +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL J2-003] Length = 127 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 6/122 (4%) Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +L+DWR GE+YF L+D D ASN GGWQWAASTG D+VPYFRIFNP Q ++FDP G F Sbjct: 1 MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478 IR ++ EL N+P ++IH P + L +YP PI+DHK+ + +Y +K Sbjct: 61 IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120 Query: 479 KQ 480 + Sbjct: 121 EH 122 >gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis M0579] Length = 433 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 172/458 (37%), Gaps = 40/458 (8%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A VI ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI S L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +S R E ++ W + +I R+F+ L + Sbjct: 236 NTSLMGAYLSAGCISSRLLARESLERRLNA----------WADNIIRRDFFLQLALQHAD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGQTGIPIIDAAMRCLHKTGGLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 L + R GE +F QL D D+A N G W+ AAS + R DP Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAASRHTYP-------DIAAASYRTDP 389 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 GTFI+ +PEL ++ +H P + D + YP Sbjct: 390 DGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis] Length = 606 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 147/396 (37%), Gaps = 24/396 (6%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 IS + F+ L + +L + + + ++++L + Sbjct: 10 GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIR----GQPANVFPRLFKEWKISRLTF 65 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQ 167 E RD ++K + + S I+ + + LI Sbjct: 66 EYDSEPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 125 Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNAL 216 + ++ + + VTP + + +++ ++P GE AL Sbjct: 126 RMDPPEMPVEMLSGNLMGRCVTPISEDHGEKFGVPSLEELGFDIEGLPSAVWPGGETEAL 185 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + + K + +R + LSPYL G LS R + +L + + + Sbjct: 186 TRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKK 245 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 S +L+WREF+ P + P +I W+++ L W + TG Sbjct: 246 NTSPPL-SLYGQLLWREFFYTAATNNPRFDKME-GNPICVRIPWDRNMEALAKWAEAKTG 303 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391 FP IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G Sbjct: 304 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGS 363 Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 W W + + +F + P G+R DP G FI Sbjct: 364 WMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGDFISR 398 >gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15] Length = 582 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 153/481 (31%), Gaps = 78/481 (16%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDA-----------------------------KVIA 39 + L LR D+R++DN A +AA + + Sbjct: 7 IVLYILRRDIRLSDNPAFHAAAQQTQRANSRKSSPNGERRGRDDSLTSEHGGAPFTHFLP 66 Query: 40 VFIATPEQWRQHG-----------------------ISARQSHFIYASLLQVQKSLSQKG 76 V++ P+Q G ++ FI + +++ L G Sbjct: 67 VYVFPPKQIETSGFLASPSDKSPYAEARSQFAKVWRTGPHRAKFIGQGVWGLKQQLENLG 126 Query: 77 --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 + + ++++SY L+ + ++ + + Sbjct: 127 CGSGLEMRVGMVDEVVRDFINSYSLKDGEDE---SKPKITGVWMTSDDGTEERDEVKAVR 183 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 +P + + I +L+++ S N Sbjct: 184 KVAAENDIPFKLWADEKFYIDDGGEEHGLDRIAHLIRSGAMSSYK---------ATRNGM 234 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 D+ + + E+ + + + G Sbjct: 235 LGLDFSTKLSAYLAQGHITARQVHWAMKDFEEGRGEGKGI--------AGYGKGENEGTA 286 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 + R + + + + + + + K P Sbjct: 287 AVRFELLWRDYMRLCMRKFGHKMFALYGIQPHRKGQGDEPIYKKRWRMVHK---PNGAGD 343 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + K+ Q ++ G TG +IDA+ R+L G+ NR R ASFL L +DWRIG E Sbjct: 344 DHKKNMETFQRFRSGRTGVGLIDASNRELFCTGYTSNRARQNVASFLSSHLDIDWRIGAE 403 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 ++ L+D D+ASN G WQ+ A GND RIFNP Q +D +G +I+ W+PEL Sbjct: 404 WYEMLLIDYDVASNWGNWQYVAGVGNDPRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQ 462 Query: 435 V 435 + Sbjct: 463 L 463 >gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase; photoreactivating enzyme) [Neisseria meningitidis 8013] Length = 433 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 172/460 (37%), Gaps = 44/460 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + A T + LVW R +LRI DN AL A +I ++I + R++ F Sbjct: 9 LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDD-----AETDNPRRAAF 62 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S ++ + L+ +GI L ++ + + + + + D Sbjct: 63 YRQSAAELAQGLAGRGIPLYTAASPAG------LVRLAVRLNIRAVIADESHTFADKLAD 116 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L I +F + + + L + + + + P Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + I GE A R+F ++ Y V + D P+ + Sbjct: 177 FAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLK-DFPSRK 235 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 TS + YLS G +SPR E ++ W + +I R+F+ L + Sbjct: 236 HTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLALQHTD 285 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T ++ W+QG TG PIIDAAMR L+ G +H LR ++A F Sbjct: 286 DDPSDGNPEHTLRLTL---------WQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSADF 336 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP--TIQGKRF 418 L + R GE +F QL D D A N G W+ AAS R P + Sbjct: 337 FCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS---------RHTCPDIAAAAHKT 387 Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458 DP GTF+R +PEL ++ +H P + D + YP Sbjct: 388 DPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426 >gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521] gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521] Length = 881 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 34/294 (11%) Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCW 260 + +D F G+ K V Y + R+ ++++SP+L+ G +SPRQ W Sbjct: 338 ERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPFLAYGSVSPRQIW 397 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---N 317 L + + + EL+WR+++ + + + Sbjct: 398 EALDDH--ERKFGEDQNTYWVRFELLWRDYFFFVAEKFGHLLYDLGGFERATDPRQAAKK 455 Query: 318 KDSHLLQAW--------------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + W +G TG P IDA + +L G+M NR R ASFL K Sbjct: 456 MEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILELRESGFMSNRGRQNVASFLSK 515 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL DWRIG E+F S L+D D SN G WQ+ A GND R FN Q K +D G Sbjct: 516 DLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR-ASRQFNTVKQAKDYDSHGD 574 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLS------------LNYPL-PIVDHK 464 +++ W+P L N+ Y+H P YP P+ +H+ Sbjct: 575 YVKLWIPALRNLHADYVHTPWLLTADERRRYGLKTTKMDVTIDGYPAQPLFEHE 628 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 49/158 (31%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKV-------------------------IAVFI 42 SV + LR DLRI DN Y A V + VF+ Sbjct: 27 SVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVFV 86 Query: 43 ATPE--------------------QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 ++ ++ F+ S+ V+ L G Sbjct: 87 FDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFIR 146 Query: 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 F + + + + + E+ Sbjct: 147 ----FGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYP 180 >gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin] Length = 244 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G F LLD D Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 + N G W W + + +F + P G+R DP G +++ +LP+L P++YI+ P Sbjct: 61 FSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119 Query: 445 SWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + + K + ++YP P+V+H + + + +Q Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 161 >gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102] Length = 413 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 49/450 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 9 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I E L + + Y E+R+D LL L Sbjct: 65 RLAAHHIPLYAVASD------EDLLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + + + L Y +T +++A +Q + +P V Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELP-------VQ 171 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F A+ P + G + A K+ + +Y ++ PA + TS L+ YL Sbjct: 172 TGQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYL 231 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL++LI+R++ L Sbjct: 232 SAGCISPRLLAAESLANR----------HFEWLDKLIFRDYCYQLAYHR----------- 270 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + + + W+ G TG P+IDA++R L G +H L+ + A + L +D Sbjct: 271 --RLPETTDAAPVREYWRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALNLDP 328 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + S D A N W AA R + DP G++IR +L Sbjct: 329 NQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYL 381 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 PEL ++P+ IH P + D D + YP P Sbjct: 382 PELAHLPSTLIHTPWAAADDID-THGYPFP 410 >gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521] gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521] Length = 684 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 114/271 (42%), Gaps = 29/271 (10%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFY 298 T+ LSPYL G LS R+ W +E K+G + +L++R+ Y Sbjct: 305 PSTTLLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRDMYACAEYAI 364 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ--------------------AWKQGYTGFPIIDA 338 ++W +H + A+K G TGFP IDA Sbjct: 365 GDAFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDA 424 Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 MRQL GWMH+ R A+FL + + W G E F L+D D SN G W W + Sbjct: 425 LMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSC 484 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451 + + YFR++ ++D G +R + PEL P +YI+ P + Sbjct: 485 SAFFTQ-YFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGCI 543 Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482 + +YPLP++D K+A + + + +L Sbjct: 544 IGKDYPLPMLDEKEAKAENMARMKICYQANL 574 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%) Query: 7 MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS H L W R DLR+ D+ AL AA A + V+ P +H + + F+ Sbjct: 1 MSKHVRVLYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLE 60 Query: 64 SLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 S++ + K++ +Q + + E L + +T L + Sbjct: 61 SMIALSKNITSTQSNSQLLVVR----GEPTELLPELWKRWSITHLVFE 104 >gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5] gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Acidiphilium cryptum JF-5] Length = 389 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 7/228 (3%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYP 299 S+LSPY + G +S R+ ++ + GA S++ L W + + P Sbjct: 80 CSRLSPYFAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEP 139 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +PF E + D L AW +G TG+P IDAAMR L GW++ R+R + S Sbjct: 140 E-AEWRPFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMS 198 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 F DL + W+ D + + Q +G + R+++P QG D Sbjct: 199 FASHDLFLPWQESGLVLARLFTDYEPGIHWP--QCQMQSGETGINTVRVYSPVKQGFDQD 256 Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSLNYPLPIVDHKK 465 P G IR +PEL V +H P ++ L YP IV H++ Sbjct: 257 PAGRLIRLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 304 >gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114] Length = 411 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 106/450 (23%), Positives = 165/450 (36%), Gaps = 49/450 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 7 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---SQRPSENHNPRQSLFHYQAAQELHT 62 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I E L + + Y E+R+D L Sbjct: 63 RLATHHIPLYVVASD------EDLLPLAAAFNAHTVITDEAYTEAEIRQDNHLWHNFDRA 116 Query: 131 VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + + L Y + +++A +Q +P V Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELP-------VQ 169 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F A+ P + G + A K+ + +Y ++ PA + TS L+ YL Sbjct: 170 TRQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYL 229 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 S G +SPR F WL++LI+R++ L Sbjct: 230 SAGCISPRLLAAEGLANR----------HFEWLDKLIFRDYCYQLAYHR----------- 268 Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 E + + + W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 269 --RLPETTDAAPVREYWRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDP 326 Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 G + S D A N W AA R + DP G++IR ++ Sbjct: 327 NQGIAWAASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYV 379 Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 PEL ++P+ IH P + D D + YP P Sbjct: 380 PELAHLPSTLIHTPWAAADDID-THGYPFP 408 >gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 675 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 96/541 (17%), Positives = 174/541 (32%), Gaps = 117/541 (21%) Query: 11 LVWLRNDLRITDNKALY-AACHNSD----------------------------AKVIAVF 41 L LR D+R++DN + AA + ++ V+ Sbjct: 10 LYVLRRDVRLSDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGGASFTHLLPVY 69 Query: 42 IATPEQW----------------------RQHGISARQSHFIYASLLQVQKSLSQK--GI 77 + + Q + + FI + ++ L+ G Sbjct: 70 VWSANQIEVSGFLPASTPSPYPEARSAVAKVWRTGPHRVQFIADGVWDLKNKLADLDCGS 129 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 + + + LD Y + ++ E + + + + Sbjct: 130 GLEQRVGKITEVVSDILDWYAKDENEGEISGVWMTEDDATEEKREEAELAKITKQHGVDF 189 Query: 138 DSVLLPPGSILNHALQMYKV-----YTPFRKALIQNLVQADLRSLPVP------------ 180 I + L + + + + L +LP P Sbjct: 190 KVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKVFEPLRDRPRETLPTPSLLPPLPPSIPP 249 Query: 181 -------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + P +P + Q+ P I Sbjct: 250 QKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRIAHL 309 Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLL 271 + Y + R+ + + +++LS YL+ G ++ RQ + E+ Sbjct: 310 VASGAMSSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMLDFEEGRGPGEKKHAYG 369 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCM-----------------GKPFIPWTEKI 314 G + EL+WR++ R M + K + Sbjct: 370 QGENEGTAAVRFELLWRDYMRLCMRKFGHKMFGLYGIQDRGAKGSQHKKWKKLYKGEDGE 429 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + K + + ++ G TG +IDA+ R+L G+ NR R ASFL L +DWR+G E Sbjct: 430 DPQKTMEVFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAE 489 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434 ++ L+D D ASN G WQ+ A GND R+FNP Q +D +G +I+ W+PEL + Sbjct: 490 WYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEYIKAWVPELRD 548 Query: 435 V 435 + Sbjct: 549 I 549 >gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus] Length = 243 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 +G TGFP IDA M QL GW+H+ R A FL + DL V W G F LLD D + Sbjct: 1 EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60 Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 N G W W + + +F + P G+R DP G +IR +LP+L P++YI+ P + Sbjct: 61 VNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119 Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 + K + ++YP PIV+H + + + +Q Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 159 >gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236] Length = 120 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 71/115 (61%), Positives = 83/115 (72%) Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD G FI Sbjct: 1 MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60 Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 R WLPEL VP IH P W D+ L+YPLP+VDHK A TL + AK+ Sbjct: 61 RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKRD 115 >gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC BAA-1200] Length = 456 Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 112/451 (24%), Positives = 173/451 (38%), Gaps = 33/451 (7%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 +LR+ N L A AV+ + RQ +F+ +L ++ L+ Sbjct: 36 FTRNLRLAANP-LLHAVQ-YGIPAAAVYFL------PAHSNPRQMYFLSQTLAELSDGLA 87 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 + GI + E L++ + +L + +R R+Q+ Sbjct: 88 EYGIPLHVFE----GSPTEHLNALMARYPTARLITAQH-----IRLPDDPSCRVQYVQEE 138 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + L L +Y+ + + ++ + D R+ + P Sbjct: 139 ILPLPVRRTTLDTSLPPDLVVYR--DAWLRKAAKSAEETDSTPDKAAVRRVQQHLPPELR 196 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 A GE A R F + YY + RD PA +GTSQLS L G+ Sbjct: 197 DAPPPPSVSAQTLPQTGGETAAWTAWRAFTPKLPYYGLM-RDFPAQKGTSQLSAALRFGL 255 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 L R+ ++ + K F R + + + + + P Sbjct: 256 LPVRRLARTVQVMGGESAEKWLHSVFYGDYC-RRRMPFAAGLWAWEDGALVEIRPPAAAP 314 Query: 314 IEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 A W++G TG P+IDAAMR L+ GWMH RLR + A+F V L + Sbjct: 315 AMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHPRLRSLCAAFAVSALGIPQA 374 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 GE F + L D D ++N GWQ AA+ R+ NP + + DP G FIR LP Sbjct: 375 AGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNPFAESQNLDPGGRFIRSHLP 426 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 E+ ++P IHAPH L+ YP PIV Sbjct: 427 EIAHLPDNIIHAPHRAGSGVSLN-GYPAPIV 456 >gi|330951090|gb|EGH51350.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7] Length = 108 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 52/97 (53%), Positives = 65/97 (67%), Gaps = 1/97 (1%) Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 +DGDLASNNGGWQW++STG DS PYFRIFNP Q +RFDP+G FI+ WLPEL ++ + I Sbjct: 1 IDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQI 60 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 H P D + +YP PIVD K+ L + A Sbjct: 61 HDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 96 >gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] Length = 144 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 61/141 (43%), Positives = 82/141 (58%), Gaps = 7/141 (4%) Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G+MHNR+RMI ASFL+K+ L+ W+ GE++F L D D ASNN WQW A G D+ Sbjct: 5 WQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAA 64 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457 PYFRIFNP +Q ++F+ +IR ++PEL +P + I P + L NYP Sbjct: 65 PYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYP 123 Query: 458 LPIVDHKKACHHTLNQYYAAK 478 PIVD KK+ L + K Sbjct: 124 KPIVDLKKSRDRALQLHNQIK 144 >gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32] Length = 470 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 115/464 (24%), Positives = 181/464 (39%), Gaps = 46/464 (9%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGI 53 MK + L +DLRI DN+ L+ A + D K+I V I P + ++ Sbjct: 1 MKK-----IGLYLFTSDLRINDNQLLHCAAQSVD-KLIFV-IVEPTLVRFSADLAQEQSY 53 Query: 54 SARQSHFIYASLL--QVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYN 109 A + F+ S+ ++ +L + G ++ D + + L Q VT F N Sbjct: 54 GAHRQTFVSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFAN 113 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 +E + L+ R +I S L + ++ +T FRK + Sbjct: 114 AHCGYDERQLIHSLQSR-HPDLITCLPHHSTLFDSHEMPFELSKVPSSFTKFRKLVEHLD 172 Query: 170 VQ-----ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 V PV T I + + + H+ F Sbjct: 173 VNGGETVIAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFAH 232 Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + Y + R+ I+ +++ SP+L++G +SP+ LK+ ++ + Sbjct: 233 DYALNYKQTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIEHGSND--STYWIYF 290 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-WKQGYTGFPIIDAAMRQ 342 EL+WRE++ G + S+L A WK G T +PI+DA MRQ Sbjct: 291 ELLWREYFYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLNFAKWKSGNTNYPIVDACMRQ 350 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 LN G+M NR R + AS L+ +L +DWR G YF SQL+D D+ASN G W + A N Sbjct: 351 LNETGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNSQ 410 Query: 403 VPY------------------FRIFNPTIQGKRFDPQGTFIRHW 428 V R F+ Q +DP FI W Sbjct: 411 VNTQDNKQNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454 >gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta proteobacterium KB13] Length = 416 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 88/422 (20%), Positives = 165/422 (39%), Gaps = 18/422 (4%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 MS ++ W RN+LRI DN L +S + V+I G ++ F+ +L Sbjct: 1 MSHNIFWFRNNLRIHDNYPLVQCIKDS-TSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q++ +LS G + + + S Q ++ K++ + E + + Sbjct: 60 QLKINLSDLGHELYIIE----GEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSIT-- 113 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + +D ++L + T +K ++ + L +P Sbjct: 114 --QTDVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVELKPITATLYEGLTLPKPANLS 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY---YVEQRDIPA-IQGT 242 + +P F ++D + Y + R+ + Sbjct: 172 NINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQTRNELMGNDFS 231 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ S +L+ G++S RQ + LK + + L EL+WR+++R L Y Sbjct: 232 TKFSVWLAHGLISARQIFTSLKNY--EESNGANESTYWILFELLWRDYFRLLHFKYNRKL 289 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + E E + ++ T I+A +R+L G++ NR+R I ASF++ Sbjct: 290 YFQFGLKNKEINET--SQDNISNLEEANTESSFINAGIRELQNSGFLSNRMRQILASFII 347 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 ++ +DWRIG ++F L+D D+ SN G W + A G D R FN Q +D Sbjct: 348 FEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRG-GRRFNVEKQKNTYDIDN 406 Query: 423 TF 424 + Sbjct: 407 QY 408 >gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01] Length = 422 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 159/400 (39%), Gaps = 20/400 (5%) Query: 36 KVIAVFIA---TP---EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 ++I ++ TP ++ + F+ +SL ++ +SL+ G + + Sbjct: 3 ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLDSSLSELNQSLNHLGQRLWAVELT---- 58 Query: 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149 + + + VT ++ + +E + + H I + ++L + Sbjct: 59 PDQAIKYAVNRFGVTHIYADAFPGSDEQQALDRAVEGASHVKIKQQAIRTLLREEQLPFD 118 Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + + D+ L N+P Y F A Sbjct: 119 LSNL-----PTTFTQFRKQVEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFDAKAAFHG 173 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + H + F Y + R+ + +++ SP+L+ G +SP+ + LK Sbjct: 174 GESRGLEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRYEA 233 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + + EL+WRE++ + I + +H Q WK+ Sbjct: 234 ENGAND--STYWIYFELLWREYFYWYARRHKRQLFRFGGI-QNRAPLTSFYAHRFQQWKK 290 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G T FPI++A M QLN G+M NR R + AS LV +L +DWR G YF SQL+D D+ASN Sbjct: 291 GETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASN 350 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 G WQ+ A G D R FN Q + +DP FI W Sbjct: 351 WGNWQYLAGVGADPRG-SRQFNLEKQTEMYDPHMEFIDRW 389 >gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica] Length = 571 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 97/479 (20%), Positives = 165/479 (34%), Gaps = 39/479 (8%) Query: 9 VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 V L W LR+ DN L AA N A V + + S+ + FI ++L Sbjct: 73 VTLFWFTEAALRLNDNAGLKAAMKNCKA-VRFCYFLDERFINE---SSPRWKFIKSALSD 128 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNRQYEINEVRRDKLLEK 125 + + L G E L V + + R ++ Sbjct: 129 LDEQLKNLGSRLHVLS----GQPSERLPQLFADWNVVRLGFSAHPGCTDMRRRDRAIVSL 184 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+H V D L + A T + + + + + VP + Sbjct: 185 ALRHGVEVVYRDAPQCLYSPRDIIKASGGMPPLTFPSFVGVASQLPEPEKPINVPESDIV 244 Query: 186 GPVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + P+ + +D + GE A + + R+ + Sbjct: 245 MCSVSEDHDEAPQNEILGKKDLDFPWAGGETEARARFMSALRHWLI----NRETQSTPDL 300 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++PY+ G LS RQ ++ + + ++ + + + L + Sbjct: 301 RAVTPYIVQGCLSVRQVYHDVNRVYEEIQGEKA----------TLKLHFAALHRDFLYNL 350 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 P + ++ D ++ W +G TGFP +DA MRQ T GW+ LR FL Sbjct: 351 AVVPNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRTEGWVAPTLRQAVLWFLT 410 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 + +L FMS+ DL G WA+ TG P + DP Sbjct: 411 RGVLWQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCENDVAHKCP-----KVDPN- 464 Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +IR W+PE+ N+ + IH P + Y IV HK + + ++Y+ K+S Sbjct: 465 -YIRQWVPEVANLTDEQIHEPWT----TQTPTEYVSLIVQHKISHRRSESKYHETLKRS 518 >gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis] Length = 662 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 29/196 (14%) Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 +I W+++ L W +G TGFP IDA M QL GW+H++ R +A FL + L Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511 Query: 373 E----------------------EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 + F LLD D + N G W W + + +F+ + Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFKCYC 570 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464 P G+R DP G +IR ++P L + P +YI+ P + + + ++YP P+++H Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630 Query: 465 KACHHTLNQYYAAKKQ 480 + + + +Q Sbjct: 631 EGSRLNIERMKQVYQQ 646 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL A +D+ + V++ P + + F+ +L Sbjct: 1 MVVNSVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 + SL + + + Sbjct: 60 EDLDCSLKKLNSRLFVVR----GQPTDVFPRLLK 89 >gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1] gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH Length = 678 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 100/518 (19%), Positives = 167/518 (32%), Gaps = 75/518 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGI--------------- 53 + LR DLR TDN L+ + ++ ++I P Q G Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67 Query: 54 -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105 ++ F + V+K+ G D + S + + Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY------- 158 ++ + E+ + I L+ Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFKLWHDEKYFIDEKTQEPLRERPRPPLPRPQA 187 Query: 159 -----TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 P Q + + L P F GE Sbjct: 188 GSLPSFPSWIPPQQAPFRIPDDYDEFERLLLEPVKAPIISDPPQFPEGAKSAHPFKGGET 247 Query: 214 NALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKE------ 265 A L K + Y E R+ + +++LS +L++G ++ R L + Sbjct: 248 PAWDRLYHLIKSGAMTTYQETRNGLLGTEYSTKLSAFLAMGTITARSIHAELVKFEDGSE 307 Query: 266 ----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI------------- 308 G + EL+WR++ R + + Sbjct: 308 ESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGASGNYTKKWLT 367 Query: 309 ------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + ++ W +G TG ++DA+ R+L G+ NR R AS+L Sbjct: 368 DREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNRARQNVASYLT 427 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 K L +DWR+G EY+ L+D D SN G WQ+ AS GND P R FN Q +D G Sbjct: 428 KSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQASCGND--PRSRSFNQVKQAFDYDQDG 485 Query: 423 TFIRHWLPELNNVPT-QYIHA----PHSWLDKNDLSLN 455 F R W+ E+ ++ +++ P L+K+ LS N Sbjct: 486 RFTRTWVNEVKSIDRLEHVFQICTCPKQELEKHGLSDN 523 >gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM 18053] Length = 396 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 154/401 (38%), Gaps = 20/401 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65 + W RNDLR+ DN+AL AA ++D ++I V++ P Q+ + + R+ + F+ S+ Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++++ QKG + ++ +++ E R + L K Sbjct: 65 AELRENIRQKGGDLIIRT----GAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSK 120 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L+ + + + L + + L+ N ++ + +I L Sbjct: 121 NLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFPTPASITLP 180 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---- 240 V IP + + P G ++ ++DI Sbjct: 181 ADVEAGAIPGLPELGIDPNEIPAGTTGPLAGGEARALAVLKEYVEEYVKKDIAYPSAEPL 240 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 ++LS +LS+G +S + +K +++ + L+ REF + + Sbjct: 241 TDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVE-----DPIITNLLRREFLHWTLLRFGP 295 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + W D+ + W G TG I+ +R+L G++ R A + Sbjct: 296 RMFKPSGVKHHFNRRWKNDNAAFEKWINGQTGDQSINDIIRRLTATGFITAAERESAARY 355 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 LV DL ++W G YF S L+D + + N G W A G D Sbjct: 356 LVDDLDINWTWGAMYFESLLMDYEASVNWGRWNHIAGVGED 396 >gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703] Length = 428 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 155/449 (34%), Gaps = 47/449 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q + RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAV-ASGLPITCVWV---SQRPSENHNPRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I D L + + + + L H Sbjct: 80 RLAAHHIPLYVVAS----------DEDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHN 129 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 G + L A + +L PV Sbjct: 130 FDQAGIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKL--PVQI 187 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 F A+ P + + A K+ + +Y ++ PA + TS L+ YLS Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAFKQNLVHYPITQNFPARKNTSLLNAYLS 247 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR F WL++LI+R++ L Sbjct: 248 AGCISPRLLAAESLANR----------HFEWLDKLIFRDYCYQLAYHR------------ 285 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + + + W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 286 -RLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDPN 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G + S D A N W AA R + DP G++IR +LP Sbjct: 345 QGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSYLP 397 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 EL ++P+ IH P + D D + YP P Sbjct: 398 ELAHLPSTLIHTPWAAADDID-THGYPFP 425 >gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis HKU09-01] Length = 424 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 121/418 (28%), Positives = 191/418 (45%), Gaps = 25/418 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M++ LV L R+ N +++ A + + P + + + F + ++ Sbjct: 1 MNIALV-LNRVFRLEQNPMFEY-LNHNQADIERCYCVIPLEL-FEDEAPLKRTFYHQAVT 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 Q + L + GI S+C Q+ + + + +L + Sbjct: 58 QFIQQLIEIGIKPFVF-------PYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110 Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + ++ + + P LN Q YKV+T F KA L Q + ++ Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 I + + + IGE + + F + +Y R+ TS Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 QLS L+ G L + +L E + D + +++ EL++REFY LM +YP Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAH 279 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 F + I W+++ AWK+G TG+PIIDAAM +L G+MHNR+RM+TA FL K Sbjct: 280 -TSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 +L +DW GE YF + L+D D ASN GWQW+ASTG D+VPYFR+FNP Q +RFD + Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKK 396 >gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens NRL30031/H210] Length = 428 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 155/449 (34%), Gaps = 47/449 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 LVW R +LR+ DN AL AA S + V++ Q ++RQS F Y + ++ Sbjct: 24 LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---SQRPSENHNSRQSLFHYQAAQELHT 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ I D L + + + + L H Sbjct: 80 RLAAHHIPLYVVAS----------DEDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHN 129 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 G + L A + L PV Sbjct: 130 FDRAGITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETEL--PVQT 187 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 F A+ P + G + A K+ + +Y + PA + TS L+ YLS Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQTFPARKNTSLLNAYLS 247 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SPR F WL +LI+R++ L Sbjct: 248 AGCISPRLLAAEGLANR----------HFEWLEKLIFRDYCYQLAYHR------------ 285 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 E + + + W+ G TG PIIDA++R L G +H L+ + A + L D Sbjct: 286 -RLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFDPN 344 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G + S D A N W +AA R + DP G++IR ++P Sbjct: 345 QGIAWTASVQTGTDPALNQANWHFAAQDTATVRYAHR-------SHQIDPDGSYIRSYVP 397 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459 EL ++P+ IH P + D D + YP P Sbjct: 398 ELAHLPSTLIHTPWAAADDID-THGYPFP 425 >gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium tuberculostearicum SK141] Length = 158 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 23/153 (15%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+ G TG P++DA MR+L G+MHNR+RM+ SFL K+L + WR+GEE+F L+D D Sbjct: 28 WQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADA 87 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 ASN WQW A G+D+ P+FRIFNP Q KRFDP G ++R W P L+ Sbjct: 88 ASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALSA----------- 136 Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 PIVD +++ L+ Y K Sbjct: 137 ------------PPIVDLQESRQAALDAYAEIK 157 >gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 7/208 (3%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181 Query: 448 DKN------DLSLNYPLPIVDHKKACHH 469 + +L NYP PIV +A Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEAKAR 209 >gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris] gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 209 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 7/208 (3%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181 Query: 448 DKN------DLSLNYPLPIVDHKKACHH 469 + +L NYP PIV +A Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEAKAR 209 >gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1] Length = 678 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 97/542 (17%), Positives = 171/542 (31%), Gaps = 118/542 (21%) Query: 11 LVWLRNDLRITDNKALY-AACHNSD----------------------------AKVIAVF 41 L LR D+RI+DN + AA + ++ V+ Sbjct: 10 LYVLRRDVRISDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGGASFTHLLPVY 69 Query: 42 IATPEQW----------------------RQHGISARQSHFIYASLLQVQKSLSQK--GI 77 + + Q + + FI + ++ L+ G Sbjct: 70 VWSANQIEVSGFLPASTPSPYPEARSAVAQVWRTGPHRVQFIADGVWDLKNKLAGLDCGS 129 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 + + + L+ Y + + E + + + + Sbjct: 130 GLEQRVGRLTEVVSDILNWYSKDENEGVISGVWMTEDDATEEKQEEAELAEITKQHGIDF 189 Query: 138 DSVLLPPGSILNHALQMYKV-----YTPFRKALIQNLVQADLRSLPVP------------ 180 I + L + + + L +LP P Sbjct: 190 KVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKAFEPLRDRPRETLPTPSQLPPLPPSIPP 249 Query: 181 -------------------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + P +P + Q+ P I Sbjct: 250 QKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRIAHL 309 Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL---------KEEFVDLL 271 + Y + R+ + + +++LS YL+ G ++ RQ + E+ Sbjct: 310 VASGAMGSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMFDFEEGRGPGEKRHAYG 369 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCM------------------GKPFIPWTEK 313 G + EL+WR++ R M + K + Sbjct: 370 QGENEGTAAVRFELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKWKKLHKSGEDG 429 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 K + + ++ G TG +IDA+ R+L G+ NR R ASFL L +DWRIG Sbjct: 430 ENPQKTMEIFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRIGA 489 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 E++ L+D D ASN G WQ+ A GND R+FNP Q +D +G +I+ W+PEL Sbjct: 490 EWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEYIKAWVPELR 548 Query: 434 NV 435 ++ Sbjct: 549 DI 550 >gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus] Length = 378 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 143/384 (37%), Gaps = 24/384 (6%) Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + L + +L + + + + +TKL E RD Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWNITKLSIEYDSEPFGKERD 57 Query: 121 KLLEKRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++K + S I+ + + LI + ++ + Sbjct: 58 AAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETI 117 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVY 228 + + TP + Y +++ ++P GE AL L + + K + Sbjct: 118 TSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAW 177 Query: 229 YYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +R + LSPYL G LS R + RL + + + S + Sbjct: 178 VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPL-SLYGQ 236 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L+WREF+ P + P +I W+K+ L W +G TGFP IDA M QL Sbjct: 237 LLWREFFYTAATNNPRFDKME-GNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 295 Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 296 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-Q 354 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRH 427 +F + P G+R DP G +IR Sbjct: 355 QFFHCYCPVGFGRRTDPNGDYIRR 378 >gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 114 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 2/115 (1%) Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D PYFRIFNP QG++FDP G Sbjct: 1 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 FIR W+PEL +V + YIH P ++ N + YP +VDHK+ TL Y AK Sbjct: 61 FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 113 >gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 206 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 7/205 (3%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181 Query: 448 DKN------DLSLNYPLPIVDHKKA 466 + +L NYP PIV +A Sbjct: 182 ESVLQAAGIELGSNYPRPIVGLDEA 206 >gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM 45100] Length = 216 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 22/232 (9%) Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK---PFIPW 310 +SPR W + E + +S A ++ +LIWR+F H + P++ F + Sbjct: 1 MSPRTVWATISEA-AERGEIAESEAGAFRRQLIWRDFAWHRLYHVPTLATCNVQAKFNRF 59 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 +DS AWK+G TG P++DA MR+L G MHNR+RM+ S L K+LL+ WR Sbjct: 60 PWGWNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNLLIHWR 119 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 +GEE+F L+D D A N WQW A G+D+ PYFRIFNP Q + FD + + + W+P Sbjct: 120 LGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQQTWVP 179 Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQS 481 E Y P PIVD K++ L Y + + Sbjct: 180 E-----------------AQTNHDGYPPQPIVDLKQSRAEALAVYESLGQDP 214 >gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas] Length = 393 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 142/399 (35%), Gaps = 27/399 (6%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 LR+ DN +L D + VFI E + F+ L + K+L G Sbjct: 2 LRLHDNPSLIDGLSECD-RFYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 Q + L+ + VTK+ + E RD+L+ + L + + Sbjct: 61 RLYCFQ----GQPTDILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 S L + T L+ + + R + P N + F Sbjct: 117 VSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQNHDKQF 176 Query: 198 DYPFQAIDPMFPIGEQNALHILRK-------------------FCKEKVYYYVEQRDIPA 238 P + P E+ ++ E Y Q Sbjct: 177 GIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQYHPDL 236 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + LS +L G LS R+ + + ++F ++ S +L+WRE++ + Sbjct: 237 LSPPLSLSAHLRFGCLSVRKFYWSIHDKFEEVK-PSMGAPVSLSAQLMWREYFYTMAINN 295 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + P I W + + W QG TG+P IDA M+QL GW+H+ R + Sbjct: 296 INYDKMET-NPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHVARHAVS 354 Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 FL + DL ++W +G + F LLD D + G W W + Sbjct: 355 CFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWLS 393 >gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 117/266 (43%), Positives = 160/266 (60%), Gaps = 2/266 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLRI DN AL AAC DA V+A+FIATPEQWRQH ++ RQ+ + A L Sbjct: 1 MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +Q SL++KGI Y + +F + + + C Q VT L+YN QYE NE +RD+ LEK Sbjct: 61 DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L V+C+ FDDSV+L PGS++ + +MYKV+TPF+ A I+ L + + P +R Sbjct: 121 L-AGVVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVR-GE 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +T R + +FP E+ A+ LR+FC + Y +RD PA +GTS+LS Sbjct: 179 TITDMPAIRLNYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSRLS 238 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLI 272 L++G LSPRQC +RL E L Sbjct: 239 ACLALGALSPRQCLHRLLAEQPQGLD 264 >gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica] Length = 377 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 24/374 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL SD + V+I P + + F+ L Sbjct: 1 MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +L + + + + ++++L E RD ++K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKK 115 Query: 126 RLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + S I+ + + LI + ++ + A + Sbjct: 116 LASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175 Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQ 233 TP + Y +++ ++P GE AL L + + K + + Sbjct: 176 GKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFE 235 Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R T+ LSPYL G LS + +L + + + S +L+WRE Sbjct: 236 RPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLYKMVKKNSSPPL-SLYGQLLWRE 294 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+ P + P +I W+++ L W +G TGFP IDA M QL GW+ Sbjct: 295 FFYTAATNNPRFDKME-GNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353 Query: 350 HNRLRMITASFLVK 363 H+ R A FL + Sbjct: 354 HHLARHAVACFLTR 367 >gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens] Length = 278 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 8/152 (5%) Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 IDA M QL GW+H+ R A FL + DL + W G + F LLD D + N G W W Sbjct: 1 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60 Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448 + + +F + P G+R DP G +IR +LP L P +YI+ P + + Sbjct: 61 LSCSSFF-QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119 Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + ++YP P+V+H +A + + +Q Sbjct: 120 KCVIGVHYPKPMVNHAEASCLNIERMKQIYQQ 151 >gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata] Length = 438 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 91/438 (20%), Positives = 158/438 (36%), Gaps = 33/438 (7%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQ------WRQHGISARQSHFIYASLLQVQKSL 72 R+ DN A AC V+AV P W G+S + + A++ ++++ L Sbjct: 2 RLQDNPAWTRACAMG-RPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAATVQELRREL 59 Query: 73 SQKGIVFQYHQCSNFDDSIEWLD----------SYCLQQRVTKLFYNRQYEINEVRRDKL 122 G+ + + + + + +L R I + Sbjct: 60 DALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERAQLSSLRASGIVVHSVWQG 119 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + + V + + A ++ P + + D S + Sbjct: 120 TLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDAVSFAEDFV 179 Query: 183 RLTGPVTPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 PR +D + ++ +V Y Sbjct: 180 DGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLESGRVAQYKA 239 Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +S+ SP+L++G +S + LK + G++ EL+WR+++ Sbjct: 240 TRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGTTD--GSYWLWFELLWRDYF 297 Query: 292 RHLM-AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 R L + + K + + W QG TG ++DA MR+L G++ Sbjct: 298 RWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMRELACSGYLS 357 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 NR+R + ASFL+ +L DWR G +F SQLLD D+ SN G W + A G D R FN Sbjct: 358 NRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPRG-GRRFN 416 Query: 411 PTIQGKRFDPQGTFIRHW 428 Q DP G + W Sbjct: 417 VAKQTADHDPDGAYRALW 434 >gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] Length = 286 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 131/301 (43%), Gaps = 46/301 (15%) Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 P F P Q Y + DIP+ TS LS +L Sbjct: 5 PPTFDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLSAHL 64 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SP Q W F D + A+++L +L+WR+F H + + P++ Sbjct: 65 RFGEISPAQIWAET-AAFADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLATRNVREQ 123 Query: 310 WTEKIEWNKDSHLLQA--------------------------WKQGYTGFPIIDAAMRQL 343 + D + W++G TG P++DA MR+L Sbjct: 124 FNAFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGMREL 183 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G MHNR+RM+ S+L K+L + WR GEE+F L+D D ASN WQW A G+D+ Sbjct: 184 WATGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGDDAA 243 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463 PYFRIFNP +Q ++FDPQG +I W+PE H P YP P+VD Sbjct: 244 PYFRIFNPLLQEEKFDPQGIYINQWVPE--------RHTPM-----------YPEPMVDV 284 Query: 464 K 464 K Sbjct: 285 K 285 >gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri] Length = 548 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 135/344 (39%), Gaps = 17/344 (4%) Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210 K + +L + G S+ + +A + Sbjct: 70 CGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGIRADWDISEG 129 Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G ++ + D A S+LSPYL G++SPR ++ L ++ Sbjct: 130 GAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYHDLVKKDGKN 189 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQ 328 + K + + L RE + +P + + + ++ L+ W++ Sbjct: 190 ISKT------FWHRLYRRELAYWQLHHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQR 243 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TGFP++D MR+L GWMH RMITA+FLV L V W G ++FM L+D D A N Sbjct: 244 GETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMRTLVDADEAIN 303 Query: 389 NGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSW 446 + WQ A +G D +F P + DP G I W+PEL +P Y+ H P Sbjct: 304 SMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPRGYLRHRPWEA 363 Query: 447 LDK------NDLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483 +L YP IVD +A L+ + L+ Sbjct: 364 SKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 407 >gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella] gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella] gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella] gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella] gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella] gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella] gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella] gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella] gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella] gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella] gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella] gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella] gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella] gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella] gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella] gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella] gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella] gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella] gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella] gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella] gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|289804363|ref|ZP_06534992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 94 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 55/94 (58%), Positives = 68/94 (72%) Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FIR WLP L ++P + IH P W Sbjct: 1 NNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA 60 Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 +K + L+YP PIV+HK+A TL+ Y AA+K + Sbjct: 61 EKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 94 >gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella] Length = 155 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155 >gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 565 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 13/318 (4%) Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ G V+ + + +A M G + EK + Sbjct: 99 PEHGFAASLEELGIVSDVDKRLDWAAGIRAEWTMSESGAASTWEHFASVGLEKFEDDHGR 158 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYR 292 DI A S LSPYL G +SPRQ ++ L ++ ++ K + + + L REF Sbjct: 159 ADIVAPAAVSTLSPYLRHGQISPRQIYHELATKKMGSDGVEGKKLSRVFWHRLYRREFAY 218 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTIGWM 349 + +P + + + W + W+ G TGFP +DA MR+L GWM Sbjct: 219 WQLHNWPELPSKSVRGHYENRKAWLEGDEAAVALHRWQTGTTGFPTVDAGMRRLWATGWM 278 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RI 408 H RMI A+FLV V W G ++F+ L+D DLA N+ WQ A +G D F Sbjct: 279 HQSERMIAATFLVDYCGVHWTHGADWFLDTLVDADLAINSMMWQNAGKSGLDQWDVFAGS 338 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKN------DLSLNYPLPIV 461 P + DP+G I W+PEL +P ++ H P K +L YP ++ Sbjct: 339 LTPDGSSRAHDPEGESIARWIPELAALPKGHLRHRPWEASAKQLDAAGVELGSTYPTRMI 398 Query: 462 -DHKKACHHTLNQYYAAK 478 D + A L+ A + Sbjct: 399 TDLEGARRRMLDDVNALR 416 >gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris] gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL Sbjct: 6 WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 65 Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 66 ESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWN 125 Query: 446 WLDKN------DLSLNYPLPIVDHKKACHH 469 + +L NYP PIV +A Sbjct: 126 APESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|325518601|gb|EGC98260.1| deoxyribodipyrimidine photolyase [Burkholderia sp. TJI49] Length = 111 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 6/111 (5%) Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFL K LL+DWR GE +F L+D D A+N WQW A G D+ PYFRIFNP Q Sbjct: 1 MVVASFLAKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGVDAAPYFRIFNPVAQ 60 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459 G+RFDP G ++R W+PEL + IHAP L ++YP P Sbjct: 61 GRRFDPHGAYVRRWVPELAGLDDAAIHAPWEASTLALAAAGVRLGVDYPAP 111 >gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 155 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + W+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LL Sbjct: 2 YFKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 D DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121 Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469 P + + +L NYP PIV +A Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155 >gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861] Length = 425 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 22/406 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62 V L+W RNDLR DN+ L+ S +I V+ P + ++ FI Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++++ G S E + + V ++F++R+ E + Sbjct: 63 DAVRELKEKFVAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178 +E L I L L ++ K I+ + Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVM 178 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 V L P+ + PI + K +E + ++ Sbjct: 179 VTHPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDYM 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + LSPY++ G LSP ++++K+ + L K +L+WR+++R ++ Y Sbjct: 239 M-----LSPYIAAGALSPIYLYHKIKDAKLVLNKKRT---EKLTAQLLWRDYFRFMLKKY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+V K +E + L+ W+ G TG+ ID AM+ L+ G + + ++ I + Sbjct: 291 PNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSDIKKIVS 350 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 F V++ DWR G YF L+D A+ G W A G Sbjct: 351 LFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGTSIKN 396 >gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum ATCC 33300] Length = 425 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 86/406 (21%), Positives = 152/406 (37%), Gaps = 22/406 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62 V L+W RNDLR DN+ L+ S +I V+ P + ++ FI Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 ++ ++++ + G S E + + V ++F++R+ E + Sbjct: 63 DAVRELKEKFAAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178 +E L I L L ++ K I+ + Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVM 178 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 V L P+ + PI + K +E + ++ Sbjct: 179 VTHPHLEKTTIPTLEELGYTAEEIQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDYM 238 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + LSPY++ G LSP ++++K+ + L K +L+WR+++R ++ Y Sbjct: 239 M-----LSPYIAAGALSPIYLYHKIKDAKLVLNKKRT---EKLTAQLLWRDYFRFMLKKY 290 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P+V K E + + L+ W+ G TG ID AM+ L+ G + + L+ I + Sbjct: 291 PNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSDLKKIVS 350 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 F V++ DWR G YF L+D A+ G W A G Sbjct: 351 LFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVGTSIKN 396 >gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus tauri] Length = 489 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 135/344 (39%), Gaps = 17/344 (4%) Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210 K + +L + G S+ + +A + Sbjct: 11 CGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGIRADWDISEG 70 Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 G ++ + D A S+LSPYL G++SPR ++ L ++ Sbjct: 71 GAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYHDLVKKDGKN 130 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQ 328 + K + + L RE + +P + + + ++ L+ W++ Sbjct: 131 ISKT------FWHRLYRRELAYWQLHHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQR 184 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TGFP++D MR+L GWMH RMITA+FLV L V W G ++FM L+D D A N Sbjct: 185 GETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMRTLVDADEAIN 244 Query: 389 NGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSW 446 + WQ A +G D +F P + DP G I W+PEL +P Y+ H P Sbjct: 245 SMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPRGYLRHRPWEA 304 Query: 447 LDK------NDLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483 +L YP IVD +A L+ + L+ Sbjct: 305 SKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 348 >gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+] gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+] Length = 813 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG +IDA+ R+L G+ NR R ASFL K L +DWR G E++ L+D D++SN Sbjct: 508 GTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEMLLVDYDVSSN 567 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWL 447 WQ+ A GND + RIFNP QG +DP G+++R W+PE++ + + P + Sbjct: 568 WANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLENAFQPWTAS 627 Query: 448 DKN 450 + Sbjct: 628 KEE 630 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 34/210 (16%) Query: 3 ATTAMSVH-------LVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQW--- 48 + M+V + +R DLR +DN +AA D + + V++ +Q Sbjct: 17 SRAIMTVSKAPQNILIHIIRRDLRTSDNPLFHAAATAPDEEKFDAYLPVYVFDAQQIDVS 76 Query: 49 --------------------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 H ++ F+ ++ + ++L + D Sbjct: 77 GFIQSAGATNPYGSPRSQVAGYHRCGPHRAKFLGEAVWDLSETLKELKSGLFIRVGRIPD 136 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + + +E +E + D+ L +V K Sbjct: 137 VVETLVSELAKKDAKIGAVWMTSHEGSEEKADEKAVASLCKKVGAKWKLWVDEKYFIDDC 196 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + Q K + + + R Sbjct: 197 RVSSQSTKRSSCPCARSLVRFFRLSRRVHC 226 >gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis] Length = 216 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 8/186 (4%) Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + LQ W QG TGFP+IDAAMRQL GW+H+ LR A+FL Sbjct: 1 RMEDNEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLT 60 Query: 363 KD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDP 420 + L +W G YF+ LLD D + G W W +S+ + + + P KR DP Sbjct: 61 RGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDP 120 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474 G +I+ ++PEL NVP +YIH P + + + ++YP ++D A +N Sbjct: 121 MGQYIKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMNAM 180 Query: 475 YAAKKQ 480 + Sbjct: 181 RTLRNS 186 >gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora] Length = 530 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 115/321 (35%), Gaps = 36/321 (11%) Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 Q+ + + + F ++ P I Sbjct: 5 QQSPFSIPDTCEKLVDVVVRPVKNFLKNLPDFPKKAESSHPFRGGETSAHKRIDDLIMSG 64 Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------- 275 + Y + R+ + +++LS YL+ G ++ RQ + L + + Sbjct: 65 GMKRYKDTRNGLLGPEFSTKLSAYLAQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGD 124 Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---------- 324 G + EL+WR++ R Y +D Sbjct: 125 NQGTETVRIELLWRDYMRLCHQKYGDKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALP 184 Query: 325 --------------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + G TG +IDA+ R+L G+ NR R ASFL K + +DWR Sbjct: 185 GQDPTPEKVADILARFNAGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHMEIDWR 244 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G E++ L+D D++SN WQ+ A GND RIFNP Q +D G ++R W+P Sbjct: 245 YGAEWYEMLLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVP 304 Query: 431 ELNNVPT-QYIHAPHSWLDKN 450 E+ + + + + ++ Sbjct: 305 EVASFENLENVFQAWTASKED 325 >gi|295113007|emb|CBL31644.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76] Length = 111 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 6/107 (5%) Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD G FI+ ++PEL VP + Sbjct: 1 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQK 60 Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479 YIH P+ + L NYP PIVD+ + + AKK Sbjct: 61 YIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKNKHCFYMKRAKK 107 >gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii] Length = 180 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 8/180 (4%) Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365 P +I W+++ L W + TGFP IDA M QL GW+H R FL + DL Sbjct: 2 GNPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDL 61 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 ++W G + F LLD D + N G W + + +F + P G+R DP G FI Sbjct: 62 WINWEEGMKIFEELLLDADWSVNAGSWLCHSCSSFF-QQFFHCYCPVGFGRRIDPNGDFI 120 Query: 426 RHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 R +LP L + P ++I+ P + K + ++YP P+V+H +A + + + Sbjct: 121 RCYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERMRQIYQ 180 >gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica] Length = 374 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 142/380 (37%), Gaps = 22/380 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69 + W R LR+ DN+ALY A S V ++I Q + SA ++ F+ L + Sbjct: 8 VHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDLD 66 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + L + G D+ + +C + +T++ + + EI RD+ + K + Sbjct: 67 EGLKKCGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHR 122 Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 I KSF L ++ + A I ++ Q Sbjct: 123 MEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCIAPAVDNH 182 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------QGT 242 + PI L+ + + + T Sbjct: 183 ESTYGIPKISVWGHQAPRSLPIYRGGERQALKALQAKINDPTLFTLNGFNQGVKTKLPHT 242 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LS Y + G +S R W ++ I ++++REF+ ++ A + Sbjct: 243 TYLSAYQNYGCISTRHFWKAAEKLPESKTIM-------LRGQIMYREFF-YVAASQVNNF 294 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +IEW K+ L AW++G TG+P IDA MRQL T G++H+ R ASFL Sbjct: 295 TKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFLT 354 Query: 363 K-DLLVDWRIGEEYFMSQLL 381 L ++W G+E L+ Sbjct: 355 NGQLWLNWEHGQESMFYDLI 374 >gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus] Length = 361 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 23/362 (6%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 LR+ DN AL A ++ + ++I P + + F+ SL + SL + Sbjct: 3 LRLHDNPALQEALRDA-TSLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNS 61 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 + + + VT+L + E RD + K + + + Sbjct: 62 RLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117 Query: 138 DSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 +S I+ + +A+I + V + ++ Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177 Query: 197 FDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----G 241 Y +++ ++ GE AL L K + K + +R Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLAS 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL E + + + + S +L+WREF+ P Sbjct: 238 PTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKF 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 297 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 355 Query: 362 VK 363 + Sbjct: 356 TR 357 >gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 143 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 +P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S+ GW Sbjct: 1 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60 Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450 Q+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + + Sbjct: 61 QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120 Query: 451 ----DLSLNYPLPIVDHKKACHH 469 +L NYP PIV +A Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143 >gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei] Length = 155 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W + + +F + P G+R DP G Sbjct: 2 DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 60 Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477 +IR +LP L P +YI+ P + + K + LNYP P+V+H +A + + Sbjct: 61 YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEASRLNIERMKQI 120 Query: 478 KKQS 481 +Q Sbjct: 121 YQQP 124 >gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus] Length = 361 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 131/362 (36%), Gaps = 23/362 (6%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77 LR+ DN AL +D V V+I P + + F+ SL + SL + Sbjct: 3 LRLHDNPALRECIQGADT-VRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNS 61 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 + + + VT+L + E RD + K + + + Sbjct: 62 RLFVVR----GQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117 Query: 138 DSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 +S I+ + +A+I + V + ++ Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177 Query: 197 FDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----G 241 Y +++ ++ GE AL L K + K + +R Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLAS 237 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL E + + + + S +L+WREF+ P Sbjct: 238 PTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKF 296 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 297 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 355 Query: 362 VK 363 + Sbjct: 356 TR 357 >gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] Length = 164 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 2/166 (1%) Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S+L+ L W + + PS+ + + + +AWK G TG+P+ID Sbjct: 1 MRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMID 60 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MR L W++ R+R + SF L +DWR+ Y D + + Q Sbjct: 61 ACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQ 118 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 +G + RI+NP Q P G FIR WLPEL NV + IH P Sbjct: 119 SGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP 164 >gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter sp. BAL39] Length = 410 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 80/393 (20%), Positives = 140/393 (35%), Gaps = 24/393 (6%) Query: 26 LYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQ 80 L A SD+ ++ V+ P + ++ F+ S+ ++ S Q G Sbjct: 2 LVEAISKSDS-ILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLL 60 Query: 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSV 140 + E + Q +++++++R+ E + +E L I Sbjct: 61 VL----YGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGH 116 Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200 L L ++ K + L I +P D Sbjct: 117 TLYNKEDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDHIEFVENEDWGQLPGLKDLG 176 Query: 201 FQAIDPMFPIGEQNALHILRKFCKE----------KVYYYVEQRDIPAIQGTSQLSPYLS 250 F+ + FP E + Y ++ +S+LS +LS Sbjct: 177 FE--EETFPGEEDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAEREAFSSRLSGWLS 234 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 +G LSPR + +KE L+WR++YR + + + +P Sbjct: 235 LGCLSPRMVYWMVKEAESKFGSNANFNQMLL--GLLWRDYYRFMFKKHGTRFFKEPDFES 292 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + + +L+ WK TG+P+ID M +LN G++ R++ A++LV L V W Sbjct: 293 DFFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVVATYLVHFLKVHWT 352 Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G YF +L+D ASN G W A G D Sbjct: 353 NGAVYFEEKLIDYAPASNWGNWANVAGVGKDGK 385 >gi|323228031|gb|EGA12174.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 84 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 46/84 (54%), Positives = 59/84 (70%) Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 TG D+ PYFRIFNPT QG+RFD G FIR WLP L ++P + IH P W +K + L+YP Sbjct: 1 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYP 60 Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481 PIV+HK+A TL+ Y AA+K + Sbjct: 61 RPIVEHKQARIATLSAYEAARKGA 84 >gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] Length = 150 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + PS+ + + + +AWK G TG+P+IDA MR L W++ Sbjct: 1 MQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDACMRALIATRWLNF 60 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R + SF L +DWR+ Y D + + Q +G + RI+NP Sbjct: 61 RMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNP 118 Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 Q P G FIR WLPEL NV + IH P Sbjct: 119 IKQSIDQYPNGEFIRRWLPELENVSNENIHTP 150 >gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus purpuratus] Length = 463 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 84/438 (19%), Positives = 150/438 (34%), Gaps = 71/438 (16%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS--------------------------------- 33 M + + LRNDLR DN+ L+ A N+ Sbjct: 5 MKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFL 64 Query: 34 -----------DAKVIAVFIATPE------QWRQHGISARQSHFIYASLLQVQKSLSQKG 76 VI ++ P Q+ + F+ S+ ++ +L G Sbjct: 65 LESVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLESVRDLRTTLQSVG 124 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-----V 131 + + + Q ++ E + Q Sbjct: 125 SGLVVRS----GNPEDVVPQLIQQFGEGEVAAVALQEEATREELDVEAGLHQSCSKLGVQ 180 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + K + ++ H ++ VYT FRK + ++P P L V Sbjct: 181 VKKFWGSTLYHREDVPFRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEG 240 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVYYYVEQRDIPA-IQGT 242 +IP F + + + + + Y E R+ + + Sbjct: 241 DIPVFSSFGLKDPGSDSRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYS 300 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++ + +L+ G +SPRQ +K + + + ELIWR++++ + + Sbjct: 301 TKFAAWLAHGCVSPRQIHAEVKRYEKERTENQ--STYWVIFELIWRDYFKFVALKFGDKM 358 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + WNK+ AW +G TG P +DA +R++ G+M NR R ASFL Sbjct: 359 FYLSGL-LGVHKPWNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLT 417 Query: 363 KDLLVDWRIGEEYFMSQL 380 KDL++DWR+G E+F L Sbjct: 418 KDLVLDWRLGAEWFEQML 435 >gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 186 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P + Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAP 181 Query: 448 DKN 450 + Sbjct: 182 ESV 184 >gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 304 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 9/107 (8%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEW 62 Query: 440 IHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477 IH P + +L NYPLPIV+ +A L++ + Sbjct: 63 IHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 109 >gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium IMCC9480] Length = 439 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 147/400 (36%), Gaps = 22/400 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61 MS + W RNDLR+ DN A AC S + ++ VF P W + + F+ Sbjct: 1 MSTVIYWFRNDLRLLDNPAFLLACRES-SHIVPVFCHDPSDRALTHWGFERVGDHRRAFL 59 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 A+L + L+ +G + L + T + +E + Sbjct: 60 AATLADLAAQLAARGSELI----ELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ 115 Query: 122 LLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L L ++ +S P S T KA + V D +L P Sbjct: 116 ALRTAGLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPVPEDYPALIPP 175 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--------YYYVE 232 L P+ P + FP + Y + Sbjct: 176 LPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGGTSAGLAHLHQYLERKLAHTYKD 235 Query: 233 QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ +S+ SP+L+ G LS R +++ D + EL+WR+++ Sbjct: 236 TRNGLMGLDYSSKFSPWLATGALSARTINAAIEQFEDDFGAND--STYWLWFELLWRDYF 293 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R L Y + D+ W G TG PI+DA MR+L T G++ N Sbjct: 294 RFLHLKYGRKLYRHYGLADAGMARPVHDAAQFARWSHGLTGEPIVDAGMRELATTGYLSN 353 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 RLR I AS+L+ DL DWR G +F SQL+D D+ S G Sbjct: 354 RLRQIVASYLIHDLGGDWRAGAAWFESQLVDYDVYSQPGQ 393 >gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis VCU121] Length = 226 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 113/186 (60%), Gaps = 5/186 (2%) Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D + S L YL+ G+L R+ N L E++ +++ ++I+REFY L Sbjct: 46 DDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYESDEK----NYEAFIRDVIFREFYYVL 101 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M YP K F ++W+ + + WK+G TG+PI+DAAM++LN G+MHNRLR Sbjct: 102 MMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQTGYPIVDAAMKKLNRTGYMHNRLR 160 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ + FL K+L +DW GEEYF L+D D ASN GWQW+ASTG D VPYFR+FNP Q Sbjct: 161 MVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHGWQWSASTGTDEVPYFRMFNPIRQ 220 Query: 415 GKRFDP 420 +RFD Sbjct: 221 SERFDK 226 >gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] Length = 164 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 2/166 (1%) Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 S+L+ L W + + PS+ + + + +AWK G TG+P+ID Sbjct: 1 MRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMID 60 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MR L W++ R+R + SF L +DWR+ Y D + + Q Sbjct: 61 ACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYS--QVQMQ 118 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 +G + RI+NP Q P FIR WLPEL NV + IH P Sbjct: 119 SGTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNENIHTP 164 >gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] Length = 368 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 117/379 (30%), Positives = 171/379 (45%), Gaps = 19/379 (5%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + + M V ++W R DLRI KAL A S + + VF EQ S QS FI Sbjct: 7 RKGSVM-VSVMWFRRDLRIDVQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRD 120 S+L +K L +GI + D + + Q T +++N RD Sbjct: 64 T-SVLAFRKLLKCEGIDLYL----MYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRD 118 Query: 121 KLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + + + I L I+N + Q YKV+TP+ + + ++ Sbjct: 119 QKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELS 178 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 L + + + A L +F ++++ Y RD PA Sbjct: 179 QGRWLNLETPDDVLRTVESIKDEKYQDV--ATFDEASKQLNRFIQDQLAAYHANRDFPAQ 236 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 GTS+LSP+L IG + R ++ +++ L G ++L EL WR+FY + YP Sbjct: 237 LGTSRLSPFLRIGAIGIRTVYHAVRQAPNSL------GQATFLKELAWRDFYNMVYVAYP 290 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +P +IEW + Q WK+G TG+PI+DAAM QL GWMHNRLRMI AS Sbjct: 291 DQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 349 Query: 360 FLVKDLLVDWRIGEEYFMS 378 FL KDLL DWR+GE+YF Sbjct: 350 FLTKDLLCDWRLGEQYFQQ 368 >gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica] Length = 429 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 19/360 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGISARQSHFIYAS 64 + + R DLRI DN +L AA + K++ VFI PEQ S F+ S Sbjct: 67 KIAVFIFRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLS 125 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L QV K L + G + + +N + L + ++ N Y V RD+ + Sbjct: 126 LSQVHKELVKIGSKLNFIKLAN----ADALTQLKKEVNFDAVYSNEDYSFYAVSRDQEVR 181 Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + +D ++ L+ + + + F + N + Sbjct: 182 SWCRENRVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDN 241 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 IP + F +P + + + EK+ Y Q ++ + + Sbjct: 242 FVSFDLNCEIPEQQIHTFYENNPKLAVTPGRSGGMANLKSFEKLVDYRAQHNMLDQETSR 301 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 SP+ G +S R+ + R + F + F + +L WRE Y + A P Sbjct: 302 S-SPHTKFGTVSVRETYWRGMDLFGE--------DFHVIRQLGWREMYLKVYAARPEWQK 352 Query: 304 GKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 G+ ++ +W+ D + Q W QG TGFPI+DA MR+LN G+ HNR RM AS L Sbjct: 353 GQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASVLT 412 >gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare] Length = 301 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 9/106 (8%) Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 LD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT++I Sbjct: 1 LDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWI 60 Query: 441 HAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAA 477 H P + +L NYPLPIV+ +A L++ + Sbjct: 61 HHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWEL 106 >gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329] Length = 338 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 107/257 (41%), Gaps = 5/257 (1%) Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 D+ RL + +P F H R F Y E Sbjct: 58 DIAHPIDAPSRLPPMPKDAQLPTLSSSCFDESALFSGGEWSGLAHCRRYFSSGLASSYKE 117 Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 R+ + +++ SP+L++G +SPR + LK+ + EL+WRE++ Sbjct: 118 TRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTNWIYFELLWREYF 175 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 Y I + Q WK G T + I++A M QLN G+M N Sbjct: 176 YWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQ-WKNGTTPYLIVNACMHQLNHTGYMSN 234 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R R + AS LV +L +DWR G +F +QL+D D+ SN G WQ+ A G D R FN Sbjct: 235 RGRQLVASCLVHELGLDWRYGAAHFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNL 293 Query: 412 TIQGKRFDPQGTFIRHW 428 Q + +DP FI W Sbjct: 294 EKQTQMYDPNHEFIERW 310 >gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 167 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 L+ VIC+ FDDSVLLPPGS+L +MYKV+TPF+ A I+ L Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRD 164 >gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica] Length = 168 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 1/163 (0%) Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 L A++ TGFP +DA + +L T G + + R+ A+FL K L VDWR GE Sbjct: 5 WWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHGE 64 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 ++F L+D D NNG WQ+ TG I+NP Q K+FD G +I+ WLP L Sbjct: 65 KFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFLA 124 Query: 434 NVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYY 475 V ++HA +LS +Y P+V++ KA ++L + Sbjct: 125 KVGPAHLHAWEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMFK 167 >gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii] Length = 647 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 26/229 (11%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------------------- 277 +++LSP+ ++G ++PR+ + ++ V Sbjct: 414 DSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPAPA 473 Query: 278 -AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 L R+F+ + + + + I + + W +D +L W G TG P + Sbjct: 474 ECDWLAMHLCIRDFWTYTVLKEGLATLDERGI-VGQPVSWRRDPEVLARWCSGRTGLPFV 532 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 DA MR+L GWM NR R AS L KDL DWR G E F LLD D+A N W + A Sbjct: 533 DANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVNYCNWNYFA 592 Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445 GND R F QG ++D WLPEL ++P + HAP S Sbjct: 593 GVGNDPRN--RRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS 639 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQW-----------RQHGISARQSHFIYASLLQ 67 R+ DN+AL +A ++DA +AV I P + ++ F+ L + Sbjct: 2 RLDDNEALTSAVRHADA-TLAVHILDPRDLLPRRPRSEGGLGVPKLGPPRAKFMLEGLNE 60 Query: 68 VQKSLSQKG 76 +++ L + G Sbjct: 61 LRRQLQELG 69 >gi|300712647|ref|YP_003738460.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3] gi|299126331|gb|ADJ16669.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3] Length = 196 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 MR L G+++ R+R + ASF L WRIG ++ L+D D A N QW G Sbjct: 1 MRALTETGFLNFRMRAMVASFFSYILKQWWRIGADFMYYHLIDADPAINYA--QWQMQCG 58 Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---- 455 RI+NP Q + DP G FIR ++PEL N+ T ++ P Sbjct: 59 LVGCHPNRIYNPRKQVRENDPAGEFIREYVPELQNLSTTFLERPEKTPLHVQEQSGVTIG 118 Query: 456 ------YPLPIVDHKKACHHTLNQY 474 YP PIVD ++ Q+ Sbjct: 119 DTSDAVYPYPIVDFEREATLAREQF 143 >gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101] Length = 251 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 15/259 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ +VW R DLR++D+ AL AC+ V+ VF+ + + + F+ +L Sbjct: 1 MACTVVWFRRDLRLSDHAALSEACNQ--GAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + L Q+G D E L + + E R R Sbjct: 59 ALDADLRQRGGRLLIR----CGDPAEQLLQVVQLSGADGVIAHTDSERLVGRVRDARVSR 114 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 G ++ ++ + +A+ + A R + P + Sbjct: 115 TLAAHRIPLRWVEPAGACGELMAYSGWSRQW----HQAMASPALPAPERVVVPP---PSS 167 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQ 244 + + +P + P G A + E Y + P+ + T+ Sbjct: 168 ALPDTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCEGSASRSYYWELSYPSAKVTTG 227 Query: 245 LSPYLSIGVLSPRQCWNRL 263 LSPYL GV+SPRQC RL Sbjct: 228 LSPYLKFGVISPRQCLQRL 246 >gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 273 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 5/216 (2%) Query: 215 ALHILRKFCKEKVYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 F + Y E R+ + +++LS +L+ G LS R+ +++ + I+ Sbjct: 62 NHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQR--FEQTIE 119 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + EL+WREF+ L Y + I K D W +G TG+ Sbjct: 120 KNDSTYWVYFELLWREFFHWLQCKYGAKWFRFSGI-QGRKPTTCHDPETFSRWCKGETGY 178 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 I+DA MRQL G+M NR R + AS V +L DWR G +F QL+D D+ SN G W Sbjct: 179 RIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWL 238 Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429 + A G+D + R FN Q + +DP G F + WL Sbjct: 239 YLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273 >gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa] Length = 154 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 9/125 (7%) Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 VK LL+ W+ G +YF LLD DL S+ GWQ+ + + D R+ +P IQG ++D Sbjct: 1 AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDS 60 Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH---HTL 471 +G ++R WLPEL +PT++IH P + +L NYP PI+D A + Sbjct: 61 EGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIIDIDLAREQLTQAI 120 Query: 472 NQYYA 476 + + Sbjct: 121 FKMWE 125 >gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407] Length = 893 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 1/162 (0%) Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 M + W ++ + ++ L+ W+ G TG +IDA+ R+L G+ NR R Sbjct: 452 MQKFTWFSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYTGFTSNRAR 511 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ++F K + +DWR G E++ L+D D+ SN G WQ+AA GND R NP Q Sbjct: 512 MVVSNFFAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIERDLNPVKQ 571 Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLN 455 +DP+G ++R WLPE+ + +++ P + S N Sbjct: 572 AFDYDPKGLYVRAWLPEVARLKELRHLFQPSAAPPSAVTSAN 613 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 29/191 (15%) Query: 11 LVWLRNDLRITDNKALYAACHN----SDAKVIAVFIATPEQW------------------ 48 + LR DLR+ DN+ L+ N + ++ +++ Q Sbjct: 24 IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83 Query: 49 ------RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-Q 101 ++ FI L V++SL G + + + Sbjct: 84 AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143 Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 RV+ ++ + E + + + I + + + + + Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHYYLWPNEKHFIAEYVPSIPVPFTISGVY 203 Query: 162 RKALIQNLVQA 172 + + Sbjct: 204 TDKPSNHAIVP 214 >gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group] Length = 298 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 19/296 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL +A D V+ VFI P Q ++ SL + + Sbjct: 8 VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL G + + ++E L T+L YN Y+ + RD ++K L Sbjct: 66 SLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122 Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I +SF+ +L P I + + + + + + ++ + A P + + G + Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182 Query: 190 PSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + G +NA +L +F + Y + Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYR 292 TS LSPYL G +S R+ + ++ + + + + ++ + RE+ R Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298 >gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 480 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 136/396 (34%), Gaps = 25/396 (6%) Query: 93 WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 L + + E + +R + + + + P Sbjct: 2 VLARLAKDSGARHVLAHTDSERLV----GRVRDARVNRHLQQQGIELEWIEPAGASGKLQ 57 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + A+ LV R + + P P + + Sbjct: 58 PYSDWNRQWHGAMAAPLVPEPQRVV----VPEQCPDAPVPSLKDLGLISDGKPIPKAGTD 113 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + R Y + P+ + TS LSPYL GV+SPRQC RL + Sbjct: 114 AALGRLDRFLEGSDSRTYYWELSYPSAKVTSGLSPYLKFGVVSPRQCLQRLTAAGLRAKE 173 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWK 327 + +L R + + + + L +AWK Sbjct: 174 NADRSRLRSIQQLFSRLRWGCSIHQRFRYLPQLELRSLWSAFDQESALSAQQIELYEAWK 233 Query: 328 QGYTGFPIIDAAMRQLNTIG---WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 +G TGFPI+DAA L G ++ R R I ASFL +DWR G +FM L+DGD Sbjct: 234 EGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRYGALHFMRHLIDGD 293 Query: 385 LASNNGGWQWAASTGNDSVP-YFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHA 442 ++ W A + I++P R DP G FIR WLP+L + + Sbjct: 294 CPIDHYQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRRWLPQLERLTNDQLGE 353 Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 P ++ +YP P++++++A + + Sbjct: 354 PPAFA-------DYPAPVLNYEEARQARMEALSNTR 382 >gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies] Length = 259 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH P Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476 +L NYPLPIV+ A L++ + Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102 >gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies] gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies] gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies] gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies] gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies] Length = 259 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH P Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476 +L NYPLPIV+ A L++ + Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102 >gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies] gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies] gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies] gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies] gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies] gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies] gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies] gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies] gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies] gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies] gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies] gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies] gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies] gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies] gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies] gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies] gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies] gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies] gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies] gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies] gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies] gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies] gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies] gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies] gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies] gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies] gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies] gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies] gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies] gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies] gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies] gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies] gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies] gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies] gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies] gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies] gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies] gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies] gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies] Length = 259 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH P Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476 +L NYPLPIV+ A L++ + Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102 >gi|332093769|gb|EGI98823.1| deoxyribodipyrimidine photo-lyase domain protein [Shigella boydii 5216-82] Length = 78 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 50/73 (68%) Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466 RIFNP QG++FD +G FIR WLPEL +VP + +H P W K + L+YP PIV+HK+A Sbjct: 4 RIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEA 63 Query: 467 CHHTLNQYYAAKK 479 TL Y AA+K Sbjct: 64 RVQTLAAYEAARK 76 >gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies] gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies] gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies] gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies] gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies] gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies] gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies] Length = 259 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443 DL + GWQ+ + D RI NP +G +FDP G ++R WLPEL +PT++IH P Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60 Query: 444 HSWL------DKNDLSLNYPLPIVDHKKACHH---TLNQYYA 476 +L NYPLPIV+ A L++ + Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQ 102 >gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis] gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis] Length = 526 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 117/336 (34%), Gaps = 37/336 (11%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL +A + V+ V+ P + + ++ F+ Sbjct: 190 AIVWFRNDLRVHDNEALSSANKEA-LSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLEC 248 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G E L L+ +++ E+ ++ ++ Sbjct: 249 VANLRANLRERGSDLVVR----IGRPEEVLVELAKSIGADALYAHQEVSHEEIATEEKIK 304 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----------- 173 L+ + F L L LQ + +Q L Sbjct: 305 SSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQLKGL 364 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE- 232 V ++ + P F A++ GE AL L++F E + Sbjct: 365 PTRGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVECREQPNKL 424 Query: 233 -----QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----------KSG 277 + + ++SP+L++G LSPR + LK+ + + G Sbjct: 425 GKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSSGADSGQGG 484 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 EL+WR+F+R + Y S + P T Sbjct: 485 LNWLKFELLWRDFFRFITKKYGSAKKQQDASPVTAC 520 >gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii] Length = 345 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 28/312 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL AA S VI V+ P+ + + ++ F+ Sbjct: 22 SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G + +E L + L+ +++ E+ + + Sbjct: 81 VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136 Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175 L+ + + F L L N+ KV +A + Q Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQ 233 P Q GE ++ Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286 I +S++SP+L++G LSPR+ + LK+ SG + EL+ Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQWLVFELL 316 Query: 287 WREFYRHLMAFY 298 WR+F+R + + Sbjct: 317 WRDFFRFVTKKH 328 >gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii] Length = 345 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 28/312 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL AA S VI V+ P+ + + ++ F+ Sbjct: 22 SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L ++G + +E L + L+ +++ E+ + + Sbjct: 81 VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136 Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175 L+ + + F L L N+ KV +A + Q Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQ 233 P Q GE ++ Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286 I +S++SP+L++G LSPR+ + LK+ SG + EL+ Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQWLVFELL 316 Query: 287 WREFYRHLMAFY 298 WR+F+R + + Sbjct: 317 WRDFFRFVTKKH 328 >gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 571 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 20/233 (8%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAF 297 +S+LS L++G LSPRQ + +K E L G +N L R+++ Sbjct: 326 SHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSPDGIAWIINHLEIRDYFLFESFL 385 Query: 298 YPSVCMGKPFIPWTEKIEW--------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 T + W G T P++DA M +L G++ Sbjct: 386 NGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWTSGKTNLPLVDAGMNELIATGYI 445 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 NR+R S L KDL +DWR+G E+F L D D+A+N G WQ+ A G D R F Sbjct: 446 SNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAANYGNWQYFAGVGGDPKN--RHF 503 Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIV 461 Q R+D +G F+R W+ L + + + P ++ D+ PIV Sbjct: 504 RTVSQAWRYDARGVFVRKWIDRLKDEDDIEVLLRPWAFRDEW-------APIV 549 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 30/224 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----------------- 53 L+W R DLR+ DN+ LY ++ AK+ ++F+ + Sbjct: 6 LIWHRRDLRLADNE-LY----SNAAKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVN 60 Query: 54 -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + ++ ++ +L G + +E + S + +V ++ ++ Sbjct: 61 NGPHFTRRLLEAVHSLRNNLRDLGGDLIVRH----GNPLEIIPSLAKELQVEEVAWSEVP 116 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 E + + L++ L + + + L + + Sbjct: 117 GYYEWVQSEKLKQILMDGADEGYAHRRKIC---TSVTTTLMHPDDLPKDQPTWERLARPK 173 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 + R PA + I P +G + + Sbjct: 174 EKRKKQKPAATASVAHEERYTTHTSFNSIVDISPPRFVGMPSIM 217 >gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55] Length = 160 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ HLVWLR DLRI DN AL AAC + A+V+A++IATP QWR+H ++ RQ+ FI + L Sbjct: 1 MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +L+++GI + +F S+E L +C Q +V+ LFYN QYE NE +RD +E Sbjct: 61 SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 L+ VIC+ FDDSVLLPPGS++ + +MYKV+TPF+ A I+ Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160 >gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus] Length = 359 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 125/360 (34%), Gaps = 21/360 (5%) Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQKG 76 LR+ DN L AA +S+A + V+I I A + +F+ SL + K+L Q G Sbjct: 3 LRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLG 61 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKS 135 Q + L + + +T++ + + E + +++ S Sbjct: 62 SCLLVIQ----GEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFS 117 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 L IL+ + ++ L ++ V A P Sbjct: 118 LVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPGLA 177 Query: 196 FFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +D G Q L + + T+ Sbjct: 178 ECYRVPLPVDLKISPESLSPWRGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTT 237 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPY S+G LS R + RL + S +L+WREF+ + +A Sbjct: 238 GLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFF-YTVASATPNFT 295 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 P +I W KD+ L WK TGFP IDA M QL GW+H+ R A FL + Sbjct: 296 QMAGNPICLQICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 355 >gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3] Length = 406 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 115/402 (28%), Positives = 179/402 (44%), Gaps = 33/402 (8%) Query: 12 VWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 W RNDLR+ DN LY + N+ AK+ AV++ + WR H S + FI Sbjct: 2 HWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMG 61 Query: 64 SLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFYNRQYE 113 +L +Q+SL++ I + SN + +E+ C+ + N +Y+ Sbjct: 62 ALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQ 121 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLV 170 +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K + N Sbjct: 122 TDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYK 181 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------ILRKF 222 ++ + I + F P + L+ F Sbjct: 182 KSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKDF 241 Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGA 278 K Y ++D+ + GTS LS Y++ G +S R N+ + +K S Sbjct: 242 LGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSST 301 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 +++ E+ WR+FYRH M +P MG P+ T I+W + + W G TG PI+DA Sbjct: 302 QNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDA 361 Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 MR+L G+++NR RMITASFL K+LL+DWR G L Sbjct: 362 IMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGGTLVYETL 403 >gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus] Length = 140 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 2/138 (1%) Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W +D+ L WK TGFP IDA M QL GW+H+ R A FL + DL + W G Sbjct: 1 RWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGM 60 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433 + F LLD D + N G W W +++ Y RIF P G+R DP+G +IR +LP L Sbjct: 61 KVFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILK 119 Query: 434 NVPTQYIHAPHSWLDKND 451 N P++YI+ P + ++ Sbjct: 120 NFPSKYIYEPWTASEEEQ 137 >gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 959 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q +++SPY+++G LSPR+ + L+E + + L L R+++ + Sbjct: 616 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 675 Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + +W D ++Q W G TG P DAAMR+L G++ + Sbjct: 676 GLRFGDRLFFSYGPHPEHTDDVPDWRHDRKVVQRWCNGLTGIPFADAAMRELVGTGFVAH 735 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN----DSVPYFR 407 R A L + DWR+G E+ LD D G +A S G P Sbjct: 736 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAYSCGLILDDFGEPVRS 793 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 ++ + D G +++ WLP+L+ VP Y+H PH ++ L NYP P+ Sbjct: 794 VY---YLAHQHDQTGIYVKKWLPQLSKVPPVYVHRPHVLTERMQAMHGVYLGKNYPYPL 849 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 19/132 (14%) Query: 17 DLRITDNKALY-------AACHNSDAK--VIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN L AA + VI V + + Q + S +++ F Sbjct: 264 DLRVHDNHLLAFASGCARAAAIKTGGPVSVIGVCVLDYRTFAQPSVVGGFFRQSPQRAQF 323 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ ++ L E + ++ + QY +E R Sbjct: 324 LLDTVAALRVKLE---GTLHVPLLVRCGRPEEHVPRLAVELGAMHVLMTTQYAPHERRVQ 380 Query: 121 KLLEKRLQHRVI 132 +L+ +RL+ Sbjct: 381 ELMVRRLRAGTW 392 >gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin] gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin] Length = 934 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q +++SPY+++G LSPR+ + L+E + + L L R+++ + Sbjct: 591 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 650 Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + EW D ++Q W G TG P DAAMR+L G++ Sbjct: 651 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 710 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408 R A L + DWR+G E+ LD D G +A S G D R Sbjct: 711 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAHSCGLMLDDFGEPVR- 767 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 N + D G +++ WLP+L+ VP YIH PH ++ L NYP P+ Sbjct: 768 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 824 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 19/132 (14%) Query: 17 DLRITDNKALY-------AACHNSDA--KVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L AA VI V + + Q S +++ F Sbjct: 239 DLRVHDNQLLAFASVCTKAAAEEVGGPVPVIGVCVLDYRTFAQPSAVGGFFRQSPQRAQF 298 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ T + QY +E R Sbjct: 299 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGATVVLMTTQYAPHERRVQ 355 Query: 121 KLLEKRLQHRVI 132 L+ +RL+ Sbjct: 356 ALMVRRLRAGTW 367 >gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5] gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5] Length = 932 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q +++SPY+++G LSPR+ + L+E + + L L R+++ + Sbjct: 589 MYSQKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWM 648 Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + EW D ++Q W G TG P DAAMR+L G++ Sbjct: 649 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 708 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408 R A L + DWR+G E+ LD D G +A S G D R Sbjct: 709 EGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 765 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 N + D G +++ WLP+L+ VP YIH PH ++ L NYP P+ Sbjct: 766 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 822 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 19/132 (14%) Query: 17 DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L A S VI V + + Q S +++ F Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ + QY +E R Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353 Query: 121 KLLEKRLQHRVI 132 L+ +RL+ Sbjct: 354 ALMVRRLRAGTW 365 >gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 932 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q +++SPY+++G LSPR+ + L+E + + L L R+++ + Sbjct: 589 MYSQKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWM 648 Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + EW D ++Q W G TG P DAAMR+L G++ Sbjct: 649 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 708 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408 R A L + DWR+G E+ LD D G +A S G D R Sbjct: 709 EGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 765 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 N + D G +++ WLP+L+ VP YIH PH ++ L NYP P+ Sbjct: 766 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL 822 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 19/132 (14%) Query: 17 DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L A S VI V + + Q S +++ F Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ + QY +E R Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353 Query: 121 KLLEKRLQHRVI 132 L+ +RL+ Sbjct: 354 ALMVRRLRAGTW 365 >gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti] gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti] Length = 321 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 7/195 (3%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS R + +L + + + S +L+WREF+ P+ Sbjct: 131 LSPYLRFGCLSTRLFYYQLTDLYKKIKKAC--PPLSLYGQLLWREFFYCAATKNPNFDKM 188 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W++++ L W G TGFP IDA M QL GW+H+ R A FL + Sbjct: 189 -AGNPICVQISWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 247 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + G + F LLD D + N G W S + +F + P G++ DP G Sbjct: 248 DLWISCEEGMKVFEELLLDADWSVNAGMWL---SCSSFFQQFFHCYCPVKFGRKADPNGD 304 Query: 424 FIRHWLPELNNVPTQ 438 +IR +LP L V + Sbjct: 305 YIRRYLPVLKEVNKK 319 >gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 235 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 88/220 (40%), Gaps = 12/220 (5%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF-YRHLMAFYPSV 301 SQLS + G LS R+ ++E A + Sbjct: 25 SQLSAHFCFGTLSVREVCRNIRESGQGGAAWLDGPARRAYCRRALPFSDGLLELTMKGGR 84 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 E ++ L W++G TG PIIDAAMR LN G +H LR + A FL Sbjct: 85 AALHWLQLPKMIREPDRGGEALMRWQEGRTGVPIIDAAMRALNGGGSLHPALRRLCADFL 144 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L + GE F ++L D + A N+ WQ G R+ NP + DP Sbjct: 145 TGRLNISAAHGEACFAARLTDYEYAVNHHNWQ---QVG-------RLNNPFAESLNLDPD 194 Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461 G FIR LPEL ++P +H PH + + YP P V Sbjct: 195 GRFIRRHLPELAHLPASALHTPHLAGSDVE-TNGYPPPCV 233 >gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 933 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHL 294 Q +++SPY+++G LSPR+ + L+E + + L L R+++ + Sbjct: 590 MYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWM 649 Query: 295 MAFYPSVCMGKPFIPW---TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + EW D ++Q W G TG P DAAMR+L G++ Sbjct: 650 GLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQ 709 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN---DSVPYFRI 408 R A L + DWR+G E+ LD D G +A S G D R Sbjct: 710 EGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGN--YAYSCGLMLDDFGEPVR- 766 Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460 N + D G +++ WLP+L+ VP YIH PH ++ L NYP P+ Sbjct: 767 -NVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGRNYPYPL 823 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 19/132 (14%) Query: 17 DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60 DLR+ DN+ L A VI V + + Q S +++ F Sbjct: 238 DLRVHDNQLLAFASVCARAAAAEAGGPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 297 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + ++ +++ L E + ++ R + QY +E R Sbjct: 298 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELRAMDVLMTTQYAPHERRVQ 354 Query: 121 KLLEKRLQHRVI 132 L+ +RLQ Sbjct: 355 ALMVRRLQAGTW 366 >gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein [Physcomitrella patens subsp. patens] gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein [Physcomitrella patens subsp. patens] Length = 413 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 67/257 (26%), Gaps = 12/257 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + +VW R DLR+ DN AL AA V+ VF+ +P + Q ++ SL Sbjct: 3 ACTIVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTH 60 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ SL + G + D + L T++F N R Sbjct: 61 LELSLKKLGSPLILRRSR---DMLSVLLEIAEAPGATQVFSNHLSVEGYRFDPDGDYVRR 117 Query: 128 QHRVICKSFDDSVLLPPGSIL-------NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + ++ V P + Y A + L + Sbjct: 118 WIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQASLAEMWERD 177 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A ++ + +RD + Sbjct: 178 AAMKAALANGLEEGLGETVEVAGTGGPEHERMDVPRVMVHMQRDADMSCNSSRRDQLVPE 237 Query: 241 GTSQLSPYLSIGVLSPR 257 + + R Sbjct: 238 IVPNQFHIRAHESIMNR 254 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%) Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468 G RFDP G ++R W+PEL +P +++H P +L NYP PIV+ A Sbjct: 105 GYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARE 164 Query: 469 H---TLNQYYA 476 +L + + Sbjct: 165 RLQASLAEMWE 175 >gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus] Length = 237 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 4/193 (2%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + L E ++ L S +L+WREF+ P+ Sbjct: 48 PTGLSPYLRFGCLSCRVFYYNLWELYMKLRRSSSPPL-SLFGQLLWREFFYTAGTNNPNF 106 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+ + L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 107 DHME-GNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 165 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 + DL + W G + F LLD D + N G W W + + +F + P G+R DP Sbjct: 166 TRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDP 224 Query: 421 QGTFIRHWLPELN 433 G +IR ++P+L Sbjct: 225 SGDYIRRYIPKLK 237 >gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198] Length = 158 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 95/152 (62%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 VHLVW R+DLR+TDNKAL+ AC + A+V A+F TPEQW+ H ++ FI+ +LL Sbjct: 5 PVHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLD 64 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + SL++ I + ++ + + YC Q VT LF+N QY +NE RRDK + + L Sbjct: 65 LSTSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELL 124 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 +++ ++ D+V +PPG+++ +M+KV+ Sbjct: 125 KNKTTVYTYHDNVFIPPGNVVTQQGEMFKVFY 156 >gi|213647828|ref|ZP_03377881.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 92 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 42/92 (45%), Positives = 65/92 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 +Q +L++KGI +H+ ++F+ SIE + + C Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVC 92 >gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 448 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 110 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSV 168 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL +G + ++ + + +E R ++ + K Sbjct: 169 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVSK 224 Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180 + + V K F S L + M Y FR+A+ ++ ++ A VP Sbjct: 225 AIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVP 284 Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P P A GE AL L+KF E + Sbjct: 285 MKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPNK 344 Query: 233 ------QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276 Q I + ++SP+L+ G LSPR + LK+ D + Sbjct: 345 AVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDA 404 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 G + EL+WR+F+R + Y S P T Sbjct: 405 GTNWLMFELLWRDFFRFVTKKYSSAQKTSEVAPATGCTP 443 >gi|254251923|ref|ZP_04945241.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158] gi|124894532|gb|EAY68412.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158] Length = 93 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DK 449 A G D+ PYFR+FNP QG++ P G +R W+PEL V +HA Sbjct: 2 AGCGADAAPYFRVFNPVAQGRKLGPSGAHVRRWVPELARVDDAAVHARWDASPLTLAAAG 61 Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 L + YP P+VDH A L+ + K+ Sbjct: 62 VRLGVVYPAPLVDHDAARRRALDAFATLPKR 92 >gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor] Length = 447 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 114/327 (34%), Gaps = 39/327 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 111 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 169 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL +G + ++ + + +EVR ++ ++K Sbjct: 170 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 225 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180 ++ I + L L L+ + ++ +++A VP Sbjct: 226 AVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 285 Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQ------NALHILRKFCKEK 226 + P P A+ GE + K Sbjct: 286 MKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFAVECSMQPNK 345 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276 Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 346 ADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTPKNNDGTSDA 405 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303 G + EL+WR+F+R + Y SV Sbjct: 406 GTNWLMFELLWRDFFRFITKKYSSVQK 432 >gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays] gi|194690696|gb|ACF79432.1| unknown [Zea mays] gi|194701496|gb|ACF84832.1| unknown [Zea mays] Length = 446 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL +G + ++ + + +EVR ++ ++K Sbjct: 169 ADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 224 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180 ++ I + L L L+ + ++ +++A VP Sbjct: 225 AVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 284 Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFCKEK 226 + P P+ P P K Sbjct: 285 MKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNK 344 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKS 276 V Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 345 VDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDA 404 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303 G + EL+WR+F+R + Y SV Sbjct: 405 GTNWLMFELLWRDFFRFITKKYSSVQK 431 >gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma proteobacterium HTCC2148] Length = 227 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 4/188 (2%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 +S LSP+L+ G L+ + L + + L + +EL+WREF+ S Sbjct: 22 YSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSELLWREFFYRREVEDSS 79 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K+ D W G T +P+++A M QL GWM NR R I AS Sbjct: 80 SLFRAKGTARERKL-VTFDPRGFARWCAGATDYPLVNALMHQLVESGWMSNRGRQIAASC 138 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 LV ++ VDWR G +F LLD D ASN G WQ+ A G D R F+ Q ++FDP Sbjct: 139 LVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG-GRHFDLVKQTRQFDP 197 Query: 421 QGTFIRHW 428 +G F + W Sbjct: 198 EGEFTQRW 205 >gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis] gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis] Length = 458 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 119/322 (36%), Gaps = 32/322 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+ L +A + S + V+ V+ P ++ + ++ F+ S Sbjct: 128 SIVWFRNDLRVHDNECLNSANNESMS-VLPVYCFDPREYGKSSSGFDKTGPYRASFLIES 186 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++K+L +G L ++ +++ +EV+ + +E Sbjct: 187 VTDLRKNLQDRGSDLVVR----VGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIE 242 Query: 125 KRLQHRVICKSFDDSVLLPPGSIL---------NHALQMYKVYTPFRKALIQNLVQADLR 175 ++ + + L L N+ KV+ + I L Q + Sbjct: 243 AAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGK 302 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE--- 232 P A GE AL L+KF E + Sbjct: 303 PSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPPKGGS 362 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWL 282 Q I + ++SP+L++G +SPR ++ LK+ + D P +G + Sbjct: 363 QDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGMNWLM 422 Query: 283 NELIWREFYRHLMAFYPSVCMG 304 EL+WR+F+R + Y S Sbjct: 423 FELLWRDFFRFITKKYSSPKKQ 444 >gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa] gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa] Length = 424 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 108/317 (34%), Gaps = 24/317 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A ++S + V+ V+ P + + +++F+ S+ Sbjct: 88 IVWFRNDLRVHDNECLNSASNDSMS-VLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 146 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ + +E+ Sbjct: 147 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEDKIEE 202 Query: 126 RLQHRVICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 ++ + + L N+ KV + ++ L + Sbjct: 203 VMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDELKGLP 262 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + GE AL L+KF E + + Sbjct: 263 SRGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAECQAQPPKGTNG 322 Query: 237 PAI-----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + ++SP+L++G +SPR ++ LK+ + + + Sbjct: 323 SHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGGGGGSGSPDTG 382 Query: 292 RHLMAFYPSVCMGKPFI 308 + + F FI Sbjct: 383 MNWLMFELLWRDFFRFI 399 >gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group] Length = 451 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 113 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 171 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L +G + +F + + +E R ++ + K Sbjct: 172 ADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSK 227 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180 ++ I K F S L + M Y FR+A+ ++ ++ A VP Sbjct: 228 AVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKCVP 287 Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P P A+ GE AL L+KF E + Sbjct: 288 MKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQPNK 347 Query: 233 -----QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276 RD + ++SP+L+ G LSPR + LK+ + + Sbjct: 348 GDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGDGTSDA 407 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 G + EL+WR+F+R + Y S P T Sbjct: 408 GTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCTP 446 >gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group] gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza sativa Japonica Group] gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group] gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group] Length = 459 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 39/339 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ L+AA S + ++ VF+ P + + ++ F+ S+ Sbjct: 121 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 179 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++ L +G + +F + + +E R ++ + K Sbjct: 180 ADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSK 235 Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180 ++ I K F S L + M Y FR+A+ ++ ++ A VP Sbjct: 236 AVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKCVP 295 Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + P P A+ GE AL L+KF E + Sbjct: 296 MKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASECCMQPNK 355 Query: 233 -----QRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEE----------FVDLLIKPKS 276 RD + ++SP+L+ G LSPR + LK+ + + Sbjct: 356 GDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGDGTSDA 415 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 G + EL+WR+F+R + Y S P T Sbjct: 416 GTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCTP 454 >gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region; AltName: Full=URF1 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC 6716) gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.] Length = 284 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 113/286 (39%), Gaps = 8/286 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +HL W R DLR+ DN LYAA V+ VF P + ++A + ++ L Sbjct: 4 PLHLFWHRRDLRLADNLGLYAA-RQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQA 62 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++++ Q+G Q D + + + T + ++ E RD+++ L Sbjct: 63 LKEAYQQRGGCLLMVQ----GDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATL 118 Query: 128 QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 I LL P S + Q Y VYTPF + A + P A Sbjct: 119 NDLGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEAT 178 Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + +P D F + + GE A L F + +Y Y EQR+ P GT+ L Sbjct: 179 EIASIPLPSTHDLGFDWSGELILAPGEAAAAQQLAHFSQHAIYEYGEQRNYPGRPGTALL 238 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREF 290 SP L GV+ R W + ++ +W EL WREF Sbjct: 239 SPALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284 >gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays] Length = 446 Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 39/327 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65 LVW R DLR+ D++ +AA S + ++ VF+ P + + +++F+ S+ Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +++SL +G + ++ + + +EVR ++ ++K Sbjct: 169 ADLRRSLRARGGDLVVRVGM----PEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQK 224 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-----NLVQADLRSLPVP 180 ++ I + L L L+ + ++ +++A VP Sbjct: 225 AVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVP 284 Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFCKEK 226 + P P+ P P K Sbjct: 285 MKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNK 344 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKS 276 V Q I + ++SP+L+ G LSPR + LK+ + + Sbjct: 345 VDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDA 404 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM 303 G + EL+WR+F+R + Y SV Sbjct: 405 GTNWLMFELLWRDFFRFITKKYSSVQK 431 >gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays] gi|219888051|gb|ACL54400.1| unknown [Zea mays] Length = 421 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 132/386 (34%), Gaps = 28/386 (7%) Query: 12 VWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQH---------GISARQS 58 +W R LR+ DN AL + A++ VF+ P R + Sbjct: 12 MWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARI 71 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ SL + + + + DD + + + + KL + E + Sbjct: 72 RFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALA 129 Query: 119 RDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 RDK + I S P I + + Y F + A Sbjct: 130 RDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAGEPPAPAMEEY 189 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ---------NALHILRKFCKEKV 227 +P + TG +P + + I + K K Sbjct: 190 SELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKESLQNKEWVAKF 249 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 T+ LSPYL G LS R ++ +++ + K S +L+W Sbjct: 250 EKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKPPV-SLTGQLLW 308 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 R+F+ + P+ K ++I W+++ L AW+ G TG+P IDA M QL G Sbjct: 309 RDFFYTVSYGTPNFDRMK-GNKICKQIPWSENEDLFVAWRDGQTGYPWIDAIMIQLRNWG 367 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGE 373 WMH+ R A FL + + GE Sbjct: 368 WMHHLARHSVACFLTRGDMCCRCEGE 393 >gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 166 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 1/165 (0%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 + GWQ+ T DS + RI NP +G +FDP G ++R WLPEL Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166 >gi|62859891|ref|NP_001017311.1| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis] Length = 241 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D + V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 + +L + + + + ++TK Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWKITK 95 >gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927] gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei] Length = 848 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 14/252 (5%) Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + Q S+LSPYLS G LSPR+ + L+ + L Sbjct: 507 MTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQY 566 Query: 281 WLN--ELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 L R+++ + Y + + + +W D ++Q W G TG P Sbjct: 567 REALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPF 626 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DAAMR+L G++ + R L + DWR+G E+ +D D G + Sbjct: 627 ADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYY 686 Query: 396 AS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449 + +D R N D G +++ WLP+L+ +P YIH PH ++ Sbjct: 687 SELVRDDFGETVR--NIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMH 744 Query: 450 -NDLSLNYPLPI 460 L NYP P+ Sbjct: 745 GVQLGKNYPYPL 756 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%) Query: 16 NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN A A VIAV + + Q S ++ F + Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++ L + I + + ++ +F QY +E + Sbjct: 274 LAALRYKLERELRIPLLVR----CGRPEDHIPRLVVECGAIDVFLTTQYTPHEKEVHNDI 329 Query: 124 EKRLQHRVI 132 + + R Sbjct: 330 VEAITQRRW 338 >gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 454 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 116/325 (35%), Gaps = 36/325 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A + S + + V+ P + + ++ F+ S+ Sbjct: 121 IVWFRNDLRVHDNECLNSASNESMSM-LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 179 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++++L ++G L ++ +R+ +EV+ ++ +E Sbjct: 180 SDLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 235 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------- 172 ++ + + L L ++ K ++ L Sbjct: 236 AMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 295 Query: 173 ---DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 D+ + +P++ G + +P+ L C+ + Sbjct: 296 ARGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKFAAECQAQPPK 355 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----------LLIKPKSGAF 279 I + ++SP+L++G LSPR ++ +K+ + +G Sbjct: 356 GAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSGQSDTGMN 415 Query: 280 SWLNELIWREFYRHLMAFYPSVCMG 304 + EL+WR+F+R + Y S Sbjct: 416 WLMFELMWRDFFRFITKKYSSATKQ 440 >gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972] Length = 848 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 14/252 (5%) Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + Q S+LSPYLS G LSPR+ + L+ + L Sbjct: 507 MTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQY 566 Query: 281 WLN--ELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335 L R+++ + Y + + + +W D ++Q W G TG P Sbjct: 567 REALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPF 626 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 DAAMR+L G++ + R L + DWR+G E+ +D D G + Sbjct: 627 ADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYY 686 Query: 396 AS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449 + +D R N D G +++ WLP+L+ +P YIH PH ++ Sbjct: 687 SELVRDDFGETVR--NIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMH 744 Query: 450 -NDLSLNYPLPI 460 L NYP P+ Sbjct: 745 GVQLGKNYPYPL 756 Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%) Query: 16 NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN A A VIAV + + Q S ++ F + Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L ++ L + I + + ++ +F QY +E + Sbjct: 274 LAALRYKLERELRIPLLVR----CGRPEDHIPRLVVECGAIDVFLTTQYAPHEKEVHNDI 329 Query: 124 EKRLQHRVI 132 + + R Sbjct: 330 VEAINQRRW 338 >gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp. patens] Length = 435 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64 +VW RNDLR+ DN+AL +A +S ++ V+ P + + + F++ Sbjct: 56 SIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFEC 114 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 + ++ SL ++G E L L+ ++ Sbjct: 115 VANLRSSLRERGSDLIVR----IGKPEEVLLDLAKSVGAESLYAHQ 156 >gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T] gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T] Length = 515 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +S+ SP+L+ G LS R L+ ++ P G++ EL+WR+++R L Sbjct: 290 DFSSKFSPWLAQGALSARVALAALRRHEIEQG--PSDGSYWLWFELLWRDYFRLLHLQQG 347 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + W+ G TG P IDA MR+L GW+ NR+R I AS Sbjct: 348 RRLYRARGLNEGAAQPAHDAAAFAA-WRVGGTGHPFIDAGMRELAATGWLSNRMRQIVAS 406 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419 +L+ DL DWR G +F +QL+D D+ SN G W + A G D R F+P Q +D Sbjct: 407 YLIHDLGCDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPRG-GRRFDPDRQAAMYD 465 Query: 420 PQGTFIRHW 428 G + W Sbjct: 466 ADGAYRALW 474 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63 V + W RNDLR+ DN AL AC ++ +++ V+ P +W + F+ A Sbjct: 5 VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEA 63 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNF 87 +L + +L +G + Sbjct: 64 ALGDLDAALRARGSALLQLNGAPR 87 >gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana] Length = 447 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 32/315 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185 + + + L L ++ K +Q L + + ++ Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232 G V +IP D G+ + K Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQXRXSKGNQKGG 354 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ G + EL Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414 Query: 286 IWREFYRHLMAFYPS 300 +WR+F+R + Y S Sbjct: 415 LWRDFFRFITKKYSS 429 >gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio] Length = 418 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLS 453 Y RIF P G+R DPQG ++R +LP L N P+QYI+ P + + Sbjct: 261 TFYHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIG 320 Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478 +YP PIV H +A L + Sbjct: 321 KDYPRPIVSHIEASQRNLALMRQVR 345 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 19/276 (6%) Query: 7 MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYAS 64 MS + R LR+ DN +L A +S A + V++ + + A + F+ S Sbjct: 1 MSHRTIHLFRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQS 59 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L + L G + L Q +T++ Y+ + E R DK ++ Sbjct: 60 LEDLDTRLQAIGSRLFVL----CGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQ 115 Query: 125 KRLQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 Q + S I+ + ++ L + + + V Sbjct: 116 TVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIED 175 Query: 184 LTGPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVE 232 VTP ++ R + P + ++P GE +A + + Sbjct: 176 FQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPR 235 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + T+ LSPYLS+G LS R +++ F Sbjct: 236 TIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTRIFC 271 >gi|318041064|ref|ZP_07973020.1| DNA photolyase, FAD-binding protein [Synechococcus sp. CB0101] Length = 314 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%) Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMR 341 + L W + P + + + P E + AW++G TGFPI+DAA R Sbjct: 5 SRLRWGCAIHQRFRYLPQLELIALWSPLDTHCELSAQQEELYAAWREGRTGFPIVDAAAR 64 Query: 342 QLNTIG---WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 L G ++ R R I ASFL +DWR G ++M L+DGD ++ W A Sbjct: 65 CLQAEGGWLELNFRSRAIYASFLSNLCGIDWRFGALHYMRHLIDGDCPIDHYQWAMQAGV 124 Query: 399 GNDS-VPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456 + RI++P R DP G FIR WLPEL + + P + +Y Sbjct: 125 TYHGTKAWTRIYHPGQVAVDRCDPHGLFIRRWLPELRGLTNDQLGTPPAMA-------DY 177 Query: 457 PLPIVDHKKACHHTLNQYYAAK 478 P P++D++ + L + Sbjct: 178 PAPVLDYETSRRLRLEALEQQR 199 >gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica] Length = 168 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL +D V V+I P + + F+ L Sbjct: 1 MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 + +L + + + + + K Sbjct: 60 EDLDANLRKLNSRLFVIR----GQPADVFPRLFKEWSIAK 95 >gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545] Length = 502 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 110/264 (41%), Gaps = 41/264 (15%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 TS++SPYL G +SPR ++ LK + + + + REF +A +P + Sbjct: 229 TSRMSPYLRFGQISPRAMYHDLKRADGKRVS------RLFWHRVHRREFAYWQLANWPDM 282 Query: 302 CMGKPFIPWTEKIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + +W D +L+ W++G TGFP +DA MR+L T GWMH R Sbjct: 283 GTKSIRRHYDRRADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMRRLWTTGWMHQTER 342 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN---- 410 M+ A+FL L V W G +F L+D DLA N WQ A +G D +F+ Sbjct: 343 MLCATFLCDYLNVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLDQWD---VFSGSLA 399 Query: 411 PT--IQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKN---------DLSLN--Y 456 P + DP G I +PEL +P ++ H P D + Y Sbjct: 400 PDGSKPCRAHDPLGDAIATRVPELAGLPRGHLRHRPWEASDAVLETSGVVIRGAGEDGAY 459 Query: 457 PLPI------VDHKKACHHTLNQY 474 P + VD + Sbjct: 460 PERMLPGVGDVD-GAGREDARARM 482 >gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii] Length = 274 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 8/226 (3%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259 D ++P GE +AL L K + + + + ++ LSPYLS+G LS R Sbjct: 51 FDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSPYLSLGCLSVRTF 110 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 +++L + S +++WREF+ + + P+ + P +I+W D Sbjct: 111 YHQLSSVYAQSKNHSLPPL-SLQGQVLWREFFYTVASSTPNFTKME-GNPICLQIQWYHD 168 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378 L+ W+ TGFP IDA M QL GW+H+ R A FL + DL + W G + F Sbjct: 169 PEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 228 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 LLD D + N G W W +++ Y RIF P G+R DPQG + Sbjct: 229 LLLDADYSINAGNWMWLSASAFFHK-YTRIFCPVRFGRRTDPQGQY 273 >gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis] Length = 642 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 86/328 (26%), Gaps = 33/328 (10%) Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + +++ PA R F Y + G L + + Sbjct: 266 WVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYYNLREHYIRLCKGCSPPLSLFGQ 325 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 + +Y + + RQ P S Sbjct: 326 LLWREFFYTAATNNPNFDRMAGNPICVQVGVHAGRRQPV----TASSWASAGPCPRNPSG 381 Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +F + + G G P+ Sbjct: 382 SGGGGGGLGQVTWWSFLLPLTPPPDPGVSRSPDPLGPEPGGFGQVGGGSDGLPLDRRHHD 441 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGE----------------------EYFMSQ 379 G R A FL + L + F Sbjct: 442 PAEAGGLDPPPARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEEL 501 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439 LLD D + N G W W + + +F+ + P G+R DP G +IR ++P L + P +Y Sbjct: 502 LLDADWSVNAGSWMWLSCS-AFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRY 560 Query: 440 IHAPHSWLDK------NDLSLNYPLPIV 461 I+ P + + + ++YP P++ Sbjct: 561 IYEPWNAPEAVQKAANCVVGVDYPRPMI 588 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL A +D+ + V++ P + + F+ +L Sbjct: 1 MVVNSVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEAL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 + SL + + + Sbjct: 60 EDLDCSLKKLNSRLFVVR----GQPTDVFPRLLK 89 >gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase [Arabidopsis thaliana] gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana] gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana] gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana] gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana] Length = 447 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 32/315 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185 + + + L L ++ K +Q L + + ++ Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232 G V +IP D G+ + K Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 354 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ G + EL Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414 Query: 286 IWREFYRHLMAFYPS 300 +WR+F+R + Y S Sbjct: 415 LWRDFFRFITKKYSS 429 >gi|213022877|ref|ZP_03337324.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 84 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 38/81 (46%), Positives = 58/81 (71%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60 Query: 67 QVQKSLSQKGIVFQYHQCSNF 87 +Q +L++KGI +H+ ++F Sbjct: 61 ALQTALAEKGIPLLFHEVADF 81 >gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa] Length = 457 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 33/316 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A +N V+ V+ P + + +++F+ S+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ ++ +E+ Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241 Query: 126 RLQHRVICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 ++ + + L N+ KV + I+ L Q Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE---Q 233 P A + GE AL L KF E + Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAECQAQPPKGGSH 361 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----------EFVDLLIKPKSGAFSWL 282 I + ++SP+L++G +S R ++ LK+ P +G + Sbjct: 362 ESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGGSSSPGAGMNWLM 421 Query: 283 NELIWREFYRHLMAFY 298 EL+WR+F+R + Y Sbjct: 422 FELMWRDFFRFITKKY 437 >gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens] Length = 528 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 107/285 (37%), Gaps = 34/285 (11%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64 +VW RNDLR+ DN+AL +A +S ++ V+ P+ + + +++F+ Sbjct: 180 SIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLEC 238 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ SL ++G L L+ +++ E++ ++ + Sbjct: 239 VANLRSSLRERGSDLIVR----VGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEEKVA 294 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPV 179 LQ + I + L L LQ + +QN+ ++A + + Sbjct: 295 AALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQLKGL 354 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 PA P + +I P + +G L + + + +E R + Sbjct: 355 PACGNVKPGSIPSIEVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEARSQTS 414 Query: 239 I------------------QGTSQLSPYLSIGVLSPRQCWNRLKE 265 + ++SP+L++G LSPR+ + LK+ Sbjct: 415 NLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKK 459 >gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata] Length = 448 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 114/315 (36%), Gaps = 32/315 (10%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A V+ V+ P + + ++ F+ S+ + Sbjct: 121 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 179 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L +G L + ++ +R+ +EV+ + +E + Sbjct: 180 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAM 235 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185 + + K F S L + + Y F+ + + ++ + + + ++ Sbjct: 236 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLKSLPSR 295 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-------------LHILRKFCKEKVYYYVE 232 G V +IP D G+ + K Sbjct: 296 GDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 355 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNEL 285 + + ++SP+L++G +SPR ++ LK+ +G + EL Sbjct: 356 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGDTGLNWLMYEL 415 Query: 286 IWREFYRHLMAFYPS 300 +WR+F+R + Y S Sbjct: 416 LWRDFFRFITKKYSS 430 >gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus] Length = 164 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 +L+WREF+ P + P +I W+K+ L W + TGFP IDA M Sbjct: 10 YGQLLWREFFYTAATTNPRFDKME-GNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMT 68 Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 QL GW+H+ R A FL + DL + W G + F LLD D + N G W W + + Sbjct: 69 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 128 Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437 +F + P G+R DP G FIR +LP L P Sbjct: 129 F-QQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164 >gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens] Length = 194 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%) Query: 397 STGNDSVPYF----RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448 G VP+F + P G+R DP G +IR +LP L P +YI+ + + Sbjct: 5 GCGCLVVPFFNSFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQK 64 Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + +NYP P+V+H +A + + +Q Sbjct: 65 VAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQ 98 >gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula] Length = 308 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 10/279 (3%) Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 P + + + + + F + + + LP I ++ F+ Sbjct: 30 YEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDES 89 Query: 202 QA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + + + G NA L F + Y R TS LSP+L G +S Sbjct: 90 EKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSV 149 Query: 257 RQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 R+ ++ ++ + + + ++ + RE+ R+L +P +P + + Sbjct: 150 RKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIGLREYSRYLSFNHP-YTHERPLLGHLK 208 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 W D +AW+QG TG+P++DA MR+L GW+H+R+R++ ASF VK L + WR G Sbjct: 209 FFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWG 268 Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 +YF LLD DL S+ GWQ+ T D + RI NP Sbjct: 269 MKYFWDTLLDADLESDALGWQYITGTLPDCREFDRIDNP 307 >gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM 5692] Length = 469 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 80/438 (18%), Positives = 139/438 (31%), Gaps = 28/438 (6%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A A +I VF P G + R F+ L QV Sbjct: 28 YWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHFDFMLTGLRQV 84 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 S ++ GI F D L +C + + + + + + Sbjct: 85 ADSAAKLGIPFVLLTGE---DPPGELAGFCRTHAIGTVVMDFDPLRTKQQWQHTFAGHWE 141 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LTG 186 + + V S + ++ L + L R L Sbjct: 142 GECLEVDAHNVVPCRWASEKQEY-AARTIRPKLQRQLPEFLDPFPELVPHPVPWRGSLLP 200 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 R P + GE+ AL + R+F + Y E+R+ P S LS Sbjct: 201 EPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKRNDPTAGAVSGLS 260 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVC-M 303 PYL G ++P++ ++ + EL + + + Sbjct: 261 PYLHFGQIAPQRVALMARDANWAPAESREGFLEELVIRRELAENFCFYNPVYDCFGGLPA 320 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + + + W+ T P+ +AA +++ G MH +RM A +++ Sbjct: 321 WAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQTGKMHGYMRMYWAKKILE 380 Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412 LDG + G W+ G P+ R N Sbjct: 381 WSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIG-GVHDRPWKERPVYGKVRYMNDR 439 Query: 413 IQGKRFDPQGTFIRHWLP 430 ++FD Q +IR + P Sbjct: 440 GAARKFDVQA-YIRRFFP 456 >gi|323455842|gb|EGB11710.1| hypothetical protein AURANDRAFT_6503 [Aureococcus anophagefferens] Length = 127 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 2/125 (1%) Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 AW+ G TGFP++DAAMRQL GWM N +R + ASFLV+ L +DWR GE +F L+D D Sbjct: 4 AWQLGLTGFPLVDAAMRQLWVWGWMPNYVRHVVASFLVEHLHLDWRHGEAWFHDTLVDAD 63 Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444 A N WQ +G D + + +P K DP+G ++R W PEL +P +IH P Sbjct: 64 AAINAFMWQNGGRSGMDQWNF--VMHPVHAAKNCDPEGDYVRRWCPELAALPRDHIHQPW 121 Query: 445 SWLDK 449 Sbjct: 122 RAPAS 126 >gi|157888634|emb|CAP09289.1| cryptochrome 3 [Danio rerio] Length = 89 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 7 MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 M V+ + W R LR+ DN AL A + +D V V+I P + + F+ SL Sbjct: 1 MVVNSVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESL 59 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 + SL + + + Sbjct: 60 EDLDTSLRKLNSRLFVVR----GQPTDVFPRLFK 89 >gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis] gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis] gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis] Length = 557 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 68/445 (15%), Positives = 133/445 (29%), Gaps = 39/445 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + + + + F P+ R F+ L + Sbjct: 122 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDAT---IRHYGFMLKGLQE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + + L ++ + + + ++ + + K L Sbjct: 179 VAEECKELNIPFHLL----IGYAKDILPNFVKDHAIGGVVTDFSPLRVPLQWVEDVGKCL 234 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRL 184 V D ++P + + + ++ P Sbjct: 235 PEDVPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPPVIKHPYEPKFEA 294 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 G ++L+ F E++ ++ R+ P S Sbjct: 295 ETVDWDKCYKSLEVDRTVGEVEWAKPGTNAGFNVLQSFISERLKHFNSDRNNPNQNALSN 354 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G LS ++ +++ S ++ RE + + + Sbjct: 355 LSPWFHFGQLSVQRAILEVQKYRSKFKESVDSFVEE---AVVRRELADNFCFYNKNYDKI 411 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + + G T P+ +AA Q+ G MH LRM A Sbjct: 412 EGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQLQMVHEGKMHGFLRMYWA 471 Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ Y + LDG + G W+ G + R Sbjct: 472 KKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSI-CGIHDQGWAERAVFGKIR 530 Query: 408 IFNPTIQG--KRFDPQGTFIRHWLP 430 N QG ++FD F R + P Sbjct: 531 YMN--YQGCKRKFD-VAQFERRYHP 552 >gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC 51196] Length = 470 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 141/434 (32%), Gaps = 21/434 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN AL A + + V + R F+ L +++ Sbjct: 30 VYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYVFLNQGLADIEE 89 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++++ + F + +S+E L + + + Sbjct: 90 DMAERNVTFIVRR--PPGNSLEQLLEEVQAAMLIGDENPCREPERWRQVIAKRLNMPYWT 147 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + S L P + H + + + Q ++QA+ Sbjct: 148 IDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAEKSWPHPKGFEAFDVRHD 207 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 F G A +L+ F K+ Y ++R+ P + GTS+LSPYL Sbjct: 208 VTEGWSKFDRSVKPVDSFHGGTHEAQRLLKDFVTNKLANYPKERNHPELDGTSRLSPYLH 267 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SP +++ + ++ + WR+ + + F P + W Sbjct: 268 FGHISPLTIALAVEDAHKNKHASREACDSYLNELIAWRDMAVNFVKFVPGYDSFEAAPEW 327 Query: 311 TEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 +K + T + +AA RQ+ GWMHN +RM A +++ Sbjct: 328 AQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAGWMHNYMRMYWAKKILEW 387 Query: 365 L---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTI 413 + W LDG + G WA G P+F R + Sbjct: 388 SPSPVQAWETCVYLNDRYFLDGRDPNGYAGIAWAIG-GVHDRPWFERDIFGTIRYMSGNA 446 Query: 414 QGKRFDPQGTFIRH 427 K+FD +IR Sbjct: 447 AAKKFDAT-RYIRQ 459 >gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii] gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii] Length = 443 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 20/179 (11%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---------------S 54 LVW RNDLR+ DN AL AC S + V+ V++ P + + G Sbjct: 44 ALVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRTG 102 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++ F+ ++ +++ L G L ++ + Sbjct: 103 PGRARFLLEAVADLRQRLRDAGSDLVVR----LGRPEAVLKELAAAVGAGAVYCQSEVTA 158 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 E++ + + L L L L + + NL Sbjct: 159 EEMQVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVRQ 217 >gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A] Length = 462 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 73/409 (17%), Positives = 134/409 (32%), Gaps = 30/409 (7%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A ++ V+ VF G R F+ L ++ Sbjct: 21 YWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCL---IEGFLGAGRRHYEFMLKGLQEL 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFYNRQYEINEVRRDKLL 123 +++LS+K I F + + E++ ++ +I Sbjct: 78 EEALSRKKIPFYFLRGDPGQKIPEFVKEYEVGTLITDFSPLRIKAEWVGKIISAIEIPFF 137 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---LVQADLRSLPVP 180 E + V C + + L N L +P Sbjct: 138 EVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEEFPELEPNSESLKIRSGTGMPGI 197 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 R + P + + F GE+ A + F ++ Y R+ P Sbjct: 198 LFRTRETEIKALFPEEISDENKDLLFEPEHFEPGEKAARKEMESFLAARLDSYNTLRNDP 257 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S LSPYL G +S ++ +++ D K L+W+E + + Sbjct: 258 TKNALSNLSPYLHFGQISAQRVVLEVEKAKSDPESKKAFLDEI----LVWKEIADNFCYY 313 Query: 298 YPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + F W + + + K + + ++ G T P+ +A+ +L G MH+ Sbjct: 314 NPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEEFEAGKTHDPLWNASQIELLRTGKMHS 373 Query: 352 RLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 +RM A +++ + E LDG + G W+ Sbjct: 374 YMRMYWAKKILEWSESPEKALEVAICLNDRYELDGRDPNGYAGIAWSIG 422 >gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39] Length = 180 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 3/182 (1%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + LVW R DLR DN AL AA ++ D V A++IATPEQW QH ++ Q+ I+ L ++ Sbjct: 1 MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q+ L+ + Y Q ++F + + T++ NR YE++E +RD+ ++ L Sbjct: 60 QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119 Query: 129 HRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I S D + PPGS+ + +KV+TPF++A + L Q + PA P Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178 Query: 188 VT 189 T Sbjct: 179 ST 180 >gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis] gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis] Length = 253 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 5/182 (2%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS R +++L + + + S +L+WREF+ + A Sbjct: 67 LSPYLRFGCLSARLFYHQLADLYRKIKKSN--PPLSLQGQLLWREFF-YCAATRNPNFDR 123 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+ ++ L W G TG+P IDA MRQL GW+H+ R A FL + Sbjct: 124 MHNNPICVQIPWDVNAEALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRG 183 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W + + +F ++ P G++ DP G Sbjct: 184 DLWLSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFF-QQFFHLYCPVRFGRKADPSGD 242 Query: 424 FI 425 FI Sbjct: 243 FI 244 >gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus] Length = 183 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 R LR+ DN AL +D V V+I P + + F+ L + +L Sbjct: 1 FRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLR 59 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 + + + + + K Sbjct: 60 KLNSRLFVIR----GQPADVFPRLFKEWNIAK 87 >gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei] Length = 139 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 5 MEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 64 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL V W G F LLD D + N G W W + + +F + P G+R DP G Sbjct: 65 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGD 123 Query: 424 FIRHWLPELNNVPTQY 439 +IR +LP+L P++Y Sbjct: 124 YIRRYLPKLKGFPSRY 139 >gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula] Length = 235 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYA 63 +VW RNDLR+ DN+AL A + S V+ V+ P + + ++ F+ Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNES-ISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106 S+ ++K+L +G L + + Sbjct: 178 SISDLRKNLKARGSDLVVR----VGKPETVLVELAKKLGRMRC 216 >gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 875 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295 Q S++SPYLS G LSPR+ + L+ + L L R Y H M Sbjct: 537 MYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRDYWHWM 596 Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P+ P E+ +W D ++Q W G TG P DAAMR+L T G++ + Sbjct: 597 GLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 656 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410 R A L + DWR+G E+ LD D G + + + +D R + Sbjct: 657 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 714 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460 D G +++ WLP L+ +P YIH PH + L YP P+ Sbjct: 715 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 770 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 14/116 (12%) Query: 16 NDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN L A VIAV + + Q S ++ F S Sbjct: 232 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 291 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L +++ ++ + E + ++ T +F QY +E Sbjct: 292 LAKLRATIEE---ELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 344 >gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1] Length = 884 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 76/454 (16%), Positives = 145/454 (31%), Gaps = 34/454 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R TDN AL A D + VF P+ RQ F+ L Sbjct: 409 LYWMSRDQRPTDNWALLYARHLAQERDVPLRVVFCLVPKFLEAT---IRQFGFMLDGLQV 465 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ L +K I F + + L + +Q + + + K +L Sbjct: 466 VETHLRKKHIPFHLLT----GYAKDVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKL 521 Query: 128 QHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + +++ + + + L L +++L Sbjct: 522 KDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQLP 581 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 V + + + G + + +L +F E+++ Y + R+ P + S Sbjct: 582 DTVDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDALSN 641 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY G +S ++ L+ + ++ RE + + Sbjct: 642 LSPYYHFGQISVQRVV--LELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSV 699 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W ++ + T + +A+ QL G MH LRM A Sbjct: 700 EGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWA 759 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ + E+ LDG + G W+ G + R Sbjct: 760 KKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSI-CGIHDQGWGERPVFGKIR 818 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441 N ++FD F++ + P N + IH Sbjct: 819 YMNYKGCKRKFDI-AAFVKRYPPAAKNAAREAIH 851 >gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367] Length = 190 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 10/103 (9%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66 VW RNDLR+ DN+ L AA + S + V+ V+ P + + ++ F+ S+ Sbjct: 1 VWFRNDLRVHDNECLNAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVA 59 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 ++K+L +G L ++ + Sbjct: 60 DLKKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 98 >gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 871 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295 Q S++SPYLS G LSPR+ + L+ + L L R Y H M Sbjct: 533 MYSQRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREALLRLSRRDYWHWM 592 Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P+ P E+ +W D ++Q W G TG P DAAMR+L T G++ + Sbjct: 593 GLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 652 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410 R A L + DWR+G E+ LD D G + + + +D R + Sbjct: 653 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 710 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460 D G +++ WLP L+ +P YIH PH + L YP P+ Sbjct: 711 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 766 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%) Query: 16 NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN L A VIAV + + Q S ++ F S Sbjct: 228 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 287 Query: 65 LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L +++ L + + E + ++ T +F QY +E Sbjct: 288 LAKLRAKLEEELNVPLLIR----CGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 340 >gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa] gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa] Length = 471 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 113/330 (34%), Gaps = 47/330 (14%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A +N V+ V+ P + + +++F+ S+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K+L +G L ++ +R+ +EV+ ++ +E+ Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIR 183 ++ + + L L L+ K +Q L + + Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK---------------------- 221 G V P +IP D I N Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQRLNKF 361 Query: 222 --FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----------EFV 268 C+ + I + ++SP+L++G +S R ++ LK+ Sbjct: 362 AAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTISAASNHNS 421 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 P +G + EL+WR+F+R + Y Sbjct: 422 GGSSSPGAGMNWLMFELMWRDFFRFITKKY 451 >gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa] gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa] Length = 230 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65 +VW RNDLR+ DN+ L +A +N V+ V+ P + + +++F+ S+ Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 ++K+L +G L ++ + Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAH 225 >gi|242812722|ref|XP_002486016.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500] gi|218714355|gb|EED13778.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500] Length = 356 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 V W G E F L+D + ASN G W W + T S Y+R ++P G+R+DP G F Sbjct: 258 CYVSWEQGVEVFQEWLIDHEEASNVGNWMWLSCTAFFSQ-YYRCYSPIAFGRRWDPNGDF 316 Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457 +R + PEL + +YI+ P K+ ++ P Sbjct: 317 VRRYCPELKDYDKKYIYEPWRAPIKDQKNMGMP 349 >gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379] gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus DSM 2379] Length = 450 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 82/438 (18%), Positives = 138/438 (31%), Gaps = 32/438 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A A ++ +F P RQ F+ L + Sbjct: 23 VYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFLGAT---LRQYGFMLRGLAE 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L++ I F + + + L S+ + RV + + + + + Sbjct: 80 TAQLLAKMNIPFYLLR----GEPVGQLCSFVERNRVGTVVTDFDPLRVKRVWREGAARLC 135 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S R L P P Sbjct: 136 GVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRRLLADFLHEFPPLIPHPHAWPVPFQP 195 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P I + P G + A LR F + + Y +R+ P G S+LS Sbjct: 196 LDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYGLRRNDPCCDGQSELS 255 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G L+P++ E V L S ++ RE + + + Sbjct: 256 PWLHFGQLAPQRV----ALETVRTLSGSPSSEAFLDELIVRRELSDNFCLHNQAYDRLEG 311 Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F W + + + + + ++ T P+ +AA R L G MH LRM A Sbjct: 312 FPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLLLGGKMHGYLRMYWAKK 371 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFN 410 +++ LDG + G W+ +D R N Sbjct: 372 ILEWSASPEEALAVAIRLNDRYSLDGRDPNGYAGIAWSMGGVHDRAWGERPVFGKIRYMN 431 Query: 411 PTIQGKRFDPQGTFIRHW 428 ++FD +IR W Sbjct: 432 DRGCRRKFDVDA-YIRRW 448 >gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 162 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428 + GWQ+ T DS + RI NP +G +FDP G ++R W Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162 >gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4] Length = 170 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 7/175 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRAFD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++ L R + ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPP 169 >gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula] Length = 234 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 + G NA L +F ++ + YVE R + TS LSPYL G LS R+ + ++ + Sbjct: 28 WSPGWSNADKALTEFAEQHLIDYVESR-LKVGTSTSLLSPYLHFGELSVRKVFQCVQLKQ 86 Query: 268 ----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + K +L + RE+ R+L +P + + + WN + Sbjct: 87 LLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP-FTHERSLLSNLKYFPWNDNQVHF 145 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 +AW+QG TG+P++DA MR+L GW+HN++R+I +SF VK LL+ WR G +YF LLD Sbjct: 146 KAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDA 205 Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNP 411 DL S+ GWQ+ + + D+ R+ NP Sbjct: 206 DLESDILGWQYISGSLPDAHELERLDNP 233 >gi|327342146|gb|AEA50860.1| cry1-2 [Populus tremula] Length = 104 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+AVF+ PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 SL + SL G + + DS+ L T+LF+N Sbjct: 59 SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNH 102 >gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora] Length = 189 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 10/166 (6%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L +A + S + V+ V+ P + + ++ F+ S+ Sbjct: 1 WFRNDLRVHDNECLNSANNESMS-VLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVAD 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+L KG L ++ +R+ +EV+ + +E L Sbjct: 60 LRKTLQAKGSDLVVR----IGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVL 115 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + + + L L L K +Q L Sbjct: 116 KEEGVEVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKEKVQGLEVRK 161 >gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH] Length = 168 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 7/174 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + + +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G + D + S+ +++NR+Y + D Sbjct: 59 LHGSLRALDAALAGLGGRLVLLR----GDEADTFVSFVAALGAGAVYWNRRYAFAQRALD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 ++ L R + ++F+ S+L P I+N + Y+V+ + +A ++ Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPP 168 >gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera] Length = 212 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 10/153 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66 VW RNDLR+ DN+ L +A + S + + V+ P + + ++ F+ S+ Sbjct: 7 VWFRNDLRVHDNECLNSASNESMSM-LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++++L ++G L ++ +R+ +EV+ ++ +E Sbjct: 66 DLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAA 121 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 ++ + + L L ++ Sbjct: 122 MKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNY 154 >gi|226495065|ref|NP_001144536.1| hypothetical protein LOC100277533 [Zea mays] gi|195643560|gb|ACG41248.1| hypothetical protein [Zea mays] Length = 131 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 4/118 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 +VW R DLRI DN AL AA V+ +FI P + Q+ ++ SL + K Sbjct: 8 VVWFRRDLRIQDNPALAAAAK--GGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLAHLGK 65 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 SL G + D ++ L T++ YNR Y D + + Sbjct: 66 SLELLGCPLVLIRAE--DSTLAALLECVRSISATRVVYNRLYGNCTSLSDTIFQDNCF 121 >gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula] Length = 177 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 6/166 (3%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL AA D V VFI P++ Q ++ SL Sbjct: 4 SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +SL G + + ++ L T++ +N Y+ + RD ++++L Sbjct: 62 LGQSLKSLGAELVLIKTHS---TVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118 Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 I + L P I + + + + + ++ Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEP 164 >gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica] gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica] Length = 470 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 71/443 (16%), Positives = 136/443 (30%), Gaps = 35/443 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + F P R F+ L + Sbjct: 38 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGAT---IRHYDFMLRGLEE 94 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + L ++ + + + ++ + K ++ L Sbjct: 95 VAEECEKLHIPFHLL----LGLPKDVLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGL 150 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 +V D ++P + + + + + + P P+ Sbjct: 151 PKQVPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYPSNIQA 210 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV + + G + L +L+ F +++ Y+ R+ P S Sbjct: 211 EPVDWNACRAGLQVDRSVKEVSWAKPGTASGLTMLQSFISQRLPYFGSDRNNPNKDALSN 270 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +++ P S A ++ RE + + + Sbjct: 271 LSPWFHFGQVSVQRAILEVQKHRSR---YPDSVANFVEEAVVRRELADNFCFYNKNYDKL 327 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + G T P+ +AA Q+ G MH LRM A Sbjct: 328 EGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQMVQEGKMHGFLRMYWA 387 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ E LDG + G W+ G + R Sbjct: 388 KKILEWTRSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSI-CGIHDQGWAEREIFGKIR 446 Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430 N ++FD F R + P Sbjct: 447 YMNYAGCKRKFD-VAEFERKYSP 468 >gi|323451015|gb|EGB06894.1| hypothetical protein AURANDRAFT_28788 [Aureococcus anophagefferens] Length = 183 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 M+ ASFLV+ L V W G +F L+D D A N WQ A +G D + + +P Sbjct: 1 MVVASFLVEYLRVSWVQGAAWFEETLVDMDPAINAMMWQNAGRSGIDQWNF--VMSPENA 58 Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACH 468 + DP G F ++PEL +PT+++H P + L YPL +VD Sbjct: 59 SQ--DPTGKFTLRYVPELAGLPTKHLHRPWTAPAAALAKAGVALGETYPLRVVDLAAERA 116 Query: 469 HTLNQYYAAK 478 + A + Sbjct: 117 LSTAAVLAMR 126 >gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni] gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni] Length = 534 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 74/437 (16%), Positives = 134/437 (30%), Gaps = 29/437 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D RI DN AL A + D + VF P+ R F+ L + Sbjct: 97 VYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKFLNAT---LRHYKFMLGGLKE 153 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K I F + E L + + + + + + + K L Sbjct: 154 VEKECRDLNIGFHLL----LGPAREELPKFVRDNDIGAVICDFAPLRVPRQWVEDVTKGL 209 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + + L + L + + + Sbjct: 210 PKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEFPVVAKHPHGKSSAK 269 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S G A L +FC ++ + QR+ P S LS Sbjct: 270 INWTSAYEMLECDKSVDEVEWAQPGYNAACRQLYEFCTRRLGKFHNQRNNPTADALSGLS 329 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VCM 303 P+L G +S ++C +K ++ + + + + Y S V Sbjct: 330 PWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIVRRELADNFCYYNENYDSLKGVTS 389 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + L+ + T + ++A QL G MH LRM +++ Sbjct: 390 WAYQSLDAHRKDPRDPCYKLEDLETARTYDDLWNSAQLQLVKEGKMHGFLRMYWGKKILE 449 Query: 364 DLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTI 413 LDG + G W+ +D+ R N Sbjct: 450 WTESPEQALEWTILLNDKYSLDGRDPNGYVGCMWSIGGIHDTAWKERPIFGKVRYMN--Y 507 Query: 414 QG--KRFDPQGTFIRHW 428 QG ++FD F+ + Sbjct: 508 QGCKRKFDVNA-FVARY 523 >gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris] gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris] Length = 161 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 1/160 (0%) Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 + + +L + RE+ R++ +P +P + + W D + +AW+ Sbjct: 3 NEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 61 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD DL S Sbjct: 62 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 121 Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 + GWQ+ T DS + RI NP +G +FDP G ++R Sbjct: 122 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161 >gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum] Length = 189 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L AA + S + V+AV+ P + + ++ F+ S+ Sbjct: 1 WFRNDLRVHDNECLNAAHNESMS-VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVAD 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++K+L +G L ++ +R+ Sbjct: 60 LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 102 >gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM 12261] Length = 456 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 71/412 (17%), Positives = 144/412 (34%), Gaps = 21/412 (5%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A + ++ VF TP S R HF+ L +V Sbjct: 20 YWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFLS---ASYRAYHFMLHGLHEV 76 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127 ++ L I F + ++ L + + V+ LF + + +++ + Sbjct: 77 RQGLLGLNIPFILLE----QEAPLSLPNLIKKIDVSALFTDFSPLRIKKEWVEQIKKDIA 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + ++ + ++ + + + +R + L Sbjct: 133 IPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETLALKTA 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + ++ G + L+KF K+K+ Y E R+ P SQLSP Sbjct: 193 APLEMLTKYHYPQKTLPLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTNNVLSQLSP 252 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G ++P++ +K+ + S ++ RE + + PS + F Sbjct: 253 FLHFGQIAPQRVAIVIKKHGENHESIRDSVDSFLEELIVRRELADNFCFYTPSYDCFEGF 312 Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W +K + + G T + +A + G +H+ LRM A + Sbjct: 313 PQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDILFHGKLHSWLRMYWAKKI 372 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGND-SVPYFRIF 409 ++ + +DG + G W+ +D + P +IF Sbjct: 373 LEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSIGGVHDRAWPERQIF 424 >gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis] gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis] Length = 204 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 11 LVWLRNDLRITDNKALYA---ACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W R LR+ DN AL A + + V +FI P + A + F+ +L Sbjct: 9 VHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQTL 68 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101 + + L + + D S+ ++ Sbjct: 69 HDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVEL 104 >gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura] gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura] Length = 540 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 138/403 (34%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ + GI F +++ L + + V + + + + + K L Sbjct: 159 VEEQCRELGIPFHLL----LGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 215 PKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGCKK 274 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V P + P + +D G + A L +FC ++ + ++R+ P + S Sbjct: 275 VKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDALS 334 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + + Sbjct: 335 GLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEE---AIVRRELADNFCYYNENYDS 391 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K PW + + + L+ +Q T + ++A QL G MH LRM Sbjct: 392 LKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYW 451 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ + E + LDG + G W+ Sbjct: 452 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 494 >gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica] Length = 126 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%) Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456 + RI NP QG +FDP G ++R WLPEL +PT++IH P + + +L NY Sbjct: 1 REFDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNY 60 Query: 457 PLPIVDHKKACHH---TLNQYYA 476 PLPIV+ A L++ + Sbjct: 61 PLPIVEIDAAKARLQQALSEMWQ 83 >gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus] Length = 556 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 63/396 (15%), Positives = 117/396 (29%), Gaps = 18/396 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN AL A + A+ + + F P RQ F+ L + Sbjct: 111 LYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATY---RQYAFMLKGLQE 167 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K I F + + L S+ + + + + ++ + ++K L Sbjct: 168 VAKECKSLDIQFHLLS----GEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHL 223 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + L+ + P Sbjct: 224 PADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHPHSASRAA 283 Query: 188 VTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + G +++L F +++ + R+ P S Sbjct: 284 EPVDWEEVLSSLEVERSVGEVDWAQPGTSGGMNMLESFIDQRLRLFATHRNNPNYDALSH 343 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVC 302 LSP++ G LS ++ ++K E + FY Sbjct: 344 LSPWIHTGQLSAQRVVKQVKREKNASESVASFIEELVVRRELADNFCFYNPSYDNISGAY 403 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + + + T + +AA RQL + G MH LRM A ++ Sbjct: 404 DWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKKIL 463 Query: 363 KDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQWA 395 + LDG + G W+ Sbjct: 464 EWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWS 499 >gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum] Length = 189 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQ 67 W RNDLR+ DN+ L AA + S + V+AV+ P + + ++ F+ S+ Sbjct: 1 WFRNDLRVHDNECLNAAHNESMS-VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVAD 59 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 ++K+L +G L ++ +R+ Sbjct: 60 LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 102 >gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis] gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis] Length = 540 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 137/403 (33%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ GI F +++ L + + V + + + + + K L Sbjct: 159 VEEQCRDLGIPFHLL----LGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 215 PKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGCKK 274 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V P + P + +D G + A L +FC ++ + ++R+ P + S Sbjct: 275 VKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDALS 334 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + + Sbjct: 335 GLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEE---AIVRRELADNFCYYNENYDS 391 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K PW + + + L+ +Q T + ++A QL G MH LRM Sbjct: 392 LKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYW 451 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ + E + LDG + G W+ Sbjct: 452 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 494 >gi|327342140|gb|AEA50857.1| cry1-1 [Populus tremula] Length = 104 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW R DLR+ DN AL A V+AVF+ PE+ + ++ Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEEEGHYYPGRVSRWWLKQ 58 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 SL + SL G + + DS+ L T+L +N Sbjct: 59 SLGHLDSSLRSLGTSLVTKRST---DSVSTLLEVVKSTGATQLLFNH 102 >gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis] Length = 661 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 41/218 (18%) Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 L L R+F+ I +EW +D L + W QG TG P +D Sbjct: 427 WRWLLMHLAIRDFFVFTAVKEGDALEAPGGIRG-RAVEWRRDDELFRRWAQGQTGLPFVD 485 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A MR+L G+M NR R +L +DWR+G YF S L D + A N G W + A Sbjct: 486 ACMRELGATGFMSNRGRQ-------NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAG 538 Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH---------------- 441 TG+D P R F QG+R+DP+ I+ W+P+L + + Sbjct: 539 TGSD--PRDRRFKTVSQGERYDPEARLIQAWVPQLAALRPAQLAHQPWAAPPAALAAAGV 596 Query: 442 ----APHSWLDKND-----------LSLNYPLPIVDHK 464 P + + L YPLP+VD Sbjct: 597 RLGCEPQAATAEAGTERQEQQKQQQLGGWYPLPVVDPA 634 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 21/98 (21%) Query: 10 HLVWLRNDLRITDNKALYAACH-------NSDAK-VIAVFIATPEQWRQ----------- 50 L+W RNDLR+ D++ L++A + ++ + + Sbjct: 37 ALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAGELPQEGGL 96 Query: 51 --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 + + + + ++ +L + G Q Sbjct: 97 DIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRP 134 >gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 448 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 75/435 (17%), Positives = 137/435 (31%), Gaps = 28/435 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A ++ + VF + + R F+ L + Sbjct: 27 VYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLSRDFIGAP---IRHYDFMLRGLTE 83 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K LS+ + F+ + E L Y ++ L + ++ + + + L Sbjct: 84 TAKELSKLNVSFKI----PLGEPKEKLPLYAKKRDPAVLVTDFSPLRHQKGWIESVYEYL 139 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D ++P + + P Q + A +P Sbjct: 140 --SCPIDQVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFLTAFPEMKKLPYEDRETD 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 PS D ++ P G LR F + Y R+ P + GTS+LSP Sbjct: 198 RVPSTEELRLDGSVLPVEGEIP-GSAAGEMRLRSFIARGLSGYDRDRNDPNLDGTSRLSP 256 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 Y+ G +S + + DL + + + F + + + + Sbjct: 257 YIHFGQISAQTVVR--EAFLADLPGSDAFVEEAMVRRELAENFCLYEPLYDRYEALPEWG 314 Query: 308 IPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + +K L ++ T + +AA L G +H LRM L+ Sbjct: 315 RKALDHHRSDKRPWLYGLSELEEAGTHDELWNAAQLSLRRKGRIHGYLRMYWGKMLLLWS 374 Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGND-SVPYFRIFNPTIQ------G 415 LDG + G W +D P +F Sbjct: 375 PSPEEAFSRALYLNDRYALDGRDPNGYTGVAWCIGGLHDRPWPKRPVFGSVRSMALSGCA 434 Query: 416 KRFDPQGTFIRHWLP 430 ++FD + +I ++P Sbjct: 435 RKFDVK-RYIASFVP 448 >gi|87304172|ref|ZP_01086694.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87281427|gb|EAQ73501.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 180 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 11/130 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65 L W DLR+ DN +L AA + ++ +++ P + + + + F++ SL Sbjct: 4 LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 + +++SL G F + + + ++ +R E + + ++ Sbjct: 62 MALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKD 117 Query: 126 RLQHRVICKS 135 RL V + Sbjct: 118 RLPKAVFQQF 127 >gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3] gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium chlorochromatii CaD3] Length = 459 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%) Query: 9 VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 V + W+ D R+ N AL A ++ VF P R ++ L Sbjct: 23 VVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLAPSFLGAP---LRHYDVLFNGL 79 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +V+ L I F Q + E L Y + + + + + + Sbjct: 80 QEVETELRALNIPFMVLQ----GEPSEELPRYAMHHNASMVVADYSPLHLTRCWKNQVAE 135 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L V D ++P + P L+ + +P Sbjct: 136 AL--SVPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFLTPFPELEALPQPLTE 193 Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV + F + GE A L+ F ++K+ Y QR+ P+++ TS+ Sbjct: 194 PPVNWQKLRSHFHADASVAPVGWLTAGEAGAHATLQCFVQQKLNGYATQRNDPSLEATSR 253 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +S + ++K K ++ RE + + S Sbjct: 254 LSPYLHFGQISTQFVALQVKAAHAPQEDKDAFLEEL----IVRRELSDNYCHYNASYDRL 309 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W + + +A++Q T P+ +AA +L G +H +RM A Sbjct: 310 SGIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPLWNAAQHELLQSGIIHGYMRMYWA 369 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ E LDG + G W+ G P+ R Sbjct: 370 KKILEWSRTPEEAFEIALWLNDRYALDGREPNGYVGVAWSIG-GVHDRPWRERPVYGTIR 428 Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429 N ++FD ++ ++ Sbjct: 429 YMNANGCARKFD-----VKRYI 445 >gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4] Length = 479 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 141/435 (32%), Gaps = 21/435 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN AL A +D + V + R HF+ LL V+ Sbjct: 35 VYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVEN 94 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+++GI F +++ + R E K +E Sbjct: 95 DLAERGIGFVLRNAPEC-SPVQFFADAHAAIVIGDENPLRAMERWRSMVAKNIEVPYWTI 153 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLTGPVT 189 +L K + P L++++ A + P ++ Sbjct: 154 DTDVIVPSKLLEKAQYAARTIRPRLKKFLPEFLHLVKSIDNSAPAKEWQQPRGLRHDKLS 213 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 ++ D + G A + + + Y +R+ P GTS LSP+L Sbjct: 214 IDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTKNLGNYDRERNHPETDGTSMLSPFL 273 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G + P +++ SG + WRE + + + P+ P Sbjct: 274 HFGHIGPLTIALAVRKAIQTNPAAKVSGEAYLDQLITWRELCINFVKYEPNYDTAACADP 333 Query: 310 WTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 W + + ++ T + +A+ RQ+ GWMHN +RM A +++ Sbjct: 334 WAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYRGWMHNYMRMYWAKKILE 393 Query: 364 D---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412 + V + LDG + G W A G + R + Sbjct: 394 WSPSVDVAFERAVHLNDRYFLDGRDPNGYGSIAW-ALVGKFDRAWGERPIFGKIRYMSGA 452 Query: 413 IQGKRFDPQGTFIRH 427 G++FD + +I Sbjct: 453 STGRKFDSK-KYIAQ 466 >gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis] gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis] Length = 530 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 75/443 (16%), Positives = 138/443 (31%), Gaps = 39/443 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 92 LYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---LRHYKFMLGGLQE 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ + I FQ + E L + + + + + + + K L Sbjct: 149 VEQQCHELNISFQLL----LGPAAERLPEFVTAEDIGAVICDFAPLRLPRQWVADVVKAL 204 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + L + L + Sbjct: 205 PGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEFLSEFPPVIRHPHGKGQAK 264 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 T + +D G L +FC ++ ++ E+R+ P S Sbjct: 265 ESTDWTAAYALLSCDKTVDAVDWAKPGYTAGCRQLYEFCTRRLRHFNEKRNDPTADALSG 324 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 325 LSPWLHFGQISAQRCILEVQRYSAMHKASADAFCEE---AIVRRELADNFCYYNEHYDSL 381 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W + + + L+ +Q T + ++A QL G MH LRM A Sbjct: 382 KGLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYDDLWNSAQLQLVKEGKMHGFLRMYWA 441 Query: 359 SFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ LDG + G W+ G + R Sbjct: 442 KKILEWTETPELALEYSILLNDKYSLDGRDPNGYVGCMWSIG-GVHDQGWKERDIFGKIR 500 Query: 408 IFNPTIQG--KRFDPQGTFIRHW 428 N QG ++FD F+ + Sbjct: 501 YMN--YQGCKRKFDINA-FVMRY 520 >gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f. nagariensis] gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f. nagariensis] Length = 97 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 ++W RNDLR+ DN L AC V+ V++ P + + ++ FI + Sbjct: 7 AVMWFRNDLRLHDNPVLDRACREG-TSVLPVYVLDPRDYGKGPNGFGRTGPTRAQFIMDA 65 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 + ++ L G E + Sbjct: 66 VQDLRSRLRAAGSDLIVR----MGHPEEVVPELAR 96 >gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri str. Fusaro] Length = 462 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 147/447 (32%), Gaps = 38/447 (8%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ D R+ DN AL A +D V VF + RQ F+ L +V Sbjct: 21 YWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAI---RRQYEFMLKGLQEV 77 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-------- 120 + +L++K I F + Q D E + + + + L + + Sbjct: 78 EATLARKKIPFFFLQ----GDPEEKIPDFIEKYGIGTLITDFSPLRIKRTWTEKVASSIK 133 Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 E + V C + L++ + L NL ++ Sbjct: 134 VPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTEYPELETNLEFPEIAVRSG 193 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQ 233 A R + R + P GE A ++ +F K+ Y Sbjct: 194 KAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFLTNKLDSYSSL 253 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R+ P S LSPYL G +S ++ ++++ DL K + + + F + Sbjct: 254 RNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESKRVFLDELLVRKELADNFCYY 313 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + ++ SH+ + G T P+ +A+ +L G MH+ Sbjct: 314 NPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLWNASQIELIRKGKMHS 373 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV----- 403 +RM A +++ + E LDG + G W+ +D Sbjct: 374 YMRMYWAKKILEWSESPEKALETAIYLNDKYELDGRDPNGYAGIAWSIGGVHDRAWQERE 433 Query: 404 --PYFRIFNPTIQGKRFDPQGTFIRHW 428 R + ++FD + ++I + Sbjct: 434 IFGKIRYMSYEGSKRKFDVK-SYIDKY 459 >gi|8134633|sp|Q28811|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus] Length = 532 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 121/400 (30%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + F P R F+ L + Sbjct: 100 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGAT---IRHYDFMLRGLEE 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + L ++ + + + ++ + K ++ L Sbjct: 157 VAEECEKLCIPFHLL----LGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDAL 212 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 +V D ++P + + + + + + P + Sbjct: 213 PRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYTSNVQA 272 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV + + G + L +L+ F E++ Y+ R+ P S Sbjct: 273 EPVDWNGCRAGLQVDRSVKEVSWAKPGTASGLTMLQSFIAERLPYFGSDRNNPNKDALSN 332 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +++ P S ++ RE + + + Sbjct: 333 LSPWFHFGQVSVQRAILEVQKHRSR---YPDSVTNFVEEAVVRRELADNFCFYNKNYDKL 389 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + G T P+ +AA Q G MH LRM A Sbjct: 390 EGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQTVKEGKMHGFLRMYWA 449 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ E LDG + G W+ Sbjct: 450 KKILEWTRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWS 489 >gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula] Length = 226 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467 QG +FDP+G ++R WLPEL +P ++IH P +L +NYP PI+D A Sbjct: 2 QGSKFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLAR 61 Query: 468 HH---TLNQYYAA 477 + + + Sbjct: 62 ERLMEAIFKMWEM 74 >gi|41055064|ref|NP_957358.1| hypothetical protein LOC394039 [Danio rerio] gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio] Length = 516 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 69/437 (15%), Positives = 134/437 (30%), Gaps = 28/437 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D RI DN AL + + A+ + + F P+ RQ F+ L + Sbjct: 74 LYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATY---RQYAFMLKGLQE 130 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K I F + + L ++ + + + ++ ++K L Sbjct: 131 VVKECKSLDIEFHLLS----GEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHL 186 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPVPAIRLT 185 + D ++P + +Q + + + P A R Sbjct: 187 PSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAA 246 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + + G + +L F ++++ + R+ P S Sbjct: 247 KIIDWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPNSDAVSH 306 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVC 302 LSP++ G LS ++ ++K + + FY Sbjct: 307 LSPWIHAGQLSAQRVVMQVKRKKNASESVASFIEEIVVRRELADNFCFYNQNYDNISGAY 366 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + + + T + +AA RQL G MH LRM A ++ Sbjct: 367 DWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMYWAKKIL 426 Query: 363 KDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNP 411 + LDG + G W+ G + R N Sbjct: 427 EWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSI-CGIHDQGWAERPIFGKIRYMNY 485 Query: 412 TIQGKRFDPQGTFIRHW 428 ++FD + F R + Sbjct: 486 AGCKRKFDVE-QFERKY 501 >gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum] Length = 188 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68 RNDLR+ DN+ L AA + S + V+ V+ P + + ++ F+ S+ + Sbjct: 1 FRNDLRVHDNECLXAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 +K+L +G L ++ + Sbjct: 60 RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 96 >gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis] gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis] Length = 538 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 73/442 (16%), Positives = 144/442 (32%), Gaps = 37/442 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 100 VYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---LRHYKFMLGGLQE 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ + + F ++E L + +++ + + + + + K L Sbjct: 157 VEQQCRELNVSFHLL----LGPAVERLPQFVKDEKIGAVICDFAPLRLPRQWVEDVVKAL 212 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + + L + L + Sbjct: 213 PAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEYLTEFPPLIKHAYGNVKGS 272 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +++D G A L FC ++ ++ ++R+ P S Sbjct: 273 RSVDWTAAYEMLSCDKSVDAVEWAKPGYTAACRQLYDFCTRRLRHFNDKRNDPMADALSG 332 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +S ++C E I +S + ++ RE + + Sbjct: 333 LSPWLHFGQISAQRCV---LEVGRYKTIYKESVEAYFEEAIVRRELADNFCYYNEHYDSL 389 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W + + + L+ + T + ++A QL G MH LRM A Sbjct: 390 KGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 449 Query: 359 SFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 +++ + E LDG + G W+ +D R Sbjct: 450 KKILEWTETPEQALEYSILLNDKYSLDGRDPNGYVGCMWSIGGIHDQGWKERAIFGKIRY 509 Query: 409 FNPTIQG--KRFDPQGTFIRHW 428 N QG ++FD ++ + Sbjct: 510 MN--YQGCKRKFDVNA-YVMRY 528 >gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 524 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 18/191 (9%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 +S+LS +L++G++SPR E GA + L R+F+ +L Sbjct: 343 NNSSRLSTFLALGIISPRTVHAITAE--------GGEGARWLCSHLTMRDFFIYLCFASG 394 Query: 300 SVCMGKPFIP--------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 S + +P + + W QG+TG P+IDA MR+L G+ N Sbjct: 395 SRLYQQEGLPVNAKRKNIPWYSPAAPQKYDCWRRWAQGFTGLPLIDAGMRELCQTGYCSN 454 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 R+R AS L +DL +DWR G E L D +A+N G W + + G D P R F Sbjct: 455 RVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANWGNWLYFSGVGPD--PKSRHFRS 512 Query: 412 TIQGKRFDPQG 422 Q R+DP+ Sbjct: 513 VSQALRYDPEA 523 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 47/172 (27%), Gaps = 24/172 (13%) Query: 13 WLRNDLRITDNKALYA--------ACHNSDAKVIAVFIAT-------PEQWRQHG----- 52 W R DLR+ DN LY N +I++++ P Sbjct: 15 WHRRDLRLADNP-LYHPNANDCNKLTVNDSQNIISLYVFDQGDFSLTPSVTGDPNWTVAR 73 Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + ++ +++ +++SL G + + + VT++ +N Sbjct: 74 TGPHAARYLRRAVVDLRRSLRSIGGELLVRIGDPRLIVPQVVKEL---RDVTEVTWNEDP 130 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 + E + L + P + Y Sbjct: 131 GVYERNTSDNVRNELFFQQPLVRITTVASTPLYHPDDLPRSKYDWDRLAHPK 182 >gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena] Length = 187 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68 RNDLR+ DN+ L AA + S + V+ V+ P + + ++ F+ S+ + Sbjct: 1 FRNDLRVHDNECLNAANNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 +K+L +G L ++ +R+ Sbjct: 60 RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSH 101 >gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2] Length = 450 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 128/437 (29%), Gaps = 30/437 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W+ + R+ DN L A + + ++ VF P RQ F+ + L QV Sbjct: 22 LYWMSREQRVRDNWGLLHAREMAGQEHALVVVFCLAPAFLGAT---LRQYDFMLSGLAQV 78 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L+ GI F Q D + + + + + + L Sbjct: 79 EGDLAALGIPFVLLQ----GDPGQEIPRLAAELGAGGVVTDFDPLRVKQGWQGAAAHALP 134 Query: 129 HRVICKSFDDSVLLPPGSILNHAL---QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 I + V S K++ + L + + P Sbjct: 135 VSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPLEPQVAPAPPCAATA 194 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + GE A L +F ++++ Y QR+ P GTS+L Sbjct: 195 RAAHWGEVRAGLAVDGAVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRNDPNADGTSRL 254 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----PSV 301 S Y G L+P++ EL + P+ Sbjct: 255 SAYFHFGQLAPQRAALAAAASGRGEGQAAYLEELVVRRELADNFCLHNPQYDSLAGAPAW 314 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + ++Q TG + +AA +L G+MH +RM A + Sbjct: 315 ALKTLGEHRADPRAHCYTRET---FEQARTGSRLWNAAQNELRQTGFMHGYMRMFWAKKI 371 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA-ASTGNDSVPYFRIFNPTIQG-- 415 ++ LDG + G W+ A + +F Sbjct: 372 LEWSATPEEAHATALALNDRYQLDGRDPNGYVGILWSLAGLHDRPWQTRPVFGSVRFMNE 431 Query: 416 ----KRFDPQGTFIRHW 428 ++FD +I W Sbjct: 432 NGCRRKFDVD-KYIERW 447 >gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545] Length = 781 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 10 HLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 H+VW R DLR+ D+ L A + VI +F+ P + S ++ ++ +++ + Sbjct: 374 HIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGTPSDARA--LHEAVVAL 431 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + SL G D + S T L R+ E V + L+ Sbjct: 432 RASLRALGSDLVVR----VGDPSMEMPSVAAALGATSLAAARELEWARVAGWRETLAALR 487 Query: 129 HRVICKSFDD 138 + Sbjct: 488 AAGVKCDTWH 497 >gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum TLS] gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum TLS] Length = 459 Score = 97.6 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 123/400 (30%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N AL AC ++ + VF +P R F++ L + Sbjct: 26 IYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAPM---RHYDFMFRGLRE 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ L + G+ F + + E L Y ++ + + + ++L Sbjct: 83 VETRLRELGVPFTVL----YGEPGETLPKYTEKRNAGVVVADFSPLKLVRGWKLAVAQQL 138 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +++ + + + L L L P Sbjct: 139 -SCAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPELRHQPDTLPPP 197 Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V + + P GE A LR F ++ Y ++R+ P S LS Sbjct: 198 VQWNAMETLLKVDRSIKAVPGLEPGETAAEARLRSFVTGRLSRYADERNDPNSGAVSGLS 257 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G LS E + I RE + + Sbjct: 258 PYLHFGQLSA----QHATFEAARSKASEVNREAFVEELFIRRELSENYCYYNERYDSFDG 313 Query: 307 FIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W +K A +++ T P+ +AA QL G +H +RM A Sbjct: 314 IPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPLWNAAQTQLLETGIIHGYMRMYWAKK 373 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ + M LDG + G W+ Sbjct: 374 ILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIG 413 >gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis carolinensis] Length = 535 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 139/443 (31%), Gaps = 35/443 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + F P+ RQ F+ L + Sbjct: 100 LYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFLEAT---IRQFGFMLKGLKE 156 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + + L + + + + + ++ + +++RL Sbjct: 157 VAEECQELSIPFHLL----IGFAKDTLPPFVAKHNIAGVVTDFAPLRVPMQWVQEVQERL 212 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 V D ++P + + + + P A Sbjct: 213 PPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPVIQHPHQAASQA 272 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P+ + + G L +L +F +E++ ++ R+ P S Sbjct: 273 EPIDWDACSASLEVDRSVPEVEWAKPGSAAGLLVLGEFVQERLKFFSSDRNNPNRAALSN 332 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +++ ++ LI RE + + P+ Sbjct: 333 LSPWFHFGQVSVQRAILEVRKHRTRCRESVEAFIEE---ALIRRELADNFCFYNPNYDKV 389 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + + +G T + +AA Q+ G MH LRM A Sbjct: 390 EGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQLQMVHEGKMHGFLRMYWA 449 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ + LDG + G W + G + R Sbjct: 450 KKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYVGCMW-SVCGIHDQGWAERAVFGKIR 508 Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430 N K+FD G F R + P Sbjct: 509 YMNYAGCTKKFD-VGQFERKYNP 530 >gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis] Length = 170 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQV 68 RNDLR+ DN++L AA + S + V+ V+ P + + ++ F+ S+ + Sbjct: 1 FRNDLRVHDNESLNAAHNESMS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDL 59 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 +K+L +G L ++ + Sbjct: 60 RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAH 96 >gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi] gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi] Length = 530 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 142/442 (32%), Gaps = 37/442 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 92 VYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCLVPKFLNAT---LRHYMFMLGGLQE 148 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I FQ ++E L ++ + + + + + + + K L Sbjct: 149 VEQQCRDLNISFQLL----LGPAVERLPAFVVAEEIGAVVCDFAPLRLPRQWVTDVVKAL 204 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + L + L + Sbjct: 205 PRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLSEYLTEFPPVIKHPHGNGQKD 264 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 +++D G L +FC ++ Y+ E+R+ P S Sbjct: 265 KPVDWAAAEALLTCDRSVDVVDWAKPGYTAGSRQLYEFCTRRLRYFDEKRNDPTADALSG 324 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 325 LSPWLHFGQISAQRCALEVQRYTSMHKASADAFCEE---AIVRRELADNFCYYNEHYDSL 381 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W + + + L+ +Q T + ++A QL G MH LRM A Sbjct: 382 KGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 441 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408 +++ E + LDG + G W+ +D R Sbjct: 442 KKILEWTATPELALEYCILLNDKYSLDGRDPNGYVGCMWSIGGLHDQGWRERAIFGKIRF 501 Query: 409 FNPTIQG--KRFDPQGTFIRHW 428 N QG ++FD ++ W Sbjct: 502 MN--YQGCKRKFDVNA-YVMRW 520 >gi|302847741|ref|XP_002955404.1| cryptochrome [Volvox carteri f. nagariensis] gi|300259246|gb|EFJ43475.1| cryptochrome [Volvox carteri f. nagariensis] Length = 738 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 75/212 (35%), Gaps = 37/212 (17%) Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 R + + + L R+F+ + + I + W Sbjct: 538 IRARCTCRWSSSSVPAPAECDWLAMHLCIRDFFIFTTLKEGDAVLDERGI-MGLPVSWRN 596 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 D W QG TG P +DA MR+L GWM NR R AS L KDL VDWR G E F S Sbjct: 597 DMETFTRWAQGRTGLPFVDANMRELAVTGWMSNRGRQNVASLLTKDLGVDWRWGAELFES 656 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 L+D D+A N W + A GND R F Q Sbjct: 657 LLVDCDVAVNYCNWNYFAGIGNDPRN--RHFKTVTQ------------------------ 690 Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHK 464 P + + L +YP P+VD Sbjct: 691 ----PWAMTAEEAEQYSFVLGRDYPFPLVDPA 718 >gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC 33030] Length = 179 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 7/180 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + T + L W R+DLR+TDN AL A + V+ +FI E + A + + Sbjct: 1 MVSPTPQPLALAWFRDDLRLTDNAALTWAAQH--GHVVGLFIFE-EIDAARPLGAAAAWW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 S+ ++ L+Q+G+ D E + + T + +NR+Y + D Sbjct: 58 QRESVRKLHADLAQRGVHLIIEH----GDPREIIPRIAAELGATAVTWNRRYHLLFRDVD 113 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 L++ L S +L P ++ + ++V+TP+ KA L+ A P Sbjct: 114 AELKRTLAQSCEVTSHPGYLLNEPWTVQTGSGTPFRVFTPYGKASQSMLIDAPPTPSLSP 173 >gi|163840007|ref|YP_001624412.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] gi|162953483|gb|ABY22998.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC 33209] Length = 230 Score = 96.4 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 13/201 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 VWLR++LR+TDN AL AC V+ ++ + +++ SL + Sbjct: 21 VWLRDNLRLTDNPALAKACATGPTAVL--YVLDEVSEGIRPLGGATRWWLHHSLQNLAAE 78 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 +++ G + ++ E + + +F+NR+Y E D L+ L Sbjct: 79 IAELGGSLILRR----GNAAEIVPEVAQKTGAEAVFWNRRYGGAERAIDSELKSALTKAD 134 Query: 132 ICKSFDD-------SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + P G+ + YKV+TPF +A ++ + L Sbjct: 135 FTVQSFQANLLFEPWTIQPKGAGPAESSAHYKVFTPFWRACQESAEPRQPLTRIESFAGL 194 Query: 185 TGPVTPSNIPRFFDYPFQAID 205 T P + Sbjct: 195 TAPSDVLDDWGLLPSKPDWSH 215 >gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1] Length = 464 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 74/414 (17%), Positives = 135/414 (32%), Gaps = 38/414 (9%) Query: 11 LVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A ++ V+ VF T E RQ F+ L + Sbjct: 22 VYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-------- 119 ++ SLS+K I + + D E + + L + + + Sbjct: 79 LEVSLSRKKIPSFFLR----GDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI 134 Query: 120 -DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 E + V C + + + L N V +L + Sbjct: 135 SIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGA 194 Query: 179 VPAIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 L+ + F GE+ A ++ F +++ Y Sbjct: 195 GMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGA 254 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P S LSPYL G +S ++ +++ + K LIW+E Sbjct: 255 LRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEI----LIWKEISD 310 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTI 346 + + P + F W ++ + + ++ G T P+ +A+ +L + Sbjct: 311 NFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLST 370 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 G MH +RM A +++ + E LDG + G W+ Sbjct: 371 GKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIG 424 >gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis] gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis] Length = 159 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W R DLR+ DN AL A N+D VF+ + S + F+ L + S Sbjct: 10 HWFRKDLRLHDNPALKDALDNAD-CFYGVFVL--SNFHPSITSGNRWKFLLQCLQDLNNS 66 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 L + G +E +VTKL + Sbjct: 67 LEELGSKLIILT----GSPVEIFPKLLHSLKVTKLTFE 100 >gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 341 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 14/236 (5%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-REFYRHLM 295 Q S++SPYLS G LSPR+ + L+ + L L R Y H M Sbjct: 3 MYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRDYWHWM 62 Query: 296 AFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P+ P E+ +W D ++Q W G TG P DAAMR+L T G++ + Sbjct: 63 GLRYGTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAH 122 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410 R A L + DWR+G E+ LD D G + + + +D R + Sbjct: 123 EGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEPVR--S 180 Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460 D G +++ WLP L+ +P YIH PH + L YP P+ Sbjct: 181 VHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 236 >gi|167837240|ref|ZP_02464123.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis MSMB43] Length = 148 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%) Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++ ++L+EL WREF +P + + + + W D Sbjct: 1 MAFRRGRAHRAATQADLDTFLSELGWREFCWAQPYRFPDLPR-RSLRHTLDGMPWRDDPA 59 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 L AW++G TG+P +DA MR+L G MHNR R + SFLVK LL+DWR+G+ +F L+ Sbjct: 60 ALAAWRRGATGYPFVDAGMRELRATGGMHNRARTVCTSFLVKHLLIDWRVGDAWFRDTLV 119 Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 D D + PYFRIFNP QG+RFDP G ++R Sbjct: 120 DAD-----------------AAPYFRIFNPVAQGRRFDPDGAYVRR 148 >gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica] Length = 361 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 96/287 (33%), Gaps = 20/287 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLL 66 L R D R+ DN AA SD K+I FI TPEQ S F+ SL Sbjct: 7 ALFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLK 65 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + K L K +F + + + + V ++ N Y +RD +E Sbjct: 66 DLDKQLEGKLSLF-------YGANTVVVADLISEFGVDAVYVNADYTPYSKKRDADIEAI 118 Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + PG I+ K F +++ + + + + ++ Sbjct: 119 CDEHQVPFVSSHDMCLVDPGEIVIKEG--TKFEPSFFNKVMELKTRKSEAAPEISSEKVK 176 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGE-----QNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + ++ + G KF K+ R+ + Sbjct: 177 KSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREGTFPK 236 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 T++L+ YL G +S R+ ++ +LI W++ Sbjct: 237 MKTTELAAYLRFGCVSTREVVEEFEKLNKRMLITQTIRRDYWVHMFH 283 >gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae] gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae] Length = 538 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 146/441 (33%), Gaps = 34/441 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 99 IYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 155 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ + I F +++ + + ++V + + + + K L Sbjct: 156 VEQQCRELDIPFHLL----LGPAVDRIPEFVKSRKVGAVICDFAPLRVPRKWVDDVVKAL 211 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184 V D ++P + + + L + L + + R Sbjct: 212 PKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFPPVVKHPHGTGCRK 271 Query: 185 TGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 PV + + + G + A L +FC ++ + ++R+ P S Sbjct: 272 VDPVDWTAAYEMLECDKSVDEVDWAKPGYKAACKQLYEFCSRRLRQFNDKRNDPLADAIS 331 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ ++ + + + + Y S+ Sbjct: 332 GLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAIVRRELADNFCYYNEHYDSLKG 391 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + T + ++ T + ++A QL G MH LRM A Sbjct: 392 LSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYDDLWNSAQLQLVREGKMHGFLRMYWAKK 451 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIF 409 +++ + E + LDG + G W+ G + + R Sbjct: 452 ILEWTETPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG-GVHDMGWKERSIFGKIRYM 510 Query: 410 NPTIQG--KRFDPQGTFIRHW 428 N QG ++FD F+ + Sbjct: 511 N--YQGCRRKFDVNA-FVIRY 528 >gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057] Length = 193 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 5/182 (2%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 MS L+W R DLRI D+ AL+ A + + I +PEQW+QH + + F Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQ--GPSLGLVILSPEQWKQHADAPIKISFYLRQ 58 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +QK LS I + + ++ + + + ++ N + +NE++RDK ++ Sbjct: 59 LRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQ 118 Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 L H F D + P SI N + Q Y+V++ F+KA L + L + Sbjct: 119 DYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNK 178 Query: 184 LT 185 Sbjct: 179 QN 180 >gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans] gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans] Length = 555 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 129/403 (32%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVP---AIR 183 V D ++P + + + L + L + Sbjct: 231 PQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQHPHGTGCKN 290 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + G + A L +FC ++ ++ ++R+ P S Sbjct: 291 VKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ + E + LDG + G W+ Sbjct: 468 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510 >gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster] Length = 640 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 133/403 (33%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 203 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 259 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 260 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 315 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184 V D ++P + + + L + L + R + Sbjct: 316 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKN 375 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V S + + + G + A L +FC ++ ++ ++R+ P S Sbjct: 376 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 435 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 436 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 492 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 493 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 552 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ E + LDG + G W+ Sbjct: 553 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 595 >gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus propionicus DSM 2032] gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 122/435 (28%), Gaps = 23/435 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ R DN AL A + + + F P RQ F L + Sbjct: 13 LYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDAT---LRQYDFFLNGLEE 69 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +SL++ I D E + C + + + + + + + + Sbjct: 70 TARSLAEANIPLILRS----GDPAEEMVRLCTELTPALVATDFDPLRVKRQWLRTVTGHV 125 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V + V S + R V L+ P L G Sbjct: 126 RCPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPHPHAWPTLPGS 185 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + +P + A + QR+ P S LSP Sbjct: 186 LDFPALRARLRVDRSVQPVSWPRSGEAAAWDTLDTFLRERLAGYGQRNDPNQSVCSNLSP 245 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G++S + + + + + F H + + Sbjct: 246 FLHFGMISSHAIVLEIGRRGLHGEVVDSFIEELVVRRELADNFCLHTPDYDQISGFPEWA 305 Query: 308 IPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + ++ + + T P+ +AA QL G M +RM A +++ Sbjct: 306 QRTLARHRHDPRPYVYDDAQFDRAQTHDPLWNAAQHQLVASGKMAGYMRMYWAKKILEWS 365 Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS----TGNDSVP---YFRIFNPTIQG 415 LDG + G W+ G P R + Sbjct: 366 EDPAEALRIAIWLNDRYALDGRETNGYSGIAWSIGGVHDRGWTERPIFGTIRSMSEAGCR 425 Query: 416 KRFDPQGTFIRHWLP 430 ++FD +I W P Sbjct: 426 RKFDVN-RYIHTWTP 439 >gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL J2-003] Length = 282 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 115/295 (38%), Gaps = 20/295 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR++DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNTG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + F + +E L K+++NR RD+ + Sbjct: 57 KQEVDK-----TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I L + + YK++TP+ K + + + + Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P +F + P+ GE+ A L F K V Y + RD P + TS LS Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 YL G +S R W L+E G + EL WR+FY + +P+ Sbjct: 230 RYLRTGEISVRTIWQALQENEA------TEGRAIFEKELCWRDFYNMIYVSFPNQ 278 >gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba] gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba] Length = 535 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 98 VYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFMMGGLQE 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 155 VEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVICDFAPLRLPRQWVENVSKAL 210 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 211 PKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRHPFGTGCKN 270 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + + ++ G + A L +FC ++ ++ ++R+ P S Sbjct: 271 VNAVDWLAAYASLQCDMEVEEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ S ++ RE + + Sbjct: 331 GLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEE---AIVRRELADNFCFYNDQYDS 387 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 388 LKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 447 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ E + LDG + G W+ Sbjct: 448 AKKILEWTATPEEALEYAILLNDKYSLDGRDPNGYVGCMWSIG 490 >gi|224060613|ref|XP_002190613.1| PREDICTED: similar to CPD photolyase-like [Taeniopygia guttata] Length = 697 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 69/431 (16%), Positives = 137/431 (31%), Gaps = 29/431 (6%) Query: 20 ITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 + DN A A + + F P+ R F+ L +V + ++ Sbjct: 272 VADNWAFLYAQRLALKQELPLHVCFCLVPKFLGAT---IRHYRFMLRGLQEVAEECAELN 328 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 I F + + L ++ ++ V L + + + +++RL V Sbjct: 329 IPFHLL----LGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERLPEDVPFAQV 384 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 D ++P + A + + +P P + + + Sbjct: 385 DAHNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEACY 444 Query: 197 FDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 G + +L+ F E++ + R+ P S LSP+L G Sbjct: 445 SSLQVDHTVKEVEWATPGTAAGMAVLKSFIAERLKSFSTHRNDPNKAALSNLSPWLHFGQ 504 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 +S ++ ++++ + + + E + + Y SV + T K Sbjct: 505 VSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLK 564 Query: 314 IEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + L + ++ G T P+ +AA Q+ G MH LRM A +++ Sbjct: 565 LHAKDKRPYLYSLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTRSPEE 624 Query: 371 IGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFD 419 + LDG + G W+ G + R N ++FD Sbjct: 625 ALQFAIYLNDRYELDGRDPNGYVGCLWSI-CGIHDQGWAERPIFGKIRYMNYAGCKRKFD 683 Query: 420 PQGTFIRHWLP 430 F R + P Sbjct: 684 VD-QFERRYTP 693 >gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia] gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia] Length = 555 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 129/403 (32%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVP---AIR 183 V D ++P + + + L + L + Sbjct: 231 PQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQHPHGTGCKN 290 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + G + A L +FC ++ ++ ++R+ P S Sbjct: 291 VKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ + E + LDG + G W+ Sbjct: 468 AKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510 >gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4] gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris DP4] Length = 473 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 68/418 (16%), Positives = 125/418 (29%), Gaps = 35/418 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R DN AL A + A + V+ +P + RQ HF+ + Sbjct: 24 LYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 80 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L + GI F Q D + + + + + + + + L Sbjct: 81 TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVHEAL 136 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + V S + + L + L + + Sbjct: 137 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 195 Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + P P+ + + + E+R+ Sbjct: 196 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 255 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P S LSPYL G+++ ++ R+ S ++ RE + Sbjct: 256 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 312 Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P F W + + + A ++ T P+ +AA QL G +H Sbjct: 313 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAAQTQLMRCGVIH 372 Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +RM A L+ RI LDG ++ G W+ G P+ Sbjct: 373 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 429 >gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327] gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327] Length = 459 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 76/447 (17%), Positives = 133/447 (29%), Gaps = 39/447 (8%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W+ D R+ N AL A ++ + VF P R F++ L Sbjct: 24 TVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGAPM---RHYDFMFRGL 80 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +V+ L + G + + + + L Y + L + + + Sbjct: 81 REVETRLRELG----VLFTALYGEPGKTLPEYAASRNAGALVADFSPLKLVRDWKQEVAP 136 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L + +++ + + + L L +L Sbjct: 137 GL-SCTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEPELQHQPDKLP 195 Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 PV + P GE A LR F ++ Y ++R+ P S Sbjct: 196 PPVEWDEMETLLKVDRSVKAVPALEPGEAAAELHLRDFVDGRLSRYADERNDPNSGAVSG 255 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G LS E + I RE + + Sbjct: 256 LSPYLHFGQLSA----QHAAFEAARSKASEANREAFVEELFIRRELSENYCYYNERYDSF 311 Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W +K A ++Q T P+ +AA QL G +H +RM A Sbjct: 312 DGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPLWNAAQTQLLETGVIHGYMRMYWA 371 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ + M LDG + G W+ G P+ R Sbjct: 372 KKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIG-GLHDRPWVERPIYGTIR 430 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNN 434 N ++FD + ++ E++ Sbjct: 431 YMNANGCKRKFD-----VPRYIAEMSG 452 >gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans ASO3-1] Length = 448 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 137/402 (34%), Gaps = 28/402 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D RI DN AL A + + VF + RQ F+ L + Sbjct: 22 IYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADGFLQ---AGLRQFDFMLRGLHE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 I + ++ L +Y + R + F ++ +++ Sbjct: 79 CAGVAESLNIPLDLVR----GEAGLVLPAYLEKHRAS--FLVMDFDPLRIKKSWQKAVLD 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185 + + D ++P S + P ++ ++ D++ P PA T Sbjct: 133 KTGIPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLEDYPDVKPHPYPAQAGT 192 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 G + G A +L F ++ Y EQR+ P +Q S L Sbjct: 193 GVDPDGLLQEMDLDKTITPVRWLSPGPAGAGEVLDDFMAHRLSLYHEQRNDPNMQVLSNL 252 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G S ++ ++K++ L P ++L ELI R Y Sbjct: 253 SPYLHFGHTSAQRVALQVKKQ----LDTPVQSREAFLEELIVRRELSDNFCHYNQNYDNF 308 Query: 306 PFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +P + + + QA +QG T P+ +AA ++ G MH +RM A Sbjct: 309 QGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEMVKSGKMHGYMRMYWA 368 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ + + LDG + G W+ Sbjct: 369 KKILEWSRSPEQAIDTAIYLNDKYELDGRDPNGYTGIMWSIG 410 >gi|161138100|gb|ABX58022.1| cryptochrome 2 [Triticum aestivum] Length = 76 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%) Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +YF LLD D+ S+ GWQ+ + + D R+ NP +QG+++DP G ++R W+P Sbjct: 1 WGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60 Query: 431 ELNNVPTQYIHAPHSW 446 EL +P ++IH P Sbjct: 61 ELARMPGEWIHHPWDA 76 >gi|161138098|gb|ABX58021.1| cryptochrome 2 [Triticum aestivum] Length = 76 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%) Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +YF LLD D+ S+ GWQ+ A D R+ NP +QG+++DP G ++R W+P Sbjct: 1 WGMKYFWDVLLDADIESDILGWQYIAGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60 Query: 431 ELNNVPTQYIHAPHSW 446 EL +P ++IH P Sbjct: 61 ELARMPGEWIHHPWDA 76 >gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta] gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta] Length = 554 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 130/400 (32%), Gaps = 20/400 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFMMGGLQE 174 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 175 VEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 231 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRHPYGTGCKN 290 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + + ++ G + A L +FC ++ ++ ++R+ P S Sbjct: 291 VNVVDWSAAYASLQCDMEVGEVQWATPGYKGACQQLYEFCSRRLRHFNDKRNDPTADALS 350 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--- 300 LSP+L G +S ++C ++ + + + + Y S Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKG 410 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + L+ ++ T + ++A QL G MH LRM A Sbjct: 411 LSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKK 470 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ R E + LDG + G W+ Sbjct: 471 ILEWTATPERALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510 >gi|47223395|emb|CAG04256.1| unnamed protein product [Tetraodon nigroviridis] Length = 136 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 1/102 (0%) Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 L AWK+G TG P +DA MR+L T G+M NR R ASFL KDL +DWR+G E+F S Sbjct: 1 MRLFDAWKEGKTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESL 60 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421 L+D D+ SN G W ++A GND R FN QG +D Sbjct: 61 LVDHDVCSNYGNWLYSAGIGNDPRE-NRKFNMIKQGLDYDSN 101 >gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299] gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299] Length = 579 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 73/406 (17%), Positives = 133/406 (32%), Gaps = 31/406 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W D R+ DN AL AC ++ A V+ VF G ARQ F+ L + Sbjct: 24 IYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTRFL---GAGARQFCFMLKGLRE 80 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD------- 120 ++++L K I F + D + + + + + ++ Sbjct: 81 MEQALLAKNIKFVLLE----GDPSLTVPRFAKECGASLIVADQSPLRLGRTWRVAIASSV 136 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + ++ S L G+ + +V+ Sbjct: 137 DCPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYPEFLVEFPETPVVKETWPCAAAA 196 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A+ G + I R + + + + + A H + + Y E R+ PA Sbjct: 197 ALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAAHATLEHFLTRRLKYYEHRNDPAKP 256 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSPYL G +S ++C E K+ ++ RE + + P Sbjct: 257 QALSGLSPYLHFGQISAQRC---ALEARRYAKSSNKAVDVFLEELIVRRELADNFCWYSP 313 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA-------WKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + K + S +A ++ G T + +AA ++ G MH Sbjct: 314 KYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQFENGETHDDLWNAAQLEMVHGGKMHGF 373 Query: 353 LRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +RM A +++ + E LDG S G W+ Sbjct: 374 MRMYWAKKIMEWTESPDQALEFAIHLNDKYQLDGRDPSGYVGCMWS 419 >gi|300934396|ref|ZP_07149652.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM 45100] Length = 265 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 7/158 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQVQ 69 LVW R+DLR+ DN AL A S V+ VFI PE + A + F + ++ + Sbjct: 11 LVWFRDDLRLRDNPALTWAA--SRGPVVGVFILESPEATHARPLGAAAAWFQHKAIRGLH 68 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L+ + D E + S Q + R ++ + Sbjct: 69 DELAAHNVPLLL----AAGDPREVIPSLAAQLAGAVTWSRRYHQPFIDLDAHVKTALANQ 124 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 KS +L P I Y+ +TPF + + Sbjct: 125 GTEAKSHSGYLLSEPWMIRTGQGTPYRKFTPFARNVED 162 >gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster] gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster] Length = 535 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 98 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 155 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 211 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKN 270 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + + ++ G + A L +FC ++ ++ ++R+ P S Sbjct: 271 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 331 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 387 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 388 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 447 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ E + LDG + G W+ Sbjct: 448 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 490 >gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula] Length = 268 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467 G +FDP G ++R WLPEL +PT++IH P + + +L NYPLPIV A Sbjct: 3 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKV 62 Query: 468 --HHTLNQYYA 476 L++ + Sbjct: 63 RLEEALSEMWQ 73 >gi|293605132|ref|ZP_06687523.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816456|gb|EFF75546.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 115 Score = 93.7 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 3/111 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L+WLR DLR+ DN AL AA N V A+F+A P+QWRQHG + + F +L Sbjct: 1 MNT-LLWLRTDLRMHDNPALAAAREN--GTVTALFLAAPDQWRQHGDAPAKVDFWLRNLH 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ + L ++GI + +++ + E + ++C +T++ N ++ INE Sbjct: 58 ELSRDLGERGIPLKLLTVADWSKAPEAIAAFCQAHAITQVHANTEWAINER 108 >gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster] gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster] gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster] gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct] gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct] Length = 555 Score = 93.7 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 131/403 (32%), Gaps = 26/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 174 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 175 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + + + + + + P Sbjct: 231 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKN 290 Query: 188 VTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + + ++ G + A L +FC ++ ++ ++R+ P S Sbjct: 291 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 350 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C ++ + ++ RE + + Sbjct: 351 GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEE---AIVRRELADNFCFYNEHYDS 407 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 408 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 467 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 A +++ E + LDG + G W+ Sbjct: 468 AKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIG 510 >gi|161138102|gb|ABX58023.1| cryptochrome 1a [Triticum aestivum] gi|161138104|gb|ABX58024.1| cryptochrome 1a [Triticum aestivum] gi|161138106|gb|ABX58025.1| cryptochrome 1a [Triticum aestivum] Length = 76 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 33/76 (43%), Positives = 45/76 (59%) Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +YF LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLP Sbjct: 1 WGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLP 60 Query: 431 ELNNVPTQYIHAPHSW 446 EL +PT++IH P Sbjct: 61 ELARLPTEWIHHPWDA 76 >gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii DSM 5219] Length = 457 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 60/399 (15%), Positives = 127/399 (31%), Gaps = 18/399 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 + L W+++ R+ N AL A ++ ++ +F T + + R F+ Sbjct: 19 TYVLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCLT----KYPQANLRHYTFMLEG 74 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+Q +KSL + GI F + + ++ + + + + Q R + Sbjct: 75 LVQTKKSLEKLGIQFVMLK----GNPVDVVHEFARDASLLVTDQDYQKLQRGWRENLAAS 130 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + V A + + + + L + + + Sbjct: 131 ISCPFAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFVHPFELSALANSSLEIDQD 190 Query: 185 TGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 + + P + G A L F ++ Y E+R+ P + Sbjct: 191 SLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSDFIAHRLGDYDEKRNDPNLDFL 250 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S +SPYL G +SP + ++++ EL Y Sbjct: 251 SGMSPYLHFGQISPLEIALKVQDA-KKGGSTAYMEELVVRRELAMNFVYYDKDYDSLDCL 309 Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + ++ + + + ++Q T P +AA R++ G MH +RM + Sbjct: 310 PDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDPYWNAAQREMVLTGKMHGYMRMYWGKKI 369 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 ++ + + LDG + G W Sbjct: 370 LEWTDSPEQAYQIALYLNNKYELDGRDPNGYAGIAWCFG 408 >gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeobacteroides DSM 266] Length = 468 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 76/438 (17%), Positives = 132/438 (30%), Gaps = 33/438 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N AL A ++ VF P R F+ L + Sbjct: 34 IYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPSFLDAPF---RHYDFMLKGLEE 90 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K+L + I F + + + Y Q + + K L Sbjct: 91 TSKALERINIPFMLLE----GEPDTEISRYACQSEAGAVVTDFSPLNISRNWKKKAADIL 146 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + V S + + + LP P + P Sbjct: 147 DIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVPFPTILPLPAPHVHHRSP 206 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 R GE A L F K ++ Y R+ P SQLSP Sbjct: 207 DWKQVRERLQKDRSVPPVNRIAPGETAAAESLENFIKSRLSGYATARNDPNSNALSQLSP 266 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +S + + K +I RE + + PS + Sbjct: 267 YLHFGQISA----QHVALRVAESRAPQKDKTAFLEELIIRRELSDNFCNYNPSYDRFEGI 322 Query: 308 IPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W ++ + + + + +++ T + +AA +L G +H +RM A + Sbjct: 323 PAWAKQTLLLHGQDKREYLYTIDVFEKAATHDKLWNAAQSELVQSGKIHGYMRMYWAKKI 382 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFN 410 ++ E LDG + G W+ G P+F R N Sbjct: 383 LEWSSSPPEAFEMAIYLNDRYALDGRDPNGYAGVAWSIG-GLHDRPWFERPVYGNIRYMN 441 Query: 411 PTIQGKRFDPQGTFIRHW 428 + ++FD + +I + Sbjct: 442 ASGCRRKFDVE-RYISRF 458 >gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM 13031] Length = 450 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 147/435 (33%), Gaps = 28/435 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N AL A ++ + VF P R F+ L + Sbjct: 21 IYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPSFLNAP---LRHYDFMLKGLHE 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+++L + I F Q + L + + + + + + + L Sbjct: 78 VERALRRLNIPFYLVQ----GEPEIELPRFAREMKAGAVVTDFSPLKISREWKRRVGAHL 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++P + + P K+L+ L+ + P+ A + P Sbjct: 134 --PLPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTGFPQLEPLEATTESHP 191 Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V S+I + GE+ A + L F ++++ Y E R+ P S LS Sbjct: 192 VDWSSISCSLKADHRVAPVEWLKPGEEAAANCLDTFLEKRLSSYAELRNDPNSGVLSNLS 251 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G +S + R+ E + + + + + + + Sbjct: 252 PYLHFGQISAQYIALRVSESRMPDESRSAFLEELIVRRELSDNYCFYNDRYDSFDGSPTW 311 Query: 307 FIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + +L A + T + +AA +L T G +H +RM A +++ Sbjct: 312 AKESLMNHRNDHREYLYTADEFATAKTHDRLWNAAQLELVTTGKIHGYMRMYWAKKILEW 371 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTI 413 + E LDG + G W+ G P+F R N + Sbjct: 372 SESAEQAFETAMALNDRYALDGRDPNGYAGVAWSIG-GVHDRPWFERPVYGKIRYMNASG 430 Query: 414 QGKRFDPQGTFIRHW 428 ++FD +I + Sbjct: 431 CARKFD-VARYIARF 444 >gi|218514415|ref|ZP_03511255.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3] Length = 105 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLR+ DNKAL AA H S +I+++I PE + A QS +++ SL + Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 SL ++ + +++ L S Q +F+ Sbjct: 69 SLRKR----RGRALVASGEALGVLRSLIRQSDADAVFW 102 >gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae] gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae] Length = 521 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQV 68 + W R LR DN +L A S V VF+ + + I A Q F+ L + Sbjct: 69 IHWFRKGLRFHDNPSLLHALRTS-RHVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQDL 127 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 L G+ + ++ + + + +T+L ++ + E Sbjct: 128 DTRLRAYGLRLFVAR----GNAEAFFAEHFRKWNITQLTHDVETEHYHRF 173 >gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 489 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 64/404 (15%), Positives = 131/404 (32%), Gaps = 23/404 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A + + +++ + S RQ HF+ L +V+ Sbjct: 50 VYWMSRDSRVQDNWALIYAQELAHTAKLPLYVVFCMTKSFNNASMRQFHFLIKGLEEVRV 109 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + L+ + + + + + + +L Sbjct: 110 ECQKLDITFVMLD----GSADLVLNDWVREHDICAVVCDFNPLRTVREWVSRIRDQLPDT 165 Query: 131 VICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P + ++ + + +R ++ L Sbjct: 166 VYFAQVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLECYLKPFPPVVRHEYRSSVVLDPC 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 T + A + P G +AL++L +F + + Y R+ P ++ Sbjct: 226 TTTHIDWQQLLASRDADVSVGPVDWIEPGYISALNVLARFIRCNLLKYKMSRNNPVLKTQ 285 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHLMAFYPS 300 S +SP+ G +S ++ L ++ + RE + + + Sbjct: 286 SNMSPFYHFGQISVQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYNSN 345 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQ------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 W ++ S Q ++ T + +AA RQL G +H LR Sbjct: 346 YDTFLGAPNWAKETLVIHKSDSRQYIYSLLQFEHNQTHDELWNAAQRQLRNEGKIHGYLR 405 Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 M A +++ + E LDG + G W+ Sbjct: 406 MYWAKKILEWTQTPEQALEYSIYLNDRYSLDGRDPNGYVGCMWS 449 >gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster] Length = 536 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 134/403 (33%), Gaps = 25/403 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ R F+ L + Sbjct: 98 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFMMGGLQE 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ I F ++E L + + + + + + + + K L Sbjct: 155 VEQQCRALDIPFHLL----MGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAIRL 184 V D ++P + + + L + L + R + Sbjct: 211 PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKN 270 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V S + + + G + A L +FC ++ ++ ++R+ P S Sbjct: 271 VNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS 330 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++C L+ + S ++ RE + + Sbjct: 331 GLSPWLHFGHISAQRCA--LEVQRFRGGQHKASADAFCEETIVRRELADNFCFYNEHYDS 388 Query: 304 GKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W + + + L+ ++ T + ++A QL G MH LRM Sbjct: 389 LKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYW 448 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ + E + LDG + G W+ Sbjct: 449 PQKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 491 >gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1] Length = 478 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 35/418 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R DN AL A + A + V+ +P + RQ HF+ + Sbjct: 24 LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 80 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L + GI F Q D + + + + + + + + L Sbjct: 81 TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREAL 136 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + V S + + L + L + + Sbjct: 137 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 195 Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + P P+ + + + E+R+ Sbjct: 196 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 255 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P S LSPYL G+++ ++ R+ S ++ RE + Sbjct: 256 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 312 Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P F W + + + A ++ T P+ +A QL G +H Sbjct: 313 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAGQTQLMRCGVIH 372 Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +RM A L+ RI LDG ++ G W+ G P+ Sbjct: 373 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 429 >gi|225470301|ref|XP_002266483.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 485 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 36/444 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V IA + G ARQ F+ L + + Sbjct: 25 VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 84 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L Q I F Q ++IE + ++ + + L + + + + KR+ Sbjct: 85 DLEQTLQIPFFLFQ----GEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKRVGK 140 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188 +V D ++P + L+ + L+ P T Sbjct: 141 KVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQS 200 Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + + + F +++ Y R+ P G Sbjct: 201 IDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPG 260 Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL G +S ++C E + P++ ++ RE + + P Sbjct: 261 ALSGLSPYLHFGQISAQRC---ALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPR 317 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + W K + S + T P+ +A+ ++ G MH +R Sbjct: 318 YNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFMR 377 Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY------ 405 M A +++ +DG + G W+ G + Sbjct: 378 MYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWQERQIF 436 Query: 406 --FRIFNPTIQGKRFDPQGTFIRH 427 R N ++FD G +I H Sbjct: 437 GKIRYMNYAGCKRKFDVDG-YIAH 459 >gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi] Length = 529 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 57/400 (14%), Positives = 123/400 (30%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D+R+ DN A A ++ + F P R F+ L + Sbjct: 93 LYWMSRDVRVQDNWAFLFAQKLALKNELPLHVCFNLVPRFLDAT---IRHFKFMLNGLEE 149 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K + I F + + + ++ + R+ + + ++ + + K L Sbjct: 150 VAKECEKLNIHFHLLRGNAGQNV----PAFVKKHRIGGVVCDFSPLRVPMQWVEDVRKAL 205 Query: 128 QHRVICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V D ++P L +A + + ++ + + Sbjct: 206 PMEVPLCQVDAHNIVPVWVTSEKLEYAARTIRNKVNNNLGTFLTPFPPVIKHPHKASFQA 265 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P I G + L+ F ++++ + +R+ P S Sbjct: 266 EPIDWPQVIDSLEVDRTVDEVKWATPGYTGGVATLQSFVEKRLGKFNAKRNDPTENALSN 325 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303 LSP+ G ++ ++ +K S ++ RE + + + Sbjct: 326 LSPWFHFGQIAVQRAVLAVKSHGKRHTESVASFCEE---AIVRRELADNFCFYNKNYDNL 382 Query: 304 ---GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + ++ + + T + ++A Q+ G MH LRM A Sbjct: 383 KGAYDWARKTLDDHRKDRRVYCYTREELETAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 442 Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWA 395 +++ Y + LDG + G W+ Sbjct: 443 KKILEWTKSPEEALETAIYLNDRFNLDGRDPNGYVGCMWS 482 >gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera] Length = 480 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 63/397 (15%), Positives = 128/397 (32%), Gaps = 19/397 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ D+RI DN AL A + + + I S R F+ L +++K Sbjct: 43 LYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIEK 102 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + I F + + + + + + + ++K L Sbjct: 103 ECKKLNINFHLLH----GEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNLPKD 158 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGP 187 + D ++P + K ++ + ++ + Sbjct: 159 IPICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPYTTKEKFEKN 218 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + G +N + L F + ++ Y ++R+ P S LSP Sbjct: 219 NWKIALQNVEVDKSVKEITWAKPGYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSP 278 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 + G++S ++C +KE + KS +I +E + + + + Sbjct: 279 WFHFGMISVQRCILEIKEY---KKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGA 335 Query: 308 IPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PW + + K + L + T + +A Q+ TIG MH LRM A + Sbjct: 336 YPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKKI 395 Query: 362 VKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWA 395 ++ + +DG + G W+ Sbjct: 396 LEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWS 432 >gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans] Length = 510 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 63/402 (15%), Positives = 133/402 (33%), Gaps = 25/402 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + + + F P+ + R F+ L + Sbjct: 74 VYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKYI---HTTLRHYKFMLTGLEE 130 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + F + +E+L + + ++ + +++ L Sbjct: 131 VSEECEDLNVSFHLLKGPAHQSLVEFLKDV----DAATVVCDFSPLRLPLQWLEEIKEVL 186 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + D ++P + + L + L + R Sbjct: 187 PTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEFPPLIRHKYPNRKPS 246 Query: 187 PVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +D + G +NA H L +FC+ ++ + ++R+ P I S Sbjct: 247 TKVNWKSVYNTLKCLKTVDEVASVKPGYKNACHQLLEFCQNRLKLFHDKRNDPNIDALSG 306 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ + G +S ++C +K + ++ RE + + + Sbjct: 307 LSPWFNFGQISIQRCILEIKTYEHKFKDSVAAFCEE---AIVRRELADNFCFYNQNYDNF 363 Query: 305 KPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W+ + + + L+ ++Q T + ++A QL G MH LRM A Sbjct: 364 QGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHDDLWNSAQLQLMREGKMHGFLRMYWA 423 Query: 359 SFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAAS 397 +++ E LDG + G W+ Sbjct: 424 KKILEWSKSPEDALEFSLLLNDRYSLDGTDPNGYVGCMWSIG 465 >gi|256828229|ref|YP_003156957.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM 4028] gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 70/438 (15%), Positives = 123/438 (28%), Gaps = 32/438 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R DN L A S V +F P+ A +F+ L + Sbjct: 20 LYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPDFAEAT---AVHFNFLLDGLTK 76 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L ++ I F + + + VT R + + Sbjct: 77 TAQTLRRQNIPFFALSGIPGLEVANFARTLKASLVVTDFDPLRIKAQWHKDLLSAWNQAV 136 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V+ + L ++ L + L + + + Sbjct: 137 HEVDSRNIVPARVVSDRREFMARTL-----RPKIKRLLGEFLDEFPVLPMHPHPWPTAVS 191 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + R + + L + R+ P S LS Sbjct: 192 APDFSSLRHKIRDDGRRQALRVEPGEQPARDLLCHFLQNKLPVYANRNDPNQDVCSSLSA 251 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G+LS ++ + + ++ RE + P + F Sbjct: 252 HLHFGMLSAQRAALETQACGLAGENVDAFLDEL----IVRRELSDNFCLHTPGYDTEEGF 307 Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W ++ T P+ +AA Q+ G MH LRM A + Sbjct: 308 PAWAKESLHKHLRDPRPVIYSPEELEAARTHDPLWNAAQTQMLRSGKMHGYLRMYWAKKI 367 Query: 362 VKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAAS----TGNDSVPYF---RIFNP 411 ++ L R LDG ++ G W+ G P F R N Sbjct: 368 LEWSLSAADALRTAIRLNDRYSLDGRDSNGYTGIAWSIGGVHDRGWTERPIFGKIRFMNL 427 Query: 412 TIQGKRFDPQGTFIRHWL 429 ++FD F+R W+ Sbjct: 428 AGARRKFDVD-RFVRSWI 444 >gi|50752305|ref|XP_422729.1| PREDICTED: similar to photolyase [Gallus gallus] Length = 499 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 73/438 (16%), Positives = 132/438 (30%), Gaps = 29/438 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + F P R F+ L + Sbjct: 67 LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLDAT---IRHYGFMLRGLRE 123 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K ++ I F + L S+ ++ V L + + + +++RL Sbjct: 124 VAKECAELDIPFHVL----LGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERL 179 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + L + L + Sbjct: 180 PEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPPVIRHPHPPPNPP 239 Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + G L +L+ F E++ + QR+ P S Sbjct: 240 EPIAWDACYSSLQVDRTVTEVAWATPGTAAGLAMLQSFITERLKSFGSQRNDPNKAALSN 299 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301 LSP+ G +S ++ +++ + + E + + Y SV Sbjct: 300 LSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 359 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + L +Q T P+ +AA Q+ G MH LRM A + Sbjct: 360 YDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQMVREGKMHGFLRMYWAKKI 419 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN--------DSVPYFRIFN 410 ++ + LDG + G W+ G D R N Sbjct: 420 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSI-CGIHDQGWKERDVFGKIRYMN 478 Query: 411 PTIQGKRFDPQGTFIRHW 428 ++FD F R + Sbjct: 479 YAGCKRKFDVD-QFERRY 495 >gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str. Hildenborough] gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 35/418 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R DN AL A + A + V+ +P + RQ HF+ + Sbjct: 20 LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRGMRG 76 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++L + GI F Q D + + + + + + + + L Sbjct: 77 TAETLREHGIPFFLLQ----GDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREAL 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + V S + + L + L + + Sbjct: 133 ACPLHEVDGRNVVPCRMASDKREY-AARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKA 191 Query: 188 VTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P + P P+ + + + E+R+ Sbjct: 192 PVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYEKRND 251 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P S LSPYL G+++ ++ R+ S ++ RE + Sbjct: 252 PNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEEL---VVRRELADNFCL 308 Query: 297 FYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 P F W + + + A ++ T P+ +A QL G +H Sbjct: 309 HTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLWNAGQTQLMRCGVIH 368 Query: 351 NRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +RM A L+ RI LDG ++ G W+ G P+ Sbjct: 369 GYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLG-GVHDRPW 425 >gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM 2638] Length = 445 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 71/436 (16%), Positives = 136/436 (31%), Gaps = 32/436 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + W+ + R+ DN L A + KV I VF P R F+ + QV Sbjct: 23 VYWMSREQRVFDNWGLLHARELAGDKVPLIVVFCLVPSFLGAT---LRHYDFMLNGMQQV 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 +K L + G F E L ++ R + + + + + + +++ Sbjct: 80 EKDLRKLGYDFVLLS----GQPDETLPAFVSNIRAGAVVTDFDPLRIKQQWQENVGQKID 135 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 ++ + V + R + + L + + + + G Sbjct: 136 IPLLEVDGHNIVPARFVTDKREYG-----ARTIRPKIQRLLPEFLEEFPELASAEVKGEG 190 Query: 189 TPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + + + + P GE A L +F + Y E+R+ P + TS+ Sbjct: 191 FPVVDWKQVRSSIKVDETVGPVDLIPGESAAHAALDEFVTYGLGAYAEKRNDPNAEATSR 250 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-M 303 LS Y G L+P++ + + EL Sbjct: 251 LSAYYHFGQLAPQRAALEVAARPTGESVDSYLEELIIRRELSDNFCLHTPNYDSLDAAPE 310 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + ++Q T + +AA Q+ G+MH +RM A +++ Sbjct: 311 WAQKTLSEHSADRRAYLYSYEDFEQARTHSALWNAAQSQMVHSGFMHGYMRMYWAKKILE 370 Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412 LDG + G W+ G + R N Sbjct: 371 WSASAEEALSITIALNDRFELDGRDPNGYVGALWSIG-GVHDRGWKKRSVFGSIRYMNER 429 Query: 413 IQGKRFDPQGTFIRHW 428 ++FD ++R W Sbjct: 430 GCRRKFDVDA-YVRKW 444 >gi|156555630|ref|XP_001603285.1| PREDICTED: similar to DNA photolyase [Nasonia vitripennis] Length = 504 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 57/400 (14%), Positives = 126/400 (31%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A+ A + + F P+ R F+ +L + Sbjct: 58 VYWMFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLDAT---IRHYKFLLEALEE 114 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K + I F + + ++ + ++ + + + + ++K+L Sbjct: 115 VEKDCKELNINFHLLH----GEPNTAIINFVEKYKMGAVIADFFPLRLPLFWLEDIKKKL 170 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRL 184 ++ D ++P + + + + ++ + Sbjct: 171 PKKIPLCQVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPPVIKHPHTSDQKF 230 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + G + + L KF K ++ Y E+R+ P S Sbjct: 231 DKINWDTALDDVLVDKSVDKITWAKAGYKGGIAELDKFLKIRLRIYDEKRNNPIFNALSN 290 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G++S ++C K+ ++ ++ RE + + Sbjct: 291 LSPWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEE---AIVRRELSDNFCFYNEHYDSL 347 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W + + G T + +AA QL G +H LRM A Sbjct: 348 KGAYDWARETLNQHRNDKRDYIYTLNELENGLTHDDLWNAAEIQLVKEGKIHGFLRMYWA 407 Query: 359 SFLVKDLLVD---WRIGEEYFMSQLLDGDLASNNGGWQWA 395 +++ + +DG + G W+ Sbjct: 408 KKILEWTETPDDALKWSIYLNDKYSMDGRDPNGYVGCMWS 447 >gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti] gi|108882857|gb|EAT47082.1| DNA photolyase [Aedes aegypti] Length = 506 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 119/400 (29%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A ++ + F P+ R F+ L + Sbjct: 71 IYWMSRDARVQDNWAFLFAQKLALKNELPLHVCFSLVPKFLDAT---IRHYKFMLKGLEE 127 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K I F + + + + + + + ++ + + K L Sbjct: 128 VAKECESLNINFHMLTGM----AKDTIPKFVKTHNIGAVVCDFSPLRVPMKWVEDVRKSL 183 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIRLTG 186 V D ++P + + L Q Sbjct: 184 PAEVPLCQVDAHNIVPLWVTSEKQEYAARTIRNKVNNNLNTYLTQFPPVIKHPHKASFKA 243 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +D G + +L+ F ++++ + +R+ P S Sbjct: 244 DSIDWVKLLDTIEVDRTVDEVDWAVPGYTGGIGVLQSFVEKRLRKFNAKRNDPTDDALSN 303 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++C +K+ + ++ RE + + + Sbjct: 304 LSPWFHFGQISVQRCVLAVKKYGKGYSEGVAAFCEE---SIVRRELSDNFCYYNKNYDNL 360 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W + + + +Q T + ++A Q+ G MH LRM A Sbjct: 361 KGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHDDLWNSAQIQMVKEGKMHGFLRMYWA 420 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ E LDG + G W+ Sbjct: 421 KKILEWTKTPEEALETAIYLNDRYQLDGRDPNGYVGCMWS 460 >gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017] Length = 465 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 72/432 (16%), Positives = 144/432 (33%), Gaps = 20/432 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ V + G + R F+ L ++ Sbjct: 26 LYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGLMADYPGSNLRHYTFMLEGLQDTEQ 85 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L Q+GI F + ++E L ++ + V ++ + Sbjct: 86 ALIQRGIKFVMRYGNPDQIALELGKDASLVVCDRGYLRFQRQWRDNVAQNAPCQVVQVES 145 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + + + ++++ F VQ L + ++ L+ + Sbjct: 146 EVVVPVETASVKADYAARTIRPRIHRHLDRFLVPFASTPVQHSSLHLDLKSLDLSN-IEA 204 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 D + +F G A IL KF ++ Y + R+ P S +S YL Sbjct: 205 VLAKLPLDCSVPPVSSLFQGGTTRAKEILEKFLQKSFAIYADHRNQPQTDDVSYMSQYLH 264 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SP + + + ++ RE + + P W Sbjct: 265 FGQISP---LYLALQIQSMGNVPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNW 321 Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + L+ + T P +AAMR++ G+MHN +RM +++ Sbjct: 322 AKTTLDNHRHDPRTPCYSLEQLDESRTEDPYWNAAMREMKHTGYMHNYMRMYWGKKIIEW 381 Query: 365 LLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAAST---GNDSVPYF---RIFNPTIQG 415 + + +DG A++ G W G P F R + Sbjct: 382 TETPELAFQTALDLNNKYFIDGRDANSYTGVAWVFGVHDRGWRERPIFGTVRYMAASGLK 441 Query: 416 KRFDPQGTFIRH 427 ++ D G +I+ Sbjct: 442 RKCDIDG-YIKK 452 >gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM 11109] gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 67/400 (16%), Positives = 118/400 (29%), Gaps = 24/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + WL D R DN AL A + A + VF P + RQ F+ L + Sbjct: 23 VCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQATY---RQYDFMLKGLEE 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + ++L QK I F Q + + + Q R + + + + + RL Sbjct: 80 LTQNLGQKNIPFFLLQ----GEPAATIPMFLAQSRAGAVVSDFDPLRIKRQWKDQVLPRL 135 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S R + P Sbjct: 136 SIPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFLTEPRSIEIHPFRWPDSVPQ 195 Query: 188 VTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + ++ GE L F + + Y R+ P +G S LS Sbjct: 196 IDWRSVLASAAMDRSVPPVSWCQPGESAGRARLTSFIQLGLPRYHLSRNDPIREGQSDLS 255 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G ++ ++ ++ + ++ RE + P Sbjct: 256 PYLHFGQIAAQRVAWEVQRAVAPTEARQAFLEEL----IVRRELADNFCWHNPDYDRFSG 311 Query: 307 FIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F W ++ + ++ T P+ +AA ++ G MH LRM A Sbjct: 312 FPAWAQETLNKHRTDRRDYLYSLREFESARTHDPLWNAAQLEMLHRGKMHGYLRMYWAKK 371 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ E LDG + G W+ Sbjct: 372 ILEWTASPEEALEIALYLNNRYELDGRDPNGYAGVAWSIG 411 >gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii] Length = 612 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 68/407 (16%), Positives = 121/407 (29%), Gaps = 29/407 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W+ D R+ DN AL A + +V F P G ARQ F+ L Sbjct: 69 VYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGARQFGFMLRGL 125 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q+ L +GI F + D L L + + Sbjct: 126 RQLAPRLEARGIKFYLLK----GDPAHTLPQLVSGLGAGLLVTDYSPLRLGRTWRDQVCS 181 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSL 177 L + + +V+ + + + KAL + L + ++ Sbjct: 182 ALGSVPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFLREFPEVPTLPAWTPAV 241 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 A+ G ++ + P + ++ Y +R+ P Sbjct: 242 APEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPRGFLSPARLSLYDTKRNDP 301 Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G L+P++ + +S + + + H Sbjct: 302 ATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYLEELVVRRELADNFCHYCP 361 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG---FPIIDAAMRQLNTIGWMHNRL 353 Y S+ + + L Q G + +AA ++ +G MH + Sbjct: 362 TYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHDELWNAAQLEMVHVGKMHGFM 421 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNGGWQWAA 396 RM A +++ + E LDG D G W+ Sbjct: 422 RMYWAKKILEWTQGPEQAIEWAIYLNDRYELDGRDPG-GYTGVLWSM 467 >gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8] Length = 462 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 127/393 (32%), Gaps = 6/393 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ + + + +++ V + Sbjct: 84 RLADRGLKLVVREGAPDDVALAYAGAAAVLVTDRGYLRHQRQWRARVAEEAPCRVEQVEG 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + +M++ + V+ L + + R + Sbjct: 144 DVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDIDSGRSLDDIEA 203 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 D A+ ++P G A IL F E + Y E R+ S +S YL Sbjct: 204 VTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAVSHMSKYLH 263 Query: 251 IGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SP +++ + I+ EL + + C+ + Sbjct: 264 YGQISPVWLAQQVRRAEGPESDIESYIEELVVRRELTMNHVHFRPDTYDSYTCLPEWARE 323 Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365 + + + L + G T P +AAM+++ G+MHN +RM +++ Sbjct: 324 SLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPD 383 Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 + LDG ++ W Sbjct: 384 PKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFG 416 >gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris gallopavo] Length = 503 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 116/381 (30%), Gaps = 18/381 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A + + F P R F+ L + Sbjct: 71 LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLDAT---IRHYGFMLRGLRE 127 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + ++ I F + L S+ ++ V L + + + +++RL Sbjct: 128 VAEECAELDIPFHLL----LGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERL 183 Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + L + L + Sbjct: 184 PEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPPVIRHPHPPPNPP 243 Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + G L +L+ F +++ + QR+ P S Sbjct: 244 EPIAWDACYSSLQVDHTVTEVAWATPGTAAGLAMLQSFITKRLKSFGSQRNDPNKAALSN 303 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301 LSP+ G +S ++ +++ + + E + + Y SV Sbjct: 304 LSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 363 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + L +Q T P+ +AA Q+ G MH LRM A + Sbjct: 364 YDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKI 423 Query: 362 VKDLLVDWRIGEEYFMSQLLD 382 ++ + F L D Sbjct: 424 LEWTRSPEEALQ--FAIYLND 442 >gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 16/360 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + VF P+ + F+ L + Sbjct: 22 IYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDY---PSARNQHFRFMMEGLCE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L I F + ++ L + Q + + + L + + Sbjct: 79 IDLELEYLKIPFFMIS----GNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVI 134 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +I + V S + L Q LV+ + Sbjct: 135 NVPLIEVDAHNIVPCRIASHKEEF-AARTIRPKINGLLSQFLVEFPKLKQQRYKWKGHTA 193 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F + +P G + A L F + Y +R+ P I S LSP Sbjct: 194 HIDWE---RVINSFGIPNNFYPAGIRAADEALHNFVTGSLNGYNIKRNDPTIDHQSNLSP 250 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +S ++C E F + + + + + Sbjct: 251 YLHFGNISAQRCALDAGEAFWADEDIRAFKEELVVRRELAENYCFYNDHYDSVEGAHSWA 310 Query: 308 IPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 E+ + ++ ++Q T P+ +AA +++ G MH +RM A +++ Sbjct: 311 KKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIKGKMHGYMRMYWAKKMLEWT 370 >gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ] Length = 447 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 77/437 (17%), Positives = 139/437 (31%), Gaps = 31/437 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ + R+ DN LY A A ++ VFI RQ F+ L Q Sbjct: 21 VYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGAT---LRQYGFMLQGLEQ 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + L I F + + + + Q++ + + + + + Sbjct: 78 VARKLDGLNIPFLLLE----GEPRHSMLQFIAQEQTGCVVCDFDPLRIKRQWFDGVAAAA 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V+ + V S+ + R+ L + LV A + T Sbjct: 134 TVAVLEVDGHNIVPCRIASVKREFGAYT-LRPKLRRVLPEFLVSIPQVVQHPFAWKKTVA 192 Query: 188 VTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + P + P F GEQ A L F + + Y +R+ P + G S L Sbjct: 193 IPDTEQVQIRLKPDAGVGVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHGQSGL 252 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MG 304 SP+L G LSP++ + + ++ EL Sbjct: 253 SPWLHFGHLSPQRIALAVATQGDSEDVEAMLEELIVRRELSDNFCLYCASYDTLDAAPDW 312 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + + ++Q T + +AA ++ G MH LRM A +++ Sbjct: 313 AHRTLEKHRHDPRRFCYTQHEFEQAATHDLLWNAAQTEMLETGKMHGYLRMYWAKKILEW 372 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTG----------NDSVPYFRIFNP 411 LDG + G W+ G F ++ Sbjct: 373 SESPEEAISTAIYLNDRYSLDGRDPNGYAGIAWSI-CGVHDRAWGERPVFGSIRFMSYDG 431 Query: 412 TIQGKRFDPQGTFIRHW 428 + + D +IRHW Sbjct: 432 CKRKFKVD---EYIRHW 445 >gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 487 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 77/413 (18%), Positives = 145/413 (35%), Gaps = 26/413 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ ++R DN AL A + A + VF P+ R HF+ L + Sbjct: 26 LYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFI---DAGLRHFHFMLQGLEE 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L + GI + + E + + +++ + + + + + Sbjct: 83 TARILEELGIPLFLLRGT----PPEEVVRFAQAHGASRVVTDFDTLRIKRQWIRSAVEAA 138 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + I DS + P + + + + + L +L A+ G Sbjct: 139 RQLDIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQPAAVPWKGA 198 Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + D P GE AL L F + +++ Y +R+ P + S Sbjct: 199 YQRPDWQAALDSLQADASVQPAGWLPPGENAALAELTAFIRVRMHRYAAERNNPLMPVLS 258 Query: 244 QLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301 LSPYL G+LS R ++ + GA +++ EL + RE + + PS Sbjct: 259 HLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELADNFCWYEPSY 318 Query: 302 CMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F W + + + Q ++ T P+ +AA +++ G MH +RM Sbjct: 319 DSVEAFPDWALKTLDRHRADRRPYLYDEQQLEKARTHDPLWNAAQQEMVLTGKMHGYMRM 378 Query: 356 ITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWAASTGNDSVPY 405 A +++ LDG ++ G W+ G P+ Sbjct: 379 YWAKKILEWTESPEEALRIVIRQNDRWSLDGRDSNGYAGAAWSVG-GVHDRPW 430 >gi|15558998|gb|AAL02087.1|AF348456_1 cryptochrome 1 [Cucumis melo] Length = 61 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + T DS + RI NP ++G +FDP G ++R WLPEL+ +PT+ Sbjct: 3 LLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPNGEYVRRWLPELSRLPTE 61 >gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1] gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum hungatei JF-1] Length = 448 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 119/394 (30%), Gaps = 14/394 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+++ +R N AL A S+ +I VF + F++ L Sbjct: 21 LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPV---HYRFLWEGLQD 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +SL+++GI FQ ++ + + E R+ + Sbjct: 78 VNRSLTERGIGFQILS----GSPVDIIPRIADDACMMVTDQGWTRLQREWRQKVIDTAPC 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186 + ++ + V + A T A + L+ ++ TG Sbjct: 134 KVVIVETNLIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQGESTDCEPFTGL 193 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 PV P P GE A H L F E + Y + P TS LS Sbjct: 194 PVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSAFLSETIDRYEATHNDPTAHATSYLS 253 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 YL G +SP R+ E +Y L Y + Sbjct: 254 AYLHFGHISPLDIALRVMEHPGPGTNAFLEQLIVRRELSHNFVWYNPLYDHYEGLPEWTR 313 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 +I+ + S+ +++ T +A + G++H LRM +++ Sbjct: 314 KSLEKHRIDTREYSYTPADFEECRTHDRAWNAMQLSMIRTGYLHGYLRMYWGKKILEWTE 373 Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 LDG + G W Sbjct: 374 TPEDAYAIALYLNNRYELDGRDPNGYCGVAWCFG 407 >gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76] Length = 256 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 11/245 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL ++ Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + P + + + + +GE+ A L F +K+ Y +RD P TS LS Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235 Query: 248 YLSIG 252 + G Sbjct: 236 FFKNG 240 >gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] Length = 462 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 126/393 (32%), Gaps = 6/393 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R N AL A H++ + + + + R F+ L + ++ Sbjct: 24 LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ +G+ + + D ++ + + +++ V + Sbjct: 84 RLADRGLKLVVREGAPDDVALAHAGAAAVLVTDRGYLRHQKQWRARVAEEAPCRVEQVEG 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + ++++ + V+ L + + R + Sbjct: 144 DVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDIDSGRSLDDIAA 203 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 D A+ ++P G A IL F E + Y E R+ S +S YL Sbjct: 204 VTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAVSHMSKYLH 263 Query: 251 IGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SP +++ + I+ EL + + C+ + Sbjct: 264 YGQISPVWLAQQVRRAEGPESDIESYIEELVVRRELTMNHVHFRPDTYDSYTCLPEWARE 323 Query: 310 W--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365 + + + L + G T P +AAM+++ G+MHN +RM +++ Sbjct: 324 SLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPD 383 Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 + LDG ++ W Sbjct: 384 PKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFG 416 >gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus] Length = 564 Score = 90.7 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 127/411 (30%), Gaps = 28/411 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A+ A + F T S RQ F+ L Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLN---ASLRQFDFLLEGLKS 180 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 VQ+ + I F S D L+ + ++ + + ++ +L Sbjct: 181 VQRECHELNIGFNVLDGS--GDLT--LNDWVQTNNISAVVCDFNPLRVVRDWVTKVKSQL 236 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + P L + L + + T Sbjct: 237 APHVFFAQVDAHNIIPCWQASLKQEVYASTFRPKVLSQLDRFLTEFPAVIVHPYGKNCTA 296 Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + +++ P G +A+ L F ++ + Y R+ P S Sbjct: 297 ADIDWHYLLQSRDANKSVSPVKWAVPGYDHAVKSLYIFIQDNLSKYASLRNNPTTTVISN 356 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ ++ L +++E++ R FY Sbjct: 357 LSPWFHFGQISVQRVVLKIL----SLKSVYPDSVDRYIDEVVVRRELADNFCFYNDRYDC 412 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK-------QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 P + ++ + +++ T + ++A QL G MH +RM Sbjct: 413 VEGAPQWAQETIDQHKYDHRSYIYNLTELASCQTHDELWNSAQAQLRCEGKMHGYMRMYW 472 Query: 358 ASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405 A +++ +DG + G W+ G P+ Sbjct: 473 AKKIMEWTPSAEMALGYAIFLNDHYSVDGRDPNGYVGCMWSI-CGVHDRPF 522 >gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST] gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST] Length = 549 Score = 90.7 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 54/400 (13%), Positives = 119/400 (29%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN A A +D + F P+ R F+ L + Sbjct: 113 LYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFLDAT---IRHFKFMLKGLEE 169 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + + I F + S ++ ++ + ++ + + ++ + K L Sbjct: 170 VAEECRRLNIQFHLLRGSAGENV----PAFVKKHKIGGVVCDFSPLRVPMKWVDEVRKAL 225 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIRLTG 186 + D ++P + + + L Sbjct: 226 PMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFPPLVKHPFTANFEA 285 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + ++ G + L+ F ++++ + ++R+ P S Sbjct: 286 DPINWTQVLDTLQVDRTVEAVEWATPGYAGGVKTLQTFVEKRLGKFNDKRNDPTENALSN 345 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM- 303 LSP+ G ++ ++ +K+ S ++ RE + + Sbjct: 346 LSPWFHFGQIAVQRAVLTVKKHGKRYSESVASFCEE---AIVRRELSDNFCFHNKNYDNL 402 Query: 304 ---GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + +K + + T + ++A Q+ G MH LRM A Sbjct: 403 QGAYDWARKTLDDHRKDKRVYCYSREELETAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 462 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ E LDG + G W+ Sbjct: 463 KKILEWTKTPEEALETAIYLNDRYSLDGRDPNGYVGCMWS 502 >gi|161138108|gb|ABX58026.1| cryptochrome 1b [Triticum aestivum] Length = 76 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 33/76 (43%), Positives = 46/76 (60%) Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430 G +YF LLD DL S+ GWQ+ + + DS I NP ++G +FDP G ++R WLP Sbjct: 1 WGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLP 60 Query: 431 ELNNVPTQYIHAPHSW 446 EL +PT++IH P Sbjct: 61 ELARLPTEWIHHPWDA 76 >gi|254479942|ref|ZP_05093190.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma proteobacterium HTCC2148] gi|214039504|gb|EEB80163.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma proteobacterium HTCC2148] Length = 204 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 7 MS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIY 62 M + W R+DLRI DN AL H +++ VF + G+ ++ F+ Sbjct: 1 MPKVTEIYWFRSDLRINDNPALQ--LHCGVDRLLCVFFWPRDIPWCNLKGLGRQRERFLI 58 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 SL ++ L++ G + + + L S + +VT+ Sbjct: 59 ESLEALRAQLAELGQKLLVFRET----PAQVLPSLVDEYKVTR 97 >gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare] Length = 286 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC- 467 G +FDP G ++R WLPEL +PT++IH P +L NYPLPIV+ A Sbjct: 2 GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQV 61 Query: 468 --HHTLNQYYAA 477 L++ + Sbjct: 62 RLQEALSEMWQL 73 >gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus] gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus] Length = 489 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 73/453 (16%), Positives = 147/453 (32%), Gaps = 37/453 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V +A R G +RQ F+ L Q+Q Sbjct: 28 VYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFMLRGLQQLQH 87 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + I F Q ++ + + ++ + + L + + + + KR++ Sbjct: 88 DIQETLQIPFFLFQ----GEAEQTIPNFIRECGASLLVTDFSPLREVRKCKEEICKRVEE 143 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V D ++P K K L L+ +P Sbjct: 144 SVKVHEVDAHNVVPTWVASEKLEYSAKTLRGKINKKLPDYLIDYPSMVIPTRKWPSADKF 203 Query: 189 TPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + + P + + F +++ Y R+ P Sbjct: 204 IDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDGFLTKRLKGYAIDRNNPLKPK 263 Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL G +S ++C E + P++ ++ RE + + P Sbjct: 264 GLSGLSPYLHFGQISAQRC---ALEARSIRKLNPQAVDVFLEELIVRRELADNYCYYQPH 320 Query: 301 V------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + + + + ++ T P+ +AA ++ G MH +R Sbjct: 321 YDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPLWNAAQLEMAHHGKMHGFMR 380 Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY------ 405 M A +++ E +DG + G W+ G + Sbjct: 381 MYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVF 439 Query: 406 --FRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434 R N ++FD G +++ + E+ Sbjct: 440 GKIRYMNYAGCKRKFDVDGYIAYVKRLVGEIKK 472 >gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis] Length = 348 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 49/347 (14%), Positives = 100/347 (28%), Gaps = 29/347 (8%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R+ LR+ DN +L++A +FI E + + ++ +L + Sbjct: 5 SVLWFRHRLRLHDNPSLHSALEEKGFPFFPIFIFDGESAGTKVVGYNRMRYLLEALDDLD 64 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G + + + KL + + E RD ++ + Sbjct: 65 NQFKKHGGRLIMLK----GKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120 Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 V+CK L P +++ + + + + V + Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-------------- 234 P + F + P I ++Q Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240 Query: 235 -------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNE 284 + + LSP L G LS R + +++ F + + + Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 LIWRE++ + P+ + LQ W +G T Sbjct: 301 LIWREYFYTMSVNNPNYGQMAGNPICLDIPWKTPAGDELQRWVEGRT 347 >gi|30682738|ref|NP_849651.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana] gi|75201504|sp|Q9SB00|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=AtCPDII; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme 1; AltName: Full=Protein UV RESISTANCE 2 gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana] gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana] Length = 496 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 33/408 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++A V VF + ARQ F+ L Q Sbjct: 31 VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + I F Q D+ E + ++ + + L + R + KR Sbjct: 88 LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180 + D ++P + + + L L + + Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237 +L + + I+ P G + + F +++ Y R+ P Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G +S ++C E P++ ++ RE + Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350 + P K W K + S + +G T P+ +A+ ++ G MH Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMVYQGKMH 380 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +RM A +++ +DG S G W+ Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428 >gi|326526437|dbj|BAJ97235.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 703 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW ++DLR+ D+ L AAC V+ +++ G S + + +L ++ Sbjct: 41 AVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELLLFALKDLK 98 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 +L + ++ + + + +V ++ + E Sbjct: 99 LALKSQRSDLLV----GLGNAEDAVLKLANEVQVGVIYTEEEVEH 139 >gi|326524207|dbj|BAJ97114.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 703 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW ++DLR+ D+ L AAC V+ +++ G S + + +L ++ Sbjct: 41 AVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELLLFALKDLK 98 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 +L + ++ + + + +V ++ + E Sbjct: 99 LALKSQRSDLLV----GLGNAEDAVLKLANEVQVGVIYTEEEVEH 139 >gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9] Length = 470 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 72/442 (16%), Positives = 134/442 (30%), Gaps = 27/442 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN A+ A ++ + + + + R F+ L +++ Sbjct: 31 VYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISNFPHANLRHYAFLNQGLPDIEE 90 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ + I F + E + + + + R K L ++++ Sbjct: 91 DLAARNITFLMRRA-----PHESHEQLLADVKAAIVIGDENPMREPERWRKTLAEKIRIP 145 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 D + + + + P + + Sbjct: 146 FWTVDTDVVIPSSLIEKAQYGAYTIRPRLYRLLPEYLVPYENPHAQHPWHRPKSFKSDSV 205 Query: 191 SNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + G L L++F + + Y QR+ P GTS +SP Sbjct: 206 HEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKRFTTKLLGDYEVQRNKPEADGTSSMSP 265 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G L P+ + + + + WRE + + F + Sbjct: 266 YLHYGHLGPQTIALAVDAAAKANPKLQSARDSYFNELIAWRELAVNFVRFSSVYDTAECA 325 Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITAS-- 359 W +K + T + +AA Q+ GWMHN +RM A Sbjct: 326 ENWAQKTIAEHARDEREHIYTTKQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMYWAKKI 385 Query: 360 -FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND----SVPYF---RIFNP 411 D+ ++ +DG + G WA D + P F R + Sbjct: 386 LEWTPDVDTAMKVCVYLNDKYFIDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKRRYMSG 445 Query: 412 TIQGKRFDPQGTFIRHW--LPE 431 K+FD + +IR LPE Sbjct: 446 ASTSKKFDSKA-YIRQMNALPE 466 >gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy] Length = 459 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 126/402 (31%), Gaps = 9/402 (2%) Query: 5 TAMSVH------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 ++M V+ + W++ R+ N+AL A ++A + + + G R Sbjct: 11 SSMPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFAGAQERHY 70 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L +VQ+ L GI H + + + + +V Sbjct: 71 RFMLEGLAEVQQQLRLLGIPLWVHGDGIIPGLAKLVPFISVLVTDRAYTRVERQWRKQVA 130 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + + S ++ + F + + D S Sbjct: 131 SFVSCPFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIAYFAQIVAIQKPLVDGLSEE 190 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + T + + P GE A L +F + K+ Y R+ P+ Sbjct: 191 PLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIESKLSGYAIHRNDPS 250 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 Q +S LSPYL G +S ++ ++E V+ + ++ L Y Sbjct: 251 QQFSSGLSPYLHFGQISAIDIYHAVREIEVEDVPVFLEELIVRRELAYNFVWFNPLYDAY 310 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + + +Q T P +AA ++L +G MHN LRM Sbjct: 311 EGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWNAAQKELTELGTMHNYLRMYWG 370 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ + +DG + G W Sbjct: 371 KKILEWSPSPKEAFMRALALNNTYQMDGRDPNGYAGVAWCFG 412 >gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA] gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens PCA] gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter sulfurreducens KN400] Length = 461 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 71/405 (17%), Positives = 127/405 (31%), Gaps = 18/405 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A A + +F P ARQ F+ L Q Sbjct: 21 IYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLGAT---ARQYRFMLKGLEQ 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ +L++ I F D + ++ + RV+ L + + + + + Sbjct: 78 VRAALNRLDIPFFL----VTGDPKGAVAAFTRRHRVSYLVTDFDPLRVKREWKRQVAGEI 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S R L+ P P Sbjct: 134 SIPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPPLQRHPFPWQGALPS 193 Query: 188 VTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 +++ GE+ A L +F ++ + Y +R+ PA+ G S L Sbjct: 194 DAEWRETFTGMTLDESVPEVSWLASGEEAAQAALARFLEDGLAGYATRRNNPAVMGQSGL 253 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP+L G LS ++ + + + + F + A+ + Sbjct: 254 SPWLHFGQLSAQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCYYNDAYDRFDGFPE 313 Query: 306 PFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + + +QG T + +AA ++ G MH LRM A L++ Sbjct: 314 WAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMHGYLRMYWAKKLLE 373 Query: 364 DLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405 LDG + G W+ G P+ Sbjct: 374 WTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIG-GVHDRPW 417 >gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] Length = 496 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 67/408 (16%), Positives = 125/408 (30%), Gaps = 33/408 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++A V VF + ARQ F+ L Q Sbjct: 31 VYWMFRDQRLNDNWALIHAVDLANRTNAPVAVVFNLFDQFLGAK---ARQLGFMLKGLRQ 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + I F Q D+ E + + + + L + + KR Sbjct: 88 LHHQIDSLQIPFFLLQ----GDAKETIPKFIAECGASHLVTDFSPLREIRSCKDEVVKRT 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----------IQNLVQADLRSL 177 + D ++P + + L ++ + + Sbjct: 144 SDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLLPDYLIEFPKLELPKKKWTGMM 203 Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + + + P G + + F +++ Y R+ P Sbjct: 204 DKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLMGKKDGFLTKRLKNYSADRNNP 263 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G +S ++C E P++ ++ RE + Sbjct: 264 VKPKALSGLSPYLHFGQISAQRC---ALEARKVRNTSPQAVDTFLEELIVRRELSDNFCY 320 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350 + P K W K + S + +G T P+ + + ++ G MH Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTADPLWNGSQLEMVYQGKMH 380 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +RM A +++ +DG S G W+ Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428 >gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus] gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus] Length = 510 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + + + F P+ R F+ L + Sbjct: 74 VYWMSRDARVQDNWAFLFAQKLAMKNELPLHVCFSLVPKFLEAT---IRHFKFMLKGLEE 130 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V K I F + + + + ++ + + + + + K L Sbjct: 131 VAKECESLNIQFHMLTGM----AKDTVPKFVKAHKMGAVVCDFSPLRVPAQWVEDVRKAL 186 Query: 128 QHRVICKSFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 V D ++P L +A + + ++ ++ Sbjct: 187 PAEVPLCQVDAHNVVPVWVTSEKLEYAARTIRTKVNNNLNTYLTQFPPVVKHPHKSKLKA 246 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P + G + L+ F ++++ + +R+ P S Sbjct: 247 EPIDWPKLLDTLQVDRTVDEVEWAVPGYTGGVATLQGFVEKRLRKFNAKRNDPTDDALSN 306 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+ G +S ++ +K+ S ++ RE + + + Sbjct: 307 LSPWFHFGQISVQRAILAVKKYGKGFSEGVASFCEE---AIVRRELSDNFCYYNKNYDNL 363 Query: 305 KPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W K + Q T + ++A Q+ G MH LRM A Sbjct: 364 KGAYDWARKTLDDHRKDKRTHVYTRDQLEQAKTHDDLWNSAQLQMVKEGKMHGFLRMYWA 423 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ E LDG + G W+ Sbjct: 424 KKILEWTKSPEEALETAIYLNDRYQLDGRDPNGYVGCMWS 463 >gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana] gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana] Length = 496 Score = 89.1 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 70/408 (17%), Positives = 129/408 (31%), Gaps = 33/408 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++A V VF + ARQ F+ L Q Sbjct: 31 VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + I F Q D+ E + ++ + + L + R + KR Sbjct: 88 LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180 + D ++P + + + L L + + Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237 +L + + I+ P G + + F +++ Y R+ P Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G +S ++C ++ ++ RE + Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVDIFLEEL---IVRRELSDNFCY 320 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350 + P K W K + S + +G T P+ +A+ ++ G MH Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMLYQGKMH 380 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +RM A +++ +DG S G W+ Sbjct: 381 GFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 428 >gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus] gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus] gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus] Length = 464 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 72/438 (16%), Positives = 137/438 (31%), Gaps = 28/438 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYAS 64 V L W+ D R+ DN AL A + I + F P+ H ++R F+ + Sbjct: 37 KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKF---HTTTSRHFMFLISG 93 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V + + + + RV + + R K Sbjct: 94 LKEVAEECK----RLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTV 149 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIR 183 L + D ++P + + L + + + + Sbjct: 150 ISLPDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPF 209 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 P NI G + + +L++F K ++ Y + P S Sbjct: 210 SISIAKPKNISLDKTV---LPVKWATPGTKAGIIVLKEFIKNRLPSYDADHNNPTCDALS 266 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+L G +S ++ + + + ++ + + + + Y S+ Sbjct: 267 NLSPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFCYYNKHYDSIQS 326 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + T + N + + KQ T P+ +A+ Q+ G MH+ LRM A Sbjct: 327 THSWARKTLEDHINDPRKYIYSIKQLEKAETHDPLWNASQMQMVREGKMHSFLRMYWAKK 386 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFN 410 +++ LDG + G W+ +D R N Sbjct: 387 ILEWTRTPEDALSYSIYLNNKYELDGTDPNGYVGCMWSICGLHDRAWKERPIFGKIRYMN 446 Query: 411 PTIQGKRFDPQGTFIRHW 428 K+FD FI+ + Sbjct: 447 YESSKKKFD-VAVFIQKY 463 >gi|4454017|emb|CAA23070.1| hypothetical protein [Arabidopsis thaliana] gi|7269380|emb|CAB81340.1| hypothetical protein [Arabidopsis thaliana] Length = 581 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 8/108 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW ++DLR+ D+ L AA + VI +++ ++ + I +L Sbjct: 35 STAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDTLELAII--ALED 90 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++K+L ++G + ++ ++ + R +F + E + Sbjct: 91 LRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYH 134 >gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon pisum] Length = 506 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 70/439 (15%), Positives = 133/439 (30%), Gaps = 31/439 (7%) Query: 11 LVW-LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 + W R D RI DN AL A + +++ I + S R I+ L +++ Sbjct: 68 IYWTFR-DERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLDCSLRHYKHIFQGLEELE 126 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 I F + + + L + + ++ + + + K L R+ Sbjct: 127 TECKSLDIQFHFL----IGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRIGS 182 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V D ++P + + + + + P Sbjct: 183 EVPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPPVIKHPFRSTFKAKP 242 Query: 190 PSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + P G + + L +F K+++ Y R+ P G S+LS Sbjct: 243 TNWDEADKTLEVDRSVVSVPGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLS 302 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G +S ++C + + + ++ RE + + P + Sbjct: 303 PWLHFGQISAQRCILEVSKLSKQYPDSVAAYREE---AIVRRELSDNFCFYNPKYDKIEG 359 Query: 307 FIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + T + ++A QL G MH LRM A Sbjct: 360 APNWAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRMYWAKK 419 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIF 409 +++ R + +DG S G W+ G + R Sbjct: 420 ILEWTDTPDRALADAIYLNDKYSMDGRDPSGFVGCMWSI-CGIHDQGWKEREIFGKIRYM 478 Query: 410 NPTIQGKRFDPQGTFIRHW 428 N ++FD FI + Sbjct: 479 NYAGCKRKFDINA-FIARY 496 >gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii] gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii] Length = 510 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 67/405 (16%), Positives = 122/405 (30%), Gaps = 30/405 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A + D V VF AR F+ L Sbjct: 64 VYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFLLRGLRV 120 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K+L + GI F + + + ++ + L + + RL Sbjct: 121 VEKNLEKLGIAFFLLR----GRPEDTIPAFVEACNASILVLDFSPLRIGRTWRTGVVSRL 176 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPV 179 + + Y T K Q ++ + P Sbjct: 177 GADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLEPFSKPWPG 236 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + + +D P + + Y E+ D + Sbjct: 237 VAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAGFLSSRLQRYSAERNDPSKL 296 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S LSPY G LSP++C +++ + +S +I RE + + P Sbjct: 297 ERLSDLSPYFHYGQLSPQRCAFEVRKA---RKLHMQSVDSFLEELIIRRELSDNFCYYQP 353 Query: 300 SVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + W + + + Q + G T + +A+ ++ G MH + Sbjct: 354 NYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMVHRGKMHGFM 413 Query: 354 RMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395 RM A +++ LDG + G W+ Sbjct: 414 RMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWS 458 >gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC BAA-798] Length = 449 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 142/456 (31%), Gaps = 47/456 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + + D R+ DN AL A + ++ +F+ + R G S F+ L + Sbjct: 2 VYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVL---RERPGGRSREHFLFMLDGLEE 58 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V + L + GI + Q S ++ L + R + Sbjct: 59 VSRRLQELGIAWVLRQGSPSRTTLATLREL------DAASVYLDFSPLRGARARAELLAR 112 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRL 184 + D ++P + + L+ ++A R + P A L Sbjct: 113 EFEGSTHVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHL 172 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P I P GE+ A L+KF EK+ YY R+ S Sbjct: 173 ETLSFEQARDIVHGLPACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSD 232 Query: 245 LSPYLSIGVLSPRQC--------------WNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 LSP+L +G +S + R K G + L E+I R+ Sbjct: 233 LSPWLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKE 292 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL-------QAWKQGYTGFPIIDAAMRQL 343 + P + Q W++ T +AA QL Sbjct: 293 LSDNFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQL 352 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN 400 +G +H +RM A +++ E +DG + G W+ + Sbjct: 353 RRVGKIHGYMRMYWAKKMLEWSRSPEEAVEMCVYLNDKYSVDGGDPNGYAGILWSIGGLH 412 Query: 401 DS----VPYF---RIFNPTIQGKRFDPQGTFIRHWL 429 D P F R + +++D ++ + WL Sbjct: 413 DHPWKERPVFGKIRYMSAEGIRRKYDLD-SYCKRWL 447 >gi|15559004|gb|AAL02090.1|AF348459_1 cryptochrome 1b [Hordeum vulgare] Length = 61 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PT+ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTE 61 >gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus DSM 9941] Length = 464 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 73/433 (16%), Positives = 142/433 (32%), Gaps = 23/433 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R N AL A ++A ++ VF T + R F+ L Sbjct: 27 LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTD---GYPEANLRHYAFMLEGLAD 83 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K L ++GI F + S + ++E L ++ V + Sbjct: 84 VEKGLRRRGIGFAVRRGSPDEVALEAGRRAALIVTDRGYLRHQVRWRENVAAEAGCRVTQ 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + ++ + F L ++ + + L+ P Sbjct: 144 VESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAGAGLGGLDLSDP 203 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 D + ++ G + A +LR+F +E + Y RD P G S +S Sbjct: 204 GR-VLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQPHAGGVSHMSK 262 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP R + + + F R+ + C+ + Sbjct: 263 YLHFGHISPLYVALRARGSGAPEEDVGAFLEELVVRRELAVNFVRYTPNYDSYSCLPEWA 322 Query: 308 IPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 E+ + + + + T P +AAM ++ G++HN +RM ++ Sbjct: 323 RSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLHNHMRMYWGKRILGWT 382 Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQ 414 LDG ++ W G P+ R + + Sbjct: 383 RTPQHAYRTALYLNNRYFLDGRDPNSYANVAWVF--GLHDRPWKERPVFGKVRYMSRSGL 440 Query: 415 GKRFDPQGTFIRH 427 ++ DP G ++R Sbjct: 441 ERKTDP-GAYVRR 452 >gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ] Length = 453 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 80/444 (18%), Positives = 136/444 (30%), Gaps = 38/444 (8%) Query: 11 LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A S A ++ VF P G + RQ F+ A L + Sbjct: 22 VYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L I +L V ++ V+R + Sbjct: 79 TEAALRAHSIPLAVLTGEPGFTVPAFL------HSVDAGVCVTDFDPLRVKRVWKAAVAV 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D + P P L+ ++ PA L G Sbjct: 133 ASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKPFPDLPTFPAANLDGF 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P G A +L F ++++ Y +R+ P TS Sbjct: 193 APVDWRAAADFVQADPSVPPVTGIVPGSAAATQVLDDFLRDRLEGYAARRNDPNAGATSG 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY G L+P++ E + ++ RE + + P Sbjct: 253 LSPYFHFGQLAPQRAALATLEARSRAKEGADAFLEEL---VVRRELADNFCLYEPEYDSF 309 Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W K + + + + T + +AA RQL+ G +H +RM A Sbjct: 310 EALPEWARKTLAAHAADSRPYLYDRETFAAATTHSALWNAAQRQLSREGRIHGYMRMYWA 369 Query: 359 SFLVKDLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ + + LDG + G W+ G P+ R Sbjct: 370 KKILEWSGSPREALETALFLNDRFALDGRDPNGVVGVLWSVG-GLHDRPWANRPVYGQVR 428 Query: 408 IFNPTIQGKRFDPQGTFIRHWLPE 431 N ++FD ++ + PE Sbjct: 429 YMNERGCRRKFDVDA-YVARY-PE 450 >gi|296084158|emb|CBI24546.3| unnamed protein product [Vitis vinifera] Length = 704 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 8/183 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV ++W ++DLRI D+ L AA VI +++ + S + ++ Sbjct: 44 SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSR--FSDEMLELVLVAMED 100 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL +G F + + + + + T +F + E + +++ L Sbjct: 101 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 156 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + V+ L+ +Q + + L +P++ + Sbjct: 157 ATAPLLERSPEVVMWHTPFYDIKDLKYL-PPLHHDFKKLQLPITSPLGPPRLPSVEIGLD 215 Query: 188 VTP 190 P Sbjct: 216 WGP 218 >gi|213423099|ref|ZP_03356117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 47 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 36/47 (76%), Positives = 40/47 (85%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426 L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD G FIR Sbjct: 1 LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIR 47 >gi|240256063|ref|NP_194259.4| DNA photolyase [Arabidopsis thaliana] gi|332659635|gb|AEE85035.1| DNA photolyase [Arabidopsis thaliana] Length = 692 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 8/108 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW ++DLR+ D+ L AA + VI +++ ++ + I +L Sbjct: 35 STAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDTLELAII--ALED 90 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++K+L ++G + ++ ++ + R +F + E + Sbjct: 91 LRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYH 134 >gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae] Length = 528 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 73/440 (16%), Positives = 134/440 (30%), Gaps = 33/440 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + F P RQ F+ A L + Sbjct: 98 VYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATT---RQFRFMLAGLRE 154 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ Q GI F + + E L + ++ + + LL +RL Sbjct: 155 VETEALQLGIAFHVLK----GSAPEALPRFVEHHKIGCVVADFNPLRVVREWCSLLCERL 210 Query: 128 QHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + D ++P + + + P + + P Sbjct: 211 RGMRVSVVQVDAHNIVPAWVVSDKQEAGARTMRPKIHRHLPAFLTEYPPVAVHPVSGPAS 270 Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + G + A +L FC E+++ Y + R+ PA G S Sbjct: 271 VRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGLSN 330 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +SPY G ++ ++ S ++ RE + + Sbjct: 331 MSPYFHFGQIAVQRAV---LVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSV 387 Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + + + T + +AA Q+ G MH +RM A Sbjct: 388 EGASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMHGFMRMYWA 447 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQ 414 +++ + LDG + G W+ +D R +F Sbjct: 448 KKILEWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDRAWAERPVFGKVRY 507 Query: 415 G------KRFDPQGTFIRHW 428 ++FD G +IR + Sbjct: 508 MSYSGCLRKFD-VGCYIRRY 526 >gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens] Length = 711 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 7 MS---VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 MS +VW ++DLR D+ L A VI +FI + G S + ++ Sbjct: 1 MSGKKTAIVWFKHDLRTDDHPGLAFAAQYD--HVIPLFIFDSSFYA--GCSEERLASLFD 56 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ +++SL G + + L + + + + + E Sbjct: 57 AVADLRRSLKSIGSTLVIRRA----RVNDVLLNLAQEVGASTIIAEEEVEEIWH 106 >gi|15559012|gb|AAL02094.1|AF348463_1 cryptochrome 1 [Musa acuminata] Length = 61 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 37/59 (62%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D RI NP +G +FDP G ++R WLPEL +PTQ Sbjct: 3 LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTQ 61 >gi|225455683|ref|XP_002265202.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 718 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 8/183 (4%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 SV ++W ++DLRI D+ L AA VI +++ + S + ++ Sbjct: 58 SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSR--FSDEMLELVLVAMED 114 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++SL +G F + + + + + T +F + E + +++ L Sbjct: 115 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 170 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + V+ L+ +Q + + L +P++ + Sbjct: 171 ATAPLLERSPEVVMWHTPFYDIKDLKYL-PPLHHDFKKLQLPITSPLGPPRLPSVEIGLD 229 Query: 188 VTP 190 P Sbjct: 230 WGP 232 >gi|15559006|gb|AAL02091.1|AF348460_1 cryptochrome 2 [Hordeum vulgare] Length = 61 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD D S+ GWQ+ + D R+ NP +QG+++DP G ++R W+PEL +P + Sbjct: 3 LLDADRESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARMPGE 61 >gi|15559014|gb|AAL02095.1|AF348464_1 cryptochrome 2 [Musa acuminata] Length = 61 Score = 87.6 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D R+ NP + G+++DP G +IR+W+PEL +PT+ Sbjct: 3 LLDADLESDILGWQYVSGSLPDGHELKRLDNPEVLGQKYDPDGEYIRNWIPELARLPTE 61 >gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii] gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii] Length = 510 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 30/405 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A + D V VF AR F+ L Sbjct: 64 VYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFLLRGLRV 120 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K+L + GI F + + + S+ + L + + RL Sbjct: 121 VEKNLDKLGIAFFLLR----GRPEDTIPSFVEACNASILVLDFSSLRIGRTWRTGVVSRL 176 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPV 179 + + Y T K Q ++ + P Sbjct: 177 GADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLEPFSKPWPG 236 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + + +D P + + Y E+ D + Sbjct: 237 VAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAVFLSSRLQRYSAERNDPSKL 296 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 + S LSPY G LSP++C +++ + +S +I RE + + P Sbjct: 297 ERLSDLSPYFHYGQLSPQRCAFEVRKA---RKLHMQSVDSFLEELIIRRELSDNFCYYQP 353 Query: 300 SVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + W + + + Q + G T + +A+ ++ G MH + Sbjct: 354 NYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMVHRGKMHGFM 413 Query: 354 RMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395 RM A +++ LDG + G W+ Sbjct: 414 RMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWS 458 >gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8] Length = 487 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 65/397 (16%), Positives = 114/397 (28%), Gaps = 17/397 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W++ R DN AL A ++ + + R F+ L +++ Sbjct: 52 VYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPHANLRHYAFLNQGLPDIEE 111 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + +G+ F + E + + + + R L K L+ Sbjct: 112 DCAARGVGFVMRRA-----PEEDHERFFADVDAAMVIGDENPMREPERWRAKLAKSLRVP 166 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 D V + + + + + R Sbjct: 167 FWTVDADVIVPSKLLEKAQFSAGVARPRLYRALPEFLHDYENPAALKVWRKPRGLHTDDI 226 Query: 191 SNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 F + G A+ L FC + + Y R+ P + G+S+LSP Sbjct: 227 REDMTRGWKDFDRSVLPVAAWQGGHHAAMKRLHLFCGQMLETYDRDRNHPELDGSSKLSP 286 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G L P L + + + ++WRE + + + P Sbjct: 287 YLHFGHLGPLTIALALNAQVKRQPKLAAARDSYFNELIVWRELAVNFVRYQPEYDSPGCA 346 Query: 308 IPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA--- 358 W D + T + +AA Q+ GWMHN LRM A Sbjct: 347 DNWARATIAEHDRDEREVLYTLAQLEGARTHDELWNAAQLQMVRYGWMHNYLRMYWAKKI 406 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 ++ + LDG + G WA Sbjct: 407 VEWTRNTATAMKWAIYLNDRYFLDGRDPNGYAGVAWA 443 >gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 506 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 69/396 (17%), Positives = 118/396 (29%), Gaps = 11/396 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + WL D R+ DN AL AC + A V IA + G ARQ F+ L +++ Sbjct: 30 VYWLSRDQRVRDNWALLRACDVARANDAPVVIAFNLLTKFLGAGARQFGFMLRGLRELEG 89 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + K + F +I+ L + + F + + + L + Sbjct: 90 AAKAKNVTFAMTYGDEPAIAIDALAKKIGAKTIVCDFSPLRDGLKWRKELAALCEARSAH 149 Query: 131 VICKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + V S ++ + + L + D Sbjct: 150 CEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLHEFPEVPDDLPKYSGPALDAVK 209 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 GE A +L F ++ Y ++ D Q S LSP Sbjct: 210 WDDIIAEALSRGQAVPEVTWAIPGETAAHAVLDDFVNSRMKLYEKRNDPSKPQALSGLSP 269 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFYPSVCMG 304 +L G +S ++C K+ F EL Y Sbjct: 270 WLHFGQISGQRCALEAKKAVGKASPPAYESFFEELVVRRELSDNFCYYSPKYDQIEGQKY 329 Query: 305 KPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + L+ ++ T + +AA R+L G MH RM A ++ Sbjct: 330 DWAKDTLRLHASDKRPYLYSLEELERAKTHDDLWNAAQRELRYGGKMHGFCRMYWAKKIL 389 Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 + + + + LDG S G W+ Sbjct: 390 EWTESPEQALKFAIYLNDTYSLDGRDPSGYVGCMWS 425 >gi|238606859|ref|XP_002396828.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553] gi|215470103|gb|EEB97758.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553] Length = 134 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSV---PYFRIFNPTIQGKRFDPQGTFIRHWL 429 E++ S L+D D+ASN G W + A GND R FNP Q +D +G ++R W+ Sbjct: 3 AEWYESLLIDYDVASNYGNWAYVAGVGNDPRASEGEPRKFNPVKQAFDYDAKGEYVRTWI 62 Query: 430 PELN--NVPTQYIHAPHSWLDKND 451 E N N+ +++ L+K+D Sbjct: 63 GEFNGFNMKEEWLFQAWKALEKDD 86 >gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus] gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus] Length = 466 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 120/398 (30%), Gaps = 23/398 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D RI DN A A + A + F RQ HF+ L Sbjct: 38 VYWMSRDSRIEDNWAFLYAQQIAIQNQAPLHVCFCLVTWFCN---AGMRQFHFLLEGLKF 94 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 VQ+ + + F S + L +C + V + + + + L+K L Sbjct: 95 VQQECKRLNVSFHLLDGSGD----QVLLDWCNRNDVDVIVCDFNPTVKPMEWIHNLKKTL 150 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D +LP L+ RK D + P + Sbjct: 151 PGHMSLTQVDAHNILPCWRQLSAPSTHSFRKIAVRKLNRYLTQFPDAKVHPYGTAKFPHV 210 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + G A+ KF K ++ Y E R+ P S LSP Sbjct: 211 DWDALLQSRNADTSVEPVTWAEAGYHGAIKTFTKFVKCRIQSYHELRNKPTEAVCSNLSP 270 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S ++ +K I RE + + + Sbjct: 271 WLHFGQISAQRVILHVKSLTNVKGDNI---DTFVDECFIRRELADNFCFYTKRYDSIEAS 327 Query: 308 IPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 P + + + + L+ ++ T + +AA QL G MH +RM Sbjct: 328 APNWALITLKAHEKDRRQYVYSLKVFENADTHDLLWNAAQIQLVREGKMHQYMRMYWCKK 387 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ LDG + G W+ Sbjct: 388 ILEWSDDAQTALNYAIYLNDKYSLDGRDPNGYVGCLWS 425 >gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP-6] gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Methanosaeta concilii GP-6] Length = 445 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 57/398 (14%), Positives = 118/398 (29%), Gaps = 27/398 (6%) Query: 12 VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 W+ + R+ DN L A + + +F +P+ Q F+ L +V Sbjct: 23 YWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQFLEATSS---QYKFMLKGLEEV 79 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + L++ I D + + + L + ++ + + K Sbjct: 80 ETDLAELNIPLYLLS----GDPAKEIPQFLQSHEAGILVSDFSPLRIKMIWQRSIAKE-V 134 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + +++ + L Y + L + L Sbjct: 135 NIPCYEVDGHNIVPCWQASLKQEWAAYSFRPKIHRLLDEYLTDFPALKAHPFPWPEAVDN 194 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + GE+ A L +F + + Y R+ P G S LS Y Sbjct: 195 DWRGAEMAIRADHISDMSWAQPGERAAKKHLNEFIDQGLVLYDSDRNNPVKNGQSGLSFY 254 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +S ++ L + ++ RE + + P + F Sbjct: 255 LHFGQISAQRVALMA-------LSGMTDSSPFLEELVVRRELADNFCYYNPHYDSVQGFP 307 Query: 309 PWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W ++ ++ + + T + +AA ++ G MH +RM A ++ Sbjct: 308 NWAQETLRQHENDPREYLYSIKELEEAKTNDELWNAAQTEMVCRGKMHGYMRMYWAKKIL 367 Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 + + LDG + G W+ Sbjct: 368 EWTSSPAEAMDIAIYLNNRYELDGRDPNGYTGIAWSIG 405 >gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916] Length = 321 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 5/246 (2%) Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224 +++ V L P P + + + F + + + + Sbjct: 1 MLEQPVPPPLAWDPAPGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKR 60 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + Y R+ T LSP++ GVL+ + + + + + + G +NE Sbjct: 61 VEAKRYGRSRNHLDGAVTG-LSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDG-AKLINE 118 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+F++ + + T + L ++G TG +DA R+L Sbjct: 119 LGWRDFWQRMWSDLGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAFQRELV 178 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T GW+HN RM A+++V V W+ G ++F+ LLDGD ASN+ WQW AS+ P Sbjct: 179 THGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSHKP 237 Query: 405 YFRIFN 410 YF FN Sbjct: 238 YF--FN 241 >gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus] gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus] Length = 472 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 75/437 (17%), Positives = 140/437 (32%), Gaps = 32/437 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D RI DN AL A + I + F P H ++R F+ L + Sbjct: 31 LYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVP---GFHTTTSRHFSFLLDGLKE 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + I F + + + S + +V + + + K + L Sbjct: 88 IAEECIKLSIGFN----AVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPEKLIKQVTSVL 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +V+ D ++P + + ++ + P + Sbjct: 144 PDKVVFIQVDAHNIVPCWEASHKQEYGARTLRKKINGMLDTYLTEFPVITKHPYGPFS-- 201 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V+ +N G + A +L F K ++ Y + P + S LSP Sbjct: 202 VSIANNKGVEFDDTVHPVSWAVPGSKAAFKVLDDFLKNRLAAYESDHNNPTCEALSNLSP 261 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +S ++ + I PKS + +I RE + + + Sbjct: 262 WLHFGHISAQRVVLETLKY---KSIHPKSVSVFLDEIIIRRELADNFCYYNKRYDSIEST 318 Query: 308 IPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W + + + + T P+ ++A Q+ +G MH+ LRM A + Sbjct: 319 HSWARETLEAHVNDRRKYIYSLKQLERAETHDPLWNSAQIQMVRLGKMHSFLRMYWAKKI 378 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411 ++ LDG + G W+ +D R N Sbjct: 379 LEWTRSPKEALRYSIYLNDKYELDGTDPNGYVGCMWSICGLHDRAWSERPIFGKVRYMNY 438 Query: 412 TIQGKRFDPQGTFIRHW 428 K+FD FI + Sbjct: 439 EGTKKKFDVNA-FISKY 454 >gi|18391386|ref|NP_563906.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana] gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana] gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana] gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana] Length = 490 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 125/402 (31%), Gaps = 27/402 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++A V VF + ARQ F+ L Q Sbjct: 31 VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + I F Q D+ E + ++ + + L + R + KR Sbjct: 88 LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180 + D ++P + + + L L + + Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237 +L + + I+ P G + + F +++ Y R+ P Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G +S ++C E P++ ++ RE + Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + P K W K + S + + A ++ G MH +RM Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLEMVYQGKMHGFMRMY 380 Query: 357 TASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 A +++ +DG S G W+ Sbjct: 381 WAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWS 422 >gi|167919770|ref|ZP_02506861.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215] Length = 176 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + D + + S+ ++++R+Y + D Sbjct: 59 LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPP 169 >gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus] Length = 132 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363 P +I W+K+ L W +G TGFP IDA M QL GW+H+ R A FL + Sbjct: 14 MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 73 Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423 DL + W G + F LLD D + N G W W + + +F + P G+R DP G Sbjct: 74 DLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF-QQFFHCYCPVGFGRRTDPNGD 132 >gi|167816640|ref|ZP_02448320.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91] Length = 168 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + D + + S+ ++++R+Y + D Sbjct: 59 LHGSLRAL----GAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAP 168 >gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena variabilis ATCC 29413] gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Anabaena variabilis ATCC 29413] Length = 278 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVLS R+ + + + +K A +NEL WR+ Sbjct: 51 YAKTRNFLTGDVTR-LSPYIRYGVLSLREIRDYVLD-----NVKHSDDATKLINELGWRD 104 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L + T S L K+G TG ID+ R+L G++ Sbjct: 105 YWQRLYVKLGNGIWEDQEEYKTGYTPAEYASDLATDIKEGKTGLVCIDSFSRELRETGYL 164 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN +RM A+++V + W+ G ++F+ LLDGD ASNN WQW AST PYF F Sbjct: 165 HNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 221 Query: 410 N 410 N Sbjct: 222 N 222 >gi|212275864|ref|NP_001130328.1| hypothetical protein LOC100191423 [Zea mays] gi|195612420|gb|ACG28040.1| deoxyribodipyrimidine photolyase family protein [Zea mays] Length = 706 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 44/125 (35%), Gaps = 6/125 (4%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 +VW ++DLRI D+ L AA V+ +++ G S + + +L ++ Sbjct: 46 AVVWFKHDLRIDDHPGLAAAVSEPRRPVVPLYVFDRRILA--GYSDKMLELLLFALKDLK 103 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 +L + ++ + + + + +F + E +E L + Sbjct: 104 MTLKSQDSDLLI----GLGNAEDVVLKLVNEVQAGLVFTEEEVEYRVRDVLANVESSLSN 159 Query: 130 RVICK 134 Sbjct: 160 GSFSW 164 >gi|18874061|dbj|BAB85485.1| cryptochrome [Sarcophaga bullata] Length = 81 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463 P KR DP G +I+ ++PEL NVP +YIH P + ++YP ++D Sbjct: 7 CPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDL 66 Query: 464 KKACHHTLNQYYAAK 478 AC + Sbjct: 67 NVACKRNTIAMRTLR 81 >gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana] Length = 505 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 125/379 (32%), Gaps = 30/379 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++A V VF + ARQ F+ L Q Sbjct: 31 VYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAK---ARQLGFMLKGLRQ 87 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + I F Q D+ E + ++ + + L + R + KR Sbjct: 88 LHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRT 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNLVQADLRSLPVP 180 + D ++P + + + L L + + Sbjct: 144 SDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMM 203 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIP 237 +L + + I+ P G + + F +++ Y R+ P Sbjct: 204 DKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263 Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL G +S ++C E P++ ++ RE + Sbjct: 264 IKPKALSGLSPYLHFGQVSAQRC---ALEARKVRSTSPQAVDTFLEELIVRRELSDNFCY 320 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350 + P K W K + S + +G T P+ +A+ ++ G MH Sbjct: 321 YQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMVYQGKMH 380 Query: 351 NRLRMITASFLVKDLLVDW 369 +R + + + +L + Sbjct: 381 GFMRQVKSFIWILTVLYNS 399 >gi|15559000|gb|AAL02088.1|AF348457_1 cryptochrome 2 [Cucumis melo] Length = 61 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + D R+ +P IQG ++DP G +IRHWLPEL +PT+ Sbjct: 3 LLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTE 61 >gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis] Length = 444 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 61/395 (15%), Positives = 107/395 (27%), Gaps = 19/395 (4%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 D R+ DN AL A + + + V +A ARQ F+ L +Q L Sbjct: 3 RDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQAL 62 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVT---KLFYNRQYEINEVRRDKLLEKRLQHRVI 132 I + D +E + + F + + K H V Sbjct: 63 NIPLFLLK----GDPLETVPQLVKDTGASLLVTDFAPLRLGRHWREGVAAKIKVPFHEVD 118 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 + + K+++ + L + Sbjct: 119 AHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLEPQPEWSSGVTPEAVDWDALL 178 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------DIPAIQGTSQLS 246 GE A+ L R D S LS Sbjct: 179 AEVLERGKEVPEVRWCAPGEDAAMEALSGPKGFLGSKARLARYEEKRNDPTVPDALSGLS 238 Query: 247 PYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 PYL G LSP R + + V + + + ++ + Sbjct: 239 PYLHFGHLSPQRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDSLDAAYD 298 Query: 306 PFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 +K H+ +++G T + +AA ++ G MH +RM A +++ Sbjct: 299 WARQTLNDHRGDKREHVYTREQFEKGQTHDKLWNAAQAEMVHFGKMHGFMRMYWAKKILE 358 Query: 364 DLLVDWR--IGEEYFMSQL-LDGDLASNNGGWQWA 395 + + LDG A+ G W+ Sbjct: 359 WSASPEEALEISIWLNDKYELDGRDANGYVGCMWS 393 >gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis raciborskii CS-505] Length = 264 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVLS R+ + + K +NEL WR+ Sbjct: 51 YAKTRNYLTGAVTR-LSPYIRHGVLSLREVREYILNTVENSEDGSK-----LINELGWRD 104 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L T + L + ++G TG ID+ ++L G++ Sbjct: 105 YWQRLYMKLGKGIWENQEEYKTGYHRGDYSHTLPEDIREGKTGMVCIDSFSQELRVTGYL 164 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN +RM AS+++ + W+ G ++F+ LLDGD ASNN WQW AST PYF F Sbjct: 165 HNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVAST-FSHKPYF--F 221 Query: 410 N 410 N Sbjct: 222 N 222 >gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex] Length = 523 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 128/400 (32%), Gaps = 25/400 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R+ DN AL A + + F P RQ F+ L + Sbjct: 82 LYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLGAT---IRQFGFMLKGLEE 138 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ + I F + +S + + ++ + + + +++ + Sbjct: 139 VETECQKLKIEFHLLK----GESQICVPDLITKLKLDAVVADFSPLRVPLSWIDKVKESI 194 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 V D ++P + + + L + L + + + Sbjct: 195 PKNVPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPPVIVHPHPAKTKA 254 Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + + G ++ L L FC+ ++ Y E+R+ P + S Sbjct: 255 KSVDWKAADAYLEVDRTVGEVDWITPGTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSN 314 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSP+L G +S ++C +K + +I RE + + + Sbjct: 315 LSPWLHFGQISAQRCILEVKGYKTKHAKSVDAYMEE---TIIRRELSDNFCFYNTNYDNL 371 Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K W ++ A ++G T + +A+ QL G MH LRM A Sbjct: 372 KGAANWAQETLEVHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRMYWA 431 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ LDG S G W+ Sbjct: 432 KKILEWTETPEEALRIAIYLNDRYSLDGRDPSGYVGCMWS 471 >gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] Length = 824 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 59/410 (14%), Positives = 119/410 (29%), Gaps = 16/410 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L WLR +R +N AL A ++ + + + + S RQ F+ ++ + Sbjct: 40 LYWLRTAMRAHENPALDLAIEFANQLALPLVVYQGLSEKYPYASDRQHRFVIEGMINLAS 99 Query: 71 SLSQKGIVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + ++GI + + + + ++ L + ++ + + Sbjct: 100 EMRERGIHYLPHIERGEHREPYLQKLAAQAAVVITEEMPVDPLRRWTSLASRHTTGPVYT 159 Query: 129 HRVICKSFDDSVLLPPGS---ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 C + + A Y Q + + ++ Sbjct: 160 VDTACVWPMPRMPQSYDRAFAFRDAAGDYYDKNLTLPWDEEQLTSRPTPELADIEPTPIS 219 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 I A G +F + + Y +R+ P TS++ Sbjct: 220 PQNIAEIIAACEIDHTLAAAAETRGGSVAGYERWNQFRQTGLRNYAARRNDPLHPTTSRM 279 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G++SP + + K W ++ + ++ Sbjct: 280 SAYLHYGMVSPLRIAREASAQGGAGAEKYLDELLVWRELAYNYCYFHRAIDRLSTLPRWA 339 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + + + +G T + + + L G +HN LRM L+ Sbjct: 340 QETLAQHAGDRRPNIYSWEQLARGQTDDELWNLTQQSLLRHGELHNNLRMTWGKRLLDWT 399 Query: 366 LVDWRIGEEYF---MSQLLDG-DLASNNGGWQWAASTGNDSVPYFRIFNP 411 LDG D AS GG W + R F+P Sbjct: 400 ASPHDALAMAIDLNHRYALDGRDPAS-YGGLLWCFGL------FDRPFHP 442 >gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105] Length = 426 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 12/191 (6%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSP+++ G LS R+ L E++ + E WRE Sbjct: 28 YSRTRNFLDGAVTG-LSPWITHGYLSVREAAQLLMEKYRLSFE------DKLIFEFAWRE 80 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++H A + + P + + ++G TG IDA + L G++ Sbjct: 81 FFKHAHAELGNGILSDVRRPVWSGKYNQQLPEDI---REGRTGVEAIDAGVALLYETGYL 137 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRI 408 HN +RM AS++V V W++G ++ + LLDGDLASN+ WQW A T PY F Sbjct: 138 HNHVRMWIASYVVHMRKVHWKVGADWMYAHLLDGDLASNHLSWQWVAGT-FSHKPYVFNA 196 Query: 409 FNPTIQGKRFD 419 N ++D Sbjct: 197 DNVKKYAPKWD 207 >gi|297799464|ref|XP_002867616.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313452|gb|EFH43875.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata subsp. lyrata] Length = 557 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW ++DLR+ D+ L A+ +S VI +++ ++ + I +L Sbjct: 31 STAVVWFKHDLRVDDHPGLLASSKHS--SVIPLYVLDRRILSRYTTDTLELAII--ALED 86 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 ++K+L ++G ++ ++ + + R +F + E + Sbjct: 87 LRKTLKKQGSNLML----SYGNAENVIADLVKEVRAHSVFVEEEVEYH 130 >gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii D9] Length = 262 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVLS R+ + + K +NEL WR+ Sbjct: 51 YAKTRNYLTGAVTR-LSPYIRHGVLSLREVREYILNTVENSEDGSK-----LINELGWRD 104 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L T + +L + ++ TG ID+ ++L G++ Sbjct: 105 YWQRLYMKLGKGIWENQEEYKTGYHTEDYSHNLPEDIQESKTGLVCIDSFSQELRVTGYL 164 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN +RM AS+++ + W+ G ++F+ LLDGD ASNN WQW AST PYF F Sbjct: 165 HNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVAST-FSHKPYF--F 221 Query: 410 N 410 N Sbjct: 222 N 222 >gi|15559002|gb|AAL02089.1|AF348458_1 cryptochrome 1a [Hordeum vulgare] Length = 61 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 38/59 (64%) Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 LLD DL S+ GWQ+ + + DS I NP ++G +FDP G ++R WLPEL +PT+ Sbjct: 3 LLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPELARLPTE 61 >gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool] Length = 636 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 74/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%) Query: 16 NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 DLR+ +N AL A + ++ + + P Q R F +V+ L Sbjct: 90 RDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLAFQPT--RRHLSFFIGGAREVEAEL 147 Query: 73 SQKGIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 I F + E + +++E + Sbjct: 148 KSLNIGFELPIVAKKDPKGRLDEANKKIEEVFAALQPALAVCDFNPLRLPTQIVEALARV 207 Query: 130 R----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 D ++P N A + P +A+++ + P P + Sbjct: 208 YGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKLQAMLKEFAVPFPKVEPHPVPWTS 267 Query: 186 GPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + P + R P + +D P + + + + Y + R+ P Sbjct: 268 KQLFPLDEDRVLSAVKPDPPEPLDSWKPGTKAALRLLQSFATPQNIAKYGKARNDPLADC 327 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+ G ++ ++C + + + G ++++E++ R F+ Sbjct: 328 QSDLSPYIHFGHIAVQRCLMEVSKLKDTTGDRAVHEGVRAFIDEVVVRSQLSDNFVFFNP 387 Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + + A ++G T + +AA QL G MH L Sbjct: 388 HYDDIKGAPDWAKQTLEKHAKDKREPQYEFTALEEGKTYDSLWNAAQLQLVRDGKMHGYL 447 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS----TGNDSVPYF 406 RM A L++ + LDG + G W+ G P F Sbjct: 448 RMYWAKKLLEWTKSPQEALKTAIALNDKYHLDGTDPNGVTGCMWSIGGVHDQGFKERPVF 507 Query: 407 ---RIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD + F+R + Sbjct: 508 GKIRYMNYPGCERKFDVKA-FVRKF 531 >gi|167903518|ref|ZP_02490723.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC 13177] Length = 224 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL +L D + + S+ ++++R+Y + D Sbjct: 107 LHGSLR----ALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162 Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 ++ L + I ++F+ S+L PG ++N + Y+V++ + +A ++ V A Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPP 217 >gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans AK-01] Length = 456 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 129/393 (32%), Gaps = 15/393 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + V + + R F+ L + Q+ Sbjct: 24 LYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPEANYRHYLFMLEGLAETQR 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L ++GI + S +++ L +++ +V + Sbjct: 84 QLRERGIPLVVLENSPPLAALDLGKKAALIVTDKGYMRHQREWRAQVAEQASCQVVQVET 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + + ++ + F + ++ +R + + L+ P + Sbjct: 144 DVIVPVNIASQKAEWAARTIRPKINRELDNFLLLPEKCALKNKVRDFDIQGLDLSDPASL 203 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + P + F G A + KF ++ + Y + P + S + PYL Sbjct: 204 LKNLGMPETP-PGVSAFFKGGASAAQKRMDKFIQKSLDNYSRHHNRPDLADVSGMGPYLH 262 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +S P++ A ++ RE + + F P+ W Sbjct: 263 FGQVS---AAALALRVKNLKDADPEAQAAYLEQIIVRRELAMNFVHFTPNYDQYACLPTW 319 Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + T P +AAMR++ G+MHN +RM +++ Sbjct: 320 AQKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRMYWGKKILEW 379 Query: 365 L---LVDWRIGEEYFMSQLLDG-DLASNNG-GW 392 W + LDG D S G GW Sbjct: 380 SPSPQKAWDVLLYLNNKYFLDGRDPNSYAGVGW 412 >gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea] gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea] Length = 491 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 76/445 (17%), Positives = 141/445 (31%), Gaps = 35/445 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V +A G +ARQ F+ L +Q Sbjct: 30 VYWMFRDQRVRDNWALIHAVDEANKRNAPVAVAFNLFDGFKGANARQLGFMLRGLKLLQA 89 Query: 71 SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + I F Q + +E + + ++ + L + + L KR+ Sbjct: 90 SLHNSLHIPFFLFQ----GEVVETIPKFLVECGASLLVTDFTPLREIRGFKEELCKRVGD 145 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL-PVPA 181 V D ++P + + L+ L + P Sbjct: 146 SVSIHEVDAHNVVPVWEASSKLEYGARTIRTKINKLLPTYLTDYPILQPPNCSWESSSPV 205 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 I+ + P + F +++ Y R+IP Sbjct: 206 IQWDQLIEDRLKKGAEVPEIDWCKPGETAALEVLKGSQNGFLTKRLKSYATDRNIPLKPG 265 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL G +S ++C + + ++ RE + + P+ Sbjct: 266 ALSGLSPYLHFGQISAQRCAFEARNVRKVAPEAVDAFTEEL---IVRRELADNFCYYQPN 322 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354 W K + S + + T P+ +A+ ++ G MH +R Sbjct: 323 YDSLMGAWEWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQLEMVHFGKMHGFMR 382 Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS----VPYF- 406 M A +++ +DG + G W+ +D P F Sbjct: 383 MYWAKKILEWTSGPEEALAIAIYLNDKYEMDGRDPNGYVGCMWSICGLHDQGWRERPVFG 442 Query: 407 --RIFNPTIQGKRFDPQG--TFIRH 427 R N ++F+ G ++R Sbjct: 443 KIRYMNYAGCKRKFNVDGYIAYVRK 467 >gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides] Length = 247 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 4/229 (1%) Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227 + + + +I+ P G + + + Sbjct: 22 KEISDHCKPIDADSIKFDIPSLDELEFDESGLNPLKYPGGETEGLRRLNMYMARREWVCK 81 Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 + T+ LSPY+S G LS + +++LKE + S L +L+W Sbjct: 82 FEKPNSSPNSLEPSTTVLSPYISHGCLSAKLFYHKLKEVLNSMR--HTEPPVSLLGQLMW 139 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 RE + + +I W K+ L AW +G TG+P +DA MRQL G Sbjct: 140 RE-FYYTAGAGTENFDKMVGNSVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEG 198 Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 W+H+ R + A FL + DL + W G + F LLD D + N G W W Sbjct: 199 WIHHLARHMVACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247 >gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1] Length = 469 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 60/392 (15%), Positives = 122/392 (31%), Gaps = 6/392 (1%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++A + + + + R F+ L Q+ Sbjct: 26 LYWMQQSARAEHNPALEYAIQQANAAKLPLLVGYGLMDGYPEANVRHYRFLLEGLQDCQR 85 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ + I F + + +++ L +++ + Sbjct: 86 TLAHRKIPFALQRGPPDEVALKLSRQAALVVCDRGYLRHQKQWRQTLAAKASCPVVQVEA 145 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + + ++++++ + ++ D L V + L V Sbjct: 146 DVVVPVEAASGKAEYAARTLRPKIHRLWEEYLVRPTSTPLEVDSLKLGVKGLNL-DDVGA 204 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 D + F G A +LR F + Y E R P S +S YL Sbjct: 205 VLDRMALDRSVPPVHHFFRGGTSEAKRVLRGFVTRHLPEYQENRPHPETDHVSHMSKYLH 264 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G +SP +E + + + + F + + + Sbjct: 265 FGQISPVVVALAAREARALRPQRDTFLEELIVRRELAQNFAEYTPQYDDYTSLPAWARKT 324 Query: 311 TEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 +K + Q T P +AAMR++ G+MHN +RM +++ Sbjct: 325 LAAHAGDKRPFHYTKAQLEQARTHDPYWNAAMREMRYTGYMHNAMRMYWGKKILEWGRTP 384 Query: 369 WRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 + LDG A++ W Sbjct: 385 EEAYRTALTLNNTYFLDGRDANSFTNIGWVFG 416 >gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27] Length = 495 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 67/414 (16%), Positives = 126/414 (30%), Gaps = 30/414 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+++ R+ DN L AA +D + V + SAR FI + Sbjct: 38 LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQYEINEVRRDKLLEKRL 127 GI +Q+ D +D + V E ++ + L Sbjct: 98 QAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGVRERVARFAQRVTCRVL 157 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 +C + ++ ++ + + + ++D+ + ++R T Sbjct: 158 AVDSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLATSLRATVA 217 Query: 188 VTPSNIPRFFDYP---------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 +P P G A +F + + Y E Sbjct: 218 EGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWTRFLEHGLPQYDE 277 Query: 233 QRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELI 286 +R+ +GTS+LSPYL G +S + ++ +D ++ + Sbjct: 278 RRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGVGAANLDAFVQQITTWRELSYNWC 337 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 R ++ P+ + L+ TG + +AA +L Sbjct: 338 VRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLER---AQTGDRLWNAAQTELVQE 394 Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 G +HN RM+ +D LDG A++ GG W Sbjct: 395 GIIHNYPRMLWGKTVLLWTRDYEDARTWLFHLNDKYALDGRDANSVGGIMWCLG 448 >gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8] Length = 407 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 15/182 (8%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y R+ T LSPYL G L+ + ++ +K++F S L EL WR Sbjct: 54 QYGRNRNFINGAVT-HLSPYLRHGCLNLNEVFSFVKQKFGLQG-------ESLLMELAWR 105 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F+R + + + + P + KQ TG P +D +++L G+ Sbjct: 106 DFWRQVWFYEGNAIFSEMEQPKVNLDYQPLSVSV----KQANTGLPCMDGFIKELLDTGY 161 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHN RM AS++V L VDWR ++F + LLDGD ASN+ WQW AST S PY+ Sbjct: 162 MHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFASNHLSWQWIAST-FSSKPYY-- 218 Query: 409 FN 410 FN Sbjct: 219 FN 220 >gi|167563425|ref|ZP_02356341.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147] Length = 188 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 7/173 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M A +++ +VW R+DLR++D+ AL A S VI ++ E + + Sbjct: 1 MSAVLSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 ++ SL + +L+ G D + + S+ +++NR+Y + + D Sbjct: 59 LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114 Query: 121 KLLEKRLQHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 ++ L+ R I ++ L PG ++ + + Y+V+T + +A ++ V A Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHA 167 >gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1] gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1] Length = 467 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 26/422 (6%) Query: 23 NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 N AL A ++ + + + +AR F+ L +L ++GI Sbjct: 36 NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + + +I+ L ++ E+ R+ + + Sbjct: 95 FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + + ++ K++ + + V L G Sbjct: 155 TSTKHEYAARTLRPKLRKLWDDYLDPVEPRTVDHPAEGLIQRLKLRDGLDVSDPEKLLAT 214 Query: 199 YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F G A L++F + Y R+ P S +SPYL G +S Sbjct: 215 LTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311 P + + ++ RE + + +P Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331 Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + + +G T + AMR++ G+MHN+LRM +++ Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420 LDG A++ W + +IF Q + +FD Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451 Query: 421 QG 422 +G Sbjct: 452 KG 453 >gi|332141439|ref|YP_004427177.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551461|gb|AEA98179.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep ecotype'] Length = 165 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYAS 64 + W R+DLR+ D A+ C + ++V +I + + + F+ + Sbjct: 17 GVFWFRHDLRLHDQPAIAELC-TAVSQVTFTYILDDKCFDDAAFGFSPMGKHRHTFLLQT 75 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS 96 L +++ L+Q+G + + + ++ L++ Sbjct: 76 LSDLKQQLNQRGHELLILKGNTAECIVQLLNA 107 >gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 465 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 126/404 (31%), Gaps = 17/404 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R+ DN L A + + + + + P+ RQ F+ A L + Sbjct: 23 LYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLE---AGLRQYAFLLAGLRE 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ L GI F D E + V + + + K + + Sbjct: 80 VEHGLEAIGIPFFLL----LGDPAEVIPDLARYLAVGAIITDFDPLRIKRGWLKRIAAEV 135 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q V + V S R L+ VP Sbjct: 136 QIAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWNLDWPA 195 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 S P GE A +L +F E++ Y R+ P TS+LS Sbjct: 196 NDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAVGRNDPNGGATSRLS 255 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 +L G+LS ++ + + K + + F H A+ + Sbjct: 256 AHLHFGMLSAQRVALVVIQADAPQEDKDAFLEQLVVRRELAENFCLHEPAYDSAESFPDW 315 Query: 307 FIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + +L +Q T P+ +AA R++ G+MH LRM A +++ Sbjct: 316 ARRTLDAHQGDPRPYLYSRDELEQACTHDPLWNAAQREMLATGYMHGYLRMYWAKKILEW 375 Query: 365 LLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 LDG + G WA G P+ Sbjct: 376 SKSPEEAMAVAVRLNDRWELDGRDPNGYAGLAWAIG-GVHDRPW 418 >gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis] Length = 444 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 93/312 (29%), Gaps = 34/312 (10%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64 +VW R DLR+ DN+AL A + ++ V+ P ++ + ++ F+ + Sbjct: 110 GIVWFRGDLRLHDNEALARAQAEC-SSLLPVYCFDPREYGKSPQGYDKTGPYRAQFLAEA 168 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ +L G E + + ++ + + ++R + + Sbjct: 169 VADLRAALRAAGSELVVR----VGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRAEAAVR 224 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHAL-----QMYKVYTPFRKALIQNLVQADLRSLPV 179 + + L L +L K ++ + A + Sbjct: 225 AAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQIGGVAVRAALPAPQELHGL 284 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----------ILRKFCKEKVYY 229 P P + + P A IGE + Sbjct: 285 PLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSPRGGEGEALRQLQRFVAAAGGQAA 344 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---------FS 280 ++ ++P+L+ G LSPR+ + + A Sbjct: 345 AGPVAAAHGSNFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGATPAASRPLQAPLEW 404 Query: 281 WLNELIWREFYR 292 EL WR+F+R Sbjct: 405 VRFELYWRDFFR 416 >gi|312899443|ref|ZP_07758773.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470] gi|311293313|gb|EFQ71869.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470] Length = 220 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 11/221 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128 + + Q + H + ++ + +++N +RD+ + + Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115 Query: 129 HRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I L I + Y+V+TP+ + + + + Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + P + + + + +GE+ A L F Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDMICQ 216 >gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis] gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis] Length = 489 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 70/454 (15%), Positives = 142/454 (31%), Gaps = 38/454 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V +A + G ARQ F+ L +Q Sbjct: 28 IYWMFRDQRLRDNWALIHAVDQANKANVPVAVAFNLFDQFLGAKARQLGFMLKGLRLLQG 87 Query: 71 SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + ++ I F Q + + + + + + L + + + R+ Sbjct: 88 KIEERLQIPFFLFQ----GAAEDTIPQFLGECGASLLVTDFSPLREIRKSKDEICMRISD 143 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------VQADLRSLPVPAIR 183 V D ++P + + + ++ A + Sbjct: 144 TVTIHEVDAHNIVPIWVASEKLEYSARTIRSKINKRLPDYLIDFPALRPPNTMWSAAANK 203 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG---EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 T + I+ P + + F +++ Y R+ P Sbjct: 204 SIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAMEVLMGTKNGFLTKRLKNYSTDRNNPLKP 263 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSPYL G +S ++C E + P+S ++ RE + + P Sbjct: 264 QGLSGLSPYLHFGQISAQRC---ALEARKAQKLCPQSVDSFLEELIVRRELADNFCFYQP 320 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRL 353 + W + S + + T + +A+ ++ G MH + Sbjct: 321 HYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERAQTADLLWNASQLEMVYYGKMHGFM 380 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405 RM A +++ +DG S G W+ G + Sbjct: 381 RMYWAKKILEWTRGPEEALAISTYLNDKYEIDGRDPSGYVGCMWSI-CGVHDQGWKERPI 439 Query: 406 ---FRIFNPTIQGKRF--DPQGTFIRHWLPELNN 434 R N ++F D T+++ ++ E+ Sbjct: 440 FGKIRYMNYAGCKRKFNVDSYITYVKRFVSEIKK 473 >gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 512 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 61/413 (14%), Positives = 127/413 (30%), Gaps = 33/413 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A+ A + + + V+ RQ F+ L++ Sbjct: 60 VYWMWRDCRVQDNWAMIYAQYLAFKTKSPLYIVYCLPKFYLNST---RRQYQFLIEGLIE 116 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + ++ I F D + L + + + + + +++ + + L Sbjct: 117 LSEECAELDITFVILD----DSADVVLIDWVRKHDICAVVCDFNPLQLQIKSTVNILQNL 172 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V D ++P Y + A ++NL+ + P + Sbjct: 173 PADVYFAQVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSI 232 Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + +N + G A+ L F + +Y Y P Sbjct: 233 ESSTNTSIDWSNLLSSRNVDHSVKRIKWTEAGYNAAILRLATFIQCYIYNYKNSIHNPVS 292 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKSGAFSWLNELIWREF 290 S LSP+ G +S ++ L+ ++ V + + N L REF Sbjct: 293 SKQSDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKLKNNIEKFIENCLYRREF 352 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIG 347 + F + P ++ + + + T I + A L G Sbjct: 353 ADNFCYFNLNYITFNAASPQIKRYIAKHLRYYTYSLNELEYSQTHDNIWNKAQEDLRENG 412 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL---LDGDLASNNGGWQWAAS 397 ++ +R+ A +++ +DG S G +A S Sbjct: 413 KIYPFIRVYWAKKILEWTSTPEEALNRAIYLNQKYAVDGCDPSGYVGCLYAMS 465 >gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101] Length = 340 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 11/198 (5%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ G LS + + + + + +NEL WR+ Sbjct: 97 YAKGRNFLDGPVTR-LSPYIRQGALSLAEVRDAVFAKLRSR-----TDGEKLINELGWRD 150 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L T L +G TG +D + +L++ GW+ Sbjct: 151 YWQRLWHQLGHGIWRDQEELKTGHHPGAYSPELPGDIAEGRTGLACMDGFITELHSTGWL 210 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A++LV + W+ G ++F+ LLDGD ASNN WQW AS+ PYF F Sbjct: 211 HNHARMWLAAYLVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASS-FSHKPYF--F 267 Query: 410 NPTIQGKRFDPQGTFIRH 427 N +R+ G++ R Sbjct: 268 N-RSNLERY-SHGSYCRR 283 >gi|167895132|ref|ZP_02482534.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894] Length = 69 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLLQV 68 ++ SL + Sbjct: 59 LHGSLRAL 66 >gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414] Length = 280 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS R+ + + E+ D + A +NEL WR++++ L Sbjct: 63 TRLSPYIRYGVLSLREVRDDVLEKVQD-----PNDASKLINELGWRDYWQRLYVKLGDRI 117 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T + L G TG ID+ ++L + G++HN +RM A+++V Sbjct: 118 WEDQEEYKTGYSPKDYADQLPADITAGTTGMVCIDSFSQELRSTGYLHNHMRMWLAAYIV 177 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 + W+ G ++F+ LLDGD ASNN WQW AST PYF FN Sbjct: 178 HWRRIRWQAGAKWFLEHLLDGDPASNNMSWQWVAST-FSHKPYF--FN 222 >gi|227505176|ref|ZP_03935225.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum ATCC 6940] gi|227198225|gb|EEI78273.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum ATCC 6940] Length = 178 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M+ L W+R+DLR+ DN AL A S +VIA + P + + + + SL Sbjct: 1 MTT-LYWIRDDLRLHDNPALTWAA--SRGEVIACVLDEPAYPGSRPLGSATAWWRERSLS 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 ++ +L+ + D+ L ++ +V+ + +NR+Y Sbjct: 58 RLAANLASYNVPLYRLN----GDARSVLPAFAASHKVSAVCWNRRYH 100 >gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC 33386] gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC 33386] Length = 453 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 67/448 (14%), Positives = 142/448 (31%), Gaps = 31/448 (6%) Query: 3 ATTAMSVH----LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISA 55 M + + W++ +R + N +L A H ++ ++ +F + ++ Sbjct: 10 NNKKMDKNGDFIIYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKF---SEMNE 66 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115 R +F++ SL +K+L +GI F S + L+ + +Y Sbjct: 67 RSCYFLFESLKDAEKNLKDRGIRFIVLDSSPL--ITKILEYSKRSVCIITDRAYLKYLRK 124 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175 ++ + + K++ L ++ Sbjct: 125 IREEVGEKVSVRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKDFEYTKYE 184 Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + I+ + + + + F GE A IL F EK+ Y + Sbjct: 185 MNYLDEIKTDFDLEKIHEIIESLNIDKTVRKSNYFTGGENTAKKILENFISEKLEGYSKF 244 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ P ++ S LSPYL G +SP + + E ++ EL Y Sbjct: 245 RNNPELEYQSNLSPYLHFGNISPLFVAKEISKSEKNRESLEEFLEELIVRRELAINFIYY 304 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + K + ++ ++ + ++ T ++A +++ G MH Sbjct: 305 NQDYDKFQNMTYLWAYETMNKHKNDQKEYVYSLEILEKSETHDEYWNSAQKEMMVTGKMH 364 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVP--- 404 +RM A +++ E +DG + G W + + Sbjct: 365 GYMRMYWAKKIIEWTEKFEEAYEIIKYLNNKYFIDGRDENGYAGIAWCFGKHDRAWNERN 424 Query: 405 ---YFRIFNPTIQGKRFDPQGTFIRHWL 429 R N ++FD I ++ Sbjct: 425 IFGKLRYMNSNGLKRKFD-----IEKYV 447 >gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864] Length = 559 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471 +DP+G F+R ++P L N P++YI+ P S + ++YP PIVDH++ C + Sbjct: 318 YDPEGKFVRRFVPALRNFPSEYIYMPWSAPLEVQREAGCIVGVDYPKPIVDHEQVCRTNM 377 Query: 472 NQYYAAK 478 + A Sbjct: 378 ERMRDAY 384 Score = 40.2 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%) Query: 12 VWLR-NDLRITDNKALYAACH 31 W R N LR+ DN AL AA Sbjct: 41 HWFRINALRLDDNPALLAAIE 61 >gi|87300685|ref|ZP_01083527.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] gi|87284556|gb|EAQ76508.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] Length = 299 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY+ GV+S Q + +++ L EL WR++++ L Sbjct: 96 LSPYIRHGVVSLAQVRDLVQQRMAGGPEPVS---EKLLQELAWRDYWQRLWLRLGDGLWE 152 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 T E L +G TG IDA RQL+ GW+HN RM A+++V Sbjct: 153 NLEPLKTGHPEAAYAPELPGDIDEGRTGLACIDAFARQLSDTGWLHNHARMWLAAYVVHW 212 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 V W+ G +F+ LLDGD ASNN WQW AS+ + PY FN Sbjct: 213 RRVRWQAGAHWFLRHLLDGDPASNNLSWQWVASS-FSAKPYL--FN 255 >gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120] gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120] Length = 278 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVLS + N + + +K A +NEL WR+ Sbjct: 51 YAKTRNFLTGDVTR-LSPYIRYGVLSLGEIRNYVLD-----NVKHPDDAKKLINELGWRD 104 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L + T S L K+G TG ID+ R+L G++ Sbjct: 105 YWQRLYIKLGNGIWEDQEEYKTGYTPAEYASDLAADIKEGKTGLVCIDSFSRELQETGYL 164 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN +RM A+++V + W+ G ++F+ LLDGD ASNN WQW AST PYF F Sbjct: 165 HNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 221 Query: 410 N 410 N Sbjct: 222 N 222 >gi|148243387|ref|YP_001228544.1| DNA photolyase FAD binding subunit [Synechococcus sp. RCC307] gi|147851697|emb|CAK29191.1| DNA photolyase FAD binding domain [Synechococcus sp. RCC307] Length = 330 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSPY+ GVLS + + + K +NEL WR+ Sbjct: 102 YARSRNHLEGMVTG-LSPYIRHGVLSLAEVRDAVFRRIRHRDEGGK-----LINELGWRD 155 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + T + L Q G TG +D QL T GW+ Sbjct: 156 FWQRMWLELGDAIAEDQEEYKTGHPASSYSRELPQDLCDGCTGLACMDGFHEQLVTTGWL 215 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A+++V V WR G ++F+ LLDGD ASN+ WQW AS PYF F Sbjct: 216 HNHARMWLAAYVVHWRRVHWRAGADWFLEHLLDGDPASNHLSWQWVASC-FSHKPYF--F 272 Query: 410 N 410 N Sbjct: 273 N 273 >gi|32475803|ref|NP_868797.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] gi|32446346|emb|CAD76174.1| probable deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] Length = 837 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 122/402 (30%), Gaps = 17/402 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W+ N LR +N AL AA + + + + + S R FI V Sbjct: 29 MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88 Query: 69 QKSLSQKGIVF------QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 Q+ L +GI + + + D ++ + + + Sbjct: 89 QRELQARGITYAFHLERHGQRGPHLRDLCRRAAVLVSEEMPVAPIACWVERLRSLVTTPI 148 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181 + V +S D ++ + + L NL+ A Sbjct: 149 MLVDTSCIVPSQSVDAVPTRAFEFRRLIQSELENRLSRPYEELPANLLPAKFTGPLGFAP 208 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 I L I + P G + +F ++ + Y QR+ P Sbjct: 209 IDLQDVDLAELISQCKVDHSVGPVADTPGGMRAGYARWDRFREKSLTQYSRQRNHPDDPL 268 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S+LS YL G++SP + + + E+++R H+ Sbjct: 269 GVSRLSGYLHYGMISPFRIAREAAA----MGARKYVDELVVWREMVFRFCLEHVEDLDTM 324 Query: 301 VCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + K EK + + +G + + + A R L G +H+ LRM Sbjct: 325 AVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGELHHNLRMTWG 384 Query: 359 SFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 + + + +DG + G W+ Sbjct: 385 KAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFG 426 >gi|186686489|ref|YP_001869685.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme PCC 73102] gi|186468941|gb|ACC84742.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme PCC 73102] Length = 295 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVLS R+ + + ++ +NEL WR+ Sbjct: 55 YAQTRNFFTGAVTR-LSPYIRYGVLSLREIRDYVLDQVQQKNDA-----TKLINELGWRD 108 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ L T L Q +QG TG ID+ L G++ Sbjct: 109 YWQRLYVKLGDEIWKDQEEYKTGYTVAEYLPELPQDIRQGTTGRVCIDSFSHDLKETGYL 168 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A+++V + W+ G ++F+ LLDGD ASNN WQW AST PYF F Sbjct: 169 HNHARMWLAAYIVHWRRIGWQAGAKWFLEHLLDGDPASNNMSWQWVAST-FSQKPYF--F 225 Query: 410 N 410 N Sbjct: 226 N 226 >gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis] gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis] Length = 589 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 76/464 (16%), Positives = 125/464 (26%), Gaps = 57/464 (12%) Query: 11 LVWLRNDLRITDNKALYAACH------------------------NSDAKVIAVFIATPE 46 + W+ D RI DN AL A +S+ +V F P Sbjct: 52 VFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGGGSSSSSSSEPQVAVAFNLVPA 111 Query: 47 QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--- 103 G ARQ F+ L ++Q L KGI F + D L + Sbjct: 112 FL---GAGARQFGFMLRGLRELQPKLEAKGIAFFLLK----GDPARTLPDLVTRLGAGLL 164 Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + + + H V + + + K++ + Sbjct: 165 VTDYSPLRLGRQWREQVCSSVPVPVHEVDAHNVVPVWVASDKREVGARTLRPKIHKHLPE 224 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN-----ALHI 218 L L GE Sbjct: 225 FLTDFPEVPQLPPWSHEVKPEPVNWETLLEEVLTRGSAVPEVDWCKPGEDAALQALQGPA 284 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 Y ++ D + S LSPYL G L+P++ + +S Sbjct: 285 GFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAALEAAKHRAKFKAAVESFL 344 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPI 335 + + + H Y S+ + T + L +Q G T + Sbjct: 345 EELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKREFLYTREQLEAGRTHDEL 404 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGW 392 +A ++ +G MH +RM A +++ E LDG S G Sbjct: 405 WNACQWEMVHVGKMHGYMRMYWAKKILEWTPGPEEAIEIAIYLNDRYELDGRDPSGYVGV 464 Query: 393 QWAAS----TGNDSVPYF---RIFNPTIQGKRFDPQGTFIRHWL 429 W+ + G P F R N ++FD I+ + Sbjct: 465 MWSMAGIHDMGWTERPIFGKIRYMNYNGCKRKFD-----IKAYC 503 >gi|302810940|ref|XP_002987160.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii] gi|300145057|gb|EFJ11736.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii] Length = 987 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF---IYASLLQ 67 +VW + DLR+ D+ L AA + VI +F+ P +R F + ++ Sbjct: 81 IVWFKKDLRMDDHPGLVAAASSGYDAVIPLFVFDPMLFRGW-----SQDFVEALVEAVAD 135 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L G + + + Q +F + E + L Sbjct: 136 LKLALQAAGSDLAIR----VGSAQDVMYKLVHQVNPRDVFTEDEIEEGPRKIVCDTWSVL 191 Query: 128 QHRVICKSFDDSVLLPPGSI 147 + + + Sbjct: 192 KAKCQNEPALRQWTASLHEN 211 >gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera] Length = 543 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 62/382 (16%), Positives = 123/382 (32%), Gaps = 22/382 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V IA + G ARQ F+ L + + Sbjct: 25 VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 84 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L Q I S+ ++IE + ++ + + L + + + + KR+ Sbjct: 85 DLEQTLQIPLL---DSHSGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKRVGK 141 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188 +V D ++P + L+ + L+ P T Sbjct: 142 KVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQS 201 Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + + + + + F +++ Y R+ P Sbjct: 202 IDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPG 261 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL G +S ++C E + P++ ++ RE + + P Sbjct: 262 ALSGLSPYLHFGQISAQRC---ALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPR 318 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + W K + S + T P+ +A+ ++ G MH +R Sbjct: 319 YNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFMR 378 Query: 355 MITASFLVKDLLVDWRIGEEYF 376 V ++ + Sbjct: 379 QFYFDKYHLFCFVSFQCCFMFL 400 >gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes] gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes] Length = 504 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 120/392 (30%), Gaps = 11/392 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W+ D R+ DN AL A + + + + + + R F+ L +VQ Sbjct: 73 LYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLRHYSFLLKGLEEVQ 132 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K I F + + L + + + ++ + ++K L Sbjct: 133 KECKHLNIQFHLLH----GAAGDVLPGFVTGHNFGAVVTDFSPLREPLQWLEAVKKGLPE 188 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188 + D ++P + L+ + L L + T Sbjct: 189 DIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKHPFSATKTAKA 248 Query: 189 TPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + G + L +L F ++ + QR+ P SQLS Sbjct: 249 VDWDKTLASLKVDRTVGEPKLAKPGTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLS 308 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L G LS ++ ++++ + FY Sbjct: 309 PWLRFGQLSAQRVALQVRKNSSPSVPAFIEELVVRRELTDNFCFYNKNYDSVTGAYEWAQ 368 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + + +++ T + +AA Q+ T G MH LRM A +++ Sbjct: 369 KTLKDHAKDKREYLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLRMYWAKKILEWST 428 Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 LDG + G W+ Sbjct: 429 SPEEALSIALYLNDRYELDGQDPNGFVGCMWS 460 >gi|255539721|ref|XP_002510925.1| hydrolase, putative [Ricinus communis] gi|223550040|gb|EEF51527.1| hydrolase, putative [Ricinus communis] Length = 691 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 64/183 (34%), Gaps = 6/183 (3%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W + DLR+ D+ L A ++S + ++ +++ + S + +L ++ Sbjct: 45 AILWFKQDLRVDDHFGLLQASNHSPSSLLPLYVFDHIILSR--YSDEMLEIVLFALQDLR 102 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL ++G F + + + T +F + E + +++++ L Sbjct: 103 NSLKEQGSNLMIR----FGSAEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQNLTK 158 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + ++L + + +Q V + + +PA + Sbjct: 159 SQPHLDVNPKIVLWQTPFYDIKNLKDLPASHDHFKKLQLPVTSPILPPTLPATPMELDWG 218 Query: 190 PSN 192 Sbjct: 219 SMP 221 >gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium chloromethanicum CM4] gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium chloromethanicum CM4] Length = 467 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 26/422 (6%) Query: 23 NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 N AL A ++ + + + +AR F+ L +L ++GI Sbjct: 36 NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + + +I+ L ++ E+ R+ + + Sbjct: 95 FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + ++ K++ + + + V L G Sbjct: 155 VSTKHEYAARTLRPKLRKLWDDYLEPVEPLTVDHPAEGLIQRLKLKDGLDVSDPEKLLAK 214 Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F G A L++F + Y R+ P S +SPYL G +S Sbjct: 215 LTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311 P + + ++ RE + + +P Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331 Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + + +G T + AMR++ G+MHN+LRM +++ Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420 LDG A++ W + +IF Q + +FD Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451 Query: 421 QG 422 +G Sbjct: 452 KG 453 >gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299] gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299] Length = 469 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 8/131 (6%) Query: 10 HLVWLR-NDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 H+VW+R DLR+ D+ L+AA + ++ +F+ PE+ + ++ ++ ++ + Sbjct: 72 HIVWIRVGDLRVHDHPGLHAASLLPPSVPIVPLFVFDPEEAANTTPAFQRL--VHEAVRE 129 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ +L +G ++ + + L R+ E + + + Sbjct: 130 LRVALRDRGADLVVR----VGSPATHVERIAKETGASSLSCRRELEWSRMSTHRAALAAA 185 Query: 128 QHRVICKSFDD 138 + + + Sbjct: 186 RGAGVESIHEW 196 >gi|319954988|ref|YP_004166255.1| DNA photolyase fad-binding protein [Cellulophaga algicola DSM 14237] gi|319423648|gb|ADV50757.1| DNA photolyase FAD-binding protein [Cellulophaga algicola DSM 14237] Length = 378 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 10/195 (5%) Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + P + I ++ Y R+ + LSPYL+ GV+S +Q + Sbjct: 4 FPNFLNPEFPTDMDAIQKRIAHVDPRKYASSRNYIDGSVSY-LSPYLARGVISTKQVYQS 62 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 L E S A ++ EL WR++++ + + P ++ + Sbjct: 63 LLER-----GFTISNAEKFIQELAWRDYWQQVWIHKENAIDSDLKHPQ----PTVENYEI 113 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 + +G TG ID A+ L G+MHN LRM AS W+I ++ LLD Sbjct: 114 PKIVAEGTTGIIAIDEAISLLYKTGYMHNHLRMYIASIACNVAKSHWKIPAQWMYYHLLD 173 Query: 383 GDLASNNGGWQWAAS 397 D ASN WQW A Sbjct: 174 ADWASNALSWQWVAG 188 >gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4] gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens DM4] Length = 467 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 61/422 (14%), Positives = 120/422 (28%), Gaps = 26/422 (6%) Query: 23 NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 N AL A ++ + + + +AR F+ L +L ++GI Sbjct: 36 NPALELAIEEANRLELPLLVCFGLLDGAN-GFPEANARHYAFLLQGLADAAAALEKRGIA 94 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + + +I+ L ++ + R+ + + Sbjct: 95 FLLRRATPAEVAIDLSADAALLVLDRGYLAIQKRWYGAIEREAQCRIVQVEGDVVVPLET 154 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + ++ K++ + + + V + L G Sbjct: 155 VSTKHEYAARTLRPKLRKLWDDYLEPVEPRGVDHPAKGLIQRLKLKDGLDVSDPEKLLAK 214 Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F G A L +F + Y R+ P S +SPYL G +S Sbjct: 215 LTLDTTVGPVKRFRGGHTEAAGHLERFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311 P + + ++ RE + + +P Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331 Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + + G T + AMR++ G+MHN+LRM +++ Sbjct: 332 LAEHADDPRPKLYSEEELAAGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420 LDG A++ W + +IF Q + +FD Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451 Query: 421 QG 422 G Sbjct: 452 NG 453 >gi|327540991|gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 837 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 121/402 (30%), Gaps = 17/402 (4%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 + L W+ N LR +N AL AA + + + + + S R FI V Sbjct: 29 MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88 Query: 69 QKSLSQKGIVF------QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 Q+ L +GI + + + D ++ + + + Sbjct: 89 QRELQARGITYAFHLERHGQRGPHLRDLCRRAAVLVSEEMPVAPIACWVERLRSLVTTPI 148 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181 + V +S D + + + L NL+ A Sbjct: 149 MLVDTSCIVPSQSIDAVPTRAFEFRRLIQSDLENRLSRPYEELPANLLPAKFTGSLGFAP 208 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 I L I + P G + +F ++ + Y QR+ P Sbjct: 209 IDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNHPDDPL 268 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S+LS YL G++SP + + + E+++R H+ Sbjct: 269 GVSRLSGYLHYGMISPFRIAREAAA----MGARKYVDELVVWREMVFRFCLEHVEDLDTM 324 Query: 301 VCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + K EK + + +G + + + A R L G +H+ LRM Sbjct: 325 AVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGELHHNLRMTWG 384 Query: 359 SFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 + + + +DG + G W+ Sbjct: 385 KAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFG 426 >gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 18/218 (8%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S LSPYL +++ + N + ++ E+ WR +++ + Sbjct: 107 NHTHVSTLSPYLRCRLITESEVVNAVLHRHSPAAA------EKFVQEVFWRTYWKGWLEL 160 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+V + + L W +G TG DA R+L G++HN R Sbjct: 161 RPAVWTQYQMALDQAWNDVQTQAGLRARWENACRGETGIHCFDAWARELVETGYLHNHAR 220 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413 M AS + L + W +G ++F+ LLDGD ASN GW+W A Y R N + Sbjct: 221 MWFASIWIFTLELPWELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISK 280 Query: 414 QGK-RFDPQ----GTFIRHWL---PELNNVPTQYIHAP 443 + RF P+ G I PE ++P P Sbjct: 281 FTENRFHPKWQLAGEAIPRHAPLPPEPRSLPAGDAFDP 318 >gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera] Length = 514 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 82/463 (17%), Positives = 148/463 (31%), Gaps = 46/463 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V IA + G ARQ F+ L + + Sbjct: 37 VYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHR 96 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L Q I F Q F+ S LDS+ + + + L + + + + KR+ Sbjct: 97 DLEQTLQIPFFLFQAYTFEISASLLDSHSVWEYGASLLVTDFSPLREVQKWKEEICKRVG 156 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGP 187 +V D ++P + L+ + L+ P T Sbjct: 157 KKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQ 216 Query: 188 VTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + + + + + F +++ Y R+ P Sbjct: 217 SIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKP 276 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 G S LSPYL G +S ++C E P++ ++ RE + + P Sbjct: 277 GALSGLSPYLHFGQISAQRC---ALEAKKIQKNCPQAVDVFLEELIVRRELADNFCFYQP 333 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRL 353 + W K + S + T P+ +A+ ++ G MH + Sbjct: 334 RYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFM 393 Query: 354 RMIT--------ASFLVKDLLVDWRIGEEYFMS-------QLLDGDLASNNGGWQWAAST 398 R + K +L R EE +DG + G W+ Sbjct: 394 RQEMQDITILEIQMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSI-C 452 Query: 399 GNDSVPY--------FRIFNPTIQGKRFDPQG--TFIRHWLPE 431 G + R N ++FD G +++ + E Sbjct: 453 GVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAYVKRLVTE 495 >gi|300957649|ref|ZP_07169841.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1] gi|300315626|gb|EFJ65410.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1] Length = 58 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ + Sbjct: 1 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQLN 53 >gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205] Length = 302 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ G +S + + + +NEL WR++++ L Sbjct: 71 TRLSPYIRHGAISLAEVRDAVFARTKQRQAS-----EKLINELGWRDYWQRLWEQLGDGI 125 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T L +G TG +D ++L GW+HN RM A+++V Sbjct: 126 WSDQEPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQTGWLHNHARMWLAAYVV 185 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 + W+ G ++F+ LLDGD ASNN WQW AS+ PYF FN Sbjct: 186 HWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASS-FSHKPYF--FN 230 >gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis domestica GB:D31902 [Melanoplus sanguinipes entomopoxvirus] gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis domestica GB:D31902 [Melanoplus sanguinipes entomopoxvirus] Length = 466 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 67/434 (15%), Positives = 121/434 (27%), Gaps = 24/434 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W D RI DN L A S + + PE RQ F+ + Q Sbjct: 36 LYWCVRDQRIQDNWGLIYAQELALKSKSSLHMCICLVPEFLNAT---IRQFDFMLNGVKQ 92 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +++ I F S++ L + + + L + L ++ Sbjct: 93 MEEECKNLNIHFHLL----IGISVDVLPKFIKKYNIGVLIVDFYPIKIFNNWVNQLISKI 148 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V + V S K + Sbjct: 149 NIDVYQVDSHNIVPCWIASNKLEYSAKTIRNKINYKLSEYLTEFIPIIKHTYNTYIKINN 208 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 G + A IL F + ++ Y ++R+ P S LSP Sbjct: 209 NWKKAEQSLNIDRNVKPVSWAKSGTKYAFKILDIFIQNRLKDYAKKRNDPNANAISNLSP 268 Query: 248 YLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 ++ G +S ++ N+ K+ + + A +Y Sbjct: 269 WIHFGQISTQRIILEINKYKKLYPKSVEVFCEEAIIRKELCDNFCYYNENYDNINGANNW 328 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + K + L + T + +A+ +Q+ G MH LRM A +++ Sbjct: 329 AIKTLNEHKNDTRKHIYSLYQLENALTHDNLWNASQKQMIIYGKMHGYLRMYWAKKILEW 388 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTIQ 414 +DG + G W+ +D R + Sbjct: 389 TKSPEEALYISIYLNDKYFIDGRDPNGYVGCMWSICGIHDRAWKERPIFGKIRYMSYEGC 448 Query: 415 GKRFDPQGTFIRHW 428 ++FD FI+ + Sbjct: 449 RRKFDVD-LFIKKY 461 >gi|296419444|ref|XP_002839318.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635446|emb|CAZ83509.1| unnamed protein product [Tuber melanosporum] Length = 265 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 48/209 (22%) Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 L + L + +W++E+ ++F+++++ +P VC K S Sbjct: 99 RTLGANPIKRLGRRSKRIQTWISEIAQKDFHKNVLVNWPFVCTNKTSKLPHSPTPQYSTS 158 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + G+TG PIIDAA+RQL ++ NR R + Sbjct: 159 LAESYFYAGHTGDPIIDAAIRQLQKTKYIRNRARTVCV---------------------- 196 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440 TG D PYFR+FNP +F P IR W+ +L V Sbjct: 197 ----------------GTGVDPQPYFRLFNPVK-SLQFYPHSEHIRTWVGKLKEV----- 234 Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHH 469 HAP LD+ P+VDH+ + Sbjct: 235 HAPPKVLDEEGAK----KPLVDHEVSQEE 259 >gi|311747654|ref|ZP_07721439.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] gi|126575640|gb|EAZ79950.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1] Length = 365 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 9/155 (5%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 +QLSPY+S GV+S Q + +K L P S + EL WR++++ + Sbjct: 35 TQLSPYISRGVISTNQVFEYIK-----SLNFPWSQCEKLVQELAWRDYWQQVWLAKGEAI 89 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 F + + ++ + A Q TG +D + L G+MHN +RM AS Sbjct: 90 ----FEDLKNEQKPVQNHQIPSAIIQAKTGIEAVDQGILDLYQTGYMHNHMRMYVASICC 145 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 W ++ S LLDGDLASN+ WQW A Sbjct: 146 NIANSHWLNPAKWMYSHLLDGDLASNHLSWQWVAG 180 >gi|88808065|ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805] Length = 309 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 5/188 (2%) Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + Y R+ T LSP++ GVL+ + + + D G+ + Sbjct: 60 QRMEAKRYGRSRNHLKGAVTR-LSPWIRHGVLTLAEIREAVFAQLRDRGQGRDDGS-KLI 117 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 NEL WR+F++ + T + L ++G TG +D + Sbjct: 118 NELGWRDFWQRMWGDLGDGIHESQEELKTGHDPSSYSRELPDDVREGRTGLACMDGFSEE 177 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L + GW+HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AS+ Sbjct: 178 LVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSH 236 Query: 403 VPYFRIFN 410 PY +FN Sbjct: 237 KPY--VFN 242 >gi|294339500|emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 396 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 79/186 (42%), Gaps = 9/186 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSPYL+ G L R L L L EL WR Sbjct: 30 YARSRNHLQGHVTR-LSPYLTHGFLGLRDVVQHLSMRHGLGL------QDKLLQELGWRA 82 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + S + + + L +G TG P+ID A+R L G++ Sbjct: 83 FFQQVWRHEGSGILQSQHLGPL--PDRAYAPALPADLCEGRTGVPVIDQAVRTLYATGYL 140 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM AS+ V V WR G ++ ++ LLDGDLASN+ WQW A TG+ F Sbjct: 141 HNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSSKPYLFNAD 200 Query: 410 NPTIQG 415 N Sbjct: 201 NVAKYA 206 >gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens AM1] gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium extorquens AM1] Length = 467 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 124/422 (29%), Gaps = 26/422 (6%) Query: 23 NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 N AL A ++ + + + +AR F+ L +L ++GI Sbjct: 36 NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANARHYSFLLQGLADAAAALEKRGIA 94 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + + +I+ L ++ E+ R+ + + Sbjct: 95 FLLRRATPAEIAIDLSADAALLVLDRGYLAIQKRWYGEIEREAQCRIVQVEGDVVVPLET 154 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + + ++ K++ + + + V L G Sbjct: 155 ASTKHEYAARTLRPKLRKLWDDYLEPVEPRQVDHPAEGLIKRLKLKDGLDASDPEKLLAK 214 Query: 199 ---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F G A L++F + Y R+ P S +SPYL G +S Sbjct: 215 LALNTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311 P + + ++ RE + + +P Sbjct: 275 PVEI---ALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKT 331 Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + + +G T + AMR++ G+MHN+LRM +++ Sbjct: 332 LAEHADDPRPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420 LDG A++ W + +IF Q + +FD Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRQIFGSVRYQSENSLRKFDA 451 Query: 421 QG 422 +G Sbjct: 452 KG 453 >gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter versatilis Ellin345] Length = 446 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 65/407 (15%), Positives = 125/407 (30%), Gaps = 21/407 (5%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W++ R DN AL A ++A + I + R F+ + + + Sbjct: 2 YWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAEM 61 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 ++ I F + L +C + + + + ++ K+L+ + Sbjct: 62 AEERDIGFVLRRF-----PEHSLIKFCDEVKAALVIGDENPMRELREWREIAAKKLRVPL 116 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 D V +A ++ + + + + A R + Sbjct: 117 WTVDADVIVPSKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGLQQLDWR 176 Query: 192 NIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + F G + AL +L +F K + Y E+ + GT++LSP Sbjct: 177 GTEDITEGWEIDRSVKPVDSFHGGTREALRLLDEFVKHGLTRYPERHNQADENGTARLSP 236 Query: 248 YLSIGVLSPRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 YL G + P +++ E D + ++ + + Sbjct: 237 YLHFGHIGPHTVALAVEKSKVPREAKDDFLDQVITWRELAINMVHFNPLYDTLECGENWA 296 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + L+A T + +AA Q+ GWMHN +RM A ++ Sbjct: 297 HKTLGEHAKDPRPIQYTPKQLEA---AETYDDLWNAAQLQMVHAGWMHNYMRMYWAKKIL 353 Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF 406 + LDG + G W A G P+F Sbjct: 354 EWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAW-AIVGKFDRPWF 399 >gi|87123060|ref|ZP_01078911.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] gi|86168780|gb|EAQ70036.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917] Length = 313 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 5/181 (2%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSP++ GVLS + + + + +NEL WR+ Sbjct: 87 YGRSRNHLDGAVTR-LSPWIRHGVLSLAEV-RDAVFLQLQKRGQSRDDGAKLINELGWRD 144 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + T + L + + G TG IDA +L GW+ Sbjct: 145 FWQRMWQALGDRIHDSQEELKTGHDPASYRVELPEDIRDGRTGLACIDAFRAELVHSGWL 204 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A+++V V W+ G ++F+ LLDGD ASN+ WQW AS+ PYF F Sbjct: 205 HNHARMWLAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSHKPYF--F 261 Query: 410 N 410 N Sbjct: 262 N 262 >gi|307297559|ref|ZP_07577365.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2] gi|306916819|gb|EFN47201.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2] Length = 449 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 65/435 (14%), Positives = 130/435 (29%), Gaps = 33/435 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R +N AL A D + +F+ + R F++ L Sbjct: 21 LYWMQASQRTEENHALELAKQEAKELDVPLAVLFVLN---ANYPSGNLRSFSFMFDGLRD 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ L ++GI F + D + L ++ + Sbjct: 78 VKSELEEQGIRFVIFKGDPVDIVPKVSKRCALVVTDVGYLRHQIDWRKRIAEKLECPFLS 137 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + S ++ K + F N +A G Sbjct: 138 VESNVVVPVRTASCKEEYSAATFRKKVMKHFAEFV-----NDFEAVELRSRASLAEFEGA 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 ++ ++ F G++ A L F + + + E+R+ P S++SP Sbjct: 193 TGIEDVDLSDLDQSVSVVSDFHGGQKEAKRRLEVFLSKNLDRFEEERNDPNSGCLSEMSP 252 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G +SP R+ + ++ RE + + + + Sbjct: 253 FLHFGHISPSYIARRVIDSCSKGKNAYIEEL------VVRRELGVNFVFYNSKYDSFEAL 306 Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W +K + G T P +AA ++++ G MH +RM L Sbjct: 307 PQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWNAAQKEMSLTGKMHGYMRMYWGKKL 366 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS------TGNDSVPYFRIFNPT 412 ++ LDG + G W + + R N Sbjct: 367 LEWSSDPESAICSAIYLNDKYELDGRDPNGYAGILWCFGKHDRAWSEREIYGKVRYMNSN 426 Query: 413 IQGKRFDPQGTFIRH 427 ++FD ++++ Sbjct: 427 GLKRKFDID-SYVKR 440 >gi|311029788|ref|ZP_07707878.1| deoxyribodipyrimidine photolyase [Bacillus sp. m3-13] Length = 221 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%) Query: 7 MSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 M++ ++W R D R+ DN ALY A + + ++ V+ P + F +A Sbjct: 1 MTLSIMWFRRDFRLQDNAALYHAVKETQHRNEPLLLVYHLDPGFTTNDTPN---HRFFFA 57 Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L + K ++GI + + + + L+ + VT L+YN+ +RDK + Sbjct: 58 ALDRFIKRCEKQGIYIHLVEGTWQEAFNQILEHF---PEVTSLYYNQDEVGAGQKRDKEV 114 Query: 124 EKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADL 174 +K R I S + + +YKV+TP+ K + + Sbjct: 115 DKFFIKRGIRVSSYIDYTIHGANEVKKPDNSIYKVFTPYFKKWMAQPKRDPY 166 >gi|149280167|ref|ZP_01886291.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39] gi|149229181|gb|EDM34576.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39] Length = 65 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 MK + + WLR DLR+ D+ ALY A V+ +FI + + + F Sbjct: 1 MKKE----ISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTF 55 Query: 61 IYASLLQVQK 70 IY ++ ++ Sbjct: 56 IYNTIKELNA 65 >gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818] Length = 512 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 67/404 (16%), Positives = 126/404 (31%), Gaps = 28/404 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A ++ ++ VF P+ R F+ L Q Sbjct: 32 VYWMSRDQRAKDNWALLYARSLARSARVPLVVVFSLVPKFLDAT---IRHYGFMLRGLHQ 88 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 K L +K + F Q + + ++ Q + + +R K + + L Sbjct: 89 TAKHLHEKLVPFHLLQ----GSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQAL 144 Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + D ++P + P + +Q L Sbjct: 145 EAQNVPLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGD 204 Query: 187 PVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P + +D G + + F +++ + E R+ P Sbjct: 205 MELPPVFDLEAQFDMLEVDTSVKEVDWIEPGYEQGMAAAEAFGRDRAKKFDELRNNPNED 264 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY G +S LK ++ K ++ RE + + Sbjct: 265 VCSNLSPYFHFGQISAAAVVLLLKSKYSKKAAKGV--QTFIEEAVVRRELSDNFCFYNRR 322 Query: 301 V------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 + T + + + + + +QG T + +AA Q+ G MH LR Sbjct: 323 YDSIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHDDLWNAAQLQMVERGKMHGFLR 382 Query: 355 MITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 M A +++ + LDG + G W+ Sbjct: 383 MYWAKKILEWTATPEDALQTALFLNDRYELDGRDPNGYVGCMWS 426 >gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation) [Methanothermobacter thermautotrophicus str. Delta H] gi|2507184|sp|P12769|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus] gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation) [Methanothermobacter thermautotrophicus str. Delta H] Length = 445 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 70/402 (17%), Positives = 131/402 (32%), Gaps = 30/402 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 S + W++ +R N AL A +++ +I VF T + ++R F+ Sbjct: 20 SYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDDF---PNANSRHYRFLIEG 76 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L V+ +L ++GI + D L Y E + Sbjct: 77 LRDVRSNLRERGIQLVVER----DSPPSVLLKYADDAAAAVTDRGYLDIQKEWVDEAAGA 132 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + V A ++ L + +V +R+L + ++ L Sbjct: 133 LHIPLTQVESNVIVPVETASDKEEYSAGTF---KPKIKRHLKRFMVPLRMRTLKMDSLDL 189 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + R F P +F G AL I +F +EK+ + R+ P S Sbjct: 190 EPGPEFEDAVRDFRAPEDLEPSVFRGGTSTALSIFSEFLREKLECFERYRNDPVKNCLSN 249 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +SPYL G +SP R E ++ RE + + + S Sbjct: 250 MSPYLHFGQISPLYLALRASEAGE--------CPEFLEELIVRRELSMNFVHYSDSYSSI 301 Query: 305 KPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W ++ + + + + T P +AA +++ G MH +RM Sbjct: 302 SCLPEWAQRTLMDHVADPREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRMYWG 361 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ R + +DG + G W Sbjct: 362 KKILEWTDHPARAYDIALYLNDRYEIDGRDPNGFAGVAWCFG 403 >gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 68/437 (15%), Positives = 134/437 (30%), Gaps = 32/437 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R N AL A ++ ++ +F+ + + G R F+ + Q Sbjct: 23 LYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRDYL---GAGRRHYRFLLEGIEQ 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKR 126 ++ L+ +GI F D + + V + + + + Sbjct: 80 LEVDLADRGIGFLL----KIGDPPGIVAEFAADAALVVFDTGYTRLQRSWRKAAAAGSFC 135 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + V G A + + TP +Q L + + Sbjct: 136 APVMEVESDLVVPVRTASGKEEYSAATIRRKITPLLFRFMQPLKRQSAKIDSTALAGRAD 195 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV---YYYVEQRDIPAIQGTS 243 + + ++P+ I + R + E+R+ P+ +G S Sbjct: 196 GLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRLDAFITSGTLERFHEERNDPSKEGLS 255 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPYL G +S + L+ + + F + + + Sbjct: 256 CMSPYLHYGQISALEIA--LRASEHPGPGCEAFLEELIIRRELAFNFVFYNRFYDSFEAL 313 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + E E +K L + + T P +AA R+L G MH +RM + Sbjct: 314 PRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELTHKGKMHGYMRMYWGKKI 373 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFN 410 ++ E LDG + G W G P+ R N Sbjct: 374 LEWSASPREAFERALRLNDRYSLDGRDPNGYTGVAW--CFGKHDRPWASRPVFGKIRYMN 431 Query: 411 PTIQGKRFDPQGTFIRH 427 ++FD ++++ Sbjct: 432 DRGLERKFD-IASYVKQ 447 >gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus] Length = 506 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 26/388 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN A+ A ++ F+ Q + + R + F+ L + Sbjct: 32 VYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVTEPKTTLRYAGFMLKGLEE 91 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L +K I F Q + + + + ++ + + + + RR + + + L Sbjct: 92 TEGDLRKKKIPFHLLQAA---EPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVAEEL 148 Query: 128 QHR---VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 D ++P + + M + P A L S +L Sbjct: 149 NKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHARPDFLGAIPELSPNPQGTKL 208 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 D + + G + A L+ F + ++ + + + P S Sbjct: 209 PAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNEDVCS 268 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPY ++G +S P ++ RE + + + Sbjct: 269 HMSPYFNLGQMSA----QAAVMRVKASRRHPDGVKAFVEQGVVRRELSDNFCFYNDNYDN 324 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK-------QGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 W + + + W + T + +AA QL G MHN LRM Sbjct: 325 LSGAAGWARESLEAHANDQRE-WTYSVQELEEAKTHEDLWNAAQLQLVRDGKMHNFLRMY 383 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGD 384 A K +L + L D Sbjct: 384 WA----KKILEWSPSPHDALERCLFFND 407 >gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553] gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553] Length = 228 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 5/181 (2%) Query: 11 LVWLRN-DLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 + W+R DLRI+DN+AL A + + ++ +F+ +P+ + H AR+ F +L Sbjct: 38 VYWMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQDYIAHDRGARRIDFTLRNLF 97 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 V+ SL++ I ++ + S+ + N +YE++E+RRD + Sbjct: 98 CVKDSLAKLPIPLHTFTEQTGENYRRPVISFLQDYSCNSFYANIEYEVDELRRDLKVCAL 157 Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + + ++ PG + A + Y VY+PF + I L + L Sbjct: 158 AKSKGMKAMFVHNKCIIEPGVVTTKANKAYAVYSPFERTWISKLNENQDSYLQEYLAPEP 217 Query: 186 G 186 Sbjct: 218 N 218 >gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein [Desulfobacterium autotrophicum HRM2] Length = 453 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 124/396 (31%), Gaps = 21/396 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R +N AL A + ++ + V+ VF T + + R F+ L + Sbjct: 22 LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTND---SPDANLRHYTFMLEGLNE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +KSL ++GI + + ++ + + Q + +K + Sbjct: 79 TRKSLEKRGIRMIFRIGHPVKEVLDIGRK-ASMIVCDRGYLRHQRAWRKAIAEKSGCPVV 137 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 Q + V I+++ + Sbjct: 138 QVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIALKSTELER 197 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + D Q + +F G A F + Y R+ P S +SP Sbjct: 198 IKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNEPKYLAVSCMSP 257 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP ++K + + ++ RE + + F P Sbjct: 258 YLHFGQISPLYLALKIKACKNEAQEAAAAYLEEL---IVRRELAANFVYFNPYYDSLGCL 314 Query: 308 IPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W + + + T +AAM+++ G+MHN +RM + Sbjct: 315 PAWPTKTLAEHEKDVRDPVYTKSQLIACRTHDEYWNAAMKEMIVTGFMHNYMRMYWGKKI 374 Query: 362 VKDLLVDWRIGEEYF---MSQLLDG-DLASNNG-GW 392 ++ R E + LDG D S G GW Sbjct: 375 LEWSPTPLRAYETMIDLNNAYFLDGRDPNSYAGVGW 410 >gi|22298095|ref|NP_681342.1| putative deoxyribodipyrimidine [Thermosynechococcus elongatus BP-1] gi|22294273|dbj|BAC08104.1| tll0552 [Thermosynechococcus elongatus BP-1] Length = 276 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 5/144 (3%) Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 +L WR++++ L A + T + + L A TG +DA L Sbjct: 113 QLAWRDYWQRLYAHWGDRLWQDIEPYKTGWSAVDYATDLPAALVAAETGLACMDAFSSDL 172 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 G++HN R+ A+++V V W+ G +F+ LLDGD ASNN WQW AST Sbjct: 173 QRTGYLHNHARLWLAAYVVHWCRVRWQAGAAWFLQHLLDGDPASNNLSWQWVAST-FSHK 231 Query: 404 PYFRIFNPTIQGKRFDPQGTFIRH 427 PYF FN Q G + R Sbjct: 232 PYF--FN--RQNLERYSDGKYCRQ 251 >gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides] Length = 264 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 4/165 (2%) Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + + LSP L G LS R L E + +S + +LIWRE++ Sbjct: 100 NPDLLGRPISLSPALRFGCLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYF 159 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + P+ + N + LQ W +G TGFP +DAAMRQL T GW+H+ Sbjct: 160 YTMSVNNPNYGQMSGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHH 219 Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 R A FL + L + W G +F+ LLD D + G W W Sbjct: 220 VARNTVAFFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWV 264 >gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans JCM 2831] gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans JCM 2831] Length = 462 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 138/422 (32%), Gaps = 23/422 (5%) Query: 23 NKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79 N AL A ++ V+A F +AR F+ L + L ++G+ F Sbjct: 36 NPALELAIEEANRLDLPVVACFGLLDGASGFPEANARHYAFLLQGLADAKAGLEKRGVGF 95 Query: 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 +CS + +I + L ++ E+ + + + Sbjct: 96 VMRKCSPAEIAIALAEDAALLVLDRGYLAIQKGWYREIAAAVKTRIVQVEGDVVVPVETA 155 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 + ++ +++ PF L V+ L + + D Sbjct: 156 SPKHEYAARTLRPKLNRLWDPFLAPLKPRRVKHSADRLTLKSAIDVSDPEAVLAGMTLDR 215 Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 + GE A L+ F K+ Y R++P S +SPYL G +SP + Sbjct: 216 EVGPVRRFT-GGETQARKRLKAFLKDGFSGYGAGRNMPEAAAASHMSPYLHFGQISPVEI 274 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--EKIEWN 317 ++E V + ++ RE + + + +P + + + Sbjct: 275 ALAVREAKVGDSDDRGAYLEEL---IVRRELAMNHVYYTEGYDDYDRAVPDWARKTLAEH 331 Query: 318 KDSHLLQAWKQ-----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 A+ + G T +AAMR++ G+MHN+LRM +++ Sbjct: 332 ARDERPHAYSEAQLAAGETHDRYWNAAMREMRETGYMHNQLRMYWGKKILEWSPSPREGF 391 Query: 373 EEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QG----KRFDPQGTF 424 LDG ++ W + +IF Q K+FD + + Sbjct: 392 ARTLRLNNRYFLDGRDPNSFTNVAWVYGLHDRPWQKRKIFGTVRYQSENSLKKFDAKA-Y 450 Query: 425 IR 426 +R Sbjct: 451 VR 452 >gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM 17093] Length = 489 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 125/394 (31%), Gaps = 12/394 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + +A +AR F+ L V + Sbjct: 58 LYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLMDDYPEANARHYAFLLEGLQDVAE 117 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+++ I F + + ++ L +++ V R+ Sbjct: 118 ALAERRIAFVVQRGRPDEVALRLAQDAALLVCDRGYLRHQRLWRERVAREARCRVVQVES 177 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + + ++ + + + + + ++A R L V + LT P Sbjct: 178 DVVVPVEVASDKKEHAARTLRPKLTRHLETYLRDVEEVALRAPSRELGVEGLDLTDPGA- 236 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + A F G + +LR F +E+ Y R+ P S +S YL Sbjct: 237 -LLASLKLDTSVAPVRRFRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSHMSKYLH 295 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS----VCMGKP 306 G +SP ++ + EL + Sbjct: 296 FGQISPVFVALEVQRAGAGKNAEVYLEELIVRRELPMNFVFYEPHYDRYDALPAWARKTL 355 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + E L+A T P +AAM+++ G+MHN +RM +++ Sbjct: 356 DEHRGDAREHLYTREQLEA---AETHDPYWNAAMKEMLHTGYMHNYMRMYWGKKILEWSP 412 Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 E LDG A++ W Sbjct: 413 SPEEAFETALHLNNRYFLDGRDANSYANVAWVFG 446 >gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1] Length = 451 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 63/356 (17%), Positives = 115/356 (32%), Gaps = 17/356 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R +N AL A S + +I F P + R F+ L+Q Sbjct: 21 VYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSY---PEATLRHYDFMLKGLMQ 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ L I F + + + R + + + ++ + Sbjct: 78 VEQQLEALNIPFLVLS----GNPEREIPRFTASCRAGAVVTD--FSPLKISETWKNKVLE 131 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTG 186 + D ++P + N + P L++ L P + Sbjct: 132 HIPIPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTGFPELKGQSPERKSAV 191 Query: 187 PVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P N +A+ P G A L+KF ++ Y + R+ P S Sbjct: 192 PPVEWNKLYETLRINRAVAPVTWIDPGGDAATKTLKKFIDHRLASYPKLRNDPNAHAVSD 251 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +S + ++ K + + + + + + Sbjct: 252 LSPYLHFGQISAQHVAREIQASDAPRSAKDVFLEELVIRRELADNYCLYNKHYDSLKGIH 311 Query: 305 KPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 E+ + L A ++ T P+ +AA ++L G MH LRM A Sbjct: 312 PWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGKMHGYLRMYWA 367 >gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273] gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM 273] Length = 495 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 146/481 (30%), Gaps = 76/481 (15%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N+AL+ A A +I F +P RQ F+ L++ Sbjct: 21 IYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATF---RQYDFMLRGLME 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V++ L + I F + D E + + + + R L Sbjct: 78 VERRLRELEIGFVLLE----GDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAAAAL 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 I + V S + + P L+ + A VPA P Sbjct: 134 PVLFIEVDAHNIVPCLMASPK--QEYSARTFRPKVNRLLGEFLIALPPVERVPASEPWAP 191 Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + A P GE A+ L F +E++ +Y E+R+ P TS LS Sbjct: 192 TDWERVRARLPVERPAGTVRHPQPGEAAAIRHLETFIRERLAWYGERRNDPNADATSGLS 251 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--------------------------- 279 PYL G + ++ + G Sbjct: 252 PYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREASGVVNSTSPEGW 311 Query: 280 -----------------SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 ++ RE + A+ W + + L Sbjct: 312 EATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIWAQDSLARHAADL 371 Query: 323 LQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 +A +++ T P+ +AA ++L G +H +RM A +++ E Sbjct: 372 REAIYTPEEFEKAVTHDPLWNAAQQELLRTGSIHGYMRMYWAKKILEWSPSPREAFETAV 431 Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTIQGKRFDPQGTFI 425 LDG + G W+ G P+F R N ++FD + +I Sbjct: 432 WLNDRYALDGRDPNGYAGVAWSIG-GLHDRPWFERPVYGKIRYMNAAGCRRKFDVE-RYI 489 Query: 426 R 426 R Sbjct: 490 R 490 >gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 486 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 125/417 (29%), Gaps = 34/417 (8%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 S L W++ R N AL A ++ V AVF TP R F+ Sbjct: 27 SCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSY---PEAQRRHYRFLIEG 83 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L+ Q +Q G+ D + + R + + + Sbjct: 84 LVDTQADAAQLGVPLVVR----LGDPPAVVLKAVEESRPAVVVGDENPVRIGQCWRAKVA 139 Query: 125 KRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + L R F + S L + + + + L + Sbjct: 140 ESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRPKIHRMLHEWLKPLPVIKAKTPW 199 Query: 184 LTGPVTPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVE 232 T P+ + + P +P G + A L++F +++ Y + Sbjct: 200 PTDESGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQRFVAQRLARYGK 259 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 R+ P TS+LS +L G +SP + EE S ++ RE Sbjct: 260 DRNEPIPYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASVESYLEEMIVRRE 319 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQL 343 + +A P W + + T P+ +AA +++ Sbjct: 320 LAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAETHDPLWNAAQKEM 379 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAAS 397 G MHN LRM A +++ + +DG + G WA Sbjct: 380 TLTGRMHNYLRMYWAKKILEWSPDPETAFAVALDLNDRYEMDGRDPNGYTGVAWAIG 436 >gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina] Length = 529 Score = 80.6 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 64/454 (14%), Positives = 122/454 (26%), Gaps = 70/454 (15%) Query: 3 ATTAMSVHLVWLRNDLRITDNKALYAACHNS----------------------------- 33 + + W+ D+R++DN AL C + Sbjct: 45 NNSPTPPVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALA 104 Query: 34 DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 ++ F P+ G AR F+ L +++ L Q I F + + Sbjct: 105 QPPLVVAFNLVPQFL---GAGARSFCFMLKGLRELETKLRQFNIPFYLLR----GQPEDT 157 Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 + R + + + + + +LQ + + D+ + P + + Sbjct: 158 IPQLVDALRAGLVVSDYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVP--AKIASNK 215 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 R + + L + + + P + + G Sbjct: 216 REYAARTIRPKIEKLLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAA 275 Query: 214 NALHILRKF-----------------CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 Y+V++ D G S LSPYL G LS Sbjct: 276 VPEVDWITPGEAAARAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSA 335 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 ++ + ++ RE + P P + ++ Sbjct: 336 QRAALEASKLRSRHREAVDRYLEEL---IVRRELADNFCEHCPDYDKLVPGTAYDWALKS 392 Query: 317 NKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + G+TG + +A +L G MH +RM A +++ Sbjct: 393 LEKHKRDPRPITYTRQQLESGHTGDDLWNAGQMELVRQGKMHGYIRMYWAKKILEWSGTP 452 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQW-AAST 398 E LDG S G W A Sbjct: 453 EEAVENAIYLNDKWSLDGRDPSGYTGVMWSVAGV 486 >gi|148238603|ref|YP_001223990.1| FAD binding domain-containing protein [Synechococcus sp. WH 7803] gi|147847142|emb|CAK22693.1| FAD binding domain of DNA photolyase [Synechococcus sp. WH 7803] Length = 340 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 5/188 (2%) Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + Y R+ T LSP++ GVL+ + + + D G + Sbjct: 91 QRMDAKRYGRSRNHLKGAVTR-LSPWIRHGVLTLAEIREVVFAQLRDRGQGRDDGG-KLI 148 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 NEL WR+F++ + + T + L ++G TG +D Sbjct: 149 NELGWRDFWQRMWSDLGDSIHESQEELKTGHDPASYSRELPDDVREGRTGLACMDGFRDD 208 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L + GW+HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AS+ Sbjct: 209 LVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASS-FSH 267 Query: 403 VPYFRIFN 410 PYF FN Sbjct: 268 KPYF--FN 273 >gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis Och 149] Length = 404 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 18/218 (8%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S LSPYL +++ + N + + ++ E+ WR +++ + Sbjct: 43 NHTHVSGLSPYLRCRLITESEVVNAVLQRHSIAAA------EKFMQEVFWRTYWKGWLEL 96 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P+V + + L W +G TG DA +L G++HN R Sbjct: 97 RPAVWTQYQVALDQAWNDVQTQAGLRARWENACRGETGIDCFDAWAHELVETGYLHNHAR 156 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413 M AS + L + W +G ++F+ LLDGD ASN GW+W A Y R N + Sbjct: 157 MWFASIWIFTLELPWELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARSSNISK 216 Query: 414 QGK-RFDPQ----GTFIRHWL---PELNNVPTQYIHAP 443 + RF P+ G I PE ++P + P Sbjct: 217 FTENRFHPKWQLAGEAIPRSAPLPPEPRSLPPGTAYDP 254 >gi|296120560|ref|YP_003628338.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] Length = 843 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 113/416 (27%), Gaps = 27/416 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + LR +N AL A H + + + + R+ FI V Sbjct: 48 LYWMHHSLRGHENPALDVAIHLAHWLEKPLLVYQGLSEDHPYANDRRHTFILQGARDVHA 107 Query: 71 SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L+ + V + + ++ L ++ + + + Sbjct: 108 ELAEQKISSVLHVARAEDRGPHLKTLAAHAAVLVTDDVPTAPTIHWRNRLAASIKTPIVC 167 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRL 184 C V + +Y L L P ++ L Sbjct: 168 VNGACIVPPQLVKRAFDRAFAYREATAWLYKTRNTRPWPVLRYAGKPFPLDQRPFQSVDL 227 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + G Q F K+ + Y +QR+ G S+ Sbjct: 228 QQTSIADLLAISQIDHSVGPVQHTVGGSQAGYTRWENFKKQGLRRYADQRNDALKDGVSR 287 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +S YL G++SP E K LIWRE + Sbjct: 288 MSAYLHYGMVSPFTLVRDCFEVGGASAEK------YLDELLIWRELAWCFCHYRTDHEAL 341 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W + ++ A T P+ +AA L G +HN +RM Sbjct: 342 SALPTWARQALKAGEADTRPALYDEETLARAQTHDPLWNAAQMSLLRQGELHNNVRMTWG 401 Query: 359 S---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 + R+ + LDG ++ GG W + R F P Sbjct: 402 KAIPLWTRTTEEALRLLFDLNHRYALDGCDPASYGGLLWCLG------QFDRPFTP 451 >gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max] Length = 500 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 70/456 (15%), Positives = 134/456 (29%), Gaps = 40/456 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+TDN AL A ++ + V + G +R F+ L Q+ Sbjct: 32 VYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCH 91 Query: 71 SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + Q ++ E + + + + L + R + + KR+ Sbjct: 92 RMQHYSSNPLFLFQ----GEADETVPKFLRECGASLLVTDFSPLREVRRCKEEICKRVSD 147 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGPV 188 V D ++P + + + + LV + PA + Sbjct: 148 SVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEVEPPAGKWVATE 207 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNAL-----------HILRKFCKEKVYYYVEQRDIP 237 S P + K Y +++ + Sbjct: 208 NHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRLKGYSLDRNNPC 267 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S LSPYL G +S ++C E P++ ++ RE + + Sbjct: 268 HPNALSGLSPYLHFGQISAQRC---ALEARKRRNSHPQAIDAFLEELIVRRELADNYCFY 324 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHN 351 P K W + + + + T P+ +A+ ++ G MH Sbjct: 325 QPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNASQLEMVHYGKMHG 384 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--- 405 +RM A +++ E LDG + G W+ G + Sbjct: 385 FMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSI-CGVHDQGWKER 443 Query: 406 -----FRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434 R N ++FD ++ + EL Sbjct: 444 PIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKK 479 >gi|209965665|ref|YP_002298580.1| hypothetical protein RC1_2382 [Rhodospirillum centenum SW] gi|209959131|gb|ACI99767.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 484 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 72/229 (31%), Gaps = 13/229 (5%) Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 Q P G L + + R S L PY+ +++ + Sbjct: 62 MTQPFPPRRDAGLARLHAFLPRAGQRYAAERNHDRGPADRGNVSGLGPYVRHRLVTEAEV 121 Query: 260 WNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 + + + I+ + W L R + Sbjct: 122 IRHVLDVHSFGAAEKFIQEQFWRTYWKGWLELRPQVWRDWLAGVAEARR-------RLDR 174 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 G TG DA +L G++HN RM AS + L + W +G E+ Sbjct: 175 DPGLHDCYTDAVAGRTGIDGFDAWAAELRETGYLHNHARMWFASIWIFTLRLPWELGAEF 234 Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422 F+ LLDGD ASN W+W Y R N + RFDP G Sbjct: 235 FLRHLLDGDPASNTLSWRWVGGLQTVGKTYLARRDNIRTYTEGRFDPVG 283 >gi|254431208|ref|ZP_05044911.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] gi|197625661|gb|EDY38220.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001] Length = 440 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342 NEL WR++++ L T + L + TG IDA + Sbjct: 106 NELGWRDYWQRLWRLLGDGIWHDLEPLRTGHPAEAYAAELPPDITEARTGLACIDAFAAE 165 Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 L T GW+HN RM AS++V V W+ G +F+ LLDGD ASNN WQW AS+ S Sbjct: 166 LRTSGWLHNHARMWLASYVVHWRRVRWQAGARWFLQHLLDGDPASNNLSWQWVASS-FSS 224 Query: 403 VPYF 406 PY Sbjct: 225 KPYI 228 >gi|188586748|ref|YP_001918293.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 456 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 126/402 (31%), Gaps = 21/402 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + + + + S+R F+ L V + Sbjct: 24 LYWMQKAQRTHYNHALEYAIEQANKLNLPLIVYFGLYEQFPYASSRHFQFMLQGLQDVAE 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L+++ I + +IE + + K + + ++ + + Sbjct: 84 NLAKRNIKMIIKRTFPPYGAIELAKDASMIVVDKGYLKFEKDWKEILSHQLSCPIHQIET 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTG 186 + + ++ L+M ++ + N ++ + I + Sbjct: 144 DAVIPVNTASSKEEYAAYTLRKKLLKMLDIFLTPLISRNPNFNSFEITNLEQYNDIDIYT 203 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQN--ALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + GE + + Y+++++ P++Q TS+ Sbjct: 204 KSASEILEELDIHREVQPVTDIKGGENQALEQLSGFLNQGKGLELYIQKKNDPSVQATSK 263 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G +SP + + D ++ RE +L+ + Sbjct: 264 LSPYLHFGQISPLFIALEVLKFTQD------YNHEFLEQLIVRRELSLNLIEKNINYLTL 317 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 P W+ K + + T +AA ++L + G +HN +RM Sbjct: 318 SPLPQWSIKTLNEHRNDPRNNFYTLEEIEAANTHDKYFNAAQKELMSRGTIHNYIRMYWG 377 Query: 359 SFLVKDLLVDWRI---GEEYFMSQLLDGDLASNNGGWQWAAS 397 +++ LDG + W Sbjct: 378 KKIIEWSQTPEEAHNTLCHLNDKYALDGRDPNGYANILWCFG 419 >gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa] gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa] Length = 503 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 65/386 (16%), Positives = 125/386 (32%), Gaps = 26/386 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R+ DN AL A ++ + V +A + G ARQ F+ L Q+Q Sbjct: 36 VYWMFRDQRLQDNWALIHAVDQANRSNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQS 95 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + + I F ++ E + ++ + L + + KR+ Sbjct: 96 HIEETLQIPFFLF----LGEAEETIPAFLKDCGASLLVTDFSPLRQFRTCQDEICKRVSD 151 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLRSLPVP 180 V D ++P + L + L + + Sbjct: 152 SVTIHEVDAHNVVPIWVASEKLEYSARTLRGKINKLLPEYLIDFPMLQLPKNKWVAATKQ 211 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +I + + +P + + F +++ Y R+ P Sbjct: 212 SIDWNDLIDNVLRKGAEVPEIKWCEPGEDAAMEVLMGSKDGFLTQRLKNYSTDRNNPLKP 271 Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSPYL G +S ++C E + P+S ++ RE + + P Sbjct: 272 KGLSGLSPYLHFGQISAQRC---ALEARKVRNLSPQSADAFLEELIVRRELADNFCFYQP 328 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH--N 351 + W K + S + + T P+ +A+ ++ G MH Sbjct: 329 NYDSIHGAWEWARKTLADHASDKREHIYSKEQLEKAQTADPLWNASQLEMVCHGKMHGFM 388 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFM 377 R + + + + K +L R EE Sbjct: 389 RQKTLCSMYWAKKILEWTRGPEEALA 414 >gi|78211770|ref|YP_380549.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. CC9605] gi|78196229|gb|ABB33994.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605] Length = 303 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVL+ + + + E + K +NEL WR+ Sbjct: 60 YAKSRNHLRGAVTG-LSPYIRHGVLTLAEVRDSVFERIRNRDEGGK-----LINELGWRD 113 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + T L + G TG +D QL + GW+ Sbjct: 114 FWQRMWLDLGDGIHDDQEPFKTGHDAGAYAQELPADVRAGTTGLACMDGFRDQLVSTGWL 173 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AST PYF F Sbjct: 174 HNHARMWMAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVAST-FSHKPYF--F 230 Query: 410 N 410 N Sbjct: 231 N 231 >gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium zucineum HLK1] gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium zucineum HLK1] Length = 455 Score = 80.3 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 71/430 (16%), Positives = 127/430 (29%), Gaps = 20/430 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++A + + + +AR F+ L +V++ Sbjct: 23 LYWMQQSQRAGGNPALEYAVEQANALKLPLLV-CFGLAAFPEANARHYDFMLRGLAEVER 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ +GI F + + E L ++ + Sbjct: 82 ALAARGIGFVIRKRPPHELVRELAADAALVVADRGYLRIQRAWRERLAEGLARRLVQVEG 141 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + + ++++++ + L + V L V V Sbjct: 142 DVVVPVEAASNKHEYAARTIRPKLHRLWDDYLHPLAERPVNHPALGLRVAGDVDLSKVDA 201 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 D + E A L F + Y R P S LSPYL Sbjct: 202 VLAGLKIDRSVPPVRRFAAG-EGAARAALAAFLDRGLARYEADRSRPEAGAVSHLSPYLH 260 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS----VCMGKP 306 G +SP + ++E V + EL ++ Sbjct: 261 FGQISPVEIALAVREAGVVSGVATYLEELIVRRELAMNHAFQAPAYDRYEVLPEWARQTL 320 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 ++ +A T +AAM ++ G+MHNRLRM ++ Sbjct: 321 ADHASDPRPHLYTRDQFEA---AETHDSYWNAAMLEMRATGYMHNRLRMYWGKKILHWSA 377 Query: 367 VDWRIGEEYFM---SQLLDGDLASNNGGWQWAAST-----GNDSV-PYFRIFNPTIQGKR 417 E LDG ++ W G V R P K+ Sbjct: 378 SPEEAWETALALNNRWFLDGRDPNSFTNVGWLFGLHDRPWGPQPVFGTVRSMGPNTF-KK 436 Query: 418 FDPQGTFIRH 427 FD + ++R Sbjct: 437 FDAEA-YVRQ 445 >gi|113954353|ref|YP_729493.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311] gi|113881704|gb|ABI46662.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311] Length = 315 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 5/186 (2%) Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y R+ T LSPY+ G+L+ + + + + + +G +NE Sbjct: 61 MDAKRYGRSRNHLNGSVTR-LSPYIRHGILTLAEVRDAVFSQLKQTSQRRDNG-EKLINE 118 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+F++ + T + L ++G T +D +L Sbjct: 119 LGWRDFWQRMWLDLGDRIHDDQEDHKTGHAASEYEQGLPDDIREGRTNLACMDGFRNELV 178 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T GW+HN RM A++LV V WR+G ++F+ LLDGD ASN+ WQW AS P Sbjct: 179 TQGWLHNHARMWMAAYLVHWRRVHWRVGADWFLEHLLDGDPASNHLSWQWVASC-FSHKP 237 Query: 405 YFRIFN 410 YF FN Sbjct: 238 YF--FN 241 >gi|320102681|ref|YP_004178272.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] gi|319749963|gb|ADV61723.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644] Length = 456 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSPYL GVL+ + N + A ++NEL WR+ Sbjct: 64 YERTRNYLDGAVTR-LSPYLRHGVLTLAEVRNHALKLVK-----HPVEAAKFINELGWRD 117 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 +++ + T + L Q +G TG +D R+L G++ Sbjct: 118 YWQRVYERLGDGVWRDREPYKTGYSARRYAAELPQEIAEGQTGMACMDEFARELRDTGYL 177 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A+++V V W+ G +F+ LLDGD ASNN WQW AST PY +F Sbjct: 178 HNHARMWLAAYVVHWRQVRWQAGATWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--VF 234 Query: 410 N 410 N Sbjct: 235 N 235 >gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum] Length = 530 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 68/414 (16%), Positives = 118/414 (28%), Gaps = 43/414 (10%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 M V L W+ D R+ DN A A + + F P+ + R F+ Sbjct: 67 IKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAET---LRHYTFM 122 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDD-----------------------SIEWLDSYC 98 L +V+K + I F ++ D + + S Sbjct: 123 IEGLKEVEKECRELCIPFHITSATSIPDNKLIKTGIKRKLSESINDYYADKVAQSILSVI 182 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 ++ + + K L + L + D ++P +H + Sbjct: 183 QSANISCIITDFSPLREPSSWIKGLSEVLPENIPFCQVDAHNIVPVWHASDHLEYAARTI 242 Query: 159 TPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 P L+ ++ L + F G + Sbjct: 243 RPSLHQKANTLMTEFPPLIKHPCYHQYDLPPIDWDYWMSEFSGDISVKPVDWIIPGTNSG 302 Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 L L KF E++ Y + R+ P S LSP+ G ++P++ L E + Sbjct: 303 LTTLHKFIHERLSKYADCRNDPTKNCLSDLSPWFHYGQVAPQRA---LIEVKLWRHKYKD 359 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QG 329 S I RE + + P + W + Sbjct: 360 SVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQHAHDKRNPSYSEETMVSA 419 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 T + +AA RQL G +H LRM A +++ + L D Sbjct: 420 DTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILEWHEDGPSAALK-LAFYLNDH 472 >gi|156744165|ref|YP_001434294.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus castenholzii DSM 13941] gi|156235493|gb|ABU60276.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus castenholzii DSM 13941] Length = 270 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPY+ GVLS + + ++EL WR++++ L Sbjct: 67 THLSPYIRHGVLSLAEVRDAALSRVRRSADA-----AKLVSELGWRDYWQRLYERLGDNV 121 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T + + L +G TG IDA +L G++HN RM A+++V Sbjct: 122 WRDQESYKTGYCAGDYAAELPDDIIEGRTGLACIDAFSHELRATGYLHNHARMWLAAYVV 181 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 + W+ G +F+ LLDGD ASNN WQW AST PY IFN Sbjct: 182 HWRRIRWQAGARWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--IFN 226 >gi|149198711|ref|ZP_01875754.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] gi|149138147|gb|EDM26557.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] Length = 365 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPY+S GV+S R ++ L + +L ++ EL WR++++ FY Sbjct: 35 SCLSPYISRGVISTRTVYDSLIKRGYNLEKI-----EKFVQELAWRDYWQSQWKFYG--- 86 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K + + + +G + + A++QLN+ G++HN +RM A + Sbjct: 87 -IKINKDLRHTQQAFHNHGMPHCLVKGQCSIQMFNTAIKQLNSTGYLHNHMRMYLAMSIC 145 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 W ++ L+DGD ASN WQW A Sbjct: 146 NIGSYHWHKPAQWMYYNLIDGDWASNALSWQWVAGC 181 >gi|167846552|ref|ZP_02472060.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210] Length = 108 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 58 Query: 61 IYASLL 66 ++ SL Sbjct: 59 LHGSLR 64 >gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC 50983] gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC 50983] Length = 506 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 67/408 (16%), Positives = 116/408 (28%), Gaps = 27/408 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ ++R DN AL A S ++ V+ G RQ F L Sbjct: 28 IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +LSQ I F F + + + V F + V KRL Sbjct: 85 VAANLSQLNIPFAIEASPKFPAFLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144 Query: 128 ---------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + V C D + +I + + L ++ Sbjct: 145 DIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKRHPYTISDDVHF 204 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 +N + ++A L + + Y QR+ P Sbjct: 205 HTVTTSEIDALLTNEEIVGKLDEAVKPIDWLTPGEDAGLQLALGYVKHMPNYSTQRNNPT 264 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPY G +SP++ + + I + +I RE + + Sbjct: 265 NPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCMIRRELADNFCYYN 321 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNR 352 + + F W + + + T + +A RQ+ G +H Sbjct: 322 DNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLEKADTHDRLWNATQRQMVETGKIHGY 381 Query: 353 LRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +RM +++ E LDG + G W Sbjct: 382 MRMYWCKKILEWTRSPEEALEFSIYLNDKYELDGRDPNGYVGIAWCIG 429 >gi|9633763|ref|NP_051841.1| m127L [Myxoma virus] gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus] gi|170664593|gb|ACB28750.1| m127L [Myxoma virus] gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2] gi|301134653|gb|ADK63767.1| m127L [Myxoma virus] Length = 445 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 120/394 (30%), Gaps = 21/394 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ + RI DN LY A + + +++ H ++R F+ L V+ Sbjct: 21 VYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVC-LTSFHLTTSRHVTFLLEGLRDVED 79 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++ F + L ++ +F + + + + L+ Sbjct: 80 ECVKRSFGFVVR----YGRPEVVLPEEVKKRNARWVFVDFYPLRVPEKDISNVVESLKDV 135 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 D ++P + + + + L+ + P V Sbjct: 136 ATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPNIGKHPYPVQDVYVED 195 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 P + I G + L+ + + + P + S LSP+L Sbjct: 196 YTPVLDDVPPIRDIKAGTKEGLKTLRAFLKHTLRYYYAFK----NDPTARACSGLSPWLH 251 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G LS ++ + V I P S A ++ RE + + PW Sbjct: 252 YGHLSAQRVV---LDTVVYASIYPASVAAFLDEIVVRRELSDNFCYYNKRYDSITSTHPW 308 Query: 311 ------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + + + T P+ +AA Q+ G MH LRM A +++ Sbjct: 309 ALRTLDEHRRDTRPYLYDTYSLEHARTHDPLWNAAQLQMVREGKMHGYLRMYWAKKILEW 368 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 LDG + G WA Sbjct: 369 SETPESALSVCIYLNDKYELDGTDPNGYVGCLWA 402 >gi|33864760|ref|NP_896319.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] gi|33632283|emb|CAE06739.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102] Length = 299 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 80/181 (44%), Gaps = 9/181 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y + R+ T LSPY+ GVL+ + + E K +NEL WR+ Sbjct: 60 YAKSRNHLNGAVTG-LSPYIRHGVLTLAEVKQAVFERIRKRDDGGK-----LINELGWRD 113 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + T + L Q + G TG +D +L T GW+ Sbjct: 114 FWQRMWLDLGDGIHDDQEAFKTGHDASSYARELPQDVRDGRTGLACMDGFRDKLVTTGWL 173 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM A++LV V W G +F+ LLDGD ASN+ WQW AS+ PYF F Sbjct: 174 HNHARMWMAAWLVHWRRVHWTAGANWFLEHLLDGDPASNHLSWQWVASS-FSHKPYF--F 230 Query: 410 N 410 N Sbjct: 231 N 231 >gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens subsp. patens] gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens subsp. patens] Length = 495 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 59/396 (14%), Positives = 118/396 (29%), Gaps = 11/396 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ D R DN AL A H + K + V +A AR F+ L V++ Sbjct: 30 VYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESFLEARARHFGFMLRGLRVVEQ 89 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDS-----YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L I F + + + E+L + ++ + + E + Sbjct: 90 NLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSLRIGRQWRNGVCENVASSVAVA 149 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + + S L G+ ++ + + + I Sbjct: 150 EVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEYPVLENPGKPWEAGAPDTIDWD 209 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + + + F ++ YV + D G S L Sbjct: 210 ALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVNIRIRNYVNRNDPSKPTGLSGL 269 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VC 302 SPYL G +S ++C ++ + + E + H Y + Sbjct: 270 SPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIVRGGLAENFCHYQPNYDNLKGAW 329 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + + + G T + +AA ++ G MH +RM A ++ Sbjct: 330 GWAQESLRIHAKDKREVVYTESELEAGKTHDKLWNAAQLEMVYYGKMHGFMRMYWAKKIL 389 Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 + LDG + G W+ Sbjct: 390 EWTESPEEALRIAIYLNDKYELDGRDPNGYVGCMWS 425 >gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] Length = 506 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 119/410 (29%), Gaps = 31/410 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ ++R DN AL A S ++ V+ G RQ F L Sbjct: 28 IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +LSQ I F F + + + V F + V KRL Sbjct: 85 VAANLSQLNIPFAIETSPKFPALLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144 Query: 128 QHRVICKSFDDSVLLPPGSILN-----------HALQMYKVYTPFRKALIQNLVQADLRS 176 R + V S R + D+ Sbjct: 145 DIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKRHAYTISDDVHF 204 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 V + +T I D + ID + P ++A L + + Y QR+ Sbjct: 205 HTVTTSEIEALLTNDEIVGKLDKAVEPIDWLTPG--EDAGLQLALGYVKNLPNYSTQRNN 262 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P S LSPY G +SP++ + + I + +I RE + Sbjct: 263 PTNPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCMIRRELADNFCY 319 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMH 350 + + + F W + + T + +A RQ+ G +H Sbjct: 320 YNDNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLENADTHDRLWNATQRQMVETGKIH 379 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +RM +++ E LDG + G W Sbjct: 380 GYMRMYWCKKILEWTKSPEEALEFSIYLNDKYELDGRDPNGYVGIAWCIG 429 >gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus] gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus] Length = 445 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 119/397 (29%), Gaps = 27/397 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVF---IATPEQWRQHGISARQSHFIYASLLQ 67 + W+ + RI DN LY A + + ++ TP H ++R F+ L + Sbjct: 21 VYWMYREHRIRDNWGLYYAQQKALRYRVPLYVCVCLTP----FHLTTSRHMAFLLEGLRE 76 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ ++ F + + L + +F + + + L Sbjct: 77 VEDECVKRSFGFVLR----YGCPKDVLPEEVKKHNARWIFVDFYPLRYPEKDISDVVTAL 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++P + + + L+ + + P Sbjct: 133 RDVATIIQVDSHNIVPCWIASLKQEYSARTFRLKIQKLLTTYLTKFPSVIKHPYPVQDVY 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 V P + I G + L+ + + + P + S LSP Sbjct: 193 VEDFTPTLDDVSPIRGITAGNKGGMRKLRAFLKHKLRYYHEFK----NDPTVDACSGLSP 248 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +L G LS ++ E P+S A ++ RE + + Sbjct: 249 WLRYGHLSAQRVV---LETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYDSITST 305 Query: 308 IPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 PW + + + + + T P+ + A Q+ G MH LRM A + Sbjct: 306 HPWALRTLDDHRQDLRPYLYDTSSLEHARTHDPLWNTAQLQMINEGKMHGYLRMYWAKKI 365 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 ++ LDG + G WA Sbjct: 366 LEWSKTPESALSVCIYLNDKYELDGTDPNGYVGCLWA 402 >gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1] Length = 631 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 131/446 (29%), Gaps = 37/446 (8%) Query: 16 NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D+R+ DN AL A + + ++ + + P Q R F +V+ L Sbjct: 82 RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139 Query: 73 SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 I F+ E D+ V R ++ Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181 + L + L A + + R P Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L + P + +D P + + + + Y + R+ P Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGV 319 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+ G +S ++C + + K K G S+++E++ R F+ Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379 Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + + A + G T + +AA QL G MH L Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405 RM A +++ + LDG + G W+ G + Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498 Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD + F+R + Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523 >gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG] Length = 631 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 131/446 (29%), Gaps = 37/446 (8%) Query: 16 NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D+R+ DN AL A + + ++ + + P Q R F +V+ L Sbjct: 82 RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139 Query: 73 SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 I F+ E D+ V R ++ Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181 + L + L A + + R P Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L + P + +D P + + + + Y + R+ P Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGV 319 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+ G +S ++C + + K K G S+++E++ R F+ Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379 Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + + A + G T + +AA QL G MH L Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405 RM A +++ + LDG + G W+ G + Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498 Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD + F+R + Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523 >gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB] Length = 460 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 128/421 (30%), Gaps = 28/421 (6%) Query: 23 NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 N AL A ++A V + + R F+ L +++L ++GI Sbjct: 34 NHALEYAIRKANALCQPVVVFFGIVDDFPEANERHYFFMLEGLCDAKRTLEKRGIQLVIQ 93 Query: 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142 CS + L ++ N + +++ Sbjct: 94 HCSPELGVVMMSRDASLVVVDRGYLRIQKAWRNVAAASMDCPLIQVESDVVVPIEETSSK 153 Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202 S ++++ + +L + AD SL + I R Sbjct: 154 EEYSAATIRKKIHQKLNQYLISLEETKPMADSLSLDFES--FPIDDVERAILRLDIDRSV 211 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 F G + L F +K+ +Y E R+ P + S +SPYL G +SP Sbjct: 212 KCVSFFRGGFEEGRKHLDVFIDQKLEHYAEHRNDPTLDCLSLMSPYLHFGQISPLYI--- 268 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEW 316 L S ++ RE + + + + W T + + Sbjct: 269 ---ALRILNSGRTSSEAYLEELIVRRELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQ 325 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + + + G T P +AA +++ G MH +RM +++ Sbjct: 326 RPYHYSRKELEDGKTHDPYWNAAQKEMVLKGKMHGYMRMYWGKKIIEWCETPEEAFHTAI 385 Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQGTFI 425 LDG + G W G P+ R N ++FD G ++ Sbjct: 386 YLNNKYELDGREPNGFMGVAW--CFGKHDRPWRERNIFGNVRYMNDRGLKRKFDADG-YV 442 Query: 426 R 426 + Sbjct: 443 K 443 >gi|168038306|ref|XP_001771642.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677081|gb|EDQ63556.1| predicted protein [Physcomitrella patens subsp. patens] Length = 665 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL---- 65 ++W ++DLR+ D+ + AA + +V+ V+I P + SL Sbjct: 1 AILWFKHDLRLDDHPGVAAAS--AYKRVLPVYIFDPYVCAGWSKE------LLESLCDAV 52 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 ++K L G L + T + + E R + + Sbjct: 53 SDLRKELRLLGSDLIVLTART----EHVLSRLAQKIGATSIITEEEVESTWQRTVHSVLE 108 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 L+ + + L S + +A + Sbjct: 109 SLEKEEPSSISETKLELDQWSAPLYDTPESASIPDNYQAFQR 150 >gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12] Length = 405 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 9/211 (4%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 P A P G L K + SQLSPYL +++ Sbjct: 1 MTPDTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPEQGHPHVSQLSPYLRHRLVTEG 60 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 + + + L A ++ E+ WR +++ + PSV M + Sbjct: 61 EVLDAV------LGRFSLKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLH 114 Query: 318 KDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 +S W +G TG DA R+L + G+MHN RM AS + L + W +G + Sbjct: 115 VESGFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGAD 174 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +F+ LLDGD ASN W+W A Y Sbjct: 175 FFLRHLLDGDAASNTLSWRWVAGLQTQGKNY 205 >gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49] gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49] Length = 631 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 128/446 (28%), Gaps = 37/446 (8%) Query: 16 NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 D+R+ DN AL A + + ++ + + P Q R F +V+ L Sbjct: 82 RDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQPT--RRHLSFFMGGAREVETEL 139 Query: 73 SQKGIVFQY----------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 I F+ E D+ V R ++ Sbjct: 140 KSLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQPALAVCDFNPLRLPTQVVEALTRV 199 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181 + L + L A + + R P Sbjct: 200 YAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFPKVQRMTVPWTH 259 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +L + P + +D P + + + + Y + R+ P Sbjct: 260 TKLFPLDEDRILSELKPDPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPLAGV 319 Query: 242 TSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+ G +S R K + K G S+++E++ R F+ Sbjct: 320 QSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNP 379 Query: 301 VCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P + + + A + G T + +AA QL G MH L Sbjct: 380 HYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYL 439 Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY----- 405 RM A +++ + LDG + G W+ G + Sbjct: 440 RMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSI-CGVHDQGFKERPV 498 Query: 406 ---FRIFNPTIQGKRFDPQGTFIRHW 428 R N ++FD + F+R + Sbjct: 499 FGKIRYMNYPGCERKFDVKA-FVRKF 523 >gi|219848494|ref|YP_002462927.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485] gi|219542753|gb|ACL24491.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485] Length = 271 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 Y R+ A + SQLSPYL GVL+ + + + F ++NEL WR Sbjct: 52 NYARTRNDVARRTVSQLSPYLRHGVLTLAEVRDSILNRFG-----HTPDTEKFVNELAWR 106 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 F++ + A + + L TG ID ++++L T G+ Sbjct: 107 AFWQIVYAHLGERIHHD--LEPAKHRSRVARRSLPPEVLTATTGLVCIDESLQELYTTGY 164 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 MHN RM A++L L VDWR G + F LLDGD ASN+ WQW + PY I Sbjct: 165 MHNHARMWVAAYLQHWLGVDWREGADLFYRHLLDGDPASNSLSWQWV-GSTFSHKPY--I 221 Query: 409 FN 410 FN Sbjct: 222 FN 223 >gi|260436077|ref|ZP_05790047.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. WH 8109] gi|260413951|gb|EEX07247.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. WH 8109] Length = 303 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 9/182 (4%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +Y + R+ T LSPY+ GVL+ + + + + K +NEL WR Sbjct: 59 HYAKSRNHLKGAVTG-LSPYIRHGVLTLAEVRDSVFARIRNRDEGGK-----LINELGWR 112 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 +F++ + T L + G TG +D QL T GW Sbjct: 113 DFWQRMWLDLGDAINNDQEPFKTGHDAGAYARELPADVRAGSTGLACMDGFRDQLVTTGW 172 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AST PYF Sbjct: 173 LHNHARMWMAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVAST-FSHKPYF-- 229 Query: 409 FN 410 FN Sbjct: 230 FN 231 >gi|317406428|gb|EFV86641.1| hypothetical protein HMPREF0005_05613 [Achromobacter xylosoxidans C54] Length = 151 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66 M L+WLR DLR+ DN A ++ A+FIA P QWR HG + + F +L Sbjct: 1 MHT-LIWLRTDLRLHDNP--ALAAAAAEGTATALFIAAPGQWRLHGDAPAKVDFWLRNLR 57 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + + L++ GI + +D + L +C + +T + N ++ +NE RRD + R Sbjct: 58 TLSRDLARLGIPLKLLTVDTWDQVPDALPRFCREHGITAVHANTEWAVNERRRDDAVACR 117 Query: 127 LQHRVICKSFDD 138 L I + Sbjct: 118 LAEAGIDWTLHH 129 >gi|148654199|ref|YP_001274404.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp. RS-1] gi|148566309|gb|ABQ88454.1| Deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp. RS-1] Length = 270 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + LSPY+ GVLS + + + A ++EL WR++++ L Sbjct: 67 THLSPYIRYGVLSLAEVRDAALSRVRR-----PADAAKLVSELGWRDYWQRLYERLGDDV 121 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T + L +G TG +DA R L + G++HN RM AS++V Sbjct: 122 WRDQEPYKTGYRADEYAAELPDDIIEGRTGLACMDAFSRDLRSTGYLHNHARMWLASYVV 181 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 V W+ G +F+ LLDGD ASNN WQW AST PY IFN Sbjct: 182 HWRRVAWQAGARWFLEHLLDGDPASNNLSWQWVAST-FSHKPY--IFN 226 >gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris vibrioformis DSM 265] gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium phaeovibrioides DSM 265] Length = 452 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 78/410 (19%), Positives = 133/410 (32%), Gaps = 24/410 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N+AL + + VF RQ HF+ L + Sbjct: 21 IYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATY---RQYHFMLEGLRE 77 Query: 68 VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ L + I F QCS + L+ Y + + + + Sbjct: 78 IELLLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQQAAAS 137 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +V D ++P + + + P L+ +Q +P Sbjct: 138 L--KVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVEAMPHRAELQ 195 Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V + + GE+ A LR+F EK+ Y E R+ P +GTS L Sbjct: 196 KVNWREVFANLSVDRTVEPIDWLKPGERAASEHLRRFISEKLPRYSELRNDPTAEGTSLL 255 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G LS Q ++ +S A ++ RE + A + Sbjct: 256 SAYLHFGQLSAAQVALEVQ----SSGAPEESKAAFLEELIVRRELSDNYCAHQEQYDAYE 311 Query: 306 PFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + Q ++ T + +AA ++L G +H +RM A Sbjct: 312 GLPGWARQSLEQHSLDPRETLYSPQEFETAATHDRLWNAAQKELLHTGRIHGYMRMYWAK 371 Query: 360 FLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF 406 +++ E LDG + G W+ G P+F Sbjct: 372 KILEWSPSPREAFETALWLNDRYALDGRDPNGYSGVAWSIG-GLHDRPWF 420 >gi|159469510|ref|XP_001692906.1| CPD photolyase class II [Chlamydomonas reinhardtii] gi|158277708|gb|EDP03475.1| CPD photolyase class II [Chlamydomonas reinhardtii] Length = 946 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 12/120 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASL 65 + W+ D R+ DN AL A + +V F P G ARQ F+ L Sbjct: 69 VYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGARQFGFMLRGL 125 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q+ L +GI F + D + L L + + ++R Sbjct: 126 RQLAPRLEARGIKFYLLK----GDPVHTLPQLVSGLGAGLLGWAERAVFGKIRYMNYNGC 181 >gi|222525279|ref|YP_002569750.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp. Y-400-fl] gi|222449158|gb|ACM53424.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp. Y-400-fl] Length = 271 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 89/204 (43%), Gaps = 10/204 (4%) Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 LR+ V++Y R+ +G S LSPYL G+LS + + + Sbjct: 30 QPSPIRGGRRAALRRLRAFNVHHYARTRNDVVQRGVSMLSPYLRHGMLSLAEVRDSIL-- 87 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 ++NEL WR F++ + A I + L Sbjct: 88 ---GRFGITPDTEKFVNELAWRAFWQLVYAHLGDRIHHD--IEPAKHKARVPRRRLPPDV 142 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 TG ID ++R+L T+G+MHN RM A++L+ L VDWR G + F LLDGD A Sbjct: 143 TAATTGLVCIDESLRELYTVGYMHNHARMWVAAYLIHWLGVDWREGADLFYRHLLDGDPA 202 Query: 387 SNNGGWQWAASTGNDSVPYFRIFN 410 SN+ WQW ST PY IFN Sbjct: 203 SNSLSWQWVNST-FSHKPY--IFN 223 >gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax SaI-1] gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax] Length = 973 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 68/414 (16%), Positives = 140/414 (33%), Gaps = 20/414 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+ L D R DN AL A + K + + IA R+ +++R + L +++ Sbjct: 494 LLLLTRDFRANDNWALTYAYELAKKKGLNL-IACTYLNRKEKLTSRFINAKLKVLKNLEQ 552 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L Q I F D+ E++ ++ ++ L + KR Sbjct: 553 ALKQMNIPFYILPLFMIDEFKEFIKTHHIKVIACDLHVLNDERAFIKSLCHICNKRKVKV 612 Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + G + K+ L + ++ + I+ P Sbjct: 613 FQVDSHNVIPIWVTSKGEECSVRTIKPKIQALLPTFLTEYVLLSPFEQ----KIKFPEPF 668 Query: 189 TPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + E+ A +L FC++ + Y +R+ P + L P Sbjct: 669 DMEEVASKLTVTNTCAVVSGAVFTEKKAQELLSHFCRQVLDKYNVKRNDPNSDAATVLLP 728 Query: 248 YLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGK 305 Y+++GV+S ++C + + + + I SG S+ ++ I R E + + + C + Sbjct: 729 YVNMGVISAQRCILEVHKHAYSNPSINAVSGKESFTDDFIMRKELADNYCYYNRNYCTFE 788 Query: 306 PFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + + + + ++ T + + QL G MH L++ A Sbjct: 789 GGRDWAKESLKKHDADKREYLYDYEDFRTAKTHSDLWNCCQLQLIDEGVMHEFLKVYWAK 848 Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIF 409 + V + + +DG S W + IF Sbjct: 849 KILNWSANSQVALKYAMQLNEEFSIDGKTPSGYVSIMWSIMGVHDQGWNERNIF 902 >gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54] gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54] Length = 458 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 126/395 (31%), Gaps = 15/395 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + ++ ++ VF P+ Q F+ L + Sbjct: 28 VYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGAKSS---QYLFMLRGLAR 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +QK L + I F + S + L + Q L + + + + L ++ Sbjct: 85 MQKKLHEMNIHFTLFEQS----PDDILPGFLRQIDAHLLVSDFDPLRIKRQWTEQLIAQV 140 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + S R L+ P Sbjct: 141 VTPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPLQHHPFSWAHTLAL 200 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 S++ R + + GE +A F K + Y E+R+ P + G S LSP Sbjct: 201 AGSSSLARVISTLNSSGCELRGAGEASAQFAADSFIKIGLENYSERRNNPCLNGQSGLSP 260 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G LS ++ + + + + K + + F + + Sbjct: 261 YLHFGHLSAQRLAWVVSRDKLPIETKEPFLEELIVRRELSDNFCLYEPLYDTFAGFPAWA 320 Query: 308 IPWTEKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 ++ ++ + + G T + +A L G +H LRM A +++ Sbjct: 321 RKSLDQHRCDERAYLYSFHDLEAGNTHEQLWNACQIDLVQSGKLHGYLRMYWAKKILEWT 380 Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 E LDG + G W+ Sbjct: 381 PNPETALEYAIRLNDRYSLDGRDPNGYAGVAWSIG 415 >gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 461 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 15/203 (7%) Query: 229 YYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +Y R+ S LSP+L +++ + + + A ++ E Sbjct: 85 HYASTRNYDFGTERRSNVSGLSPWLRHRLITETEVLAAVLA------SHNFNAAEKFVQE 138 Query: 285 LIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 + WR +++ + PSV + + G TG D +R Sbjct: 139 VFWRTYFKGWLEQRPSVWTLYQRDLSHACERLSDDDCLRARFSDAVNGNTGIDCFDHWVR 198 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401 +L G++HN RM AS + L + W++G ++F+ LLDGD ASN W+W Sbjct: 199 ELLVTGYLHNHARMWFASIWIFTLRLPWQLGADFFLRHLLDGDPASNTLSWRWVGGLHTK 258 Query: 402 SVPYF-RIFNPTIQGK-RFDPQG 422 Y R N + RF P+G Sbjct: 259 GKTYLARPDNIAKYTEGRFQPKG 281 >gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300072543|gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 11/166 (6%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL+ G++S R + + + + ++ EL WR FYR++ + + Sbjct: 75 LSPYLTHGMVSLRDVLAGVCQRYPLEVQHK------FVYELGWRAFYRYVWSRRGARIFD 128 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 E L + G TG P+ID A+R L G +HN RM AS++V Sbjct: 129 SLHAGPL--PEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMWLASYVVHL 186 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 V WR G ++ + LLDGDLASN+ WQW A TG+ PY FN Sbjct: 187 RKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGS-HKPYL--FN 229 >gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni] gi|238660033|emb|CAZ31051.1| DNA photolyase, putative [Schistosoma mansoni] Length = 533 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 118/421 (28%), Gaps = 46/421 (10%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQ 57 +K+ M V L W+ D R+ DN A A + + F P+ + R Sbjct: 63 LKSGNKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCLVPKFQAET---LRH 118 Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSN--------------------------FDDSI 91 F+ L +V+K + I F D Sbjct: 119 YTFMVEGLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTVA 178 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 + + S ++ + + K L + L + D ++P +H Sbjct: 179 QSVLSLIQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQVDAHNVVPVWHASDHL 238 Query: 152 LQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + P NL+ +R L+ I +F Sbjct: 239 EYAARTIRPKLHQKANNLMTEFPPLIRHPYCHQSSLSPIDWNYWISKFSGDLSVKPVDWA 298 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 G L L F E++ Y + R+ P S LSP+ G ++P++ E + Sbjct: 299 IPGTSGGLTTLHTFIYERLPKYADCRNDPTKNCLSNLSPWFHYGQIAPQRAI---MEVKL 355 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-- 326 S I RE + + P + W + Sbjct: 356 WRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQHAHDKRNPSYS 415 Query: 327 ----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 T + +AA QL G +H LRM A +++ + L D Sbjct: 416 EEIMISAETKDDLWNAAQHQLVRSGKLHGFLRMYWAKKILEWHESGPSAALK-LALYLND 474 Query: 383 G 383 Sbjct: 475 H 475 >gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis] Length = 515 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 70/436 (16%), Positives = 138/436 (31%), Gaps = 27/436 (6%) Query: 23 NKALYAACHNSDA---KVIAVFIA--TPEQWRQHGISARQSHFIYASLLQVQKSLSQ-KG 76 N AL AC ++ V+A F+ + R+ F+ L +K L + + Sbjct: 51 NVALELACQKANEHQVPVLACFVFPTDKRLDNFPPETERRCVFMLDGLRDFEKRLKKERN 110 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 I + I L C + V + Q + +EV + + Sbjct: 111 IDLVVLYGKC-EILIAKLAENCCEVVVDAGYMRYQNKYDEVNNNIECRFTKVETNVVVPV 169 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 + + +++K + +V A + L + L N+ Sbjct: 170 ELVSEKEEFAAYTIRPKIWKYAKQYLVEPECIMVIAKNKPLFSDNLPLIDLSQSDNVILA 229 Query: 197 FDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 + G A+ +L F +K+ Y + R+IP + G S LSPY++ G + Sbjct: 230 KLNADTTVKKVANIHGGHSEAVKLLDNFVSKKLPNYDKLRNIPGLDGQSGLSPYINFGHI 289 Query: 255 SPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 S + ++ + + EL + + + C+ K + Sbjct: 290 STVEIILKVNASKANKSVKDAFVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTLKL 349 Query: 314 IEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 K ++ ++G T +A +L G M+ +RM +++ R Sbjct: 350 QAKAKREYIYTSEQLEKGETHDQYWNACQLELVYEGKMNGYMRMYWGKKVIEWTANHTRK 409 Query: 372 GEEYFMSQLLD------GDLASNNGGWQWA------ASTGNDSVPYFRIFNPTIQGKRFD 419 + D D + G W A + R N + ++F Sbjct: 410 VMNNCAFSMNDKYELDGRDP-NGFAGVAWVFGKHDRAHSRRQIFGTLRYMNSSGLERKFK 468 Query: 420 PQ-GTFIRHWLPELNN 434 P +++H EL Sbjct: 469 PHLKDYVKH-CYELAG 483 >gi|68164596|gb|AAY87325.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium BAC17H8] Length = 269 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 9/178 (5%) Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ T LSPY+ GVLS + N D ++ EL WR++++ Sbjct: 59 SRNHLDGAVTR-LSPYIRHGVLSLDEVRNHAVAAVRDPREA-----EKFVQELAWRDYWQ 112 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P T + L TG ID L G++HN Sbjct: 113 RIYLAHPDRIWNDVEAYKTGFDAGEYEQDLPGDVADAETGVACIDQFATMLMETGYLHNH 172 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 RM A+++V V W+ G +F+ L+D D ASNN WQW AS IFN Sbjct: 173 ARMYLAAYIVHWRRVSWQAGARWFLEHLIDADPASNNLSWQWVAS---TFSNKPYIFN 227 >gi|294084366|ref|YP_003551124.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663939|gb|ADE39040.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum marinum IMCC1322] Length = 267 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 9/187 (4%) Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 Y R+ + LSPY+ G++S N + ++ Sbjct: 48 NINPDQYAHTRNYLDGDVSR-LSPYIRHGIISLNDVRNHALSISGE-----PQQTEKFIQ 101 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 EL WR++++ P T + L + G TG +ID + +L Sbjct: 102 ELAWRDYWQRRYRQNPHDIWHDIEAYKTGFTADDYAETLPADIEAGETGVAVIDHFIHEL 161 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403 T G++HN RM A+++V + W+ G ++F+ LLDGD ASNN WQW AST + Sbjct: 162 CTTGYLHNHARMYVAAYIVHWRRIKWQAGAQWFLHHLLDGDPASNNLSWQWVAST-FANK 220 Query: 404 PYFRIFN 410 PYF +N Sbjct: 221 PYF--YN 225 >gi|159471433|ref|XP_001693861.1| predicted protein [Chlamydomonas reinhardtii] gi|158283364|gb|EDP09115.1| predicted protein [Chlamydomonas reinhardtii] Length = 742 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 18/97 (18%) Query: 11 LVWLRNDLRITDNKALYAACHNSD------------AKVIAVFIATPEQWRQHGI---SA 55 LVW RNDLR+ D+ L AA ++ +++ P++ Sbjct: 24 LVWFRNDLRLDDHPGLTAAAAACRTGSGSGSGSGSGRALLPLYVLDPQRLSHLAYMPGGP 83 Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92 + ++L +++ L G + E Sbjct: 84 ---EALSSALQRLRSELRALGSDLVVRLGAWEQQLPE 117 >gi|296135394|ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gi|295795516|gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 396 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 9/186 (4%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ + T LSPYL+ G L R L L L EL WR Sbjct: 30 YARSRNHLEGRVTR-LSPYLTHGFLGLRDVVQHLSMRHGLGL------QDKLLQELGWRA 82 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F++ + + + L ++G T P+ID A+R L G++ Sbjct: 83 FFQQVWRHEGKGILQS--QHPGPLPDRAYAPALPADLREGRTDVPVIDQAVRTLYATGYL 140 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HN RM AS+ V V WR G ++ ++ LLDGDLASN+ WQW A TG+ F Sbjct: 141 HNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSSKPYLFNAD 200 Query: 410 NPTIQG 415 N Sbjct: 201 NVAKYA 206 >gi|254486393|ref|ZP_05099598.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. GAI101] gi|214043262|gb|EEB83900.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. GAI101] Length = 403 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 9/164 (5%) Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G++S + + ++ ++ E++WR +++ +A PSV Sbjct: 49 LSPYLRTGLVSQSEVLRTVLDQHSAKDA------DRYIAEVLWRSYWQGWLALRPSVWDA 102 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGY---TGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 S L Q W+ TG DA +L G++HN RM AS Sbjct: 103 YQADLKRLHNAVQTQSGLRQRWENACLGQTGIAPFDAWANELAHSGYLHNHARMWFASIW 162 Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 V L + W++G ++F+ LLDG ASN GW+W A PY Sbjct: 163 VHTLELPWQLGADFFLRHLLDGCPASNTLGWKWVAGIQTIGKPY 206 >gi|116071562|ref|ZP_01468830.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] gi|116065185|gb|EAU70943.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107] Length = 298 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 9/190 (4%) Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + K Y R+ T LSPY+ GV + + + + I + Sbjct: 51 QIQKMDGKRYARSRNHLNGAVTR-LSPYIRHGVFTLAEVRDAVFR-----GISKRDDGSK 104 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 +NEL WR+F++ + T + L + G TG +D Sbjct: 105 LINELGWRDFWQRMWQNLGDRINDDQEELKTGHSAASYSRELPDDVRDGCTGLACMDGFR 164 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 +L + GW+HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AST Sbjct: 165 NELVSTGWLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIAST-F 223 Query: 401 DSVPYFRIFN 410 PYF FN Sbjct: 224 SHKPYF--FN 231 >gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM 2228] Length = 454 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 121/383 (31%), Gaps = 8/383 (2%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R+ N+AL A ++ + I + F+ L +++ L + Sbjct: 31 RLEYNQALGYAIEKANELNQPLLIFFLIDAKFPEAKTAHFKFMLQGLKELKTKLKNEDFN 90 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + +D + L + + N+V + L + ++ Sbjct: 91 FYLIDYNKLEDIKQITKKASLLISEKAYLKHLRKWKNQVAAKVKIPFYLVESNLICPIEE 150 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + ++ K+ + K ++ + + Sbjct: 151 VSDKEEYAAYTIRKKINKIKNEYLKEYQLQRLKNKNKIEFENKNLKFVKNLNQYLENKNF 210 Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258 Q + F G + A L F K K+ Y E+R+IP + S LSPYL G ++ ++ Sbjct: 211 ELQQDLSDHFRGGYKAAKLKLNDFLKNKLKDYEEKRNIPHLNFQSDLSPYLHFGQIAAQE 270 Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 L + K EL + Y + + + + Sbjct: 271 IA--LAALNSEYDEKSFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEHQAD 328 Query: 319 DSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL---LVDWRIG 372 + L +++ T +AA +++ G MHN +RM +++ ++ Sbjct: 329 EREYLYTYQELENAKTHDKYWNAAQKEMLLTGKMHNYMRMYWGKKILEWNSDPEEAYQWA 388 Query: 373 EEYFMSQLLDGDLASNNGGWQWA 395 + LDG A++ G W Sbjct: 389 LKLNNKYSLDGRDANSYAGVAWI 411 >gi|331656727|ref|ZP_08357689.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] gi|331054975|gb|EGI26984.1| deoxyribodipyrimidine photo-lyase (DNA photolyase)(Photoreactivating enzyme) [Escherichia coli TA206] Length = 57 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 39/55 (70%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 M+ HLVW R DLR DN AL AAC NS A+V+A++IATP QW H +S RQ+ I Sbjct: 1 MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELI 55 >gi|224005941|ref|XP_002291931.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972450|gb|EED90782.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 485 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 72/407 (17%), Positives = 126/407 (30%), Gaps = 51/407 (12%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQC-SNFDDSIEWLD--SYCLQQRVTKLFYNRQYEIN 115 F +A+L +L +KG S ++ L+ + + + N + Sbjct: 9 AFGHAALHSFNATLGKKGQRIHVLSSISMIAKMVKELNPTTIVVDVSLLDRHCNHASRLR 68 Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLL------------PPGSILNHALQMYKVYTPFRK 163 + S + P I + + R Sbjct: 69 DKLHCTNENNDSDDDCDYTSRYTDAIPNIIEVLDDGLLIPMNKIPKALGRSRQGGRILRW 128 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 + + ++ P LT P + P N R+ Sbjct: 129 STFLINAILPMENVEKPTWTLTSLPPPPLATTEGMEIILPEQCIAPPQINNLSSWTRQLL 188 Query: 224 KEKVYYYVE-----------QRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + ++LSPYL GVLSP++ Sbjct: 189 LDWGEVSEDEAIRRAKSTKSNISSSLLTEEGSQNTKLSPYLRWGVLSPQRAAKCGVRRRD 248 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 L + + L + M S +K+ + L + W Sbjct: 249 LLWRDWSHLCYGLVGPLRRGDAVLEYMNKACSDDTSD------DKLNADNKDELFRLWCV 302 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 G TG+ ++DA MRQL GWM + R++ A+ LV+ + V W++G ++F L+D D A N Sbjct: 303 GNTGYELVDAGMRQLWAEGWMSRKARLLAAACLVEGMGVSWQLGRDWFAYTLIDHDPAIN 362 Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFD--PQG----TFIRHWL 429 WQ A G D Y G +++ P G ++ W+ Sbjct: 363 EMMWQNAGLCGVDPFYY---------GLKWEVPPSGIEEVEYVERWI 400 >gi|126735413|ref|ZP_01751159.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2] gi|126715968|gb|EBA12833.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2] Length = 386 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 11/195 (5%) Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 +R+ + S LSPY+ +++ A ++ E+ WR +++ Sbjct: 27 KRNYDNLAHVSALSPYIRHRIITEEDVLKATLARHS------PQTAEKFIQEVYWRTYWK 80 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWM 349 + PSV +S L Q W +G TG D +QL G++ Sbjct: 81 GWLEMRPSVWAMYRSDLQAALNRVQTESGLRQEWEAACKGDTGIDCFDHWAKQLADTGYL 140 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RI 408 HN RM AS + L + W +G ++FM LLDGD ASN W+W Y R Sbjct: 141 HNHARMWFASIWIFTLRLPWTLGADFFMRHLLDGDAASNTLSWRWVGGLQTIGKTYLARP 200 Query: 409 FNPTIQGK-RFDPQG 422 N T + RF P G Sbjct: 201 DNITKYTEGRFHPTG 215 >gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 419 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 11/224 (4%) Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 P G + S LSP++ +++ + Sbjct: 17 PNFKPTRAAGLARLAQFAERTGDLYDRCRNYDLGPEHRANVSALSPWIRHRLITETEVLT 76 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEKIEWNK 318 + + + +++E+ WR +++ + +P+V + + Sbjct: 77 ATLDAHS------FNASERFVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQLKSAGKDRR 130 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 + A G TG D ++L T G++HN RM AS + L + W +G ++F+ Sbjct: 131 LAANYAAAMAGETGIDGFDDWTKELLTTGYLHNHARMWFASIWIFTLGLPWELGADFFLR 190 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDP 420 L+DGD ASN W+W A PY R+ N + +RF P Sbjct: 191 HLMDGDPASNTLAWRWVAGIQTKGRPYVARVSNISKFTDQRFSP 234 >gi|297184363|gb|ADI20479.1| deoxyribodipyrimidine photolyase [uncultured alpha proteobacterium EB080_L58F04] Length = 278 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257 + + P GE + K R + S LSPYL R Sbjct: 5 HPNTKLMAPTRAAGEATLRAFAPRMGKGYTNGRNHDRGAGKHRDVSMLSPYLR------R 58 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 + +L GA ++ E+IWR +++ M P V + + + Sbjct: 59 RLVMEQDAVATAVLEHGAEGAEKFIQEVIWRGYFKGWMERRPVVWDQYREGLMRDLMALD 118 Query: 318 KDSHLLQAWKQG---YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 +D L + + TG D +L G++HN RM AS + L + WR+G + Sbjct: 119 RDRGLRRRVESAEAYQTGLDYFDNWAEELVETGYLHNHARMWFASIWIFTLELPWRLGAD 178 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDP 420 +F LLDGD ASN GW+W A PY+ R +N KRF+P Sbjct: 179 FFYRHLLDGDPASNTLGWRWVAGLHTRGKPYYARAWNIAKFTDKRFNP 226 >gi|78183829|ref|YP_376263.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902] gi|78168123|gb|ABB25220.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp. CC9902] Length = 298 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 9/186 (4%) Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 V Y R+ T LSPY+ GV + + + + + I + +NE Sbjct: 55 MDVKRYARSRNHVNGAVTR-LSPYIRHGVFTLAEVRDAVFQ-----GISKRDDGSKLINE 108 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WR+F++ + T + L + G TG +D +L Sbjct: 109 LGWRDFWQRMWQDLGDRIDDDQEAFKTGHSAASYSRELPDDVRDGCTGLACMDGFREELV 168 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 + GW+HN RM A++LV V W+ G ++F+ LLDGD ASN+ WQW AST P Sbjct: 169 STGWLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIAST-FSHKP 227 Query: 405 YFRIFN 410 YF FN Sbjct: 228 YF--FN 231 >gi|297537351|ref|YP_003673120.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301] gi|297256698|gb|ADI28543.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301] Length = 413 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 16/182 (8%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSPYL G ++ + + +K F A + EL WR+ Sbjct: 55 YDRNRNFLNGSVT-HLSPYLRHGCVTLNEAYEFIKRRFDA-------SADKLVYELAWRD 106 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ-LNTIGW 348 ++R + + P + +QG TG P +D + + L G+ Sbjct: 107 YWRQVWFSEGNAIYSDMEPPKVAIGHAPLSEDI----RQGKTGLPCMDGFINEDLFATGY 162 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408 +HN RM +S++V VDWR+ ++F + L+DGD+ASN+ WQW AST S PYF Sbjct: 163 VHNHARMWLSSYIVHHRKVDWRLAADWFEAYLIDGDIASNHLSWQWVAST-FSSKPYF-- 219 Query: 409 FN 410 FN Sbjct: 220 FN 221 >gi|149195752|ref|ZP_01872809.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] gi|149141214|gb|EDM29610.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera araneosa HTCC2155] Length = 359 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 9/156 (5%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LS Y+S G++S R ++ L + DL ++ EL WR++++ ++ + Sbjct: 35 SYLSAYISRGIISTRTVYDSLIKRGYDLEKI-----EKFVQELAWRDYWQSQWNYHGAKI 89 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + S + + A++QL T G++HN +RM A Sbjct: 90 NHDLRHSQMAYNKHGMPS----RLVDEKCSIQVFNTAIKQLKTTGYLHNHMRMYLAMSTC 145 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 W + L+DGD ASN WQW A Sbjct: 146 NIGGYHWHDPARWMYYHLIDGDWASNALSWQWVAGC 181 >gi|313231151|emb|CBY19149.1| unnamed protein product [Oikopleura dioica] Length = 187 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYAS 64 + L R DLR+ DN +L A + +++ VF+ PEQ + S F+ S Sbjct: 20 KIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMCES 78 Query: 65 LLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 L + + L + N +E + + + YN Y + RD + Sbjct: 79 LNDLGRQLKEEVDGKLHLFMGGN----LETIKKIKEVVNFSAIAYNEDYSVYARERDGEI 134 Query: 124 EKRLQHRVI 132 E+ + + Sbjct: 135 EEWAESNNV 143 >gi|148261327|ref|YP_001235454.1| DNA photolyase domain-containing protein [Acidiphilium cryptum JF-5] gi|146403008|gb|ABQ31535.1| DNA photolyase domain protein [Acidiphilium cryptum JF-5] Length = 214 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 V +VW + DLR+ D+ ++ V+ + I PE WR IS RQ F+ + + Sbjct: 5 VSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDISHRQYAFLAGCIEDL 62 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 +++ G +IE L++ + L+ + + Sbjct: 63 AAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTH 108 >gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa] Length = 448 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 63/397 (15%), Positives = 120/397 (30%), Gaps = 18/397 (4%) Query: 13 WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72 W+ D R+ DN AL A + + + V +A G ARQ F+ L +Q L Sbjct: 1 WMSRDQRVRDNWALIYAAQAAAKRGVPVAVAFSLVTEFLGAGARQFGFMVRGLQLIQPKL 60 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--QHR 130 I F + D E + + L + + + + ++L Sbjct: 61 EALNIPFFLLK----GDPSETIPKLVQDTGASLLVTDYAPLRLGRQWRQAVAEQLEVPFH 116 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + V + A + ++ + ++ ++ Sbjct: 117 EVDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLKEYPELPQQATWAHEVKPEAVDWE 176 Query: 191 SNIPRFFDYPFQAID-PMFPIGEQNALH-----ILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + I + + GE A+ Y ++ D S Sbjct: 177 ALIAEVLERGKAVPEVDWCKPGEDAAMEALAGGKGFLSKARLSKYDAQRNDPTVADALSN 236 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPYL G L+P++ + + + + Y H + Y S+ Sbjct: 237 LSPYLHFGHLAPQRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLDAA 296 Query: 305 KPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + T N + +++G T + +AA ++ G MH +RM A + Sbjct: 297 YDWARQTLNDHRNDKREHVYTKEQFEKGATHDKLWNAAQLEMVHCGKMHGFMRMYWAKKI 356 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 ++ E LDG + G W+ Sbjct: 357 LEWTASPEEALEIAIYLNDKYELDGRDPNGYVGCMWS 393 >gi|294669928|ref|ZP_06734951.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308200|gb|EFE49443.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 142 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 11/95 (11%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73 +LR+ DN AL+ A D + F+ + RQ F+ +L +++ L+ Sbjct: 10 FHRNLRLHDNAALHIAAGL-DRPTVGAFVF------PPDCNPRQRVFLRQTLAELRGGLA 62 Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 GI D+ + L+ + Sbjct: 63 ALGIPLHVFT----GDAADALNGLLARYPFAAFVS 93 >gi|254505021|ref|ZP_05117172.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11] gi|222441092|gb|EEE47771.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11] Length = 384 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 9/172 (5%) Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 R S LSPY+ ++S ++ L GA ++ E+ WR Sbjct: 8 QRNHDRGSGKHTSVSCLSPYIRRRLISEQEVV------TAALRNHGLDGAEKFIQEVFWR 61 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNT 345 +++ + P++ + + KDS L QA + G TG DA + +L Sbjct: 62 GYFKGWLERRPAIWTSYRQGLTADLEDLKKDSGLRQAVARAEAGQTGIDCFDAWVNELID 121 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 G++HN +RM AS + L + WRIG ++F LLDGD ASN W+W A Sbjct: 122 TGYLHNHVRMWFASIWIFTLKLPWRIGADFFYRHLLDGDPASNTLSWRWVAG 173 >gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 458 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 62/395 (15%), Positives = 119/395 (30%), Gaps = 11/395 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+++ RI+ N AL A ++ +FI F++A L +++ Sbjct: 23 VYWMQSAQRISYNHALSYAAERANKLNQPLFIFFLIDKDFPEAEYGHYEFMFAGLKELKN 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +K I F + D E + + K + + + + Sbjct: 83 RFEEKDINFFIFNYED-DAIFEQIAAKASLFVSEKSYLKNLKKWKAKTANLIKIPFYTVE 141 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + V + + + + L +P + Sbjct: 142 TNVICPVEEVSEKEEYAAYTIRKKINKIREQYLSDYNEIQPENKTVLKLPEEINKYLIED 201 Query: 191 SNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 + I F G Q A L +F K+ Y E+R+IP S LSPY Sbjct: 202 LDQYLAEMTFEDKISYKNFFKGGYQAAEQKLNEFLTNKIADYGEKRNIPYFDYQSDLSPY 261 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L G +S ++ L+ + EL + Y + + + Sbjct: 262 LHFGQISAQEIA--LRALENSKEAEEFLEELIVRRELSFNFVYYNQNYDGSLKDVLPDWA 319 Query: 309 PWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + K ++ K T +AA ++ G MHN +RM +++ + Sbjct: 320 AKSLKKHAADKRDYNYSYEQLKNAETHDQYWNAAQTEMKITGKMHNYMRMYWGKKILEWV 379 Query: 366 LVDWRIGEEYF---MSQLLDGDLASNNGGWQWAAS 397 + + LDG ++ G W Sbjct: 380 SEPEKAYQYALKLNNKYSLDGRDPNSYAGVAWCFG 414 >gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp. R2A62] Length = 378 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 10/190 (5%) Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287 Y D P G S LSPY+ +L+ + ++E D ++ E+ W Sbjct: 27 YARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRENHSDADA------EKFIQEVFW 80 Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLN 344 R +++ + PSV + S L AW G TG D + L Sbjct: 81 RTYWKGWLELRPSVWDDYVVERDQAWNDVQTQSGLRTAWEDACLGRTGIECFDHWAQDLA 140 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 G++HN RM AS + L + W +G ++F+ LLDGD ASN W+W A Sbjct: 141 ATGYLHNHSRMWFASIWIFTLRLPWSLGADFFLRHLLDGDAASNTLSWRWVAGLQTIGKT 200 Query: 405 YF-RIFNPTI 413 Y R N T Sbjct: 201 YLARPDNITK 210 >gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1] gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1] Length = 449 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 75/440 (17%), Positives = 129/440 (29%), Gaps = 37/440 (8%) Query: 11 LVWLRNDLRITDNK---ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN A + A + F P G S R F+ L + Sbjct: 22 VYWMSRDQRAEDNWALLAAADLARETGAPLHVAFALAP---GYPGASLRHYDFMLRGLAE 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + +L +G+ F + E+L + VT R + + + L Sbjct: 79 TEAALRARGVPFHLLLGDPAAVAPEFLRAIAAGACVTDFDPMRVKTLWKRAVAEAFAGPL 138 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 V P + P +Q ++ P + L Sbjct: 139 LEVDAHNVVPCVVASPRRE------YAAATFRPKIHKRLQEFLEPFPELPAFPDVALVAT 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 A P G A L F E++ Y +R+ P S Sbjct: 193 PPVDWGAARASLSVDAFPGPVPDIVPGPAAARAALDAFTAERLPGYAARRNDPNAGAVSG 252 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LSPY G L+P++ E L+ RE + + P+ Sbjct: 253 LSPYFHFGQLAPQRA---ALEVLAARAGHVADADAYLEELLVRRELSDNYCHYTPNYDRY 309 Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W K + + + ++ + + +AA R+L G +H +RM A Sbjct: 310 DALPDWARKTLDAHAGDEREHRYTPAQFEAAASHEALWNAAQRELVATGRIHGYMRMYWA 369 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FR 407 +++ + + LDG + G W+ G P+ R Sbjct: 370 KKILEWSPSPRQALDTALSLNDRYALDGRDPNGVVGVLWSVG-GLHDRPWATRPVYGQIR 428 Query: 408 IFNPTIQGKRFDPQGTFIRH 427 N ++FD +I Sbjct: 429 YMNERGCRRKFDANA-YIAR 447 >gi|119094174|gb|ABL60996.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium HF10_25F10] Length = 254 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 76/189 (40%), Gaps = 9/189 (4%) Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ T LSPY+ GVLS + N VD ++ EL WR++++ Sbjct: 44 SRNHLDGAVTR-LSPYIRHGVLSLDEVRNAALASVVDPKQA-----EKFIQELAWRDYWQ 97 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + +P T D+ L G TG ID + L G++HN Sbjct: 98 RIYLEHPERIWTDVESYKTGFDAAEYDAELPADIAAGETGIACIDQFIATLVETGYLHNH 157 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412 RM AS+ V V W+ G +F+ L+D D ASNN WQW AS IFN Sbjct: 158 ARMYLASYTVHWRRVSWQAGARFFLEHLVDADPASNNLSWQWIAS---TFSNKPYIFNLE 214 Query: 413 IQGKRFDPQ 421 K P Sbjct: 215 NVAKYCGPD 223 >gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia] Length = 453 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 120/390 (30%), Gaps = 7/390 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W++ R N AL A ++ + I +F + + R HF+ L Q++ S Sbjct: 22 YWIQASQRTKYNHALELAIQKANQEQIPLFCFF-GLTKYPAANQRPYHFMLEGLQQLKTS 80 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L+ + I+F + S D +I + + + Y R + + ++ + Sbjct: 81 LADRKILFGVAKQSPDDLAISI--AQNAKLLIVDCGYLRIQKQWRKKVADTIDCQFIQVE 138 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 ++ A N + +P Sbjct: 139 TDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQEYDISNITK 198 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 I +I F GE A L +F +K+ Y + R+ P++ TS LSPYL Sbjct: 199 VIDDLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPSLNATSNLSPYLHF 258 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MGKPFIPW 310 G++SP + + + EL Y + + Sbjct: 259 GMISPLHIYLEAMKFPPSESRESFLEELIVRRELSMNFCYYNDLYDKYEGLPDWAKNTLQ 318 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + + L ++ T ++A + G + +RM +++ + Sbjct: 319 EHAKDKRDYIYTLDQLEKAKTHDVYWNSAQLEAIHKGKISGYMRMYWGKKVIEWTESPQQ 378 Query: 371 IGEEYFM---SQLLDGDLASNNGGWQWAAS 397 E LDG A+ G W Sbjct: 379 AFEYLVFLNDKYHLDGRDANGYTGVAWCFG 408 >gi|329133696|gb|AEB78729.1| DNA photolyase [Acinetobacter sp. Ver7] Length = 62 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 46/62 (74%), Positives = 54/62 (87%) Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 HNR+RMI A FL K+LL+DWR GE++FM L+DGDLA+NNGGWQW ASTG D+VPYFRIF Sbjct: 1 HNRVRMIVAIFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIF 60 Query: 410 NP 411 NP Sbjct: 61 NP 62 >gi|67906774|gb|AAY82837.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium MedeBAC46A06] Length = 287 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 8/168 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ G+LS + N D K + R + H + V Sbjct: 86 TRLSPYIRHGILSLDEVRNAALAMVDDPKQAEKFIQELAWRDYWQRLYLAHPEWIWADVE 145 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K ++ L G TG ID + L G++HN RM A++ V Sbjct: 146 SYKTGFDSSDYDP-----DLPDDIAAGETGVACIDQFIATLVETGYLHNHARMYLAAYTV 200 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410 V W+ G +F+ L+D D ASNN WQW AS IFN Sbjct: 201 HWRRVSWQAGARWFLGHLIDADPASNNLSWQWIAS---TFSNKPYIFN 245 >gi|56752236|ref|YP_172937.1| deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301] gi|56687195|dbj|BAD80417.1| similar to deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301] Length = 305 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS +R+ + + EL WR++++ + + Sbjct: 85 TRLSPYIRHGVLSLATVRDRVLAQIRQRSDG-----EKLITELAWRDYWQRIYWEWGDRI 139 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T L + TG +D R+L G++HN RM A++LV Sbjct: 140 WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETGYLHNHARMWMAAYLV 199 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 + W+ G +F+ LLDGD ASNN WQW AST + +F Sbjct: 200 HWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVASTFSTKPYWF 243 >gi|81300676|ref|YP_400884.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus elongatus PCC 7942] gi|81169557|gb|ABB57897.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus elongatus PCC 7942] Length = 293 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ GVLS +R+ + + EL WR++++ + + Sbjct: 73 TRLSPYIRHGVLSLATVRDRVLAQIRQRSDG-----EKLITELAWRDYWQRIYWEWGDRI 127 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 T L + TG +D R+L G++HN RM A++LV Sbjct: 128 WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETGYLHNHARMWMAAYLV 187 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 + W+ G +F+ LLDGD ASNN WQW AST + +F Sbjct: 188 HWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVASTFSTKPYWF 231 >gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp. YO3AOP1] Length = 455 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 69/432 (15%), Positives = 134/432 (31%), Gaps = 20/432 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ + R N L A S+ + + P + +AR F+ +L+ +K Sbjct: 25 IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKYSNARYYKFMLDGVLEAKK 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 S+ ++GI F + + + + + K + ++ +L + Sbjct: 85 SIEERGIKFIIEKSDGIEQRVIEISKNAVALITDKAYLKYYRKLYSDITKQLDIPFYEVE 144 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + ++ I+ + Sbjct: 145 SDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKLEPREPKIKSVNLDFGIKELTLNSS 204 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 I + F G A L++F ++K++ Y E R P + S LSPYL Sbjct: 205 LEILDILNIDKSVSLSPFIGGYSQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLH 264 Query: 251 IGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFI 308 G +SP + L E D + EL Y + Y + Sbjct: 265 FGQISPIEVALEILSEYKKDENVDSFFNELIAWRELARNFCYYNPSYNHYEGIPDWAKKT 324 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 K + + L+ ++ T +AA +L G MHN +RM +++ Sbjct: 325 LEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNFMRMYWCKKIIEWTQDP 384 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKR 417 + LDG + G W G P+ R + + + Sbjct: 385 KHAFDIACYLNDKYELDGRDPNGYAGISW--CFGTHDRPWKERKIFGKVRYMSASGLEAK 442 Query: 418 FDPQGTFIRHWL 429 FD I+ ++ Sbjct: 443 FD-----IKKYV 449 >gi|313620255|gb|EFR91705.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378] Length = 158 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 12/167 (7%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY A D +I +F PEQ+ + S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIKG--SPSHQAF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L++ Q F + IE L + K+F+NR RD+ Sbjct: 57 QQELNK-NTHLQI----MFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111 Query: 128 QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQAD 173 + I L + A + YK++TP+ K + + + Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMP 158 >gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum] Length = 549 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 25/407 (6%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64 S L LR LR + A A ++ +IA+ + PE Q F+ Sbjct: 18 SYVLYILRC-LRTKYSAAFSFASERANKSQVPLIALHLYVPEHHNVP-----QRVFLLEG 71 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L ++++S+ + + ++ D+++ C ++ + Y + ++ L Sbjct: 72 LKELKESMGSLQVKLLCVKANDNKDALKIALQLCE--GACEVVLDAAYLRGDREFEEQLN 129 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQM------YKVYTPFRKALIQNLVQADLRSL- 177 L R + + + P ++ + + + K++ + L + + Sbjct: 130 HMLIERCRKLTRIEGNVSVPINLSSKSAEWGARTLRPKIWQHLKAMLAEKWEDVPMIPCG 189 Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 I+ P D F GE A +L F K+ Y R+I Sbjct: 190 NWAKLIKGNIPEMNLEEELKRAQSDCKSDSGFVGGETVAQRMLSFFISNKLVSYHPGRNI 249 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295 P + S LSPYL G++S + R+K+ +L Y Sbjct: 250 PGSKYQSLLSPYLHFGMISAIEIIKRVKDAKAPKHAIDSFIEELLVRRDLSHNFVYYAKD 309 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + C+ ++ + +K ++ + + T P +AA ++ MH + Sbjct: 310 NYDSLDCLPDWAQKTLKQHKNDKRDYIYTSEELEDARTHDPYWNAAQLEMVHTNKMHGYM 369 Query: 354 RMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 RM D +R E LDG + G W Sbjct: 370 RMYWGKKVIEWTPDYETAYRFLIEQNDKHELDGRDPNGYTGVMWVFG 416 >gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis str. Marburg] Length = 444 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 57/381 (14%), Positives = 123/381 (32%), Gaps = 29/381 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W++ +R N AL A +++ +I +F T E ++R F+ L Sbjct: 23 IYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDEF---PNANSRHYRFLIEGLRD 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +L ++G + + ++ + Sbjct: 80 VGDALMKRGARLVVENERPP-------SAVMRYSDEASAVVVDRGYLDIQKEWVDELAES 132 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 H + + + ++ + + L + +V R L V ++ L Sbjct: 133 LHVPLMQVESNVIVPVETASPKEEYSAGTFRPKITRELERFMVPLKERRLAVDSLDLDPG 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 +++ F + +F G A+ + +F EK+ + + R+ P S +SP Sbjct: 193 PDLNDVTGKFRASEELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNMSP 252 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP K ++ RE + + + + + Sbjct: 253 YLHFGHISPLYL--------AMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSIRCL 304 Query: 308 IPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 W +K + +++ T P +AA +++ G MH +RM + Sbjct: 305 PEWAQKTLMEHARDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWGKKI 364 Query: 362 VKDLLVDWRIGEEYFMSQLLD 382 ++ R + L D Sbjct: 365 LEWTDHPERAYD--IAIYLND 383 >gi|115480339|ref|NP_001063763.1| Os09g0532700 [Oryza sativa Japonica Group] gi|52075945|dbj|BAD46025.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa Japonica Group] gi|52077228|dbj|BAD46272.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa Japonica Group] gi|113631996|dbj|BAF25677.1| Os09g0532700 [Oryza sativa Japonica Group] Length = 695 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 7/173 (4%) Query: 13 WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W ++DLR+ D+ L AA V+ +++ G S + +L ++ Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILD--GYSDTMLELLLFALEDLKMV 106 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + ++ + + + + +F + E +E L + Sbjct: 107 LKSQESDLLI----GLGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNAS 162 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +++ S+ ++ + + + + L + +PA+ + Sbjct: 163 FLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNI 215 >gi|304319762|ref|YP_003853405.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503] gi|303298665|gb|ADM08264.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503] Length = 424 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 15/198 (7%) Query: 231 VEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 RD S LSPYL +++ ++ F ++ E+ WR Sbjct: 48 NRNRDDGPADRRYVSCLSPYLRHRLITEQEVIAAALNRFAFSTA------EKFIQEVYWR 101 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIG 347 +++ + P V E + D QA +G TG DA ++L G Sbjct: 102 TYFKGWLERRPWVWDLYTDDRDRRLNELSGDQATAYQAAVEGRTGIDGFDAWTKELIATG 161 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF- 406 ++HN RM AS + L + W +G ++F LLDGD ASN W+W Y Sbjct: 162 YLHNHARMWFASIWIFTLRLPWSLGADFFHRHLLDGDAASNTLSWRWVGGLHTKGKTYLA 221 Query: 407 RIFNPTIQGKRFDPQGTF 424 R N G F Sbjct: 222 RPSNIEKFT-----NGRF 234 >gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV] gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV] Length = 502 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 61/412 (14%), Positives = 128/412 (31%), Gaps = 33/412 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + + + V+ RQ F+ L+ Sbjct: 50 VYWMWRDCRVQDNWALIYAQYLAFKTKSPLYIVYCLPKTYLNAT---RRQYQFLIEGLIG 106 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + + I F D + L + L+ + + + ++ + + L Sbjct: 107 LSEECVELDITFVILD----DRADVVLIDWVLKHDICAVITDYNPLQLQMNVVVTVLQNL 162 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + D ++P ++ + Y + ++N + + P + Sbjct: 163 PAEIYFAQVDAHNVVPGWTLSDTGKFDYDQFKVKINEQLENYLTRFSLVIRHPYKSVVAI 222 Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + +N ++ G A+ L F + +Y Y Sbjct: 223 ESSTNTAIDWNQLLSSRSIDHSVKRINWTEAGYDAAILRLASFIQCSLYNYKNCIQDLTS 282 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKSGAFSWLNELIWREF 290 S LSP+L G +S ++ L+ ++ + + K+ N L REF Sbjct: 283 TNQSDLSPFLHFGFISAQRVIYHLRFCITKQSVLQKTISKVKLEKNINRFIENCLYRREF 342 Query: 291 YRHLMAF---YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 + + Y S K ++ L+ + T + + A L G Sbjct: 343 ADNFCYYNSNYNSFIAPSTQSKLYIKRHIRFFTYGLKELENSQTHDALWNRAQEDLRENG 402 Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAA 396 +H +R+ A +++ +DG S G +A Sbjct: 403 KIHPFIRVYWAKKILEWTPTPEEALNRAIYLNQRYAVDGCDPSGYVGCLYAM 454 >gi|149916364|ref|ZP_01904884.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. AzwK-3b] gi|149809818|gb|EDM69670.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. AzwK-3b] Length = 407 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 10/183 (5%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSPYL +L+ + + A ++ E+ WR +++ + Sbjct: 45 HSHVSTLSPYLRHRLLTEDEVLRTVLARHS------PQAAEKFIQEVFWRSYWKGWLEMR 98 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 P+V +S L Q W G TG D +L G++HN RM Sbjct: 99 PAVWTAYRAGLAAALNRTQVESGLRQRWSDACNGQTGIDGFDHWAHELIQTGYLHNHARM 158 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ 414 AS V L + W +G ++F+ L DGD ASN GW+W A Y R N Sbjct: 159 WFASIWVFTLGLPWELGADFFLRHLHDGDPASNTLGWRWVAGLQTRGKTYLARPDNIARY 218 Query: 415 GKR 417 +R Sbjct: 219 TER 221 >gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB] gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter fumaroxidans MPOB] Length = 468 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 64/412 (15%), Positives = 120/412 (29%), Gaps = 35/412 (8%) Query: 2 KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQS 58 + + + L W++ R N AL A H +++ ++ VF T + + R Sbjct: 17 QKRSKGAYVLYWMQQSQRSEFNHALEYAAHRANSLRQPLVVVFGLTGDY---PEANLRHY 73 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + SL +GI S L F + Sbjct: 74 TFMLEGLEETGASLQARGIKLVVMHASP--------PDAALAAASEASFLVCDRGYMRHQ 125 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 + ++P + + A + P ++ + + Sbjct: 126 ALWRAAVAAAAPCPVVQVEADAIVPVETASSKAEYAARTLRPRVHTHARSFLTEPAPAEL 185 Query: 179 VPAIRLTGPVTPSNIPR-------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 + D ++ + G A + F ++ + Y Sbjct: 186 RKSSLDADLNGMDVTDTARVLRKLRADRSVPSVTRYYRGGTSRAKELFETFLRDDIGRYT 245 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E R+ P S +S YL G +SP RL E + + + L+ RE Sbjct: 246 EDRNQPHAGAVSHMSMYLHFGQISPVYLALRLGEVGRERDTQKAAFLEQL---LVRRELA 302 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNT 345 + + + + W + + T +AAM ++ Sbjct: 303 LNFVHHTRNYDSYECLPRWARETLARHRKDRREFRYGRQELENLRTHDEYWNAAMTEMKF 362 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNG-GW 392 G+MHN +RM +++ + LDG D S G GW Sbjct: 363 TGYMHNHMRMYWGKKILEWSETPEEAFQTILALNNKYFLDGRDPNSYAGAGW 414 >gi|302384123|ref|YP_003819946.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302194751|gb|ADL02323.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides ATCC 15264] Length = 418 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 67/209 (32%), Gaps = 8/209 (3%) Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 P P G Q + + S LSP+L +L+ Sbjct: 1 MPEPLDRFPPTRAAGLQRLADFVPHAGEAYAMGRNTDAGPGGHLAVSGLSPWLRHRLLTE 60 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 R+ + E + W + + + + Sbjct: 61 REVVAGVLERHDPRAAQRFIQEVLWRT--------YWKGWLQMNPEVWTRYQAERDAPRA 112 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + + + G TG D R+L G++HN RM AS + L + W +G ++F Sbjct: 113 SGLERAVAQAEAGATGIEGFDDWARELVRTGYLHNHARMWFASIWIFTLGLPWALGADFF 172 Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPY 405 + LLDGD ASN W+W A Y Sbjct: 173 LRHLLDGDPASNTLSWRWVAGLQTVGKTY 201 >gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium yellowstonense SS-5] Length = 455 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 70/436 (16%), Positives = 134/436 (30%), Gaps = 28/436 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS-HFIYASLL 66 + W+ + R N L A S+ ++ F+ T + S + F+ +L Sbjct: 25 IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKY----KYSNARYYKFMLDGVL 80 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 + +KS+ ++GI F + + I + + K + ++ +L Sbjct: 81 EAKKSIEERGIKFIIEKSDDIKQRIIEISRSAVALITDKAYLKYYRKLYSDIAKQLDIPF 140 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + + + I+ Sbjct: 141 YEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKLAPREPKIKSVNLDFGIKELT 200 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + I + F G A L++F ++K++ Y E R P + S LS Sbjct: 201 LNSSLEILDILNIDKSVSLSPFIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLS 260 Query: 247 PYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMG 304 PYL G +SP + L E D + EL Y + Y + Sbjct: 261 PYLHFGQISPIEVVLEILSEYKKDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDW 320 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + + L+ ++ T +AA +L G MHN +RM +++ Sbjct: 321 AKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNYMRMYWCKKIIEW 380 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTI 413 + LDG + G W G P+ R + + Sbjct: 381 TQDPKHAFDIACYLNDKYELDGRDPNGYAGISW--CFGTHDRPWKERKIFGKIRYMSASG 438 Query: 414 QGKRFDPQGTFIRHWL 429 +FD I+ ++ Sbjct: 439 LEAKFD-----IKKYV 449 >gi|171057934|ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] gi|170775379|gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] Length = 420 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 Y R+ T LSPYL+ G+++ + + + + + EL WRE Sbjct: 39 YARTRNHLDGAVTG-LSPYLTHGLITLPEVLAGVLQRERLEVRHK------LVFELGWRE 91 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F+RH + + L +Q TG P+ID A+R L G + Sbjct: 92 FFRHAWGHAGDAILQSLHTGPR--PDETCAPVLPADIRQARTGVPVIDEAVRTLYATGTL 149 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 HN RM AS++V V WR G ++ ++ LLDGDLASN+ WQW A TG Sbjct: 150 HNHARMWLASYVVHLRHVHWRAGADWLVAHLLDGDLASNHLSWQWVAGTG 199 >gi|167825045|ref|ZP_02456516.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9] Length = 58 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 M ++ +++ +VW R+DLR++D+ AL A S VI V++ + A + Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW 58 >gi|325285641|ref|YP_004261431.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489] gi|324321095|gb|ADY28560.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489] Length = 372 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 10/166 (6%) Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R+ T LSPY+S GV+S + + ++ EL WR++++ Sbjct: 33 TRNYINGAVT-HLSPYISRGVISTKYILKEVL-----SQGHKPLEIEKFIQELAWRDYWQ 86 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + + ++ + TG +D A+R+L G+MHN Sbjct: 87 QVWIAKGD----EINTDLKHTQTPVSNIQIPKSIVEANTGIIAVDNAIRKLEQTGYMHNH 142 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 LRM AS W + ++ LLD D ASN WQW A + Sbjct: 143 LRMYAASLACNIGQSHWLLPAKWMYYYLLDADWASNALSWQWVAGS 188 >gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] Length = 476 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 61/418 (14%), Positives = 126/418 (30%), Gaps = 19/418 (4%) Query: 23 NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 N AL A ++ + + V + +AR F+ + +V L+++GI + Sbjct: 53 NPALEYAVEEANGRGLPVLVCYGLAEGIPEANARHWAFLLEGMAEVGPELAKRGIAYVAR 112 Query: 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142 + ++ + + + + + +Q ++ Sbjct: 113 RQPPV-ETALLYAADAALVICDRNYLKPVRRFYADFAARAPCRVVQVEGEVVVPVETASP 171 Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202 + P ++ A L P + Sbjct: 172 KHEVAARTLRPKIRRLLPEYLVPLEERSVAHRADHLSFESTLDLSDVPRLVASLKADQSV 231 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 F G A L + + +Y + R P S +SPYL G +SP Sbjct: 232 RPVRRFKGGTTQAEATLSHYLDARFNHYAQIRGRPEAGAASHMSPYLHYGQISP---VAI 288 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EW 316 + A ++ RE + + + P+ + W K + Sbjct: 289 ALKVQAAATGGEDDKAAYLEELIVRRELAMNHIYYEPNYDSYEAAPAWARKTLDAHRGDP 348 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 + + +++G T +AAM ++ G+MHN +RM +++ E Sbjct: 349 RPYLYTPEQFERGETHDRYWNAAMMEMRETGYMHNHMRMYWGKKILEWSASPEEAFETAL 408 Query: 377 M---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF-NPTIQG----KRFDPQGTFIR 426 +DG A++ W + ++ N G K+FD G ++R Sbjct: 409 RLNNKYFIDGRDANSFTNVTWLFGLHDRPWGPRPVYGNVRSLGAATLKKFDADG-YVR 465 >gi|118773269|gb|ABL14178.1| cryptochrome 2 [Meleagris gallopavo] Length = 144 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 + LP+L P++YI+ P + + K + ++YP P+V+H + + + + Sbjct: 1 KRLLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQ 60 Query: 480 Q 480 Q Sbjct: 61 Q 61 >gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1002] Length = 380 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 7/168 (4%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 TS LSPY++ G+++ + ++ ++F ++ E++WR Y Sbjct: 37 NRSNTSCLSPYITHGIINELEVVDKSLKKFSFAKN------EKFIQEVLWR-VYWKGWLE 89 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 I + K++ +G T + + +L ++HN RM Sbjct: 90 LRPNVWSDYLIELGKFKGEFKNNQNYLDAIEGKTNIDCFNEWVIELKENNYLHNHTRMWF 149 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 AS + L + W++G E+FM L DGD ASN GW+W A Y Sbjct: 150 ASIWIFTLELPWQLGAEFFMQHLFDGDAASNTLGWRWVAGVQTQGKHY 197 >gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13] Length = 357 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 150/352 (42%), Gaps = 25/352 (7%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK- 105 S + FI +L +Q+SL++ I + SN + +E+ C+ Sbjct: 3 SGWKLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTG 62 Query: 106 --LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + N +Y+ +E+ RD L + HR+ K + DS ++ PG I Y V+TP+ K Sbjct: 63 TIITANIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYK 122 Query: 164 ALI---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--- 217 + N ++ + I + F P + Sbjct: 123 KWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSE 182 Query: 218 -----ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---- 268 L+ F K Y ++D+ + GTS LS Y++ G +S R N+ + Sbjct: 183 EAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIM 242 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +K S +++ E+ WR+FYRH M +P MG P+ T I+W + + W Sbjct: 243 SKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCT 302 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 G TG PI+DA MR+L G+++NR RMITASFL K L+ +G L Sbjct: 303 GNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMGGTLVYETL 354 >gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales bacterium HTCC2083] gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 408 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 11/225 (4%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 P G + + S LSP++ +++ + R Sbjct: 24 FTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRHRLITEEEVLTRA 83 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI---PWTEKIEWNKDS 320 ++ E+ WR +++ + +PSV + Sbjct: 84 LARHSPSAASK------FVQEVFWRGYFKGWLEQHPSVWKAFRHDLRLAYARLENDEVLK 137 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 H +G +G D + +L G++HN RM AS + L + W++G ++FM L Sbjct: 138 HDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLPWQLGADFFMQHL 197 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGT 423 LDGD ASN W+W Y R N G RF+P+G Sbjct: 198 LDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEGQ 242 >gi|167720443|ref|ZP_02403679.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98] Length = 108 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 + ++ +++ +VW R+DLR++D+ AL A S VI V++ E+ + + Sbjct: 49 LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106 Query: 61 IY 62 ++ Sbjct: 107 LH 108 >gi|220931344|ref|YP_002508252.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168] gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168] Length = 466 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 64/361 (17%), Positives = 116/361 (32%), Gaps = 18/361 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R N AL A + S+ ++ F + R F+ L + Sbjct: 23 LYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTSF---PEANRRHYQFMLEGLQE 79 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLEK 125 V+KSL +GI D ++ Y V + + R + N ++ Sbjct: 80 VKKSLYNRGIKMIIESVPPDKDILK-FAEYASLLVVDRGYLKIERTWRNNVSQQIDCPLI 138 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIR 183 +++ VI S + K+ + + + DL+ + Sbjct: 139 QVESNVIVPVEVASSKEEYAAYTIRKKLYRKLPEFLHPLHTRTIRVSSLDLKLSFINYKD 198 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 + + R ++ G AL + F K+ Y E R+ P S Sbjct: 199 IPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALYNDFLHNKIKDYHEYRNDPVKNWIS 258 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 +SPYL G +SP + I + +I RE + + + P Sbjct: 259 NMSPYLHFGQVSPLHLIIKGNNYCKKHEIDKGF-KEFFEELVIRRELSFNFVYYNPDYDS 317 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 K W +K ++ + T P +AA ++L G +H +RM Sbjct: 318 IKSLPDWAKKTLKEHENDTREFSYSLQELEDAKTHDPYWNAAQKELLLTGKIHGYMRMYW 377 Query: 358 A 358 Sbjct: 378 G 378 >gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A] gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A] Length = 458 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 60/398 (15%), Positives = 130/398 (32%), Gaps = 18/398 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ +RI N AL A ++ K + + + + R F+ L ++Q+ Sbjct: 23 LYWMQQSMRIQYNHALNYAIELANKKKLPLIVWFNILPNYPEANLRHYTFMLEGLKELQQ 82 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125 ++ I F+ ++ +LD + + K + E+ ++ +D Sbjct: 83 DFVKENIHFELSIGKLTENIKPYLDDVDTIIMDRGYLKPQRQMRNEVYKIVKDTHAIDII 142 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +++ +I G+ + M K+ + L + + P Sbjct: 143 QVETDLIIPVEVLYPKAAYGAYVIRPKVMEKLPQYMDYRELSRLDNIEKTKVYEPLDLSN 202 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 N+P G + + ++ ++ ++R PA+ S + Sbjct: 203 IDEVVKNLP----IDMSVKPYHKFKGGRKEAYKHLEYFFNQLLKDYDKRSDPALHIQSYM 258 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 S YL G +S ++ L + + S F + Y + Sbjct: 259 SMYLQFGQVSDQEILRMLYDHPFYKIYPEMSEGFIEQLVVRRSLAYNFVTYIKDYDVFEF 318 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + + + L T +AAM++ G+M N LRM A Sbjct: 319 MTESWAYETMYEHERDLRTHIYSLEDIEFSKTHDIHFNAAMKEARITGFMANYLRMYWAK 378 Query: 360 FLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 +++ + ++I +DG ++ G W Sbjct: 379 KIMEWSGSMKDAYQIIVYLNNKYFIDGRNPNSYGNIAW 416 >gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp. TM1040] gi|99035484|gb|ABF62342.1| Deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp. TM1040] Length = 410 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%) Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK--- 313 R+ + L A ++ E++WR +++ M P V + Sbjct: 56 RRLLTEPEVIAAALAAHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVAL 115 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 E + + A + G TG D ++L G++HN RM AS + L + WR+G Sbjct: 116 EEDPGLAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGA 175 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 ++F+ LLDGD ASN W+W A PY Sbjct: 176 DFFLRHLLDGDPASNTCSWRWVAGLHTRGKPYV 208 >gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1] Length = 412 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 + SQLSP+L G+LS R+ E ++ E+ WR +++ + Sbjct: 40 MLSNVSQLSPWLHAGLLSEREVILAALNEHGPGKA------EKFIAEVFWRVYFKGYLEQ 93 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLR 354 PSV I +S L + +++ G TG D +R+L G++HN R Sbjct: 94 RPSVWDAYKQGRDGALIAVENNSGLAKVYEEAVAGRTGIEAFDQWVRELVQTGYLHNHAR 153 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTI 413 M AS + L +DW++G ++F+ L+DGD ASN W+W A Y R N Sbjct: 154 MWFASVWIFTLKLDWQLGADFFLRHLMDGDAASNTLSWRWVAGLHTKGKNYAARASNIKR 213 Query: 414 QGKRFD 419 +R D Sbjct: 214 YTERRD 219 >gi|254442576|ref|ZP_05056052.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium DG1235] gi|198256884|gb|EDY81192.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium DG1235] Length = 423 Score = 73.3 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 12/190 (6%) Query: 230 YVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 Y R+ SQLSPY+ G++S + + + +L E+ Sbjct: 39 YRANRNHDGGAGQHVYVSQLSPYIRNGLISEEEVVATILKSHTFAEA------EKFLQEV 92 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WR +++ + P + K + +A TG D ++L Sbjct: 93 FWRVYWKGYLENRPVLWTRYREDLEILKNKAADYQDYPRA-DSASTGIKCFDTWSQELQE 151 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++HN RM AS + L + W++G ++F+ LLDGD ASN W+W A Y Sbjct: 152 TGYLHNHTRMWFASIWIFTLKLPWQLGADFFLRHLLDGDPASNTLSWRWVAGLHTKGKNY 211 Query: 406 F-RIFNPTIQ 414 R N Sbjct: 212 LARSSNIAKF 221 >gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 140/464 (30%), Gaps = 50/464 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL A ++ + V + G +AR F+ L V++ Sbjct: 22 LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L ++GI + + + L ++ Sbjct: 82 ALQRRGIAMIIRRIPPVEGVVALARRAALVVTDRGYLRYQRQWREAAAARIDCPFIQVES 141 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---------PA 181 + + + ++ ++ F L + + P Sbjct: 142 DVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEALLDEALPGEPV 201 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + S + + + G + A L F +K++ Y E + P++ G Sbjct: 202 FADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYHEDKKDPSLDG 261 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------------------AFS 280 S+LSP+L G +SP + + ++ L +G A Sbjct: 262 LSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVGPSPNPGLAAF 321 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFP 334 ++ RE + + P+ W + + + + T Sbjct: 322 LEELIVRRELAMNFAYYNPAYDQFAALPAWAQATLHSHRLDSREFNYTKAELENACTHDR 381 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGG 391 +AA +L G MH +RM +++ +RI E + LDG + G Sbjct: 382 YWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDTYALDGRDPNGYTG 441 Query: 392 WQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQGTFIRH 427 W G P+ R N ++FD + ++R Sbjct: 442 IAW--CFGKHDRPWGERAIFGKVRYMNAAGLRRKFDIEA-YVRK 482 >gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299] gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299] Length = 478 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 68/425 (16%), Positives = 114/425 (26%), Gaps = 49/425 (11%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A + VF PE ARQ F+ L + Sbjct: 20 VYWMSRDQRAMDNWALCHALAVAREHRRPLHVVFALVPEFAN---AGARQYCFMLRGLRE 76 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L GI F Q + S+ + + + L + + L Sbjct: 77 LESRLRDLGIPFHLAQGPDPGVSV---PAAAERLGCSMLVTDFSPLRIGRAWRDSVTTLL 133 Query: 128 QHRVICKSFDDSVL--------------------------LPPGSILNHALQMYKVYTPF 161 + + D+ + + + T Sbjct: 134 CPVDVPVAEVDAHNVVPAWVASEKQEYAARTIRKKINGRLTDFLTDFPTVEDVREAATEA 193 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 ++ V++ I +P AL Sbjct: 194 AAGAEKHPVRSAGSIDWDGLIDAARAGAGGAVPEVLSPSPPRSRAPGETAALAALFGTSA 253 Query: 222 FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 R+ P + S LSPYL G LS ++C E P++ Sbjct: 254 SFLPNRLALYGSRNDPNVPEALSGLSPYLHFGQLSAQRC---AVEATKHRAKHPEAVDSF 310 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFP 334 ++ RE + P W + S + T Sbjct: 311 LEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALHASDAREFAYTLEELEHSRTHDE 370 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS----QLLDGDLASNNG 390 + +AA ++L +G MH LRM A +++ + LDG + Sbjct: 371 LWNAAQKELTHLGTMHGFLRMYWAKKILEWTGEGPEEALRRAIYLNDRYQLDGRDPNGYV 430 Query: 391 GWQWA 395 G WA Sbjct: 431 GCMWA 435 >gi|167739437|ref|ZP_02412211.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14] Length = 53 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46 M ++ +++ +VW R+DLR++D+ AL A S VI V++ Sbjct: 1 MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDER 45 >gi|148259631|ref|YP_001233758.1| deoxyribodipyrimidine photolyase-like protein [Acidiphilium cryptum JF-5] gi|146401312|gb|ABQ29839.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Acidiphilium cryptum JF-5] Length = 396 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 G TG D+ R++ ++HN RM AS + L + W +G ++F+ LLDGD+A Sbjct: 127 CAGQTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIA 186 Query: 387 SNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQG 422 SN W+W A Y R N G RFDP+G Sbjct: 187 SNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 224 >gi|255607778|ref|XP_002538784.1| DNA photolyase, putative [Ricinus communis] gi|223510429|gb|EEF23599.1| DNA photolyase, putative [Ricinus communis] Length = 351 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 L E D+ + A EL +R+++R + + M P + + Sbjct: 91 LPETMADVGARFGKHAHKLAAELSYRDYFRQVWYRFGEAIMQPMESPKVGLGDRPMPDFI 150 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 QG+TG +D +RQL G++HN RM A+++V L VDWR ++F +QLLD Sbjct: 151 ----AQGFTGLVCMDEIVRQLQQHGYVHNHARMWFAAYVVHWLKVDWRQAADWFETQLLD 206 Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 GD ASN+ WQW AS+ ++ F N G Sbjct: 207 GDTASNHLSWQWIASSFSNKPYLFNKENLIKFG 239 >gi|83859814|ref|ZP_00953334.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633] gi|83852173|gb|EAP90027.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633] Length = 414 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 5/169 (2%) Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC---MGKPFIPWTEKI 314 + + L A ++ E+ WR +++ + +V + +T Sbjct: 61 RLVQEAELAQAALSAHGLQAAEKFIQEVCWRTYWKGWLELRSAVWADYKAEREQAFTAVS 120 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 E + +A +G TG DA +L G++HN RM AS + L + W +G + Sbjct: 121 EDQALAQRYEAAIEGRTGLEGFDAWATELMQTGYLHNHARMWFASIWIFTLDLPWVLGAD 180 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQ 421 +F+ L+DGD ASN W+W Y R N K RF P Sbjct: 181 HFLRHLIDGDAASNTLSWRWVGGLQTVGKTYLARASNIEKYTKGRFAPD 229 >gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase) [Plasmodium knowlesi strain H] gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium knowlesi strain H] Length = 923 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 63/415 (15%), Positives = 133/415 (32%), Gaps = 32/415 (7%) Query: 16 NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY---ASLLQVQ 69 D R+ DN AL A +IA ++ + FI+ L ++ Sbjct: 449 RDFRVNDNWALIYAYEMAKKKGLTLIACTCLNRKEKVTN-------RFIHTKLKILKNLE 501 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 SL + I F D+ + +V + + +E K L Sbjct: 502 YSLKKINIPFYMLPLYMIDE----FGEFMKTHQVKIITCDLHVLNDEKAFIKSLSHLCNK 557 Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGP 187 R + D ++P + P +AL+ L++ V ++ P Sbjct: 558 RKVKMFQVDSHNIVPMWVTSKMEECSVRTIKPKIQALLPTFLIEYMSIEPFVQNLKFPEP 617 Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + P F + E+ A +L+ FC + + Y +R+ P S L Sbjct: 618 FDIDEVLNKLSVSNTCAVVPNFVLTEKKAEELLKDFCSKVLDKYNVKRNDPNSDAGSVLL 677 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMG 304 PY+++G++S ++C + + + ++ ++ +E + + + Sbjct: 678 PYVNLGIISSQRCVLEVHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNF 737 Query: 305 KPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + + + + ++ T + + QL G MH L++ A Sbjct: 738 EGGRDWAKESLKKHDADKREYLYDYEDFRSAKTHNDMWNCCQLQLINEGIMHEFLKVYWA 797 Query: 359 SFLVKDLLVDWRIGEEYFMSQ---LLDGDLASNNGGWQW-AASTGNDSVPYFRIF 409 ++ + +DG + W + S IF Sbjct: 798 KKILNWSGNSQTALKYALQLNNELSIDGKTPNGYVSIMWSIMGVHDQSWNEKNIF 852 >gi|213428165|ref|ZP_03360915.1| hypothetical protein SentesTyphi_22875 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 45 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 30/39 (76%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTP 39 >gi|326403400|ref|YP_004283481.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301] gi|325050261|dbj|BAJ80599.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301] Length = 393 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 G TG D+ R++ ++HN RM AS + L + W +G ++F+ LLDGD+A Sbjct: 124 CAGRTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIA 183 Query: 387 SNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQG 422 SN W+W A Y R N G RFDP+G Sbjct: 184 SNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 221 >gi|114765681|ref|ZP_01444780.1| DNA photolyase-like protein [Pelagibaca bermudensis HTCC2601] gi|114542003|gb|EAU45037.1| DNA photolyase-like protein [Roseovarius sp. HTCC2601] Length = 401 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWTEK 313 R+ + + GA ++++E++WR +++ + P V Sbjct: 51 RRLVTEPEVISTAVETHGIDGAGTFVSEVLWRSYFKGWLEQRPQVWNDYRDGLRRDLAAL 110 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 E + G TG +D +L G++HN RM AS + + WR+G Sbjct: 111 DEDADLRDRVARVCAGRTGLAGVDDWAAELVQTGYLHNHARMWFASIWIFTRGLPWRLGA 170 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 ++F+ LLDGD ASN W+W A Y Sbjct: 171 DFFLRHLLDGDPASNTCSWRWVAGLHTRGKHY 202 >gi|213584005|ref|ZP_03365831.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 46 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 25/46 (54%), Positives = 34/46 (73%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHD 46 >gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC 30864] Length = 634 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 63/464 (13%), Positives = 121/464 (26%), Gaps = 62/464 (13%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ D R+ DN AL A + + + F P RQ F+ L + Sbjct: 131 LYWMSRDQRVQDNWALIYAQQLAIQHRVPLFVGFCLVPHFLDAT---IRQYDFMMEGLRE 187 Query: 68 VQKSLSQKGIVFQYHQCSNFD------------------DSIEWLDSYCLQQRVTKLFYN 109 V+ +L I F + + + + + + + Sbjct: 188 VETALRGLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELANSLAQTT 247 Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP-----------------GSILNHAL 152 + +L + + S L A Sbjct: 248 IATTGATQSHTGIPLIQLDAHNVVPCWHASPKLEYAARTIRPKLHKLLSEFLTEFPEVAA 307 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 A + + + P G Sbjct: 308 HPCSARQSPSSPQSARASSAASSNAHFQSGLSAPVDWDAARASLQVNRTITAVPDIVPGT 367 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + LR F ++++ Y+ R+ P + S LSPY G ++P++ Sbjct: 368 RAGMTTLRTFVEQRMRYFGAVRNDPNERVLSNLSPYFHFGQIAPQRAILVAYAAHARCRE 427 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---- 328 L+ RE + + P+ W ++ + Sbjct: 428 SVDVFVEE---ALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAHAGDAREFVYTEEEL 484 Query: 329 --GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYFMSQL-LDG 383 T + +AA ++ G MH +RM A +++ + + LDG Sbjct: 485 ESATTHDLLWNAAQLEMVREGKMHGFMRMYWAKKILEWTASPSEALRIAIHLNDKYNLDG 544 Query: 384 DLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFD 419 + G W+ G + R N ++FD Sbjct: 545 RDPNGYVGCMWSI-CGIHDQGWGERPIFGKIRFMNLKGCQRKFD 587 >gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri] gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS) [Ostreococcus tauri] Length = 297 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 86/293 (29%), Gaps = 5/293 (1%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W+ D R+ DN AL AC + + V IA + G ARQ F+ L +++ Sbjct: 2 YWMSRDQRVDDNWALLRACDLARERGAPVVIAFNLLTKYLGAGARQFGFMLRGLRELEAK 61 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 F +I+ L + + F + + + +L ++ V Sbjct: 62 ARAAKATFAMTYGDEPAAAIDALAKKIGAKTIVCDFSPLRDGVRWRKDLAVLSEKRGAHV 121 Query: 132 ICKSFDDSVLLPPGSILNHALQM--YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + V S ++ + + Sbjct: 122 EECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLKEFPAIPDDLVEYDGPAIDAVKW 181 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPY 248 + + + I + A + E+R+ P+ S LSP+ Sbjct: 182 DDLLAEALKRGEAVPEVTWAIPGETAARAVLDDFVANRMKLYEKRNDPSKPRALSGLSPW 241 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 L G +S ++C K+ F L ++ RE + + P Sbjct: 242 LHFGQISAQRCALEAKKAVGKASPAAYDSFFEEL--VVRRELADNFCYYCPGQ 292 >gi|315500507|ref|YP_004089309.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] gi|315418519|gb|ADU15158.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB 48] Length = 390 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LSPY+ ++ + ++ K +++E+ WR ++R + P+ Sbjct: 41 HVSKLSPYVRHRLIGEWELARAAEKAHGAAASK-------FIDEVCWRSYWRGYLEMRPA 93 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +++ E + + A G TG D +L T G++HN RM AS Sbjct: 94 LWASYVDYLLSDEAETARQTDTYCAAVSGQTGIDAFDVWTAELITTGYLHNHARMSFASI 153 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 V L + W++G +F+ LLDGD A+N W+W A Sbjct: 154 WVHTLRLPWQLGAAFFLEHLLDGDEAANTLSWRWVAG 190 >gi|170782720|ref|YP_001711054.1| putative ATP-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157290|emb|CAQ02475.1| putative ATP-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 408 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 11/179 (6%) Query: 230 YVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 Y R+ + S LSPYL +++ ++ + ++ E+ Sbjct: 24 YARDRNHDLGASRDNVSGLSPYLRHRLVTEQEVVAAVLARHSLSAA------EKFVQEVF 77 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 WR +++ + P + + E++ G +G +DA +R+L Sbjct: 78 WRTYWKGWLEQNPEA--WRRYRRDVEELTAGDLPTGYLDAVGGRSGIDAMDAWVRELVET 135 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G++HN RM AS + L + W++G ++F LLDGD ASN W+W A Y Sbjct: 136 GYLHNHTRMWFASIWIFTLGLPWQLGADFFHRHLLDGDAASNTLSWRWVAGLQTRGKTY 194 >gi|71083003|ref|YP_265722.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062116|gb|AAZ21119.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique HTCC1062] Length = 380 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 1/147 (0%) Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318 N L+ L + ++ E++W +++ + P V I + + K Sbjct: 52 IINELEVINKSLKKFSFANNEKFIQEVLWHVYWKGWLELRPDVW-SDYLIELDKIKKEFK 110 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 ++ +G T + + +L ++HN RM AS + L + W++G E+FM Sbjct: 111 NNQSYLDATEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQ 170 Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPY 405 L DGD ASN GW+W A Y Sbjct: 171 HLYDGDAASNTLGWRWVAGIQTQGKHY 197 >gi|323193108|gb|EFZ78328.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 45 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 M HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H Sbjct: 1 MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45 >gi|304391892|ref|ZP_07373834.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp. R2A130] gi|303296121|gb|EFL90479.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp. R2A130] Length = 408 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 13/208 (6%) Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260 + FP QNAL F E Y R+I S+LSPY+ +++ ++ Sbjct: 4 NNFFPATRQNALKQAENFAPEMGSNYSSNRNIDRGLEGDSTVSKLSPYIRRRLMTEQELA 63 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 E ++ E++WR +++ + P+V E+ + ++ Sbjct: 64 LLALETHGAKASGK------FVQEIVWRTYWKGWLEHRPTVWNDYLQDVADERDRLSSNT 117 Query: 321 HLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 + A++ +G TG D ++L ++HN RM AS V L + W +G E+F Sbjct: 118 GIHHAYQQAIEGRTGIECFDVWAQELVETNYLHNHARMSFASIWVHTLRLPWSLGAEFFF 177 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405 LLDGD ASN W+W A Y Sbjct: 178 HHLLDGDAASNTLSWRWVAGAHTAGKTY 205 >gi|254440134|ref|ZP_05053628.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307] gi|198255580|gb|EDY79894.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307] Length = 384 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK--- 313 R+ + L A ++ E+IWR +++ + P V + Sbjct: 30 RRLLTEAEVVAAALTTHGPDDARVFIEEVIWRGYFKGWLERRPQVWDSYALGLNADLVSL 89 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + L+ + G TG D ++L G++HN RM AS + L + WR+G Sbjct: 90 NRDRRLRRDLELAETGQTGMDYFDTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGA 149 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 ++F LLDGD A+N W+WAA PY Sbjct: 150 DFFYRHLLDGDAAANTLNWRWAAGLHTRGKPY 181 >gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii] Length = 181 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%) Query: 27 YAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 + A HN V+ V+ P + + ++ F+ S+ ++K+L +G Sbjct: 5 FNAAHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGSDLVV 64 Query: 82 HQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 L ++ + Sbjct: 65 R----IGKPETVLVELAKAVGAEAVYAH 88 >gi|225425190|ref|XP_002264876.1| PREDICTED: similar to predicted protein [Vitis vinifera] Length = 467 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447 Q +DP+G ++RHWLPEL VPT++IH P Sbjct: 104 QSSNYDPEGEYVRHWLPELARVPTEWIHHPWDAP 137 >gi|289622018|emb|CBI51196.1| unnamed protein product [Sordaria macrospora] Length = 178 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 27/171 (15%) Query: 8 SVHLVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGI---------- 53 V + LR DLR++DN + + + + +I V++ Q G Sbjct: 5 KVVIYVLRRDLRLSDNPIFHHLANPDSNHGFSHLIPVYVFPAPQIDLSGFLPEGGEIPRP 64 Query: 54 ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-CLQ 100 ++ F+ S+ ++ SL G + +D + Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSNGSDLLVRVGTYTGAVKSLVDGLKAKE 124 Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 V ++ E +K + + I D + Sbjct: 125 CPVGAVWMTSHEGSEEKNDEKAVASFCANSGIDFKLWDDEKYFIHEQVLQN 175 >gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica] Length = 72 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 388 NNGGWQWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 G W W +S+ + + + P KR DP GT+I+ ++PEL VP +IH P Sbjct: 2 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEPWRM 61 Query: 447 LDKND 451 K Sbjct: 62 PLKEQ 66 >gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis] Length = 508 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 63/398 (15%), Positives = 123/398 (30%), Gaps = 22/398 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W+ D R+ DN AL A + + + + + + R F+ L +V Sbjct: 75 LYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLRHYSFLLKGLEEVA 134 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 GI F + + + L + +Q++ + + + + ++K+L Sbjct: 135 AECKALGIQFHLLRGP----AGDLLPGFVSEQQLGAVVTDFSPLREPLTWLEDVKKKLPK 190 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPV 188 V D ++P + + + L L A T Sbjct: 191 DVPLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKHPHAATRTAKP 250 Query: 189 TPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + G L +L F ++ + QR+ P SQLS Sbjct: 251 VDWRELLSSLGVDRTVGETEWARPGAAAGLAMLESFIDVRLKRFDSQRNDPNAAALSQLS 310 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P++ G +S ++ +++ L + S ++ RE + + + Sbjct: 311 PWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEEL---VVRRELTDNFCFYNEKYDSVEG 367 Query: 307 FIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W K + + T + +AA Q+ G MH LRM A Sbjct: 368 AYEWARKTLKDHAKDKRPYIYTREQLEKAETHDKLWNAA--QVVREGKMHGFLRMYWAKK 425 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWA 395 +++ LDG + G W+ Sbjct: 426 ILEWTPSPEEALASALYLNDRYELDGQDPNGFVGCMWS 463 >gi|327342150|gb|AEA50862.1| cry2-1 [Populus tremula] Length = 84 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 S +VW R DLRI DN AL A D V VFI P++ Q ++ S Sbjct: 4 SKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQS--- 57 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97 + G + + + Sbjct: 58 ----FAHSGQSLEISCIETIGATTVAFNHL 83 >gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus] Length = 308 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 7/184 (3%) Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263 +P GE AL L + + K + +R + LSPY G LS R + +L Sbjct: 126 WPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFYFKL 185 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + S +L+WREF+ P + P +I W+++ L Sbjct: 186 TDLYRKVKKNSSPPL-SLYGQLLWREFFYTAATNNPCFDKMES-NPICVQIPWDRNPEAL 243 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382 W +G TGFP IDA M QL GW+H+ R A FL + DL + W G + F LLD Sbjct: 244 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 303 Query: 383 GDLA 386 D + Sbjct: 304 ADWS 307 >gi|254437730|ref|ZP_05051224.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307] gi|198253176|gb|EDY77490.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307] Length = 408 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE---K 313 R+ L A ++ E+IWR +++ + P V + Sbjct: 54 RRLVLEQDAVAAALAAHGPVDAEKFVQEVIWRGYFKGWLERRPQVWASYVTELEADLSAL 113 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + + G TG DA +L G++HN RM AS + L + WR+G Sbjct: 114 DRDRRLRRDVDRAMNGQTGIECFDARAMELVDTGYLHNHARMWFASIWIFTLGLPWRLGA 173 Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 ++F LLDGD ASN GW+WAA PY Sbjct: 174 DFFYRHLLDGDAASNTLGWRWAAGLHTRGKPY 205 >gi|294053665|ref|YP_003547323.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293612998|gb|ADE53153.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 399 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 7/163 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSP++ +L + + E W Y Sbjct: 41 SRLSPWIRTRMLPEWYVISAVLERHSASAASKYIDEVCWR-------TYWKGWLQLRPSI 93 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + + ++ D G TG DA ++L +HN RM AS V Sbjct: 94 WKDYLLARNDLLDQYADHPDYNNAISGQTGIDCFDAWAKELTETNQLHNHARMWYASIWV 153 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 L + W++G ++F+ LLDGD ASN W+W Y Sbjct: 154 HSLKLPWQLGADWFLRHLLDGDPASNTLSWRWVTGLHTRGKSY 196 >gi|123966755|ref|YP_001011836.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515] gi|123201121|gb|ABM72729.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515] Length = 378 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 13/169 (7%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S+LSPY+S +L + +K+++ I W + W+ + + + Sbjct: 39 SKLSPYVSHRILLEYELIEEVKKKYQSQKINKFIEEIYW--RIYWKGWMENRPNVWVDFI 96 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 K F D + G T ++ + +L T ++HN RM AS + Sbjct: 97 SEKNFK---------YDFEAYEKAINGDTDLSFFNSWVNELKTHNYLHNHTRMWFASTWI 147 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 + + W +G +F L DGD ASN W+W A Y F+P Sbjct: 148 FNFGLPWELGANFFFKHLYDGDSASNILSWRWVAGLQTKGKQYL--FSP 194 >gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC 50983] Length = 480 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 73/436 (16%), Positives = 134/436 (30%), Gaps = 36/436 (8%) Query: 22 DNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 DN AL A ++ V+ G RQ F L + K+L KGI Sbjct: 9 DNWALLYAQNLALEGKQPLLVVYNLA---IGYLGGGLRQHVFKVGGLRVLAKNLRDKGIS 65 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---------QH 129 F+ +F ++ + + V F + +RL + Sbjct: 66 FRVDYSKDFPKALSKMVTMLGCSHVVTDFTPLKVNKAWEDAFIKEAERLGIRFDQVDAHN 125 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V C D + +I + + Y+ L ++ D + + + Sbjct: 126 IVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITSEACFDMLL 185 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ-RDIPAIQGTSQLSPY 248 N + + P+ + + + K Q R+ P S LSPY Sbjct: 186 SDNEQQLLAGLDHGVKPVTKVLPGEDAGLEHLYTFIKNMKGYSQFRNDPTKNAISDLSPY 245 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 G++SP++ + + I I RE + + + + F Sbjct: 246 FHYGMVSPQRAVMEVAKA---KSIPKPDRDAFIEEAFIRRELADNFCYYNENYDRFEGFH 302 Query: 309 PWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 W +K + ++ + + T + +A Q+ G MH LRM ++ Sbjct: 303 NWAQKTLQDHEADKRKYVYSLSQLEKASTHDELWNACQNQMLKSGKMHGYLRMYWGKKIL 362 Query: 363 KDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQG--- 415 + + + LDG + G W+ +D R IF Sbjct: 363 EWTENPRQALKFAIYLNDKYELDGRDPNGYVGCAWSIGGIHDQGWAERPIFGKIRYMTYD 422 Query: 416 ---KRFDPQGTFIRHW 428 ++FD Q +I W Sbjct: 423 GCKRKFDIQ-KYINKW 437 >gi|84516926|ref|ZP_01004284.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53] gi|84509394|gb|EAQ05853.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53] Length = 400 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 9/175 (5%) Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 R+ I S LSPY+ +++ + A ++ E+ WR +++ Sbjct: 28 RNHDDIAHVSALSPYIRHRIITEADVLRAVLARHS------PQAAEKFVQEVFWRTYWKG 81 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMH 350 + P+V + + L W G TG D RQL G++H Sbjct: 82 WLELRPTVWANYQRDLAAAMNQIQTQAGLRAQWETACLGQTGIDGFDHWARQLADTGYLH 141 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 N RM AS + L + W +G ++F+ LLDGD ASN W+W Y Sbjct: 142 NHARMWFASIWIHTLKLPWVLGADFFLRHLLDGDAASNTLSWRWVGGIQTQGKAY 196 >gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana] Length = 546 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 73/492 (14%), Positives = 132/492 (26%), Gaps = 76/492 (15%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R DN AL A + + F AR F+ L Sbjct: 42 VYWMSRDQRSRDNWALLYAAQCAQQQGGPLCVAFNLVDSFL---HAEARHFGFMLRGLRV 98 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +LS GI F + + E + ++ + + L + + + K + Sbjct: 99 VHHNLSSLGIPFFLLR----GKAEENIPAFVERCGASILVMDFSPLRIGRVWREGVCKAV 154 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTG 186 V D ++P + + + + + LV+ P+ L Sbjct: 155 PSSVSVFEVDAHNVVPVWVASDKQEYAARTIRGKIQRHLPEYLVEYPPLVAPIHTWTLEK 214 Query: 187 PVTPSNIP---------------------------------------RFFDYPFQAIDPM 207 P R +Y DP Sbjct: 215 PANIDWDLLIDEVAKKGAEGLEVKWCESREDAAMELLLGKKKGFLTTRIRNYADDRNDPS 274 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCW--N 261 P G L K ++ R + S + LSP Q Sbjct: 275 KPAGLSGLSPYLHYGQVLKKKGFLTTRIRNYADDRNDPSKPAGLSGLSPYLHYGQVLAQR 334 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 E K+ +I RE + + P+ + W S Sbjct: 335 CALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYDSLQGAYEWARSTLLAHASD 394 Query: 322 LLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 + +G T + +A+ ++ +G MH +RM A +++ Sbjct: 395 KREHLYTQEELEKGKTHDELWNASQLEMVHLGKMHGFMRMYWAKKILEWTGGPEEALAVA 454 Query: 376 FM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQG-- 422 LDG + G W+ G + R N ++F+ G Sbjct: 455 IYLNDKYELDGRDPNGYVGCMWSI-CGIHDQGWQERPVFGKIRYMNYNGCKRKFNVDGYI 513 Query: 423 TFIRHWLPELNN 434 +++ + EL Sbjct: 514 QYVKRMVAELKR 525 >gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus] Length = 367 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 52/360 (14%), Positives = 105/360 (29%), Gaps = 16/360 (4%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 A + + F P R +F+ L +V + L I F Sbjct: 2 ALKQ-EVPLHVCFCLVPRFLEGT---IRHFNFVLEGLKEVSQELHLLDIPFHLL----IG 53 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + L + + + + + K +++ L + D ++P Sbjct: 54 YAKDVLPGFINDHGLGGVVTDFSPLRTSRQWIKDVKEELPKNIPFCQVDAHNVVPCWEAS 113 Query: 149 NHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP- 206 N + P + L + + Q + P Sbjct: 114 NKLEYGARTIRPKITKQLTTYLTEFPPVICHPHKAKAKAEPIDWEGAYASLEVDQTVKPV 173 Query: 207 -MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 G + +L F KE++ Y+ R+ P S LSP++ G LS ++ ++ Sbjct: 174 DWAQPGTSEGMKMLDSFVKERLRYFSSARNDPTKSVCSNLSPWIHFGQLSSQRAALIVRL 233 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + + Y S+ + T K + + Sbjct: 234 YRSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDHAKDKREYVYS 293 Query: 326 W---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 ++ T + ++A +Q+ G MH LRM A +++ E L D Sbjct: 294 RETLERAKTHDQLWNSAQKQMVREGKMHGFLRMYWAKKILEWTTSPEEALE--IAIYLND 351 >gi|254456085|ref|ZP_05069514.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083087|gb|EDZ60513.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] Length = 379 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 7/163 (4%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S LSPY++ G++S + ++ ++F ++ E++WR +++ + P+V Sbjct: 42 SCLSPYITHGIISELEVIDKSLKKFSFTKN------EKFIQEVLWRVYWKGWLELRPNVW 95 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + E+ + L A +G T + + +L ++HN RM AS + Sbjct: 96 SDFLMELNNLRNEFKDKQNYLDA-IEGKTDLECFNQWVNELKENNYLHNHTRMWFASIWI 154 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 L + W++G E+FM L DGD ASN GW+W A Y Sbjct: 155 FTLELPWQLGAEFFMKHLYDGDAASNTLGWRWVAGIQTQGKHY 197 >gi|310658527|ref|YP_003936248.1| deoxyribodipyrimidine photo-lyase [Clostridium sticklandii DSM 519] gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) [Clostridium sticklandii] Length = 447 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 56/399 (14%), Positives = 118/399 (29%), Gaps = 22/399 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ R N AL + S+ + + + + R F+ + V Sbjct: 22 LYWMQASQRSEYNHALEYSIEYSNKLKLPLIVLFIIMEDFPKANFRHFRFMLEGIEDVMN 81 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRLQH 129 L + I + +++ ++ + F ++EI Sbjct: 82 QLKSRKIKMVIRK----GEALPIVNELSKNASILITDFGYLKHEIIMKSNIAQQLNCSML 137 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 V + K+ K LI+ + ++S I+ Sbjct: 138 SVESNVIIPVEVTSNKEEYGAYTIRPKINKIIDKYLIELNSRLVMQSSIDYPIKSEDISD 197 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 ++ + ++ G A L+ F + K YY E ++ P + +S LSPYL Sbjct: 198 LNSFIDSLKIDKSINESIYKGGSVEAEKYLKDFIENKAQYYSELKNHPGMNYSSNLSPYL 257 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 G +SP ++ + + + RE + + + + I Sbjct: 258 HFGQISPLYIALKIIKSDIKSKK------DFLEELITRRELAINYIYYNKNYDSDIEKIL 311 Query: 310 WTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + T + A +++ G MH +RM + Sbjct: 312 PSWAYDSLISHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMVITGKMHGYMRMYWGKKI 371 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 ++ L + +DG A+ G W Sbjct: 372 IEWSLTINDAFSKALYLNDRYSIDGRDANGYAGIAWCYG 410 >gi|307108702|gb|EFN56941.1| hypothetical protein CHLNCDRAFT_143484 [Chlorella variabilis] Length = 798 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 18/140 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAK--------------VIAVFIATPEQWRQHGISAR 56 L+W + DLR+ D+ +AA + A V+ VF P ++ + Sbjct: 33 LLWYKRDLRLDDHPGWHAAAAAAAAAAAAAADAAAGAPRGVVPVFCFDPARYAHLVLPRG 92 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + + +L + +SL Q G E L + + ++ E + Sbjct: 93 GAEALCRALASLDRSLRQHGSRLVVR----VGAWEEQLPLLAAELGAAGVVAEQEVEADW 148 Query: 117 VRRDKLLEKRLQHRVICKSF 136 + + + L V + Sbjct: 149 RQGVERVAAALPGGVAVHHW 168 >gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150] Length = 407 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 10/214 (4%) Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 +P G + S LSP++ +++ + + Sbjct: 10 FEPTRSAGIVRMEQFAIRTGAHYASKRNYDLGANNRSTVSALSPWIRHRLITEEEVLTQT 69 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + ++ E+ WR +++ + +PSV T + + ++ L Sbjct: 70 LARYSPSTAMK------FIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAELN 123 Query: 324 QAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +G TG D R+L G++HN RM AS + L + W +G ++F++ L Sbjct: 124 ADYIGAIEGRTGIACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNHL 183 Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTI 413 +DGD ASN W+W Y R N Sbjct: 184 IDGDSASNTLSWRWVGGLHTKGKTYLARQDNIAK 217 >gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella] Length = 166 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 + LSPYL G LS R + RL + + + S +L+WREF+ P Sbjct: 16 PTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPL-SLFGQLLWREFFYTAATNNPRF 74 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + P +I W+++ L W +G TGFP IDA M QL GW+H+ R A FL Sbjct: 75 DRME-GNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 133 Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393 + DL V W G F LLD D + N G W Sbjct: 134 TRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166 >gi|146337586|ref|YP_001202634.1| putative deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] gi|146190392|emb|CAL74388.1| putative Deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278] Length = 406 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 14/172 (8%) Query: 233 QRDIPAIQGTSQ----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 R+ G Q LSP++ +++ + + A ++ E+IWR Sbjct: 31 GRNHDHGPGRPQAVSGLSPWIRRRLVTEEEVVRA-------AVAAHGGAADKFVEEVIWR 83 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345 +++ + P V + + D + A + G TG DA ++L Sbjct: 84 GYFKGWLERRPQVWTSYLRGRDADLERLDSDGALQARVAAAEAGRTGLACFDAFAQELVA 143 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 G +HN RM AS + L + WR+G ++F+ LLDGD ASN GW+W A Sbjct: 144 TGMLHNHARMWFASLWIFTLGLPWRLGADFFLRHLLDGDPASNTLGWRWVAG 195 >gi|258611843|ref|ZP_05711678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL R2-503] gi|258606567|gb|EEW19175.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL R2-503] Length = 164 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 ++W R DLR+ DNKALY AC D ++ +F P Q+ S F +AS+ Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFITG--SPSHQGF-FASVAHF 56 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ + + H F + IE K+++NR +RD+ + Sbjct: 57 KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 + I L + + Y + + Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTLIIKMARR 152 >gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites] gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii] Length = 174 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 29 ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 A HN V+AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59 Query: 84 CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 60 ---IGKPETVLVELAKAVGAEAVYAHREVSH 87 >gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides] Length = 173 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 29 ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 A HN V+AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59 Query: 84 CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 60 ---IGKPETVLVELAKAVGAEAVYAHREVSH 87 >gi|254449813|ref|ZP_05063250.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198264219|gb|EDY88489.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 405 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 9/171 (5%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S LSPY+ +L R+ A +++ E++WR +++ + Sbjct: 38 QHTAVSVLSPYICRRLLCEREVVAAALAVHG------PDDARAFIEEVVWRGYFKGWLER 91 Query: 298 YPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 P V + + ++ + G +G D +L G++HN R Sbjct: 92 RPQVWASYVSGLNADLESLKRDRQLRRDVELAETGQSGLGYFDTWAHELVNTGYLHNHAR 151 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 M AS + L + WR+G ++F LLDGD A+N W+WAA PY Sbjct: 152 MWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPY 202 >gi|82548258|gb|ABB82949.1| putative DNA deoxyribodipyrimidine photolyase [uncultured organism HF70_19B12] Length = 738 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 61/418 (14%), Positives = 117/418 (27%), Gaps = 29/418 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+R LR+ +N A + + + I R S R F+ V Sbjct: 28 IHWMRAALRLDENPTFDVARTIAKNLSLPLLIYQGIDERYPYASYRHHRFLIEGAADVAH 87 Query: 71 SLSQKGIV--FQYHQCSNFDDSIEWLDS----YCLQQRVTKLFYNRQYEINEVRRDKLLE 124 +Q G+ + + + +++++ + N + +R ++ Sbjct: 88 RANQIGVKYLLHVSRDGHREPNLQYIAQEAAVVVTDLVDLSPWSNWTESVARIRPVIEVD 147 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---A 181 ++ P + Sbjct: 148 AHCVLPRPVFGRTFDRPFRFRDATKREMKRRMAQPWPSTNHEITSFPDTWTPPFTPVDAS 207 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 + L S + P G A+ F E + Y R+ A + Sbjct: 208 LELRKDGAQSLLAACQIDPTVVPVTDMIGGASVAMTRWNNFLSEGLSRYHRTRNNAAKRG 267 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 G S +SP+L G+++ + L++RE H + Sbjct: 268 GVSGMSPWLHHGMIAATRLVRDAANSPTKGA------QKFLDEMLVFREHAYHHAHEVDN 321 Query: 301 VCMGKPFIPW-TEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + W E + W ++G T P+ +AA + G MHN +RM Sbjct: 322 PLEWRHLPGWARESWQNTCLVKYPLLWMDLERGNTDDPLWNAAQTGIVRHGVMHNNVRMT 381 Query: 357 TASFLVKDLLVDWRI---GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411 V+ + +E LDG ++ G W + R F+P Sbjct: 382 WGKGTVRWVDDPEEAMSFTQELNDRYALDGRNPNSIAGVMWCYGL------FDRPFDP 433 >gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1] gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1] Length = 511 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 117/373 (31%), Gaps = 25/373 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIA-----------TPEQ---WRQHGI 53 + W++ D+R DN AL A D + V+ + Q + Sbjct: 23 VYWMQRDVRSVDNWALLWARDLAMQHDVPLHVVYALPPPASSDGSDNDRDLPPALIQLPM 82 Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQY 112 + R F+ L V K L + I + + E ++ + + + + Sbjct: 83 TKRHGAFLLGGLECVYKELKEMKIPLYVCLPDSHEKVGETVCEAILHKYKAKIVVSDFSP 142 Query: 113 EINEVRRD--KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + + + + +V D ++P + + + P + + + Sbjct: 143 IREYRQWMELQAVPILEEAKVPFYQVDAHNIVPVWTATDKRQVGARTLRPRIHKVYNDYL 202 Query: 171 Q--ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 Q DL+ + D +++D P E Sbjct: 203 QDYPDLKGNSHSVDQPKFDRVEYESFLQMDESVESVDWAQPGTEAGMKQFEFFSKNGLKI 262 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 ++ ++ D S +SP+++ G +S ++ +K + + Sbjct: 263 FHEQRNDPVQKHVCSDMSPWINHGHISFQRLALNVKALNKHANGAAAFIEEGVIRRELSD 322 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNT 345 + Y S+ + + ++ + + + + ++G T + +AA Q+ Sbjct: 323 NMLYYSPNDYDSLETAAGWARESLQLHASDEREFVYSLSELEEGRTHDDLWNAAQLQMVR 382 Query: 346 IGWMHNRLRMITA 358 G MH +RM A Sbjct: 383 DGKMHGFMRMYWA 395 >gi|330814279|ref|YP_004358518.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487374|gb|AEA81779.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 382 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 2/148 (1%) Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 + + + P ++ E+ WR +++ + P V + + + Sbjct: 48 RIIDEQETIRSAYSKLPFKKIEKFVQEVFWRTYWKGWLEMRPQV--WDDYNHDLKNLHNE 105 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 S + +G T ++ + +L G++HN RM AS + L + W++G +F+ Sbjct: 106 LTSSNYKEAIEGNTKISCLNDWVLELKEFGYLHNHARMWFASIWIFTLGLPWQLGANFFL 165 Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405 LLDGD ASN GW+W A Y Sbjct: 166 KHLLDGDPASNTLGWRWVAGLHTKGKHY 193 >gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense Az-Fu1] Length = 452 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 75/427 (17%), Positives = 149/427 (34%), Gaps = 35/427 (8%) Query: 14 LRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 LR D N +L A ++ +++ FI + + R F+ +L+ + Sbjct: 29 LREDF----NFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTK 80 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 K++ ++GI F + + +++ ++ + + + Sbjct: 81 KAIEERGIKFVIQKDDYVNGTLKLSKEAVCIVLDKNYLKTQRKWRENIAKASQVAVYQLE 140 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + P + ++ KV F K + + ++ + + L V ++ P Sbjct: 141 NDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFKTPDE 200 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 +I +D F G A L++F ++K+Y Y E R P+ TS LSPYL Sbjct: 201 FLSILNIDKT-VSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNLSPYL 259 Query: 250 SIGVLSPRQCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MGKP 306 G +SP + + + + D + EL + + + Sbjct: 260 HFGQISPLKIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCWYNPLYNQYEGIPQWAR 319 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 K + + LQ +++ T P +AA ++L G +HN +RM A +++ Sbjct: 320 QTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWAKKIIEWTE 379 Query: 367 VDWRIGEEYFMSQLLD------GDLASNNGGWQWAASTGNDSVPY--------FRIFNPT 412 + + L D D + GG W G P+ R N Sbjct: 380 DPKQAFD--IACYLNDKYALDGRDP-NGYGGISW--CFGTFDRPWQERKVFGKIRYMNDK 434 Query: 413 IQGKRFD 419 ++FD Sbjct: 435 GLERKFD 441 >gi|124026272|ref|YP_001015388.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A] gi|123961340|gb|ABM76123.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A] Length = 371 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 5/170 (2%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + ++ +S L E + +K + +E++WR +++ + Sbjct: 23 HQLRNYDYGIEDRTNVSQISKYTSHRILYEFDIIEKLKKYDKKQKYTDEILWRIYWKGYL 82 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 Y S+ + E + +S+L+ + G TG D + +L ++HN RM Sbjct: 83 ENYKSIWF-----EYINFKENSNNSYLISSAINGKTGIDCFDTWIEELRENNYLHNHARM 137 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 AS + L + W++G FM LLDGD ASN W+W A + PY Sbjct: 138 WFASIWIFTLGLPWQLGARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187 >gi|126696885|ref|YP_001091771.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543928|gb|ABO18170.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301] Length = 382 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 15/194 (7%) Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 + F K K+ Y + R+ +LSP+++ +LS + + +K ++ Sbjct: 8 QNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYELIHDIKSKYKIKN 67 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 E + + K + + + + D L ++ G T Sbjct: 68 STKF-----------VEEIFWRVYWKGWMENRPKVWRNFISENNLDFDYELYESAINGNT 116 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 ++ + +L ++HN RM AS + +L + W++G ++F L DGD +SN Sbjct: 117 ELDYFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLLS 176 Query: 392 WQWAASTGNDSVPY 405 W+W Y Sbjct: 177 WRWVGGLQTKGKQY 190 >gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255] Length = 418 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 11/234 (4%) Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 D +A P G + + S LSP++ ++ Sbjct: 10 DHIDKFNEAFIPTREAGLKRLKEFAPLAGEIYSNKRNFDFSSIEKNSVSALSPWIKHRLI 69 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP---FIPWT 311 + L + A ++ E+ WR +++ + +P+V + Sbjct: 70 ------TEEEVIIEILKYHNQHSAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYA 123 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + + G TG D QL + G++HN +RM AS V L + + Sbjct: 124 KLENNRFVKESYMSAVNGETGIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMEL 183 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTIQGK-RFDPQGT 423 G ++FM L+D D ASN W+W + Y R N +F+P G Sbjct: 184 GADFFMLHLIDADAASNTLSWRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQ 237 >gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae] gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae] Length = 426 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 56/424 (13%), Positives = 121/424 (28%), Gaps = 28/424 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 W+ D R+ DN AL A + + +++ + + R F+ L +V+K Sbjct: 16 YWMSRDQRVQDNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGFMLKGLEEVEK- 74 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 S +L + ++ + + + ++ L +L V Sbjct: 75 -----------FPSPDWLCCGFLPGFVDEKNIGGVVTDFSPLRTPLKWVHDLAGKLPSDV 123 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 D ++P + + + + P P Sbjct: 124 PFVQVDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPPKDKPEPTD 183 Query: 192 NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 G L +L FCK+++ + R+ P + S LSP+ Sbjct: 184 WAAARASLKVDMTVAEVTWATPGTTGGLRMLESFCKQRLKNFGTDRNNPNKRALSNLSPW 243 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM----G 304 + G +S ++C +K+ + + + + Sbjct: 244 IHFGQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFYNHDKYDSIKGASAW 303 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + + +Q T + +AA L+ N L + + + Sbjct: 304 AQKTLKDHAGDKREYLYSREQLEQAKTHDDLWNAAQV-LDINFSCANLLSIWEVQYSIDK 362 Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424 +D R Y ++ GW A F +N ++FD F Sbjct: 363 YSLDGRDPNGYVGCMW--SICGIHDQGW---AERPVFGKIRFMNYNGCK--RKFD-VAQF 414 Query: 425 IRHW 428 + + Sbjct: 415 VTKY 418 >gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii] Length = 173 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 29 ACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 A HN V+AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 1 AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR- 59 Query: 84 CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 60 ---IGKPETVLVELAKAVGAEAVYAHREVSH 87 >gi|162606050|ref|XP_001713540.1| hypothetical protein GTHECHR1043 [Guillardia theta] gi|13794460|gb|AAK39835.1|AF165818_43 hypothetical protein [Guillardia theta] Length = 272 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 ++W R DLRI DNK L ++ V+ + + S ++ F+ S+ ++ Sbjct: 68 ILWFRYDLRINDNK-LIELLKTNNNDYYLVYCFDKNEIK--NYSKKKLTFLKQSVETLRD 124 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109 +L + + DSI + + +TK+ Y+ Sbjct: 125 NLRKLEYNLMIME----GDSISVFKNLKEKFLITKISYS 159 >gi|218198693|gb|EEC81120.1| hypothetical protein OsI_23997 [Oryza sativa Indica Group] Length = 133 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 46/70 (65%) Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 + +P+IDA M++L G+M NR R I SFLV+D+ +DWR+G E+F + LLD D AS Sbjct: 64 EDEARYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPAS 123 Query: 388 NNGGWQWAAS 397 N G W + A Sbjct: 124 NYGNWTYGAG 133 >gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus DSM 2926] gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus DSM 2926] Length = 459 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 64/440 (14%), Positives = 132/440 (30%), Gaps = 28/440 (6%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R N L ++ +I +F + R F+ L Sbjct: 21 LYWMQGSQRTRYNHCLEYGVLKANEMKKPLIVIFNL---IDGYPDANERHYSFMLEGLKD 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+K+L + I F + ++ K + N Q + K+ + + Sbjct: 78 VKKALFARKIEFYISHGDMAKNIVKA-SEKASILICDKGYMNIQKKWRAEISSKVKCQAV 136 Query: 128 QHRV----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + +I + + + + ++ ++ + Sbjct: 137 EIDTNLVVPVEEASQKEEYAARTIREKIKRQLDEFLYDFEKIKYSVNKSYNKKFCFYENN 196 Query: 184 LTGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 L + + F GE A L +F + K+ Y + P Sbjct: 197 LNKDLDNVGKVLDNMKLNRSVSKSSFFYGGEIEAEKRLDEFIEIKLESYSYKNSDPGEDN 256 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFY 298 S+LSPYL G +SP + L + + + EL Y + Sbjct: 257 VSKLSPYLHFGNISPVEIALELLKMKNETNSESIEAFLEELIIRRELSHNFIYYNERYDK 316 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 EK +K ++ + ++ T +AA +++ G+MH +RM Sbjct: 317 WDGISYSWAYETLEKHRSDKRENIYSLEKLEKYKTHDIYWNAAQKEMVVTGFMHGYMRMY 376 Query: 357 TASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYFR 407 +++ E LDG ++ G W + + R Sbjct: 377 WCKKILEWSKTPEEAYERTIYLNNKYFLDGRDPNSYTGVAWCFGKHDRAWKERSIFGKIR 436 Query: 408 IFNPTIQGKRFDPQGTFIRH 427 N ++FD +++ Sbjct: 437 YMNSEGLKRKFDMD-KYVKK 455 >gi|15636683|gb|AAL02137.1| deoxyribodipyrimidine photo-lyase [Branchiostoma belcheri] Length = 202 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN AL A + F P+ S R F+ L + Sbjct: 122 VYWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLE---ASIRHYGFMLKGLEE 178 Query: 68 VQKSLSQKGIVFQYHQCSNFD 88 V++ L I F D Sbjct: 179 VERELQSLDISFHLLTGYAVD 199 >gi|212543459|ref|XP_002151884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium marneffei ATCC 18224] gi|210066791|gb|EEA20884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium marneffei ATCC 18224] Length = 452 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 17/104 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W + DLR+ DN+AL A + + V + F +L + Sbjct: 328 LHWFKGDLRLKDNRALTMASELAAKNNIVRC---------------PARVDFTLRNLKVL 372 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 Q+ L I + + C + + LF N +Y Sbjct: 373 QQKLDNLDIPLYMETQEQRRNVPGRIAELCERWGASHLFANIEY 416 >gi|85374772|ref|YP_458834.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594] gi|84787855|gb|ABC64037.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594] Length = 407 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 D P SQLSP+L G+L + E + NE+ WR +++ Sbjct: 33 DGPGRGNVSQLSPWLHTGLLREHEVLEATLREHGARAA------EKFGNEIFWRVYFKGY 86 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHN 351 + PS+ T ++++ A+ +G TG D ++L G++HN Sbjct: 87 LEQRPSIWRSYCQQRDTALTALDRNAGDRTAYEEATEGRTGIGAFDYWAQELIETGYLHN 146 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 RM AS + L +DW +G ++F+ L+DGD ASN W+W Sbjct: 147 HARMWFASIWIFTLKLDWTLGADFFLRHLVDGDAASNTLSWRWVGG 192 >gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans DSM 12260] Length = 464 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 106/358 (29%), Gaps = 21/358 (5%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R D+ L AA + + +F +P R F+ L + Sbjct: 32 LYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFLGAP---LRAYAFLLRGLRE 88 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + L+ + I + D E + ++ RV + + +R Sbjct: 89 TARELAARDIPLFLLR----GDPPEEAARFAIRHRVALTVTDFDPLRVRRGWTEAFLERT 144 Query: 128 QHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + V S + + + L + PVP Sbjct: 145 EGTALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFLPFLPPPLETHPVPWTDTPP 204 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 P + P G L F +E + Y R+ P +G S LS Sbjct: 205 PSWDPLDLLASGSFEGVPESPLPPGSAAGQARLEAFLREGLPRYARDRNDPLREGQSGLS 264 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL G +SP++ + + + E + P + Sbjct: 265 PYLHFGQISPQRAAWEVLRADAPPEDREAFLEELVVRG----ELAENFCLHTPGYDTVEA 320 Query: 307 FIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 F W K S A +G T P+ +AA R+L G M LRM Sbjct: 321 FPDWARKTLAAHASDRRPALYSLRELEEGRTHDPLWNAAQRELVLTGRMPGYLRMYWG 378 >gi|89055300|ref|YP_510751.1| deoxyribodipyrimidine photo-lyase family protein [Jannaschia sp. CCS1] gi|88864849|gb|ABD55726.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Jannaschia sp. CCS1] Length = 403 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%) Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + + + + D + + G T +A R+L G++HN Sbjct: 81 CWRTYWKGWLELRPSAWAEYRRDLDHIDRTGVAKAEAGQTDIDAFNAWTRELVETGYLHN 140 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 RM AS + L + W+ G ++FM LLDGD ASN W+W A Y Sbjct: 141 HARMWFASIWIFTLGLPWQAGADFFMRHLLDGDPASNTLSWRWVAGLQTHGKHYV 195 >gi|72382567|ref|YP_291922.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A] gi|72002417|gb|AAZ58219.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A] Length = 371 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%) Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 + Q + + + E + + + Sbjct: 34 NRTNVSQISKYTSHRILYEFDIIEKLKKYDKKQKYTDEILWRIYWKGYLENYKSIWFEYI 93 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 E + +S+L+ + G TG D + +L ++HN RM AS + L + W++ Sbjct: 94 NFKENSNNSYLISSAMNGKTGIDCFDTWIEELKENNYLHNHARMWFASIWIFTLGLPWQL 153 Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 G FM LLDGD ASN W+W A + PY Sbjct: 154 GARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187 >gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis] Length = 726 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 13/169 (7%) Query: 26 LYAACHNSDAKVIAVFIATPEQWR------QHGISARQSHFIYASLLQVQKSLSQKGIVF 79 L+ + ++ ++ P + + F+ S+ ++K+L +G Sbjct: 543 LFYWAQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNL 602 Query: 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN---EVRRDKLLEKRLQHRVICKSF 136 + E + S Q ++ + V + + + Sbjct: 603 IVRR----GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCW 658 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ +H ++ VYT FRKA+ + P L Sbjct: 659 GSTLYHRDDLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLP 707 >gi|147827517|emb|CAN66342.1| hypothetical protein VITISV_024326 [Vitis vinifera] Length = 1716 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 SV ++W ++DLRI D+ L AA VI +++ + G + F Sbjct: 954 SVAVLWFKHDLRIDDHPGLVAAASRH-RTVIPLYVFDRRILSRDGK---RVKFWKD 1005 >gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2] Length = 487 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 72/412 (17%), Positives = 115/412 (27%), Gaps = 36/412 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W++ LR DN + AA + + V + + S R HFI + +Q+ Sbjct: 30 LCWIQQTLRSDDNPLIDAAIDLGNRLGLPVLVYHGLREDYPHASDRLHHFILRASRDLQR 89 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 ++G + D + + T + V R + + Sbjct: 90 ECVRRG----LRCVTFVDQAQTREKGLVYRLAATAAAVLTDDQPVFVARQQADNFAARCD 145 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR------- 183 + D + L+P + Q V + PA Sbjct: 146 RAVFAVDTARLVPTRVLPAGLKTTPAFRKASGALRPQYEVHRNNFVPDCPAYTGDVCFKD 205 Query: 184 ------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237 + D+ P + Y + + Sbjct: 206 ANLAQASNTALNDLMAHCDIDHSLPPAPDFEPSAAAARSALDGFVTDALATYPYRRNNAA 265 Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 G S+LSPYL GVL PR+ ++ V K K L WRE++ +L Sbjct: 266 DKAGVSRLSPYLHFGVLGPRKMTAAVRAADVTANAKWKYLDEL----LTWREYFHYLAYQ 321 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHN 351 + + S G TG +AA RQ G+MHN Sbjct: 322 DDNFASFRSLPDAPRTSLEAHSSDPRPTLYALTDLVHGNTGDETWNAAQRQWLATGYMHN 381 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD------GDLASNNGGWQWAAS 397 LRM ++K L D D A+ G +W Sbjct: 382 NLRMYWGKQIIKWT--PDPETAWDTACYLNDRLALDGRDPAT-YGNMKWVFG 430 >gi|254527101|ref|ZP_05139153.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] gi|221538525|gb|EEE40978.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9202] Length = 384 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%) Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E + + K + + + N D L + G T ++ + +L + Sbjct: 74 EIFWRVYWKGWMENRPKVWENFISEKNLNFDYELYKKAINGNTEIDFFNSWVLELKQHNY 133 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +HN RM AS + +L + W++G ++F L DGD ASN W+W Y Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLSWRWVGGLQTKGKQY 190 >gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens DSM 19672] gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens DSM 19672] Length = 444 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 68/433 (15%), Positives = 132/433 (30%), Gaps = 37/433 (8%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R+ N +L A + D + + + + + R F +L+ Sbjct: 21 LYWMQGAFRVEYNHSLEFAKYLALSKDLPLKVLVVVD---FNYKDANYRHFKFFIDGILE 77 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + I F E + Y + +VR + + + Sbjct: 78 LIDKFKDLKISFHV----KIGSFKEIVPQYSKNADTLITDKAYIKWLKDVRNEIYNKNDI 133 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + V A + ++ + + V D + + Sbjct: 134 TIYEVDTNLMVPVQAASPKCEYGAYTIRPKIHKLKEKFLNDFVVFDYKGRSYE---VEND 190 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + NI F GE A +LR F EK ++ E+R P++ S LS Sbjct: 191 LNGLNIDDKLKSVHYLKPVDFIGGESKADKLLRDFLNEKYLFFAEKRGDPSLDVESNLSF 250 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 YL G +SP + + D + ++ RE + + ++ F Sbjct: 251 YLHFGFISPIKILKEAIKIDTDPKNY----ETLFEQLVVRRELAHNFTYYCDNISDLFSF 306 Query: 308 IPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +P + ++ + + T +AA +L G +HN +RM Sbjct: 307 LPNWAVKTVIEHKDDIRKYLYKLEDLENFKTHDKFWNAAQYELIHKGKIHNYMRMYWGKK 366 Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF-------- 409 +++ + LDG + G W + + +IF Sbjct: 367 VIEWTESFEDAYKILIYLNDKYALDGRDPNGYAGIAWCFGMHDRAFQERKIFGKVRYMSE 426 Query: 410 NPTIQGKRFDPQG 422 N Q +FD G Sbjct: 427 NGLKQ--KFDMDG 437 >gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545] Length = 431 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 128/399 (32%), Gaps = 19/399 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L+W+++ R + N+AL AC ++ V+AVF + G AR F+Y L + Sbjct: 5 LLWVQSAQRASHNEALELACARANVHGVPVVAVF-GGTAGFPGGGSGARHLRFMYEGLCE 63 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L++ +G+ D I + +V Sbjct: 64 LEDALARTRGVRLLGFAGEVPDVVIAASRRAVEVVTDAGYTRTLRRWREKVAGGVQCATT 123 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + A K++ + L A Sbjct: 124 EVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALAASGAEEALE 183 Query: 187 PVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 V + F P GE A L F ++ Y +R+ P + S L Sbjct: 184 LVGGAAAMAAFPRLPVPPCPGYHAGGEAEAHRKLEVFLSRRLDDYASKRNDPGLGLQSHL 243 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SP++ G +S R E +S +I RE + + P Sbjct: 244 SPHIHYGQISVVYVTRRALEVKRRDPRHARSVDVFLDELVIRRELAINFVLNNPKYDSYD 303 Query: 306 PFIPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 W + + W ++G T + +AA R+L T G HN +RM A Sbjct: 304 GLPRWARITLADHAGD-ARRWSYTREEFERGLTHDALWNAAQRELLTSGKQHNYVRMYWA 362 Query: 359 SFLVKDLL---VDWRIGEEYFMSQLLDG-DLASNNG-GW 392 +++ WR+ E LDG D +S G GW Sbjct: 363 KKILEWSEDPAEAWRVAIELNNKYSLDGRDPSSYTGVGW 401 >gi|33861916|ref|NP_893477.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640284|emb|CAE19819.1| similar to DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 379 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%) Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E Y + K + + + + D + G + ++ + +L T + Sbjct: 74 EIYWRIYWQGWMENRPKVWCNFISENNYEYDIETYEKAINGNSELGFFNSWVNELKTYNY 133 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +HN RM AS + +L + W++G +F L DGD ASN W+W A Y Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGASFFFKHLYDGDAASNLLSWRWVAGLQTKGKQY 190 >gi|78779842|ref|YP_397954.1| deoxyribodipyrimidine photo-lyase family protein [Prochlorococcus marinus str. MIT 9312] gi|78713341|gb|ABB50518.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) [Prochlorococcus marinus str. MIT 9312] Length = 384 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 15/194 (7%) Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 ++ F K K+ Y + R+ +LSP+++ +LS N +K ++ Sbjct: 8 QNVWDNFAKYKINDYSKLRNFDFGPNNEGSVSKLSPFITHRILSEYDLINDIKSKYKIKN 67 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 ++ E+ WR +++ M P V + D L + G T Sbjct: 68 S------TKFVEEIFWRVYWKGWMENRPKVWQYFTLEKNLDF-----DYELYENAISGNT 116 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 ++ + +L ++HN RM AS + +L + W++G ++F L DGD ASN Sbjct: 117 ELDFFNSWVLELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLS 176 Query: 392 WQWAASTGNDSVPY 405 W+W A Y Sbjct: 177 WRWVAGLQTKGKRY 190 >gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis] gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis] Length = 667 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 76/413 (18%), Positives = 130/413 (31%), Gaps = 36/413 (8%) Query: 11 LVWLRNDLRITDNKAL---YAACHNSDAKV-IAVFIATPEQWRQHGISARQSHFIYASLL 66 L W++ +R +N AL AA + IA F+ + Q I+ R+ F+ L Sbjct: 226 LYWMKTAVRGHENPALDTARAAAERLQLPLRIAAFV---QPTCQPYINHRRVKFLLEGLR 282 Query: 67 QVQKSLSQKGIVFQYH----QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 Q+ L +G+ H C+ E + + N Sbjct: 283 DAQRELRNQGLDLLVHVYGTTCAGLGPGDEVRSDGSGRGGCPEYDNNDDGGGGGQGGLGR 342 Query: 123 L------EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + L ++ +++D + + ++ +Y Q R+ Sbjct: 343 VEVSGPGWEALLAALVGRAYDKAHAYRSATEALRRHRLRAMYGTSAFPSAQMSPSPPQRT 402 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 A TP + A + + + V++ Sbjct: 403 SRAAAPGPAPADTPRGRLFLKEDEAAAAAAAHTNKFKQGGSCPIRVYANVQMWSVQR--- 459 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 GTS++SPYL G++SP + R + L+WRE Sbjct: 460 ---SGTSRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKFLDELLVWRELSYSF 516 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGW 348 + S +P + + + K G TG P DAA QL++ G Sbjct: 517 CFYRYSQLQSLSVLPRWAQDTLAAHATDPRVVKTLQQLELGATGDPFWDAAQCQLSSYGE 576 Query: 349 MHNRLRMITASFLVKDLLVDWRI--GEEYFMSQL-LDG-DLASNNGGWQWAAS 397 +HN +RM L+ R + + LDG D AS GG W Sbjct: 577 LHNNVRMTWGKSLLGWCPTPQRALDVALHLNHRYALDGCDPAS-YGGVLWCFG 628 >gi|157413923|ref|YP_001484789.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215] gi|157388498|gb|ABV51203.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215] Length = 384 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%) Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E + + K + + + + D L + G T ++ + +L + Sbjct: 74 EIFWRVYWKGWMENRPKVWENFISEKNLDFDYELYKKAINGNTEIDFFNSWVLELKQHNY 133 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 +HN RM AS + +L + W++G ++F L DGD ASN W+W Y Sbjct: 134 LHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLLSWRWVGGLQTKGKQY 190 >gi|89255766|ref|YP_513128.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] gi|167009709|ref|ZP_02274640.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica FSC200] gi|254367212|ref|ZP_04983242.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] gi|290953050|ref|ZP_06557671.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] gi|89143597|emb|CAJ78781.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica LVS] gi|134253032|gb|EBA52126.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica 257] Length = 201 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 78/214 (36%), Gaps = 15/214 (7%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 +S RQ F+ L ++ L++ G D++E + + + ++ +++ Sbjct: 1 MSHRQYLFLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQET 56 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + + + ++ ++ ++ + + + + +++A Sbjct: 57 WNDWTYQRDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRA 112 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + + ++ P S + D G AL IL F ++ Y + Sbjct: 113 PTKLKFICENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTK 167 Query: 233 QRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLK 264 + P S+LSPY++ GV+S ++ + + Sbjct: 168 EMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKAN 201 >gi|212275870|ref|NP_001130580.1| hypothetical protein LOC100191679 [Zea mays] gi|194689542|gb|ACF78855.1| unknown [Zea mays] Length = 493 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 71/466 (15%), Positives = 131/466 (28%), Gaps = 66/466 (14%) Query: 11 LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54 + W+ D R+ DN L A F P + G Sbjct: 29 VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 RQ F+ L ++ +G+ F + + L S + + L + Sbjct: 77 LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131 Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168 + + L + D ++P + K + +I Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191 Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A ++ + +P + L F Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFL 251 Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +++ Y R+ P S LSPYL G +S ++C E + PKS Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPII 336 +I RE + + P W K + + T P+ Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQLENAKTSDPLW 368 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQ 393 +A+ ++ G MH +RM A +++ +DG + G Sbjct: 369 NASQLEMVHHGKMHGFMRMYWAKKILEWTSQPEEALSIAIYLNDKYHIDGRDPNGYVGCM 428 Query: 394 WAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRHWLP 430 W+ +D P F R N ++FD ++++ +P Sbjct: 429 WSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLVP 474 >gi|330814061|ref|YP_004358300.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487156|gb|AEA81561.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 271 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 13/208 (6%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71 +W+R D RI DN ALY C+ + K+ A FI ++++ + Q +++ +L+ Q Sbjct: 7 LWVREDFRIDDNPALYNICNIQE-KIEAFFIYDEKKFKNR---SAQRWWLHKTLVNFQNK 62 Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L+ GI F+ + D+ I ++ +++ +YN +E + +EK L Sbjct: 63 LNNIGISFKVY----ADNEIVYIKKLIKNEKIDNFYYNAIARPDERLIENEIEKNLAIYD 118 Query: 132 ICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLTG 186 + +S L P S+ ++V+TP+ + + ++ + + Sbjct: 119 VNYEKFESNLLQDPFSVRKKDNTPFQVFTPYWRNAEEQYLKNKNFISKKITYKKSTIKED 178 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQN 214 N+ F+ + + GE Sbjct: 179 NTAVLNLILPKKEWFEKFEKFWTPGEDM 206 >gi|123969094|ref|YP_001009952.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601] gi|123199204|gb|ABM70845.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601] Length = 384 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 15/194 (7%) Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 + F K K+ Y + R+ +LSP+++ +LS + +K ++ Sbjct: 8 QNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLIHDIKSKYKIKN 67 Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331 E + + K + + + + D L + G T Sbjct: 68 STKF-----------VEEIFWRVYWKGWMENRPKVWRNFISENNLDFDYELYENAINGNT 116 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 ++ + +L ++HN RM AS + +L + W++G ++F L DGD +SN Sbjct: 117 ELDFFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLLS 176 Query: 392 WQWAASTGNDSVPY 405 W+W Y Sbjct: 177 WRWVGGLQTKGKQY 190 >gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum] Length = 150 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 37 VIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 V+AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 5 VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 60 Query: 92 EWLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 61 TVLVELAKAVGAEAVYAHREVSH 83 >gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense] Length = 173 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 37 VIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 V+AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 9 VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 64 Query: 92 EWLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 65 TVLVELAKAVGAEAVYAHREVSH 87 >gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46] gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46] Length = 465 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 70/429 (16%), Positives = 136/429 (31%), Gaps = 29/429 (6%) Query: 19 RITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQ 74 R DN AL A ++ + V + + +AR F+ L + + + Sbjct: 35 RSRDNPALEHAIDEANRLGLPVVVGFGLLDGGR-TFPEANARHYAFLLQGLAAARAGVER 93 Query: 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134 +GI F + + ++ L ++ E+ R + Sbjct: 94 RGIAFVLRRSTPAAAALALGAEAALAVLDRGYLTVQRAWSAEIARGLACPVVQVEGDVVV 153 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 + + + ++ +++ + L V L + + + Sbjct: 154 PVETASDKHEFAARTLRPKLQRLWDSYLAPLRARRVAHAADGLALASDLDVSDPEAALAA 213 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 D + + GE A+ L + Y R+ P S +SPYL G + Sbjct: 214 LTLDRAVRPVRRFR-GGEDEAMARLDAYLAGPFAQYGTVRNRPEAGAASHMSPYLHFGQI 272 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--- 311 SP + P+ A ++ RE + + + P + +P Sbjct: 273 SP---VAIALKVRAAAAGGPEDKASYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARR 329 Query: 312 ----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL-- 365 + + A ++G T +AAMR++ G+MHN LRM +++ Sbjct: 330 ALAEHAGDRRDPLYDEAALEEGRTHDRHWNAAMREMRETGYMHNHLRMYWGKKILEWSPS 389 Query: 366 -LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR--IFNPTIQ-----GKR 417 +R LDG ++ W G P+ R IF ++ Sbjct: 390 PEEGFRRTLRLNNRYFLDGRDPNSFTNVAWI--YGLHDRPWGRRPIFGTVRYLGPNTLRK 447 Query: 418 FDPQGTFIR 426 FD G ++R Sbjct: 448 FDAAG-YLR 455 >gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA] gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei] Length = 812 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 52/415 (12%), Positives = 132/415 (31%), Gaps = 23/415 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66 L+ L D RI DN ++ A + ++A +I E++ + I+ + L Sbjct: 318 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFTERYINIK-----LKVLK 372 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ + I F D+ +E+L + + ++ + + + Sbjct: 373 NLEEGFKKLNIPFYVIPIFMIDEFMEFLR--IHEIKTVVCDFHSLEYQKKFVENLVQMSN 430 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + + + +++ + + + + L L++ I+ Sbjct: 431 KKKIKVLQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQTIKYPE 490 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQL 245 P ++ + + + + + + +R+ P + L Sbjct: 491 PFDIVSLYKKLTVNNSCSVLSNFVCTEKKAKEILENFCKNKLDKYSVKRNDPNYDTINLL 550 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCM 303 PY+++G++S ++C + + + S + N+ LI +E + + + Sbjct: 551 IPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYDN 610 Query: 304 GKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 W ++ + ++ T I + QL G +H LRM Sbjct: 611 FNGAKDWAKESLKKHELDKRNHLYDYEDFRSARTHNDIWNCCQLQLVNEGTIHEFLRMYW 670 Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409 A ++ + + +DG A+ + S IF Sbjct: 671 AKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIMSIMGVHDQSWNERSIF 725 >gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii str. 17XNL] gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii yoelii] Length = 849 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 47/373 (12%), Positives = 121/373 (32%), Gaps = 20/373 (5%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66 L+ L D RI DN ++ A + ++A +I E++ + I+ + L Sbjct: 354 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFTERYINIK-----LKVLK 408 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ + I F D+ +E+L + + ++ + + + Sbjct: 409 NLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IHEIKTVVCDFHSLGYQKQFVENLVQMSN 466 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 + I + +++ + + + + L L++ I+ Sbjct: 467 KKKIKILQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQIIKYPE 526 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQL 245 P ++ + + + + + + +R+ P + L Sbjct: 527 PFDIVSLYKKLTVNNSCSVLSNFVCTEKKAREILEDFCKNKLDKYSVKRNDPNYDTINLL 586 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCM 303 PY+++G++S ++C + + + S + N+ LI +E + + + Sbjct: 587 IPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCFYNKNYDN 646 Query: 304 GKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 W ++ + ++ T I + QL G +H LRM Sbjct: 647 FNGAKDWAKESLKKHELDKRNHLYDYEDFRNARTHNDIWNCCQLQLINEGTIHEFLRMYW 706 Query: 358 ASFLVKDLLVDWR 370 A ++ Sbjct: 707 AKKILNWSENSRT 719 >gi|50914602|ref|YP_060574.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] gi|50903676|gb|AAT87391.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394] Length = 62 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483 P+L +VP +Y+H P + +YP PIVDH K + +Y AK+++ + Sbjct: 2 PQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKI 61 >gi|194336953|ref|YP_002018747.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1] gi|194309430|gb|ACF44130.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1] Length = 104 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ N AL A ++ ++ +F P R F+ L + Sbjct: 21 IYWMSRDQRVRHNWALLFARRKAELLQQPLVVLFTLAPTFLGAP---LRHYDFMLKGLRE 77 Query: 68 VQKSLSQKGIVFQYHQCSN 86 V+ L I F Q Sbjct: 78 VEADLKTLNIPFLLLQSQP 96 >gi|254451912|ref|ZP_05065349.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198266318|gb|EDY90588.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 276 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 38/73 (52%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 D ++L G++HN RM AS + L + WR+G ++F LLDGD A+N W Sbjct: 1 MDYFDTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNW 60 Query: 393 QWAASTGNDSVPY 405 +WAA PY Sbjct: 61 RWAAGLHTRGKPY 73 >gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01] gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01] Length = 473 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 68/407 (16%), Positives = 123/407 (30%), Gaps = 25/407 (6%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 DLR+ +N ++ A + S +FI P + + Q I ++ ++K ++ Sbjct: 23 RDLRLLNNHCIHYAYNLSYHYQSQMFIGVP--IKDIKCNDVQYSLILENIEDLRKESIKQ 80 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVICK 134 + N + + L + I ++ ++ I Sbjct: 81 NLYLTILDNVNTFVKTNKIKNIILDWSPLREHIAFCNNIKDLCTKDKLFCIQIDSHNIVP 140 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 V S + L + +Q + + ++ + P Sbjct: 141 CKILDVYKRTSSSVKIQLFKHFFEYLNEYDDLQLEKSVNDSNFTSKNMKFIINAWDTLEP 200 Query: 195 RFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 F+ P + L ++ F K + Y E R+ P + G S Sbjct: 201 HKFNDKKKVSSFKCNIPKYEPAKYYQGTYSAGLKVMDDFFNNKFHIYNECRNNPDVDGLS 260 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSPY+ +G+LSP++ E+F G + + IWRE H Sbjct: 261 NLSPYIHLGILSPQKIIKLAYEKFYKKDKDNLDGYVAEI--FIWRETSEHFCYHNKDYDN 318 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + W + G T +AA QL + +H +RM Sbjct: 319 IMGALEWARDSLHEHAKDEREHLYTKEELEFGKTNDSFWNAAENQLLKLNKIHGYVRMYW 378 Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGND 401 A LVK + E +DG+ + G W D Sbjct: 379 AKQLVKWTKTPEEAVKIGIELNDKYSIDGNDPNGYTGVMWCICGTMD 425 >gi|218506351|ref|ZP_03504229.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil 5] Length = 57 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 ++W R DLR+ DNKAL AA H S +I ++I PE + A Q+ Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIICLYIREPEAAGTGPLGAAQAW 57 >gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis] Length = 157 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295 TS LSPYL G +S R+ + + + D + + A +L + R++ R++ Sbjct: 28 NSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYIC 87 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 +P + + W+ D +AW+QG TG+P++DA MR+L GWMHNR+R+ Sbjct: 88 FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 146 Query: 356 ITASFLVK 363 I +SF VK Sbjct: 147 IVSSFAVK 154 >gi|222641972|gb|EEE70104.1| hypothetical protein OsJ_30114 [Oryza sativa Japonica Group] Length = 741 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 13 WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 W ++DLR+ D+ L AA V+ +++ S + ++ Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILD--DASKWREQLLF 97 >gi|302847739|ref|XP_002955403.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f. nagariensis] gi|300259245|gb|EFJ43474.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f. nagariensis] Length = 128 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46 S+ L WLR DLR DN+AL AC +DA V+ VF P Sbjct: 69 SLGLWWLRRDLRTADNEALTGACRQADA-VLPVFCFDPR 106 >gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797] gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797] Length = 497 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 65/426 (15%), Positives = 124/426 (29%), Gaps = 39/426 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R N +L A S + + + S R F+ ++ + Sbjct: 24 LYWMIANRRTRYNYSLQRAVELSKELNKPLLVFEALRCGYEWASDRLHRFVLQGMVDNRD 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 SL + + + L + + + I ++ + ++ Sbjct: 84 SLQDSPVGYYCYVEPKAGHGSGLLSALATKACAVVTDDFPCFFIPQMLKSVAPRLSVRLE 143 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 I + + ++ L Q L + +P Sbjct: 144 AIDSNGLLPLRAASQIYPTAYAFRRFLHKALPDHLDQTPKINPLSHIDLPEFSSLPAKIL 203 Query: 191 SNIPRFFDY--------------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 P D Q F G + A L++F + Y E+R++ Sbjct: 204 ERWPMASDQLLQATPEVLADLPLDHQVGPADFDGGMKAASKTLKQFLNVRFERYAEERNL 263 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE------------ 284 P + TS LSPYL G +S + + R+ + K + Sbjct: 264 PEEEVTSGLSPYLHFGHISVHEVFKRVADREDWNAAKVIDQKATGKRAGWWQMSETAEGF 323 Query: 285 ----LIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFP 334 + WRE ++ + W + + L+ ++Q T Sbjct: 324 LDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEHAADKRDPCYTLEEFEQARTHDE 383 Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGG 391 + +AA QL T G MHN +RM+ ++ E +DG ++ G Sbjct: 384 LWNAAQTQLVTEGRMHNYMRMLWGKKILHWSKSPQAALEIMMHLNNKYAVDGRNPNSYSG 443 Query: 392 WQWAAS 397 W Sbjct: 444 IFWCLG 449 >gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM 3776] Length = 493 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 69/427 (16%), Positives = 129/427 (30%), Gaps = 44/427 (10%) Query: 11 LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ R R+ N L A H + + + I P R S R HF+ + + Sbjct: 28 LYWMISAR---RLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAE 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++GI + + + +++Y + + + L ++ Sbjct: 85 HHALCQERGIAYHPYVEPEPGHGVGLVEAYAQKAAAV-ITDDFPCYFLPRMVQTLGQRID 143 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 S + + A + K + AD + P+ ++ + G Sbjct: 144 VPLECVDSNGIFPMRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSMEIPGQ 203 Query: 188 VTPSNIP-------------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 + P F G + A + +F K ++ Y + R Sbjct: 204 IARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRYADDR 263 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNE------ 284 + P + S LSPYL G +S + ++RL + W Sbjct: 264 NNPEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSPAAEA 323 Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGF 333 + WRE + + + W + + T Sbjct: 324 FLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIAQTHD 383 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390 + +AA RQL G MHN LRM+ +++ L + E +DG ++ Sbjct: 384 ELWNAAQRQLVREGRMHNYLRMLWGKKVLEWSLTPQQAVETLIHLNNKYAVDGRNPNSYS 443 Query: 391 GWQWAAS 397 G W Sbjct: 444 GIFWVFG 450 >gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545] Length = 457 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 69/420 (16%), Positives = 120/420 (28%), Gaps = 43/420 (10%) Query: 13 WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 W D R+ DN AL A + + V VF+ P SARQ F+ L ++ Sbjct: 1 WCSRDQRVDDNWALLHALSVAKSRNVPVAIVFVLVPSFAS---ASARQYAFMLRGLREMA 57 Query: 70 KSLSQKGIVFQYHQCS------------------------NFDDSIEWLDSYCLQQRVTK 105 K+ + F + EW + + Sbjct: 58 KTCEATRLPFHLVRGDANPAAAAAAAATRLDASLVVTDFSPLRAPREWRNDLSDALKRAN 117 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + + N V + KR + L + + + Sbjct: 118 VTVHEVDAHNVVPVWEASNKREYAARTIRPRITKRLAAFLTSFPTRDAVRDAALAAAASP 177 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 V R I +P +P + P + + F Sbjct: 178 RATDVPTPERVDWDALIADARGRDGGVVPETL-HPTRRKPPGEAAARRALVGGPDAFLPS 236 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 ++ Y ++ D + S LSPYL G LS ++ L+ + + Sbjct: 237 RLAMYDKRNDPNVPRALSGLSPYLHFGQLSAQRVA--LETNAARTEATAAAADAFVEEVV 294 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW-----KQGYTGFPIIDAA 339 + E + P+ W E + + + A+ + G T + +AA Sbjct: 295 VRSELSDNYCFHEPNYDNINGASGWAIESLRLHAEDARDPAYSLEELESGSTRDELWNAA 354 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMS-QLLDGDLASNNGGWQWA 395 ++ G MH LRM A +++ Y LDG ++ G WA Sbjct: 355 QLEMVHFGAMHGFLRMYWAKKILEWTAEGPEVALERAIYLNDKYQLDGRDSNGYVGCMWA 414 >gi|110637465|ref|YP_677672.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC 33406] gi|110280146|gb|ABG58332.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC 33406] Length = 103 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 +SV++VW + DLR TD++ LY + V+ V+ P + R S F++ S Sbjct: 2 NKVSVNIVWFKRDLRFTDHEPLYN-DRQQNVPVLLVYFFEPSMMTYNNSDTRHSRFVHES 60 >gi|218202510|gb|EEC84937.1| hypothetical protein OsI_32152 [Oryza sativa Indica Group] Length = 741 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 13 WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 W ++DLR+ D+ L AA V+ +++ S + ++ Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILA--DASKWREQLLF 97 >gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus] gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus] Length = 372 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 10/139 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A+ A + F T S RQ F+ L Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLN---ASLRQFDFLLEGLKS 180 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 VQ+ + I F S D L+ + ++ + + ++ +L Sbjct: 181 VQRECHELNIGFHVLDGS--GDLT--LNDWVQTNNISAVVCDFNPLRVVRDWVATVKSQL 236 Query: 128 QHRVICKSFDDSVLLPPGS 146 V D ++P Sbjct: 237 APHVFFAQVDAHNIVPCWQ 255 >gi|77920307|ref|YP_358122.1| deoxyribodipyrimidine photolyase [Pelobacter carbinolicus DSM 2380] gi|77546390|gb|ABA89952.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter carbinolicus DSM 2380] Length = 490 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 111/425 (26%), Gaps = 38/425 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R++ N AL A + + + + R F + + Sbjct: 25 LYWMNATRRLSWNFALQRALSWARKLDRPLLVVETLPCDHPHANLRHHAFALDGMADNAR 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ--------------QRVTKLFYNRQYEINE 116 ++ + +IE + + T+ R E Sbjct: 85 YMADHPATYYPFVEDQPGQNIELIAALAKHACVVLCDLRPLRESLGETEQLAGRLSGRLE 144 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + L + +L H L M L Sbjct: 145 RVDSNGILPLLAADREFTTAYSLRRFLQRHLLPHLLNMPLPEPLAEHTLPPCPAVPSAIR 204 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 PA + G + A L F +E + YV R+ Sbjct: 205 KRWPAADRQLLTEDRSRLHNLPIGQNTPAVPTKGGSEAARKALDLFLREHLDLYVAHRNQ 264 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNE----- 284 P TS LSPYL G +S + RL + +SG + + Sbjct: 265 PQRDVTSGLSPYLRWGHISSHEIVQRLLDREGWHPSDLGLETRGQRSGWWGVGADAEAFL 324 Query: 285 ---LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPI 335 + WRE + W + + ++ G T P+ Sbjct: 325 DQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEEFQAGRTHDPL 384 Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGW 392 +AA QL G +HN LRM+ +++ LDG ++ G Sbjct: 385 WNAAQMQLVREGRLHNYLRMLWGKKILQWSPTPELALATMIELNDRFALDGCDPNSYSGI 444 Query: 393 QWAAS 397 W Sbjct: 445 GWVLG 449 >gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM 14796] Length = 443 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 120/402 (29%), Gaps = 29/402 (7%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W++ R+ N + A + + ++ + I + + R F L Sbjct: 21 LYWMQGAFRVKYNHSFEYAKYLSNKHNIPLLVLIIVD---FSYPEGNFRSFKFFLEGLKD 77 Query: 68 VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 V + Q GI + L SY ++ + + ++ E Sbjct: 78 VFEETISQQIGINIVV------GSFQDVLKSYIDNAKIMITDKSYLPNLINIKNTIYSEN 131 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 ++ + + V + A + + + + + Sbjct: 132 KITIYQVDTNLVIPVNIVSQKKEYAAYTIRPKILKLLYEYRNDFEEIKYNGSFL-KPKTE 190 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 + + + G + A IL F +K YY + R+ P + S + Sbjct: 191 VDLNNIENELRKQNLVNVLPAPYIGGYKEAKKILDYFVSKKFKYYKDNRNNPEKESESNI 250 Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 SPYL G +SP + + L+ + RE + + + + Sbjct: 251 SPYLHFGNISPLEILDTLEIFDKSSENYYSFFEEMVIR----RELAHNFTYYSNDLNNLE 306 Query: 306 PFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 +P + + + ++ T I +A+ R+L G +HN +RM Sbjct: 307 NLLPAWAFKTFYEHKDDKREYVYSLEEFENSKTHDEIWNASQRELKKRGKIHNYMRMYWG 366 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ + LDG ++ G W Sbjct: 367 KKIIEWSKNIEDAYDAMIYLNNKYALDGRDPNSYVGILWCFG 408 >gi|258541537|ref|YP_003186970.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256632615|dbj|BAH98590.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01] gi|256635672|dbj|BAI01641.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-03] gi|256638727|dbj|BAI04689.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-07] gi|256641781|dbj|BAI07736.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-22] gi|256644836|dbj|BAI10784.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-26] gi|256647891|dbj|BAI13832.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-32] gi|256650944|dbj|BAI16878.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653935|dbj|BAI19862.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO 3283-12] Length = 211 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 8/168 (4%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 M + + LV LR+D R+ DN AL+AAC V+ ++ G R + + Sbjct: 1 MVDAHSPAPVLVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAALQDASGT--RIADW 57 Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 A+ Q+ SL ++G + T +F+NR+Y+ + D Sbjct: 58 AQAACAQLATSLHEQGQTLFMLSGPTRLSV----PALAQAVHATDVFWNRRYDAPGIAAD 113 Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 + L+ + + S +L P +I A Q Y+V+T + +A Sbjct: 114 TDVHASLKKQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARN 161 >gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis] Length = 263 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 9/242 (3%) Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ +G D E L + +F+N Y RD+ +E Sbjct: 2 ALREDYRDRGGGLVVAH----GDPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVESA 57 Query: 127 LQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 L I V PG+I + Y V++ F K + ++ A+R Sbjct: 58 LDDADIDHETFHDAVHHEPGAITTNDGDPYAVFSYFGKKWLDREKESSYPPPNGDALRAG 117 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 P++ FD P G + A L FC+ + Y +R+ PA GTS+L Sbjct: 118 DDDLPTSDDLGFDEPDATPPE---AGTEAARDRLDSFCEAAIGEYETEREYPARAGTSRL 174 Query: 246 SPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 S L G + R+ R+ + + ++ EL WREFY ++ + P V Sbjct: 175 SQDLKYGTIGIREVSERVAEAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVVTE 234 Query: 305 KP 306 Sbjct: 235 NY 236 >gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri] gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri] Length = 529 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 111/378 (29%), Gaps = 33/378 (8%) Query: 23 NKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79 N+AL A ++ VIA+F + R F++ L +++++L ++ I F Sbjct: 62 NEALETAVDRANVSGVPVIALFC---STANYPEANERHIGFMFEGLCELREALERRKIAF 118 Query: 80 QYHQCSNF----------------DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 CS + L + + + E + V + Sbjct: 119 YAVACSPPEAIIVASERAVEIVVDGAYLRLLRRWREELATRATCTVTEVETDCVVPQLSM 178 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + L + +Y A ++ + +P R Sbjct: 179 KHARAEVAAATFRPKVLPLIGKYTRVACAVLPYIYGALDDATRKSFESTIVEFDVLPLHR 238 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQG 241 + +G Q+ K Y + R+ P + Sbjct: 239 GVDACLGVLDTHGLVRDPKCPRVSSHVGGQSQARAKLDAFLTKKMLSRYHKSRNDPTLCL 298 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSP++ G +S + + E + +L+ELI R A Sbjct: 299 QSHLSPHIHYGQISVVEIARKTLEFRDAHKEDADVCASIDVFLDELIVRRELAINFALRN 358 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQ-------GYTGFPIIDAAMRQLNTIGWMHNR 352 +P K K + + W G T + +A+ RQL + G HN Sbjct: 359 PNYDTYDGLPTWAKETLEKHADDRREWTYTLEEFECGSTHDKLWNASQRQLVSTGKQHNY 418 Query: 353 LRMITASFLVKDLLVDWR 370 LRM +++ Sbjct: 419 LRMYWGKKILEWSASPEE 436 >gi|124267245|ref|YP_001021249.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1] gi|124260020|gb|ABM95014.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1] Length = 88 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 DLR+ D+ A A +A+FI P R+ ++ + ++ +L+ +G Sbjct: 7 DLRVADHATPAEAARGDAA--LALFIVEPAWLTSPESHPRREAWLLKCRVALRDALAARG 64 Query: 77 IVFQYHQCSNFDDS 90 + D Sbjct: 65 LPLPVRTGEAVDGP 78 >gi|227553401|ref|ZP_03983450.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|227177452|gb|EEI58424.1| conserved hypothetical protein [Enterococcus faecalis HH22] Length = 80 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 ++W R DLR+ DNKAL A NS A ++I +F P+Q+ Q SA + F +ASL + Sbjct: 4 VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWL 94 + + Q + H + ++ Sbjct: 61 ERIDQ-----EAHLQIMVGEPLDLF 80 >gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1] Length = 507 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 64/442 (14%), Positives = 118/442 (26%), Gaps = 58/442 (13%) Query: 11 LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + WL R R+ N AL A + + I P + R S R FI + Sbjct: 26 VYWLIAQR---RLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRD 82 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +V+ + L + + + + Sbjct: 83 NAAEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPA 142 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + +I + + + + AL Q + L Sbjct: 143 RLELIDSNGVLPLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPCPD 202 Query: 188 VTPSNIPRFFDYPFQAIDPMF----------------------------PIGEQNALHIL 219 R P + + P G A Sbjct: 203 GESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTVEATRRW 262 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 ++F +K+ Y + R+ P T+ LSP+L G +S + + + E + Sbjct: 263 QEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSILEHEGWSADQTSKPNG 322 Query: 280 SWLN--------------ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + L WRE + P +P + N+ + Sbjct: 323 KNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 382 Query: 326 -------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF 376 ++ T I +AA R+L G MHN +RM+ ++ + Sbjct: 383 HLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEFMIHL 442 Query: 377 MSQL-LDGDLASNNGGWQWAAS 397 ++ LDG ++ G W Sbjct: 443 NNKYGLDGRDPNSYCGILWVLG 464 >gi|295313748|ref|ZP_06804325.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp. holarctica URFT1] Length = 195 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 74/207 (35%), Gaps = 15/207 (7%) Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F+ L ++ L++ G D++E + + + ++ +++ + + Sbjct: 2 FLSECLEELNTELTKLGQSLAI----MLGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQ 57 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++ ++ ++ + + + + +++A + + Sbjct: 58 RDIKLEKFFK----QNNIVWHQPYQNGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFI 113 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 ++ P S + D G AL IL F ++ Y ++ P Sbjct: 114 CENQIKIPTAESLDLEYDDCY-----KRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVT 168 Query: 240 QG--TSQLSPYLSIGVLSPRQCWNRLK 264 S+LSPY++ GV+S ++ + + Sbjct: 169 AFKSCSRLSPYIAFGVISLKEIYQKAN 195 >gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 494 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 75/452 (16%), Positives = 121/452 (26%), Gaps = 51/452 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ + R DN AL A + A + V+ RQ F+ + + Sbjct: 44 LYWMHREHRARDNWALLHAHAEAARLGAPLAVVWCLANSFLGAT---IRQFGFLLRGMEE 100 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 Q+ L+ GI + + E + Y + + + + L Sbjct: 101 TQRHLAAAGIPLVVLR----GNPPEEVVRYARSANAALVVTDFDVLRLKRTWLASAARGL 156 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLTG 186 D ++P + P L+ + L + Sbjct: 157 AGVCSLHEVDGRNVVPCRVASPKREYAARTLRPKIHRLLPEFLTPIPALPPASSVSGASS 216 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK----------FCKEKVYYYVEQRDI 236 P + +G + + + R+ Sbjct: 217 VPVPDVDWASLRDNLAVDRTVAEVGPLPGMPDIAPGEDAARAALDDFIHARLHRYHLRND 276 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 P G S LSPYL G+LS + L A ++ RE + Sbjct: 277 PNAHGVSGLSPYLHFGMLSAQ---RAALAAQAHLEAPDDCRASFLEELIVRRELADNFCL 333 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMH 350 F W A T P+ +AA ++ G MH Sbjct: 334 HAQDYDAVTCFPDWALATLDKHRHDPRPALYDEAQLAAARTADPLWNAAQTEMVCAGRMH 393 Query: 351 NRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF- 406 LRM A ++ R LDG ++ G W+A G P+ Sbjct: 394 GYLRMYWAKQILLWSPTPEDAVRTAVTLNDRYFLDGRDSNGYTGIAWSAG-GVHDRPWGE 452 Query: 407 RIFNPTIQG-----------KRFDPQGTFIRH 427 R P QG +FD G +IR Sbjct: 453 R---PV-QGTIRSMTYNGARSKFD-VGAYIRR 479 >gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus] Length = 395 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 105/354 (29%), Gaps = 25/354 (7%) Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 F L + K Q I F S E L + + + + + R Sbjct: 9 FWIEGLKLIHKECKQLNITFVVLNGSGD----ETLVDWVKKYNIAGIVCDFNPLRIVRRW 64 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 ++ +L V D ++P + K +++ + + Sbjct: 65 TARVKTQLPSDVYFAQIDAHNIVPCWVASQKQEINARTMRNKLKTNMKSFL-KPFPLVMK 123 Query: 180 PAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 +I + P+ G NA L KF + +++Y Sbjct: 124 HSIDSKARIDPATCDEIDWKKLLESRDADKNIEPVTWAQAGYNNACVALAKFIDDNLWHY 183 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 E R+ P S +SP+ G +S ++ L + + RE Sbjct: 184 KETRNDPNADSQSNMSPWYHFGQISVQRVVWYLIVAKMQHFESNV--ETYIEECFVRREL 241 Query: 291 YRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + + + + W ++ E + + + + T + +AA QL Sbjct: 242 ADNFCYYNINYDRFEGAPDWAKETLSLHANEGREYCYNRRELENSETHDILWNAAQTQLK 301 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS---QLLDGDLASNNGGWQWA 395 T G MH +R+ A +++ + LDG + G W+ Sbjct: 302 TQGKMHGYMRIYWAKKILEWSISPTVALINAIYFNDKYSLDGRDPNGYAGCMWS 355 >gi|218459246|ref|ZP_03499337.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli Kim 5] Length = 141 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 39 AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 ++I P + A Q+ +++ SL + SL ++ +++E L Sbjct: 13 PLYIREPTPAGTGPLGAAQAWWLHHSLEALDMSLRKRQGRLVL----ASGEALEVLRGVI 68 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKV 157 + +++NR+Y+ + + D ++ L+ + I +SF + P ++ Y+V Sbjct: 69 RKSSADAVYWNRRYDPSGMSIDVRIKAELEKQGIEARSFTGQLPHDPCRLVTGKGTPYRV 128 Query: 158 YTPFRKALIQ 167 YTPF +AL Sbjct: 129 YTPFWRALES 138 >gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum] Length = 145 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 9/82 (10%) Query: 38 IAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92 +AV+ P + + ++ F+ S+ ++K+L +G Sbjct: 1 LAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPET 56 Query: 93 WLDSYCLQQRVTKLFYNRQYEI 114 L ++ +R+ Sbjct: 57 VLVELAKAVGAEAVYAHREVSH 78 >gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter usitatus Ellin6076] gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter usitatus Ellin6076] Length = 456 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 17/396 (4%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W R + R+ N AL A ++ + + + R F+ + Q Sbjct: 21 LYWCRWNRRVEANHALLHAAETANRMDLPLVVYERLSCAYPTACDRFHTFVLEGVPHFQA 80 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L + GI + + + + + + + Sbjct: 81 QLRKLGIPYIFQLPRR-----KTVRDERRDAVLRDAAVVVTDDCLRAAPRLDVRLEAVDG 135 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + + + A + + ++ P Sbjct: 136 SCIVPVGAIPGRSYAAYSIRPRIHRLLPKYLKAAPALEIRRRSRERFEDLHTEVSAPNIA 195 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 S + FP G A L++F +E++ Y ++ P++ TS+LSPYL Sbjct: 196 SLVAECEIDHGVRASTTFPGGRMAAEAGLQRFLEERLRRYARDKNEPSLHATSELSPYLH 255 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G + + ++E ++ RE + + P + W Sbjct: 256 YGHIGALEVALAVREH---AAAHKLIADEFLEELIVRRELAHNFARYAPRLDSLDVLPDW 312 Query: 311 TEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + ++ T + +A ++L G +H RM +++ Sbjct: 313 ARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNATQKELVLRGKIHGYYRMYWGKRIIEW 372 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 LDGD + W Sbjct: 373 SPSAEEAHATMLWLHDRYALDGDDPNTYTNILWCFG 408 >gi|255671641|gb|ACU26402.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF186_25m_30B18] Length = 487 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 53/396 (13%), Positives = 116/396 (29%), Gaps = 40/396 (10%) Query: 11 LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ R R TDN L A ++++ + + + P + S R F+ + Sbjct: 26 LYWMVSAR---RTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRD 82 Query: 68 VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ G+ + + L++ Q + + + + + Sbjct: 83 NAEAFDGVAGVTYLPYVEPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLD 142 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 +Q V+ + + P V+ + + + L S +P Sbjct: 143 VQVDVVDSNGILPLFAAPREFTTAHSFRRHVHKNVLEHVAEMPEAEPLASAELPPAPARD 202 Query: 187 PVTPSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + + ++ P+ G + + +R+ Sbjct: 203 ALNIAPWAAYTGEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAYGERN 262 Query: 236 IPAIQGTSQLSPYLSIGVLSP----RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + LSP+L G + R+ R + + KP W E + Sbjct: 263 QVERDIGTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESF 322 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------------------LQAWKQGYTGF 333 + + + + W + + +A G T Sbjct: 323 LDQVLTWRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHD 382 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 + +AA RQL G +HN LRM+ A +++ Sbjct: 383 MLWNAAQRQLRREGMIHNYLRMLWAKKILEWTEHPR 418 >gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47] Length = 479 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 61/431 (14%), Positives = 113/431 (26%), Gaps = 52/431 (12%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 R+ N AL A + + I P + R S R FI + +V Sbjct: 6 RLNWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAESLPVV 65 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 + + L + + + + + +I + Sbjct: 66 YYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLELIDSNGIL 125 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + + + AL Q + L R Sbjct: 126 PLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPCPDGESMAERRKKL 185 Query: 199 YPFQAIDPMF----------------------------PIGEQNALHILRKFCKEKVYYY 230 P + + P G A ++F +K+ Y Sbjct: 186 LPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQEFLNKKLSRY 245 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------- 282 + R+ P T+ LSP+L G +S + + L + + Sbjct: 246 NDDRNHPDEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNGKNHGFWNVGEN 305 Query: 283 ------NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA-------WKQG 329 L WRE + P +P + N+ + ++ Sbjct: 306 AEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERPHLYTLAEFENA 365 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYFMSQL-LDGDLA 386 T I +AA R+L G MHN +RM+ ++ + ++ LDG Sbjct: 366 ETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEFMIHLNNKYGLDGRDP 425 Query: 387 SNNGGWQWAAS 397 ++ G W Sbjct: 426 NSYCGILWVLG 436 >gi|255671724|gb|ACU26482.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF186_25m_13D19] Length = 459 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 111/385 (28%), Gaps = 34/385 (8%) Query: 19 RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQ-KGI 77 R TDN L A ++++ + + + P + S R F+ + ++ G+ Sbjct: 6 RTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAEAFDGVAGV 65 Query: 78 VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 + + L++ Q + + + + + +Q V+ + Sbjct: 66 TYLPYVEPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLDVQVDVVDSNGI 125 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 + P V+ + L + L S +P + + Sbjct: 126 LPLFAAPREFTTAHSFRRHVHKNVLEHLAEMPEAEPLASAELPPAPARDALNIAPWAACT 185 Query: 198 DYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 ++ P+ G + + +R+ + LS Sbjct: 186 GEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAYGERNQVERDIGTGLS 245 Query: 247 PYLSIGVLSP----RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 P+L G + R+ R + + KP W E + + + + Sbjct: 246 PHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESFLDQVLTWRELG 305 Query: 303 MGKPFIPWTEKIEWNKDSHL------------------LQAWKQGYTGFPIIDAAMRQLN 344 + W + + +A G T + +AA RQL Sbjct: 306 YTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHDMLWNAAQRQLR 365 Query: 345 TIGWMHNRLRMITASFLVKDLLVDW 369 G +HN LRM+ A +++ Sbjct: 366 REGMIHNYLRMLWAKKILEWTEHPR 390 >gi|76157554|gb|AAX28442.2| SJCHGC08270 protein [Schistosoma japonicum] Length = 165 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 5 TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61 M V L W+ D R+ DN A A + + F P+ + R F+ Sbjct: 80 IKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAET---LRHYTFM 135 Query: 62 YASLLQVQKSLSQKGIVFQYHQCSNFDD 89 L +V+K + I F S+ D Sbjct: 136 IEGLKEVEKECRELCIPFHITSASSIPD 163 >gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2] gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2] Length = 499 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 130/428 (30%), Gaps = 40/428 (9%) Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69 L W+ R+ N +L A + + I + S R FI A + + Sbjct: 25 ALYWMTACRRVHWNYSLDRAVEWALKLNKPLVILEALRTGYPWASDRFHGFIMAGMRDNR 84 Query: 70 KSLSQKGIVFQ--YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L + +++ N D + + VT F + L RL Sbjct: 85 AALKDRNVLYYPYVAPDENADKGLLEALALKAAIVVTDDFPAFFLPNMIRSAAETLTVRL 144 Query: 128 QH-----------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 + + S L L + + ++N ++ + Sbjct: 145 EQVDGNGILPIADTDRIFTTAYSFRRFLQKNLIPHLCAPPKASALKGRSLKNPSRSLVEE 204 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQR 234 + + YP I P P G L +L++F + +Y + R Sbjct: 205 IQKKWPPAPLNDLNATPLNLNPYPIDHIIPPVPGEGGAVRGLRMLKRFIMSGLPHYADGR 264 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNE--- 284 + P TS LSPYL G +SP Q ++ +++ + + + + ++E Sbjct: 265 NQPDQPVTSGLSPYLHFGHVSPHQVFHEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAE 324 Query: 285 ------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTG 332 + WRE ++ W + ++ T Sbjct: 325 AFLDQLITWRELGFNMCRHDEKYDRYASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTH 384 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNN 389 + +AA QL G +HN LRM+ ++ + LDG ++ Sbjct: 385 DSLWNAAQNQLVREGRIHNYLRMLWGKKILHWSASPREALDIMIRLNNRYALDGRDPNSY 444 Query: 390 GGWQWAAS 397 G W Sbjct: 445 SGIFWVLG 452 >gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001] Length = 467 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 61/422 (14%), Positives = 118/422 (27%), Gaps = 26/422 (6%) Query: 23 NKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78 N AL A ++ + + + + R F+ L +L ++GI Sbjct: 36 NPALELAIEEANRLKLPLLVCFGLLDGAN-GFPEANERHYAFLLQGLADAAAALDRRGIA 94 Query: 79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 F + + +I+ + L ++ + R+ + + Sbjct: 95 FLVRRGTPAQVAIDLSEKAALLVLDRGYLAIQKNWYGAIEREAKCRVVQVEGDVVVPVET 154 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 + + ++ K++ + + L V L G Sbjct: 155 ASAKHEYAARTLRPKLQKLWDDYLEPLEPRAVDHPAEGLIERLKLKDGLDVSDPDTLLAK 214 Query: 199 YPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255 F G A L F K+ Y R+ P S +SPYL G +S Sbjct: 215 LKLDTTVGPVKRFRGGHTEAAERLDSFLKDAFAGYGAGRNKPEAGAASHMSPYLHFGHIS 274 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---- 311 P + ++ RE + + +P Sbjct: 275 P---VETALAIRAAEGADRDDRSAYLEELIVRRELAMNHVFHTEGYDDYARAVPEWARKT 331 Query: 312 ---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + + + +G T + AMR++ G+MHN+LRM +++ Sbjct: 332 LAEHADDARPKLYSEEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSP 391 Query: 369 WRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-QGK----RFDP 420 LDG A++ W + IF Q + +FD Sbjct: 392 EEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTRPIFGSVRYQSENSLRKFDA 451 Query: 421 QG 422 + Sbjct: 452 KA 453 >gi|311743861|ref|ZP_07717667.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium marinum DSM 15272] gi|311312991|gb|EFQ82902.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium marinum DSM 15272] Length = 416 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 18/163 (11%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 S++SPY+ G+L W+ + + + +EL+W+E+ RHL A + Sbjct: 75 SRMSPYIRHGLLDLPTVWDAVTDAPAS-------DRRRYRDELLWQEYARHLYARLGTAT 127 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 Q A R+L GW+ N+ RM AS Sbjct: 128 AEPLRFDPPRPAADP----------QWDEQMACTAAVRRELKDDGWLVNQTRMWWASHWT 177 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 WR GE+ F LLDG A+N GWQW TG PY Sbjct: 178 VRHGRHWRDGEDDFFRHLLDGSRAANRLGWQWTVGTG-TGKPY 219 >gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium falciparum 3D7] gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium falciparum 3D7] Length = 1113 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 121/370 (32%), Gaps = 13/370 (3%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L+ L D RI DN +L A + K +F A R+ R L +++ Sbjct: 633 LLLLTRDFRINDNWSLIYAYEKAKKKKAHLF-ACTYLNRKEPFPKRHIDIKLKVLKNLEE 691 Query: 71 SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 ++ + I F D+ +E+L Y ++ + +N E ++ + ++ Sbjct: 692 NMKKILNIPFYLLTIYMIDEFMEFLRIYDIKTIICD--FNPLNETRIFIQNLVELSNIKK 749 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 I + +++ + + + + L++ + I+ P + Sbjct: 750 IKILQVDSHNIVPIWITSKIEESCARTIKPKIQTHISTFLIEYVQLEMFDQIIKYPEPFS 809 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPY 248 S + + + + + H + + K +++ P + + L+PY Sbjct: 810 ISEVFKKLTVYIPCPVLLNFVCTEQKAHEILQNFCSKKLERYSLKKNDPNSEMINLLTPY 869 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN--ELIWREFYRHLMAFYPSVCMGKP 306 ++ G++S ++C + + + ++ +E + + + Sbjct: 870 INFGIISSQRCVLEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDNFNG 929 Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 W + + + +K T + + QL G +H LRM Sbjct: 930 GKDWAKDSLKKHDSDKREYLYDFDDFKNAKTHDDLWNCCQLQLINEGIIHEFLRMYWCKK 989 Query: 361 LVKDLLVDWR 370 ++ Sbjct: 990 ILNWSGNSKT 999 >gi|152967990|ref|YP_001363774.1| deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans SRS30216] gi|151362507|gb|ABS05510.1| Deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans SRS30216] Length = 371 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 14/158 (8%) Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 ++LSPY+ G+L W + K + +EL+W+E+ RHL Sbjct: 41 TRLSPYVRHGLLPLPTVWAAAGDAPARDRAK-------FRDELLWQEYARHL-YARLGPA 92 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 +P + + +L+ GW+ N+ RM AS Sbjct: 93 TARPLRFAAPVPAQPWEREPWPQ------DMACVATTTAELHEEGWLVNQTRMWLASQYS 146 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400 DWR G LLDG A+N GWQWA TG Sbjct: 147 VRAGADWREGAREMYRHLLDGSPAANRLGWQWAVGTGT 184 >gi|220918322|ref|YP_002493626.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1] gi|219956176|gb|ACL66560.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1] Length = 486 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 71/432 (16%), Positives = 112/432 (25%), Gaps = 47/432 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V L W+ + R N AL A V + P + S R F+ + Sbjct: 21 AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVVEPLRCGYPHASDRLHAFLLEGMRD 80 Query: 68 VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L + + D +E L + R + + + Sbjct: 81 NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135 Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 RL R+ V G A + + L D + P Sbjct: 136 RLDVRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPTWLDRLPAEDPLARAPPPWGA 195 Query: 185 TGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + PV + P G A L F +E + Y Sbjct: 196 SVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLREGLDGY 255 Query: 231 VEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284 E+R+ P +S LSP+L G +S + + + Sbjct: 256 AERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVATPPRGARAGWWALS 315 Query: 285 ----------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------Q 328 L WRE A P W + A Sbjct: 316 PSAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAALEA 375 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDL 385 T P+ +AA RQL G +H LRM+ +++ LDG Sbjct: 376 AETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDGRD 435 Query: 386 ASNNGGWQWAAS 397 ++ G W Sbjct: 436 PNSVAGIAWCLG 447 >gi|187478088|ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] gi|115422674|emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 407 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 W+ EL WR +++H+ + + + + + + TG P+ID Sbjct: 74 QHRWVMELGWRAYFQHVWDARGDDIFAS--LRPGPRPDEAYATEMPPDICEARTGLPVID 131 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397 A+R L G++HN R+ AS++V V WR ++ + LLDGDL SN+ WQW A Sbjct: 132 LAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGSNHLSWQWVAG 191 Query: 398 TGNDSVPY 405 T + PY Sbjct: 192 T-ASAKPY 198 >gi|197123524|ref|YP_002135475.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K] gi|196173373|gb|ACG74346.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K] Length = 486 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 72/432 (16%), Positives = 113/432 (26%), Gaps = 47/432 (10%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 +V L W+ + R N AL A V + P + S R F+ + Sbjct: 21 AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVLEPLRCGYPHASDRLHTFLLEGMRD 80 Query: 68 VQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L + + D +E L + R + + + Sbjct: 81 NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135 Query: 126 RLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 RL R+ V G A + A + L D + P Sbjct: 136 RLDVRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPAWLDRLPAEDPLARAPPPWGA 195 Query: 185 TGPVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + PV + P G A L F ++ + Y Sbjct: 196 SVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLRDGLDGY 255 Query: 231 VEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284 E+R+ P +S LSP+L G +S + + + Sbjct: 256 SERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVAAPPRGARAGWWALS 315 Query: 285 ----------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------Q 328 L WRE A P W + A Sbjct: 316 PSAEAFLDQLLTWRELAFVTCAHVPDHRAYASLPAWARATLARHAADPRPASYGRAALEA 375 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDL 385 T P+ +AA RQL G +H LRM+ +++ LDG Sbjct: 376 AETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSPTPEEAHATMLELNDRHALDGRD 435 Query: 386 ASNNGGWQWAAS 397 S+ G W Sbjct: 436 PSSVAGVAWCLG 447 >gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes] Length = 499 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 73/451 (16%), Positives = 144/451 (31%), Gaps = 40/451 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ + R DN L A + ++ + + + G AR F+ L + Sbjct: 33 VYWMLREQRAQDNWRLIHAVNEANKMNVPIAVTFNLFDAFKGAKARHLGFMLRGLKLLHS 92 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + + F Q + +E + + ++ + L + + + L K + Sbjct: 93 NLLLQHLPFFLFQ----GEVVETIPKFLIECGASLLVTDFSPLREIRKYKEELCKIIDDS 148 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------QADLRSLPVPAI 182 V D ++P + + L+ + P I Sbjct: 149 VSIHEVDAHNVVPVWEASSKLEYGARTIRSKINKLLPTYLIDFPTLTSPNQRWPSSPPDI 208 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG- 241 G + +P + + F +++ Y R+IP Sbjct: 209 DWDGLIEERIKQGAEVPEIDWCEPGETAALEVLMGEKDGFLTKRLKKYGTDRNIPLKPRA 268 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LSPYL G +S ++C E + P+S ++ RE + + P Sbjct: 269 LSGLSPYLHFGQISAQRC---ALEARQVRKLSPESVDTFLEELIVRRELADNFCYYQPHY 325 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 K W K + S + + T P+ +A+ ++ T G MH +RM Sbjct: 326 DSIKGAWDWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQMEMVTFGKMHGFMRM 385 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDLA----SNNGGWQWAASTGNDSVPY----- 405 +++ E L D ++A + G W+ G + Sbjct: 386 YWPKKILEWTNGPEEALE--IAIYLNDKYEIAGRDPNGYVGCMWSI-CGIHDQGWKERPV 442 Query: 406 ---FRIFNPTIQGKRFDPQG--TFIRHWLPE 431 R N ++FD G ++I+ + E Sbjct: 443 FGKIRYMNYAGCKRKFDVDGYISYIKKLVGE 473 >gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 467 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 112/371 (30%), Gaps = 29/371 (7%) Query: 19 RITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75 R N+AL A ++ A ++ VF + R F+ L +++ +L ++ Sbjct: 50 RTRWNEALEYAVDRANDRRAPLVVVFC---STATYPEANERHVGFMLEGLCEMRATLGKR 106 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 I F+ C+ + ++ + + +R + R + + Sbjct: 107 RIAFEAFACAPPEAALAASERAIE-------VVTDSGYLRLLRAWRDDLARRATCAVTEI 159 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + V+ G A + P A ++ + RL Sbjct: 160 ETECVVPQLGQGARRAEPSAATFRPKVLARVREFTRNACAKTVDKYERLPLERGVDACLN 219 Query: 196 FFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248 D DP P + + K + Y R+ P + S LSP+ Sbjct: 220 VLDAYGLKRDPSCPRVSSHVGGESRAKAKLDVFLTKNMLSRYHHSRNDPCLCLQSHLSPH 279 Query: 249 LSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 + G +S + + ++ D S ++ RE + P Sbjct: 280 IHYGQISVVEVARKALAFRDAHADEADICASVDVFLDELIVRRELAVNFALRNPKYDSYD 339 Query: 306 PFIPWTEKIEWNKDSHLL------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 W + + ++ G T + +A+ R+L + G HN LRM Sbjct: 340 GLPEWARETLERHRGDRREWTYTLEEFEHGRTHDKLWNASQRELVSSGKQHNYLRMYWGK 399 Query: 360 FLVKDLLVDWR 370 +++ Sbjct: 400 KILEWSSTPEE 410 >gi|283851297|ref|ZP_06368579.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B] gi|283573247|gb|EFC21225.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B] Length = 462 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 131/437 (29%), Gaps = 29/437 (6%) Query: 11 LVWLRNDLRITDNK---ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 ++W+ D R DN A + A + A+F P+ +AR + F+ L Sbjct: 22 VLWMGRDQRADDNWALLHAAALAKAAGAPLFALFALPPDF---PPATARHADFLLRGLAA 78 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V+ +L GI D + ++ + R + + + Sbjct: 79 VETALRDHGIPL----ALVPGDPAVAVPAFLRRVRAGVCVTDFDPLRPGRAAREAVATAP 134 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 D ++P + P L+ ++ A L G Sbjct: 135 VWDGALLEVDAHNVVPAFVASAKREYAAATFRPKILKLLPEFLEPFPDLPAFAAGNLAGF 194 Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 P A G + A L F +++ Y ++R+ P TS Sbjct: 195 APVDWEAARAGLVLDPSVAPVAGITPGPEAAREALAAFLADRLPAYADRRNDPNAGATST 254 Query: 245 LSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP+ G L+P R + L+ + + + + H A+ + Sbjct: 255 LSPWFHHGHLAPQRAALDALEAKKRAPAGAEAFLEELVVRRELADNYCLHEPAYDTLAAL 314 Query: 304 GKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + A ++ T + +AA RQL G +H +RM A + Sbjct: 315 PAWAQKTLGAHAADPRPYRYTAREFETAATHSALWNAAERQLVRQGRLHGYMRMYWAKKI 374 Query: 362 VKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFN 410 ++ LDG S G W+ G P+ R N Sbjct: 375 LEWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVG-GLHDRPWASRPVFGQIRYMN 433 Query: 411 PTIQGKRFDPQGTFIRH 427 ++FD +I Sbjct: 434 ARGCRRKFDVDA-YIAR 449 >gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich] Length = 200 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 10/142 (7%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYAS 64 V L W+ D R+ DN AL A + I + F P+ H ++R F+ + Sbjct: 37 KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKF---HTTTSRHFMFLISG 93 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +V + + + + RV + + R K Sbjct: 94 LKEVAEECK----RLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTV 149 Query: 125 KRLQHRVICKSFDDSVLLPPGS 146 L + D ++P Sbjct: 150 ISLPDNIPFIQVDAHNIVPCWE 171 >gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L'] gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L'] Length = 453 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 53/396 (13%), Positives = 120/396 (30%), Gaps = 29/396 (7%) Query: 16 NDLRITDNKALYAA-----CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 DLR+ DN + + +NS V+ + + + I+ RQ F+Y L + + Sbjct: 30 RDLRVYDNWSFLYSQNIAYLNNSSMYVLYL------INKNNNINIRQYKFLYEGLPEFES 83 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + + F +N ++ + ++ + + + + K+L Sbjct: 84 QCKKCNVSFHLLSYNNNII-----SNFINKYKIGHVIIEQMPLLFHKKYYLDPLKKLNVN 138 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 V + + + S + + ++ + I + Sbjct: 139 VYIVDSHNIIPVWVTSDKQEYNARTIRIKINKLKDQYLIEFPKVKISNIQPIFVENNFDI 198 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 I G N ++ + F K K+ Y ++++ P + TS LSP+L Sbjct: 199 IPNYDKKLINIYEIV----GGYTNGINRMNNFFKNKINTYKDKKNNPNYENTSILSPWLH 254 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 G++S ++C + +S I +E + + + W Sbjct: 255 CGMISAQRCVLEANKLKKIKDYNIESIDSFIEEIFIRKELSDNFCYYNNNYKSFASCPNW 314 Query: 311 TEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + G T + + L G+++ +RM A L++ Sbjct: 315 AILTLEIHKTDKRNKIFSLRELEYGKTDNKLWNYCQYYLLKFGYLNGYMRMFWAKKLIEW 374 Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 ++ DG W+ Sbjct: 375 TNSPQDAIDKTIYLNDKYFFDGYDPMGYVNILWSIG 410 >gi|332707770|ref|ZP_08427797.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L] gi|332353473|gb|EGJ32986.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L] Length = 67 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ 50 L+W RNDLRI D++ LY A A++I ++ Q+ Sbjct: 27 LIWYRNDLRIHDHEPLYQAVQE-KAQIIPLYCFDDRQFGT 65 >gi|332368588|gb|AEE61369.1| cryptochrome 3 [Oncorhynchus kisutch] Length = 50 Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425 F LLD D + N G W W + + +F + P G+R DP G +I Sbjct: 1 VFEELLLDADWSVNAGSWMWLSCS-AFFQQFFHCYCPVGFGRRTDPSGDYI 50 >gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 468 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 110/389 (28%), Gaps = 28/389 (7%) Query: 16 NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFIYASLLQVQK 70 D+R DN AL A + V+ P ++ R F+ L V Sbjct: 3 RDVRTVDNWALLFAQSLAVQQKVPLRVVYALPP----PPSMALTVRHGTFLLDGLKVVAN 58 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYC--LQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 L + + F S+ + + + ++C + + + + L Sbjct: 59 ELQEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLL 118 Query: 129 H-------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +V + + P + K++ F Q + Sbjct: 119 EGDDIPLYQVDTHNIVPVWIASPKREVGARTLRPKIHNVFGDYCCQFPKFQGNAHVKESG 178 Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 G + + F + ++ + + + + + D Sbjct: 179 AEGKGGLDWDDYESFLNMDHSVPHVGGMNAGHQVAMERFNNFCSSTQYGLKNFDSLRNDP 238 Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSP+++ G +S ++ ++ + + F + Sbjct: 239 NHQSVCSNLSPWINHGHVSFQRLALDIRALKKHTNGTAAYIEEGVVRRELSDNFVYYTPD 298 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRL 353 Y S+ + + + + + L WK+ T + +AA QL G MH + Sbjct: 299 GYDSLAGAADWARDSLTLHADDERENLYTWKELEKAETHDDLWNAAQLQLVREGGMHGFM 358 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD 382 RM A +++ L D Sbjct: 359 RMYWAKKVLEWTSSPAYALA--TAQYLND 385 >gi|86159449|ref|YP_466234.1| deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter dehalogenans 2CP-C] gi|85775960|gb|ABC82797.1| Deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter dehalogenans 2CP-C] Length = 490 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 68/427 (15%), Positives = 109/427 (25%), Gaps = 43/427 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R N AL A A V + P + S R F+ + Sbjct: 28 LHWMTSARRTRSNPALERAAELGRALGRPVLVLEPLRCGYPHASDRLHAFLLEGMRDNAA 87 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L+ + ++ + LD+ + + + RL R Sbjct: 88 ALAGR-ALYHPWVERRAGEGDGLLDALAAR--ACAVIADDFPTGFPAAAIGAAAARLDVR 144 Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181 + V G A + A + L D + P Sbjct: 145 LEAVDASCVVPFRLAGKDFPTAHAYRRHLQRALPAWLDRLPAEDPLAGVPPPGGASVPAE 204 Query: 182 ------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 + + P G A L F ++ + Y E+R+ Sbjct: 205 IRRRWPAARAAELARPAALAAALPIDHRVPPAGRGGSVAARRRLSAFLRDGLDAYAERRN 264 Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE---------- 284 P S LSP+L G L + + + A Sbjct: 265 APDEARGASGLSPWLHFGHLGSFEILRAVLRREGWTPPPVAAPARGARAGWWGLSASAEA 324 Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGYTGF 333 L WRE A P W + A T Sbjct: 325 FLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAALEAAETHD 384 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390 P+ +AA RQL G +H LRM+ +++ LDG ++ Sbjct: 385 PLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDGRDPNSVA 444 Query: 391 GWQWAAS 397 G W Sbjct: 445 GIAWCLG 451 >gi|148239607|ref|YP_001224994.1| deoxyribodipyrimidine photolyase-like protein protein [Synechococcus sp. WH 7803] gi|147848146|emb|CAK23697.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 7803] Length = 495 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 64/424 (15%), Positives = 124/424 (29%), Gaps = 53/424 (12%) Query: 21 TDNKALYAACHNSDAKVIAVFIATPEQWR---QHGISARQSHFIYA--SLLQVQKSLSQK 75 D+ AL+ + +A+ I P + Q I + + S+ ++L + Sbjct: 13 ADHPALH------KGRAVAL-IEDPLLFGTDPQWPIQVHRQRLLLHRASMTAYAETLRAQ 65 Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 G Y + ++ E L + V+ + ++ E R + + + I S Sbjct: 66 GYTVFYRRHHQASNTEEHLQALRASGFVSFYLADPVDDLLEKRLRQFVARSGGDLRILDS 125 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALI---------------QNLVQADLRSLPVP 180 + + + Q AD R Sbjct: 126 PMLLTPASMVEEHFAGGRKPFMAKFYEHQRRRMGLLLDDNGGPLGGQWSFDADNRKKLPK 185 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 I + + P ++ + D Sbjct: 186 GISVPSEPCHHGDAEIDQARRELETETLPFIGNWDFFSYPIRHEDADRWLQIFLDQRFRD 245 Query: 241 ---------------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 S L+P L++G+L+P+Q +R E D I S + Sbjct: 246 FGAYEDAISTQHRVMWHSVLTPMLNVGLLTPQQVIDRTLERAADGDIPLNSLEGFIRQIV 305 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 WREF + + F + ++ + A+ G TG P +D A+ Sbjct: 306 GWREFMAVMYRRHGVAMRKSNFWEFEDRP-------IPDAFYTGTTGLPPVDDAIHHALA 358 Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNN-GGWQWAASTGND 401 G+ H+ R++ ++ + ++FM +D D N G Q+A Sbjct: 359 HGYCHHIERLMLLGNIMLLCGFHPQRVYQWFMELFVDAYDWVMVPNVFGMSQFADGGLFT 418 Query: 402 SVPY 405 + PY Sbjct: 419 TKPY 422 >gi|87124470|ref|ZP_01080319.1| photolyase protein family protein [Synechococcus sp. RS9917] gi|86168042|gb|EAQ69300.1| photolyase protein family protein [Synechococcus sp. RS9917] Length = 482 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 62/410 (15%), Positives = 122/410 (29%), Gaps = 37/410 (9%) Query: 21 TDNKALY--AACHNSDAKVIAVFIA--TPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 D+ L A + ++ P Q ++ SL ++ L G Sbjct: 14 ADHPGLAPGRAVVLVEEPLL----LGTDPSWPLQLH--PQKLALHRHSLEAYRRRLETAG 67 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + + + + L Q + + E R + + + Sbjct: 68 HPVRLQRHDQAASTDDHLALLLAQGVRHLHLVDPVDDWLERRIRRWSAREGLRLTWYATP 127 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------------QADLRSLPVPA 181 + G+ + + + + + V AD R Sbjct: 128 MLLTPVEEGAAFLARGKKPSMARFYERQRRRLGVLIDPQGQPVGGRWSFDADNRKKLPKQ 187 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240 I+L P + P+ G + L ++ Y + Sbjct: 188 IQLPPNPLHPLGADPQADPETCLVPIDHSGAERWLDAFLAQRLQQFGAYEDAISREHHVL 247 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S L+P L+IG+L+P+Q +R + S + WREF + + Sbjct: 248 WHSVLTPMLNIGLLTPQQVLDRTLARAEAGDVPHNSLEGFVRQIIGWREFMALMYRHHGV 307 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F ++ + +A+ G TG P IDA ++++ G+ H+ R++ Sbjct: 308 TLRNGNFWGLEDRP-------IPEAFSTGDTGLPPIDAVIQRVRRSGYCHHIERLMLLGN 360 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 ++ +FM LD D + G Q+A + PY Sbjct: 361 VMLLCGFHPTRICNWFMELFLDAYDWVMVPNVYGMSQFADGGLFTTKPYV 410 >gi|86137238|ref|ZP_01055816.1| photolyase protein family protein [Roseobacter sp. MED193] gi|85826562|gb|EAQ46759.1| photolyase protein family protein [Roseobacter sp. MED193] Length = 497 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 125/426 (29%), Gaps = 54/426 (12%) Query: 21 TDNKALYAACHNSDAKVI---AVFIATPEQWRQHGISARQSHFIYA-SLLQVQKSLSQKG 76 D+ AL + V+ +F P+ + RQ +++ S+ Q++L + G Sbjct: 14 ADHPALLDPVRDV---VLFEDPLFFGDPQYPARMH---RQKLWLHRASMAHYQQALVKLG 67 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-------LQH 129 + + + + + L +Q +T + + +R + L Sbjct: 68 LNAKIIPYDPQNGACQRLFQNLKEQGITTMVMADPVDFIAEQRIQESADATGIKLEVLPS 127 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 S + + G + YK L++N + R P Sbjct: 128 PGFLNSPEHNHEWYRGRKRWLMAEFYKAQRRRLDVLMENDKPLGGKWSLDTENRKKVPKA 187 Query: 190 PSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 ++P + IG L+ ++ R Sbjct: 188 LLENLPLIEWPVHDDIDAVAKARVLSEFPHTIGSLEQLYYPTTQASAAAWFDQFLRQRFD 247 Query: 239 --------------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + L+P L+IG+L+PRQ + I S Sbjct: 248 RFGDFEDAIVAGESWLWHAMLTPVLNIGLLTPRQVLDTTLAYAERKDIPLNSLEGFLRQI 307 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 + WREF R A + ++ G TG +D ++++ Sbjct: 308 IGWREFMRATYADLGVTMRQTNHWGHHRPMPK--------SFYSGTTGIAPLDDTIQRVL 359 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGN 400 G+ H+ R++ + +D +FM +D D + Q A Sbjct: 360 ATGYCHHIERLMVLGGFMFLCEIDPDAVYRWFMEMFVDSYDWVMVPNVYAMSQHADGGLI 419 Query: 401 DSVPYF 406 + PYF Sbjct: 420 TTKPYF 425 >gi|302834309|ref|XP_002948717.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f. nagariensis] gi|300265908|gb|EFJ50097.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f. nagariensis] Length = 751 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%) Query: 11 LVWLRNDLRITDNKALYA-----------ACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 ++W RNDLR+ D+ L A S + VF+ P + + Sbjct: 76 VLWYRNDLRVDDHPGLTAAAVAVGAAGPSGTSASPRPLAPVFLLDPVRLSYLAFTPGGPE 135 Query: 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + A+L +++ L +G S Sbjct: 136 ALSAALERLRAELRVRGSDLAIRVGSWEQQLTAV 169 >gi|15824993|gb|AAL09564.1|AF363633_1 cryptochrome 2 [Coturnix japonica] Length = 49 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59 W R LR+ DN AL AA + A + ++I P + + Sbjct: 3 HWFRRGLRLHDNPALQAALRGA-ASIRCIYILDPWFAASSAVGINRWR 49 >gi|172037665|ref|YP_001804166.1| putative deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC 51142] gi|171699119|gb|ACB52100.1| putative Deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC 51142] Length = 501 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 51/388 (13%), Positives = 115/388 (29%), Gaps = 34/388 (8%) Query: 24 KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 AL + C N+ + +FI + ++ ++ +++++ + LS +G Y Sbjct: 17 AALLS-CKNNKQETPVIFIESHNYIQKRPYHQQKLVLVFSAMRHFAEELSSQGWQVSYKV 75 Query: 84 CSNFDDSIE------WLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKS 135 +F+ ++ + + + F R + + L K Sbjct: 76 AHDFESALNNWIKENKITELRVVSPCDRPFLRRIQSFKLDCKTKFISNNHFLWSNEEFKQ 135 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 ++DS + I + D ++ P L P P Sbjct: 136 WNDSRKRLLLEDFYREGRKRFNILMDEDQPIGDKWNFDKQNRKPPKQNLNPPTPLWFEPD 195 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRK-----------------FCKEKVYYYVEQRDIPA 238 + I + + Y Sbjct: 196 AITEQVIKDIKSYKIASYGKIEPFKWGVTRSQALQVLDHFLENNLNNFGAYQDAMITGEY 255 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S +SPY+++G+L+P + ++++ + + S L WRE+ + Sbjct: 256 TMWHSLISPYINLGLLTPLEVIQKIEKAYHEFDYPLNSVEGLIRQILGWREYMYGIYQLM 315 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K + E + W T + ++Q+ G+ H+ R++ Sbjct: 316 DDDYRDKNWFDHQENLPAFY-------WDSSQTDMNCLKQILQQVEETGYAHHIQRLMVL 368 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 S + V + ++F S +D D Sbjct: 369 SNFALIIGVSPQAINDWFHSAFIDGYDW 396 >gi|331227642|ref|XP_003326489.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305479|gb|EFP82070.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 251 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 4 TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63 ++ +S L W DL + D+ AL A ++ V+ P + + F++ Sbjct: 2 SSKLSKLLYWFWTDLHVHDSPALIKALELGRVELYPVWCWDPYYIYNTPVGPNRWQFLFQ 61 >gi|71083008|ref|YP_265727.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062121|gb|AAZ21124.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1062] Length = 496 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+++G+++P ++ E I+ S + WREF R + Y Sbjct: 262 FHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWREFMRGIYQGYSD 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K F + ++W +G TG P +D A++ GW H+ R++ S Sbjct: 322 EMETKNFFNHER--------KMKKSWYEGTTGLPPLDHAIKNAVNHGWSHHIERLMILSN 373 Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382 ++ V I ++FM +D Sbjct: 374 IMNLCEVKPTIVYKWFMEMFVD 395 >gi|116074855|ref|ZP_01472116.1| photolyase protein family [Synechococcus sp. RS9916] gi|116068077|gb|EAU73830.1| photolyase protein family [Synechococcus sp. RS9916] Length = 495 Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 82/263 (31%), Gaps = 12/263 (4%) Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 Q + V + +P + L + + Y Sbjct: 190 PQEPTCTPFVDHATTLAQLETEALPLIGVSKDCLYPIDHQGAQDWLDRFLEERFEHFGDY 249 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + L+P L+IG+L+P Q R E I S + WRE Sbjct: 250 EDAISRHHRVMWHGVLTPMLNIGLLTPEQVLRRALEAGESRSIPLNSLEGFVRQIIGWRE 309 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F + + F + + L +A+ G TG P ID A+ GW Sbjct: 310 FMASMYQRHGRQMRTTNFWGFNNQP-------LPEAFYTGTTGLPPIDDAIHHALETGWC 362 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 H+ R++ ++ ++FM +D D N G Q+A + PY Sbjct: 363 HHIERLMLIGNVMLLCRFHPDRVYQWFMDLFVDAYDWVMVPNVYGMSQFADGGLFTTKPY 422 Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428 N + + P+G + W Sbjct: 423 LSGSNYVRKMSDY-PKGDWCDIW 444 >gi|71403553|ref|XP_804566.1| DNA photolyase [Trypanosoma cruzi strain CL Brener] gi|70867603|gb|EAN82715.1| DNA photolyase, putative [Trypanosoma cruzi] Length = 398 Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 14/116 (12%) Query: 16 NDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64 ND+R+ DN L A VIAV + + Q S ++ F S Sbjct: 227 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 286 Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 L +++ ++ + E + ++ T +F QY +E Sbjct: 287 LAKLRATIEE---ELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 339 >gi|54780882|gb|AAV40607.1| cryptochrome 2 [Erithacus rubecula] Length = 128 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 6/45 (13%) Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 P + + K + ++YP P+V+H + + + +Q Sbjct: 1 EPWNAPESVQKEAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 45 >gi|169656793|ref|YP_001715625.1| hypothetical protein FTA_2149 [Francisella tularensis subsp. holarctica FTNF002-00] gi|164551861|gb|ABY60985.1| hypothetical protein FTA_2149 [Francisella tularensis subsp. holarctica FTNF002-00] Length = 49 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%) Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA 43 M + + W R DLR+ DN ALY + I +FI Sbjct: 1 MSKK----IAIHWFRQDLRLADNPALYQVSQADET--ITIFIL 37 >gi|323449922|gb|EGB05806.1| hypothetical protein AURANDRAFT_30135 [Aureococcus anophagefferens] Length = 73 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 W +G TG+P +DA MRQL G M + LR + A+FLV+DL V WR G E+F + LLD Sbjct: 4 KWTRGATGYPFVDAGMRQLAAEGRMPHLLRQLCAAFLVRDLRVPWRWGAEWFEAHLLDHA 63 Query: 385 LASNNGGWQW 394 +N G W + Sbjct: 64 PDANYGNWGY 73 >gi|166365313|ref|YP_001657586.1| deoxyribodipyrimidine photolyase-related protein [Microcystis aeruginosa NIES-843] gi|166087686|dbj|BAG02394.1| deoxyribodipyrimidine photolyase-related protein [Microcystis aeruginosa NIES-843] Length = 507 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 97/380 (25%), Gaps = 35/380 (9%) Query: 32 NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 + VI I + RQ ++ FI++++ + L G Y +F+ + Sbjct: 26 AQETPVIL--IESHNHIRQRPYHQQKLVFIWSAMRHFAEELKTLGWSVTYEVAEDFEPIL 83 Query: 92 EW-------------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR------ 126 + R Sbjct: 84 SAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCPITLIDNNHFLWTRTDFNNWAKSRKRL 143 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 L +S +L + + +++ Sbjct: 144 LLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTAAPLWFEPDEITLQVIA 203 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 V +IP++ Q H + Y S LS Sbjct: 204 DVEALDIPKYGKIKPFRWAVTRRQALQVLEHFITNCLPNFGPYQDAMITGEETLWHSLLS 263 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+L+P + + + + S L WRE+ + + + + Sbjct: 264 PYLNLGLLTPLEVIQGAEIAYKKDNLALNSIEGFIRQVLGWREYMQGIYHYLGEDYANRN 323 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + W T + + Q+ G+ H+ R++ S Sbjct: 324 WFEHQQPLPAFF-------WDSNQTEMNCLKQVLSQVENTGYAHHIQRLMILSNFALIFG 376 Query: 367 VDWRIGEEYFMSQLLD-GDL 385 + E +F S +D D Sbjct: 377 CSPQEIENWFHSVFIDAYDW 396 >gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622] gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622] Length = 488 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 61/406 (15%), Positives = 110/406 (27%), Gaps = 24/406 (5%) Query: 15 RNDL---------RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 R D R N AL AA + + V + + S R + + Sbjct: 29 RRDFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIRPDYPHASDRLHAWALEGM 88 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT----KLFYNRQYEINEVRRDK 121 + + + +G+ + + L + Y + + Sbjct: 89 MDMATGCAARGLPYWLELPRTSKEHRPRLAQLGRRAAAIVSDLFPTYIIPGHLRGAAKAL 148 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180 + G+ +A+ V+A + P Sbjct: 149 DVPLFAVDASCVVPMQRIATRQIGAYTLRPKLKKLWPEYLDRAVPNRAVKAAAAGRKLEP 208 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + FD+ G + L L+ F +++ Y E R+ P + Sbjct: 209 DFATSDARESRESLDAFDFDHSVAPIQERGGRKAGLDALQAFVHQRLEGYDEGRNDPGLA 268 Query: 241 GTSQLSPYLSIGVL--SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP+ G L D ++ EL + + Sbjct: 269 RQSNLSPFFHWGNLFAGEAARAAIRARGAQDASVQGFLEELLVRRELGFNYCFHTPGPQQ 328 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRM 355 SV P+ T + KQ T + +AA R+L G +HN LRM Sbjct: 329 LSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTADGLWNAAQRELVERGRIHNYLRM 388 Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDG-DLASNNGGWQWAAS 397 + +++ + +DG D AS + W Sbjct: 389 LWGKKILEWTPSPQEALQRIAFLNDKYAVDGRDPAS-VANFMWVLG 433 >gi|78184690|ref|YP_377125.1| photolyase family protein [Synechococcus sp. CC9902] gi|78168984|gb|ABB26081.1| photolyase protein family [Synechococcus sp. CC9902] Length = 505 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 11/175 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + L+P L+IG+L+PRQ +R E I S + WREF + Sbjct: 266 YHRVMWHGVLTPMLNIGLLTPRQILDRTLEYSKKNDIPLNSLEGFIRQIIGWREFMAVMY 325 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F + ++ + A+ G TG P ID A++ G+ H+ R+ Sbjct: 326 RRHGVEMRNSNFWEFEDRP-------IPDAFYTGNTGLPPIDDAIKHALQTGYCHHIERL 378 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + +++ +FM +D D N G Q+A + PY Sbjct: 379 MLVGNIMQLCGFHPNRVYVWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 433 >gi|213422521|ref|ZP_03355587.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 102 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 44/66 (66%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 ++ RQ+ FI A L +Q +L++KGI +H+ ++F+ SIE + + C Q V+ LFYN QY Sbjct: 1 MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60 Query: 113 EINEVR 118 E NE + Sbjct: 61 EFNERQ 66 >gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila PT] gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta thermophila PT] Length = 114 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 34 DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 +A + VF P+ G R F+ L ++++ LS GI F + D Sbjct: 6 NASLAVVFCLAPQF---PGAGDRSYRFMLDGLRELEQRLSSLGIAFIF----THGDPGNV 58 Query: 94 LDSYCLQQRVTKLFYNR 110 + L + Sbjct: 59 IPEIIDDSGAGMLIADF 75 >gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii] Length = 506 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 64/469 (13%), Positives = 126/469 (26%), Gaps = 80/469 (17%) Query: 11 LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50 + W+ D R+ DN AL+ R Sbjct: 41 VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALF--------------------PRP 80 Query: 51 HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 +SAR+ F+ L ++ + + + F + + + + + L Sbjct: 81 FLLSARRRQLGFLLRGLRRLAADAASRHLPFFLFTGGPAE-----IPALVRRLGASTLVA 135 Query: 109 NRQYEINEVRRDKLLEKRLQ-----------HRVICKSFDDSVLLPPGSILNHALQMYKV 157 + + L+ + S ++ KV Sbjct: 136 DFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKV 195 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + + + + +P + L Sbjct: 196 MDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLG 255 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 F +++ Y R+ P S LSPYL G +S ++C E + PKS Sbjct: 256 SKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRC---ALEAKKCRHLSPKS 312 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGY 330 ++ RE + + P W K + + + Sbjct: 313 VDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAK 372 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387 T P+ +A+ ++ G MH +RM A +++ +DG S Sbjct: 373 THDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPS 432 Query: 388 NNGGWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427 G W+ +D P F R N ++FD ++++ Sbjct: 433 GYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481 >gi|113955504|ref|YP_730566.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] gi|113882855|gb|ABI47813.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. CC9311] Length = 468 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 62/358 (17%), Positives = 115/358 (32%), Gaps = 14/358 (3%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 R+ S+L QK L KG + + L+ T N ++ Sbjct: 45 PRKLQLHQESMLAYQKHLELKGFSVFTLTPKQNQQTSDLLNQLVDSGYKTFYLVNPIDDL 104 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 R LE+R + + + + + ++ + V D Sbjct: 105 LSKRVRNTLERRHCVLNVLPTPMLLTPTEVMDEHFNGRRKPMMANFYQMQRKRLGVLIDD 164 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYV 231 + PV +P+ + P + + +Q L + + Sbjct: 165 QGAPVGGRWSYDADNRKKLPKGINVPEEPSIDLPVDHRSAKQWLDTFLEQRLSGFGTFED 224 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + S L+P L++G+L+P+Q N+ I S + WREF Sbjct: 225 AISSKHRVMWHSVLTPMLNLGLLTPQQVLNQTLAVAETSEIPLNSLEGFLRQIIGWREFM 284 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + F + ++ + A+ QG TG P ID A+++ G+ H+ Sbjct: 285 AAMYLRHGVTMRNSNFWNFDDRP-------IPDAFYQGTTGLPPIDDAIKRALNTGYCHH 337 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 R++ ++ +FM +D D N G Q+A S PY Sbjct: 338 IERLMLLGNIMLLCGFHPTRIYTWFMELFVDAYDWVMVPNIYGMSQFADGGIFTSKPY 395 >gi|213983211|ref|NP_001135721.1| CPD photolyase-like [Xenopus (Silurana) tropicalis] gi|197246287|gb|AAI69177.1| Unknown (protein for MGC:189672) [Xenopus (Silurana) tropicalis] Length = 157 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ D R+ DN A A + + + + F P+ R F+ L + Sbjct: 94 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDAT---IRHYGFMVKGLQE 150 Query: 68 VQKSL 72 V + L Sbjct: 151 VAEVL 155 >gi|238603470|ref|XP_002395956.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553] gi|215467586|gb|EEB96886.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553] Length = 114 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 ++ + G I ++ AWK+G TGFP IDA MRQL GW+H+ Sbjct: 1 YIDWHLQNQYDGDGKIIVPRPRGESQAEDRFLAWKEGRTGFPWIDAIMRQLRQEGWIHHL 60 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390 R A FL + + W G E F L+D D SN G Sbjct: 61 ARHSVACFLTRGQCYISWERGAEVFDEYLIDWDPCSNPG 99 >gi|91762569|ref|ZP_01264534.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718371|gb|EAS85021.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Pelagibacter ubique HTCC1002] Length = 445 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+++G+++P ++ E I+ S + WREF R + Y Sbjct: 211 FHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWREFMRGIYQGYSH 270 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K F + ++W +G TG +D A++ GW H+ R++ S Sbjct: 271 EMETKNFFKHNR--------KMKKSWYEGTTGLLPLDYAIKNAVNHGWSHHIERLMILSN 322 Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382 ++ V ++FM +D Sbjct: 323 IMNLCEVKPTTVYKWFMEMFVD 344 >gi|262277789|ref|ZP_06055582.1| photolyase protein family protein [alpha proteobacterium HIMB114] gi|262224892|gb|EEY75351.1| photolyase protein family protein [alpha proteobacterium HIMB114] Length = 494 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 51/362 (14%), Positives = 112/362 (30%), Gaps = 48/362 (13%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTK-------- 105 + F +S+ + L Q G YH+ + DD ++ L + +++ Sbjct: 44 KITFFLSSMRSFKDELEQVGYKVIYHKIEDKEFKDDYVKKLANVIKNKKIKNVNFFEIED 103 Query: 106 ------------------------LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141 +F + + + I ++ + ++ Sbjct: 104 KPFEKKIVSYLKKEKVDYKILKTPMFLSSRDDFISYLGKSKKPFMANFYKIQRTKFNILM 163 Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYP 200 GS I+ Q + ++ P + Sbjct: 164 NKDGSPKGGKWSFDSENRKKLPKDIKLPKQPIFKETEHTKKLKKIINEKFPKHPGDTNQF 223 Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260 + + + V+QRD S LSP+++ G ++P++ Sbjct: 224 WIGTTRKDAKLVLDNFLKDKLKLFGDYEDAVDQRDNILFH--SALSPFINNGSITPQEIL 281 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 + L + + I G + WREF R + + F +N + Sbjct: 282 DELTKFEKKVSINSYEGY--LRQVIGWREFMRGIYQNFDDKMQKSNF--------FNHKN 331 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 + +W +G TG +D A++ W H+ R++ S ++ ++ R ++FM Sbjct: 332 KMKNSWYEGTTGLDPLDHAIKNAKDYAWSHHIERLMILSNIMNLCEIEPRQVYKWFMEMF 391 Query: 381 LD 382 +D Sbjct: 392 MD 393 >gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068] Length = 502 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 121/431 (28%), Gaps = 47/431 (10%) Query: 11 LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W R R + N +L A + + I + R S R FI + Sbjct: 25 LYWMIAFRR--RRS-NFSLQRAVEWARELRKPLVILEAVRTRYEWASDRLHRFIIEGMQD 81 Query: 68 VQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQR--VTKLFYNRQYEINEVRRDKL 122 L + G+V+ + L++ + +T F + Sbjct: 82 NAHDLGELRQSGVVYHPYVEPTHGAGAGLLEALAKRAAVVITDDFPCFFLPQMTKVAARK 141 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + R++ ++ H + + A + L + +PA+ Sbjct: 142 VPVRMETIDGNGILPMRAADKTFTMAFHFRRWLQKNLKPHLAEEAFPEEDPLARVKLPAL 201 Query: 183 RLTGPVTPSNIPRFFDYP------------FQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + P ++ P +G + + + + Sbjct: 202 KKLPAEITERWPAADFKQLLGARGLAQLPIDHSVTPTSEVGGAASAARVLERFLDSRLSR 261 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSP---------RQCWNRLKEEFVDLLIKPKSGAFSW 281 +R+ P S LSP+L G +S R+ W+ K S Sbjct: 262 YGERNEPDANAASGLSPWLHFGHVSVHDIARRALARESWSHAKLSAKTDGKAGAWWGVSA 321 Query: 282 LNE------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ------AWKQG 329 E + WRE + + + + W +K ++ Sbjct: 322 ACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTLDKHAVDPRPNLYTLDQFESS 381 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLA 386 T + +AA RQL G +HN +RM+ +++ LDG Sbjct: 382 TTHDLLWNAAQRQLVREGRIHNYMRMLWGKKILEWSTSPREALRIMIQLNNKYALDGRNP 441 Query: 387 SNNGGWQWAAS 397 ++ G W Sbjct: 442 NSYSGIFWILG 452 >gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299] gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299] Length = 645 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%) Query: 23 NKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIV 78 N AL A D ++AVF + R F+Y L++++++L +G+ Sbjct: 137 NDALEYAVQRANEHDVPLVAVF---GSTAGFPHANERHLAFMYQGLVELRETLERTRGVQ 193 Query: 79 FQYHQCSNFDDSIEWL 94 + + E + Sbjct: 194 LLAYTPVGGGEPGEVI 209 >gi|331239782|ref|XP_003332543.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311533|gb|EFP88124.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 68 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62 M++ W DLR+ ++ AL A ++ V+ P + + F+ Sbjct: 1 MTLSRFW--TDLRVHESPALIKALELGPVELYPVWCWDPYYIYNTPVGPNRWQFLL 54 >gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase) [Plasmodium chabaudi chabaudi] gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA photolyase), putative [Plasmodium chabaudi chabaudi] Length = 368 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 34/313 (10%), Positives = 96/313 (30%), Gaps = 11/313 (3%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ + I F D+ +E+L + + ++ + + + Sbjct: 31 LKNLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IQEIKTVVCDFHPLEYQKQFVENLVHM 88 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + + + +++ + + + L L++ I+ Sbjct: 89 SNKKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIEYIKLERFDQTIKY 148 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTS 243 P ++ + + + + + + +R+ P + Sbjct: 149 PEPFDIESLYKKLTVNNSCSVISDFVCTEKKARDVLEDFCKNKLDKYGVKRNDPNYDTIN 208 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSV 301 L PY+++G++S ++C + + + S + N+ LI +E + + + Sbjct: 209 LLMPYINLGIISSQRCILEVNKYALQFPSIHTSSGKEYFNDDLLIKKELADNFCYYNKNY 268 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 W ++ + ++ T I + QL G +H LRM Sbjct: 269 DNFNGAKDWAKESLKKHELDKRSHLYDYEDFRNARTHNDIWNCCQLQLVNEGTIHEFLRM 328 Query: 356 ITASFLVKDLLVD 368 A ++ Sbjct: 329 YWAKKILNWSENS 341 >gi|159028913|emb|CAO90718.1| phr2 [Microcystis aeruginosa PCC 7806] Length = 516 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 44/380 (11%), Positives = 100/380 (26%), Gaps = 35/380 (9%) Query: 32 NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 + + VI I + RQ ++ I++++ + L G Y +F + Sbjct: 26 SQETPVIL--IESHNHIRQRPYHRQKLVLIWSAMRHFAEELKTLGWSVTYEVTEDFGPIL 83 Query: 92 E-WLDSY-CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149 W+ + ++ + + + + + D Sbjct: 84 SAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCAVTLIDNNHFLWTRTDFNNWAKSRKRL 143 Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--- 206 Y+ + L++N + R + P + Sbjct: 144 LLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTTAPLWFEPDKITLQVIA 203 Query: 207 ------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--------------GTSQLS 246 + G+ + + S LS Sbjct: 204 DVEALDIPKYGKIKPFRWAVNRRQALQVLEHFITNCLPNFGTYQDAMVTGEETLWHSLLS 263 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+L+P + + + S L WRE+ + + + Sbjct: 264 PYLNLGLLTPLEVIQGAAIAYKKDNLALNSIEGFIRQVLGWREYMQGIYHYLGEDYANHN 323 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + W T + + Q+ G+ H+ R++ S Sbjct: 324 WFEHQQPLPAFF-------WDSNQTEMNCLKQVLSQVENTGYAHHIQRLMILSNFALIFG 376 Query: 367 VDWRIGEEYFMSQLLD-GDL 385 + E +F S +D D Sbjct: 377 CSPQEIENWFHSVFIDAYDW 396 >gi|282896501|ref|ZP_06304521.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9] gi|281198607|gb|EFA73488.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9] Length = 511 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 47/390 (12%), Positives = 111/390 (28%), Gaps = 34/390 (8%) Query: 23 NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 + AL +I I + ++ ++ +++++ + L Q+G Y Sbjct: 16 HPALQELTIKRHQISIIL--IESMAYAQERPYHRQKLVLVWSAMRHFARELGQQGWQVTY 73 Query: 82 HQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 + F ++ + + + + L + + + Sbjct: 74 EIAAEFSSALTNWQQTHNITELWIMEPGDRPFIQFINQLNLTCSIHWLPNNLFLWKESEF 133 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 G Y+ L++ + R + ++ + Sbjct: 134 TQWARGRKRLLLEDFYREGRKRFNVLMKEGKPVGGQWNLDKQNRKPPKKSLASPSALWFP 193 Query: 200 PFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------------ 240 P + FP G + + + + Sbjct: 194 PDPTTQEVITHVRNHFPHGYGEVDTFKWAVTRSQSRRVLSHFLETHLPDFGPYQDAMVTG 253 Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSPYL++G+L P + ++EE+ + S L WRE+ R + Sbjct: 254 EDTLWHSLLSPYLNLGLLHPMEVIQAVQEEYNKHQLNLNSVEGFIRQILGWREYMRGVYM 313 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + W + + G T + + Q++ G+ H+ R++ Sbjct: 314 YESKRDLNYTQRNWFDHNQPLPHWFW-----TGITDLNCLHQTLEQIHRTGYAHHIQRLM 368 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 S L + ++F + +D D Sbjct: 369 LLSNFNLVLGTSPQSVVDWFHAVFIDAYDW 398 >gi|116070558|ref|ZP_01467827.1| photolyase protein family [Synechococcus sp. BL107] gi|116065963|gb|EAU71720.1| photolyase protein family [Synechococcus sp. BL107] Length = 495 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 11/175 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + L+P L+IG+L+PRQ +R E I S + WREF + Sbjct: 256 HHRVMWHGVLTPMLNIGLLTPRQILDRTLECADKNNIPLNSLEGFIRQIIGWREFMAVMY 315 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F + ++ + A+ G TG P ID A++ G+ H+ R+ Sbjct: 316 RRHGVEMRNGNFWQFEDRP-------IPDAFYTGTTGLPPIDDAIKHALQTGYCHHIERL 368 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 + +++ +FM +D D + G Q+A + PY Sbjct: 369 MLLGNMMQLCGFHPNRVYVWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 423 >gi|294888807|ref|XP_002772597.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239876941|gb|EER04413.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 198 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 + W+ ++R DN AL A S ++ V+ G RQ F L Sbjct: 28 IYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLA---VGYLGGGLRQHAFKVGGLKV 84 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 V +LSQ I F F + + + V F + V KRL Sbjct: 85 VAANLSQLNIPFAIEASPKFPAFLADITERVGCKYVVTDFTPLRLNKEWVAAFTKHAKRL 144 Query: 128 QHRVICKSFDDSVLLPPGSILN 149 R + V S Sbjct: 145 DIRFELVDAHNVVPCWVTSDKM 166 >gi|325285638|ref|YP_004261428.1| deoxyribodipyrimidine photolyase-like protein [Cellulophaga lytica DSM 7489] gi|324321092|gb|ADY28557.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga lytica DSM 7489] Length = 494 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 12/170 (7%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S L+P L++G+++P++ ++ + + S + WREF R + + Sbjct: 261 NHSVLTPMLNVGLITPKEIIDKALDYAKTNNVPINSTEGFVRQIIGWREFIRGMYITRGA 320 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +T KI ++ G TG P ID +++L G+ H+ R++ S Sbjct: 321 EERTTNYWKFTRKIPA--------SFYNGTTGIPPIDQTIKKLLQTGYCHHIERLMVLSN 372 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q+A + PY Sbjct: 373 FMLLCEFNPDEVYQWFMELFIDSYDWVMVPNVYGMSQFADGGLMATKPYI 422 >gi|254456383|ref|ZP_05069812.1| photolyase protein family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083385|gb|EDZ60811.1| photolyase protein family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 469 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 8/142 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPY+++G+++P ++ + I+ S + WREF R + Y Sbjct: 235 FHSALSPYINLGLITPELIIQKILDFHKKNKIRMNSLEGYIRQVIGWREFMRGIYQGYSE 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + +W G TG P +D A++ GW H+ R++ S Sbjct: 295 KMETGNFFKQNR--------KMKNSWYVGTTGLPPLDYAIKNAVNHGWSHHIERLMILSN 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLD 382 ++ + I ++FM +D Sbjct: 347 IMNLCEIKPTIVYKWFMEMFVD 368 >gi|238592825|ref|XP_002393022.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553] gi|215459875|gb|EEB93952.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553] Length = 74 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 7 MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57 MS H L W R DLR+ + AL+AA + ++ PE H + + Sbjct: 1 MSKHRVLYWFRTDLRLHSSPALHAALSLQPEALYPIWTWDPEYVYAHRVGVNR 53 >gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis] Length = 506 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 59/466 (12%), Positives = 121/466 (25%), Gaps = 74/466 (15%) Query: 11 LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50 + W+ D R+ DN AL+ R Sbjct: 41 VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALF--------------------PRP 80 Query: 51 HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 +SAR+ F+ L ++ + + + F + + + + + L Sbjct: 81 FLLSARRRQLGFLLRGLRRLAADATARHLPFFLLTGGPAE-----IPALVRRLGASTLVA 135 Query: 109 NRQYEINEVRRDKLLEKRLQ-----------HRVICKSFDDSVLLPPGSILNHALQMYKV 157 + + L+ + S ++ KV Sbjct: 136 DFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKV 195 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 + + + + +P + L Sbjct: 196 MDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAMEALLG 255 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + +++ Y R+ P S LSPYL G +S ++C K+ + Sbjct: 256 SKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKRRHLSPKSIDA 315 Query: 277 GAFS--WLNELIWREFYRHLMAFYPSVCM-GKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 EL Y S + + + + + T Sbjct: 316 FLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREHLENAKTHD 375 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNG 390 P+ +A+ ++ G MH +RM A +++ +DG S Sbjct: 376 PLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGFV 435 Query: 391 GWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427 G W+ +D P F R N ++FD ++++ Sbjct: 436 GCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481 >gi|67920062|ref|ZP_00513582.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera watsonii WH 8501] gi|67857546|gb|EAM52785.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera watsonii WH 8501] Length = 501 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 46/388 (11%), Positives = 112/388 (28%), Gaps = 34/388 (8%) Query: 24 KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 AL + C + + + I + + ++ ++ +++++ + L +G Y Sbjct: 17 AALLS-CQDDKQETHVILIESHDYIKKRPYHQQKLVLVFSAMRHFAEELKTQGWTVTYEI 75 Query: 84 CSNFDDSI-EWLDS-------YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 +F+ + +W+ + ++++ + L + K Sbjct: 76 SQDFETPLNDWIKKNKITELRLVTPYDKPFSSRVKSFKLDCKIKLIPNNHFLWTQEEFKQ 135 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + DS + I D ++ P L P P Sbjct: 136 WTDSRKRLLLEDFYREGRKRFNILMEDNQPIGGKWNFDKQNRKPPKKGLNPPTPLQFEPD 195 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRK-----------------FCKEKVYYYVEQRDIPA 238 + I + + Y Sbjct: 196 KITQQVIKDIKSYKIPTYGKIKPFKWAVTRSQALQVLDNFIEHNLNNFGTYQDAMITGEY 255 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S +SPY+++ +L+P + +++ + + S L WRE+ + Sbjct: 256 TLWHSLISPYINLSILTPWEVIKSIEKAYYEFDYPLNSVEGLIRQILGWREYMYGIYKIM 315 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K + EK+ W T + +++Q+ G+ H+ R++ Sbjct: 316 DDDYAQKNWFNHQEKLPEFY-------WDSSQTDMNCLKQSLQQVEETGYSHHIQRLMVL 368 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 + V + ++F S +D D Sbjct: 369 GNFALIVGVSPQAVNDWFHSAFIDAYDW 396 >gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex] Length = 92 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112 + + F+ SL + +L + G + S E Y + + KL + + Sbjct: 4 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKES----PTEMFKKYFKEWNIKKLTFEVEI 59 Query: 113 EINEVRRDKLLEKRLQHR 130 E +D+ ++K H Sbjct: 60 EPYAKTQDEEIKKLADHH 77 >gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex] Length = 179 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%) Query: 53 ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 + + F+ SL + +L + G + S E Y + + K Sbjct: 13 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKES----PTEMFKKYFKEWNIKK 61 >gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium] Length = 150 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 9/76 (11%) Query: 44 TPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 P + + ++ F+ S+ ++K+L +G L Sbjct: 1 DPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPETVLVELA 56 Query: 99 LQQRVTKLFYNRQYEI 114 ++ +R+ Sbjct: 57 KAVGAEAVYAHREVSH 72 >gi|183221861|ref|YP_001839857.1| putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911933|ref|YP_001963488.1| deoxyribodipyrimidine photolyase-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776609|gb|ABZ94910.1| Deoxyribodipyrimidine photolyase-related protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780283|gb|ABZ98581.1| Putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 499 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 55/376 (14%), Positives = 121/376 (32%), Gaps = 41/376 (10%) Query: 40 VFIA-TPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSY 97 VFI E + ++ F + ++ + L G Y +S E ++ Sbjct: 29 VFIREDNELCTYYRFHKQKILFFFLAMRAYAEELKSLGFFVHYEHYDPNSESYENQFLNF 88 Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 + ++ + + R ++ + I + Sbjct: 89 IQVNNIQEIHFFEIEDTFFETRMLSCFQKTGIKWIQHKSPMFLTSRNDFKAYLQTHKKPF 148 Query: 158 YTPFRKALIQNL------------------------VQADLRSLPVPAIRLTG---PVTP 190 F +A + + + + +P I+ + Sbjct: 149 MKTFYEAQRKTFNILLNEKSEPIGGKWSFDSENRKKLPKNYCAPNLPKIKFSKNEIKTFD 208 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246 + F ++P D P + A L+ F KE+ + D ++ S L+ Sbjct: 209 TVDTHFPNHPGNTKDFWLPTDRKGAKLWLQDFLKERFVQFGPYEDAFSLDFPFLQHSVLT 268 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P+L++G+L+P++ + + +S + WREF R + + + Sbjct: 269 PFLNVGLLTPKEVIESTLDYAKKNSVPMESLEGFIRQIIGWREFIRGIYQNFGAKQESIN 328 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + L + W G TG P +D +++ N G+ H+ R++ L+ Sbjct: 329 YFGHKR--------KLTKHWYDGTTGIPPLDFVIQKCNLYGYAHHIERLMVVGSLMVLFE 380 Query: 367 VDWRIGEEYFMSQLLD 382 +D + +FM +D Sbjct: 381 IDPKDAYRWFMEMFID 396 >gi|118773275|gb|ABL14181.1| cryptochrome 1 [Meleagris gallopavo] Length = 126 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 K + +NYP P+V+H +A + + +Q Sbjct: 7 AKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQ 39 >gi|145530798|ref|XP_001451171.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418815|emb|CAK83774.1| unnamed protein product [Paramecium tetraurelia] Length = 552 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 93/331 (28%), Gaps = 17/331 (5%) Query: 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 + + E L C + + + + + + + Sbjct: 150 ILLKLGIQSEVKENLSYLCTRNDLQQYHKEHVKLKDGKPNYSHDSSFYRWQRRRLNILMG 209 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 Y + + VT F D Sbjct: 210 PKGEDPE-----KWTYDSENRQPLKPGAKVPKKPDLIKSSYYDEAVSYVTKHFPKNFGDI 264 Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 E+ L++ E Y S LSP ++IG+++ Sbjct: 265 KNTIYPIDHDSTEEWLDCFLKQKLSEFGPYQDAVHSDYPFVNHSILSPMMNIGLITSSLI 324 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 ++ + + +S + WRE+ R L F M F +N Sbjct: 325 VDKTLQYYKQNKAPIQSVEGFLRQVIGWREYVRLLYFFEGEQQMKANF--------FNHQ 376 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379 + L W G T P +D ++++ ++H+ R++ + ++ + ++FM Sbjct: 377 NELSNNWYTGQTKLPPVDHMIQKVIKYAYLHHIERLMYIGNTMLLSEINPKEVFKWFMEV 436 Query: 380 LLD-GDL--ASNNGGW-QWAASTGNDSVPYF 406 +D + A N G Q A + PY Sbjct: 437 HIDSYEWVMAPNVFGMTQHADGGMMMTRPYI 467 >gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis] gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis] Length = 382 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 110/375 (29%), Gaps = 30/375 (8%) Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 I F D + L + + + + + + K + V Sbjct: 17 ISFHLL----LGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDVPVCQV 72 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTGPVTPSNI 193 D ++P + P ++ + ++ V + + Sbjct: 73 DAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVSGEKTKTTDWDAVD 132 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 G L +L FCK+++ Y+ R+ P + S LSP+ G Sbjct: 133 TFIEVDRSVGEVDWAKPGTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHTGQ 192 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-- 311 +SP++ R+++ +S +I RE + + Sbjct: 193 ISPQRAILRVRDFRSKFRESVESFIEE---CIIRRELSDNFCYYNNEKYDSIEGTNEWAR 249 Query: 312 -----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + + ++ T + +AA RQL G +H LRM A +++ Sbjct: 250 KTLNDHAKDKREYLYARGKLEKAQTHDDLWNAAQRQLVREGKLHGFLRMYWAKKILEWTD 309 Query: 367 VDWRIGEEYFMS---QLLDGDLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQG 415 + LDG + G W + G + R N Sbjct: 310 SPETALSDAIYFNDKYALDGIDPNGYVGCMW-SVCGIHDQGWAERPVFGKIRYMNYKGCQ 368 Query: 416 KRFDPQGTFIRHWLP 430 ++F F++ + P Sbjct: 369 RKF-AVAEFVKRYKP 382 >gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta] Length = 81 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 F+ L + SL + + + L + T L + E Sbjct: 1 RFLLQCLEDLDCSLRKLNSRLFVIR----GQPADALPKLFKEWGTTNLTFEEDPEPFGRV 56 Query: 119 RDKLLEKRLQHRVI 132 RD + + I Sbjct: 57 RDHNISALCEELGI 70 >gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai] Length = 96 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + A P +I W+++ L W +G TGFP IDA M QL GW+H+ Sbjct: 1 YTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHL 60 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386 R A FL + DL + W G + F LLD D + Sbjct: 61 ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 95 >gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae] Length = 130 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 4/66 (6%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 ++ F+ S+ ++K+L +G L ++ Sbjct: 2 GFDKTGPYRASFLIDSIADLRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYA 57 Query: 109 NRQYEI 114 +R+ Sbjct: 58 HREVSH 63 >gi|282899480|ref|ZP_06307446.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii CS-505] gi|281195637|gb|EFA70568.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii CS-505] Length = 511 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 50/410 (12%), Positives = 113/410 (27%), Gaps = 41/410 (10%) Query: 23 NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 + L +I I + ++ ++ +++++ + L Q+G Y Sbjct: 16 HPGLQELTIQRHQTSIIL--IESMAYAQERPYHRQKLVLVWSAMRHFARELGQQGWQVTY 73 Query: 82 HQCSNFDDSIEWLDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 F ++ + + + + L + + + Sbjct: 74 EIAPEFSSALTNWQQTHSITELWIMEPSDRPFIQFINQLNLTCPIHWLPNNLFLWKESEF 133 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 + G Y+ L++ + R ++ P + Sbjct: 134 IQWARGRKRLLLEDFYREGRKRFNVLMEEGKPVGGQWNLDKQNRKPPKKGLASPPALWFP 193 Query: 200 PFQ-------AIDPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQ-------- 240 P + FP G + + +++E R Sbjct: 194 PDPTTQAVITHVRNHFPHGYGEVDTFRWAVTRSQSRKVLSHFLETRLPNFGPYQDAMVTG 253 Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + LSPYL++G+L P + ++EE+ + S L WRE+ R + Sbjct: 254 EDTLWHALLSPYLNLGLLHPMEVIQAVQEEYNRHQLNLNSVEGFVRQILGWREYMRGVYI 313 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + W + G T + + Q+ G+ H+ R++ Sbjct: 314 YQSQTDPDYTQRNWFNHNQPLPHWFW-----TGKTDLNCLHQTLEQIYDTGYAHHIQRLM 368 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 S L + ++F + +D W T + F Sbjct: 369 ILSNFNLILGTSPQYVVDWFHAVFIDAHD--------WVMQTNVIGMGLF 410 >gi|218441390|ref|YP_002379719.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp. PCC 7424] gi|218174118|gb|ACK72851.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp. PCC 7424] Length = 506 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 42/392 (10%), Positives = 105/392 (26%), Gaps = 40/392 (10%) Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-------- 91 + I + Q ++ +++++ + L Q+G Y +F + Sbjct: 32 ILIESSNYVEQRPYHQQKLVLVWSAMRHFAEELQQEGWPVNYQITDDFATPLNHWIKQEK 91 Query: 92 ---------------EWLDSYCLQQRVTKLFYNRQYEINEVRRDK--LLEKRLQHRVICK 134 + +D L + + N E ++ L + Sbjct: 92 ITQLRVMTPSDRSFLKIIDRLDLNCEIKLIPNNHFLWSTEEFNTWAKSRKRLLMEDFYRE 151 Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 +L G+ + + V +P Sbjct: 152 GRKRFNILMEGNQPVSGQWNLDKQNRKPPKTNLKPPEPLWFEPDEITQDVINKVKNLQLP 211 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 + + + + + S +SPYL++G+L Sbjct: 212 TYGKIEPFLWGVTRQDALKVLDYFITTRLATFGPFQDAMVTGEETMWHSLISPYLNLGLL 271 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P++ +++ + + + S L WRE+ + + + E + Sbjct: 272 EPKEVIEAVEKRYNEEDLPLNSIEGFIRQVLGWREYMQGIYHHVDENYPQNNWFNHNEPL 331 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 W T + ++Q+ G+ H+ R++ + + + E+ Sbjct: 332 PKFY-------WDSSQTDMNCLQQILQQVEQTGYAHHIQRLMVLNNFALIAGISPQEIED 384 Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 +F + +D W T + F Sbjct: 385 WFHAAFIDAHD--------WVMQTNVIGMGQF 408 >gi|224114766|ref|XP_002332277.1| predicted protein [Populus trichocarpa] gi|222832439|gb|EEE70916.1| predicted protein [Populus trichocarpa] Length = 53 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI 42 S +VW R D RI DN AL AA D V VFI Sbjct: 4 SKTIVWCRRDFRIEDNPALAAAAR--DGCVFPVFI 36 >gi|260586482|gb|ACX46123.1| cryptochrome 4 [Sylvia borin] Length = 78 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373 W KD+ L WK TGFP IDA M QL GW+H+ R A FL + L + W G Sbjct: 2 CWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGHLWISWEEGM 61 Query: 374 EYFMSQLLDGDLASNNG 390 + F L+D D + N G Sbjct: 62 KVFEELLIDADYSINAG 78 >gi|304393315|ref|ZP_07375243.1| photolyase family protein [Ahrensia sp. R2A130] gi|303294322|gb|EFL88694.1| photolyase family protein [Ahrensia sp. R2A130] Length = 505 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 93/347 (26%), Gaps = 18/347 (5%) Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWL------DSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 + L ++GI + + L ++ T F N E R K Sbjct: 87 RRLKEEGIDRIIFAHPHDFTLEKRLHTALSDAEIEHEELDTPAFINTPQLNREYREGKKR 146 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + D ++ KA + + Q R+ Sbjct: 147 WFMADFYKFQRKRLDILMDGDNPQGGQWSFDDDNRKKVPKAKMAEIPQLHPRNATPYEQD 206 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 V + + L + Y + Sbjct: 207 ARQWVEKHFSGNYGSAETLWFPIDHEGAAEWLNTFLEQRFHLFGPYEDAIVKGESWLWHG 266 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 L+P L++G+L+PRQ N + S + WREF A Sbjct: 267 VLTPMLNVGLLTPRQIVNETLAFADKHDVPINSLEGFIRQIIGWREFMAATYADL----- 321 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + W + ++ G TG ID A+ ++N + H+ R++ + Sbjct: 322 ---GVEMRTTNHWKHTRKIPHSFYDGTTGIGPIDDAIHRINDTAYAHHIERLMVLGGFMF 378 Query: 364 DLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 D +FM +D D + Q A + PYF Sbjct: 379 LCEFDPDDIYRWFMEMFIDAYDWVMVPNAYAMSQNAGGGNITTKPYF 425 >gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 507 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 65/469 (13%), Positives = 131/469 (27%), Gaps = 80/469 (17%) Query: 11 LVWLRNDLRITDNK--------------------ALYAACHNSDAKVIAVFIATPEQWRQ 50 + W+ D R+ DN +L+ + Sbjct: 42 VYWMLRDQRLADNWALLHAASLAAASAAPLAVAFSLF--------------------PKP 81 Query: 51 HGISARQSH--FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 +SAR+ F+ L ++ + + I F + + + + L Sbjct: 82 FLLSARRRQLGFLLRGLRRLAADAATRRIPFFLLTGGP-----TEIPALVRRLGASALVA 136 Query: 109 NRQYEINEVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + + L V D ++P + K + + Sbjct: 137 DFSPLRPVREALDAVVGTLGRDAASVAVHQVDAHNVVPVWAASGKLEYSAKTFRSKMNKV 196 Query: 166 I-QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALH 217 + + LV+ + VP R ++ +P + L Sbjct: 197 LDEYLVEFPELAQVVPWDREQPKDIDWDMLIDTVCSQAEDVPEIDWCEPGEAAAMEALLG 256 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 F +++ Y R+ P S LSPYL G +S ++C K+ + Sbjct: 257 TKDGFLTKRIKSYDSDRNYPTKPTALSGLSPYLHFGHISAQRCALEAKKRRHLSPKSVDA 316 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK------QGY 330 +I RE + + P W K + + + Sbjct: 317 FLEEL---IIRRELADNFCYYQPHYDSVAGAWEWARKTLKDHAADKREHIYTREQLENAK 373 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387 T P+ +A+ ++ G MH +RM A +++ +DG + Sbjct: 374 TADPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSIAIYLNDKYHIDGRDPN 433 Query: 388 NNGGWQWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRH 427 G W+ +D P F R N ++ D ++++ Sbjct: 434 GYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKLDVDAYISYVKR 482 >gi|32475188|ref|NP_868182.1| a deoxyribodipyrimidine photolyase-like protein [Rhodopirellula baltica SH 1] gi|32445729|emb|CAD78460.1| conserved hypothetical protein-putative a deoxyribodipyrimidine photolyase-related protein [Rhodopirellula baltica SH 1] Length = 566 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 98/328 (29%), Gaps = 14/328 (4%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+LS + E L + Q+ V F + + Sbjct: 137 LRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNHFYCSPDQFDDWASGR 196 Query: 128 QHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V+ + + + RK + + + + Sbjct: 197 KSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFGKGGPKEVPPTPSFKPDSI 256 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQ 240 T V RF D+P + P+ +AL+ L F + ++ + +D Sbjct: 257 TQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHRLPLFGTYQDAMWEGETFL 316 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LS +++ +LSP++ + + + D L WRE+ R + Sbjct: 317 YHSRLSHSINLHLLSPKEVVDAAVKAYKDGNAPLNCVEGFVRQILGWREYVRGVYWNRMP 376 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + G T + AMR L + H+ R++ Sbjct: 377 DYEERNALHCDSEQDVPPFFW------DGNTDMACVSDAMRLLVDTAYAHHIQRLMVLGL 430 Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387 + + M+ D D S Sbjct: 431 FAQLFGTHPLRFHHWHMAMYADAIDWVS 458 >gi|168702415|ref|ZP_02734692.1| deoxyribodipyrimidine photolyase [Gemmata obscuriglobus UQM 2246] Length = 524 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Query: 11 LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W R R+ N AL A + + + + +AR FI + Sbjct: 22 LYWPQMFR---RLHSNHALDHALKLAGEHKKPLVVYEGLKLNYPWANARHHTFILQGMRD 78 Query: 68 VQKSLSQKGI 77 ++ + G+ Sbjct: 79 NARAAQKLGL 88 >gi|255017124|ref|ZP_05289250.1| hypothetical protein LmonF_03773 [Listeria monocytogenes FSL F2-515] Length = 53 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 +IH P + L +YP P++DHK+ + +Y +K+ Sbjct: 1 FIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 48 >gi|186683798|ref|YP_001866994.1| deoxyribodipyrimidine photolyase-related protein [Nostoc punctiforme PCC 73102] gi|186466250|gb|ACC82051.1| deoxyribodipyrimidine photolyase-related protein [Nostoc punctiforme PCC 73102] Length = 503 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 47/388 (12%), Positives = 112/388 (28%), Gaps = 36/388 (9%) Query: 24 KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 AL + H + VI I + + ++ +++++ + L Q Y Sbjct: 21 AALQSCLHQENVPVIL--IESLRHVQVRPYHRQKLVLLWSAMRHFAQELRQLKYSVTYKI 78 Query: 84 CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK--LLEKRLQHRVICKSFDDSVL 141 +F+ ++ ++ + N ++ + + + S ++ Sbjct: 79 AEDFETPLQEWIKENQITQLRVMTPNDLPFTQIIQSLELLCTITLIPNNHFLWSTEEFNN 138 Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 G Y+ + L++ + R + P + Sbjct: 139 WASGRKRLLMEDFYREGRRRFQILMEKDKPVGGKWNLDKENRQPPKGKLNTPPTQWFESD 198 Query: 202 Q---------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI------------- 239 + GE + ++ Sbjct: 199 EITLDVIAQVNSLTCPTYGEIKPFRWGINRQQALQVLDWFIQNRLPHFGPYQDAMVTGEE 258 Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 + LSPYL+IG+L P + +++ + + S L WRE+ + + Sbjct: 259 TMWHALLSPYLNIGLLQPMEVIQAVQQAYFQQQLPLNSVEGFIRQVLGWREYMHGIYHYV 318 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + K + T+ + W G T + + Q+ G+ H+ R++ Sbjct: 319 DADYSNKNWFNHTQPLPDFF-------W-TGRTEMNCLHQILTQVERTGYAHHIQRLMVL 370 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 S + + E +F + +D D Sbjct: 371 SNFALIAGLSPQSVENWFHAVFIDAYDW 398 >gi|256426122|ref|YP_003126775.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga pinensis DSM 2588] gi|256041030|gb|ACU64574.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga pinensis DSM 2588] Length = 492 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 111/354 (31%), Gaps = 18/354 (5%) Query: 62 YASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 +A++ + K L K + Y + ++ ++ YC Q + + Y IN + Sbjct: 76 HATIQALIKWLHSKKVYELHYAETDDYL-LERRINRYCRQYDIAPVTYINPGFINRLDEV 134 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + + I ++ P Sbjct: 135 TTFFDGRKRYFMQDFYIHQRKTRQILIDVKGPVGGHWSFDADNREKIPKGESIPDPRFPP 194 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 A + + + P A +P+ Q A H L +F +E+ + D Sbjct: 195 AGKYLKEAISYVQQHYKNNPGDATTCRYPVTHQQAEHWLEQFLEERFRKFGIYEDAIVQT 254 Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S L+P L+IG+L P Q + + S L WREF R L Sbjct: 255 ESILYHSMLTPALNIGLLLPMQILEKAIAMAPVHKVPLNSLEGFIRQILGWREFIRILYR 314 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 S F + ++ G TG P ID + +L G+ H+ R++ Sbjct: 315 REGSKQRTTNFWDHERPMPD--------SFYTGNTGIPPIDQTIHKLLRHGYTHHIERLM 366 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 + + ++FM +D D + G Q+A + PY Sbjct: 367 ILGNFMLLCELHPDAVYQWFMELYIDAYDWVMVPNVYGMSQFADGGLMSTKPYI 420 >gi|162454692|ref|YP_001617059.1| hypothetical protein sce6412 [Sorangium cellulosum 'So ce 56'] gi|161165274|emb|CAN96579.1| phr [Sorangium cellulosum 'So ce 56'] Length = 508 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 68/462 (14%), Positives = 117/462 (25%), Gaps = 68/462 (14%) Query: 1 MKATTAMSV------HLVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51 ++ AM V L W+ R R N L A S A + + + Sbjct: 11 LRTRNAMPVREGGDYVLYWMIASR---RTRYNFGLERAIAWSMALDRPLVVLEALRCGYR 67 Query: 52 GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111 S R F+ + + L+ G+ + L + + V Sbjct: 68 WASDRIHRFVIDGMADNARRLAAAGVAHHPYVEPAEGAGKGLLGALAARACVVVTDDYPC 127 Query: 112 YEINEVRRDKLLE--------------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 + + + + + + + I H V Sbjct: 128 FFLPRMVASAARQAPVRLEQVDSNGLLPMRAADRVFTTARSFRIFWQRVIGEHLGAQPAV 187 Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217 R L + PA G + A Sbjct: 188 DPLKRAKLRPAAPLPRAIARRWPAASPALLGGDPAALSALPIDHTVPPAPCRGGPEAAGK 247 Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277 L +F +++ Y+E+RD P TS LSPYL G L+ + + + + + Sbjct: 248 ALARFVADRLPRYLEERDHPDAGATSGLSPYLHFGHLAAHEVFAAVARREAFRVERLGRP 307 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMG-----------------KPFIPWTEKIEWNKDS 320 RE + + A + + P + Sbjct: 308 GDGVKRPSGSREGFWGMSASAEAFLEQLVTWRELGFNAFALGASEGDGPRPSWKRDPTEY 367 Query: 321 HLLQAW------KQGYTGFP----------------IIDAAMRQLNTIGWMHNRLRMITA 358 L W K P I +A+ +L G MHN LRM+ Sbjct: 368 ESLPDWALATLEKHARDRRPRVYPIEALAAGATYDRIWNASQVELLREGRMHNYLRMLWG 427 Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397 +++ E LDG ++ G W Sbjct: 428 KKILEWSRTPREALEIMIELNDRYALDGRDPNSTSGIFWVLG 469 >gi|227505175|ref|ZP_03935224.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198224|gb|EEI78272.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 120 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 44/81 (54%) Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 I +E+ L+AW+ G TG P++DA MR+L G+MHN +RM Sbjct: 13 FRNFDWYWDGGGIDTSERDPRPHPLPELEAWRTGETGIPLVDAGMRELWQTGYMHNHVRM 72 Query: 356 ITASFLVKDLLVDWRIGEEYF 376 + SFL K+L + WR GEE+F Sbjct: 73 VVGSFLTKNLGIHWRHGEEWF 93 >gi|33860982|ref|NP_892543.1| hypothetical protein PMM0425 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639714|emb|CAE18884.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 496 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+ ++ ++ + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTAKEVIDKALTYGEKNKVPINSLEGFIRQIVGWREFICLVYEKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + + + + +G TG +D + + G+ H+ R++ Sbjct: 322 QMRTTNF-------WNFDNKPMPECFYKGSTGIDPVDIVINNIIKYGYCHHIERLMIIGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPDHVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|269965811|ref|ZP_06179906.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B] gi|269829546|gb|EEZ83785.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B] Length = 117 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 4/113 (3%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108 S R F++ SL + ++L G FDD++ S Q ++ +F Sbjct: 2 NNPHYSERHWRFVWQSLQDMDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFS 57 Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 +++ +N + F+ +N + Sbjct: 58 HQEIGLNCTFERDRQVAAWLYEQNIDWFEFEHGAVIRGAINRQGWDKHLGLCH 110 >gi|260436163|ref|ZP_05790133.1| photolyase protein family protein [Synechococcus sp. WH 8109] gi|260414037|gb|EEX07333.1| photolyase protein family protein [Synechococcus sp. WH 8109] Length = 498 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 11/174 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + S L+P L+IG+L+P Q +R E I S + WREF + Sbjct: 259 QHQVMWHSVLTPMLNIGLLTPLQVLDRTLERAEAGDIPLNSLEGFLRQIIGWREFMAAIY 318 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F + ++ + A+ TG P ID A+R G+ H+ R+ Sbjct: 319 RRHGVEMRNGNFWGFDDRP-------IPSAFYTASTGLPPIDDAIRHALETGYCHHIERL 371 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 + ++ +FM +D D N G Q+A + PY Sbjct: 372 MLLGNVMLLCGFHPTRIYTWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPY 425 >gi|33865778|ref|NP_897337.1| photolyase family protein [Synechococcus sp. WH 8102] gi|33632948|emb|CAE07759.1| photolyase protein family [Synechococcus sp. WH 8102] Length = 495 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 11/175 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + L+P L+IG+L+P+Q +R + S + WREF + Sbjct: 256 QHQVMWHGVLTPMLNIGLLTPQQVLDRTLARAEVGDVPLNSLEGFIRQIIGWREFMAAMY 315 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F ++ + +A+ G TG P ID A+ G+ H+ R+ Sbjct: 316 RRHGVTMRNGNFWEVEDRP-------IPEAFYTGSTGLPPIDDAISHALDTGYCHHIERL 368 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + ++ +FM +D D N G Q+A + PY Sbjct: 369 MLLGNVMLLCGFHPTRVYSWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYV 423 >gi|120437053|ref|YP_862739.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii KT0803] gi|117579203|emb|CAL67672.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii KT0803] Length = 515 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 38/361 (10%), Positives = 102/361 (28%), Gaps = 28/361 (7%) Query: 30 CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 N D +VI + I PE + + K +S+K I +Q + Sbjct: 65 LRNKDFQVIYLSINDPENLQNLD-------------KNLNKIISEKNIEKFEYQFPDEYR 111 Query: 90 SIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 E L + + + + + +++ + +K+L + + + + Sbjct: 112 LDEQLKKFSKHLHIKSEAFDSEHFFTKRDDLEKFYEGKKQLTMEYFYRYMREKNNILMAT 171 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 + + RK + R ++ + + I + + Sbjct: 172 EKDPEGGKWNFDKSNRKKWTGDPEIPHERGFRKDVSKILKEIEQAEIKTMGSLDEKKFNW 231 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQ--RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264 + ++ + + S+LS ++ +LSPR+ + + Sbjct: 232 PTSREDSLSVLNYFCKNLLIHFGDFQDALHTEQEYLFHSRLSFSMNSKMLSPREVVDSVI 291 Query: 265 EEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + + L WRE+ R + + K+ Sbjct: 292 DFYYEHRDTIDISQVEGFVRQILGWREYMRGIYWKEMPGYRRANKLDNQNKLPEFY---- 347 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 W T + +++ + H+ R++ + +++ +D Sbjct: 348 ---W-NAETKMNCLHHSIKNSLENAYAHHIQRLMITGNYALLTQTHPDEVDHWYLGIYID 403 Query: 383 G 383 Sbjct: 404 A 404 >gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 477 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 127/410 (30%), Gaps = 35/410 (8%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67 + W D R +N AL A ++ + + + + + AR++ F L + Sbjct: 29 VYWCDRDRRCANNDALGRAMELANERRVPLVVAMHVGTDLSGSGIGGARRAVFALKGLKE 88 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L +G+ + + D + C + + + + + + + Sbjct: 89 LDEDLRARGVS---TRTTTGSDVAGGIVETCETLNASAVVCDFSPLREGRAAREAVARVV 145 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + VI D ++P + + P + + + A + A Sbjct: 146 EVPVIEV--DAHNVVPAWVTSDKQEYAARTIRPKIHRNLGDFLTAPQALDDLIAAPDALT 203 Query: 188 VTPSNIPR---------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + ++ I P L + +R+ P Sbjct: 204 PSETDWDALIDTARVKGAHVPEVDWIKPGERAALAALLDPNVDSFLPQRLTLYGERNKPT 263 Query: 239 IQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S+LSPYL+ G LSPR+ + + + L ++ RE + F Sbjct: 264 SPRAVSRLSPYLNHGQLSPRRAAWEAAQLRGIVDDEAIDSYLEEL--IVRRELSDNYCLF 321 Query: 298 YPSV------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 P + + + + ++G T + +AA ++L +G MH Sbjct: 322 NPYYDSLQGASQWAQDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHLGRMHG 381 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDG------DLASNNGGWQWA 395 +RM A +++ QL D D + G W+ Sbjct: 382 FMRMYWAKKILEWT--PSPEVALQTAIQLNDAYALDGLDP-NGYVGCMWS 428 >gi|88808546|ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805] gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805] Length = 495 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + S L+P L+IG+L+P+Q +R E D I S + WREF + Sbjct: 256 QHRVMWHSVLTPMLNIGLLTPQQILDRTLERAADGDIPLNSLEGFIRQIVGWREFMAVMY 315 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F + ++ + A+ TG P ID A+ + G+ H+ R+ Sbjct: 316 RRHGVAMRNSNFWKFEDRP-------IPDAFYTATTGLPPIDDAIGHALSSGYCHHIERL 368 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNN-GGWQWAASTGNDSVPY 405 + ++ + ++FM +D D N G Q+A + PY Sbjct: 369 MLLGNVMLLCGFHPQRVYQWFMELFVDAYDWVMVPNVFGMSQFADGGLFTTKPY 422 >gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645] gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645] Length = 494 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 64/430 (14%), Positives = 114/430 (26%), Gaps = 47/430 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ + R N +L A + + + + S R F+ + Sbjct: 25 LYWMIANRRTRCNFSLQRAVDWAQQLKKPLIVFEALRIDYPWASRRFHRFVLQGMRDNAA 84 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 +L + Y+ + + + Sbjct: 85 ALRR--SPVLYYPYVEPGKHED--HGLFAALAARSCVIVTDDFPCFFLPRMVRAVARRVD 140 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------------- 175 V+ + D + +LP + + L +LV Sbjct: 141 VLLEQVDSNGILPMRAADRTFTVAHSFRRFLHHQLRDHLVDFPQADPLQDAQIPRAASKL 200 Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 P S D + G A L F +++ Y Sbjct: 201 IANIQTNYPPASSEVLSAASEALDALPIDQSVGDAVMEGGSVAAQQTLDSFLGDRLLRYG 260 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNE--- 284 E+R+ P S LSPYL G +S + +L E L K W N Sbjct: 261 EERNSPESDAASGLSPYLHFGHISAHDIFVQLSERESWNVSHLADKATGSREGWWNMSTD 320 Query: 285 --------LIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGY 330 + WRE ++ + + + W + + + L + Sbjct: 321 AESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGEHQKDPRPYVYDLAQLESSR 380 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387 T + +AA QL G MHN LRM+ +++ +DG + Sbjct: 381 THDQLWNAAQSQLVREGRMHNYLRMLWGKKILEWSTTPEEALAAMIQLNNKYAVDGRNPN 440 Query: 388 NNGGWQWAAS 397 + G W Sbjct: 441 SYSGIFWCLG 450 >gi|153005863|ref|YP_001380188.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5] gi|152029436|gb|ABS27204.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5] Length = 493 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 58/385 (15%), Positives = 97/385 (25%), Gaps = 39/385 (10%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R+ N AL A + V I + S R F+ + + + Sbjct: 29 LYWMTAARRVRFNPALERAIALARELERPVAILEALRVGDPYASDRLHAFVLQGMAENAR 88 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 L+ G V + E L + + + + + Sbjct: 89 RLA--GRVLHHPYVERAPGEGEGLLEALAARACAVVTDDLPTFFLPRQCAAAAAQVDVRV 146 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------------- 176 G A + A + L AD + Sbjct: 147 EAVDGSCVVPFRLAGKDFPTAHAYRRHLQRLLPAWLDRLPSADPLARAALPPPPALSRGI 206 Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 PA+ P+ + G + A L ++ ++ + Y + R Sbjct: 207 AQRWPAVTPDALARPARLTASLPIDHGVPPAPLRGGARAAGVRLARWLEQGLPRYADARS 266 Query: 236 IPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE---------- 284 P + S LSP+L G +S + + G + Sbjct: 267 DPDEEGVASGLSPWLHFGHVSSFEVVRAVLRREGWTPALLSPGVTGARSGWWGVSAAAEA 326 Query: 285 -----LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ------GYTGF 333 + WRE A W T Sbjct: 327 FLDQLVTWRELGFATCAHRADHREYGSLPAWARATLEAHAGDPRPHAYDRDTLDAARTHD 386 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITA 358 P+ +AA RQL G +HN LRM+ Sbjct: 387 PLWNAAQRQLRVEGVIHNALRMLWG 411 >gi|327540311|gb|EGF26897.1| Deoxyribodipyrimidine photolyase-related protein [Rhodopirellula baltica WH47] Length = 513 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 98/328 (29%), Gaps = 14/328 (4%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++K+LS + E L + Q+ V F + + Sbjct: 84 LRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNHFYCSPDQFDDWASGR 143 Query: 128 QHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 + V+ + + + RK + + + + Sbjct: 144 KSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFGKGGPKEVPPTPSFKPDSI 203 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQ 240 T V RF D+P + P+ +AL+ L F + ++ + +D Sbjct: 204 TQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHRLPLFGTYQDAMWEGETFL 263 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LS +++ +LSP++ + + + D L WRE+ R + Sbjct: 264 YHSRLSHSINLHLLSPKEVVDAAVKAYEDGTAPLNCVEGFVRQILGWREYVRGVYWNRMP 323 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + + G T + AMR L + H+ R++ Sbjct: 324 DYEERNALHCDSEQDVPPFFW------DGNTDMACVSDAMRLLVDTAYAHHIQRLMVLGL 377 Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387 + + M+ D D S Sbjct: 378 FAQLFGTHPLRFHHWHMAMYADAIDWVS 405 >gi|326319200|ref|YP_004236872.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376036|gb|ADX48305.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 526 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 62/424 (14%), Positives = 111/424 (26%), Gaps = 65/424 (15%) Query: 20 ITDNK---------ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + D+ AL AA P++ + + Sbjct: 81 LDDHHGAPCRTLADALRAAIRTHR----------PQRLVMTAPGDWRVW------KALSA 124 Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130 + G+ +F ++ + Q L Y R L++ Sbjct: 125 VAADAGLPLDTRPDRHFFATVREFADFRRQLGGRPLRLETFYRAMRRRHGILMDGDRPEG 184 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 ++ + AL + ++QA R L P Sbjct: 185 GAWNYDKNNRRPFG---PQGPGMVPARCRFEPDALTREVLQAVSRRFGDHPGLLEDFAWP 241 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 + +D P + S LS L+ Sbjct: 242 VTRAQALHALADFVDHRLPAFGPFQDAMWPGEPWLYH---------------SHLSAALN 286 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 + ++ PR+ + + + S L WRE+ R + P Sbjct: 287 LKLIHPREVVAATEAAYRSGKVPLASAEGFIRQILGWREYVRGIYWTEM---------PS 337 Query: 311 TEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369 L AW G T F + A+RQ G+ H+ R++ L V Sbjct: 338 YRDRNALGADAPLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRP 397 Query: 370 RIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRF 418 + ++++ +D +L + G Q+A S PY R+ P R Sbjct: 398 QAVHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCT-TCRH 456 Query: 419 DPQG 422 DP Sbjct: 457 DPDA 460 >gi|124006828|ref|ZP_01691658.1| photolyase protein family [Microscilla marina ATCC 23134] gi|123987509|gb|EAY27218.1| photolyase protein family [Microscilla marina ATCC 23134] Length = 425 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 12/170 (7%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S L+P L++G+L+PRQ + + S + WREF R + + + Sbjct: 182 NHSVLTPMLNVGLLTPRQVIDNTLAFSQAQQVPLNSLEGFVRQIIGWREFIRGVYQYKGT 241 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 K + W + ++ +G TG +D ++++ G+ H+ R++ Sbjct: 242 EERTKNY--------WGFTRKIPPSFYEGTTGITPVDVTIKKVLKTGYCHHIERLMVLGN 293 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + D +FM +D D N G Q+A + PY Sbjct: 294 FMVLCEFDPDEVYRWFMELFVDAYDWVMVPNVYGMSQFADGGLMSTKPYI 343 >gi|306019717|gb|ADM78912.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019719|gb|ADM78913.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019721|gb|ADM78914.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019723|gb|ADM78915.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019725|gb|ADM78916.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019727|gb|ADM78917.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019729|gb|ADM78918.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019731|gb|ADM78919.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019733|gb|ADM78920.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019735|gb|ADM78921.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019737|gb|ADM78922.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019739|gb|ADM78923.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019741|gb|ADM78924.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019743|gb|ADM78925.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019745|gb|ADM78926.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019747|gb|ADM78927.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019749|gb|ADM78928.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019751|gb|ADM78929.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019753|gb|ADM78930.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019755|gb|ADM78931.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019757|gb|ADM78932.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019759|gb|ADM78933.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019761|gb|ADM78934.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019763|gb|ADM78935.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019765|gb|ADM78936.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019767|gb|ADM78937.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019769|gb|ADM78938.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019771|gb|ADM78939.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019773|gb|ADM78940.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019775|gb|ADM78941.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019777|gb|ADM78942.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019779|gb|ADM78943.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019781|gb|ADM78944.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019783|gb|ADM78945.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019785|gb|ADM78946.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019787|gb|ADM78947.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019789|gb|ADM78948.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019791|gb|ADM78949.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019793|gb|ADM78950.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019795|gb|ADM78951.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019797|gb|ADM78952.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019799|gb|ADM78953.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019801|gb|ADM78954.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019803|gb|ADM78955.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019805|gb|ADM78956.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019807|gb|ADM78957.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019809|gb|ADM78958.1| cryptochrome 1-like protein [Picea sitchensis] gi|306019811|gb|ADM78959.1| cryptochrome 1-like protein [Picea sitchensis] Length = 193 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 4/116 (3%) Query: 58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ SL + SL G + + +SI + T+LFYN Y+ + Sbjct: 1 RWWLKQSLAHLDSSLRNLGARLITKRST---NSISAILQVVQATGATQLFYNHLYDPLSL 57 Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 RD L++ L R I +SF+ +L P + + + + + + Sbjct: 58 VRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDP 113 >gi|145589789|ref|YP_001156386.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048195|gb|ABP34822.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 511 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 46/374 (12%), Positives = 106/374 (28%), Gaps = 32/374 (8%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDK 121 + +++ L Q I + ++ + ++ + E Sbjct: 83 VDALKEKLQQDNIGRLICIEPGEWRLKQQIEKLASELSISLEMCEDDHFFCTHQEFIDWT 142 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 +K L+ + + + N + RK + + Sbjct: 143 AGKKELRLEYFYRLMRKRHNILVDAEGNPEGGQWNFDQDNRKPYPKKGPGMVDEPVLFEP 202 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 +T V + +P +P+ + AL L F + ++ + +D Sbjct: 203 DEITQEVIAFVKRTYPKHPGSLEAFRWPVNREQALEALNYFVEYRLRNFGVYQDAMWTDT 262 Query: 242 TSQL----SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 S L++ +L+PR+ + + + + L WREF R + Sbjct: 263 PYGWHSILSSSLNLKLLNPREVIAAVLTAWKKYALDLSTVEGFIRQILGWREFVRGMYYL 322 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + W G T + A+ Q G+ H+ R++ Sbjct: 323 DMPGMAQDNYYGHERALPKWY-------W-DGKTKMACMKDAIGQTLEYGYAHHIQRLMV 374 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTI 413 + +++++ +D +L + G +A S PY Sbjct: 375 TGNFALLAEILPSAVCDWYLAIYVDAIEWVELPNTAGMALFANGGRFTSKPYI------- 427 Query: 414 QGKRFDPQGTFIRH 427 G +I+ Sbjct: 428 ------ASGAYIKR 435 >gi|307101791|gb|EFN50420.1| hypothetical protein CHLNCDRAFT_29124 [Chlorella variabilis] Length = 92 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 49/74 (66%) Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 F+ + + + W D L +AW+QG TG+P++DAAMR++ GWMHNR+R++ Sbjct: 9 FHFPFTHERSLLEHLRAVPWRFDQRLFKAWRQGRTGYPLVDAAMREVWGTGWMHNRMRVV 68 Query: 357 TASFLVKDLLVDWR 370 ASF+VK+LL+ W+ Sbjct: 69 AASFMVKNLLLPWQ 82 >gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium MedDCM-OCT-S09-C3] Length = 496 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 64/437 (14%), Positives = 120/437 (27%), Gaps = 51/437 (11%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 + W+ + R N AL A ++ + + + + R F+ ++ + Sbjct: 22 VYWMTSARRARWNHALDHAVELANEHHVPLIVVECLALGHRYANDRIHTFVLQGMMD-NR 80 Query: 71 SLSQKGIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 L + V + L S+ + Y +V R + Sbjct: 81 KLFEMSAVTYVPYVETKKFQAGGLLQSFAKDAVAVVIDDYPTYMPRDVARRAKKLTQCSV 140 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 R I + + P S ++ + + L+ L Sbjct: 141 RCIDSNGVVPLRAPERSFSTAHSFRRYIHQNVLNFIADPPLSHPLKELNDVPDGSIIVKQ 200 Query: 190 PSNIPRFFDYPFQAID-------------------------PMFPIGEQNALHILRKFCK 224 P + I G A L+KF + Sbjct: 201 CFEEVNIPLTPLEFIWRVSEASREGRDALQALDIDHDVPPVDSRRGGSVTARTELKKFIE 260 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 +++ Y R+ P G S LSP+L G +S + N + + Sbjct: 261 QRLNTYHVDRNHPERHGGSGLSPWLHFGHISSFEIVNEVLTSQKWNPMLITPPHNGRRAG 320 Query: 285 ---------------LIWREFYRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLL 323 + WRE +P + W +K + + Sbjct: 321 WWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTLEEHATDERPYVYTF 380 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQL 380 + + T P+ +AA QL G +HN LRM+ +++ + E Sbjct: 381 EQLENAETHDPLWNAAQTQLRKEGIIHNYLRMLWGKKVLEWCPDPEKACEWLIQLNDRWA 440 Query: 381 LDGDLASNNGGWQWAAS 397 LDG ++ G W Sbjct: 441 LDGRDPNSYTGIFWIFG 457 >gi|297521221|ref|ZP_06939607.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50] Length = 28 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 16/27 (59%), Positives = 18/27 (66%) Query: 7 MSVHLVWLRNDLRITDNKALYAACHNS 33 M HLVW R DLR+ DN AL AC +S Sbjct: 1 MITHLVWFRQDLRLHDNLALAGACRHS 27 >gi|260431371|ref|ZP_05785342.1| photolyase protein family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415199|gb|EEX08458.1| photolyase protein family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 471 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 103/359 (28%), Gaps = 20/359 (5%) Query: 60 FIYASLLQVQ--KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQ 111 F S ++ +SL +G+ + + L + + F N + Sbjct: 49 FERQSGACLRLFQSLRDRGVDQVIMADPADFIAEKRLRAAASNTGIMLDIQPSPGFLNTR 108 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + + + + + + ++ + + KAL+ +L Sbjct: 109 ADNLDWSAGRKRWFMAEFYKSQRRRLNVLMDSGQPVGGQWSFDEENRKKVPKALLGSLPW 168 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231 D V L + + Y Sbjct: 169 IDWPVHDAVDEAAKASVIADFPDALGSLDTLYYPTSHEAASDWLGQFLERRFEHFGDYED 228 Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 + + L+P L+IG+L+P+Q + I S + WREF Sbjct: 229 AIVEGENWLWHAVLTPALNIGLLTPKQVLDAALAHADRKGIPLNSVEGFIRQIIGWREFM 288 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 R +P W + +++ G TG +D ++++ G+ H+ Sbjct: 289 RATYESL--------GVPMRTTNHWGHHRPMPRSFYDGTTGIDPLDDTIKRVLQTGYCHH 340 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 R++ + +D +FM +D D + Q A + PYF Sbjct: 341 IERLMVLGGFMFLCEIDPDHVYRWFMEMFVDSYDWVMVPNVYAMSQHADGGLITTKPYF 399 >gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays] Length = 376 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 50/346 (14%), Positives = 90/346 (26%), Gaps = 48/346 (13%) Query: 11 LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54 + W+ D R+ DN L A F P + G Sbjct: 29 VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 RQ F+ L ++ +G+ F + + L S + + L + Sbjct: 77 LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131 Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168 + + L + D ++P + K + +I Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191 Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A ++ + +P + L F Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGNKDGFL 251 Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +++ Y R+ P S LSPYL G +S ++C E + PKS Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +I RE + + P W K + + Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYT 354 >gi|254424869|ref|ZP_05038587.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. PCC 7335] gi|196192358|gb|EDX87322.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. PCC 7335] Length = 505 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 44/386 (11%), Positives = 102/386 (26%), Gaps = 39/386 (10%) Query: 30 CHNSDAKVIAV----FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85 + SD +I + ++ +Q + I++++ + L +G Y + Sbjct: 24 ANKSDTPIILIESIDYVIKRRYHQQ------KLVLIWSAMRHFAEELKAEGWQVTYKIAT 77 Query: 86 NFDDSIEW------LDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFD 137 F +E +D + + + F + + L +S+ Sbjct: 78 TFQAPLEEWIEQNNIDELRVMEPADRPFAEWLDAMSLDCEIVQTQNNHFLWSTAEFESWA 137 Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197 S + K + D + P ++ P + P Sbjct: 138 TSRKSLLMESFYREGRRRFDILMDGKKPVGGQWNFDKENRRPPKGTISPPKPLTFEPDEI 197 Query: 198 D---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--------------PAIQ 240 GE ++ + RD Sbjct: 198 TQTVMKTVKTADYSTFGESDSFGWAVTREQALQVLDNFVRDRLTTFGPYQDAMVTGEDTM 257 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + LSPYL+IG+L P + + + + + + I + Sbjct: 258 WHAMLSPYLNIGLLQPMEVIDAVIAAYESAANSDHPIPLNSVEGFIRQVLGWREYMRGIY 317 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + G T + + L G+ H+ R++ + Sbjct: 318 NHVDADYPSRNYFEHIHSLPDFFW---TGDTKLNCLHQTINTLKRTGYAHHIQRLMILAN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385 + + E++F + +D D Sbjct: 375 FSLISGLSPQQVEDWFHAAFIDGYDW 400 >gi|124026270|ref|YP_001015386.1| hypothetical protein NATL1_15641 [Prochlorococcus marinus str. NATL1A] gi|123961338|gb|ABM76121.1| Uncharacterized protein deoxyribodipyrimidine photolyase-like protein [Prochlorococcus marinus str. NATL1A] Length = 496 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 11/177 (6%) Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 S LSP ++ G+L+PRQ ++ E + I + WREF Sbjct: 255 HSNHRTLWHSVLSPLINSGLLTPRQIIDKSWEFYQSNNIGINCYEGFVRQIIGWREFILL 314 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + F + +K + ++ G TG +D +++ + G+ H+ Sbjct: 315 MYKRNSLELRNGNFWDFEDKP-------IPLSFYTGQTGIRPLDDSIKNILETGYAHHIE 367 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 R++ L+ ++FM +D D N G Q++ + PY Sbjct: 368 RLMIVGNLMLLCRFHPNQVYKWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYI 424 >gi|109899107|ref|YP_662362.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas atlantica T6c] gi|109701388|gb|ABG41308.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas atlantica T6c] Length = 503 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 105/333 (31%), Gaps = 23/333 (6%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 D ++++ L+Q + + N + + + F + L Sbjct: 108 DPVDFILKKRLEQYAYEGHIQITWHKNPGFLNTQRQNSAYRDSKKRWFMADFYRHQRTRL 167 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM- 207 N + K + +N + + + T + D Sbjct: 168 NILMDGDKPVSGRWSFDEENRKKIPKKEIANIPEIQFCAKTQYHTQAIERINADFSDHPG 227 Query: 208 ------FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPR 257 +P+ ++A L F +++ Y+ D S L+P L+IG+L+P+ Sbjct: 228 NGQTIIYPVTHEDAQLWLTAFFEQRFKYFGRFEDAIVEGQNWLYHSVLTPMLNIGLLTPK 287 Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317 Q ++ + + + S + WREF + + W Sbjct: 288 QVISQAIQCADEHEVDLASLEGFVRQIIGWREFM--------RATYSDIGVSMRTQNHWQ 339 Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377 + A+ G TG +D ++++ G+ H+ R++ + +FM Sbjct: 340 HKRKIPSAFYTGDTGIIPLDDTIKRILQTGYCHHIERLMVLGGFFFLCEFEPDEIYGWFM 399 Query: 378 SQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 +D D SN Q A + PYF Sbjct: 400 DMFIDSYDWVMVSNVYAMSQHADGGQITTKPYF 432 >gi|311900784|dbj|BAJ33192.1| hypothetical protein KSE_74370 [Kitasatospora setae KM-6054] Length = 504 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 9/173 (5%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LS L++G+L P +C R ++ + S WRE+ L Sbjct: 256 DPWMAHSLLSVPLNLGLLDPGECARRAEDAYRSGSAPLNSVEGFVRQVAGWREYVWQLYW 315 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + A + + A+ Q+ GW+H+ R++ Sbjct: 316 YLGEEHRHRNALGHHAPLPDWFAELDADAVRA-----RCLSGALAQVRDTGWVHHIPRLM 370 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 371 VLGNWALQHGYDPAAVTDWFHRCFVDGYDWVMVPNVVGMSQYADGGTVTTKPY 423 >gi|126655279|ref|ZP_01726718.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110] gi|126622758|gb|EAZ93463.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110] Length = 342 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 10/244 (4%) Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGPVTPSNIPRFFDYPFQ 202 + + RK QNL I ++ V I + Sbjct: 1 MEEDQPIGKKWNFDKQNRKPPKQNLNPPTPLWFEPDDITQQVIDDVKSYKIKTYGKIEPF 60 Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 Q H L Y S +SPY+++G+L P + + Sbjct: 61 KWGVTRSQALQVLDHFLENNLNNFGTYQDAMITGEYTMWHSLISPYINLGLLRPLEVIQK 120 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 +++ + D S L WRE+ + K + EK+ Sbjct: 121 IEKAYHDFNYPLNSVEGLIRQILGWREYMYGIYQLMDDDYRDKNWFDHQEKLPEFY---- 176 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 W T + ++Q+ G+ H+ R++ S + V + ++F S +D Sbjct: 177 ---WDSSQTDMNCLKQVLQQVEETGYGHHIQRLMVLSNFALIVGVSPQAINDWFHSAFID 233 Query: 383 -GDL 385 D Sbjct: 234 GYDW 237 >gi|78212891|ref|YP_381670.1| photolyase family protein [Synechococcus sp. CC9605] gi|78197350|gb|ABB35115.1| photolyase protein family [Synechococcus sp. CC9605] Length = 498 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 11/174 (6%) Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 + S L+P L+IG+L+P+Q +R E I S + WREF + Sbjct: 259 QHQVMWHSVLTPMLNIGLLTPQQVLDRTLERAKAGDIPLNSLEGFLRQIVGWREFMAAMY 318 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F + ++ + A+ TG ID A+R G+ H+ R+ Sbjct: 319 RRHGVEMRNGNFWGFDDRP-------IPSAFYTASTGLAPIDDAIRHALETGYCHHIERL 371 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 + ++ +FM +D D N G Q+A + PY Sbjct: 372 MLLGNVMLLCGFHPTRIYTWFMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPY 425 >gi|194702896|gb|ACF85532.1| unknown [Zea mays] Length = 376 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 50/346 (14%), Positives = 90/346 (26%), Gaps = 48/346 (13%) Query: 11 LVWLRNDLRITDNK----------------ALYAACHNSDAKVIAVFIATPEQWRQHGIS 54 + W+ D R+ DN L A F P + G Sbjct: 29 VYWMLRDQRLADNWALLHAAELAAASTPAAPLAIA-----------FTLFPRPF-LLGAH 76 Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 RQ F+ L ++ +G+ F + + L S + + L + Sbjct: 77 LRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLR 131 Query: 115 NEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--- 168 + + L + D ++P + K + +I Sbjct: 132 PVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTFRSKVNKVINEYLV 191 Query: 169 -----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 A ++ + +P + L F Sbjct: 192 EYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFL 251 Query: 224 KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 +++ Y R+ P S LSPYL G +S ++C E + PKS Sbjct: 252 TKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRC---ALEAKKRRHLSPKSVDTFLE 308 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 +I RE + + P W K + + Sbjct: 309 ELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYT 354 >gi|119486212|ref|ZP_01620272.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106] gi|119456703|gb|EAW37832.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106] Length = 501 Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 78/290 (26%), Gaps = 8/290 (2%) Query: 97 YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156 + + + + K ++ L +S +L + Sbjct: 114 LSCRIDWLENNHFLWRIDEFKQWSKGRKRLLMEDFYRESRKRFNILMEDKQPIGNRWNFD 173 Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 N V ++P + A Q Sbjct: 174 SENRKPPKGKFNPPHPLWFEPDEITQATIEQVNQLSLPLYGKIEPFAWAVTRQQALQVLQ 233 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 +++ Y + LSPYL++G+L P + + + + Sbjct: 234 SFIQERLPNFGTYQDAMLTGEQTLWHALLSPYLNLGLLHPLEVIQAAENAYYQQNLPLNC 293 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 L WRE+ + + + + + T+ + W T + Sbjct: 294 VEGFIRQVLGWREYMQGIYQLMDADYSQRNWFNHTQPLPEFF-------WDAEQTDMNCL 346 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 + Q+ T G+ H+ R++ S + + E +F + +D D Sbjct: 347 SQVLSQVETTGYAHHIQRLMVLSNFALITGLSPQEVENWFHAVFIDAYDW 396 >gi|86605777|ref|YP_474540.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. JA-3-3Ab] gi|86554319|gb|ABC99277.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. JA-3-3Ab] Length = 513 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 109/385 (28%), Gaps = 52/385 (13%) Query: 38 IAVFIATPEQWRQHGISARQSH----FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + V + W S +++++ + L Q+G Y + ++ + Sbjct: 36 VPVLLVESHAWAS---SRNHHQQKLVLVWSAMRHFAQELQQRGHPVTYAEAEDYAEP--- 89 Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L ++ Q R+ ++ + +I + L L ++ + + I + + Sbjct: 90 LQAWARQHRLQQIRLMQPTDIPVRDEVEKLRSALPCPLLVLENNHFLWTARQFIDWASGR 149 Query: 154 M----------------------YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 + + R P P +T + Sbjct: 150 KRLLLEDFYRQGRKRFRILMDGSQPLGGRWNYDRENRQPPQPGRRYPPPLTFPPDAITQA 209 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHI------LRKFCKEKVYYYVEQRDIPAIQGTSQ- 244 + + + + G + + + Sbjct: 210 VMEKVRRHYGHHFGSLEGFGWAVTRAQALQVLEDFIQHRLPHFGPWQDAMQVEEDFLYHS 269 Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--SV 301 LSPYL++G+L+P++ ++ + I S L WRE+ R + Sbjct: 270 LLSPYLNLGLLTPQEVITAAEQAYHRGGIPLPSAEGFIRQILGWREYMRGFYEYQMPQGY 329 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 F + ++ A + +RQ+ G+ H+ R++ S Sbjct: 330 AQTNFFGHYRPLPDFFWTGETDMA---------CLRHTLRQIRRHGYAHHIQRLMVLSNF 380 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL 385 + + E +F +D D Sbjct: 381 ALISGIQPQAVEAWFHDVFIDSYDW 405 >gi|123965722|ref|YP_001010803.1| hypothetical protein P9515_04871 [Prochlorococcus marinus str. MIT 9515] gi|123200088|gb|ABM71696.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein [Prochlorococcus marinus str. MIT 9515] Length = 496 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P++ N+ + S + WREF + + + Sbjct: 262 WHSLLSPLLNSGLLTPKEVINKALTFAEKNKVPMNSLEGFIRQIVGWREFICLVYEKHGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F +++ + + G TG +D + + G+ H+ R++ Sbjct: 322 KMRTTNF-------WNFENNPMPDVFYTGNTGIEPVDIVINNIIKYGYCHHIERLMIVGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPDQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|72382565|ref|YP_291920.1| hypothetical protein PMN2A_0726 [Prochlorococcus marinus str. NATL2A] gi|72002415|gb|AAZ58217.1| conserved hypothetical protein [Prochlorococcus marinus str. NATL2A] Length = 496 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 44/337 (13%), Positives = 98/337 (29%), Gaps = 32/337 (9%) Query: 74 QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133 + I + + F + + Q+++ + Q Sbjct: 116 KNNIKLEIRKNDMFLTCPDISEEILNQKKIYGM---------------------QKFYKI 154 Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + ++L+ + + + + + V+ + Sbjct: 155 QRKSLNILIEKDGSPTGGAWNFDNMNRKKLPNSIEVPKIPTIKTNRLLNKAKKEVSTNYK 214 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 + E+ + L + Y S LSP ++ G+ Sbjct: 215 DYYGRIANFNYPLSHKDAEEWLDNFLIERFNLFGDYEDAIHSNHRTLWHSVLSPLINSGL 274 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 L+PRQ ++ E + I S + WREF + F + +K Sbjct: 275 LTPRQIIDKSWEFYQSNNIGINSYEGFVRQIIGWREFILLMYKRNSLELRNGNFWDFEDK 334 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + ++ G TG +D ++R + G+ H+ R++ L+ Sbjct: 335 P-------IPLSFYTGQTGIRPLDDSIRNILETGYAHHIERLMIVGNLMLLCRFHPNQVY 387 Query: 374 EYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 ++FM +D D + G Q++ + PY Sbjct: 388 KWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYI 424 >gi|284431214|gb|ADB84374.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus] Length = 123 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61 + W+ D R+ DN A+ A ++A+ + +++ R S RQ HF+ Sbjct: 72 VYWMSRDSRVQDNWAMIYAQELANAQNLPLYVVFCLTKRFLNASLRQFHFL 122 >gi|86609405|ref|YP_478167.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557947|gb|ABD02904.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 525 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 104/380 (27%), Gaps = 42/380 (11%) Query: 38 IAVFIATPEQWRQHGISARQSH----FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93 + V + +W S +++++ + L Q+G Y + ++ + ++ Sbjct: 36 VPVILIESHRWAS---SRNHHQQKLVLVWSAMRHFAQELQQRGYPVTYVEADSYAEPLQT 92 Query: 94 LDSYCL--QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP------- 144 Q R+ + + E R L L + + Sbjct: 93 WAKQHQLQQIRLMQPADIPVRDEIEKLRSTLPCPLLILENNHFLWTADQFIEWASGRKRL 152 Query: 145 ----------GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 + + P P +T + I Sbjct: 153 LLEDFYREGRRRFRILMDGPKPLGGRWNYDRENRHPPKPGMRYPRPLTFSPDAITQAVIA 212 Query: 195 RFFDYPFQAIDPMFPIGE--------QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 + + + G Q H + + + + S LS Sbjct: 213 KVRQHYGHHFGSLEGFGWAVTRAQALQVLDHFIHERLPHFGPWQDAMQAGEDFLFHSLLS 272 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 PYL++G+L+P + +++ + I S L WRE+ R + + Sbjct: 273 PYLNLGLLTPHEVIAAVEQAYHRGGIPLPSAEGFIRQILGWREYMRGFYEYQMPNGYAQN 332 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 ++ G T + + Q+ G+ H+ R++ S Sbjct: 333 NFFGHQRPLPEFFW-------TGKTDMACLQHTLDQIRRHGYAHHIQRLMVLSNFALISG 385 Query: 367 VDWRIGEEYFMSQLLD-GDL 385 + + E +F +D D Sbjct: 386 IQPQAVEAWFQDVFIDSYDW 405 >gi|213422286|ref|ZP_03355352.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 161 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC 223 ++ L + +P P IR++G ++ P +YP QA D FP+ E + LR FC Sbjct: 1 WLKRLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFC 60 Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283 + Y +RD PA+ GTS+LS L+ G LSPRQC +RL E L WLN Sbjct: 61 SQGADEYASRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGS--VWLN 118 Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ELIWREFYRHLM +YP++C +PFI WT+++ W ++ H Sbjct: 119 ELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPH 156 >gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri] gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri] Length = 484 Score = 46.0 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 66/443 (14%), Positives = 128/443 (28%), Gaps = 40/443 (9%) Query: 16 NDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSH-FIYASLLQVQKSL 72 D R + N AL A ++ + + + GI + F ++ ++L Sbjct: 42 RDARTSCNDALARATRMANGFGVPLVVAMHVGRDLSGRGIGGARRAVFGLEGRRELDEAL 101 Query: 73 SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 +G + + DD+ + C + + + + + L+ V+ Sbjct: 102 RGRGAA---TRTTIGDDAALGVLETCEAVNASAVVCDFTPLREGRATRATIARALECPVV 158 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFR--------KALIQNLVQADLRSLPVPAIRL 184 + V S + ++ +LV SL Sbjct: 159 EVDAHNVVPAWVASDKQEYAARTIRPKIRKKLDEFLTAPTVMDDLVVRAAGSLAQMETDW 218 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TS 243 V + I P + L +R+ P S Sbjct: 219 AALVADARANGAHVPEVHWIKPGEKAALASLLDPSVDSFLPDRLALYGERNKPTSPRAVS 278 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301 +LSPYL+ G L+PR+ + + + L +I RE + + P Sbjct: 279 RLSPYLNHGQLAPRRAAWEAVQLRGIVADEAIDSYLEEL--IIRRELSDNFCLYNPDYDS 336 Query: 302 ----CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + + + ++ T + +AA ++L +G MH +RM Sbjct: 337 LRGASQWAQDSLALHASDKREYVYDYATLERAKTHDELWNAAQKELYHLGRMHGFMRMYW 396 Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG------DLASNNGGWQW-AASTGNDSV------P 404 A +++ QL D D + G W A + Sbjct: 397 AKKILEWT--PSPEIALETAIQLNDTYALDGLDP-NGYVGCMWSIAGVHDQGWKERAVFG 453 Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427 R N ++FD G ++R Sbjct: 454 KVRYMNYAGCKRKFD-IGEYVRR 475 >gi|312093850|ref|XP_003147827.1| hypothetical protein LOAG_12265 [Loa loa] gi|307757007|gb|EFO16241.1| hypothetical protein LOAG_12265 [Loa loa] Length = 171 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 30 CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 + V+ +I P +H + Q F+ L ++ +LS+ + +N + Sbjct: 42 ANEHGVPVLVTYIYQPG--NRHNL--AQRKFLLEGLNCLENNLSRLHAPLLVIKANNNQE 97 Query: 90 SIEWLDSY 97 + + + Sbjct: 98 ATKIVLKL 105 >gi|114705215|ref|ZP_01438123.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506] gi|114540000|gb|EAU43120.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506] Length = 511 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 51/379 (13%), Positives = 116/379 (30%), Gaps = 46/379 (12%) Query: 42 IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYC 98 +A + +H R+ F+++++ + ++ + Y N E L Sbjct: 33 VADEANYVRHH--QRKIAFLFSAMRHFADDIRERDVTVDYVTLDDAENTGSFTEELKRAV 90 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 + + + E + + + L V ++ D + Sbjct: 91 KRHQPDSVVVTEPGEWRVLEMMRDWRETLDCPVEIRNDDRFICDHETFDKWAEGNKELRQ 150 Query: 159 TPFRKALIQN-------------LVQADLRSLPVPAIRLTGPVTPSNI------------ 193 F + + + D + R+T P P+ Sbjct: 151 EYFYREMRKYTSYLMDGNKPAEGKWNFDHDNREPLKKRITAPERPNYTVDETTEAVLDLV 210 Query: 194 -PRFFDYPFQAIDPMFPIGEQNALHILRKFC----KEKVYYYVEQRDIPAIQGTSQLSPY 248 RF ++ + +P+ + ALH LR F + Y R+ + S LS Sbjct: 211 GKRFGNHFGSLENFDYPVTRRQALHYLRWFLDEALPDFGTYQDAMREGAPLLFHSHLSAL 270 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF-YPSVCMGKPF 307 ++ G+L PR+ R ++ + + + + WREF R + P Sbjct: 271 INCGLLDPREVCERAEDAYREGKAPINAVEGFIRQIIGWREFIRGVYWREMPDYASSNKL 330 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 + ++ G T + + +++ + H+ R++ Sbjct: 331 NAQRKLPDFFW---------TGETDLNCLKQSFKEVRESAYNHHIQRLMVIGNFCLLCGF 381 Query: 368 DWRIGEEYFMSQLLD-GDL 385 D R +E+++ D + Sbjct: 382 DPREVQEWYLVVYHDAYEW 400 >gi|254381685|ref|ZP_04997049.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340594|gb|EDX21560.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 525 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C R + + S WRE+ HL ++ Sbjct: 282 HSLLSAPLNLGLLHPAECVERAEAAWRAGEAPLNSVEGFVRQIAGWREYVWHLYWYFGEE 341 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + T + D A + A+RQ+ GW H+ R++ Sbjct: 342 YRRSNALRHTAPLPSWWDELDADA-----VTARCLSTALRQVRDTGWTHHIPRLMVLGSY 396 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 397 ALQRGWDPEALTDWFHRSFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 444 >gi|81299980|ref|YP_400188.1| hypothetical protein Synpcc7942_1171 [Synechococcus elongatus PCC 7942] gi|23957791|gb|AAN40804.1| unknown [Synechococcus elongatus PCC 7942] gi|81168861|gb|ABB57201.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 503 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 61/437 (13%), Positives = 125/437 (28%), Gaps = 48/437 (10%) Query: 23 NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF-Q 80 + AL A S +++ V + E ++ ++ +++++ L +G Sbjct: 16 HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQGWTVDY 73 Query: 81 YHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 Q +F ++ + +V + I L + S + Sbjct: 74 VEQADSFQTAVSAWCQQYQIAELQVMEPADRSFRAIISSLELTSSLHWLSNCQFLWSTAE 133 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 Y+ + L+ + P T P Sbjct: 134 FTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTGLQPPPAAH 193 Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------------------ 234 + AI ++ L + + + Sbjct: 194 FLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTFGPYQDAMV 253 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 A S ++P L++G+L P + + ++ F + S L WRE+ L Sbjct: 254 SGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQAPIASVEGFIRQILGWREYMYGL 313 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++P + + W G T + +Q+ IG+ H+ R Sbjct: 314 HHYFPDTYGQSNWFEHDRPLPEFF-------W-TGQTDLHCLQQCFQQIEAIGYSHHIQR 365 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTG-------NDSVP 404 ++ + +D +E+F + LD D +N G A G S Sbjct: 366 LMILANFALIAGLDPWAVKEWFQATHLDAYDWVMETNVLGMGLFADGGKLASKPYAASAN 425 Query: 405 YFRIFNPTIQGKRFDPQ 421 Y + Q R+DP+ Sbjct: 426 YINRMSNYCQNCRYDPK 442 >gi|332307203|ref|YP_004435054.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174532|gb|AEE23786.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 496 Score = 45.2 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 94/352 (26%), Gaps = 22/352 (6%) Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128 Q L I D L ++ + + Sbjct: 82 QTRLFTLLIDHGVRHIHTLDPVDYLLKKRLEDNAYRADLQITWHKTPGFLNTQRQNSAYR 141 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 D + V + +P + Sbjct: 142 EHKNRWYMADFYQFQRKRMNILVENDQPVGGRWSYDHENRKKIPKRDLDKIPTMEFASKT 201 Query: 189 TPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PA 238 + +F +P ++P+ Q+A L F +++ + D + Sbjct: 202 SYHVAAIARLQKQFSHHPGNGQKIIYPVTHQDAQQWLDSFFEQRFRQFGPYEDAIVEGQS 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S L+P L+IG+L+P+Q + I S + WREF Sbjct: 262 WLYHSILTPMLNIGLLTPKQVISHALRYAKQHDISLASVEGFIRQIIGWREFM------- 314 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + W + ++ +G TG +D ++++ G+ H+ R++ Sbjct: 315 -RATYNDLGVSMRTANHWQHHRTISASFYRGDTGIDPVDDTIKRILQTGYCHHIERLMVL 373 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPYF 406 + +FM +D D + Q A + PYF Sbjct: 374 GGFFFLCEFEPNEIYRWFMDMFVDSYDWVMVPNVYAMSQHADGGQITTKPYF 425 >gi|119713715|gb|ABL97765.1| hypothetical protein MBMO_EB0-41B09.0035 [uncultured marine bacterium EB0_41B09] Length = 508 Score = 45.2 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 93/327 (28%), Gaps = 17/327 (5%) Query: 66 LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + K + +K I QY + + SIE L + + + ++ K Sbjct: 84 QNINKIIKEKNIGTLQYLEPDEYRLSIE-LKKLESIKNIKVESVDTEHFFVPKFYAKDFF 142 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 +H + + + + + K + Sbjct: 143 SEKKHWRMEEFYRNMRKKFSILMEGDKPIGEKWNFDSDNRKRWDGSPNTTEDFRPSHNHE 202 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQ 240 + +N Q + +PI + + + + K + D Sbjct: 203 ELFLEINNENIEHFGESQETNFRWPISREESVKLLDNFIAKDLVNFGDFQDALHDKNWRL 262 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYP 299 S LS L+ ++SP + + +E + + + S L WRE+ R A P Sbjct: 263 FHSFLSFSLNSKMISPLEVIRKAEEAYYEKDLPLSSVEGFIRQILGWREYIRGVYWANMP 322 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 F + +W + ++ Q + H+ R++ Sbjct: 323 GYDQHNFFKHNAKLPDWFWTGKTDMR---------CLSLSITQSLKNAYAHHIQRLMIIG 373 Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL 385 +D + ++++ +D + Sbjct: 374 NFSLLAGLDPKEVHKWYLGIYIDAYEW 400 >gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni] gi|238657317|emb|CAZ28395.1| DNA photolyase, putative [Schistosoma mansoni] Length = 490 Score = 45.2 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 62/402 (15%), Positives = 117/402 (29%), Gaps = 30/402 (7%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAV--------FIATPEQWRQHGISARQSHFIY 62 L W+ D R+ N A V V FIA PE S + + Sbjct: 58 LYWMSRDQRVQGN-----AIQGYTFFVFLVLLISKEIIFIAQPEDIS----SGCKHRWSD 108 Query: 63 ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + L Q +K +++ + + D L + F + + V++ Sbjct: 109 ENALFNQTDRIEKNFLYETYVAKSVVD----LAKLLNVGCLVTDFCPLRAPRSWVKKVTD 164 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + + + ++ + + + ++ I Sbjct: 165 ELPDNIPFCEVDAHNIVPVWCGSEKREYSARTIRSKLFQQSPKFLTDFPPIIKHTCSDKI 224 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 + P +++ P G Q L +L +F +++ + R+ PA Sbjct: 225 TVLPPPVNWESILSDYVGDKSVKPVDWAVPGTQAGLEVLYEFISKRLKKFDPHRNDPAHP 284 Query: 241 GTSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S LSP+L G ++P R + + + + F H + Sbjct: 285 ALSGLSPWLHFGQIAPQRAVLEVVAVQKHFGRSADIFIEECFNRRELAENFCFHTPFYDS 344 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 +K + TG + +AA RQL G MH LR Sbjct: 345 IKGAYDWARESLMTHSTDKRDPAYSKTQMETAQTGDDLWNAAQRQLVLKGKMHWFLRQYW 404 Query: 358 ASFLVKDLLVDWRIGEEYFMS----QLLDGDLASNNGGWQWA 395 A +++ + + LDG + G WA Sbjct: 405 AKKILEWCAEGPESAIQIAIYLNDRYSLDGTDPNGYVGIMWA 446 >gi|118594164|ref|ZP_01551511.1| hypothetical protein MB2181_00810 [Methylophilales bacterium HTCC2181] gi|118439942|gb|EAV46569.1| hypothetical protein MB2181_00810 [Methylophilales bacterium HTCC2181] Length = 512 Score = 44.8 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 112/361 (31%), Gaps = 22/361 (6%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114 Q +F L ++ + QK I Q + L + + ++ + Sbjct: 81 ENQHNF----LDNLRAIIHQKKIDVLEFQDPDEHRLDLLLGQLKHSLNIPVERISTEHFL 136 Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174 L + + + + I + K + + + Sbjct: 137 TSRDEVGLFFTDKKQWRMESFYRYMRIKHEVLIEGGSPIGGKWNYDASNRMRWDGKPPEP 196 Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234 +++ A + +PI + + +L +F K + Y+ + + Sbjct: 197 EDSRPKHNHKELLEEINSVNIEHFGEANAENFRWPIDRKESFALLEQFIKNNLRYFGDFQ 256 Query: 235 DIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 D S LS L+ +L+P + ++ +++ I + L WRE+ Sbjct: 257 DAMHSDSWRLFHSFLSFSLNTKMLAPLEVIKMVEVSYLEDSIPLNAVEGFIRQILGWREY 316 Query: 291 YRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 R + P F T+ +W G T + +++ Q T + Sbjct: 317 IRGIYWAKMPEYSHLNYFNYDTDLPKWFW---------TGKTKMNCLASSITQSLTHSYA 367 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405 H+ R++ +D + +++ +D +L + G Q+A + PY Sbjct: 368 HHIQRLMVIGNFSLLAGIDPQKVHYWYLGIYIDAFEWVELPNTIGMSQYADGGLLATKPY 427 Query: 406 F 406 Sbjct: 428 V 428 >gi|120613151|ref|YP_972829.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax citrulli AAC00-1] gi|120591615|gb|ABM35055.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax citrulli AAC00-1] Length = 533 Score = 44.8 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 62/415 (14%), Positives = 110/415 (26%), Gaps = 58/415 (13%) Query: 20 ITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79 + D AL AA P + + + + G+ Sbjct: 99 LAD--ALRAAIRTHR----------PRRLVMTAPGDWRVW------KALSAVAADAGLPL 140 Query: 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139 + +F ++ + Q L Y R L++ R D+ Sbjct: 141 ETRPDRHFFATVREFADFRRQLAGRPLRLETFYRAMRRRHGILMDGRQPEGGAWNYDKDN 200 Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 + A+ + ++Q R L P + Sbjct: 201 RRPFG---PQGPGMVPGRCRFEPDAITREVLQMVARRFGDHPGALESFAWPVTRAQALHA 257 Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259 +D P + S LS L++ ++ PR+ Sbjct: 258 LADFVDHRLPAFGPFQDAMWPGEPWLYH---------------SHLSAALNLKLIHPREV 302 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + + + S L WRE+ R + P Sbjct: 303 VAATEAAYRSGRVPLASAEGFIRQILGWREYVRGIYWTEM---------PSYRDRNALGA 353 Query: 320 SHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 L AW G T F + A+RQ G+ H+ R++ L V + ++++ Sbjct: 354 DAPLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRPQAVHAWYLA 413 Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRFDPQG 422 +D +L + G Q+A S PY R+ P R DP Sbjct: 414 VYVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCA-TCRHDPDA 467 >gi|70939369|ref|XP_740236.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56517812|emb|CAH84909.1| hypothetical protein PC301304.00.0 [Plasmodium chabaudi chabaudi] Length = 204 Score = 44.8 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 11/165 (6%) Query: 11 LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66 L+ L D RI DN ++ A + ++A +I EQ+ R + L Sbjct: 34 LLLLTRDFRIADNWSIIYAHDLAKKNKCNLLACTYINRKEQFT-----ERHINIKLKVLK 88 Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 +++ + I F D+ +E+L + + ++ + + + Sbjct: 89 NLEEEFKKLNIPFYVIPIFMIDEFMEFLR--IQEIKTVVCDFHPLEYQKQFVENLVHMSN 146 Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + + + +++ + + + L L++ Sbjct: 147 KKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIE 191 >gi|311747651|ref|ZP_07721436.1| photolyase protein [Algoriphagus sp. PR1] gi|126575637|gb|EAZ79947.1| photolyase protein [Algoriphagus sp. PR1] Length = 493 Score = 44.8 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 56/403 (13%), Positives = 118/403 (29%), Gaps = 44/403 (10%) Query: 40 VFIATP-EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 +++ ++Q+ ++ F AS+ Q+ L +KG Y ++ I + Sbjct: 26 IYLIEEFLFFKQYNFHKQKIAFHRASMKAFQRFLEKKGNKVHYIDSNSELSDIRNFSNEI 85 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 Q+++ ++ + +R K + + G + + Sbjct: 86 DQKKIKEVHCIDPVDDWLEKRIKKMAGSCDLTFYENPAFLNSKKDLGGFFKPDKKSFFQT 145 Query: 159 TPFRKALIQNLV-------------------QADLRSLPVPAIRLTGPVTPSNIPRFFDY 199 T +++ + + + P T Sbjct: 146 TFYKQQRKKRKILLDKNQDPEGGSWTYDKENRKKYPKGKTPPPIQFPDATGFWEEACSYT 205 Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------DIPAIQGTSQLSP 247 D + +Q I + + +++ R + S LSP Sbjct: 206 KKYFQDNPGKLNKQPIYSINTEQAEAWFKQFLKSRFHEFGTYEDAIVKEESYLNHSLLSP 265 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307 +++G L P + S + WREF R + S K F Sbjct: 266 LINVGFLLPEFVLEDSLTFAKSENVPINSTEGFVRQIIGWREFIRGMYESKGSFSRTKNF 325 Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367 W + ++ G TG +D ++++ G+ H+ R++ + Sbjct: 326 --------WGFKRKIPASFYDGSTGIEPVDQTIKKVLETGYCHHIERLMILGNFMLLCEF 377 Query: 368 DWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 D +FM +D D N G Q+A + PY Sbjct: 378 DPDEVYRWFMELFIDAYDWVMVPNVYGMSQFADGGLFATKPYV 420 >gi|269795906|ref|YP_003315361.1| deoxyribodipyrimidine photolyase-like protein [Sanguibacter keddieii DSM 10542] gi|269098091|gb|ACZ22527.1| deoxyribodipyrimidine photolyase-related protein [Sanguibacter keddieii DSM 10542] Length = 532 Score = 44.8 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 13/169 (7%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S L+ L++G+L PR+ + + +G + L + Y Sbjct: 290 HSLLTASLNVGLLDPREVVQAVLD---------DAGPDTPLASVEGFVRQVIGWREYMRA 340 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + L W+ TG +D + ++ T G+ H+ R++ Sbjct: 341 TYRVHGRRMRTSNRLDHQNRLGDGWRDATTGLAPVDLVVSRVLTTGYAHHIERLMVLGSA 400 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + L V E+F + +D D N Q+AA + PY Sbjct: 401 MCLLRVHPDEVYEWFTAMFVDAYDWVMVPNVYAMSQFAAGDAVTTKPYV 449 >gi|220934569|ref|YP_002513468.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7] gi|219995879|gb|ACL72481.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7] Length = 524 Score = 44.8 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 48/416 (11%), Positives = 111/416 (26%), Gaps = 61/416 (14%) Query: 19 RITDNK--ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76 R+ + +L A A++ PE+ + L + + G Sbjct: 85 RLGHHPHGSLAEALATDLARLR------PERVILTRPGDHRV------LQSLTRVCDSAG 132 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + + + ++F S+E + +++ + + R + L Sbjct: 133 VPLEIREDAHFLVSLESFRHWAGRRK-------QTRLEHFYRHVREQMGVLMEDGEPAGG 185 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 + L A + L + + + G + + P Sbjct: 186 RWNFDTENRKPLPRAGPGMLRAPLGFEP--DALTREAMADVERHFPDHPGSLASFDWPVS 243 Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 + A++ + + Y + L++ ++SP Sbjct: 244 PEQARAALEDFIDHRLPAFGPYQDALWTGEPWLYHARIS-----------AALNLKLISP 292 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYPSVCMGKPFIPWTEKIE 315 R+ + + + S L WRE+ R P Sbjct: 293 REVIEAAEAAWREGRAPLASVEGFIRQVLGWREYVRGLYWQHMPEWLEWNALEAGEALPG 352 Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 + + + Q +G+ H+ R++ + L V E+ Sbjct: 353 FYWTGETDMR---------CLAETLGQTLELGYAHHIQRLMVTGLFAQLLGVRPPALHEW 403 Query: 376 FMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 +++ +D +L + G Q+A S PY G +I+ Sbjct: 404 YLAVYVDAVEWVELPNTLGMSQYADGGRMASKPYV-------------ASGQYIKR 446 >gi|319954985|ref|YP_004166252.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga algicola DSM 14237] gi|319423645|gb|ADV50754.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga algicola DSM 14237] Length = 493 Score = 44.4 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 56/415 (13%), Positives = 114/415 (27%), Gaps = 50/415 (12%) Query: 34 DAKVI----AVFIATP-EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC-SNF 87 ++ V+ +++ ++ + ++ F AS+ + L Y + + Sbjct: 15 NSPVLEFDAPIYLIEEYLFFKHYKFHKQKIAFHRASMKCYEAFLKANNHEVIYIEATEDV 74 Query: 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-------------------RDKLLEKRLQ 128 D + + + R E Sbjct: 75 SDIRTLIKQLNKEGINQLNYIEVSDYWLRKRIEETSKAYTITLKEFDSPLFINNKEDLTH 134 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIRLTGP 187 K + + K P + + P Sbjct: 135 FFKKDKKSFHQTTFYKQERKRLGILVDKNDEPMGGKWTYDTENRKKYPAKKTPPSIHFPE 194 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------D 235 VT + D + ++ I + K ++EQR Sbjct: 195 VTTYHKEAKEYVDLHFSDHYGALTKEVYYPIDFEAAKVWFDQFLEQRFSEFGIYEDAIVG 254 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 +I S ++P L++G+L+P + I S + WREF R + Sbjct: 255 ENSILNHSVITPMLNVGLLTPHLIIDTTIAYAEKHDIPINSLEGFVRQIIGWREFMRGMY 314 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + F W + +++ G TG ID ++++ G+ H+ R+ Sbjct: 315 ELKGVYQRTRNF--------WGFTRKIPKSFYTGTTGIVPIDTTIKKILKTGYCHHIERL 366 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + D ++FM +D D N G Q+A + PY Sbjct: 367 MVLGNFMLLCEFDPEEVYKWFMELFIDSYDWVMVPNVYGMSQFADGGSFATKPYI 421 >gi|254432578|ref|ZP_05046281.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC 7001] gi|197627031|gb|EDY39590.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC 7001] Length = 527 Score = 44.4 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 15/158 (9%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 LSPYL++G+L P + RL++ + S L WRE+ L ++ S Sbjct: 272 WHGLLSPYLNLGLLHPLEVIQRLEQAGRERGTPLASLEGVIRQILGWREYTHGLYHWFGS 331 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + +S G +G +++ +L T G+ H+ R++ + Sbjct: 332 DYPARNHFQHHRPLPPWFES-------LGGSGLNCLESVFAELATSGYAHHIQRLMVLAN 384 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 +D + +F +D G W T Sbjct: 385 YGLIAGLDPQALTAWFHRMFID--------GHDWVMQT 414 >gi|225872026|ref|YP_002753480.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum ATCC 51196] gi|225794372|gb|ACO34462.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum ATCC 51196] Length = 548 Score = 44.4 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 105/370 (28%), Gaps = 23/370 (6%) Query: 27 YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 + A + + ++ TP + A + H + +L +Q +++ + + Sbjct: 76 HFALKQARRGIKIIYEFTPGIFADGLEQATRHHRLS-ALTMMQP--AEREMSLDVEEARV 132 Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 ++ ++ + + + L R + + +L + Sbjct: 133 RGIPLQLVED---------TTWCSTESDFDSVFAPTTKHFLMDRFYRRMRQKTGILMQPN 183 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 + R Q V R P + + P F P Sbjct: 184 GEPIGGKYSYDAENRRPYRGQPPVPERPRFHPDSITQEALHLVAREFPSHFGTLDGFDLP 243 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKE 265 + A + + + S+LS ++I L PR+ + + Sbjct: 244 VTQAQADEAWSFALEHLLPHFGPFEDAMAHNEPDLFHSRLSALINISRLLPRRLIDDVAR 303 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL--- 322 I S L WREF RHL + + + Sbjct: 304 AAHSERIPLASAEGFIRQILGWREFMRHLHRRTDGYRQLPGQRNNSSSDDPYAGAEPSAL 363 Query: 323 ------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 A+ +G +D + Q+ GW H+ R++ S L L V R ++F Sbjct: 364 NAHRPLPAAFWGRRSGLHCLDTVIDQVWREGWSHHITRLMVLSNLSTLLGVSPRALTDWF 423 Query: 377 MSQLLD-GDL 385 +D D Sbjct: 424 WIAYIDAYDW 433 >gi|258405943|ref|YP_003198685.1| deoxyribodipyrimidine photolyase-like protein [Desulfohalobium retbaense DSM 5692] gi|257798170|gb|ACV69107.1| deoxyribodipyrimidine photolyase-related protein [Desulfohalobium retbaense DSM 5692] Length = 502 Score = 44.4 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 77/276 (27%), Gaps = 12/276 (4%) Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194 +L + ++ + V P + Sbjct: 153 MRKRCQILLDDHGKPLGGKWTFDTANRKRYRGEPPVPDLPHLTGGPEKDSALDRVRNEFA 212 Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254 P + + + + + S L+ L+IG+L Sbjct: 213 NHPGEPDLTMPWTHAQAQAWLEDFVDRRLPSFGPFQDALSSKEPFLFHSLLASSLNIGLL 272 Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 +P Q + + + + S L WREF R + + F + + Sbjct: 273 TPNQVLDTVLAKHRQSPLPLASLEGFVRQILGWREFVRGMYRHHGRRQRSTNFWGHSRPL 332 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 A+ TG P +D A+++ + + H+ R++ + + Sbjct: 333 PE--------AFYTASTGIPPVDLAIQRALSNAYCHHIERLMVLGNFMLLCEIAPDDICT 384 Query: 375 YFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 +FM +D D N G Q+A S PY Sbjct: 385 WFMEMCIDSYDWVMVPNVYGMSQYADGGLMSSKPYI 420 >gi|239981847|ref|ZP_04704371.1| hypothetical protein SalbJ_20596 [Streptomyces albus J1074] gi|291453703|ref|ZP_06593093.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291356652|gb|EFE83554.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 510 Score = 44.4 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 9/155 (5%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P +C R + + S WRE+ HL + + + Sbjct: 280 DPAECVERAEAAWRAGEAPLNSVEGFVRQIAGWREYVWHLYWHFGEEYRTTNALGHHAPL 339 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 A + + QL GW H+ R++ D + Sbjct: 340 PDWWSDLDADA-----VTAHCLSTVLAQLRDTGWTHHIPRLMVLGNYALQRGWDPAALTD 394 Query: 375 YFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405 +F +D D N G Q+A + PY Sbjct: 395 WFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 429 >gi|171915248|ref|ZP_02930718.1| deoxyribodipyrimidine photolyase-related protein [Verrucomicrobium spinosum DSM 4136] Length = 514 Score = 44.4 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 109/351 (31%), Gaps = 18/351 (5%) Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 Q+++++ + + ++S + V ++ I + + Sbjct: 87 KQLREAIRRLRPKKLVMVEAGEWSVACEIESVAAKTGVELEVRTDRHFICTREMFQKHAE 146 Query: 126 RLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + + + R++ ++ + + Sbjct: 147 GRKQLRMEFFYREVRQHTGVLMEKGKPVGGQWNFDHDNRESFGKSGPGLRMPPMRFVPDD 206 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242 LT V F +P + +P+ A L F K ++ + +D Sbjct: 207 LTKGVIADVEKHFAKHPGALAEFDWPVTTVQARKALDDFIKHRLAEFGSFQDAMWTNEPW 266 Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LS +++ +L PR+ ++ + + + L WRE+ R + Sbjct: 267 LYHSRLSAAMNLKLLDPREVIAAAEKAYHEGRAPLAAVEGFIRQILGWREYVRGIYCH-- 324 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 +I ++ G T + A+ Q +G+ H+ R++ Sbjct: 325 ---FMPDYIERNAMHAEHELPDFYW---TGDTEMNCLRDAIGQTLRLGYAHHIQRLMVTG 378 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 V R E++++ +D +L + G Q+ S PY Sbjct: 379 LFALLYGVQPRRVHEWYLAVYVDAVEWVELPNTLGMSQYGDGGVMASKPYV 429 >gi|56750388|ref|YP_171089.1| hypothetical protein syc0379_d [Synechococcus elongatus PCC 6301] gi|56685347|dbj|BAD78569.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 503 Score = 44.4 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 62/437 (14%), Positives = 125/437 (28%), Gaps = 48/437 (10%) Query: 23 NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF-Q 80 + AL A S +++ V + E ++ ++ +++++ L +G Sbjct: 16 HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQGWTVDY 73 Query: 81 YHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138 Q +F ++ + +V I L + S + Sbjct: 74 VEQADSFQTAVSAWCQQYQIAELQVMDPADRSFRAIISSLELTSSLHWLPNCQFLWSTAE 133 Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198 Y+ + L+ + P T P Sbjct: 134 FTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTGLQPPPAAH 193 Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR------------------------ 234 + AI ++ L + + + Sbjct: 194 FLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTFGPYQDAMV 253 Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294 A S ++P L++G+L P + + ++ F + S L WRE+ L Sbjct: 254 SGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQAPIASVEGFIRQILGWREYMYGL 313 Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354 ++P + + W G T + +Q+ IG+ H+ R Sbjct: 314 HHYFPDTYGQSNWFEHDRPLPEFF-------W-TGQTDLHCLQQCFQQIEAIGYSHHIQR 365 Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTG-------NDSVP 404 ++ + L +D +E+F + LD D +N G A G S Sbjct: 366 LMILANLALIAGLDPWAVKEWFQATHLDAYDWVMETNVLGMGLFADGGKLASKPYAASAN 425 Query: 405 YFRIFNPTIQGKRFDPQ 421 Y + Q R+DP+ Sbjct: 426 YINRMSNYCQNCRYDPK 442 >gi|87303557|ref|ZP_01086340.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 5701] gi|87281970|gb|EAQ73933.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. WH 5701] Length = 504 Score = 44.4 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%) Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375 WN L W G TG P +DAA+ +LN G+ H+ R++ S L+ + + + Sbjct: 334 WNHRRRLAPCWTDGSTGLPPLDAAIERLNRTGYNHHIERLMVISNLMLLCEIHPAEVQRW 393 Query: 376 FMSQLLD-GDLASN---NGGWQWAASTGNDSVPYF 406 FM + LD + G Q + + PY Sbjct: 394 FMERYLDSYEWVMGPNVYGMGQMSDGGIFATKPYI 428 >gi|258652969|ref|YP_003202125.1| deoxyribodipyrimidine photolyase-like protein [Nakamurella multipartita DSM 44233] gi|258556194|gb|ACV79136.1| deoxyribodipyrimidine photolyase-related protein [Nakamurella multipartita DSM 44233] Length = 500 Score = 44.1 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 9/171 (5%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LS L++G+L P + +R+++ + + L WR++ HL + Sbjct: 254 WMAHSLLSAPLNLGLLDPLEVVHRVEDAYRGGQAPIAAAEAVVRQILGWRDYVWHLYWYL 313 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + A + + + L GW+H+ R++ Sbjct: 314 GPDYPAGNGLRARRGLPDWFAELDADAVQA-----RCLSGVLADLRDHGWVHHIPRLMVL 368 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 D ++F +D + A+ G Q+A + PY Sbjct: 369 GNFALQQGWDPAELTDWFHRCFVDGYEWVMVANVVGMSQFADGGRITTKPY 419 >gi|254489714|ref|ZP_05102910.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga thiooxidans DMS010] gi|224465123|gb|EEF81376.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga thiooxydans DMS010] Length = 517 Score = 44.1 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 104/351 (29%), Gaps = 19/351 (5%) Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126 ++ +L + + + L+S+ Q ++ + Q+ I + Sbjct: 85 ALEATLKNNNVSRVRCVLAGDMTVVSRLESFFSQYNLSIEWLADQHFITRQGEFQQWLDE 144 Query: 127 LQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + + + R++ + Q + Sbjct: 145 RKQPRMEHWYRHLRKDRQILMDDNQAPIGGQWNFDKDNRRSFDKKGPQLPSSNSRFKHDA 204 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 +T V + P D +P+ + AL L F K ++ + + +D + Sbjct: 205 ITKHVIQDVETFCAELPGSLADFNWPVTRKQALQQLDAFIKYRLPSFGDYQDAMWTEQPF 264 Query: 244 QLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 LS + P + N+ ++ + + + L WRE+ R L Y Sbjct: 265 LFHACLSSSLNLKLLNPLEVINKAEQAYYENNAPLNAVEGFIRQVLGWREYIRGLYWSYR 324 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + + W T + ++ Q+ G+ H+ R++ Sbjct: 325 EHWLDYNALDHQRALPSFY-------W-HADTDMKCMHHSISQVLEHGYGHHIQRLMVTG 376 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 + +++ +D ++ + G Q+A S PY Sbjct: 377 LFSLLWGIKPDAIHRWYLGMYVDAVAWVEIPNTLGMSQYADGGIVGSKPYI 427 >gi|284031886|ref|YP_003381817.1| deoxyribodipyrimidine photolyase-like protein [Kribbella flavida DSM 17836] gi|283811179|gb|ADB33018.1| deoxyribodipyrimidine photolyase-related protein [Kribbella flavida DSM 17836] Length = 492 Score = 43.7 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 5/148 (3%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LS L++G+L P + + ++ + S + WR++ HL + Sbjct: 245 WMAHSLLSATLNLGLLDPMEAVEQAEDAYRAGAAPLASVEGFVRQLIGWRDYMWHLYWHF 304 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + + + G G + +R + GW+H+ R++ Sbjct: 305 GPDYRRSNQLAARQPVPEWFTELD----ADGTVGARCLSEVLRGVREHGWVHHIPRLMVL 360 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 ++F +D D Sbjct: 361 GNYALQRGWCPDEVTDWFHRSFVDGYDW 388 >gi|332653573|ref|ZP_08419318.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16] gi|332518719|gb|EGJ48322.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16] Length = 384 Score = 43.7 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 19/271 (7%), Positives = 32/271 (11%), Gaps = 2/271 (0%) Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163 + + + V S + Sbjct: 100 NRSYRASGRCWCNRSYRASGCRWCHWSYRTSGCRRCVWPLWSSGYRWCDWSHWTSGRRWC 159 Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223 R P + Sbjct: 160 NWPHRTSGRRWRDRAHRTSGRRWCNWPHWSSGHCWHCGCNRSYRTSGYRWCDWSHWSSGH 219 Query: 224 KEKVYYYVEQ-RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282 + + Y R S + + S CW + S Sbjct: 220 RWCNWSYWSSGRRWCNWSYWSSGYRWCNWSYWSSGCCWCNWPYRTSGCHWYNRPHWSSGC 279 Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-KQGYTGFPIIDAAMR 341 W Y S P W + + Sbjct: 280 RWHNWSHRSSGYCWCYRSHWSSGHCWPCRCNWPHRSYRACRCDWSCWRHRPRRCYRSHRA 339 Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 +R R S Sbjct: 340 CRCYRSCWCHRPRRCYRSHWPYWPCRQRGRC 370 >gi|318041432|ref|ZP_07973388.1| deoxyribodipyrimidine photolyase-like protein protein [Synechococcus sp. CB0101] Length = 516 Score = 43.7 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 24/191 (12%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + LSPYL++G+L P + RL++ ++ + L WRE Y H + + Sbjct: 268 WHALLSPYLNLGLLHPLEVIRRLEQAGLEQQVPLAGLEGVIRQILGWRE-YTHGLYHWFG 326 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + G +G +D +L G+ H+ R++ + Sbjct: 327 SDYPRLNHFHAAVPLPVWFD------QLGGSGLRCLDTVFTELRRSGYAHHIQRLMVLAN 380 Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF----RIFNPTIQGK 416 +D + +F +D G W T + F R + K Sbjct: 381 YGLIAGLDPQALTAWFHRMFID--------GHDWVMQTNVIGMGLFADGGR-----LASK 427 Query: 417 RFDPQGTFIRH 427 + G +I+ Sbjct: 428 PYAASGNYIKR 438 >gi|148242302|ref|YP_001227459.1| deoxyribodipyrimidine photolyase-like protein protein [Synechococcus sp. RCC307] gi|147850612|emb|CAK28106.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp. RCC307] Length = 508 Score = 43.7 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 41/336 (12%), Positives = 85/336 (25%), Gaps = 25/336 (7%) Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L Q+GI + ++ Q + + + + Sbjct: 84 LKQQGISRLVVMAPPDRPIRQAIERLSQQPEWPCEL-EWIENNQFLWIAEEFSRWAGSKK 142 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTGP 187 + + + + P + Sbjct: 143 QLRMEFFYREGRRRFDVLMDGDQPQGGQWNFDQDNRKPPPKGLEGPEPLWFEPDAITSAV 202 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQGT 242 ++ N DP Q + + Y Sbjct: 203 ISKLNRLAERYELPGTSDPFRWGVSQQQAQEVLEHFIATRLEGFGPYQDAMVSGQPTLWH 262 Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302 + +SPY+++G+L P +L+ + I S L WREF L + Sbjct: 263 ALISPYINLGLLQPLAVIRQLEHAGREREIPLASLEGVIRQLLGWREFTHGLYHHFGEDY 322 Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362 + E + + G +G +D + +LN G+ H+ R++ + L Sbjct: 323 SHSNALEALEPLPEFLH-------QLGGSGMGCVDTVLGELNERGYAHHIQRLMVLTNLG 375 Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398 + + +F +Q +D W T Sbjct: 376 LMAGWNPQDLTSWFQAQFVDAH--------HWVMQT 403 >gi|15789886|ref|NP_279710.1| hypothetical protein VNG0705C [Halobacterium sp. NRC-1] gi|169235607|ref|YP_001688807.1| hypothetical protein OE2049R [Halobacterium salinarum R1] gi|10580288|gb|AAG19190.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726673|emb|CAP13459.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 503 Score = 43.7 bits (101), Expect = 0.075, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 94/336 (27%), Gaps = 21/336 (6%) Query: 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135 G + +N + + L + + + Sbjct: 86 GDDLVVQRPANHGTA-DRLRELVAARGGSLRVVANAQFRCSPAQFDDWMGTEPPFKHRPF 144 Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195 + + + ++ + + D S+ P + Sbjct: 145 YRHMRRETGYLMRDDDTPEGGDWSYDDQNQETPPAEYDSPSVGGFEYDEHVPAVRDWVAT 204 Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSI 251 FD +P+ + A L F +++ + D S LS ++I Sbjct: 205 EFDTWGDPDGFDWPVTREQATRALESFVADRLAGFGPYEDAVLADDWHLEHSLLSAAVNI 264 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310 G+L P + + + + P + ++ +LI WREF RH+ + Sbjct: 265 GLLHPEEVADAALDAYRSRDDIPLNSIEGFVRQLIGWREFMRHVYRHQMPGLATANQLGA 324 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + W T + +A ++ G+ H+ R++ S + Sbjct: 325 DRDLPPLY-------WTPTATDMACLGSAAGRVYDRGYAHHIERLMVLSNFALTYGARPQ 377 Query: 371 IGEEYFMSQLLD-GDLA--SNNGGWQWAAST-GNDS 402 E+F +D D N G + G D+ Sbjct: 378 ALTEWFHGGFVDAYDWVVTPNVVG----MGSFGTDA 409 >gi|170078893|ref|YP_001735531.1| hypothetical protein SYNPCC7002_A2298 [Synechococcus sp. PCC 7002] gi|169886562|gb|ACB00276.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 511 Score = 43.7 bits (101), Expect = 0.077, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 105/382 (27%), Gaps = 36/382 (9%) Query: 31 HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS 90 S V+ I + RQ ++ +++++ + L Q G Y ++F + Sbjct: 25 QRSTTPVLL--IEAADYARQRPYHGQKLVLVWSAMRHFAQELEQAGWSVHYAIAADFQSA 82 Query: 91 IE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + + V + + K + + S + Sbjct: 83 LTDWIATAGITELWVMQPSDRPFETFIQTLDLPCSLKFIPNNHFLWSRAEFHNWAKNRKR 142 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 Y+ K L+ Q P N P+ + + Sbjct: 143 LVLEDFYRAGRKRFKILLDEAQQPLGGQWNFDKDNRKPPKKDLNPPQPLTFAPDELTQAV 202 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------------------------GTSQ 244 + + + + + + + Sbjct: 203 INRVKALGLVTYGQLELFRWAVTRTQALQVFEHFLATGLEKFGTFQDAMVTGEYTLWHGL 262 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 +SPYL++G+L P + + + I + L WRE+ L + + Sbjct: 263 ISPYLNLGLLHPWELIKKAEAIREQKAIALNNLEGFIRQILGWREYLHGLYHYVGADYAQ 322 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 K + + W T + ++Q+ G+ H+ R++ S Sbjct: 323 KNHFNHQQPLPDFY-------WDSRKTDLNCLKQVLQQVEQTGYAHHIQRLMILSNFALI 375 Query: 365 LLVDWRIGEEYFMSQLLD-GDL 385 L V + E +F + +D D Sbjct: 376 LGVKPQALEAWFHAAFIDAYDW 397 >gi|292655388|ref|YP_003535285.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii DS2] gi|291372510|gb|ADE04737.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii DS2] Length = 498 Score = 43.3 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 98/367 (26%), Gaps = 45/367 (12%) Query: 49 RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD------------------- 89 + ++ ++A++ + L ++G Y Q F + Sbjct: 33 DRLPYHPQKLALVFAAMRHFRDDLRERGYEVTYLQTETFGEGLDRYFDAAPGDDLVVMDP 92 Query: 90 ----SIEWLDSYCL---------QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + E L + + + E +H Sbjct: 93 PSHGAGERLRGLVSARGGSLTLVENDLFLTTPADFDDWAGDADSYRQEHWYRHARRETGV 152 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 P G N+ Q + + D + V + P Sbjct: 153 LMDGDDPVGGEWNYDDQNRETPPEGWTPPEAPRFEPDETTREVIELVRERYPDAWGSPEP 212 Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 F +P + + + + D S LS ++G+L P Sbjct: 213 FVWPVTREAARQALSHFVEVRLPEFGPYQDAMV-----DGEWALCHSLLSAATNLGLLHP 267 Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 R+ ++E + S L WREF RH+ + TE + Sbjct: 268 REAVEAVEEAYERGDAPLNSAEGFVRQVLGWREFVRHVYRRSMPELAEANQLDQTEPLP- 326 Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376 +A+ G T + A+ + G+ H+ R++ S VD + +F Sbjct: 327 -------EAYWTGETDMNCLSEAVGHVRDRGYAHHIERLMVLSNFALVYGVDPAELDRWF 379 Query: 377 MSQLLDG 383 +D Sbjct: 380 HLGFVDA 386 >gi|16330750|ref|NP_441478.1| hypothetical protein slr1343 [Synechocystis sp. PCC 6803] gi|1653243|dbj|BAA18158.1| slr1343 [Synechocystis sp. PCC 6803] Length = 504 Score = 43.3 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 106/387 (27%), Gaps = 38/387 (9%) Query: 29 ACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85 A + +V + I + E RQ ++ +++++ + L +G Y + Sbjct: 18 ALKSHQGDRSQVPVLLIESAEFARQRPYHRQKLVLVWSAMRHFAEDLRAEGWSVTYEIAA 77 Query: 86 NFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143 +F + +V + L + S +D Sbjct: 78 DFLTPLHHWLKTQGVSHLQVMAPGDRPFEAWLKSLTLPCELTLLPNNHFLWSREDFSAWA 137 Query: 144 PGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSLPVPAIRLTGPVTPS 191 Y+ + L+ + + P L+ P Sbjct: 138 GDRKRLLLEDFYRAGRKRWQILMVDDQPVGGRWNFDQDNRKPAKKNLSPPKPLSFPPDDI 197 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----------- 240 + + + + Y+ Sbjct: 198 TQQVIERIEQLNLPGYGQLSGFQWGVSRQDALQGLKYFVDVGLSQFGTYQDAMVMGQKTL 257 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH-LMAFYP 299 S +SPYL++G+L+P + F I + L WRE+ + Sbjct: 258 WHSLISPYLNLGLLTPLEVIEAATNAFATQDISLNNVEGFIRQVLGWREYMQGIYQWVDE 317 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 G F E+ W+ +T + + Q+ G+ H+ R++ S Sbjct: 318 DYGQGNWFNHDFPLPEFY--------WQSSHTKMNCLATVLNQVEETGYAHHIQRLMVLS 369 Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL 385 + V+ + +++F + +D D Sbjct: 370 NFALIVGVNPQKLQDWFHAAFIDAYDW 396 >gi|291245135|ref|XP_002742447.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 1032 Score = 43.3 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 44/233 (18%), Gaps = 6/233 (2%) Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 N + + + + I + + L+ + N Sbjct: 259 NNCFNMEHQCPEYYFQCDEGRVCIPQWYRCDGDNDCQDTLDETGCTNRSIDVIDFTCHAN 318 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + + +P + + Y + E Sbjct: 319 --EFKCETECIPDVWVCDGFIDCPSAEDEHYCHMTVINGCAEHEFMCDVSQCIPNSWLCD 376 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 V+ D + L + + ++ + Sbjct: 377 GIVDCFDQTDEIIYNCLGGIGECFYDTSGTDYRGWTNTTINGKVCQNWSEQIPHQHSYTP 436 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341 Y + + C P W + + W G P ++ Sbjct: 437 NNYSNHGIGTHNYCR----NPSESSATWCYTTDPMVRWDWCDIGEPGVNCNNT 485 >gi|302547631|ref|ZP_07299973.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC 53653] gi|302465249|gb|EFL28342.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC 53653] Length = 502 Score = 43.3 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 9/170 (5%) Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 SQLS L++G+L P +C +R + + D + WRE+ HL + Sbjct: 257 MCHSQLSAPLNLGLLHPAECVDRAERAWRDGAVPLAGAEGFVRQIAGWREYVWHLYWHFR 316 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 G+ + T + A + + Q+ GW H+ R++ Sbjct: 317 EDYRGRNALRHTAPLPGWFLDLDADA-----VTAHCLATVLAQVRDTGWTHHIPRLMVLG 371 Query: 360 FLVKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 D ++F +D D + G Q+A + PY Sbjct: 372 SRALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGLMTTKPY 421 >gi|193795850|gb|ACF21978.1| CPD1 [Cercospora zeae-maydis] Length = 72 Score = 42.9 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 40/72 (55%), Positives = 49/72 (68%) Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 E+ WREFY+H++A +P VCM KPF +EW D L + W G TGFPI+DAAMRQ Sbjct: 1 EVAWREFYKHVLAHWPYVCMSKPFKYEYSDVEWEYDDALFEKWTSGLTGFPIVDAAMRQC 60 Query: 344 NTIGWMHNRLRM 355 + WMHNRLRM Sbjct: 61 KEMSWMHNRLRM 72 >gi|21218741|ref|NP_624520.1| hypothetical protein SCO0184 [Streptomyces coelicolor A3(2)] gi|5748646|emb|CAB53151.1| conserved hypothetical protein SCJ1.33 [Streptomyces coelicolor A3(2)] Length = 604 Score = 42.9 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G L P +C R + + + S WRE+ L + Sbjct: 255 HSLLSSTLNLGPLDPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY---- 310 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ + + + Q+ GW H+ R++ Sbjct: 311 -FGEGYRRSNALGHTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSH 369 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D +F +D D N G Q+A + PY Sbjct: 370 ALQRGWDPAAVTNWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417 >gi|22298242|ref|NP_681489.1| hypothetical protein tlr0700 [Thermosynechococcus elongatus BP-1] gi|22294421|dbj|BAC08251.1| tlr0700 [Thermosynechococcus elongatus BP-1] Length = 147 Score = 42.9 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 8/146 (5%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL++G+L P++ + + + + S L WRE+ L + + Sbjct: 9 WHSLLSPYLNLGLLHPQEVIDAALGAYSEGQLPLNSVEGFIRQILGWREYMYGLYHYLGA 68 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F+ + + W+ + ++Q+ G+ H+ R++ + Sbjct: 69 DYCQQNFLQHHQPLPAFF-------WQSDRATMSCLRHVLKQIECTGYAHHIQRLMILAN 121 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385 + + E +F S +D D Sbjct: 122 FALITGLAPQEVENWFHSVFIDAYDW 147 >gi|254442469|ref|ZP_05055945.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae bacterium DG1235] gi|198256777|gb|EDY81085.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae bacterium DG1235] Length = 508 Score = 42.9 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 113/371 (30%), Gaps = 52/371 (14%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +++ + G+ + + +F S E + + Sbjct: 110 LGELKAACLSAGVPLEVVEDDSFYSSAEDFAA-----------------------HREGR 146 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 K+L+ + + + + RK + + L P + Sbjct: 147 KQLRMEYFYREMRKKHGVLMDADGKPTGGKWNFDASNRKPFGKGGPERLAPRLRFPPDEI 206 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + V +P + +P+ +AL L F + ++ + +D Sbjct: 207 SREVIQDVDTALTGHPGELSHFDWPVTPSDALRALESFIENELPLFGAYQDAMWSGEPYL 266 Query: 245 ----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 L+ +++ +L PR+ + + +S L WREF R + + Sbjct: 267 SHSLLASSINLKLLDPREVVDAAVAAYESGHAPIESVEGFVRQILGWREFVRGIYGAFMP 326 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + + E + W G T I + Q G+ H+ R++ Sbjct: 327 EYLERNALGAREPLPSFY-------W-DGETEMNCIREVVTQTMKYGYAHHIQRLMVTGL 378 Query: 361 LVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416 VD + E++++ +D +L + G Q+A S PY Sbjct: 379 YALLHGVDPKEVHEWYLAVYVDAVEWVELPNTLGMSQYADGGVMASKPYV---------- 428 Query: 417 RFDPQGTFIRH 427 G +I+ Sbjct: 429 ---ATGKYIKR 436 >gi|262195259|ref|YP_003266468.1| deoxyribodipyrimidine photolyase-related protein [Haliangium ochraceum DSM 14365] gi|262078606|gb|ACY14575.1| deoxyribodipyrimidine photolyase-related protein [Haliangium ochraceum DSM 14365] Length = 519 Score = 42.9 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 9/146 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L++G+++P + R D + S + WREF R + + Sbjct: 272 FHSVLSPLLNLGLITPDEVVERTLAHAEDHRVPLNSLEGFLRQIIGWREFVRGVYRGHSE 331 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 +++ W TG +D A+ ++ +GW H+ R++ Sbjct: 332 QQETANAWGHHRRMKPC--------WWDASTGLRPLDDAIAKVLRMGWAHHIERLMVLCN 383 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385 L+ ++ R ++F++ +D D Sbjct: 384 LMNLCEIEPRQVHDWFLAMFVDAADW 409 >gi|123968015|ref|YP_001008873.1| hypothetical protein A9601_04781 [Prochlorococcus marinus str. AS9601] gi|123198125|gb|ABM69766.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein [Prochlorococcus marinus str. AS9601] Length = 496 Score = 42.9 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P N+ + + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + +K + +++ QG TG +D ++ + G+ H+ R++ Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|113477369|ref|YP_723430.1| deoxyribodipyrimidine photolyase-like protein [Trichodesmium erythraeum IMS101] gi|110168417|gb|ABG52957.1| deoxyribodipyrimidine photolyase-related protein [Trichodesmium erythraeum IMS101] Length = 476 Score = 42.9 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 59/428 (13%), Positives = 118/428 (27%), Gaps = 58/428 (13%) Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99 V + + E + + +I L + + L KG Y + + + + + Sbjct: 26 VLVESKELCNRLNYHKFKLTYILTCLREYRDLLISKGKKVYYFELNQHLNFEDAIKKLVK 85 Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 + TKL + + + + L+ + K Sbjct: 86 EFSYTKLQFTSISDKPVRKLIGEIIHNLKLESQELQSPSFLTTNLDFQKYLEHSKQKYLM 145 Query: 160 PFRKALIQNLVQA---------------------------------DLRSLPVPAIRLTG 186 + + + +S + T Sbjct: 146 NSFYIWQRKRLNIFVDQNKPKFGKWSFDSENRKKLPKNVSLPSSIWEFKSNNYQNVAQTI 205 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 +N P + D + +Q L + Y + S LS Sbjct: 206 SELYTNNPGYLDLQKSWLPINHKQAKQKLQEFLETRFRLFGNYEDALTNRDNFVFHSVLS 265 Query: 247 PYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 P L+ G+L+P + E+ +L S + WRE+ + L F Sbjct: 266 PMLNNGLLTPSYVLQEVLNYVEKNNNLEDFYNSIEGFIRQIIGWREWMKLLYEFKYD--- 322 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + F K K P+ A+ +++ + W H+ R++ S + Sbjct: 323 -ENFRELNFFKAQEKLPDYFYDLKDLPENIPLT-LAIEKVSKLSWAHHIERLMILSNWMT 380 Query: 364 DLLVDWRIGEEYFMSQLLD-GDL--ASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFD 419 + + E+F+SQ +D + N G A G + PY Sbjct: 381 LNSYNPKECYEWFLSQFVDAYEWVMVPNVYGMGLFADGGFFATKPYI------------- 427 Query: 420 PQGTFIRH 427 G +I+ Sbjct: 428 SGGAYIKK 435 >gi|213650723|ref|ZP_03380776.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 158 Score = 42.5 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 IC+ FDDSV+L PG+++ +MYKV+TPF+ A ++ L + +P P IR++G ++ Sbjct: 9 ICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGALSIP 68 Query: 192 NIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250 P +YP QA D FP+ E + LR FC + Y +RD PA+ GTS+LS L+ Sbjct: 69 LTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLSASLA 128 Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 G LSPRQC +RL E L + Sbjct: 129 TGGLSPRQCLHRLLAEQPQALDGGPGSVW 157 >gi|313677215|ref|YP_004055211.1| deoxyribodipyrimidine photolyase-related protein [Marivirga tractuosa DSM 4126] gi|312943913|gb|ADR23103.1| deoxyribodipyrimidine photolyase-related protein [Marivirga tractuosa DSM 4126] Length = 511 Score = 42.5 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 88/298 (29%), Gaps = 14/298 (4%) Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE----KRLQHRVICKSFDDSVLLPPGSI 147 + L + C + ++ ++ + E + L K D +L G+ Sbjct: 111 QQLKNLCEEISISTNSVETEHFLTERDDIADFFKGKKQFLMENFYRKMRKDHDILMEGTE 170 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 + + + A V A+ D Sbjct: 171 PVGGKWNFDHDNRNKYKGEVPIPPAYSYKNDVKAVISDIEKAGIKTIGTVDAENFHWPID 230 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 Q A + R+ Y S++S L+ ++SP++ +++ E + Sbjct: 231 RKQALQFARYFCRELLPYFGTYQDAMHSEEQFLFHSRISFALNSKLISPKELVDKIIEAW 290 Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + K K + WRE+ R + F K+ Sbjct: 291 EENQDKIKIAQVEGYIRQVIGWREYMRGIYWAKMPGYAEMNFFEHDRKLPDFY------- 343 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 W G T ++ +++Q T + H+ R++ + D +++++ +D Sbjct: 344 W-TGKTKMKCMEKSIKQSLTEAYAHHIQRLMVTGNFALLNMTDPDEVDQWYLGIYIDA 400 >gi|156744167|ref|YP_001434296.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus castenholzii DSM 13941] gi|156235495|gb|ABU60278.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus castenholzii DSM 13941] Length = 508 Score = 42.5 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 18/191 (9%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSPYL+IG+L P Q ++E + +S + WRE+ Sbjct: 266 FHSMLSPYLNIGLLEPLQIVRTVEEAYRAGAAPIQSVEGFARQIIGWREYIYWQYWRLMP 325 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 T + W G T + + + G+ H+ R++ Sbjct: 326 GLRDANAWNATRPLPRFF-------W-SGDTDMRCLRHVIERAIATGYTHHIERLMIVCN 377 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGGWQWAASTGNDS-------VPYFRIFN 410 + ++F++ +D D N G A G + Y R + Sbjct: 378 FCLLAGIRPSEVNDWFLAHYVDAYDWVMQPNVIGMGLNADGGLTATKPYIASAAYIRKMS 437 Query: 411 PTIQGKRFDPQ 421 G R+DP+ Sbjct: 438 DYCDGCRYDPK 448 >gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365] gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365] Length = 496 Score = 42.5 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 115/429 (26%), Gaps = 45/429 (10%) Query: 11 LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ R R N AL A S A + + + S R F+ + Sbjct: 29 LYWMIAAR---RTRYNFALERALAWSRALGKPLVVLEALRCDYPWASERLHRFVVDGMSD 85 Query: 68 VQKSLSQKGIVFQYHQCSNFDD---------------SIEWLDSYCLQQRVTKLFYNRQY 112 + + + + + + + L + V + Sbjct: 86 QSAAFADTPVAYYPYLEPRPGAGRGLLAALAAHACVVVTDEFPCFFLPRMVAAAARSLDV 145 Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 ++ V + L RV + L + Sbjct: 146 QVQAVDGNGLYPLAATERVFTTAASFRRHLQKELPAHLGDMPMAEPLAHAPPRDAAHALP 205 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P L P + + G + A L +F + + Y+E Sbjct: 206 AAIRKRWPPASLGRPGASDALLSALRFDRAVEAAPVRGGARAAGETLERFVRAGLPRYLE 265 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-------- 284 R+ PA TSQLSPYL G +S + + R+ + A Sbjct: 266 ARNQPADPVTSQLSPYLHFGHISAHEVFRRVMARDQWTPDRMAPRATGSREGFWGASSEV 325 Query: 285 -------LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYT 331 + WRE ++ A + W + ++Q T Sbjct: 326 EGFLDELITWREIGYNMAAKRDDYDRYESLPAWAQTTLEEHTGDPRPHLYELDEFEQART 385 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASN 388 + +AA QL G +HN +RM+ +++ LDG ++ Sbjct: 386 HDALWNAAQTQLVREGRIHNYMRMLWGKKILEWTRTPRDALAVMIELNNRYALDGRNPNS 445 Query: 389 NGGWQWAAS 397 G W Sbjct: 446 YSGIFWCLG 454 >gi|74196361|dbj|BAE33071.1| unnamed protein product [Mus musculus] gi|74212831|dbj|BAE33376.1| unnamed protein product [Mus musculus] Length = 1154 Score = 42.5 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%) Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + + + Q + A+ P + Sbjct: 275 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCG 334 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267 + + + + + + + +P G P RQ + Sbjct: 335 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 390 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326 + + ++ + + + + W Sbjct: 391 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 450 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + + Q + L + ++F D Sbjct: 451 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 510 Query: 387 SNNGGW 392 S GW Sbjct: 511 SEECGW 516 >gi|152967026|ref|YP_001362810.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus radiotolerans SRS30216] gi|151361543|gb|ABS04546.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus radiotolerans SRS30216] Length = 510 Score = 42.5 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 6/150 (4%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LS ++G+L P + R +E ++ S + WR + HL Sbjct: 262 DPWMAHSLLSAPQNLGLLDPLEIARRAEEHGRAHGVRLASVEGFVRQVVGWRSYTWHLYW 321 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + I A + + Q+ GW H+ R++ Sbjct: 322 HLGEGYKQRNALGSERTIPDWFGDLDADA-----VEANCLRHVLGQVRDEGWTHHIPRLM 376 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 ++F +D D Sbjct: 377 VLGNWGLQRGYRPAELADWFWRNFVDGYDW 406 >gi|289774147|ref|ZP_06533525.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289704346|gb|EFD71775.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 503 Score = 42.5 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 9/155 (5%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P +C R + + + S WRE+ L + G+ + Sbjct: 273 DPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY-----FGEGYRRSNALG 327 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + + Q+ GW H+ R++ D + Sbjct: 328 HTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTD 387 Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 +F +D D + G Q+A + PY Sbjct: 388 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 422 >gi|149927057|ref|ZP_01915315.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105] gi|149824278|gb|EDM83498.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105] Length = 513 Score = 42.5 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 51/409 (12%), Positives = 107/409 (26%), Gaps = 59/409 (14%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD--DSIEWLDSYCLQQRVTKLFYNRQYEI 114 + +++ + L + G Y + + + + C Q T + E Sbjct: 50 RVALFLSAMRHFAEELRKAGYTVHYRSLRDTGQNNLTTEVANLCKQHGYTSIDMAEPGEW 109 Query: 115 N---------------------EVRRDKLLEKRLQHRVICKSFDDSVLLPPG-------S 146 E + + Sbjct: 110 RLEQEFLKFAKSENLKLRLLEDTHYLCSRSEFAKWASGYKQMRMEYFYREMRKRTGVLME 169 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 + A + R A + +T V F D+P + Sbjct: 170 GVEPAGGKWNFDADNRSAFPKAGPGDITPPAFFEPDEITQAVFAEVEENFPDHPGTLKNF 229 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL----SPYLSIGVLSPRQCWNR 262 +P+ AL L F + + + +D S +++ +L P + + Sbjct: 230 AWPVTRTQALQALDNFIENRFANFGTYQDAMWTNTPFGWHSLVSSSINLHLLHPLEVIQK 289 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + + + S L WREF R + ++ + Sbjct: 290 AEAAYRAGKVDVASAEGFIRQILGWREFMRGVYWLDMPKMREDNYLQAKLDLPKWF---- 345 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 W G T + ++ Q G+ H+ R++ + + E++F++ +D Sbjct: 346 ---W-TGNTHMNCLKDSIGQTLDYGYAHHIQRLMVIGNFALLAGLVPQQVEDWFLAVYVD 401 Query: 383 G-DLA--SNNGGWQWAASTG-NDSVPYFRIFNPTIQGKRFDPQGTFIRH 427 + N G A+ G S PY G +I+ Sbjct: 402 AVEWVELPNVAGMALFANGGRFTSKPYI-------------ASGAYIKR 437 >gi|254525656|ref|ZP_05137708.1| photolyase protein family protein [Prochlorococcus marinus str. MIT 9202] gi|221537080|gb|EEE39533.1| photolyase protein family protein [Prochlorococcus marinus str. MIT 9202] Length = 496 Score = 42.5 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P N+ + + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + +K + +++ QG TG +D ++ + G+ H+ R++ Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|260220873|emb|CBA28875.1| hypothetical protein Csp_A09320 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 525 Score = 42.5 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 89/302 (29%), Gaps = 17/302 (5%) Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 + +R + Q RV + DS P G N + K + I Sbjct: 153 ETRQMFKPGKRWLMETMYRQMRVRHRVLLDSDGEPEGGQWNFDAENRKAWKGDPVEPIDF 212 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 D L +P + + + A + + Sbjct: 213 RPSHDHGLLWKEIQAAEVKTFGLPGANAIRWPLDRDEALHQLEAFIAHALPHFGDYQDAM 272 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 +R S LS L+ +LSPR+ R++ + + + L WR Sbjct: 273 SREAKR-----LFHSMLSFALNTKMLSPREVVGRVESAWRSGGVPLPAAEGFIRQILGWR 327 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 E+ R + F+ + + W G T + AA+ Q + Sbjct: 328 EYVRGVYWAQMPGYESNNFLEHSADLPEWF-------W-TGKTHMACMSAAITQSLEMAH 379 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP 404 H+ R++ ++ +++ +D +L + G Q+A G + P Sbjct: 380 AHHIQRLMVIGNFALLAGLNPTALHAWYLGIYIDAFEWVELPNTVGMSQFADGGGLATKP 439 Query: 405 YF 406 Y Sbjct: 440 YV 441 >gi|157412840|ref|YP_001483706.1| hypothetical protein P9215_05041 [Prochlorococcus marinus str. MIT 9215] gi|157387415|gb|ABV50120.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein [Prochlorococcus marinus str. MIT 9215] Length = 496 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P N+ + + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + +K + +++ QG TG +D ++ + G+ H+ R++ Sbjct: 322 KMRNSNFWNFEDKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|260827350|ref|XP_002608628.1| hypothetical protein BRAFLDRAFT_96165 [Branchiostoma floridae] gi|229293979|gb|EEN64638.1| hypothetical protein BRAFLDRAFT_96165 [Branchiostoma floridae] Length = 799 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 37/162 (22%), Gaps = 21/162 (12%) Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339 + R + F + E A T +I+ Sbjct: 24 CQKDNCTGRCGSWKNTHTCQCDVSCRTFSDCCDDYEDVCRHQESAARTNVTTVERVINTY 83 Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE---------YFMSQLLDGDLA---- 386 Q + + + D+ +E + QL++G+ Sbjct: 84 SCQWRCNDDVPAHGALCFCNASCLDMANCCEDYQEVCVKRDPDVWTGRQLMEGEPLQCIA 143 Query: 387 --------SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420 +N W A+ + R+ + DP Sbjct: 144 IEPPNMYNIHNYYWMVASCPTSFPRNKVRMLCEEKRSFDEDP 185 >gi|297472778|ref|XP_002686160.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Bos taurus] gi|296489487|gb|DAA31600.1| neurogenic locus notch homolog protein 2-like [Bos taurus] Length = 2479 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 16/242 (6%), Positives = 44/242 (18%), Gaps = 6/242 (2%) Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + + Q + A+ P + + Sbjct: 1300 CRSTFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1359 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270 + + + + + SP G P++ + + Sbjct: 1360 RRGEQCVHTASGPRCFCP----NPQDCDSGCASSPCQHGGSCYPQRQPPYYSCQCAPPFR 1415 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + +C + + + W Sbjct: 1416 GSHCELYTAPTSTPPATCLSQYCADKARDGICDDVCNSHACQWDGGDCSLTMEDPWANCS 1475 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 + P + Q + + L + +++ D S Sbjct: 1476 SPLPCWEYINNQCDELCNTAECLFDNFECQKSSKTCKYDKYCADHYEDNHCDQGCNSEEC 1535 Query: 391 GW 392 GW Sbjct: 1536 GW 1537 >gi|256790272|ref|ZP_05528703.1| hypothetical protein SlivT_37818 [Streptomyces lividans TK24] Length = 498 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 9/155 (5%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P +C R + + + S WRE+ L + G+ + Sbjct: 268 DPVECVERAERAWREGRAPLNSVEGFVRQIAGWREYVWQLYWY-----FGEGYRRSNALG 322 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + + Q+ GW H+ R++ D + Sbjct: 323 HTAPLPDWWNRLDADAVRANCLRTVLAQVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTD 382 Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 +F +D D + G Q+A + PY Sbjct: 383 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417 >gi|317969878|ref|ZP_07971268.1| deoxyribodipyrimidine photolyase-like protein protein [Synechococcus sp. CB0205] Length = 507 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 56/437 (12%), Positives = 126/437 (28%), Gaps = 53/437 (12%) Query: 22 DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 D AL +A D +V+ + + Q ++ +++++ L +G Y Sbjct: 15 DQSALASA-RPEDCRVLLL--ESSSVLEQRAYHGQKVVLVWSAMRHFAADLRDQGWTVDY 71 Query: 82 HQCSNFDDSI------EWLDSYCLQQRVTKLFYN----------RQYEINEVRRDKLLEK 125 Q F ++ + + L + V + F + + Sbjct: 72 IQTETFSSALLAWIQEQGIQELRLMEPVDRGFRRSIERLSLPIPIHLMQSNAFLWSREDF 131 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + + ++ + Q + + L PA Sbjct: 132 AAWAGRYKQLRMELFYREGRKRFGVLMETADSPLGGQWNYDQENRKPPTKGLSGPAPLWF 191 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR----------- 234 P + Q + + + R + + ++ + R Sbjct: 192 EPDAVTRAVIEKIEGLQQRHGLPGETQPFRWAVNRDQALQVLDHFTQTRLSGFGPFQDAM 251 Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + LSPYL++G+L P + RL+ E ++ + L WRE+ Sbjct: 252 VSGEPTLWHALLSPYLNLGLLHPLEVIQRLEREGLERQVPLAGLEGVIRQILGWREYTHG 311 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L ++ +E + + + G +G +D ++ + G+ H+ Sbjct: 312 LYHWFGEQYAEVNHFGASEPLPQWFE-------QLGGSGMRCLDTVFAEIESSGYAHHIQ 364 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLAS--NNGGWQWAASTGNDSVPYFRIFN 410 R++ + +D + +F +D D N G D Sbjct: 365 RLMLLANYGLLAGLDPQALTAWFHRMFIDGFDWVMLTNVLG----MGVFADGGRLA---- 416 Query: 411 PTIQGKRFDPQGTFIRH 427 K + G +I+ Sbjct: 417 ----SKPYAASGNYIKR 429 >gi|298713638|emb|CBJ33686.1| n/a [Ectocarpus siliculosus] Length = 1023 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 23/286 (8%), Positives = 51/286 (17%), Gaps = 20/286 (6%) Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162 V +Y Y + +S+ P +A + Sbjct: 720 VCWWYYAGPYVCRWYYAGPYVCWWHYTGPYRRSWWRPWYADPYDDRRNAGPYVCWWYYAG 779 Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRK 221 + + A ++ Y + + G + Sbjct: 780 PYVCRWNYAGPYVCRWNYADPYDDRRNAGPYVCWWYYAGPYVCRWYYAGPYVCRWYYAGP 839 Query: 222 FCKEKVYYYVEQRDI------PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275 + Y +R PY+ + Sbjct: 840 YVCWWHYTGPYRRSWWRPWYADPYDDRRDAGPYVCRWYYAGPYVCWWHYTGPYRRSWWRA 899 Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP--WTEKIEWNKDSHLLQAW------K 327 A + + + P VC P +AW Sbjct: 900 WYADPYDDRRNAGPYVCWWYYAGPYVCRWNYAGPYVCRWNYAGPYRWSWWRAWYAGPYVC 959 Query: 328 QGYTGFPIIDAA-----MRQLNTIGWMHNRLRMITASFLVKDLLVD 368 + P + + ++ W+ R + Sbjct: 960 RWNYAGPCWRSGRSRSLVHEVEAYPWLEGRWETTYNLQWMFLAKCK 1005 Score = 37.1 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 19/284 (6%), Positives = 49/284 (17%), Gaps = 3/284 (1%) Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 R Y R ++ + Sbjct: 494 RHCCARNYACARHYPDTHSRHCFARNYACARHYPDTHDRHCFARNYACARHYPDTHDRHC 553 Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218 A ++ R ++ F + +P Sbjct: 554 FARNYACARHYPDTHDRHCFARNYACARHYPDTHDRHCFARNYAC-ARHYPDTHDRHCFA 612 Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278 C ++ ++ P R + Sbjct: 613 RNYACARHYPDTHDRHCFARNYAGARHYPDAYDDHTFARNYAGPYVCRWNYAGPYVCWWY 672 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338 ++ W ++ ++ + + + ++ + Y P + Sbjct: 673 YAGPYVCRWYYAGPYVCWWHYTGPCRRSWWRPWYADPYDDRRNAGPYVCWWYYAGPYVCR 732 Query: 339 AMRQLNTIGWMHNRLRMITASF--LVKDLLVDWRIGEEYFMSQL 380 + W H + + D D R Y Sbjct: 733 WYYAGPYVCWWHYTGPYRRSWWRPWYADPYDDRRNAGPYVCWWY 776 >gi|194665363|ref|XP_872335.3| PREDICTED: neurogenic locus notch homolog protein 2-like [Bos taurus] Length = 2479 Score = 42.1 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 16/242 (6%), Positives = 44/242 (18%), Gaps = 6/242 (2%) Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + + Q + A+ P + + Sbjct: 1300 CRSTFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1359 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270 + + + + + SP G P++ + + Sbjct: 1360 RRGEQCVHTASGPRCFCP----NPQDCDSGCASSPCQHGGSCYPQRQPPYYSCQCAPPFR 1415 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + +C + + + W Sbjct: 1416 GSHCELYTAPTSTPPATCLSQYCADKARDGICDDVCNSHACQWDGGDCSLTMEDPWANCS 1475 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 + P + Q + + L + +++ D S Sbjct: 1476 SPLPCWEYINNQCDELCNTAECLFDNFECQKSSKTCKYDKYCADHYEDNHCDQGCNSEEC 1535 Query: 391 GW 392 GW Sbjct: 1536 GW 1537 >gi|78778808|ref|YP_396920.1| hypothetical protein PMT9312_0423 [Prochlorococcus marinus str. MIT 9312] gi|78712307|gb|ABB49484.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 496 Score = 42.1 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P + N+ + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEGFIRQIIGWREFICLVYKKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F ++ + +++ +G TG +D ++ + G+ H+ R++ Sbjct: 322 KMRNSNF-------WNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPNQVYKWFMGMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|320008018|gb|ADW02868.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces flavogriseus ATCC 33331] Length = 503 Score = 42.1 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 9/155 (5%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P +C R + + + S WREF H+ ++ + + E + Sbjct: 276 DPAECVERAEARWRSGDVPLNSAEGFVRQIAGWREFVWHVYWYFGTRYRESNALRHHEPL 335 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 A T + + Q+ T GW H+ R++ L D R + Sbjct: 336 PAWFTELSSDA-----TDANCLSHVLDQVRTTGWTHHIPRLMVLGSLSLQRGWDPRAVTD 390 Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 +F +D D + G Q+A + PY Sbjct: 391 WFHRSFVDGYDWVMVPNVVGMSQYADGGRMTTKPY 425 >gi|194210914|ref|XP_001497254.2| PREDICTED: Notch homolog 2 (Drosophila) [Equus caballus] Length = 2469 Score = 42.1 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 19/242 (7%), Positives = 47/242 (19%), Gaps = 6/242 (2%) Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + I Q + A+ P + + Sbjct: 1291 CHRAFTGRHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1350 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270 + + + + + + + +P G P++ + + Sbjct: 1351 RRGEQCVHTASGPRCFCP----NPQDCESSCASNPCQHGGSCYPQRQPPYYSCQCSPPFW 1406 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + + VC + + + W Sbjct: 1407 GSRCELYTAPTSTPPDTCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1466 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 + P D Q + + L + ++F D S Sbjct: 1467 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1526 Query: 391 GW 392 GW Sbjct: 1527 GW 1528 >gi|220913287|ref|YP_002488596.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter chlorophenolicus A6] gi|219860165|gb|ACL40507.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter chlorophenolicus A6] Length = 537 Score = 42.1 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 16/197 (8%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295 L+P L+IG+L PR+ + + + P + ++ +LI WRE+ R Sbjct: 287 HPFINHGLLTPALNIGLLDPREVLDSVLD--GAGQDTPLASLEGFVRQLIGWREYMRATY 344 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + ++ W TG +D + ++ G+ H+ R+ Sbjct: 345 RLRGRQMRSSNLLNHGNRLGTG--------WWDAATGLAPVDMVISRVLATGYSHHIERL 396 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYFRIFNP 411 + + L + E+FM+ +D D N Q+A+ G + PY N Sbjct: 397 MILGNAMSLLRIHPHDVYEWFMAMYVDAYDWVMVPNVYAMSQFASGAGITTKPYVSGSNY 456 Query: 412 TIQGKRFDPQGTFIRHW 428 + P G +I W Sbjct: 457 LRKMSDL-PPGEWIADW 472 >gi|109014712|ref|XP_001114248.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Macaca mulatta] Length = 2471 Score = 42.1 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 46/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + + SP G P++ + + + + Sbjct: 1359 HTASGPRCFCP----NPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFWGSRCELY 1414 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1475 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529 >gi|298208128|ref|YP_003716307.1| deoxyribodipyrimidine photolyase related protein [Croceibacter atlanticus HTCC2559] gi|83848049|gb|EAP85919.1| deoxyribodipyrimidine photolyase related protein [Croceibacter atlanticus HTCC2559] Length = 511 Score = 42.1 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 95/339 (28%), Gaps = 20/339 (5%) Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120 + +L Q+ + + + D ++ Q K + NE++ Sbjct: 82 LTENLQQLINKEEFENLEYLLPDEYRLDKQLKTFCESLSIQWAVKDTEHFYTTRNELQSF 141 Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 +K++ + + N + RKA + ++ Sbjct: 142 YKGKKQIVMEYFYRDMRKKHSILMQDSKNPEGGSWNFDKKNRKAWKGSPAIPKAKTFSKD 201 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 A L + NI F ++ + + + Y Sbjct: 202 ASALINLLDSFNIDYFGAIDSKSFNWPTNRQESLKVLEYFCENLLIHFGDYQDAMHPNEF 261 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMA 296 S+LS L+ +LSP++ N + + + + + L WREF R + Sbjct: 262 YLFHSRLSFALNTKMLSPKEVINTVLDYYYEHKEQIDISQVEGFVRQILGWREFMRGMYW 321 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 K + T + W G T + +++Q + H+ R++ Sbjct: 322 KEMPGYENKNSLENTNALPEFY-------W-TGNTKMSCLKHSIKQSLDHAYAHHIQRLM 373 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 + +++ +D QW Sbjct: 374 ITGNYALLTQTHPDDVDNWYLGVYIDA--------IQWV 404 >gi|297539300|ref|YP_003675069.1| deoxyribodipyrimidine photolyase-like protein [Methylotenera sp. 301] gi|297258647|gb|ADI30492.1| deoxyribodipyrimidine photolyase-related protein [Methylotenera sp. 301] Length = 519 Score = 42.1 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 113/368 (30%), Gaps = 47/368 (12%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 D I + V + + + + K+ ++ K LL G Sbjct: 115 DLIALCKEMNAELVVRDDTHFMCSKADFIHWAKVNKQLRMEFFYRKMRQKYDLLMQGDEP 174 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + RK ++ Q + V LT V + F ++P + ++ Sbjct: 175 V--GGAWNYDAENRKTFGKSGPQNVPAAPQVSIDGLTQTVIDTVETYFPNHPGSLKNFIW 232 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL---------SIGVLSPRQC 259 P+ AL L F K K+ + + +D S SPYL ++ +L+PR+ Sbjct: 233 PVTRAAALQFLEDFIKNKLAGFGDHQDAMWQSANSSQSPYLWHSLLSTSLNLKLLNPREV 292 Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318 + + S L WREF R + P + + W Sbjct: 293 IAAAVAAYHQQQLPLASVEGFIRQILGWREFIRGVYWLDMPKMGEANHYKHTCTLPSWYW 352 Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 G T + + G+ H+ R++ ++ R E ++++ Sbjct: 353 ---------TGDTHMNCMKQTINDTMQHGYAHHIQRLMVTGMFGILAELNPREVEAWYLA 403 Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH------- 427 +D +L + G +A S PY G +I+ Sbjct: 404 VYVDAVEWVELPNVAGMALYANGGRFTSKPYI-------------ASGAYIKRMSNYCSH 450 Query: 428 --WLPELN 433 + PEL Sbjct: 451 CKYKPELK 458 >gi|297663883|ref|XP_002810392.1| PREDICTED: LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 2-like, partial [Pongo abelii] Length = 2183 Score = 42.1 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + I Q + A+ P + + + + Sbjct: 1011 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1070 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1071 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1126 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1127 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1186 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1187 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1241 >gi|126695785|ref|YP_001090671.1| hypothetical protein P9301_04471 [Prochlorococcus marinus str. MIT 9301] gi|126542828|gb|ABO17070.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein [Prochlorococcus marinus str. MIT 9301] Length = 496 Score = 42.1 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 11/170 (6%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP L+ G+L+P N+ + + S + WREF + Y + Sbjct: 262 WHSLLSPLLNSGLLTPDVVVNKALLFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGT 321 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F + EK + +++ QG TG +D ++ + G+ H+ R++ Sbjct: 322 KMRNSNFWNFEEKP-------IPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGN 374 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + + ++FM +D D N G Q++ + PY Sbjct: 375 FMLLCRIHPNQVYKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYI 424 >gi|330814352|ref|YP_004358591.1| protein-like deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] gi|327487447|gb|AEA81852.1| protein-like deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp. IMCC9063] Length = 469 Score = 42.1 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 11/154 (7%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S LSP +++G+++P + I S + WREF R + Y Sbjct: 235 FHSMLSPIINLGLITPATLIRETLDFAKANKIPLNSLEGYVRQIIGWREFMRGIYQNYEK 294 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F L ++W G TG +D A++ G+ H+ R++ Sbjct: 295 RLLNTNFFNHQR--------KLSKSWYDGTTGIVPLDHAIKNCLQFGYTHHIERLMVVCN 346 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASNNGG 391 L+ + ++FM +D D A N G Sbjct: 347 LMNLSGIQPVQVYKWFMEMYVDSSDWVMAPNVMG 380 >gi|148654197|ref|YP_001274402.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp. RS-1] gi|148566307|gb|ABQ88452.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus sp. RS-1] Length = 508 Score = 41.7 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 50/396 (12%), Positives = 104/396 (26%), Gaps = 44/396 (11%) Query: 23 NKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 + A+ AA + + V + + + Q ++ I +++ +L ++G + Sbjct: 19 HPAIEAAESRSGRRNIRIVLVESDARIAQLPYQRKKIVLILSAMRHYAAALRERGYLVDE 78 Query: 82 HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141 + +F E L + Q R +L E R L + + L Sbjct: 79 VRAPSF---AEGLQHHVAQHRSQRLVTMAAAEYETRRFQHETLHALLGIPVDVLPNTQFL 135 Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLV---------------------QADLRSLPVP 180 + +V ++ + L P Sbjct: 136 VGQYDPFPAIEPSQRVIMERFYRAMRRRFAVLIEPDGSPTGGEWNFDRQNRRPLPRTVAP 195 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI---------LRKFCKEKVYYYV 231 +T D + G A+ Y Sbjct: 196 PPPITFEPDAITRQVMTDVDARGSGVGTATGFALAVTHAQAEAALNDFITNRLAAFGPYE 255 Query: 232 EQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + S LSPY++IG+L P Q +E + +S + WRE+ Sbjct: 256 DAMSATHDVVFHSMLSPYVNIGLLEPLQMVRAAEEAYRTGAAPIQSVEGFVRQVIGWREY 315 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 + W G T + +++ G+ H Sbjct: 316 IYWQYWRLMPALRDANAWNAMRPLPRFF-------W-NGETDMRCLRHVIKRAIATGYTH 367 Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 + R++ + ++F++ +D D Sbjct: 368 HIERLMVVCNFCLLAGIRPSEVNDWFLAHYIDAYDW 403 >gi|73981154|ref|XP_858190.1| PREDICTED: similar to notch 2 preproprotein isoform 2 [Canis familiaris] Length = 2381 Score = 41.7 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + I Q + A+ P + + + + Sbjct: 1209 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGAKCQSSCGQVKCRRGEQCV 1268 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + + SP G P++ + + + Sbjct: 1269 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1324 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1325 MAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1384 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1385 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1439 >gi|238918286|ref|YP_002931800.1| hypothetical protein NT01EI_0323 [Edwardsiella ictaluri 93-146] gi|238867854|gb|ACR67565.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 383 Score = 41.7 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 14/254 (5%), Positives = 40/254 (15%) Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + L + H + + Q ++ Sbjct: 99 QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 158 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + C + Sbjct: 159 QCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 218 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + Q + L QCW+ + + + + Sbjct: 219 QCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNA 278 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + ++ + Q K Q Sbjct: 279 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNA 338 Query: 354 RMITASFLVKDLLV 367 + +K++L Sbjct: 339 QCWHCQQRLKNVLC 352 Score = 40.6 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 18/265 (6%), Positives = 42/265 (15%), Gaps = 8/265 (3%) Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + L + H + + Q ++ Sbjct: 75 QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 134 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + C + Sbjct: 135 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNA 194 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNEL 285 + Q + L QCW + WL Sbjct: 195 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNA 254 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345 + L C + + + +Q R N Sbjct: 255 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNA 314 Query: 346 IGWMHNRLRMITASFLVKDLLVDWR 370 W + + + L + + Sbjct: 315 QCWHCQQRLKNAQCWHCQQWLKNAQ 339 Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 16/282 (5%), Positives = 46/282 (16%), Gaps = 12/282 (4%) Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + L + H + + Q ++ Sbjct: 27 QCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQRWHCQQRLKNAQCWHCQQWLKNA 86 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 ++ + + C + Sbjct: 87 QCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNA 146 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 + Q + L QCW+ + + + ++ Sbjct: 147 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLK------NAQCWHCQ 200 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + ++ + + Q W + + W+ N Sbjct: 201 QWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCW-----HCQQWLKNAQCWHCQQWLKN-A 254 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 + +K+ N W Sbjct: 255 QCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQ 296 Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 17/314 (5%), Positives = 45/314 (14%), Gaps = 16/314 (5%) Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------------DSVL 141 C Q ++ Q + + + + Sbjct: 19 CQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQRWHCQQRLKNAQCWH 78 Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201 + + Q ++ ++ + Sbjct: 79 CQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWH 138 Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261 + C + Q + L QCW+ Sbjct: 139 CQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNAQCWH 198 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 + + + + + ++ + H Sbjct: 199 CQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWH 258 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 Q K Q + +K+ Sbjct: 259 CQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWH 318 Query: 382 DGDLASNNGGWQWA 395 N W Sbjct: 319 CQQRLKNAQCWHCQ 332 >gi|73981152|ref|XP_540266.2| PREDICTED: similar to notch 2 preproprotein isoform 1 [Canis familiaris] Length = 2471 Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + I Q + A+ P + + + + Sbjct: 1299 RHCETFIDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGAKCQSSCGQVKCRRGEQCV 1358 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + + SP G P++ + + + Sbjct: 1359 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1414 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1415 MAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1475 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529 >gi|134288853|ref|NP_035058.2| neurogenic locus notch homolog protein 2 [Mus musculus] gi|148707003|gb|EDL38950.1| Notch gene homolog 2 (Drosophila), isoform CRA_a [Mus musculus] gi|225000670|gb|AAI72642.1| Notch gene homolog 2 (Drosophila) [synthetic construct] Length = 2473 Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%) Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + + + Q + A+ P + Sbjct: 1288 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCG 1347 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267 + + + + + + + +P G P RQ + Sbjct: 1348 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 1403 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326 + + ++ + + + + W Sbjct: 1404 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + + Q + L + ++F D Sbjct: 1464 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 1523 Query: 387 SNNGGW 392 S GW Sbjct: 1524 SEECGW 1529 >gi|110668351|ref|YP_658162.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum walsbyi DSM 16790] gi|109626098|emb|CAJ52549.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum walsbyi DSM 16790] Length = 522 Score = 41.7 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 39/373 (10%), Positives = 90/373 (24%), Gaps = 45/373 (12%) Query: 47 QWRQHGISARQ------SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW------- 93 H + R+ +++ + + L G Y + F D++ Sbjct: 46 LIEAHDFARRKSYHHDKLAIMFSGMRHFRDELEDAGYDVVYLKAPTFSDALAEYFERYPD 105 Query: 94 ----------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 D + + Sbjct: 106 DELIQMRSPSYNSAMRFDELVEDVGGQYRSVENELFVGTTTAFDEWANNSDTDPFRHETF 165 Query: 138 DSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 + +L + + + + + P T S + Sbjct: 166 YRWMRGKSGVLMNDGDPVGGEWNYDDENRDFPPDDWESPPVYDPEHDELTTETMSWVEST 225 Query: 197 FDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252 FD ++P+ + A H + + Y R + L +++G Sbjct: 226 FDTWGDTDSLIWPVTREQALEKLHHFISERIPSFGPYQDAMRREDWAMSHALLGSSINLG 285 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVC-MGKPFIPW 310 +L P + ++ + + P + + L WREF RH+ Sbjct: 286 LLHPVEVIQEIETAYHNRDDIPLNSVEGVIRQMLGWREFMRHVYRHTMPELGSANQLDAQ 345 Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 + A + + + G+ H+ R++ + D Sbjct: 346 HDLPSAYWSGETNMA---------CLGETVDDVKQRGYSHHIQRLMVLANFATLWGADPS 396 Query: 371 IGEEYFMSQLLDG 383 E+F + +D Sbjct: 397 ELNEWFNATYVDA 409 >gi|257897710|ref|ZP_05677363.1| von Willebrand factor type A domain-containing protein [Enterococcus faecium Com15] gi|257835622|gb|EEV60696.1| von Willebrand factor type A domain-containing protein [Enterococcus faecium Com15] Length = 1104 Score = 41.7 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 19/126 (15%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391 +P A Q + N + ++ + G Y L+D D A Sbjct: 252 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYAIGGAN 311 Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435 W+ +AA G+ + N Q + D G +I+ W+ P L+N Sbjct: 312 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 369 Query: 436 PTQYIH 441 PT +H Sbjct: 370 PTSDLH 375 >gi|285026357|dbj|BAI67897.1| liver stage-specific antigen-1 [Plasmodium vivax] Length = 2149 Score = 41.7 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 23/295 (7%), Positives = 60/295 (20%), Gaps = 27/295 (9%) Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++ L +K ++ R DK Sbjct: 1872 NLADYKEWLGKKEYPLI-------KKIVDIWSKIVN--------CRVMIWYKYFRGDKEE 1916 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + D + K + + + + + + Sbjct: 1917 QGMPINPEWQNWMQDLKNEWSRYNAYIHKERNKWFQKKEEEFHKFIEDFQFKWMHYNKEL 1976 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L + I + G + + + + + Sbjct: 1977 LEDHSFDVYKKSLKWQDSKWIKWIEKDG-------ESIMMMDMEKWIDKVKSEYDLWLLK 2029 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + + ++ L E+ D +S + +E Sbjct: 2030 DWEQWKTNKIMD-----WLLSEKKCDQYQYWLKWEYSNEKTSLRKERIDWYKWKKIRQSE 2084 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K + W + + W I +M W+ + + A Sbjct: 2085 AKEWQKWVREKDQALLEVKNAIWLNWKEDKKNIFFSMLHHFINNWIAKKQWNVWA 2139 >gi|227553400|ref|ZP_03983449.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] gi|227177451|gb|EEI58423.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis HH22] Length = 178 Score = 41.7 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 1/163 (0%) Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTP 160 +++N +RD+ + + I L I + Y+V+TP Sbjct: 7 DWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTP 66 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 + + + + + + P + + + + +GE+ A L Sbjct: 67 YYNKWKEAPKETPIPVSYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLN 126 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 F +K+ Y +RD P TS LS +L G LS R W L Sbjct: 127 TFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQEL 169 >gi|294495341|ref|YP_003541834.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus mahii DSM 5219] gi|292666340|gb|ADE36189.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus mahii DSM 5219] Length = 450 Score = 41.7 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 20/315 (6%) Query: 72 LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131 L + F D+ +++ S N E K E L+ Sbjct: 49 LKEYLGKLNIDCKIVFVDNKQFIWSIPEFNTWASSRKNLIMEDFYRTGRKNSEILLEKDG 108 Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191 ++ + + Q S + V S Sbjct: 109 KPSGGKWNLDRENRKLPPKNGF------------QKKPPQHIKFSPDKITKEIIAEVERS 156 Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251 P + + ++ + + Y + S LSPYL++ Sbjct: 157 EYPTYGKGKDFNLAVTHEDAQKALDFFIEEKLSNFGPYQDIMLTGDNVLWHSILSPYLNL 216 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G+L P + + + + S L WRE+ + + + + Sbjct: 217 GLLHPLNVIKKAELAYYQKNLPLNSIEGFIRQILGWREYMHCIYKYTGDKYLKSNWFDHE 276 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 ++ W T + + + ++ G+ H+ R++ S V+ Sbjct: 277 RELPDIY-------WYPERTSMNCMASVIEEVLNTGYAHHIQRLMILSNFALLAEVNPAK 329 Query: 372 GEEYFMSQLLD-GDL 385 + +F + +D D Sbjct: 330 VKNWFHAAFIDAYDW 344 >gi|182435389|ref|YP_001823108.1| hypothetical protein SGR_1596 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463905|dbj|BAG18425.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 505 Score = 41.7 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C R ++ + S WRE+ L + Sbjct: 262 HSLLSVPLNLGLLDPAECVERAEQAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 321 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + A + A + Q+ GW H+ R++ Sbjct: 322 YRTRNALRHRAPLPGWFLDLDADA-----VTANCLSAVLAQVRDTGWTHHIPRLMVLGSR 376 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 377 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 424 >gi|89890452|ref|ZP_01201962.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria bacterium BBFL7] gi|89517367|gb|EAS20024.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria bacterium BBFL7] Length = 513 Score = 41.7 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 34/351 (9%), Positives = 93/351 (26%), Gaps = 14/351 (3%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + + + + ++ I + + + L +C + Y+ ++ + + + Sbjct: 83 VENLNQIIKEQKIEKFEYLAPDEYRLDQQLKEFCKSLNIEWQGYDTEHFFTKRKDVEKFF 142 Query: 125 KRLQHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + + + D L + R R Sbjct: 143 EGKKRMTMEYFYRDMRKKHQILIDDDLEPEGGKWNYDHSNRNQWKGETDIPHERGFRKDV 202 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 + + +++ + G + E Y Sbjct: 203 TSIVKLLHKADVKTMGRIDEHNFNWPTTRQDGLDVLNYFCENLLIEFGTYQDAMHTDQHY 262 Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299 S+LS ++ +LSPR+ + + F + + I + Sbjct: 263 LYHSRLSFAMNCKLLSPREVIDAVLVRFRESGKPTIDISQVE--GFIRQILGWREFMRGI 320 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 + + N+ G T + A+ + H+ R++ Sbjct: 321 YWKEMPDYQSQNQLANRNQLPEFYW---TGKTKMNCLSNAINNSLDNAYAHHIQRLMVTG 377 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 + + +E+++ +D ++ + G QWA + PY Sbjct: 378 NYALLTMTEPSYVDEWYLGIYIDAIEWVEITNTRGMSQWADGGIVATKPYV 428 >gi|332237858|ref|XP_003268123.1| PREDICTED: neurogenic locus notch homolog protein 2 [Nomascus leucogenys] Length = 2431 Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1259 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCKKGEQCV 1318 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1319 HTASGPRCFCP----SPQDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1374 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1375 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1434 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1435 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1489 >gi|299067789|emb|CBJ38999.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 92 Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53 R DLR D+ AL+ A + +V F+ E+ + Sbjct: 26 FRRDLRHIDHAALHYALRHC-REVRCAFLFERERLDPLPV 64 >gi|108799890|ref|YP_640087.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. MCS] gi|119869000|ref|YP_938952.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. KMS] gi|108770309|gb|ABG09031.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. MCS] gi|119695089|gb|ABL92162.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. KMS] Length = 525 Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 10/319 (3%) Query: 70 KSLSQKGIVFQYHQCSNF--DDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L + G H+ ++F + + L T F + + + ++ + Sbjct: 107 DALERYGRPVLVHEPTSFAAERFVHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFR 166 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + D ++ + N + K V A + Sbjct: 167 MEDFYRDQRRRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEV 226 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQ 244 + + P + AL + Y + + S Sbjct: 227 RRDLDRMDLDTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSL 286 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L++GVL P ++ + D + L WRE+ HL G Sbjct: 287 LSVPLNLGVLHPLDAVYAAEQAYRDGTAPLAAVEGFIRQILGWREYMWHLYWH-----FG 341 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++ E + A+ L GW H+ R++ Sbjct: 342 ERYVDSNELDARTPLPDWWADLDADAVTAECLRHALMGLRDRGWTHHIQRLMILGSHALQ 401 Query: 365 LLVDWRIGEEYFMSQLLDG 383 R E++ + +DG Sbjct: 402 RGYHPRELTEWYATAYVDG 420 >gi|126435518|ref|YP_001071209.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. JLS] gi|126235318|gb|ABN98718.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. JLS] Length = 496 Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 10/319 (3%) Query: 70 KSLSQKGIVFQYHQCSNF--DDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDKLLEK 125 +L + G H+ ++F + + L T F + + + ++ + Sbjct: 78 DALERYGRPVLVHEPTSFAAERFVHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFR 137 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 + D ++ + N + K V A + Sbjct: 138 MEDFYRDQRRRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEV 197 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQ 244 + + P + AL + Y + + S Sbjct: 198 RRDLDRMDLDTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSL 257 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L++GVL P ++ + D + L WRE+ HL G Sbjct: 258 LSVPLNLGVLHPLDAVYAAEQAYRDGTAPLAAVEGFIRQILGWREYMWHLYWH-----FG 312 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + ++ E + A+ L GW H+ R++ Sbjct: 313 ERYVDSNELDARTPLPDWWADLDADAVTAECLRHALMGLRDRGWTHHIQRLMILGSHALQ 372 Query: 365 LLVDWRIGEEYFMSQLLDG 383 R E++ + +DG Sbjct: 373 RGYHPRELTEWYATAYVDG 391 >gi|119094175|gb|ABL60997.1| hypothetical protein ALOHA_HF1025F10.09 [uncultured marine bacterium HF10_25F10] Length = 149 Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 23/100 (23%) Query: 11 LVWLRND-LRITDNKALYA----ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 LVWL LR+T + A A +FI ++ + ++ FIY +L Sbjct: 4 LVWLHEGALRLT-HPVFVAGGPDAAT--------IFIWDRDRLAASHVGIKRQLFIYETL 54 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105 ++ ++ I + + E L Q + Sbjct: 55 AEMSQA-RSLDI--------HEGRAEEVLPRLAAQAGACR 85 >gi|300778231|ref|ZP_07088089.1| photolyase [Chryseobacterium gleum ATCC 35910] gi|300503741|gb|EFK34881.1| photolyase [Chryseobacterium gleum ATCC 35910] Length = 492 Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 46/376 (12%), Positives = 109/376 (28%), Gaps = 45/376 (11%) Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118 H++ L + + +L + + D ++ + ++ Sbjct: 105 HWLEKRLKETKLNLEMPNSPLFINTQEDLKD-----------------YFEGKNLYHQTD 147 Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 K + + K + +A + Sbjct: 148 FYKQQRITRNILMKGGKPLGGKWTYDTENRKKYPKNKKAPFIHFPKNNEYYQEAKAYTEK 207 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + P F Q ++ + +++ + + Sbjct: 208 YFSTNYGTLTDEQLYPTTFKEAEQWLEQFLEMRFPEFGIYEDSIVEKEYFLHH------- 260 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP +++G+L+ + + I S L WREF R + + Sbjct: 261 ----SVLSPMMNVGLLTAEHVLEKAISFARENDIPVNSVEGFVRQILGWREFVRGVYLYQ 316 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K + W L +++ TG +D++++++ G+ H+ R++ Sbjct: 317 GVYQRNKNY--------WQHKQKLPESFYTAQTGIRPVDSSIQKILKTGYAHHIERLMIF 368 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGGWQWAASTGNDS-----VPYFRIFNPT 412 + L+ +D ++FM +D D + S+ +D PY + Sbjct: 369 ANLMNLCQIDPDEIYQWFMEMFIDAYDWVM-VPNV-YGMSSFSDGGKMSTKPYISGSHYI 426 Query: 413 IQGKRFDPQGTFIRHW 428 + + P G + W Sbjct: 427 KKMSDY-PDGEWAGQW 441 >gi|301786048|ref|XP_002928445.1| PREDICTED: neurogenic locus notch homolog protein 2-like, partial [Ailuropoda melanoleuca] Length = 2446 Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 19/242 (7%), Positives = 45/242 (18%), Gaps = 6/242 (2%) Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + + Q + A+ P + + Sbjct: 1267 CRNAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1326 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270 + + + + + + SP G P++ + + Sbjct: 1327 RRGEQCVHTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFW 1382 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + VC + + + W Sbjct: 1383 GSHCELYMAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1442 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 + P D Q + + L + ++F D S Sbjct: 1443 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1502 Query: 391 GW 392 GW Sbjct: 1503 GW 1504 >gi|281341101|gb|EFB16685.1| hypothetical protein PANDA_018377 [Ailuropoda melanoleuca] Length = 2447 Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 19/242 (7%), Positives = 45/242 (18%), Gaps = 6/242 (2%) Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + + Q + A+ P + + Sbjct: 1268 CRNAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKC 1327 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDL 270 + + + + + + SP G P++ + + Sbjct: 1328 RRGEQCVHTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFW 1383 Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + VC + + + W Sbjct: 1384 GSHCELYMAPTSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCS 1443 Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390 + P D Q + + L + ++F D S Sbjct: 1444 SPLPCWDYINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEEC 1503 Query: 391 GW 392 GW Sbjct: 1504 GW 1505 >gi|323137270|ref|ZP_08072349.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp. ATCC 49242] gi|322397628|gb|EFY00151.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp. ATCC 49242] Length = 526 Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 95/360 (26%), Gaps = 41/360 (11%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113 + FI A++ + L +G+V Y + + D L + + ++ E Sbjct: 48 KIAFILAAMRHFAQELRAEGLVVDYVRLDDPENRGDFTGELARAVARHKPDRIVVTEPGE 107 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-------HALQMYKVYTPFRKALI 166 L V + D Y+ L+ Sbjct: 108 WRVREMMLGWAAMLGLPVEIRDDDRFFCSRADFSRWAGRRETLRMEFFYRDMRRRTGLLM 167 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF---------------QAIDPMFPIG 211 + R P R P R P + + P G Sbjct: 168 EGDAPVGGRWNFDPENRKPLPAKFRAPQRPRFAPDDTTREILKLTATRYAEHFGDLEPFG 227 Query: 212 EQNALHILRKFCKEKVYYY--------VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 R + + + + LSPYL++G+L+PR+ Sbjct: 228 WAVTRADARIALDDFIANCLPFFGDFQDAMKSGEPFLYHAILSPYLNVGLLTPREICVAA 287 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + ++ + L WRE+ R + + T + W Sbjct: 288 ERAYLSGAAPINAVEGFIRQILGWREYVRGIYWLRMPEYAETNALDATRPLPWFF----- 342 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 W G T + + + + H+ R++ V R EE+++ D Sbjct: 343 --W-SGETSMNCLGQVIDETRRHAYAHHIQRLMVVGNFALLAGVAPREIEEWYLVVYADA 399 >gi|326776029|ref|ZP_08235294.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf. griseus XylebKG-1] gi|326656362|gb|EGE41208.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf. griseus XylebKG-1] Length = 505 Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C R ++ + S WRE+ L + Sbjct: 262 HSLLSVPLNLGLLDPAECVERAEQAWRSGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 321 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + + A + A + Q+ GW H+ R++ Sbjct: 322 YRTRNALRHRAPLPGWFLDLDADA-----VTANCLSAVLAQVRDTGWTHHIPRLMVLGSR 376 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 377 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 424 >gi|291398125|ref|XP_002715436.1| PREDICTED: notch 2 [Oryctolagus cuniculus] Length = 2478 Score = 41.4 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1305 RHCETFVDVCPQMPCMNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRRGEQCV 1364 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + Sbjct: 1365 HTASGPRCFCP----NPQDCDAGCASSPCQHGGSCYPQRQPPYYSCHCAPPFWGSHCELY 1420 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 + + VC + + + W + P D Sbjct: 1421 SAPTSSPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMEDPWANCSSPLPCWD 1480 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1481 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1535 >gi|332809966|ref|XP_513697.3| PREDICTED: neurogenic locus notch homolog protein 2, partial [Pan troglodytes] Length = 2238 Score = 41.4 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1066 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1125 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1126 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1181 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1182 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1241 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1242 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1296 >gi|24041035|ref|NP_077719.2| neurogenic locus notch homolog protein 2 isoform 1 preproprotein [Homo sapiens] gi|143811429|sp|Q04721|NOTC2_HUMAN RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch 2; Short=hN2; Contains: RecName: Full=Notch 2 extracellular truncation; Contains: RecName: Full=Notch 2 intracellular domain; Flags: Precursor gi|55665317|emb|CAH72483.1| Notch homolog 2 (Drosophila) [Homo sapiens] gi|55665845|emb|CAH70182.1| Notch homolog 2 (Drosophila) [Homo sapiens] gi|56205498|emb|CAI18974.1| Notch homolog 2 (Drosophila) [Homo sapiens] Length = 2471 Score = 41.4 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1359 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1414 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1475 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529 >gi|11527997|gb|AAG37073.1|AF315356_1 NOTCH2 protein [Homo sapiens] Length = 2471 Score = 41.4 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1299 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1358 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1359 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1414 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1415 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1474 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1475 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1529 >gi|119577123|gb|EAW56719.1| Notch homolog 2 (Drosophila), isoform CRA_b [Homo sapiens] Length = 2220 Score = 41.4 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1048 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCV 1107 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + SP G P++ + + + + Sbjct: 1108 HTASGPRCFCP----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELY 1163 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1164 TAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 1223 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1224 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGW 1278 >gi|296123988|ref|YP_003631766.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces limnophilus DSM 3776] gi|296016328|gb|ADG69567.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces limnophilus DSM 3776] Length = 532 Score = 41.4 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 71/428 (16%), Positives = 134/428 (31%), Gaps = 59/428 (13%) Query: 44 TPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN--------------FDD 89 TPE+ Q + F ++++ + L K Y + + D Sbjct: 48 TPEEVEQIWCHRLRITFFFSAMRHFRDELRAKKFRVHYREMNQDPAKDEGQTFTDLLLRD 107 Query: 90 SIEW------------------LDSYCLQQRVTKLF---YNRQYEINEVRRDKLLEKRLQ 128 + E L++ + V + + + ++ +K+L Sbjct: 108 AHEVGIRELVVVEPGDWRVKQRLEAAAQKLGVPLTYLDDTHFFATHMDFQKFASGKKKLI 167 Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188 + + + R++ + L A +T V Sbjct: 168 LEYFYREMRKKHQILVDEAGQPEGGQWNFDHENRESFGSSGPGKLPAPLKFSADTITQEV 227 Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQ 244 T RF P + D + +AL +L+ F + + + D S+ Sbjct: 228 TDLVRARFPSNPGEVFDETLAVTRVDALKLLKHFVRHHLPRFGRYEDAMWTGEATLHHSR 287 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS YL++ +L+PR+C E + + S L WREF R + + Sbjct: 288 LSVYLNVKLLNPRECVQVAVEAYQAGHVDLASTEGFVRQILGWREFIRGIYWSHMPRYAE 347 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 F + + W G T + +M + G+ H+ R++ L + Sbjct: 348 LNFFEHQQPLPSFF-------W-DGQTEMVCVRESMSHVLKHGYAHHIHRLMVLGNLSQT 399 Query: 365 LLVDWRIGEEYFMSQLLDG-DLAS--NNGG-WQWAASTGNDSVPY-------FRIFNPTI 413 ++ M+ LD D S N G Q+ + PY R+ N Sbjct: 400 FGAHPYQFHQWHMAMYLDAIDWVSLPNTLGMSQFGDGGIVGTKPYCATGAYISRMSN-FC 458 Query: 414 QGKRFDPQ 421 Q +FDP+ Sbjct: 459 QSCQFDPK 466 >gi|311254470|ref|XP_003125864.1| PREDICTED: neurogenic locus notch homolog protein 2-like, partial [Sus scrofa] Length = 2368 Score = 41.0 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 45/235 (19%), Gaps = 6/235 (2%) Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + + Q + A+ P + + + + Sbjct: 1196 RHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCKKGEQCV 1255 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ--CWNRLKEEFVDLLIKPKSG 277 + + + + SP G P++ + + + Sbjct: 1256 HTASGPRCFCP----NPQDCESGCASSPCQHGGSCYPQRQPPYYSCQCSPPFWGSHCELY 1311 Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337 VC + + + W + P D Sbjct: 1312 TAPPSAPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCTSPLPCWD 1371 Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392 Q + + L + ++F D S GW Sbjct: 1372 YINNQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFRDNHCDQGCNSEECGW 1426 >gi|126727586|ref|ZP_01743419.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium HTCC2150] gi|126703176|gb|EBA02276.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium HTCC2150] Length = 511 Score = 41.0 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 93/363 (25%), Gaps = 42/363 (11%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYE 113 + FI++++ L+++G+ +Y + + D++ + + + ++ E Sbjct: 46 KIAFIFSAMRHFAAELAEQGLNLRYVRYDDPDNAGSLSGEVARAVGKHEIDEVIVTTPSE 105 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---- 169 + L V +S D + + F + + + Sbjct: 106 YRLSDDMSRWAQALNVHVSIRSDDRFLSSASDFAAWADGRKQLRMEFFYREMRRRYSILM 165 Query: 170 ---------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 D + P+ L P T P + L Sbjct: 166 DQDGPIGGQWNYDAENRKPPSNGLDVPTTYRAYPDAITQEVMDLVGTHFADHFGDLTPFH 225 Query: 221 K-----------------FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263 K Y S + YL+ G+L P +C R Sbjct: 226 FAVTRDQAIVAFEEFIARRLKMFGDYQDAMIQGEPWMFHSHIGLYLNCGLLEPLECIQRA 285 Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323 + + + + L WRE+ R + F + Sbjct: 286 EAAYHNGTAPLNAVEGFIRQILGWREYVRGIYWLKMPDYKTVNFFDAQRSLPEFY----- 340 Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD- 382 W T + + + + H+ R++ +D ++M D Sbjct: 341 --W-TADTQMNCMRQCITETKQNAYAHHIQRLMVLGNFALIAGLDPDEVNNWYMLVYADA 397 Query: 383 GDL 385 + Sbjct: 398 YEW 400 >gi|126313624|ref|XP_001367754.1| PREDICTED: similar to notch 2 preproprotein [Monodelphis domestica] Length = 2527 Score = 41.0 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 41/248 (16%), Gaps = 3/248 (1%) Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 L + T + L + P+ F Sbjct: 1337 QLINNYSCVCRSTFTGRHCETFLDVCPQMPCLNGGVCAVASNMPNGFICHCPPGFSGARC 1396 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKE 265 G + R G + P G SP ++ Sbjct: 1397 QSTCGHMKCKKGEQCVHTTLGPRCFCPRPEDCETGCAS-GPCRHGGSCSPQKEPPYYACR 1455 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQ 324 + RH + + + Sbjct: 1456 CPPSFWGSHCEFSSGPTLGPPPTCLSRHCADKARDGVCDEDCNSHACHWDGGDCSLTMED 1515 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384 W + P D Q + + L + ++F D Sbjct: 1516 PWANCSSPLPCWDRINHQCDELCNTAECLFDNFECQGNSKTCKYDKYCADHFNDNHCDQG 1575 Query: 385 LASNNGGW 392 S W Sbjct: 1576 CNSEECAW 1583 >gi|256372763|ref|YP_003110587.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009347|gb|ACU54914.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium ferrooxidans DSM 10331] Length = 502 Score = 41.0 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 48/372 (12%), Positives = 96/372 (25%), Gaps = 37/372 (9%) Query: 38 IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97 + +F+ + + ++ H I A + + L +G + F E L ++ Sbjct: 31 VVLFVVSRAKLAARPWHRQRLHAILAGMARFAAELRAEGFRVDEREADTF---TEGLAAH 87 Query: 98 CLQQRVTKLFYNRQYEIN-----EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 R + +L+ L + + Sbjct: 88 RASYRPETVRMMAPESFAGEALARRLGVELVASNLFLTTREEFGEWIAQTLERGRRPRME 147 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 + Y+ L+ A R RL P P P +D Sbjct: 148 EFYRWQRRRLGILMDEDGPAGGRWNFDSENRLPPPRAPVAWPTVIVDQLDQLDVRIVASL 207 Query: 213 QNALHILRKFCKEKVYYYVEQR-----------------DIPAIQGTS----QLSPYLSI 251 + R D LS L++ Sbjct: 208 PDQAVGDPPQGWWPTNRVGALRRLRAFIDEGLSRFGPYEDAMLADEPRLAHSMLSVALNL 267 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G+L P + ++ F D + S + WRE+ R + + + Sbjct: 268 GLLHPHEVVEAVERAFRDGRVGLSSAEGFLRQVIGWREYVRGFYWWQGPTYRSQNALGAE 327 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371 + A G T + + + GW+H+ R++ + L V Sbjct: 328 RPLPP--------ALATGRTRMRCVRTTLEGVERHGWVHHIQRLMVLANLGTLTGVQPAA 379 Query: 372 GEEYFMSQLLDG 383 ++ + +DG Sbjct: 380 MLDWMWERFVDG 391 >gi|124267244|ref|YP_001021248.1| putative alpha-deoxyribodipyrimidine photolyase-like protein [Methylibium petroleiphilum PM1] gi|124260019|gb|ABM95013.1| putative alpha-deoxyribodipyrimidine photolyase-related protein [Methylibium petroleiphilum PM1] Length = 510 Score = 41.0 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 20/176 (11%) Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 PR+ + + L WRE+ R + P ++ Sbjct: 281 PREVVDAAVAAYRGGAAPLAGVEGFVRQILGWREYVRGIYWTRM---------PGYAELN 331 Query: 316 WNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 L AW G T + A+ Q G+ H+ R++ L V + Sbjct: 332 ALDAREDLPAWYWTGDTEMACLRDAITQTLQHGYAHHIQRLMVTGLYALMLGVQPQQVHA 391 Query: 375 YFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420 ++++ +D +L + G Q+A S P Y + +P QG R+DP Sbjct: 392 WYLAVYVDAVEWVELPNTLGMSQYADGGLMGSKPYVATGKYIQRMSPHCQGCRYDP 447 >gi|260823635|ref|XP_002606186.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae] gi|229291525|gb|EEN62196.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae] Length = 560 Score = 41.0 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 40/238 (16%), Gaps = 7/238 (2%) Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 R + + + + + + P+ ++ Sbjct: 311 HGPAHTRAHHCLRNNEQRSTERYHHYPWSWCNTRSDDHGCTRYHHYPWSWCNTRSDDHGC 370 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVE 232 R P R+ YP+ + G H C + Y Sbjct: 371 TRYHHYPWSWCYTWSNDHGCTRYHHYPWSWCNTRSDDHGCARYHHYPWNRCYTWSHNYSC 430 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 R W+ + Sbjct: 431 NRYYHYPWSWCNTRSDHHGCTRYHHYPWSWCYTWSHHYGCTRYHHYPWSWCNTRSHDHGC 490 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 YP T + + W + YT T W + Sbjct: 491 TRYHHYPWS------RCNTRSHDHGCTRYHNYPWNRCYTWSHHYGCTRNNDYTWSWCN 542 >gi|284989242|ref|YP_003407796.1| deoxyribodipyrimidine photolyase-like protein [Geodermatophilus obscurus DSM 43160] gi|284062487|gb|ADB73425.1| deoxyribodipyrimidine photolyase-related protein [Geodermatophilus obscurus DSM 43160] Length = 528 Score = 40.6 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S LSP +++G+L P + + ++ + D + + + + + + ++ Sbjct: 277 WMTHSLLSPAVNLGLLDPIEEVHAAEQRYRDSVAEGDPLPLNSVEGFVRQVMGWRDYIWH 336 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 G+ F L G + + L GW+H+ R++ Sbjct: 337 TYWHFGRDFRHANALAAHEAVPDWLADLDDGAVDAACMSDVLGDLRRDGWVHHIPRLMVL 396 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 +D ++F +D D Sbjct: 397 GNYALQRGIDPLAMTDWFHRSFVDGYDW 424 >gi|150026081|ref|YP_001296907.1| hypothetical protein FP2042 [Flavobacterium psychrophilum JIP02/86] gi|149772622|emb|CAL44105.1| Protein of unknown function related to deoxyribodipyrimidine photolyase [Flavobacterium psychrophilum JIP02/86] Length = 520 Score = 40.6 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 39/342 (11%), Positives = 94/342 (27%), Gaps = 26/342 (7%) Query: 64 SLLQVQKSLSQKGIVFQY----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119 +L K+L Q Y +Q + E L ++C ++ + ++ ++ Sbjct: 88 NLQAFDKNLQQLINKEHYTHFEYQLPDEYRLDELLKNFCQTLSISTSVADSEHFMSTREE 147 Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179 + ++ + + + K L Sbjct: 148 LGNFFDGKKTFLMESFYHMMRKKHNVLMQGNKPLTGKWNYDGENRKKLPKNHKPTSPLGF 207 Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 A + ++P + +L F E + + +D Sbjct: 208 NNDVSEIVAEIHKSNIKTIGNIDAKNFVWPTTRTQSSKLLDFFVTECLTLFGSYQDAMTP 267 Query: 240 Q----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRH 293 S++S +++ ++SP + NR +E+ + + WRE+ R Sbjct: 268 NQWSLYHSRISFSMNVKLISPLEVINRAIQEWESRPDQIAYNQLEGFVRQIIGWREYMRG 327 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 + + K+ W G T + + Q + H+ Sbjct: 328 IYWNKMPQYATMNYFENQNKLPQWF-------W-TGKTKMNCLKDTINQSLNFAYAHHIQ 379 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 R++ V+ + +++ +D QW Sbjct: 380 RLMITGNFALLAGVNPDEVDAWYLGIYIDA--------IQWV 413 >gi|171057935|ref|YP_001790284.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] gi|170775380|gb|ACB33519.1| deoxyribodipyrimidine photolyase-related protein [Leptothrix cholodnii SP-6] Length = 513 Score = 40.6 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 53/422 (12%), Positives = 119/422 (28%), Gaps = 59/422 (13%) Query: 26 LYAACHNSDAKVIAVFIATPE---------QWRQHGISARQS-------HFIYASLLQVQ 69 A + + + + P Q + + + ++ V Sbjct: 61 FAQALRAAGRPLHPMRLDDPTNQGSLAAQLQADIERLRPARLVMTAPGDWRVLQAIKDVA 120 Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129 + G+ + + +F S+ ++ ++ ++ R + L Sbjct: 121 Q---AHGLPLEIREDRHFYGSVREFAAHARGRKSLRM-------EYFYREMRKRHGVLMQ 170 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + + A + + + D + V A+ Sbjct: 171 GEQPEGGQWNFDADNREAFGAAGPGSVPP--------RAVFEPDAMTREVIALVEARLAD 222 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249 F +P + + + + + E + LS L Sbjct: 223 HPGRLDDFAWPVSREQALVALQRFVTERLPLFGRYQDAMWPGE-----PWLHHAHLSAAL 277 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309 ++ +L+PR+ + + S L WRE+ R + P Sbjct: 278 NLKLLNPREVVDAAVAAYRAGAAPLASVEGFVRQILGWREYVRGIYWTRM---------P 328 Query: 310 WTEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 ++ L AW G T + A+ Q G+ H+ R++ V Sbjct: 329 GYAELNTLDAQEDLPAWYWTGATDMACLRDAIGQTLQHGYAHHIQRLMVTGLFALMYGVQ 388 Query: 369 WRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRF 418 + ++++ +D +L + G Q+A S P Y + +P +G R+ Sbjct: 389 PQQVHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYVATGKYIQRMSPYCKGCRY 448 Query: 419 DP 420 DP Sbjct: 449 DP 450 >gi|109112699|ref|XP_001117324.1| PREDICTED: endothelial cells scavenger receptor [Macaca mulatta] Length = 610 Score = 40.6 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 32/238 (13%), Gaps = 5/238 (2%) Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186 LQ + D +P + + P A S Sbjct: 39 LQCCAGWRQKDQECTIPICEGPDACQKDEVCVKPGLCRCKPGFFGAYCSSRCPGQYWGPD 98 Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 A C S Sbjct: 99 CRENCPCHPHGQCEPATGACQCQAHRWGAHCEFPCTCGPHGRCDPAT--GVCRCEPGWWS 156 Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306 P + + + G C Sbjct: 157 PTCHRPCQCKPEAARCEQATGACVCKPGWWGRRCSFRCTCHGSPCDQDSGRCA--CRPGW 214 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + P + A Q P A +L H + + Sbjct: 215 WGPECRQQCECVRGRCSAASGQCTCP-PGFRGARCELPCPAGSHGVQCAHSCGHCKHN 271 >gi|118375412|ref|XP_001020891.1| hypothetical protein TTHERM_00411970 [Tetrahymena thermophila] gi|89302658|gb|EAS00646.1| hypothetical protein TTHERM_00411970 [Tetrahymena thermophila SB210] Length = 1813 Score = 40.6 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 24/296 (8%), Positives = 51/296 (17%), Gaps = 7/296 (2%) Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALI 166 + + I ++ + T I Sbjct: 250 SQECRSCINNCQTCTKSDDCSNCQIGYGYNYQKQQCAQCYQGCSNCDQNLSCTECFSGYI 309 Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226 Q + I G T N I + + Sbjct: 310 QTTNPKNNSQQYCKMICSAGQFTFINWQTMAQQCNPCISNCTQCSQDKQCDTCTANYEYI 369 Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 + + + + Y +S Q + + + Sbjct: 370 QQVFQCKI-VCQQNQYRDTTFYNCTNCVSNCQKCVDGQSCSQCQSNYEYVSEVNSCLVIC 428 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346 YR+ Y I T + + Q + + +T Sbjct: 429 NNNQYRNPQNNYLCADCIDNCISCTNGQSCTTCTQDHEYVSQVNKCLHVCLQNQFRDSTQ 488 Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG-----WQWAAS 397 ++ S + ++ NN WQ Sbjct: 489 NYLCQNCHQSCQSCTGPAQSQCRSCYQGWYQLGSFCYQWCPNNYKEDSTLWQCVQC 544 >gi|302557423|ref|ZP_07309765.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] gi|302475041|gb|EFL38134.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000] Length = 498 Score = 40.6 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 9/155 (5%) Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 P +C ++ + S WRE+ L ++ + T + Sbjct: 268 DPAECVGEAEKAWRAGRAPLNSVEGFVRQIAGWREYVWQLYWYFGEDYRDSNALGHTAPL 327 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374 + A + + + Q+ GW H+ R++ D + Sbjct: 328 PDWWNDLDADAVRA-----NCLRTVLAQVRDTGWTHHIPRLMILGSHALQRGWDPAAVTD 382 Query: 375 YFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 +F +D D + G Q+A + PY Sbjct: 383 WFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417 >gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300075805|gb|ADJ65204.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 40.6 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 54/398 (13%), Positives = 114/398 (28%), Gaps = 30/398 (7%) Query: 26 LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY-------ASLLQVQKSLSQKGIV 78 L+ A KV+A+F A + + + +I SL+ +L++ Sbjct: 51 LHHA-----QKVLALFAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQA 105 Query: 79 FQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSF 136 Q Q + E L + Q + + ++ + + L + + Sbjct: 106 SQVQWQAPDEWRVDEALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYR 165 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 + + + A+ P Sbjct: 166 QMRRRFELLLEADGSPTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVP 225 Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE----QRDIPAIQGTSQLSPYLSIG 252 QA +P+ + AL L F + + + S LS L++ Sbjct: 226 TFGDPQASQLRWPLNREEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVK 285 Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312 +L P + R +E + + + + WRE+ R + + + Sbjct: 286 MLHPLEVVRRAEEAYREGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGL 345 Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 + W G T + A+ Q H+ R++ +D + Sbjct: 346 PLPAWF-------W-TGQTRMRCLQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKAL 397 Query: 373 EEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 ++++ +D +L + G QWA + PY Sbjct: 398 HQWYLGVYIDAFEWVELPNTLGMSQWADGGIIATKPYV 435 >gi|91217385|ref|ZP_01254345.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus torquis ATCC 700755] gi|91184493|gb|EAS70876.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus torquis ATCC 700755] Length = 523 Score = 40.6 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 94/322 (29%), Gaps = 15/322 (4%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L + C + ++ + ++ + + K + + + D +LN Sbjct: 124 LKTICNKLSISSQAKDSEHFFTKRDDVQNFYKGKKEMTMEYFYRDMRKKHEIMMLNDKKP 183 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGE 212 + + + + + + G + + +P Sbjct: 184 EGGQWNFDKSNRKKWTGKPPIPKFKGFDKNVEGVLKQIETMGIKTMGRIDQEKFPWPTSR 243 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + L +L FC + ++ + D S+LS ++ +LSPR+ + + Sbjct: 244 KECLEVLDYFCTHLLVHFGDYEDALHTDEKFLFHSRLSFSMNSKMLSPREVIETTLDYYY 303 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 D + + I + + E NK Sbjct: 304 DHKEEIDISQ---IEGFIRQILGWREFMRGVYWQEMPEYKSKNELQNTNKLPDFYW---T 357 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----D 384 G T + ++ Q + H+ R++ + D + +++ +D + Sbjct: 358 GDTKMNCLKHSVNQSLDDAYAHHIQRLMILGNFALLTMTDPDEVDAWYLGVYIDAIEWVE 417 Query: 385 LASNNGGWQWAASTGNDSVPYF 406 L + G Q+A + PY Sbjct: 418 LTNTRGMSQFADGGIVATKPYV 439 >gi|295837931|ref|ZP_06824864.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] gi|295826748|gb|EDY46118.2| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74] Length = 504 Score = 40.6 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C + + + S WRE+ L Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYREGEAPLNSVEGFVRQIAGWREYVWQLYWH---- 316 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ + + G + + Q+ GW H+ R++ Sbjct: 317 -FGEDYRSLNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 423 >gi|295135591|ref|YP_003586267.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia profunda SM-A87] gi|294983606|gb|ADF54071.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia profunda SM-A87] Length = 515 Score = 40.6 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 28/323 (8%), Positives = 86/323 (26%), Gaps = 11/323 (3%) Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY---NRQYEINEVRRDKL 122 +++ + + I +Q + + L C + Y + N++ + Sbjct: 88 ENLKQLIKKNDIEKFEYQLPDEYRLDQQLKEICKSLSIDSEAYDTEHFLTTRNDLEKFYD 147 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 +K++ + + + + + RK R Sbjct: 148 GKKQMTMEYFYRDMRKKYDIMMATKNDPEGGKWNFDKSNRKKWTGTPEIPHERGFRKDVS 207 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ--RDIPAIQ 240 L + + I + ++ + + ++ + + A Sbjct: 208 HLVKEIEQAGIKTMGNINEKSFNWPSSREDSLSVLNYFCKNLLVHFGDFQDALHTDHAYL 267 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S+LS ++ +LSP++ + + + K + + + Sbjct: 268 FHSRLSFCMNTKMLSPKEVIDSAISYYYEHKDKIDISQ---VEGFVRQILGWREYMRGIY 324 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + + N+ G T + A+ Q + H+ R++ Sbjct: 325 WLKMPGYRRRNKLDNQNELPPFYW---DGKTKMNCLHHAITQSLDNAYAHHIQRLMITGN 381 Query: 361 LVKDLLVDWRIGEEYFMSQLLDG 383 + +++ +D Sbjct: 382 YALLTQCHPDEVDAWYLGIYIDA 404 >gi|13242247|ref|NP_077334.1| neurogenic locus notch homolog protein 2 precursor [Rattus norvegicus] gi|20138817|sp|Q9QW30|NOTC2_RAT RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch 2; Contains: RecName: Full=Notch 2 extracellular truncation; Contains: RecName: Full=Notch 2 intracellular domain; Flags: Precursor gi|13162674|gb|AAK13558.1| NOTCH2 [Rattus norvegicus] Length = 2471 Score = 40.6 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 15/246 (6%), Positives = 44/246 (17%), Gaps = 6/246 (2%) Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + + Q + A+ P + Sbjct: 1288 YQCVCRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNVPDGFICRCPPGFSGARCQSSCG 1347 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267 + + + + + + +P G P RQ Sbjct: 1348 QVKCRRGEQCVHTASGPHCFCP----NHKDCESGCASNPCQHGGTCYPQRQPPYYSCRCS 1403 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326 + + ++ + + + + W Sbjct: 1404 PPFWGSHCESYTAPTSTPPATCLSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + + Q + + L + ++F D Sbjct: 1464 ANCTSSLRCWEYINNQCDELCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDKGCN 1523 Query: 387 SNNGGW 392 + GW Sbjct: 1524 NEECGW 1529 >gi|332141441|ref|YP_004427179.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551463|gb|AEA98181.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 512 Score = 40.6 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 31/365 (8%), Positives = 89/365 (24%), Gaps = 46/365 (12%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 + F+++++ L Y ++ + + L + +++ ++ Sbjct: 47 KIAFLFSAMRHFAAHLRDNNYQVNYVHYTDEGNQGDLLAQV--KHTLSRQHFDEVKVTVP 104 Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176 L + + S N + R ++ Sbjct: 105 GEYRLLKSMQQWQNQLGIPVTICEDNRFFSTPNEFSEWADGKKQLRMEFFYREMRRKHNV 164 Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236 L + G R Q + + + + K + + D Sbjct: 165 LMDGKNPIGGKWNYDAQNRESMPETQKVPKHTTFAIDDITSDVIELVKSEFSEHFGDIDN 224 Query: 237 PA-----------------------------------IQGTSQLSPYLSIGVLSPRQCWN 261 S ++ YL+ G+L+P++ Sbjct: 225 FHFAVTRKDALSVLNTFIEERLPNFGQYQDAMVEGKPWLYHSHIAFYLNCGLLTPKEAIQ 284 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 ++ + + S L WRE+ R + + + + Sbjct: 285 AAEQAYHAGQVPLNSAEGFIRQILGWREYVRGFYWHFMPNLKTDNYFDNSRALPSFF--- 341 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 W T + +++ + H+ R++ + + +++ Sbjct: 342 ----W-DAQTNMNCMRQCIKETQQNAYAHHIQRLMVIGNFSLLTELSPEEVQAWYLLVYA 396 Query: 382 D-GDL 385 D + Sbjct: 397 DAYEW 401 >gi|311978263|ref|YP_003987466.1| putative deoxyribodipyrimidine photolyase-related protein [Acanthamoeba polyphaga mimivirus] gi|311788811|gb|ADQ12922.1| putative deoxyribodipyrimidine photolyase-related protein [Acanthamoeba polyphaga mimivirus] Length = 393 Score = 40.6 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 77/276 (27%), Gaps = 19/276 (6%) Query: 74 QKGIVFQYHQCSNFDDSIEWLDSY-CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132 Y++ F L + Q +K N+++ + + + Sbjct: 117 SYNQKIIYYESPGF-----ILTNLDLKQYTGSKQGANKKFFQHSFYAWFRKKFDILMDGN 171 Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192 Y+ L + + A + + Sbjct: 172 KPIGGKYSYDKYNRQTIPNKNFYQFLDDNNINLETKKYVNEY---YLEAQKYCENTFENF 228 Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSI 251 P ++ + P+ + + Y + D S +SP L+ Sbjct: 229 YPNNYNPENIQLYPINHADIISHFDYFVENKLPYFGMYEDAIDFDDPYLFHSVISPQLNS 288 Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 G+++PR +++ +++ ++ +L+WRE+ R L + M F Sbjct: 289 GLITPRYVLDKVIDKYNKSNTDLLYEVEGYIRQLVWREYSRMLYRYIRKDMMKNYFGNKN 348 Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347 E W G TG +D A+ G Sbjct: 349 RISEI---------WYTGNTGIEPVDLAISSAFQYG 375 >gi|291448405|ref|ZP_06587795.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351352|gb|EFE78256.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 540 Score = 40.6 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L+P +C +R +E + S WRE+ L + Sbjct: 297 HSLLSVPLNLGLLAPAECVDRAEEAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 356 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + T + A + + Q+ GW H+ R++ Sbjct: 357 YRDRNALRHTALLPGWFLDLDADA-----VTAHCLSTVLAQVRDTGWTHHIPRLMVLGSR 411 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SN-NGGWQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 412 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 459 >gi|20138876|sp|O35516|NOTC2_MOUSE RecName: Full=Neurogenic locus notch homolog protein 2; Short=Notch 2; AltName: Full=Motch B; Contains: RecName: Full=Notch 2 extracellular truncation; Contains: RecName: Full=Notch 2 intracellular domain; Flags: Precursor gi|2373395|dbj|BAA22094.1| cell surface protein [Mus musculus] Length = 2470 Score = 40.2 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 16/246 (6%), Positives = 46/246 (18%), Gaps = 6/246 (2%) Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + + + Q + A+ P + Sbjct: 1286 YNCICRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNMPDGFICRCPPGFSGARLQSSCG 1345 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267 + + + + + + + +P G P RQ + Sbjct: 1346 QVKCRRGEQCIHTDSGPRCFCL----NPKDCESGCASNPCQHGGTCYPQRQPPHYSCRCP 1401 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326 + + ++ + + + + W Sbjct: 1402 PSFGGSHCELYTAPTSTPPATCQSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1461 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + + Q + L + ++F D Sbjct: 1462 ANCTSTLRCWEYINNQCDEQCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDQGCN 1521 Query: 387 SNNGGW 392 S GW Sbjct: 1522 SEECGW 1527 >gi|332993098|gb|AEF03153.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas sp. SN2] Length = 512 Score = 40.2 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 32/322 (9%), Positives = 83/322 (25%), Gaps = 31/322 (9%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 L +Q+ G+ + F S + + ++ ++ R + Sbjct: 110 LKSMQQWEQSLGVPVSIINDARFLASPKEFSDWAHDRKQLRM-------EFFYREMRRKH 162 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + + A+ Q+++ + + Sbjct: 163 GILMEDKSPIGGKWNYDAQNREPMPAGTNVPTHTQFKIDAITQDVIDLVEKEFSDHFGDI 222 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + I+ P Q ++ S Sbjct: 223 SPFHFAVTRDDALTVLSDFIEERLPHFGQYQDAMVEGKPWLYH---------------SH 267 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 ++ YL+ G+LSP++ + + + S L WREF R + Sbjct: 268 IAFYLNCGLLSPKEAIDAAESAYYAGTAPLNSVEGFIRQILGWREFVRGFYWHFMPSLKS 327 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + W G T + +++ + H+ R++ Sbjct: 328 DNYFNHNRSLPDFF-------W-NGQTNMNCMRQCIKETQANAYAHHIQRLMVLGNFCLL 379 Query: 365 LLVDWRIGEEYFMSQLLD-GDL 385 + +++++ D + Sbjct: 380 TGLSPEEVQQWYLLVYADAYEW 401 >gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Lai str. 56601] gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Lai str. 56601] gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 516 Score = 40.2 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 69/447 (15%), Positives = 132/447 (29%), Gaps = 55/447 (12%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70 L W+ R+ N +L + H S + I P + S R FI + K Sbjct: 26 LYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWSSLRLHKFILEGMSYNIK 85 Query: 71 SLSQKGIVFQYH---QCSNFDDSIE-----------------WLDSYCLQQRVTKLFYNR 110 + G+ ++ + +++ E + Q Sbjct: 86 EAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYPAYIIPELLEQVSKKIKCKFL 145 Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 + N + + + I + + + L +N Sbjct: 146 AVDSNSIIPLTFYGEFVSAARILRPRVHKLFPEVWKFRSFHKPNKPFREKGDSWLEKNPN 205 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 +++ ++ F++ P G + + +L+KF K + Y Sbjct: 206 SPLKKNIWFEG--DVDQISEICKKCNFNFQNIPPVPGKKGGREEGIKLLQKFLKRGLSGY 263 Query: 231 VEQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--- 284 E R P +S LSPY+ G +S + + + +D P N Sbjct: 264 AELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSEVLNWNLDGSWTPGVIIPENKNRKEG 323 Query: 285 ---------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHL 322 + WR+ + PS +P K + + Sbjct: 324 YFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYT 383 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQ 379 + + T I +AA ++L G M N LRM+ +++ + I EE+ Sbjct: 384 KEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKY 443 Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYF 406 DG ++ G W G P+F Sbjct: 444 AYDGRDPNSYNGILW--CFGLFDRPWF 468 >gi|333025959|ref|ZP_08454023.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071] gi|332745811|gb|EGJ76252.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071] Length = 504 Score = 40.2 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C + + + S WRE+ L Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYREGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ + + G + + Q+ GW H+ R++ Sbjct: 317 -FGEEYRELNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423 >gi|301612125|ref|XP_002935580.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like, partial [Xenopus (Silurana) tropicalis] Length = 1940 Score = 40.2 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 23/278 (8%), Positives = 47/278 (16%), Gaps = 6/278 (2%) Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 I Q + D + R + ++ E K E RL +C Sbjct: 1283 INLTLRQRNQIGDCLMLCCQNHPDVRTPVRTADDFKKVPEGGCTKKCEFRLDCGHVCTRV 1342 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 K+ + + + + P+ Sbjct: 1343 CHPYDPEHKEY-QCNKPCQKILCEEGHRCKKTCFKPCGPCM--ELVPKNMPLCGHVQMVP 1399 Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256 P + P + + + +D+ A + Sbjct: 1400 CSIPVRTFCCEIPCTKFLSCGHQCGKLCGEECEDHCIQDVEAELKCGHIQKIKCWKKRDI 1459 Query: 257 --RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314 K L K +C P T + Sbjct: 1460 EFGMPVQCRKPCHATLSCGHKCPGNCHSCTQGRFHVTCRHPCKRLLICSHPCQEPCTNEC 1519 Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + W Sbjct: 1520 PPCNRVCRNRC-IHSQCKKKCGERCTPCMEPCDWKCEH 1556 >gi|89094240|ref|ZP_01167182.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92] gi|89081495|gb|EAR60725.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92] Length = 513 Score = 40.2 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 18/302 (5%) Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP------PG 145 LD+ LQ + +L + + + + L+ + + L Sbjct: 110 RVLDTLSLQIKGRQLSLQVLPDNHFMTEPGEFQHWLKDKKQPRMEYWYRYLRKKHNILIN 169 Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205 + + R+ + + +T V D P Sbjct: 170 DFGKPEGEKWNFDASNRRPFGKKGPPTPGNHPDITPDNMTLEVIDEINTLIPDLPGSLNS 229 Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWN 261 +P+ + AL +L F +++ + + +D Q S LS L++ +L P + Sbjct: 230 FEWPVCRKQALSLLDSFISDRLPLFGDFQDAMWQQEPFLNHSWLSSSLNLKLLHPWEVIE 289 Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321 + + + + L WRE+ R L Y + + Sbjct: 290 AAIQAYKNGNAPLNAVEGFIRQILGWREYVRGLYWTYSQKWEQMNALEHHRDLPAFY--- 346 Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 W G T + ++ Q+ G+ H+ R++ D + +++ + Sbjct: 347 ----W-NGDTKMNCLRESISQVLEKGYGHHIQRLMVTGLFALLYGADPQQVHRWYLGMYV 401 Query: 382 DG 383 D Sbjct: 402 DA 403 >gi|156094272|ref|XP_001613173.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax SaI-1] gi|148802047|gb|EDL43446.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax] Length = 2662 Score = 40.2 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 23/295 (7%), Positives = 60/295 (20%), Gaps = 27/295 (9%) Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123 +L ++ L +K ++ R DK Sbjct: 2385 NLADYKEWLGKKEYPLI-------KKIVDIWSKIVN--------CRVMIWYKYFRGDKEE 2429 Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183 + + D + K + + + + + + Sbjct: 2430 QGMPINPEWQNWMQDLKNEWSRYNAYIHKERNKWFQKKEEEFHKFIEDFQFKWMHYNKEL 2489 Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243 L + I + G + + + + + Sbjct: 2490 LEDHSFDVYKKSLKWQDSKWIKWIEKDG-------ESIMMMDMEKWIDKVKSEYDLWLLK 2542 Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 + + ++ L E+ D +S + +E Sbjct: 2543 DWEQWKTNKIMD-----WLLSEKKCDQYQYWLKWEYSNEKTSLRKERIDWYKWKKIRQSE 2597 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 K + W + + W I +M W+ + + A Sbjct: 2598 AKEWQKWVREKDQALLEVKNAIWLNWKEDKKNIFFSMLHHFINNWIAKKQWNVWA 2652 >gi|283778295|ref|YP_003369050.1| deoxyribodipyrimidine photolyase-like protein [Pirellula staleyi DSM 6068] gi|283436748|gb|ADB15190.1| deoxyribodipyrimidine photolyase-related protein [Pirellula staleyi DSM 6068] Length = 541 Score = 39.8 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 27/192 (14%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYP 299 SQ+S +++ +L PR+ ++ + ++ S L WRE+ R + + P Sbjct: 288 FHSQISSAMNLKLLDPREVIEAAEQAYRRGDVELASAEGFIRQILGWREYVRGIYWLYMP 347 Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359 ++ + + Q G+ H+ R++ Sbjct: 348 EYLERNHLHATRTLPDFYWTGETPMR---------CLRETITQTLETGYAHHIQRLMVTG 398 Query: 360 FLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415 + + ++++ +D +L + G Q+A S PY Sbjct: 399 LFALLAGIRPQEVHAWYLAVYIDAIEWVELPNTLGMSQYADGGVMASKPYV--------- 449 Query: 416 KRFDPQGTFIRH 427 G +I+ Sbjct: 450 ----ATGKYIQR 457 >gi|330683894|gb|EGG95665.1| hypothetical protein SEVCU121_0018 [Staphylococcus epidermidis VCU121] Length = 49 Score = 39.8 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 435 VPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476 + +YIH P + DK + +YP IV+HK + + ++++ Sbjct: 1 MSRKYIHDPTKYKDKLQEIYHIEIGQDYPKTIVNHKNSRDYVMDKFKQ 48 >gi|322435348|ref|YP_004217560.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium sp. MP5ACTX9] gi|321163075|gb|ADW68780.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium sp. MP5ACTX9] Length = 565 Score = 39.8 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 53/398 (13%), Positives = 96/398 (24%), Gaps = 60/398 (15%) Query: 27 YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS--L--------SQKG 76 + A + V ++ +P+ +LL +Q+S L +++ Sbjct: 76 HFALEQAAKGVKVLYHFSPDSHG-------------QALLHLQQSNKLPAITCMTPAERE 122 Query: 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136 + HQ + + + + V K + Sbjct: 123 LRLDLHQAQQQG--------LDITFAEDTTWASSTKDFTTVYGPYKQGKSYVMDRFYRRM 174 Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196 + + Q + V P + + Sbjct: 175 RQQTGILMQNAKPIGGQFSFDADNRSPYKHEVPVPTPPTYPPDTITQEVIALVEQTYAHH 234 Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE-QRDIPAIQGTSQLSPYLSIGVLS 255 F P + + RD S+ S L++G L Sbjct: 235 FGTTEDFDLPCTQSDSDAFWQFFLTHQLPHFGRFEDAMRDDHLQLFHSKTSVLLNLGRLL 294 Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKI 314 + + S L WREF RHL + +P K+ Sbjct: 295 AMDLIRDVAARAAEGTAPMASCEGFIRQLLGWREFMRHLHEQTDGYRLLAGHVPQEPRKV 354 Query: 315 EWNKDSHLLQA-------WKQGYT-------------------GFPIIDAAMRQLNTIGW 348 A W QG T G +D ++Q+ GW Sbjct: 355 PHEFSPDAPGAPRLDSETWVQGATPSALGASLTLPAAYWGIESGLHCLDTVVKQVIHEGW 414 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 H+ R++ S L R ++F +D D Sbjct: 415 SHHITRLMVLSNLANLCGFSPRELTDWFWFAYVDAYDW 452 >gi|294339499|emb|CAZ87858.1| putative Deoxyribodipyrimidine photolyase-related protein [Thiomonas sp. 3As] Length = 519 Score = 39.8 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 34/319 (10%), Positives = 89/319 (27%), Gaps = 28/319 (8%) Query: 65 LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124 + ++ + + G+ + + +F S ++ ++ ++ R + Sbjct: 119 MQSIKAAAAALGVPLEVREDRHFYASPTDFAAHARGRKQLRM-------EFFYRAMRQRH 171 Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184 L + + + D + V A+ Sbjct: 172 DVLMEGDQPAGGQWNFDADNREAFPKSGPGHVPSPAQF--------APDAITREVIALVN 223 Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244 + + F +P + + + + + + E + Sbjct: 224 QRFASHPGMLADFAWPVTRSQALQALERFMRERLPQFGQWQDALWPNE-----PWLWHAH 278 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS L++ +L+PR+ + + S L WRE+ R + Sbjct: 279 LSAALNLKLLNPREVVEAAQTAWRQGQAPLHSAEGFIRQILGWREYVRGIYWTQMPGYAE 338 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + W G T + A+ Q G+ H+ R++ Sbjct: 339 RNALGVQAPLPAWF-------W-SGQTDMACLRDALAQTLRYGYAHHIQRLMVIGLYALL 390 Query: 365 LLVDWRIGEEYFMSQLLDG 383 V + ++F++ +D Sbjct: 391 HGVQPQQVHQWFLAVYVDA 409 >gi|239944944|ref|ZP_04696881.1| hypothetical protein SrosN15_28410 [Streptomyces roseosporus NRRL 15998] gi|239991408|ref|ZP_04712072.1| hypothetical protein SrosN1_29162 [Streptomyces roseosporus NRRL 11379] Length = 508 Score = 39.8 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L+P +C +R +E + S WRE+ L + Sbjct: 265 HSLLSVPLNLGLLAPAECVDRAEEAWRAGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEE 324 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 + + T + A + + Q+ GW H+ R++ Sbjct: 325 YRDRNALRHTALLPGWFLDLDADA-----VTAHCLSTVLAQVRDTGWTHHIPRLMVLGSR 379 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDL---ASNNGGWQWAASTGNDSVPY 405 D ++F +D D + G Q+A + PY Sbjct: 380 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 427 >gi|302520313|ref|ZP_07272655.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78] gi|302429208|gb|EFL01024.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78] Length = 504 Score = 39.8 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C + + + S WRE+ L Sbjct: 261 HSLLSAPLNLGLLDPAECAELAERAYSEGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ + + G + + Q+ GW H+ R++ Sbjct: 317 -FGEEYRGLNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423 >gi|318057368|ref|ZP_07976091.1| hypothetical protein SSA3_05476 [Streptomyces sp. SA3_actG] gi|318080957|ref|ZP_07988289.1| hypothetical protein SSA3_30741 [Streptomyces sp. SA3_actF] Length = 504 Score = 39.8 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS L++G+L P +C + + + S WRE+ L Sbjct: 261 HSLLSAPLNLGLLDPAECAELAEHAYREGEAPLNSVEGFVRQVAGWREYVWQLYWH---- 316 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G+ + + G + + Q+ GW H+ R++ Sbjct: 317 -FGEEYRELNALRHTAPLPEWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSR 375 Query: 362 VKDLLVDWRIGEEYFMSQLLD-GDLA--SNNGG-WQWAASTGNDSVPY 405 D ++F +D D N G Q+A + PY Sbjct: 376 ALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVLGMSQYADGGRMTTKPY 423 >gi|159901997|gb|ABX10727.1| deoxyribodipyrimidine photolyase-related protein [uncultured planctomycete 13FN] Length = 515 Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 15/285 (5%) Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 + +E K L + + + R++ ++ Sbjct: 134 HFYCSPDEFAEYADGRKSLLLEFFYRDLRKRHDILMADAKQPEGGQWNFDHDNRESFGRS 193 Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228 + +T V RF ++P P+ + A L+ F + + Sbjct: 194 GPGEISQPKSFRPDAVTKDVVDLVEHRFAEHPGNLNHFTLPVTRRQAKAFLKHFIESILP 253 Query: 229 YYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 + + D S+LS L++ +L PR+C + + + S Sbjct: 254 NFGKWEDAMWTGEAFLYHSRLSAPLNMKLLHPRECVDAAVQAYRTGKAPLNSVEGFVRQI 313 Query: 285 LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343 L WREF R + P F E + G T + +M+Q+ Sbjct: 314 LGWREFIRGIYWLKMPEYVELNHFDHQRELPSFFW---------DGDTEMSCVKQSMQQV 364 Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-DLAS 387 G+ H+ R++ + V R+ E+ M+ +D D S Sbjct: 365 IDHGYSHHIHRLMVLGNFAQLWGVHPRLFHEWHMAMYVDAIDWVS 409 >gi|325108590|ref|YP_004269658.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces brasiliensis DSM 5305] gi|324968858|gb|ADY59636.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces brasiliensis DSM 5305] Length = 519 Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 78/268 (29%), Gaps = 16/268 (5%) Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + L+ + D +H + + L + D + V A Sbjct: 156 YFYRWLRKKHNILIESDGSPTGGDWNYDHDNRESFNKSGPASGLKPRRFRPDETTQEVIA 215 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241 + + FD P + + E + E + E Sbjct: 216 LVESRFADHPGSLEHFDLPVTHTEARTKLREFIKHGLPNFGEFEDAMWTGET-----YLY 270 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPS 300 S LS L++ +L+PR+C E + + S L WREF R + P Sbjct: 271 HSHLSACLNLKLLNPRECIELAVEAYENGDAPLNSVEGFVRQILGWREFVRGIYWTHMPE 330 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 F E + D + +M + + H+ R++ Sbjct: 331 YAEKNYFDHDREVPSFFWDGETDMR---------CVRESMSHVVNHSYAHHIHRLMVLGN 381 Query: 361 LVKDLLVDWRIGEEYFMSQLLDG-DLAS 387 L + + V E+ M+ LD D S Sbjct: 382 LSQTVGVHPLKFHEWHMAMYLDAIDWVS 409 >gi|296135393|ref|YP_003642635.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas intermedia K12] gi|295795515|gb|ADG30305.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas intermedia K12] Length = 519 Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 18/327 (5%) Query: 67 QVQKSLSQKGIVF----QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122 + L + ++ + + V ++ Sbjct: 91 SLDAELQRAVQRLRPTQLVMTQPGDWRVLQSIKAAAAAHGVPLELREDRHFFASPSDFAT 150 Query: 123 LEKRLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 + + + + A + R+A ++ Sbjct: 151 HARGRKQLRMEFFYRAMRQRHDVLMEGDQPAGGQWNFDADNREAFPKSGHGHVPSPAQFA 210 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 +T V RF +P D +P+ AL L +F +E++ + + +D Sbjct: 211 PDAITREVISVVNQRFASHPGTLADFAWPVTRPQALQALERFMRERLPQFGQWQDALWPN 270 Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 + LS L++ +L+PR+ + + S L WRE+ R + Sbjct: 271 EPWLWHAHLSAALNLKLLNPREVVEAAQTAWRQGEAPLHSAEGFIRQILGWREYVRGIYW 330 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + W G T + A+ Q G+ H+ R++ Sbjct: 331 TQMPGYAERNALGAQAPLPAWF-------W-SGQTDMACLRDALAQTLRYGYAHHIQRLM 382 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG 383 V + ++F++ +D Sbjct: 383 VIGLYALLHGVQPQQVHQWFLAVYVDA 409 >gi|294085610|ref|YP_003552370.1| deoxyribodipyrimidine photolyase-like protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665185|gb|ADE40286.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 515 Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 40/364 (10%), Positives = 96/364 (26%), Gaps = 42/364 (11%) Query: 56 RQSHFIYASLLQVQKSLSQKGIVFQYHQCSN----------FDDSIEWLDSYCLQQRVTK 105 R+ F+++++ + L +KGI Y + +I L Sbjct: 50 RKVAFLFSAMRHFAEELRRKGITVHYVTLDDSKNTGSFTSEVGRAITLFAPDRLILTEPG 109 Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + R + + + + D+ + G Y+ L Sbjct: 110 EYRVRAAMDEWRQVLDVDVEIRDDDRFLCTHDEFSIWAEGRKQLRMDFFYRDMRRRFDIL 169 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 +Q + R + +T + P + + Sbjct: 170 MQGDTPIGDKWNYDADNRESPDLTQVVPAPYRCPPDDITKEVLTLVAARCADHFGSLEDF 229 Query: 226 KVYYYVEQ-----------------------RDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262 + + S + YL+ G+L+P + Sbjct: 230 DFAVTRKGALEVLAKFIDERLPLFGKFQDAMIEDEPWMYHSHIGFYLNAGLLTPLEVIKA 289 Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 +++E+ + + L WREF R + ++ + + Sbjct: 290 VEQEYHNGNAPLNAVEGFIRQILGWREFIRGIYWLKMPGYAALNYLEASRPLPALF---- 345 Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382 W G T + ++ Q + H+ R++ +D + E+++ D Sbjct: 346 ---W-TGDTRMNCMRQSISQTARYAYAHHIQRLMVLGNFALLTGLDPVMVNEWYLVVYAD 401 Query: 383 -GDL 385 + Sbjct: 402 AYEW 405 >gi|239994037|ref|ZP_04714561.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas macleodii ATCC 27126] Length = 512 Score = 39.4 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 9/274 (3%) Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172 + ++ + +L G Y Q + + Sbjct: 136 PQEFTDWAEGKKQLRMEFFYREMRRKHNVLMEGKNPIGGKWNYDAQNREAMPETQRVPKH 195 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + ++ V F D + + Y Sbjct: 196 STFEIDDITSKVIELVKSEFSDHFGDINNFHFAVTRKDALSVLNTFIEERLPNFGQYQDA 255 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 + S ++ YL+ G+L+P++ + ++ + + S L WRE+ R Sbjct: 256 MVEGKPWLYHSHIAFYLNCGLLTPKEAIHAAEQAYHAGQVPLNSAEGFIRQILGWREYVR 315 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + + W T + +++ + H+ Sbjct: 316 GFYWHFMPNLKTDNYFNNSRALPSFF-------W-DAQTNMNCMRQCIKETQQNAYAHHI 367 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 R++ + + +++ D + Sbjct: 368 QRLMVIGNFSLLTELSPEEVQAWYLLVYADAYEW 401 >gi|238024328|ref|YP_002908560.1| Deoxyribodipyrimidine photolyase-like protein [Burkholderia glumae BGR1] gi|237878993|gb|ACR31325.1| Deoxyribodipyrimidine photolyase-related protein [Burkholderia glumae BGR1] Length = 509 Score = 39.4 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 102/361 (28%), Gaps = 18/361 (4%) Query: 54 SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113 R I A+L + +SL + I + D + + + Sbjct: 75 DPRNRQAIPANLDLLAESLGARRIEYLLPDEWRLDQQLRAYAAASAIPVAAVDTGHFYTT 134 Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173 + +R + ++ + + A + R+A + Sbjct: 135 RDALREAMGAGRPWVMDRFYRAMRVRHRILLDADGAPAGGRWNYDADNRQAWSGQPPEPA 194 Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 L + + A D +P+ AL L +F ++ + ++ + Sbjct: 195 DWRPRHDHRELWARIEAAG--VHSFGKPSADDLRWPVDRDEALACLDRFIRDALPWFGQF 252 Query: 234 RDIPAIQGTSQLSPYLSI----GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 +D LS +L PR+ R + + + + L WRE Sbjct: 253 QDAMHTSAPRLFHSMLSFALNVKMLDPREVVARAEAAYRAGAVPLAAAEGFIRQILGWRE 312 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 F R + + W G T + A++Q Sbjct: 313 FVRGVYWARMPDYARSNGFGHRRALPDWF-------W-NGNTRMACMSHALQQSLDHAHA 364 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405 H+ R++ +D + +++ +D ++ + G Q+A + PY Sbjct: 365 HHIQRLMVIGNFALLAGLDPQAVHAWYLGVYIDAFEWVEMPNTLGMSQYADGGAMATKPY 424 Query: 406 F 406 Sbjct: 425 V 425 >gi|291239472|ref|XP_002739649.1| PREDICTED: Plasminogen-like [Saccoglossus kowalevskii] Length = 1326 Score = 39.4 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 21/249 (8%), Positives = 50/249 (20%), Gaps = 5/249 (2%) Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 + K +H + + + + D R I Sbjct: 936 MYKCSEHCGTDVPYCGADGYVGPKCTCVCHHGVGDDCHEPRQCYSSYNGEDYRGGVNVTI 995 Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG- 241 S+ + P +G+ N + + D Sbjct: 996 GGLECQMWSDQSPWLHTYVPENYPDAGVGDHNYCRNPDGDDQPWCITLDDDIDWQYCDIG 1055 Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S + + + + D + K E+ Sbjct: 1056 QSSDTCLYECYLKRDGTDYFGTVDITTDGTLCQKWSEQ----SPHTHEYSTSRYPKGGLG 1111 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 P + W S W+ G P + + T ++ + + Sbjct: 1112 DHRYCRNPDFDDAPWCFTSDPDIRWQYCDVGQPTENCGETECYTAVNGNDYRGSVHVTQS 1171 Query: 362 VKDLLVDWR 370 +++ Sbjct: 1172 LRECRRWTH 1180 >gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum] Length = 765 Score = 39.4 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 16/295 (5%), Positives = 56/295 (18%), Gaps = 7/295 (2%) Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 V + + ++ S + + N + ++ Sbjct: 264 YWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSF 323 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 + + + + R + ++ D Sbjct: 324 NFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNT 383 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + + + + R ++ K + + Sbjct: 384 GYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWR--FDFWKRYWFNSWYDWNWYWHW 441 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 + + + + + F N + WK+ ++ Sbjct: 442 NRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRY-----WFNSWY 496 Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 W R + + +++ + W W Sbjct: 497 DWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWV 551 Score = 37.5 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 15/257 (5%), Positives = 48/257 (18%), Gaps = 1/257 (0%) Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161 + + + + + + ++ + Sbjct: 464 KWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYN 523 Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221 + + + R N+ RF + + + Sbjct: 524 WNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHS 583 Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281 K Y + + + + + W + G SW Sbjct: 584 RYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNFNLWRFDFWKWYGFNSW 643 Query: 282 LNELIWREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 + +R + H + + ++ + W + I+ Sbjct: 644 YDWNWYRHWDRFHSRYNWKWYRFNTGHNWYRIYFDFWSFNFRKWYWFYSRYNWYRINFNF 703 Query: 341 RQLNTIGWMHNRLRMIT 357 + W Sbjct: 704 WSFDFRKWYWFYTWYNW 720 Score = 37.5 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 14/256 (5%), Positives = 53/256 (20%) Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 + +R + + + + + N + ++ Sbjct: 68 WINFNWNWYWFNSWLNWQRKRFYSWFDRSWKRFYTGYNWKWYWFYARYNWNGVNFDFWSF 127 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 + + + + R + ++ D Sbjct: 128 NFRKWYWFYSGYNWYWVNLNLWRFDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNT 187 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + V + + + + R + + + F Sbjct: 188 GYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWINFNFW 247 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340 N W FY ++ ++ + + D + + W + ++ + Sbjct: 248 SFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGF 307 Query: 341 RQLNTIGWMHNRLRMI 356 W++ Sbjct: 308 NTRYNWNWVNFDFWSF 323 >gi|149030534|gb|EDL85571.1| notch gene homolog 2 (Drosophila), isoform CRA_a [Rattus norvegicus] Length = 2471 Score = 39.4 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 15/246 (6%), Positives = 44/246 (17%), Gaps = 6/246 (2%) Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + + Q + A+ P + Sbjct: 1288 YQCVCRSAFTGRHCETFLDVCPQKPCLNGGTCAVASNVPDGFICRCPPGFSGARCQSSCG 1347 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEF 267 + + + + + + +P G P RQ Sbjct: 1348 QVKCRRGEQCVHTASGPHCFCL----NRKDCESGCASNPCQHGGTCYPQRQPPYYSCRCS 1403 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNKDSHLLQAW 326 + + ++ + + + + W Sbjct: 1404 PPFWGSHCESYTAPTSTPPATCLSQYCADKARDGICDEACNSHACQWDGGDCSLTMEDPW 1463 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 + + Q + + L + ++F D Sbjct: 1464 ANCTSSLRCWEYINNQCDELCNTAECLFDNFECQRNSKTCKYDKYCADHFKDNHCDKGCN 1523 Query: 387 SNNGGW 392 + GW Sbjct: 1524 NEECGW 1529 >gi|238059205|ref|ZP_04603914.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149] gi|237881016|gb|EEP69844.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149] Length = 523 Score = 39.4 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 26/208 (12%) Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301 S LS ++G+L P + + + + L WREF L + Sbjct: 280 HSVLSSSFNLGLLDPAEAIRAAEGAWRKGAASLSAVEPFVQGLLGWREFLWQLYWYLEPG 339 Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361 G ++ E + A + + + W+H+ R++ Sbjct: 340 HRGANWLAANEPLPDWFAGLDADA-----VEARCLADVLAGVRDRAWVHHAQRLLVLGNY 394 Query: 362 VKDLLVDWRIGEEYFMSQLLDG-DLASN---NGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 +F +DG D A N G Q+A D+ PY Sbjct: 395 ALQRGWRPAELAGWFRDCFVDGTDWAMNATVIGMSQYADLGRVDTRPYA----------- 443 Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHS 445 G ++ EL++ T + P + Sbjct: 444 --VDG----RYVDELSDYCTGCRYQPET 465 >gi|170751994|ref|YP_001758254.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium radiotolerans JCM 2831] gi|170658516|gb|ACB27571.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium radiotolerans JCM 2831] Length = 534 Score = 39.4 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 54/406 (13%), Positives = 113/406 (27%), Gaps = 47/406 (11%) Query: 37 VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS---IEW 93 V+ V + + +H ++ F++A++ L +G+ Y + ++ ++ Sbjct: 40 VLIVEVRDEATYVRHHK--QKIAFLFAAMRHFAAELEAEGLAVDYVRLTDAGNTGSFTGE 97 Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L+ + R ++ E + + L V ++ + + + Sbjct: 98 LERAVARHRPDRVVVTEPGEWRVWEMMQDWRETLAIPVEIRADNRFLCPREDFSRWAEGR 157 Query: 154 MYKVYTPFRKALIQNL-------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 + F + + + A R P R P R P Sbjct: 158 HHLRMETFYRGMRRRTGLLMDDDEPAGGRWNYDPENRKRLPKGQQPPDRIGFQPDAVTRQ 217 Query: 207 MF-----PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ----------------- 244 + G+ + + R A + Sbjct: 218 VIALVEAEFGDHFGDLTGFSWPVTRADALAALRHFLADALPTFGDYQDAMKTGAPFLYHA 277 Query: 245 -LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303 LSP L+ G+L+ + + + D + L WRE+ R L Sbjct: 278 LLSPALNAGLLTAEEVCWAAERAYRDGVAPLHCVEGFIRQILGWREYVRGLYWARMPGYR 337 Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363 + + W W G T + + + + H+ R++ Sbjct: 338 DSNALGAGRDLPWFY-------W-SGETALNCVAQVVGETRAHAYAHHIQRLMVTGNFAL 389 Query: 364 DLLVDWRIGEEYFMSQLLD-GDLA--SNNGGW-QWAASTGNDSVPY 405 +D EE+++ D + N G WA S PY Sbjct: 390 IAGLDPAQVEEWYLIVFADAYEWVELPNVHGMVLWADGGVMGSKPY 435 >gi|149925197|ref|ZP_01913492.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1] gi|149813925|gb|EDM73576.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1] Length = 231 Score = 39.4 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 11 LVWL--RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68 L W+ R N AL A +++ + + P + S R F+ + Sbjct: 29 LHWMIAHR--RTRHNFALQHALFHAERLQKPLVVLEPLRVGYRWASDRMHRFVLEGMAVN 86 Query: 69 QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 + ++ G+ + + L + Sbjct: 87 ARRFAKAGVTYLPYVEDRPGAGSGLLAALAQD 118 >gi|312090737|ref|XP_003146725.1| thrombospondin type 1 domain-containing protein [Loa loa] gi|307758111|gb|EFO17345.1| thrombospondin type 1 domain-containing protein [Loa loa] Length = 981 Score = 39.4 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 21/300 (7%), Positives = 58/300 (19%), Gaps = 22/300 (7%) Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 + + + + +E R H+V+ + K + + Sbjct: 325 MIQRYRICNEGECKGENVEWRKCHQVVPCVASWADWTSWSICSVTCGIGEKTRSRYCYLG 384 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 + +D + + G + I + N Sbjct: 385 MGYCTGSDHEIIQCETVPCPGWGQWESWSHCSVTCGTGTKRRSRICDGNNCIGDAYQETY 444 Query: 226 KVYY----YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-NRLKEEFVDLLIKPKSGAFS 280 + E ++ A + V R+C ++ + Sbjct: 445 CHQDECEEWSEWQEWSACSVSCGEGVITRERVCMGRECIGESSEQNVCMEQACSTWQEWG 504 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG-----YTGFPI 335 + + + + P + AW++ G + Sbjct: 505 QWSACSAKCNFGISTRKRLCHGIFCPGKRVEIMPCHAGRCMIWSAWQEWSECSVTCGSGM 564 Query: 336 IDAAMRQLNTIG------------WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + + ++ + LDG Sbjct: 565 QQRYRTCIGADCPGNAEDIQYCETGVSCPQWTEWTAWSKCSQDCGIGERIRHRECLFLDG 624 >gi|301617896|ref|XP_002938366.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like, partial [Xenopus (Silurana) tropicalis] Length = 2091 Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 30/321 (9%), Positives = 61/321 (19%), Gaps = 26/321 (8%) Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169 Y + + H + D P ++ K + Sbjct: 1541 CMYPCDFRLPCGHVCTLNCHPYDSEHKDYVCNKPCHKVICENGHTCKNKCSEPCGKCKQP 1600 Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229 V + P + G + + Sbjct: 1601 VPKQIEKCGHI------QDIPCSQSADTFVCKAHCAQFLQCGHKCVRWCGQTCTINCPEK 1654 Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 + + T + + +C R +E+ + P S Sbjct: 1655 VIVTLECGHTMKTLCHLKSKAEKDGTKIRCSVRCEEKLSCGHLCPGSCNSCLEQGFHHSC 1714 Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349 + S + I + P M L Sbjct: 1715 NNSCDIILLCSHRCEEKCAAGCFCIRACEKKCFHGK-CTSKCSDPCTPCTM--LCGWCCA 1771 Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQL----LDGDLASNNGGWQWAASTGNDSVPY 405 H + + + D + + L G+ D+ Sbjct: 1772 HEKCTKLC--WEPCDREPCNEPCNKSLKCKHPCIGLCGEPCP-------QKCRICDAEEV 1822 Query: 406 FRIFNPTIQGKRFDPQGTFIR 426 +F GK DP F++ Sbjct: 1823 TELF----FGKEDDPDARFVK 1839 >gi|255263576|ref|ZP_05342918.1| bcct transporter [Thalassiobium sp. R2A62] gi|255105911|gb|EET48585.1| bcct transporter [Thalassiobium sp. R2A62] Length = 508 Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 55/415 (13%), Positives = 117/415 (28%), Gaps = 44/415 (10%) Query: 25 ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84 AL AA + D V+A + H ++ F+ AS+ + K L + G +Y Q Sbjct: 18 ALEAADKSHDVVVMAEVVDETGYVPHH---PKKIAFVLASMRKFAKRLRRDGWTVRYTQL 74 Query: 85 SNFDDSIEWLDSYCLQQRVTKLF----------------------YNRQYEINEVRRDKL 122 + D++ + + + + + Sbjct: 75 DDDDNAGSIVGELMRAADELGVHDVIATEPGEWRLISALEDIPLEISILPDTRFIATHTE 134 Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182 E+ + R + + + L K + ++ Sbjct: 135 FEEWAEGRKELRMEWFYRDMRRKTGLLMDGDKPKGGKWNYDHDNRKAPPKEIDFSGPLRF 194 Query: 183 RLTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235 V+ + +Q H + + Y Sbjct: 195 EPDDEVSAVLDLVEQRFGQNFGDLRPFWFATDHEGAQQQVDHWIAGGLAQFGDYQDAMIT 254 Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295 S +S Y+++G+L P +++ + + + + WRE+ R + Sbjct: 255 DQPFLFHSVVSFYINVGLLDPLAVCRQVETAYRAGVAPLNAAEGFIRQIIGWREYMRGIY 314 Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355 + + + + W G T I+ A+ Q + H+ R+ Sbjct: 315 VLEGPDYTSRNALGHSRDLPAFF-------W-GGETNMRCIEQAVGQTQEHAYAHHIQRL 366 Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + +D R E++++ D + A N G Q+A S PY Sbjct: 367 MVTGNFALIAGIDPRQVHEWYLAVYADAFEWVEAPNVIGMSQFADGGIVASKPYV 421 >gi|293377912|ref|ZP_06624093.1| LPXTG-motif cell wall anchor domain protein [Enterococcus faecium PC4.1] gi|292643459|gb|EFF61588.1| LPXTG-motif cell wall anchor domain protein [Enterococcus faecium PC4.1] Length = 1498 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391 +P A Q + N + ++ + G Y L+D D Sbjct: 232 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 291 Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435 W+ +AA G+ + N Q + D G +I+ W+ P L+N Sbjct: 292 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 349 Query: 436 PTQYIH 441 PT +H Sbjct: 350 PTSDLH 355 >gi|257895102|ref|ZP_05674755.1| von Willebrand factor domain-containing protein [Enterococcus faecium Com12] gi|257831667|gb|EEV58088.1| von Willebrand factor domain-containing protein [Enterococcus faecium Com12] Length = 1341 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391 +P A Q + N + ++ + G Y L+D D Sbjct: 75 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 134 Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435 W+ +AA G+ + N Q + D G +I+ W+ P L+N Sbjct: 135 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 192 Query: 436 PTQYIH 441 PT +H Sbjct: 193 PTSDLH 198 >gi|227552322|ref|ZP_03982371.1| von Willebrand factor, type A [Enterococcus faecium TX1330] gi|227178545|gb|EEI59517.1| von Willebrand factor, type A [Enterococcus faecium TX1330] Length = 1518 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391 +P A Q + N + ++ + G Y L+D D Sbjct: 252 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSPYDGENLIDDSDYTIGGAN 311 Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435 W+ +AA G+ + N Q + D G +I+ W+ P L+N Sbjct: 312 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 369 Query: 436 PTQYIH 441 PT +H Sbjct: 370 PTSDLH 375 >gi|326404142|ref|YP_004284224.1| hypothetical protein ACMV_19950 [Acidiphilium multivorum AIU301] gi|325051004|dbj|BAJ81342.1| hypothetical protein ACMV_19950 [Acidiphilium multivorum AIU301] Length = 312 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 12 VWLR---NDLRITDN-KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64 VW++ LR D+ AL AA V+ VF P ++ ++ F++ + Sbjct: 140 VWIKAHERLLR--DHRPALLAAAERGVQVVLIVF-GDPSVVDEYPLAPPSRIFMHEN 193 >gi|257094709|ref|YP_003168350.1| deoxyribodipyrimidine photolyase-like protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047233|gb|ACV36421.1| deoxyribodipyrimidine photolyase-related protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 512 Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 106/375 (28%), Gaps = 34/375 (9%) Query: 26 LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI-------YASLLQVQKSLSQKGIV 78 L+ A K+IA+F A + RQ + + H++ +L +L I Sbjct: 44 LHHA-----QKIIAIFAAMRDLARQLRAAGHRVHYLTIDDPDNRQALPD---NLDALMIR 95 Query: 79 FQYHQCSNFDDSIEW-----LDSYCLQQRVTKLFYNRQYEINEVRR----DKLLEKRLQH 129 F + EW L Y + + ++ ++ + Sbjct: 96 FNVRALE-YQTPDEWRLDAQLADYGRSRSIPCRMVESEHFYTLRDEAARLFSGRKQWVME 154 Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189 + +L G+ Q + + AD R+ + V+ Sbjct: 155 KFYRHMRVQHRVLTHGASQPVGGQWNFDHDNRKPWPGLPSEPADFRASHDHSALWQTIVS 214 Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPY 248 Q P+ L + + + A + S LS Sbjct: 215 AGVNSFGEANAGQLAWPLNRADALQQLDAFIEKALPHFGLFQDAMSHRAWRLFHSLLSFA 274 Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308 L+ +L PR+ R + + + + + WRE+ R + + + Sbjct: 275 LNTKMLDPREVVARAEAAWHAGCVSLATAEGFIRQIIGWREYVRGFYWAHMPEYVEQNVF 334 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 T + W G T + A+ Q + H+ R++ +D Sbjct: 335 DHTRALPGWF-------W-NGQTKMRCLAHAIGQSLEQAYAHHIQRLMVIGNFALLAGLD 386 Query: 369 WRIGEEYFMSQLLDG 383 +++ +D Sbjct: 387 PAGVHRWYLGVYVDA 401 >gi|257051353|ref|YP_003129186.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus utahensis DSM 12940] gi|256690116|gb|ACV10453.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus utahensis DSM 12940] Length = 510 Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 97/395 (24%), Gaps = 55/395 (13%) Query: 30 CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 D V+ I + ++ +++++ + L G YHQ F D Sbjct: 18 AERPDEPVLL--IEAHAFAERLPYHPQKLTLVFSAMRHFRDELRDAGRDVHYHQVETFGD 75 Query: 90 SIEW----------------------LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 ++ L S ++ + + Sbjct: 76 GLDAHFDDTPADDLRMMCPAGGDADRLRSLVEERGGSLEIVENSLFCCSRKLFDDWAADR 135 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + L + N P Sbjct: 136 TGDNYRHEDFYRHIRRETGYLMDDDEPVG---GEWNYDEDNRETPPDDWTPPGPPTFERD 192 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------------------Y 228 ++ + F P G A ++ + Y Sbjct: 193 EITRDVDSWVADRFDGSYDEAPYGGSWADPEAFRWPVTRQQALSALEDFCTDRLATFGSY 252 Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288 QRD S LS L++G+L PR+ R + F S L WR Sbjct: 253 QDAMQRD-SWAMSHSLLSSSLNLGLLDPREVIERAIDTFERGDAPLNSVEGFVRQVLGWR 311 Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348 EF RH+ + TE + W G T + + + G+ Sbjct: 312 EFMRHVYRRERDELGAANQLNATEPLPDFF-------W-TGETDMACLADVIEGVRRRGY 363 Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 H+ R++ S ++ R +F + +D Sbjct: 364 SHHIERLMVLSNFGTTFGIEPRALNRWFHAAYVDA 398 >gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 523 Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 63/445 (14%), Positives = 123/445 (27%), Gaps = 55/445 (12%) Query: 8 SVHLVWL---RNDLRITD-NKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 S L W+ R D N A A + ++I + + S R F Sbjct: 46 SYVLYWMQAYRR----FDANHAFNHAVNLAKELNKELI---VYEGLRMDYPWNSERIHQF 98 Query: 61 IYASLLQVQKSLSQKGIVFQ--YHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117 I +++ Q + I + N ++ + E E Sbjct: 99 ILEGMIENQTRADELEIKYWPFVETPKNLGKGLLKEISENASVVVTDDFPCFIIPEQTEK 158 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175 K+ + L + L ++K + + + + Sbjct: 159 LAKKIHCQLLAIDGNSLIPFSRFAKQASAARILRLWIHKELNREFPKMNTIIWKNEDLSK 218 Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P + + G AL +L F K K+ Y+ Sbjct: 219 LNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYLT 278 Query: 233 QRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284 +R P TS LSPYL G + + + + + P+ + + Sbjct: 279 KRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFY 338 Query: 285 -------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQ 324 + WR+ + +P + + + + L+ Sbjct: 339 SPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLE 398 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQLL 381 ++ T + +AA +L G +HN +RM+ +++ E Sbjct: 399 QFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKKVIEWSKTYEEAFFILEHLNNKYAY 458 Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406 DG ++ G W G P+F Sbjct: 459 DGRNPNSYTGILW--CFGLFDRPWF 481 >gi|254468054|ref|ZP_05081460.1| deoxyribodipyrimidine photolyase family protein [beta proteobacterium KB13] gi|207086864|gb|EDZ64147.1| deoxyribodipyrimidine photolyase family protein [beta proteobacterium KB13] Length = 509 Score = 39.0 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 83/295 (28%), Gaps = 8/295 (2%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + D L+ + + + + + +L G Sbjct: 112 EMKKITDQIGLEHQSYSTEHFLTHRQDLRDFFTKKKIWRMEEFYRHIRKKYSILMVGDKP 171 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 Y + Q++ + V ++ D Sbjct: 172 IGDKWNYDQDNRKKWDPKQSIPDRIKFNHDVGHLKDEIDKLEIGYIGSVDTKNFNWPSNE 231 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 Q H +R + + + S +S L+ +LSP + ++E Sbjct: 232 EESLQVLNHFIRFSLDKFGDFQDAMSNENPYLFHSLISFALNTKMLSPLKIAETVEENLK 291 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 L + + WRE+ R + F+ + K+ W Sbjct: 292 KDLSNLSAVEGFIRQIIGWREYIRGVYWAKMPEYGQSNFLKFKNKLPEFF-------W-H 343 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 G T + +++Q + H+ R++ + VD ++ E+F++ +D Sbjct: 344 GKTNMNCLQKSIQQSLQHAYAHHIQRLMILGNFMLLSEVDPKLVHEWFLAIYIDA 398 >gi|325002489|ref|ZP_08123601.1| deoxyribodipyrimidine photolyase-related protein [Pseudonocardia sp. P1] Length = 496 Score = 39.0 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 11/176 (6%) Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293 RD S LS L++G L P + ++ + D + +S L WREF Sbjct: 249 RDWAMAH--SLLSVPLNLGALHPLEAVRAAEQAYHDGTARLESVEGFVRQVLGWREFVWQ 306 Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 L + + + A + +A+ + GW H+ Sbjct: 307 LYWRFGRGYTRSNHLRARTPLPDWWAGLDAGAVTAS-----CLSSALSDVRDRGWTHHIP 361 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405 R++ ++F + +DG + G Q A + PY Sbjct: 362 RLMILGNHAMQRGYRPDEVNDWFATAFVDGFAWVMPPNVIGMSQHADGGRMTTKPY 417 >gi|45383436|ref|NP_989691.1| ephrin type-A receptor 1 [Gallus gallus] gi|13517100|dbj|BAB40433.1| tyrosine kinase receptor EphA9 [Gallus gallus] Length = 969 Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 37/325 (11%), Positives = 87/325 (26%), Gaps = 11/325 (3%) Query: 86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145 +DD + + + V+ + E RL K + Sbjct: 596 PYDDPSRGVLEFIKELDVSCVTMENVIGEGEFGEVYRGSLRLP----GKERIVVAIKTLK 651 Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205 S + + + + L + + + + + Sbjct: 652 STYSDSQWWNFLREATIMGQFNHPNIVHLEGVVTKRRPMMIITEYMENGALDTFLRENEE 711 Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P+ N L + + RD+ A S + + E Sbjct: 712 KFSPVQLVNMLQGIASGMTYLSEHNYVHRDLAARNILVTRSLQCKVSDFGLSRILENDAE 771 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + ++ + R F + + M + + + ++++ Sbjct: 772 GTYETKGGKIPIRWTAPEAIAHRIFTSASDVWSFGIVMWEVLSFGDKPYGNMTNQEVMKS 831 Query: 326 WKQGYTGFPIIDA--AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + GY P +D + +L W H+R+R + L + + + D Sbjct: 832 LEDGYRLPPPVDCPSILYELMKSCWSHDRMRRPHFQEIRAQLQHFS--SSPHLLRCVADF 889 Query: 384 DLASNNGGWQWAASTGNDSVPYFRI 408 D + + +G+D +PY I Sbjct: 890 DPRVTL---RLPSCSGSDGIPYRSI 911 >gi|156094364|ref|XP_001613219.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802093|gb|EDL43492.1| hypothetical protein PVX_097795 [Plasmodium vivax] Length = 1565 Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 36/147 (24%), Gaps = 2/147 (1%) Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291 E R+ S + ++ ++E + L I K L ++ Sbjct: 81 EHRNSVIANFNDLYGAKGRTITKSLMEIFHLNEDEEIMLFITQKFLHIYGLCVPCFKFSS 140 Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + + C T+ +L + + L + Sbjct: 141 PNSVCSNNIRCKWCHHYSHTDTNSSLHPHKMLHMRSKCKVCSYLSRDGFCFLQNECHFCH 200 Query: 352 RLRMI--TASFLVKDLLVDWRIGEEYF 376 + + +L D +++ Sbjct: 201 SVEHLPSRVRQTYFHMLNDLYEKKKHT 227 >gi|187478087|ref|YP_786111.1| DNA photolyase [Bordetella avium 197N] gi|115422673|emb|CAJ49200.1| putative DNA photolyase [Bordetella avium 197N] Length = 538 Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%) Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297 SQLS L++ +LS R+ + + + +S L WRE+ R L Sbjct: 288 PWLYHSQLSAALNLKLLSAREVVQAAELAYRAGRVPLQSAEGFIRQILGWREYVRGLYWT 347 Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWK-QGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 P + L AW G T + + Q +G+ H+ R++ Sbjct: 348 QM---------PGYLERNALGADEALPAWYWTGQTQMACLREVLHQTLALGYAHHIQRLM 398 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 A L V + ++++ +D +L + G Q+A S PY Sbjct: 399 VAGLFALLLGVRPQQLHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPYV 452 >gi|260815713|ref|XP_002602617.1| hypothetical protein BRAFLDRAFT_81899 [Branchiostoma floridae] gi|229287928|gb|EEN58629.1| hypothetical protein BRAFLDRAFT_81899 [Branchiostoma floridae] Length = 712 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/285 (5%), Positives = 48/285 (16%), Gaps = 9/285 (3%) Query: 97 YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156 Y Y R + H + + + + Sbjct: 391 YARYNHDITNHYPRHNHGITNHYARYNHDITNHYPRHNHGITNHYARYNHDITNHYPRHN 450 Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216 + + P I + I P + Sbjct: 451 HGITNHYPRHNHGITNHYPRHNHYIYTNHYPRHNHGITNHYPRYNHDITNHCPRYNHHIA 510 Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276 + ++ + +Y A + N + Sbjct: 511 NHYARYNHDISNHYPRYNHHIANHYPRHNHDITNHYPRHNHGITNHYTRYNHGITNHYAR 570 Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336 N + + + + I + H +P Sbjct: 571 HNHGITNHYARHNHGITNHYARHNHGITNHYPRYNHGITNHYPRHNHGI----TNHYPRH 626 Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381 + + + + H+ I + + + + Sbjct: 627 NHGITN-HYTRYNHH----IANHYSRYNHHIANHRTNYHIADHFT 666 >gi|260063634|ref|YP_003196714.1| hypothetical protein RB2501_02470 [Robiginitalea biformata HTCC2501] gi|88783079|gb|EAR14252.1| hypothetical protein RB2501_02470 [Robiginitalea biformata HTCC2501] Length = 510 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 30/308 (9%), Positives = 69/308 (22%), Gaps = 18/308 (5%) Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--GSILN 149 + L C + ++ + V+ + + Sbjct: 110 QQLRELCEALDCETQAVDTEHFYTGRSDLAEFFDGKKQMVMESFYRMMRRKHQVLMDEGD 169 Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + RK R L + + + + + + Sbjct: 170 PLGGRWNFDGDNRKKWKGEPEIPHERGFRKDLTALEQEIRDAGVETIGEVDADSFNWPTS 229 Query: 210 --IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 G H Y S+LS L+ +LSPR+ +++ + Sbjct: 230 RADGLAVLRHFCDSLLVHFGDYQDAMHTGEKYLFHSRLSFALNTKMLSPREVVEKVEATY 289 Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 D + ++ + + Sbjct: 290 RDDPDAIDLSQTEGFIRQVLGWREYMRGVYWKEMPGYADGNALGNENPLPDFYW------ 343 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387 G T + A+RQ + H+ R++ D + +++ +D Sbjct: 344 TGETKMNCLSHAIRQSLDTAYAHHIQRLMITGNYALLTQTDPDQVDAWYLGIYIDA---- 399 Query: 388 NNGGWQWA 395 QW Sbjct: 400 ----IQWV 403 >gi|56752235|ref|YP_172936.1| hypothetical protein syc2226_c [Synechococcus elongatus PCC 6301] gi|81300677|ref|YP_400885.1| hypothetical protein Synpcc7942_1868 [Synechococcus elongatus PCC 7942] gi|56687194|dbj|BAD80416.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169558|gb|ABB57898.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 143 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 18/83 (21%) Query: 23 NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 N AL + A A+++ + IS ++ FIY LL++ Sbjct: 16 NPAL---LRHPKAP--ALWVWDDSLLKDWQISLKRVVFIYECLLEL---------PVTIR 61 Query: 83 QCSNFDDSIEWLDSYCLQQRVTK 105 + D L + Sbjct: 62 R----GDPATELRRFAQAHGADC 80 >gi|88802911|ref|ZP_01118438.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P] gi|88781769|gb|EAR12947.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P] Length = 493 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 12/170 (7%) Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 S L+P L++G+L+P + I S + WREF R S Sbjct: 260 NHSVLTPMLNVGLLTPENIVAQSIAFAKANNIPINSLEGFVRQIIGWREFMRGFYESRGS 319 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + F +T+KI ++ G TG ID +++ G+ ++ R++ Sbjct: 320 DARTRNFWEFTKKIPK--------SFYDGTTGIYPIDETIKKTLKTGYCNHIERLMILGN 371 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPYF 406 + D +FM +D D N G Q+A + PY Sbjct: 372 FMMLCEFDPDEVYRWFMELFIDSYDWVMVPNVYGMSQFADGGLMATKPYI 421 >gi|309779651|ref|ZP_07674410.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp. 5_7_47FAA] gi|308921592|gb|EFP67230.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp. 5_7_47FAA] Length = 513 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 50/402 (12%), Positives = 107/402 (26%), Gaps = 38/402 (9%) Query: 26 LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY-----------ASLLQVQKSLSQ 74 L+ A K++A+F A + R + + ++ +L + Sbjct: 45 LHHA-----QKILAIFAAMRDFARGLRAAGHRVRYVAIDDGSNRQSVTENLAALA---RH 96 Query: 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR----RDKLLEKRLQHR 130 G Q + E L + Q ++ + ++ + + ++ L R Sbjct: 97 YGAERVEWQSPDEWRLDEQLRRWAEAQSLSTSEVDTEHFLTGRHELAAMFEGRKQWLMER 156 Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190 + +L G+ + Q + + AD R + Sbjct: 157 FYREMRRRFGVLLDGTGAPESGQWNFDHDNRKPWRGSPPEPADARPVHDHRALWETIERS 216 Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYL 249 P+ L + + + S LS L Sbjct: 217 GVKSFGNPQAGALRWPLNRTEALACLDAFVAQVLPHFGDFEDAMSSGHQRLFHSLLSFSL 276 Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFI 308 ++ +L+PR+ +R + + + L WRE+ R + P Sbjct: 277 NVKMLNPREVIDRAEAAYRHGKAPLPAVEGFIRQILGWREYVRGIYWAQMPGYASCNVLN 336 Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368 W + A+ Q H+ R++ + Sbjct: 337 HDAPLPSWFWSGKTQMR---------CLQLAIGQSLQTAHAHHIQRLMVIGNFALLAGLA 387 Query: 369 WRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 +++ +D +L + G QWA + PY Sbjct: 388 PDEVHRWYLGVYIDAFEWVELPNTVGMSQWADGGRIATKPYV 429 >gi|257886511|ref|ZP_05666164.1| von Willebrand factor domain-containing protein [Enterococcus faecium 1,141,733] gi|257822565|gb|EEV49497.1| von Willebrand factor domain-containing protein [Enterococcus faecium 1,141,733] Length = 413 Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDLASNNGG 391 +P A Q + N + ++ + G Y L+D D Sbjct: 248 YPSGIAENDQHRYPRFTTNDYTKVLGNWSQSNERYQGEKGSLYDGENLIDDSDYTIGGAN 307 Query: 392 WQ---WAASTGNDSVPYFRIFNPTIQGKRF------------DPQGTFIRHWL-PELNNV 435 W+ +AA G+ + N Q + D G +I+ W+ P L+N Sbjct: 308 WRNYDYAADNGSTAGEED--VNVPAQTVQLWGDERNFENSYLDYNGAYIKKWVEPVLSNN 365 Query: 436 PTQYIH 441 PT +H Sbjct: 366 PTSDLH 371 >gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 496 Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 63/445 (14%), Positives = 123/445 (27%), Gaps = 55/445 (12%) Query: 8 SVHLVWL---RNDLRITD-NKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60 S L W+ R D N A A + ++I + + S R F Sbjct: 19 SYVLYWMQAYRR----FDANHAFNHAVNLAKELNKELI---VYEGLRMDYPWNSERIHQF 71 Query: 61 IYASLLQVQKSLSQKGIVFQ--YHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117 I +++ Q + I + N ++ + E E Sbjct: 72 ILEGMIENQTRADELEIKYWPFVETPKNLGKGLLKEISENASVVVTDDFPCFIIPEQTEK 131 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-- 175 K+ + L + L ++K + + + + Sbjct: 132 LAKKIHCQLLAIDGNSLIPFSRFAKQASAARILRLWIHKELNREFPKMNTIIWKNEDLSK 191 Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 P + + G AL +L F K K+ Y+ Sbjct: 192 LNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYLT 251 Query: 233 QRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----- 284 +R P TS LSPYL G + + + + + P+ + + Sbjct: 252 KRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFY 311 Query: 285 -------------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQ 324 + WR+ + +P + + + + L+ Sbjct: 312 SPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLE 371 Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQLL 381 ++ T + +AA +L G +HN +RM+ +++ E Sbjct: 372 QFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKKVIEWSKTYEEAFFILEHLNNKYAY 431 Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406 DG ++ G W G P+F Sbjct: 432 DGRNPNSYTGILW--CFGLFDRPWF 454 >gi|89056132|ref|YP_511583.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp. CCS1] gi|88865681|gb|ABD56558.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp. CCS1] Length = 508 Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 49/384 (12%), Positives = 102/384 (26%), Gaps = 40/384 (10%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD----SIEWLDS---------YCLQQ 101 ++ F++A++ + +L G +Y + + ++ E L + + Sbjct: 46 PKKIAFLFAAMRKFAAALRDDGWQVRYTKLDDAENAGSIPGEILRACEATGAAEVLATEP 105 Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-------FDDSVLLPPGSILNHALQM 154 +L + V + H + + Sbjct: 106 GEFRLIAALEDMPIPVHQFPDDRFLCSHAEFAAWAEGRKELRMEWFYREMRRKTGLLMDG 165 Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---- 210 K N P VT + + P Sbjct: 166 DKPEGGKWNYDHDNREPPPGSVDAAPMHFTPDDVTEEVLTLVASRFHNNFGTLTPFWFAT 225 Query: 211 ----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + H ++ + S +S YL+ G+L R+ + ++ Sbjct: 226 DTGQARRALAHWVKTALPRFGDFQDAMMQGERFLYHSIISMYLNAGLLGWREICDAAEQA 285 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + D + + WRE+ R + + + T + W Sbjct: 286 YRDGDAPLNAVEGFIRQIIGWREYMRGIYFLEGPDYTSRNTLKHTRDLPGFY-------W 338 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 G T + A+ Q + H+ R++ VD E++++ D + Sbjct: 339 -SGETDMLCLSEAITQTREEAYAHHIQRLMVTGNFALLAGVDPHQVHEWYLAVYADAYEW 397 Query: 386 --ASN-NGGWQWAASTGNDSVPYF 406 A N G Q+A S PY Sbjct: 398 VEAPNVIGMSQFADGGVVGSKPYV 421 >gi|76802612|ref|YP_327620.1| hypothetical protein NP3956A [Natronomonas pharaonis DSM 2160] gi|76558477|emb|CAI50069.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 511 Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 46/421 (10%), Positives = 91/421 (21%), Gaps = 57/421 (13%) Query: 25 ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84 L + ++D +V+ I R+ + +++++ + L + G Y + Sbjct: 15 PLASDARSTDERVLC--IEARAFARRKPYHPHKLTLVFSAMRHFRDRLREAGYTVDYRRV 72 Query: 85 SNFDD-----------------------SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 F + + + L + T F Sbjct: 73 ETFAEGLDAHFAAHPEDHIVTVRRTAHGATDRLQRLVANRGGTVEFVADPRFHCSREEFD 132 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181 + + + + + P Sbjct: 133 A---WADGDPPYRHESFYRHMRRETGYLMDGDEPVGGEWNFDDENREFPGPEYVPPEPPQ 189 Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC-----------------K 224 + D G Sbjct: 190 FEPDETTREVREWVDATFGEDGYDDAPYGGAWADPEPFSWPVTREGALQALEAFIEERLP 249 Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284 Y + LS L++G+LSP + F + + S Sbjct: 250 TFGPYQDAMLGDEWAMNHALLSSSLNLGLLSPSEVIEAALAAFEEGSVSIASVEGFLRQV 309 Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344 L WREF RH P + E+ A + A+ + Sbjct: 310 LGWREFVRHAYRRTPGMAAANQLGAAEPLPEFFWTGDTDMA---------CVADAVDGVR 360 Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404 T G+ H+ R++ S V+ E+F + +D G Sbjct: 361 TRGYAHHIERLMVLSNFATLYGVEPSRLNEWFHAAFVDAYHWVTTPN---VVGMGTFGTD 417 Query: 405 Y 405 Sbjct: 418 T 418 >gi|86134107|ref|ZP_01052689.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp. MED152] gi|85820970|gb|EAQ42117.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp. MED152] Length = 510 Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 30/294 (10%), Positives = 72/294 (24%), Gaps = 10/294 (3%) Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 E+ D ++ +V + + K ++ L +L Sbjct: 114 EFCDLLTIESKVYTTEHFYTDRNDLASFFKGKKQFLMESFYRNMRKKHQILMVNEQPEGG 173 Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211 Y + + A V I + + Sbjct: 174 KWNYDARNRKKWKGETLIPSAKNFDNDVSEIVTEIEKAGVETIGKINAKYFEYPISRKQA 233 Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271 + Y S++S ++ ++SP++ + Sbjct: 234 LTQLSYFCGHLLVHFGDYQDAMHTDQVFLFHSKISFAMNTKMISPKEIVETTLATYRKRK 293 Query: 272 IKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 + + WRE+ R + + F+ K+ W G Sbjct: 294 DEIDISQVEGFIRQIIGWREYMRGMYWMLMPDYKKENFLNNKNKLPDFF-------W-TG 345 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 T + A+ G+ H+ R++ +D + +++ +D Sbjct: 346 KTKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIDPDEIDAWYLGIYVDA 399 >gi|126662377|ref|ZP_01733376.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38] gi|126625756|gb|EAZ96445.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38] Length = 510 Score = 38.3 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 34/325 (10%), Positives = 82/325 (25%), Gaps = 18/325 (5%) Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVR----RDKLLEKRLQHRVICKSFDDSVLLPPGSI 147 E L S C + + + ++ K ++ L +L G+ Sbjct: 110 EQLKSICKKLSIPTKTVDSEHFYTSRNELADFFKGKKQLLMESFYRMMRKKHDVLMVGNQ 169 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 + + + V I D Sbjct: 170 PLDGKWNFDHNNRNQYKNEVPIPFPLEFHKNVSKIITEIKSQNITTFGNIDAENFNWPTS 229 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267 Q + Y S+LS ++ ++SP++ + + + Sbjct: 230 RAESLQLIAYFCEHLLAHFGTYQDSLFSGHKFLFHSRLSFAMNSKMISPKEVVDAVIYYY 289 Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + + WRE+ R + + + Sbjct: 290 YQNQETIELAQVEGFVRQIIGWREYVRGIYWKEMPNYAQMNVLENYNPLPDFF------- 342 Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-- 383 W G T + ++ Q + + H+ R++ + + +++ +D Sbjct: 343 W-TGKTKMKCLQHSISQSLSEAYAHHIQRLMVIGNFSLLAQLHPDEVDAWYLGVYIDAIE 401 Query: 384 --DLASNNGGWQWAASTGNDSVPYF 406 ++ + G Q+A + PY Sbjct: 402 WVEMPNTRGMSQYADGGIVATKPYV 426 >gi|1218028|gb|AAC50396.1| RLF [Homo sapiens] Length = 1914 Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis] Length = 596 Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 27/100 (27%) Query: 11 LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIA---------------TPEQWRQH- 51 L W++ +R N AL A ++ + V++ ++W+ Sbjct: 39 LYWMQTSVRTKHNYALEYAVAAANKLQLPLHVVYLFPDRSVLPPLPKSEDDHDDEWKAEA 98 Query: 52 --GISA------RQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 SA R + F L + L+ +G+ F Sbjct: 99 RQDASAHAFVTERHARFALEGLADAYERLASRGVSFDVFH 138 >gi|332248570|ref|XP_003273436.1| PREDICTED: zinc finger protein Rlf [Nomascus leucogenys] Length = 1885 Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 436 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 495 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 496 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 555 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 556 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 615 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 616 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 668 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 669 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 719 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 720 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 775 Query: 389 NGG 391 G Sbjct: 776 FLG 778 >gi|297278373|ref|XP_002808256.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein Rlf-like [Macaca mulatta] Length = 1886 Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 436 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 495 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 496 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 555 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 556 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 615 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 616 E--QAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 668 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 669 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 719 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 720 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 775 Query: 389 NGG 391 G Sbjct: 776 FLG 778 >gi|219848493|ref|YP_002462926.1| hypothetical protein Cagg_1588 [Chloroflexus aggregans DSM 9485] gi|219542752|gb|ACL24490.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 157 Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 16/102 (15%) Query: 7 MSVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65 MS +VWL D L TD AL A N VI F+ R +S ++ F+Y Sbjct: 1 MSNGIVWLHGDSLSPTD-PALLA---NPATPVI--FVFDEPLLRTMQLSFKRLFFLYEC- 53 Query: 66 LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107 +L +E + ++ + T + Sbjct: 54 -----ALEAIAGR---TGSIRRGVVVEEVRAFAAEYGATVVH 87 >gi|55587020|ref|XP_524678.1| PREDICTED: zinc finger protein Rlf [Pan troglodytes] Length = 1914 Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|163754254|ref|ZP_02161377.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida OT-1] gi|161326468|gb|EDP97794.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida OT-1] Length = 511 Score = 38.3 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 38/330 (11%), Positives = 96/330 (29%), Gaps = 21/330 (6%) Query: 66 LQVQKSLSQK----GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121 + ++L Q I +Q + E L ++C + + ++ ++ + Sbjct: 80 QDLVQNLKQLMDEQKIEKFEYQLPDEYRLDEQLKNFCDELSIETEAFDTEHFLTSRTDFT 139 Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKALIQNLVQADLRSLPVP 180 + + V+ + D ++N K + + Sbjct: 140 TFFEGKKQMVMEYFYRDMRKKYDIMMVNDKNPEGGKWNFDQSNRKKWKGSPEIPQEKQLK 199 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 N + +P ++L +L FC+E + ++ + +D Sbjct: 200 NSVEDIYEMIQNAEIETIGNIDVANFHWPTNRADSLKLLDYFCEELLVHFGDYQDAMHTD 259 Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHL 294 S+LS ++ +L P++ + + D L WRE+ R + Sbjct: 260 EHFLFHSRLSFAMNSKMLHPKEVIETVISYWRDHKDAIDISQVEGFVRQILGWREYMRGM 319 Query: 295 MAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353 P+ ++ G T + A+ Q + H+ Sbjct: 320 YWKEMPNYSTLNTLNNTNSLPDFFW---------TGNTKMNCLKHAISQSLEKAYAHHIQ 370 Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 R++ + + +++ +D Sbjct: 371 RLMITGNFALLTQMHPDEVDAWYLGIYIDA 400 >gi|157671949|ref|NP_036553.2| zinc finger protein Rlf [Homo sapiens] gi|62296764|sp|Q13129|RLF_HUMAN RecName: Full=Zinc finger protein Rlf; AltName: Full=Rearranged L-myc fusion gene protein; AltName: Full=Zn-15-related protein gi|55666099|emb|CAH71081.1| rearranged L-myc fusion [Homo sapiens] gi|55859743|emb|CAI11028.1| rearranged L-myc fusion [Homo sapiens] gi|56203755|emb|CAB81608.2| rearranged L-myc fusion [Homo sapiens] gi|56205086|emb|CAI21999.1| rearranged L-myc fusion [Homo sapiens] gi|109731782|gb|AAI13667.1| Rearranged L-myc fusion [Homo sapiens] gi|119627641|gb|EAX07236.1| rearranged L-myc fusion [Homo sapiens] gi|313883624|gb|ADR83298.1| rearranged L-myc fusion [synthetic construct] Length = 1914 Score = 38.3 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|298162586|gb|ADI59660.1| cryptochrome [Paralichthys olivaceus] Length = 96 Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + A P I W+++ L W +G FP I A M QL G + + Sbjct: 1 YTDATNNPCFYNMDSTPICVMIPWDRNPKALAKWAEGRRSFPWIHAIMTQLTLDGRIDHL 60 Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDL 385 R A FL + L + W+ G + F LLD D Sbjct: 61 ARHAVACFLTRGHLRITWKEGLKVFEELLLDADW 94 >gi|197102200|ref|NP_001125258.1| zinc finger protein Rlf [Pongo abelii] gi|55727476|emb|CAH90493.1| hypothetical protein [Pongo abelii] Length = 1914 Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 645 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|302343405|ref|YP_003807934.1| deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075] gi|301640018|gb|ADK85340.1| Deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075] Length = 492 Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 114/429 (26%), Gaps = 45/429 (10%) Query: 11 LVWL---RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67 L W+ R R N L A + + I + S R FI + Sbjct: 25 LYWMCAQR---RTGWNFGLQRAAWLAGELKRPLVILEALRLDYPHASERLHCFILQGMAA 81 Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 +L+ +G ++ + L + + + I + + Sbjct: 82 NAAALAGRGALYYPYVEPARGAGKGLLAALAQRACAVVADDYPTFFIPAMLAAAAAQCAA 141 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + + + + + L Q V L LP P L Sbjct: 142 RLEAVDSCGLLPLAASDHAFPTAHAFRRFLQKNLPEHLAQPPVADPLAGLPAPPPILPRW 201 Query: 188 VTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233 + P + G A L +F + Y + Sbjct: 202 IIERWPPAWSADLARPQALIAGLAIDHAVGPVVGRVGGAAAAGATLARFLGRGLALYDQL 261 Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---------------EFVDLLIKPKSGA 278 R+ PA S LSPYL G ++ Q + L + + Sbjct: 262 RNQPAEDVGSGLSPYLHFGHIAAHQVFAALADVEGWSPQRVGGPAKGARQGWWGLSPTAE 321 Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYT 331 + WRE + P +P + + L+ + T Sbjct: 322 AFADQFITWRELGYNFCHHRPGQEGKLESLPDWAGQTLAAHAADPRPYVYDLERLETART 381 Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASN 388 I +AA QL G +HN LRM+ ++ + LDG ++ Sbjct: 382 HGAIWNAAQNQLRQEGRIHNYLRMLWGKKILHWTETPAQALAIMVHLNDRWALDGRDPNS 441 Query: 389 NGGWQWAAS 397 + G W Sbjct: 442 HSGIMWCLG 450 >gi|163738168|ref|ZP_02145584.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107] gi|161388784|gb|EDQ13137.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107] Length = 516 Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 99/345 (28%), Gaps = 14/345 (4%) Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEK 125 ++ ++L Q + E L+ + R+T + R K Sbjct: 98 ELDRALEQFTVTEVLVTEPGEYRLKEALNRWSGPARLTMLDDSRFLASHDMFRSWAEGRK 157 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +L+ + L + + A + +R P + Sbjct: 158 QLRMEYFYRDMRRKTGLLMQGDSPEGGKWNYDTENRKPAQNDMFMPKPMRCDPDRITQDV 217 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQ 244 + P F + AL Y + D S Sbjct: 218 LELVEQRFPGNFGRLTPFWFAVTRAAALKALDHFIDVALPLFGDYQDAMLDGEPFLYHSL 277 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS Y++IG+L+P + + + + + + WRE+ R + Sbjct: 278 LSQYINIGLLNPLEVCRSAERAYYEGHAPLNAVEGFIRQIIGWREYMRGIYWLKMPGYTR 337 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + W G TG + AA+ Q + H+ R++ Sbjct: 338 ENALGAKRDLPDFY-------W-SGETGMACMAAAITQTRDEAYAHHIQRLMVTGNFAML 389 Query: 365 LLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 ++ E++++ D + A N G Q+A S PY Sbjct: 390 AGINPHQVHEWYLAVYADAYEWVEAPNVIGMSQFADGGLLGSKPY 434 >gi|145224074|ref|YP_001134752.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium gilvum PYR-GCK] gi|145216560|gb|ABP45964.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium gilvum PYR-GCK] Length = 505 Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 41/355 (11%), Positives = 82/355 (23%), Gaps = 42/355 (11%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 A V+ + P S F++ L ++G+V F Sbjct: 88 ALETFKRPVL---VHEP-------TSHAAERFVHR--------LKERGLVADIVPTPTFA 129 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + ++ R + R + L + Sbjct: 130 LPRKDFQDWAGKR-------TRFRMEDFYRDQRRRFDVLMDGNEPVGNRWNYDEDNREPP 182 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 V R+ + ++ + Sbjct: 183 PKKQTTLDV------------PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTP 230 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 ++ + Y S LS L++GVL P + + Sbjct: 231 AEAKRALTRFIEHRLPHFGRYEDAMMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYR 290 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 D + L WRE+ HL + K + + A Sbjct: 291 DKQAPLAAVEGFIRQILGWREYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADA--- 347 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + A++ + GW H+ R++ E+F + +DG Sbjct: 348 --VTAQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 400 >gi|332292003|ref|YP_004430612.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170089|gb|AEE19344.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter diaphorus 4H-3-7-5] Length = 511 Score = 37.9 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 38/358 (10%), Positives = 103/358 (28%), Gaps = 24/358 (6%) Query: 63 ASL-LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-- 119 SL +++ + + I +Q + E L + + Y+ ++ + Sbjct: 80 QSLIKNIEQLIKENDISLFEYQLPDEYRLDEMLSRFRESVTIEVKSYDTEHFMTSRTDLS 139 Query: 120 -DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 +K + + + + + R + + ++ Sbjct: 140 SFFEGKKLFTMEYFYRMMRKKYDVMMINDKDPEGGKWNFDHSNRNKWKGDTLIPIEKTFD 199 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + + + + + +P + +L +L FC+ + ++ + +D Sbjct: 200 TNVSSIVKLIEKAGVKTIGRIDEKNFA--WPTNRKESLEVLDYFCEHLLVHFGDYQDAMD 257 Query: 239 IQGTSQLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYR 292 LS + S P++ + + + L WRE+ R Sbjct: 258 PDQAYLYHSRLSFAMNSKILDPQEVIETVINYWRAHKEEINISQIEGFVRQILGWREYMR 317 Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352 + + + W G T + ++ + H+ Sbjct: 318 GMYWKEMPTFATTNHLENKNPLPEFY-------W-TGKTKMNCLKCSINNSLDNAYAHHI 369 Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406 R++ + D +E+++ +D ++ + G QWA + PY Sbjct: 370 QRLMITGNYALLTMCDPAQVDEWYLGIYIDAIEWVEITNTRGMSQWADGGKIATKPYI 427 >gi|296207607|ref|XP_002807038.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein Rlf-like [Callithrix jacchus] Length = 1913 Score = 37.9 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 584 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAISEQNHSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 645 E--QAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|315444411|ref|YP_004077290.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. Spyr1] gi|315262714|gb|ADT99455.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp. Spyr1] Length = 505 Score = 37.9 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 41/355 (11%), Positives = 82/355 (23%), Gaps = 42/355 (11%) Query: 29 ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 A V+ + P S F++ L ++G+V F Sbjct: 88 ALETFKRPVL---VHEP-------TSHAAERFVHR--------LKERGLVADIVPTPTFA 129 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 + + ++ R + R + L + Sbjct: 130 LPRKDFQDWAGKR-------TRFRMEDFYRDQRRRFDVLMDGNEPVGNRWNYDEDNREPP 182 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 V R+ + ++ + Sbjct: 183 PKKQTTLDV------------PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTP 230 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 ++ + Y S LS L++GVL P + + Sbjct: 231 AEAKRALTRFIEHRLPHFGRYEDAIMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYR 290 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 D + L WRE+ HL + K + + A Sbjct: 291 DKQAPLAAVEGFIRQILGWREYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADA--- 347 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + A++ + GW H+ R++ E+F + +DG Sbjct: 348 --VTAQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 400 >gi|172087496|ref|XP_001913290.1| QI74 protein-like protein [Oikopleura dioica] gi|42601418|gb|AAS21442.1| QI74 protein-like protein [Oikopleura dioica] Length = 1072 Score = 37.9 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 14/225 (6%), Positives = 38/225 (16%), Gaps = 4/225 (1%) Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 F+N + + + K + Sbjct: 455 YFWNGIICVKCSEGYDEDGCIYCEDGSVWDPEAEECQECPEYWDPVYNECKSCKEMYGSE 514 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 A+ L G + + K Sbjct: 515 SYWDPIAEKCVFCPINHELNYETGECKRCEEGWNDSTRRCLYCNDGYEWNGYGCVK---C 571 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + RD + +P ++ + W+ L + + Sbjct: 572 PEGWDPITRDCVYCDPYEEWNP-TNMLCQPCPEDWDELYGCVPCPDNSFWNPETLECEVI 630 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + V + + + +D ++ Sbjct: 631 NTDCGEGYEWNGVECVPCPEDWNSIDGCVPCQEDYPWNPIIQECQ 675 >gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14] Length = 532 Score = 37.9 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 14/86 (16%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATP------EQWRQHGIS-----AR 56 L W++ +R T N +L A + A + ++ + EQ + + R Sbjct: 40 LYWMQTSVRTTHNYSLEYAIEAATALSLPLQVIYFFSDRSSVPEEQLSRDPNAFAFSTER 99 Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYH 82 + F L + L ++GI F+ Sbjct: 100 HAKFALEGLASTKMRLKERGIDFKII 125 >gi|309362083|emb|CAP28760.2| CBR-NPP-10 protein [Caenorhabditis briggsae AF16] Length = 1684 Score = 37.9 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 14/141 (9%), Positives = 28/141 (19%), Gaps = 6/141 (4%) Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 R + + + + + G+ RQ N + + Sbjct: 377 YKQCFRPTRWYRRKFIRKHSNEYHWWFLVWIKTSHKHGIQLWRQSTNYYECIWFHEQHWW 436 Query: 275 K--SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW----KQ 328 +Y H + + N + W +Q Sbjct: 437 WSFRKQCCQARRPFRFNYYWHYWRWSFRLATSSHIGRTFRFKRPNHAAIKHWIWKFVVQQ 496 Query: 329 GYTGFPIIDAAMRQLNTIGWM 349 P+I L M Sbjct: 497 QVAPIPVIGVTADVLQMQANM 517 >gi|223940885|ref|ZP_03632710.1| oxidoreductase domain protein [bacterium Ellin514] gi|223890450|gb|EEF56986.1| oxidoreductase domain protein [bacterium Ellin514] Length = 437 Score = 37.9 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 40/149 (26%) Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 +P + + S + + + G + + E + Sbjct: 158 APGVRSVLASAEEARKKKLSLLSGFCYRYSKGERELVKRIHDGEIGDVTSIYNSYNTSPV 217 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 P E + + +G I++ A+ +N + W+ N + + A + Sbjct: 218 WCHPRQEGWTDMQAQMRNWYYYTWLSGDHIVEQAIHNINKMAWVMNDVAPVKAIAVGGRQ 277 Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQW 394 + + + D + G Sbjct: 278 VRTQPEFGHIYDHFAVVYDYPNGVKGIHM 306 >gi|111222316|ref|YP_713110.1| putative deoxyribodipyrimidine photolyase-like protein [Frankia alni ACN14a] gi|111149848|emb|CAJ61542.1| conserved hypothetical protein; putative deoxyribodipyrimidine photolyase-related protein [Frankia alni ACN14a] Length = 516 Score = 37.9 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 9/173 (5%) Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296 S LSP L++G+L P + ++ + S L WRE+ + Sbjct: 268 DWAMAHSTLSPALNLGLLHPLEVVAAAEQAYRRGEAPIASVEGFVRQVLGWREYVWGIYW 327 Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 + + + + D A G + + + GW+H+ R++ Sbjct: 328 WAGEDYADRNALGARTPLPRWFDDLDADA-----VGAACLSDVLAGVRERGWVHHIPRLM 382 Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGD---LASN-NGGWQWAASTGNDSVPY 405 D R ++F +DG +A N G Q+A + PY Sbjct: 383 VLGNWALQRGYDPRALTDFFHESFVDGYAWVMAPNVVGMSQYADGGLMATKPY 435 >gi|33864759|ref|NP_896318.1| hypothetical protein SYNW0223 [Synechococcus sp. WH 8102] gi|33632282|emb|CAE06738.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 145 Score = 37.9 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 28/93 (30%) Query: 7 MSVH--LVWLRNDLRITD------NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58 M++ ++W I D N AL A DA A+F+ + + IS ++ Sbjct: 1 MTMQRPILW------IHDEALGPANPALRA---WPDAP--ALFVFDTQWIQASRISRKRL 49 Query: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91 F+Y + L++ + + + Sbjct: 50 GFLYEAALEL---------PLTLRKGDVAAEVL 73 >gi|163743762|ref|ZP_02151135.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter gallaeciensis 2.10] gi|161382911|gb|EDQ07307.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter gallaeciensis 2.10] Length = 516 Score = 37.9 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 100/345 (28%), Gaps = 14/345 (4%) Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLLEK 125 ++ ++L Q + E L+ + R+T + R K Sbjct: 98 ELDRALEQFTVTEVLVTEPGEYRLKEALNRWSGPARLTMLDDSRFLASHDMFRSWAEGRK 157 Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185 +L+ + L + + A + +R P + Sbjct: 158 QLRMEYFYRDMRRKTGLLMQGDSPEGGKWNYDTENRKPAQNDMFMPKPMRCDPDRITQDV 217 Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR-DIPAIQGTSQ 244 + PR F + AL Y + D S Sbjct: 218 LELVEQRFPRNFGRLTPFWFAVTRAAALKALDHFIDVALPLFGDYQDAMLDGEPFLYHSL 277 Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 LS Y++IG+L+P + + + + + + WRE+ R + Sbjct: 278 LSQYINIGLLNPLEVCRSAERAYYEGHAPLNAVEGFIRQIIGWREYMRGIYWLKMPGYTR 337 Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364 + + + W G TG + AA+ Q + H+ R++ Sbjct: 338 ENALGARRDLPDFY-------W-SGETGMACMAAAITQTRDEAYAHHIQRLMVTGNFAML 389 Query: 365 LLVDWRIGEEYFMSQLLD-GDL--ASN-NGGWQWAASTGNDSVPY 405 ++ E++++ D + A N G Q+A S PY Sbjct: 390 AGINPHQVHEWYLAVYADAYEWVEAPNVIGMSQFADGGLLGSKPY 434 >gi|114768847|ref|ZP_01446473.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255] gi|114549764|gb|EAU52645.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255] Length = 511 Score = 37.9 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 81/300 (27%), Gaps = 9/300 (3%) Query: 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146 + + +EW + + + ++ +L G Sbjct: 109 YLEMLEWENKLNIPVEIRDDDRFLCSTDEFNTWASDRKQLRMEYFYRNMRRKYDILMEGD 168 Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206 + ++ ++ + + V S F D Sbjct: 169 EPIGGQWNFDSENRKPPKNGLDVPKSYSTQPDKITMEVINLVEKSFNDHFGDLKPFNFAV 228 Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266 + K + + S +S YL+ G+L+P +C ++ Sbjct: 229 TRQQALVVLDEFIDKRLSMFGDFQDAMIEGEPWMFHSHISFYLNCGLLTPLECIKAVERA 288 Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 + D + L WRE+ R + + + F+ K+ W Sbjct: 289 YYDNRAPLNAVEGFIRQVLGWREYIRGVYWYKMPTYKSENFLEAHRKLPEFY-------W 341 Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 G T + + + + H+ R++ V ++ E+++S D + Sbjct: 342 -TGQTDMNCLKQCINETKENSYAHHIQRLMVLGNFVLLAGINPDDVHEWYLSVYSDAYEW 400 >gi|313215511|emb|CBY16220.1| unnamed protein product [Oikopleura dioica] Length = 721 Score = 37.9 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 14/225 (6%), Positives = 39/225 (17%), Gaps = 4/225 (1%) Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 F+N + + + K+ + Sbjct: 104 YFWNGIICVKCSEGYDEDGCIYCEDGSVWDPESEECQECPEYWDPVYNECKLCKEMYGSE 163 Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 A+ L G + + K Sbjct: 164 SYWDPIAEKCVFCPINHELNYETGECKRCEEGWNDSTRRCLYCNDGYEWNGYGCVK---C 220 Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285 + RD + +P ++ + W+ L + + Sbjct: 221 PEGWDPITRDCVYCDPYEEWNP-TNMLCQPCPEDWDELYGCVPCPDNSFWNPETLECEVI 279 Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330 + V + + + +D ++ Sbjct: 280 NTDCGEGYEWNGVECVPCPEDWNSIDGCVPCQEDYPWNPIIQECQ 324 >gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] Length = 215 Score = 37.9 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 13/214 (6%), Positives = 33/214 (15%), Gaps = 8/214 (3%) Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 L I + L + + + Sbjct: 4 CIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFT 63 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + + + + G +H + + Sbjct: 64 CIHWWWWIFTCLH----WCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCW 119 Query: 231 VEQRDIPAIQGTSQLSPYLS----IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286 I + S +L+ CW I + W+ + Sbjct: 120 GIFTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCL 179 Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 + + W + Sbjct: 180 HWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCW 213 Score = 36.7 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 8/210 (3%), Positives = 22/210 (10%), Gaps = 2/210 (0%) Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160 +F + C + Sbjct: 6 YWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCI 65 Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220 I + F + + Sbjct: 66 HWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCI 125 Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280 + + + + CW I Sbjct: 126 HWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHW--CWGIFTCIHWWWWIFTCLHWCW 183 Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPW 310 + + + + W Sbjct: 184 GIFTCVHWCWGIFTCIHWWWWIFTCLHWCW 213 >gi|110800016|ref|YP_695059.1| cell wall binding repeat-containing protein/zinc carboxypeptidase family protein [Clostridium perfringens ATCC 13124] gi|168211909|ref|ZP_02637534.1| cell wall binding repeat protein/zinc carboxypeptidase family [Clostridium perfringens B str. ATCC 3626] gi|110674663|gb|ABG83650.1| cell wall binding repeat protein/zinc carboxypeptidase family [Clostridium perfringens ATCC 13124] gi|170710143|gb|EDT22325.1| cell wall binding repeat protein/zinc carboxypeptidase family [Clostridium perfringens B str. ATCC 3626] Length = 550 Score = 37.5 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%) Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + +S + Y+ + + TG +N Sbjct: 67 WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 +F+ + IG + R + + + G Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 W L+++ + + + T Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + N D + + T + ID + N G M S + Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGEKESN 299 Query: 374 EYFMSQLLD 382 + LD Sbjct: 300 KVIDDWYLD 308 >gi|88802283|ref|ZP_01117810.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter irgensii 23-P] gi|88781141|gb|EAR12319.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter irgensii 23-P] Length = 510 Score = 37.5 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 81/296 (27%), Gaps = 14/296 (4%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 L S+C ++ Y+ ++ E K + ++ + + +++ + Sbjct: 112 LGSFCAALKIDASVYSTEHFYTEREDLTAFFKGKKQFLMEHFYRNMRKKHQILMIDKQPE 171 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 K + +PI Sbjct: 172 GGKWNYDASNRKKWKGEALIPPEITFDTDVTALFSEIEKAGIKTIGKINPSFFEYPISRL 231 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS----PRQCWNRLKEEFVD 269 A+ L FC + ++ + +D +S + S P++ + + E + + Sbjct: 232 QAMEQLAYFCDHLLVHFGDYQDAMHTDKIYLFHSRISFAMNSKIIAPKEVVDAVLETYRE 291 Query: 270 LLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327 L WRE+ R + + F+ K+ W Sbjct: 292 QEDAIDISQVEGFIRQILGWREYMRGMYWMLMPNYKKENFLENKNKLPAFF-------W- 343 Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 G T + A+ G+ H+ R++ + + +++ +D Sbjct: 344 TGATKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIHPDAIDAWYLGIYVDA 399 >gi|293359508|ref|XP_233485.5| PREDICTED: rearranged L-myc fusion [Rattus norvegicus] Length = 1851 Score = 37.5 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91 PE W + + LS + Y + Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L ++R K + + ++ + + + S + + Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584 Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + K F +++++ RS L P+ + + Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + + ++ RD+ GT + LS LK E + Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K RE + F + + Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 Y F ++ +L H+ LR + D + D N Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804 Query: 390 GG 391 G Sbjct: 805 LG 806 >gi|293347618|ref|XP_002726682.1| PREDICTED: rearranged L-myc fusion isoform 2 [Rattus norvegicus] Length = 1919 Score = 37.5 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91 PE W + + LS + Y + Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L ++R K + + ++ + + + S + + Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584 Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + K F +++++ RS L P+ + + Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + + ++ RD+ GT + LS LK E + Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K RE + F + + Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 Y F ++ +L H+ LR + D + D N Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804 Query: 390 GG 391 G Sbjct: 805 LG 806 >gi|149023860|gb|EDL80357.1| rearranged L-myc fusion sequence (predicted) [Rattus norvegicus] Length = 1703 Score = 37.5 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91 PE W + + LS + Y + Sbjct: 249 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 308 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L ++R K + + ++ + + + S + + Sbjct: 309 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 368 Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + K F +++++ RS L P+ + + Sbjct: 369 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 428 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + + ++ RD+ GT + LS LK E + Sbjct: 429 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 481 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K RE + F + + Sbjct: 482 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 532 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 Y F ++ +L H+ LR + D + D N Sbjct: 533 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 588 Query: 390 GG 391 G Sbjct: 589 LG 590 >gi|169342331|ref|ZP_02863401.1| cell wall binding repeat protein/zinc carboxypeptidase family [Clostridium perfringens C str. JGS1495] gi|169299556|gb|EDS81619.1| cell wall binding repeat protein/zinc carboxypeptidase family [Clostridium perfringens C str. JGS1495] Length = 550 Score = 37.5 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%) Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + +S + Y+ + + TG +N Sbjct: 67 WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 +F+ + IG + R + + + G Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 W L+++ + + + T Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + N D + + T + ID + N G M S + Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGEKESN 299 Query: 374 EYFMSQLLD 382 + LD Sbjct: 300 KVIDDWYLD 308 >gi|109477162|ref|XP_001054292.1| PREDICTED: rearranged L-myc fusion isoform 1 [Rattus norvegicus] Length = 1907 Score = 37.5 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 80/362 (22%), Gaps = 33/362 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ-----------YHQCSNFDDSI 91 PE W + + LS + Y + Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 524 Query: 92 EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L ++R K + + ++ + + + S + + Sbjct: 525 RSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTCP 584 Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + K F +++++ RS L P+ + + Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQSGIYPKSPTGSLEQNPSLSE 644 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + + ++ RD+ GT + LS LK E + Sbjct: 645 --QARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 697 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K RE + F + + Sbjct: 698 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 748 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 Y F ++ +L H+ LR + D + D N Sbjct: 749 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 804 Query: 390 GG 391 G Sbjct: 805 LG 806 >gi|154415097|ref|XP_001580574.1| hypothetical protein [Trichomonas vaginalis G3] gi|121914793|gb|EAY19588.1| hypothetical protein TVAG_228510 [Trichomonas vaginalis G3] Length = 1230 Score = 37.5 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 38/424 (8%), Positives = 100/424 (23%), Gaps = 51/424 (12%) Query: 39 AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98 +FI + F Y+SL +V ++ + + + ++ ++ + Sbjct: 551 CIFILFITLMLDPFV---VYWFRYSSLKEVSEACEKYFRPKVFEEGCEIEEFSNEVEEFS 607 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH-------- 150 L + K+ ++ I + + + + ++ + Sbjct: 608 LSSLIRKISWSVGVMIVYCVGMTICWELIFDYYYEAFAIHNTIIGIQRMQLQAAITLSSV 667 Query: 151 ---ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 + + IQ + P + F P + I Sbjct: 668 GLAWKKDVNTCRQSIQEAIQYFDDIQNYCTQFNRTYINAPQIYNATHTIFKGPKENISFH 727 Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS-PRQCWNRLKEE 266 +L L + ++ + W L + Sbjct: 728 D-YYNTGSLGALHRIIAYITHHISMNISTLVSDPAKNAVHIYFQRTYTKSLIIWAYLYDR 786 Query: 267 FVDLLIKPKSGAFSWLNELIWR----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 + L++ + + F + + + Sbjct: 787 MNEKLVQMDCICNFAIFSFVVAILILPFVFWSRYVKTDSLKMQLGRLILDLDPIFITKNQ 846 Query: 323 L------------QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370 W+ G F I+++ I HN + + + Sbjct: 847 CLVEYIIGSKTGVLPWENGSPIFDILNSTNTPFIIIN-DHNSILAFSRCISEMFSYQPEQ 905 Query: 371 IGEEYFMSQLLD-GDLASNNGGW-------QWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422 + +++ + G+ S + S+G S I N +G Sbjct: 906 LIGQHYTMLFMSKGEPPSKAHEFFFSRISDLLTMSSGCTSK----IINGVT------SEG 955 Query: 423 TFIR 426 +I+ Sbjct: 956 VYIK 959 >gi|92113024|ref|YP_572952.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter salexigens DSM 3043] gi|91796114|gb|ABE58253.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter salexigens DSM 3043] Length = 524 Score = 37.5 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 41/363 (11%), Positives = 94/363 (25%), Gaps = 42/363 (11%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS---YCLQQRVTKLFYNRQ 111 ++ + A++ L Q+G Y + D+ + +Q ++ R Sbjct: 45 PQKIAMMLAAMRHFAAELRQRGYRVHYSTLDDPDNRHSLIAEAERLAKRQGCDEIHVTRP 104 Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170 E ++ + + + + D + +++ Sbjct: 105 GEWRLLKAMEARQAQDRTPRWRIVEDTRFFCSHRDFDAWMEGRKRPRMEDFYRMLRRRTG 164 Query: 171 -----QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225 A + P+ + P Q + E Sbjct: 165 LLMDGNAPVGGQWNFDRDNRAPIDDAPSPPSPPRHRQDAVTREVLALVEKRFADHVGRLE 224 Query: 226 KVYYYVEQR-------------------------DIPAIQGTSQLSPYLSIGVLSPRQCW 260 + V +R D S+LS L+IG+LSP + Sbjct: 225 GFNWPVTRRQALADLRHFVARALPAFGTYQDAISDTAPYLFHSRLSAALNIGLLSPGEVC 284 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 ++ + + L WRE+ R + + + T + Sbjct: 285 EAAQDAWQGGEAPLNAVEGFIRQILGWREYVRGIYWHRMPAYKRENQLGATRGLPRCY-- 342 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 W G T + A+ + + H+ R++ V +++++ Sbjct: 343 -----W-DGDTDLRCLQRAIEMTHDNAYAHHIQRLMVTGNFALLCDVRPAALCDWYLAVY 396 Query: 381 LDG 383 D Sbjct: 397 ADA 399 >gi|269961333|ref|ZP_06175698.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833884|gb|EEZ87978.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 514 Score = 37.5 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 34/318 (10%), Positives = 84/318 (26%), Gaps = 26/318 (8%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + +C + + + + Q K + +R + L Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L ++ +++ + L G Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIIERLAKHDIKTIGNLEGD 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + Q D S++S Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305 L+ +L PR+ + + F S ++ + L WRE+ R A P Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ + A + A+ Q + H+ R++ Sbjct: 335 ELDAERKLPDFFWNGETKMA---------CMRNAIEQSLDYAYAHHIQRLMVTGNFCLLT 385 Query: 366 LVDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 386 EIDPDQVDEWYLGIYVDA 403 >gi|293340738|ref|XP_002724748.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus norvegicus] gi|293352105|ref|XP_002727920.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus norvegicus] Length = 645 Score = 37.5 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 21/306 (6%), Positives = 66/306 (21%), Gaps = 13/306 (4%) Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 + T+ + + + + I + + + I N+ + Sbjct: 31 EYGATRKWSTGIWNTWNMEPLEYGALEYGTTGIWNTGIWNTRIWNTRIWNYWNMEHWSME 90 Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219 + ++ + + +Y I + + N H Sbjct: 91 HWNMEPLEYGATGIWSHWNMEHWNIEHWNMEPLENGALEYGTTGIWNHWNMEHWNMEHWN 150 Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279 + + Y L G WN ++ S Sbjct: 151 MEPLEYGTLEYGTTGVWNTGIWNHWSMEPLEYGTTGVWNHWNMEHWNMEHWSMEHWSMEH 210 Query: 280 SWLNELIWREFYRHLMAFYPS------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 + L + + + + ++ + G + Sbjct: 211 WNMEPLEYGTTGIWSHWNMEPLEYGALEYRTLEYGATRKWSTGIWNHWNMEPLEYGALEY 270 Query: 334 PIIDAAMRQLNTIGWMHNRLRM-------ITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386 ++ + T+ + + + + + ++ E + M + Sbjct: 271 GTLEYGTLEYGTLEYGTTGVWNTGVWNTGVWNTGIWNHWSMEHWSMEHWSMEHWSMEHWS 330 Query: 387 SNNGGW 392 GW Sbjct: 331 LFLWGW 336 >gi|62087778|dbj|BAD92336.1| rearranged L-myc fusion sequence variant [Homo sapiens] Length = 1608 Score = 37.5 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 82/363 (22%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+ E Sbjct: 159 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDEGKEDKQYR 218 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + I Sbjct: 219 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTC 278 Query: 151 ALQMYKVYTPFRK--ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K +++++ R L P+ + + Sbjct: 279 PVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGSQKGICPKSPSAIPEQNHSLN 338 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 + + +++ RD+ GT + LS LK E Sbjct: 339 --DQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 391 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 392 NNDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 442 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 443 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCN 498 Query: 389 NGG 391 G Sbjct: 499 FLG 501 >gi|194753570|ref|XP_001959085.1| GF12236 [Drosophila ananassae] gi|190620383|gb|EDV35907.1| GF12236 [Drosophila ananassae] Length = 1431 Score = 37.1 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 34/308 (11%), Positives = 77/308 (25%), Gaps = 18/308 (5%) Query: 42 IATPEQWRQHGISARQSHFIYASLLQVQKS------------LSQKGIVFQYHQCSNFD- 88 I FI SL ++ L Q + Sbjct: 197 IVDYRVPDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNDERQRLGLNAVGI 256 Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 D++E L ++ + N EV D + L C++ + + ++ Sbjct: 257 DTMELLMDRLEKESHFQAAANGTPTGVEVDDDAVCCICL--DGECQNTNVILFCDMCNLA 314 Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 H Y P + L + +Q+ + + + + Sbjct: 315 VHQDCYGVPYIPEGQWLCRRCLQSPSKPVNC--VLCPNAGGAFKQTDHGQWAHVVCALWI 372 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 P L + R + L + S ++ + Sbjct: 373 PEVRFANTVFLEPIDSIETIPAARWRLTCYVCKEKGLGACIQCHRNSCYAAFHVTCAQQA 432 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 L + + + + + + + A P+ K +P E +A + Sbjct: 433 GLYMTMDTIKDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDFEDTRHKMR-EARKALAK 491 Query: 329 GYTGFPII 336 + P++ Sbjct: 492 KRSTAPVV 499 >gi|260833176|ref|XP_002611533.1| hypothetical protein BRAFLDRAFT_63830 [Branchiostoma floridae] gi|229296904|gb|EEN67543.1| hypothetical protein BRAFLDRAFT_63830 [Branchiostoma floridae] Length = 1310 Score = 37.1 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 17/265 (6%), Positives = 47/265 (17%), Gaps = 1/265 (0%) Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170 Y R + + + ++ + R + Sbjct: 694 WYFQKYRRAAVWYFHKYRRAAVWYFHKYRRAAAWYFHKYRRAAVWYFHKYRRAVWYFHKY 753 Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230 + R + + + + A + V+Y+ Sbjct: 754 RRAAVWYFHKYRRAAVWYFHKYRRAAWYFHKYRRAAWYFHKYRRAAVWYFHKYRRAVWYF 813 Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290 + R + R + + K + +R Sbjct: 814 HKYRRAAVWYFHKYRRAAVWYFHKYKRAAVWYFHKYRRAVWYFHKYRRAAVWYFHKYRRA 873 Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350 Y + + + W + + W Sbjct: 874 AVWYFHKYRRAAVWYFHKYRRAAVWYFHKYKRAAVWYFHKYRRAAVWYFHKY-RRAAWYF 932 Query: 351 NRLRMITASFLVKDLLVDWRIGEEY 375 ++ R + K +Y Sbjct: 933 HKYRRAAVWYFHKYRRAAVWYFHKY 957 >gi|254413184|ref|ZP_05026955.1| glycosyl transferase, group 1 family protein [Microcoleus chthonoplastes PCC 7420] gi|196179804|gb|EDX74797.1| glycosyl transferase, group 1 family protein [Microcoleus chthonoplastes PCC 7420] Length = 1239 Score = 37.1 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 26/356 (7%) Query: 40 VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF-DDSIEWLDSYC 98 ++ S R+ I+ +++ + G+ F ++ Sbjct: 295 IYCIDTWDGNDSDFSDRKFFEIWQ------QNIKKNGVDQYVVPVQGFSHQILKRWHELT 348 Query: 99 LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY 158 + V +F + ++ ++ +D L L +F D + PGS Sbjct: 349 NTREVDFIFIDGSHQYLDLLQDFQLSFPLVRNGGWIAFYDVIHTWPGSEKVWHKIAKYYL 408 Query: 159 TPFRK----ALIQN-----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 A + + L + P +I F PF + Sbjct: 409 VSHEYSSSLACGKKDNSLVIASFQLPIHFFTIVLNGEPFIRYHIEVFKQLPFPWHWHIVE 468 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 R+ + GT+ L+ + + + F D Sbjct: 469 GVADLKHDTAWSSALGGHISDEIHRNGYSKDGTTDYLDELAREYPDNVTVYRKPEGIFWD 528 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 ++ + + E + + N + W Sbjct: 529 GKLEMVNAPLA-----NIHEECLLWQIDVDELWTVEQLCTGRHLFISNPEKTAGFYWCWY 583 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385 + G ++ + + N + +++ K ++ + L D Sbjct: 584 FVGENLVIS-----TRNCYAQNPQQDWLRTWIFKPGMMWAAHEPPVLIEPLPDNQW 634 >gi|254227924|ref|ZP_04921354.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25] gi|262396093|ref|YP_003287946.1| DNA photolyase [Vibrio sp. Ex25] gi|151939420|gb|EDN58248.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25] gi|262339687|gb|ACY53481.1| DNA photolyase [Vibrio sp. Ex25] Length = 514 Score = 37.1 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 35/317 (11%), Positives = 86/317 (27%), Gaps = 24/317 (7%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + + + + + + Q K + +R + L Sbjct: 110 LLEQLAKLKLDGVVMRSVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFNI----L 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L + ++V+ R +L G Sbjct: 166 MQDGKPIGGKWNYDANNRNKLKAKDIEQLPKPLMFSHDVSDIVERLGRHNIQTIGKLNGD 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + + K Y + Sbjct: 226 LLWPVNRSQSLSLLAHFCQVCLPLFGRFQDAMTGQHEAKWSLYHSRISFS---------- 275 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKP 306 L+ +L+PR+ + + F S ++ + L WRE+ R + K Sbjct: 276 -LNSKLLNPREVIDASLKAFHANADIDISQVEGFIRQILGWREYIRGVYWANMPHYPNKN 334 Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 + + K+ W G T + A+ Q + H+ R++ Sbjct: 335 ELEASRKLPDFF-------W-NGETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTE 386 Query: 367 VDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 387 IDPDQVDEWYLGIYVDA 403 >gi|91224259|ref|ZP_01259522.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01] gi|91191170|gb|EAS77436.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01] Length = 514 Score = 37.1 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 99/318 (31%), Gaps = 26/318 (8%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + +C + + + + Q K + +R +L + Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDILMQDG 169 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + ++D + + L +++ +I+ L + D++++ L P Sbjct: 170 KPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDIHGIIERLARHDIKTIGNLEGDLLWP 229 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + + Q P Q D S++S Sbjct: 230 INRAQSLSLLAHFCQVCLP---------------LFGRFQDAMTGQHDAKWSLYHSRISF 274 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305 L+ +L PR+ + + F S ++ + L WRE+ R A P Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKNN 334 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ + A + A+ Q + H+ R++ Sbjct: 335 ELGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385 Query: 366 LVDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 386 EIDPDQVDEWYLGIYVDA 403 >gi|156977900|ref|YP_001448806.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116] gi|156529494|gb|ABU74579.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116] Length = 514 Score = 37.1 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 35/318 (11%), Positives = 84/318 (26%), Gaps = 26/318 (8%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + +C + + + + Q K + +R + L Sbjct: 110 LLEQLAKLKLDGVVARCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L ++++ + R L G Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKVKDIEQLPQPLMFSTDVRDITERLARHDIKTIGNLEGD 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + Q D S++S Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305 L+ +L PR+ + + F S ++ + L WRE+ R A P Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ + A + A+ Q + H+ R++ Sbjct: 335 KLGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385 Query: 366 LVDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 386 EIDPDQVDEWYLGIYVDA 403 >gi|291399182|ref|XP_002715235.1| PREDICTED: rearranged L-myc fusion [Oryctolagus cuniculus] Length = 1915 Score = 37.1 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 84/363 (23%), Gaps = 34/363 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++D+S E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDESKEDKQYR 524 Query: 93 --WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150 L ++R K + + ++ + + + S + + Sbjct: 525 RRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGVYTC 584 Query: 151 ALQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208 + + K F +++++ R L P+ + + Sbjct: 585 PVCIKKFKRKEIFVPHVMEHVKMPPSRRDRSRKKLLLKSSQKGVCPKSPSATLEQNQSLN 644 Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268 E + +++ RD+ GT + LS LK E Sbjct: 645 E--ETKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQ 697 Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328 + K RE + F + + Sbjct: 698 NNDENAKHYLAMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSID 748 Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388 Y F ++ +L H+ LR + D + D N Sbjct: 749 CYARFGSVN----ELLNHKQKHDDLRYKCELNGCNVVFSDLGQLYHHEAQHFRDASYTCN 804 Query: 389 NGG 391 G Sbjct: 805 FLG 807 >gi|52840460|ref|YP_094259.1| hypothetical protein lpg0205 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627571|gb|AAU26312.1| hypothetical protein lpg0205 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 512 Score = 37.1 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 106/395 (26%), Gaps = 47/395 (11%) Query: 27 YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY----- 81 AA + V +A + H ++ F+++S+ + L +KG +Y Sbjct: 19 LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSSMRHFAQQLKKKGYRVRYTTFDD 76 Query: 82 ------------------------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ Q + + + ++ Sbjct: 77 PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHGLKSQLTIPVTLHEDNRFLCKI 136 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQA 172 + K + + + Y I + + Sbjct: 137 NEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNNGKPVGGTWNYDAQNRKNANHISSFPKR 196 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + V + G V+ F + + A + + F Y Sbjct: 197 LEHTRDVITDEVLGLVSARFAKHFGQCYPFNLAVTREQALEEANYFMEHFLCNFGAYQDA 256 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 S+LS YL+ G+L P + ++ + + S L WRE+ R Sbjct: 257 MLKDEISLYHSKLSVYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVR 316 Query: 293 HLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + F P F + TG I +RQ +T + H+ Sbjct: 317 GIYWLFMPDYGEMNYFNACRPLPSFFWGEE---------TGMFCIKEVVRQTSTEAYSHH 367 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 R++ +D + E++++ D + Sbjct: 368 IQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEW 402 >gi|220909346|ref|YP_002484657.1| deoxyribodipyrimidine photolyase-like protein [Cyanothece sp. PCC 7425] gi|219865957|gb|ACL46296.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp. PCC 7425] Length = 507 Score = 37.1 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 96/326 (29%), Gaps = 15/326 (4%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK------ 121 + + Q GI ++ + + L VT NR ++ D Sbjct: 83 LHNWIEQHGITELRLMTPTDRPLLKLIHTLKLPCTVTFTPNNRFIWQDQDFIDWARSRKR 142 Query: 122 -LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180 ++E + + LP G N K + D + V Sbjct: 143 LVMEDFYREGRQRFNILMEGNLPVGGRWNFDRDNRKPPKGKLSLPQALWFKPDQITQQVI 202 Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 P+ ++ + PFQ + I + Y + + Sbjct: 203 DGVKQSPLFQASQAYWQIEPFQWGVTRQQALQVLQFFIQTRLSSFGPYQDAMITNEQTM- 261 Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300 + LSPYL++G+L P + ++ ++ + + I + Sbjct: 262 WHALLSPYLNLGLLHPLEVVLAAEQAYLADRDTWELS---SVEGFIRQILGWREYMHGIY 318 Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360 + +G+ + + G T + + Q+ G+ H+ R++ + Sbjct: 319 LYLGEDYPERNWFNHSHPLPSFYW---TGETPMNCLHQVIHQVKQTGYAHHIQRLMVLNN 375 Query: 361 LVKDLLVDWRIGEEYFMSQLLD-GDL 385 V + +++F + +D D Sbjct: 376 FALIAGVSPQELQDWFHAAFIDGYDW 401 >gi|123245797|emb|CAM15163.1| rearranged L-myc fusion sequence [Mus musculus] gi|148698459|gb|EDL30406.1| mCG122876 [Mus musculus] Length = 1918 Score = 37.1 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 43/362 (11%), Positives = 81/362 (22%), Gaps = 36/362 (9%) Query: 43 ATPEQWRQHGISARQSHFIYASLLQVQKSLSQK-----GIVFQYHQCSNFDDSIE----- 92 PE W + + LS S++DD E Sbjct: 465 FDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYDDGKEDKQYR 524 Query: 93 -WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151 L ++R K + + ++ + + + S + I Sbjct: 525 RSLTDQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTCP 584 Query: 152 LQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209 + + K F +++++ RS L P+ + Sbjct: 585 VCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSAQRGIYPKSPTGSLEQNPEQAR 644 Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269 + ++ RD+ GT + LS LK E + Sbjct: 645 G-----ESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSV-----HLKAEHQN 694 Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329 K RE + F + + Sbjct: 695 NDENAKHYLDMKNR----REKCTYCRRH-----FMSAFHLREHEQVHCGPQPYMCVSIDC 745 Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 Y F ++ +L H+ LR + D + D N Sbjct: 746 YARFGSVN----ELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNV 801 Query: 390 GG 391 G Sbjct: 802 LG 803 >gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans T30-4] gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans T30-4] Length = 582 Score = 37.1 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 24/97 (24%) Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---------------ATPEQWRQH---- 51 L W++ +R N AL A ++ + + + ++W+ Sbjct: 39 LYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVTPKLQSFQDDEWKAEAIQD 98 Query: 52 -----GISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83 + R + F L + L+ +G+ Sbjct: 99 ANAHAFATERHALFALEGLTDAYQRLASRGLNLDVFH 135 >gi|310831138|ref|YP_003969781.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1] gi|309386322|gb|ADO67182.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1] Length = 480 Score = 37.1 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 29/293 (9%), Positives = 79/293 (26%), Gaps = 8/293 (2%) Query: 94 LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153 + + + F + + + K + + +++ L Sbjct: 99 FKNIYIHPTINFTFNHLETTDIKKACFKNGKYYHDDFYKFQRKRLDIMMINNKPLKDKYS 158 Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213 + I+ ++ + + + F + Sbjct: 159 FDNMNRKTFPKNIKIPELPKIKQNKYIKEAIKYTLEHFSKNYGSLENFIYPISLTSSRNW 218 Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273 + + + Y + P + +SP +++G+L+ + E + Sbjct: 219 FKIFLQERLKNYGPYQDAVDINKPFG-FHAVISPMMNVGMLTDTEVIKISYEYYQTNKNN 277 Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333 +F + Y + + + N + L W +G TG Sbjct: 278 IPINSFEGFIRQVIG------WRNYVYLIYLEEGDKIKQMNFLNHTNKLSNKWWEGNTGI 331 Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 +D ++++ + H+ R++ + VD FM +D D Sbjct: 332 LPLDDIIKKIVNYAYAHHIERLMYLGNFLLISQVDPNEVYRIFMEWTIDSYDW 384 >gi|18309607|ref|NP_561541.1| hypothetical protein CPE0625 [Clostridium perfringens str. 13] gi|18144284|dbj|BAB80331.1| hypothetical protein [Clostridium perfringens str. 13] Length = 550 Score = 37.1 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 51/249 (20%), Gaps = 7/249 (2%) Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193 + +S + Y+ + + TG +N Sbjct: 67 WYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINND 126 Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253 +F+ + IG + R + + + G Sbjct: 127 WYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW------RSLGSDWYLLNSDGEMQTGW 180 Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313 W L+++ + + + T Sbjct: 181 QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW 240 Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373 + N D + + T + ID + N G M S + Sbjct: 241 RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMS-IGWRTIESEWYYFNNSGAKESN 299 Query: 374 EYFMSQLLD 382 + LD Sbjct: 300 KVIDDWYLD 308 >gi|269965488|ref|ZP_06179606.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829851|gb|EEZ84082.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 514 Score = 36.7 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 34/318 (10%), Positives = 82/318 (25%), Gaps = 26/318 (8%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + +C + + + + Q K + +R + L Sbjct: 110 LLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L + ++++ + L G Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVSDIIERLAKHDIKTIGNLEGD 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + Q D S++S Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305 L+ +L PR+ + + F S ++ + L WRE+ R A P Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + + A + A+ Q + H+ R++ Sbjct: 335 ELGAERKLPNFFWSGETKMA---------CMRNAIEQSLDYAYAHHIQRLMVIGNFCLLT 385 Query: 366 LVDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 386 EIDPDQVDEWYLGIYVDA 403 >gi|153831587|ref|ZP_01984254.1| photolyase [Vibrio harveyi HY01] gi|148872097|gb|EDL70914.1| photolyase [Vibrio harveyi HY01] Length = 514 Score = 36.7 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 35/318 (11%), Positives = 85/318 (26%), Gaps = 26/318 (8%) Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127 + + L++ + +C++ + + + Q K + +R + L Sbjct: 110 LLEQLAKLKLDGVVTRCADSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI----L 165 Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187 + + L ++ +V+ + L G Sbjct: 166 MQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIVERLAKHDIKTIGNLEGD 225 Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247 + + Q D S++S Sbjct: 226 LLWPINRAQSLSLLAHF-----------CQVCLPLFGRFQDAMTGQHDAKWSLYHSRISF 274 Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGK 305 L+ +L PR+ + + F S ++ + L WRE+ R A P Sbjct: 275 SLNSKLLHPREVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKN 334 Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365 + ++ + A + A+ Q + H+ R++ Sbjct: 335 ELGAERKLPDFFWNGETKMA---------CMRNAIGQSLDYAYAHHIQRLMVTGNFCLLT 385 Query: 366 LVDWRIGEEYFMSQLLDG 383 +D +E+++ +D Sbjct: 386 EIDPDQVDEWYLGIYVDA 403 >gi|224012525|ref|XP_002294915.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969354|gb|EED87695.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 821 Score = 36.7 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 17/181 (9%), Positives = 45/181 (24%), Gaps = 2/181 (1%) Query: 30 CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV--FQYHQCSNF 87 + + ++ ++ + + I +R + + V K L +G Sbjct: 500 SNRGNNYIVLFYVVDANFIKSYPIKSRHRTELLKAYDDVYKYLRIRGYRPKLHRLDNETS 559 Query: 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI 147 D +++ + + T +R + R K++ S Sbjct: 560 KDVEDFIVEQNAKHQYTPPDIHRTNIAERMIRTWKNHMCAVRAGTPKTYRLSNWCKDLEQ 619 Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207 ++ L M + T ++ P + P Sbjct: 620 VDMTLNMMRPCTQNPNLSAYEAMEGMFSFDATPMAPIGTECMIHVKPSKRHTWGYHSMKA 679 Query: 208 F 208 + Sbjct: 680 W 680 >gi|254283103|ref|ZP_04958071.1| photolyase [gamma proteobacterium NOR51-B] gi|219679306|gb|EED35655.1| photolyase [gamma proteobacterium NOR51-B] Length = 527 Score = 36.7 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 76/268 (28%), Gaps = 9/268 (3%) Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178 ++ +L G Y +++ Sbjct: 162 WADGRKQLRMEYFYRDMRRQYDILMDGDKPCGDRWNYDNENRVGWRQQEDIPPRVNVEPD 221 Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238 + V+ + D + E+ Y + Sbjct: 222 AVTAAVIEEVSAAFPDNPGDLSQFRLAVTQTGAERQFDWFCEHALSRFGTYQDALVEESP 281 Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298 S +S YL+ G+L P + R+++ + + + + L WRE+ R + + Sbjct: 282 WVFHSLISMYLNCGLLDPLEVCRRVEQHWRNGDCELSAAEGFIRQVLGWREYIRGIYWRF 341 Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358 + F + W G T + A+RQ +G+ H+ R++ Sbjct: 342 MPDYADENFFGAERPLPDWF-------W-SGETEMRCVSQAVRQSLDLGYAHHIQRLMVI 393 Query: 359 SFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 +D + +++++ +D + Sbjct: 394 GNFSLLTGLDVQSVCDWYLAVYIDAYEW 421 >gi|262373183|ref|ZP_06066462.1| photolyase [Acinetobacter junii SH205] gi|262313208|gb|EEY94293.1| photolyase [Acinetobacter junii SH205] Length = 509 Score = 36.7 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 100/363 (27%), Gaps = 42/363 (11%) Query: 55 ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD------------------- 95 ++ FI++++ KSL +G +Y + ++D Sbjct: 44 PQKIAFIFSAMRHFAKSLKAQGWKIRYQTFDRTQAAQGFIDFIQAQLKKNPAEALIITES 103 Query: 96 -SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154 + LQQ + + N+ ++ D Q S ++ + Sbjct: 104 GEFRLQQAIATTWSNQLQIPVQILNDDRFFCSPQAFRNWASNTKTLRMEFFYRKLRQQTG 163 Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214 Y + N + ++ + + + IG+ N Sbjct: 164 YLMNGNEPIGGKWNYDIENRQAWNKNDPIPSALQFDRDQIDLDVIELVKTEFKEHIGQIN 223 Query: 215 ALHILRKFCK--------------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260 + + Y S LSPYL+ G+LSP++ Sbjct: 224 HFNWATTRQQALEALQYFIDYQLIHFGQYQDAMVSGKDYLFHSLLSPYLNCGLLSPKEVC 283 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320 + ++ + D + + L WREF R + + E Sbjct: 284 DAAQQAYFDHHVPLNAAEGFIRQILGWREFIRGIYW-----LKMPTYPDLNELEADRNLP 338 Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380 T + A+R + H+ R++ + + ++++S Sbjct: 339 DYFW---TAETKMLCLREALRNSLENAYAHHIQRLMVIGNFTLLNGISPKQVNDWYLSVY 395 Query: 381 LDG 383 D Sbjct: 396 ADA 398 >gi|221057343|ref|XP_002259809.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809881|emb|CAQ40585.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 1379 Score = 36.7 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 20/278 (7%), Positives = 56/278 (20%), Gaps = 24/278 (8%) Query: 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 D EWLD + + + + + +++ I + + Sbjct: 1106 DYKEWLDQ--KENPIVRTIQKLWDKFINSNFMIWRRYKGRNKDIEMPTNPDWENWMKELK 1163 Query: 149 NHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200 N R + + + + L Sbjct: 1164 NEWSLYNAYIHNERIKWFREKEIELGKFIEDFQFKWMHYNTELLEKHSFDVYKKSQKWDD 1223 Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260 + I + G + + + R+ + + + Sbjct: 1224 SKWIKWIERDG-------ESIMIMDIEKWLNQSREEYNLWQLEDWEQWKNNK------IL 1270 Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 + L E + + R E + + W + + Sbjct: 1271 DWLLSEKKCDQYQYWLKWEYSNKQPSLRNEKLDWYTWKKIRKSEAEDWQKWVHEKDQILI 1330 Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357 + W+ +M W+ + + Sbjct: 1331 QVKNEIWESWKEKKKNALFSMLNHFINNWIIKKQWKVW 1368 >gi|291392713|ref|XP_002712879.1| PREDICTED: von Willebrand factor [Oryctolagus cuniculus] Length = 2829 Score = 36.7 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 24/247 (9%), Positives = 50/247 (20%), Gaps = 5/247 (2%) Query: 96 SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155 R + + + + L K+ P G L+ + Sbjct: 2475 RVAQCARKPCEDSCQTGFTYVLHEGECCGRCLPSACEVKAGWRRGDSPWGDSLSSWKSVG 2534 Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215 + + N + V ++ P P Sbjct: 2535 SRWASPEDPCLINECVRVKEEVFVQQQNVSCPQLNIPTCPVGFQLSCKTAECCPSCRCEP 2594 Query: 216 LHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + D + T QL P + +C E + Sbjct: 2595 VQACMLNGTIIEPGKSVMIDVCTTCRCTVQLGPVNGFKL----ECRKTTCEACPLGYKEE 2650 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 K+ L + ++ + + + W++ TG P Sbjct: 2651 KNQGECCGRCLPMGCTIQLRGGQIMTLKRDETLQDGCDSHFCKVNERGEYIWEKRVTGCP 2710 Query: 335 IIDAAMR 341 D Sbjct: 2711 PFDEHKC 2717 >gi|120404245|ref|YP_954074.1| deoxyribodipyrimidine photolyase--like protein [Mycobacterium vanbaalenii PYR-1] gi|119957063|gb|ABM14068.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 36.7 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 86/351 (24%), Gaps = 29/351 (8%) Query: 57 QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116 ++ L ++ + G + + D+++ L T Sbjct: 44 HRQKLHLVLSALRHAERDLGERAMLIKADTYTDALQQFKRPVLVHEPTSHAAETFVHRLH 103 Query: 117 VR-----RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171 + L + + H + + V + + Sbjct: 104 KQGLVADVLPTPTFALSRKDFQQWACQRTRFRMEDFYRHQRRRFDVLMDGDEPVGNRWNY 163 Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-------------------E 212 + P P + T V PR D Q + + + Sbjct: 164 DEDNREPPPKKQRTLGVPAPYQPREDDIDEQVRRDLDAMDLDTVGVDGPRLFAVTPAEAK 223 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + Y S LS L++GVL P + + + D Sbjct: 224 RALARFIEHRLPSFGRYEDAVMAEDWAMAHSLLSVPLNLGVLHPLDAVDEAERAYCDQQA 283 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + L WRE+ HL + K + A Sbjct: 284 PLAAVEGFIRQILGWREYMWHLYWHFGPEYAAKNELAAHTPPPTWWTDLDADA-----VT 338 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + A++ + GW H+ R++ E+F + +DG Sbjct: 339 AQCLHHALKGVRDRGWTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDG 389 >gi|326912661|ref|XP_003202667.1| PREDICTED: ephrin type-A receptor 1-like [Meleagris gallopavo] Length = 969 Score = 36.7 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 37/325 (11%), Positives = 87/325 (26%), Gaps = 11/325 (3%) Query: 86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145 +DD + + + V+ + E RL K + Sbjct: 596 PYDDPSRGVLEFTKELDVSCVTMENVIGEGEFGEVYRGSLRLP----GKERIVVAIKTLK 651 Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205 S + + + + L + + + + + Sbjct: 652 STYSDSQWWNFLREATIMGQFNHPNIVHLEGVVTKRRPMMIITEYMENGALDTFLRENEE 711 Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265 P+ N L + + RD+ A S + + E Sbjct: 712 KFSPVQLVNMLQGIASGMTYLSEHNYVHRDLAARNILVTRSLQCKVSDFGLSRILENDAE 771 Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 + ++ + R F + + M + + + ++++ Sbjct: 772 GTYETKGGKIPIRWTAPEAIAHRIFTSASDVWSFGIVMWEVLSFGDKPYGNMTNQEVMRS 831 Query: 326 WKQGYTGFPIIDA--AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383 + GY P +D + +L W H+R+R + L + + + D Sbjct: 832 LEDGYRLPPPVDCPSILYELMKSCWSHDRMRRPHFQEIRAQLQHFS--SSPHLLRSVADF 889 Query: 384 DLASNNGGWQWAASTGNDSVPYFRI 408 D + + +G+D +PY I Sbjct: 890 DPRVTL---RLPSCSGSDGIPYRSI 911 >gi|54293212|ref|YP_125627.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens] gi|53753044|emb|CAH14491.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens] Length = 512 Score = 36.7 bits (83), Expect = 9.5, Method: Composition-based stats. Identities = 49/395 (12%), Positives = 106/395 (26%), Gaps = 47/395 (11%) Query: 27 YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY----- 81 AA + V +A + H ++ F+++++ + L +KG +Y Sbjct: 19 LAAINKQKDIVFLCEVAEETSYVSHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDD 76 Query: 82 ------------------------HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117 ++ Q + + + ++ Sbjct: 77 PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKI 136 Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQA 172 + K + + + Y I + + Sbjct: 137 NEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPKR 196 Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232 + V + G V+ F + + A + + F Y Sbjct: 197 LEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEADYFMEHFLCNFGAYQDA 256 Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292 S+LS YL+ G+L P + ++ + + S L WRE+ R Sbjct: 257 MLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVR 316 Query: 293 HLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351 + F P F + TG I +RQ +T + H+ Sbjct: 317 GIYWLFMPDYGEMNYFNACRPLPSFFWGEE---------TGMFCIKEVVRQTSTEAYSHH 367 Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLD-GDL 385 R++ +D + E++++ D + Sbjct: 368 IQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEW 402 >gi|194214076|ref|XP_001915620.1| PREDICTED: similar to KIAA0542 protein [Equus caballus] Length = 1193 Score = 36.3 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 26/301 (8%), Positives = 74/301 (24%), Gaps = 18/301 (5%) Query: 93 WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152 + + + R ++ LQ + V + A Sbjct: 60 CIRCVARKFLYLWIRKTFGRVFPSKARLYYEQRILQKVFEEWKEEWWVFHREWKLCVRAD 119 Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212 Y+ Y + + ++ + + + + + Sbjct: 120 CHYRYYLYNLMFQTWKTYVHQQQEMRNKYMKAEDHDAKQKMRQAWKSWLIYVVFRRTKLQ 179 Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272 + + + E R +G + + + + L + Sbjct: 180 MQTTALEFRQRSVLWVRWREWR--------------QRLGQVRLGRALHATAVKHRALRL 225 Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332 + ++ + L R R +++ + + +E + + + WK+ Sbjct: 226 QLQAWSQWQQQLLCVRRERRKVVSAVKHHQHWQKWRSLKAWLENLQGRRMKRQWKEMAQQ 285 Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFL----VKDLLVDWRIGEEYFMSQLLDGDLASN 388 F + W R + + + +V WR + LL + A+ Sbjct: 286 FHRVTVLHTHFCDWQWAWERRKSLYTHHTRVMGLARRMVLWRAFTHWKHYVLLCAEEAAQ 345 Query: 389 N 389 Sbjct: 346 W 346 >gi|260797857|ref|XP_002593917.1| hypothetical protein BRAFLDRAFT_234854 [Branchiostoma floridae] gi|229279149|gb|EEN49928.1| hypothetical protein BRAFLDRAFT_234854 [Branchiostoma floridae] Length = 1553 Score = 36.3 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 23/259 (8%), Positives = 49/259 (18%), Gaps = 17/259 (6%) Query: 98 CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157 ++ K + RR H + + + P ++L Sbjct: 1159 VTEKDFEKAPAGGCMRPCDFRRCGHACASACHPIDPEHEEYKCKKPCKNVLCDLGHKCPK 1218 Query: 158 YTPFRKALIQNLVQ---ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214 + V+ D + A + IP P Sbjct: 1219 PCHETCDDCKIRVEKTIPDCQHKQKVACYVPPSEFVCQIPCEKTLPCNHKCKNKCGERCT 1278 Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274 + + ++ +P C LK Sbjct: 1279 QYCKEVVPHQLPCLHTIQAACSAKEDSLVCNTP-----------CPQVLKCGHPCSGTCH 1327 Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 + + + P N+ H Q G P Sbjct: 1328 LCKQGRLHQPCVRPCNRELICSHQCREPCSHQNCPPCRSPCRNRCVHSH---CQDECGKP 1384 Query: 335 IIDAAMRQLNTIGWMHNRL 353 + ++ H++ Sbjct: 1385 CVVMPCQEPCEWRCKHHKC 1403 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.121 0.374 Lambda K H 0.267 0.0367 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,859,715,987 Number of Sequences: 14124377 Number of extensions: 228789962 Number of successful extensions: 699562 Number of sequences better than 10.0: 3622 Number of HSP's better than 10.0 without gapping: 2793 Number of HSP's successfully gapped in prelim test: 829 Number of HSP's that attempted gapping in prelim test: 685973 Number of HSP's gapped (non-prelim): 4617 length of query: 483 length of database: 4,842,793,630 effective HSP length: 143 effective length of query: 340 effective length of database: 2,823,007,719 effective search space: 959822624460 effective search space used: 959822624460 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 83 (36.7 bits)